Query 002912
Match_columns 867
No_of_seqs 202 out of 265
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 13:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 2.8E-95 6E-100 804.9 30.4 442 150-608 5-457 (458)
2 PF04802 SMK-1: Component of I 100.0 7.8E-64 1.7E-68 509.7 17.6 190 164-353 3-193 (193)
3 cd00835 RanBD Ran-binding doma 98.3 2.3E-06 5E-11 82.1 9.3 97 12-108 16-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 97.9 4.3E-05 9.3E-10 73.0 8.9 98 12-109 15-121 (122)
5 PF00568 WH1: WH1 domain; Int 97.3 0.0012 2.6E-08 62.6 9.6 96 10-107 12-110 (111)
6 cd00837 EVH1 EVH1 (Enabled, Va 97.3 0.0014 3E-08 61.6 9.8 94 11-106 6-102 (104)
7 smart00160 RanBD Ran-binding d 97.2 0.0016 3.4E-08 63.6 9.0 94 12-105 25-128 (130)
8 PF10508 Proteasom_PSMB: Prote 96.1 0.69 1.5E-05 54.8 21.8 201 355-589 75-278 (503)
9 KOG2175 Protein predicted to b 95.5 0.09 1.9E-06 60.9 11.0 264 328-611 7-304 (458)
10 KOG2160 Armadillo/beta-catenin 95.2 2.4 5.3E-05 48.0 20.6 193 312-542 88-281 (342)
11 smart00461 WH1 WASP homology r 95.0 0.14 3.1E-06 48.3 9.1 92 12-106 11-104 (106)
12 PF01602 Adaptin_N: Adaptin N 93.4 1.1 2.4E-05 52.2 13.8 231 358-624 115-372 (526)
13 PF12460 MMS19_C: RNAPII trans 92.4 26 0.00056 40.6 23.2 240 277-553 109-404 (415)
14 PF03224 V-ATPase_H_N: V-ATPas 92.2 8.7 0.00019 42.6 18.2 253 274-561 23-287 (312)
15 PF01602 Adaptin_N: Adaptin N 91.8 8.2 0.00018 45.0 18.2 228 307-588 116-349 (526)
16 PF10508 Proteasom_PSMB: Prote 91.4 33 0.00071 40.9 22.8 170 347-546 192-369 (503)
17 PTZ00429 beta-adaptin; Provisi 91.2 51 0.0011 41.5 25.5 159 343-542 119-284 (746)
18 KOG0166 Karyopherin (importin) 90.9 21 0.00046 42.7 20.2 242 306-589 195-436 (514)
19 PF04499 SAPS: SIT4 phosphatas 90.5 45 0.00096 39.8 23.9 282 287-601 3-394 (475)
20 cd00020 ARM Armadillo/beta-cat 89.5 8.3 0.00018 34.8 12.5 111 306-431 8-118 (120)
21 cd01207 Ena-Vasp Enabled-VASP- 88.3 3.5 7.6E-05 39.7 9.4 90 15-107 10-106 (111)
22 PF14664 RICTOR_N: Rapamycin-i 85.4 11 0.00024 43.3 13.1 145 295-464 47-200 (371)
23 PF06058 DCP1: Dcp1-like decap 82.5 6.3 0.00014 38.5 8.2 92 11-107 26-121 (122)
24 COG5240 SEC21 Vesicle coat com 80.4 25 0.00054 42.6 13.3 144 275-432 230-403 (898)
25 PF05804 KAP: Kinesin-associat 79.1 1.8E+02 0.004 36.5 23.4 113 352-464 285-423 (708)
26 cd01205 WASP WASP-type EVH1 do 78.6 19 0.00041 34.6 9.7 93 11-105 9-102 (105)
27 PF12348 CLASP_N: CLASP N term 78.0 74 0.0016 33.0 15.0 186 315-541 15-204 (228)
28 cd00020 ARM Armadillo/beta-cat 76.4 10 0.00023 34.2 7.3 74 510-586 3-76 (120)
29 KOG2085 Serine/threonine prote 72.2 25 0.00053 41.0 10.2 233 135-394 145-422 (457)
30 KOG2734 Uncharacterized conser 72.1 2.2E+02 0.0048 34.0 19.6 200 347-569 166-373 (536)
31 PLN03200 cellulose synthase-in 68.7 4.5E+02 0.0098 37.2 22.0 224 304-568 57-285 (2102)
32 PF11707 Npa1: Ribosome 60S bi 68.5 2.1E+02 0.0045 32.3 16.9 219 295-542 48-302 (330)
33 cd01206 Homer Homer type EVH1 67.8 35 0.00075 33.1 8.6 97 10-106 7-105 (111)
34 PLN03200 cellulose synthase-in 67.7 5.3E+02 0.011 36.6 28.0 214 355-600 607-841 (2102)
35 KOG1062 Vesicle coat complex A 63.6 3.9E+02 0.0085 34.0 18.3 91 356-464 141-231 (866)
36 PF11841 DUF3361: Domain of un 62.2 2E+02 0.0043 29.8 13.6 103 348-457 39-153 (160)
37 KOG0166 Karyopherin (importin) 60.4 3.8E+02 0.0083 32.5 19.7 200 350-581 145-344 (514)
38 cd00256 VATPase_H VATPase_H, r 60.4 3.5E+02 0.0076 32.1 26.1 205 321-566 68-285 (429)
39 PF04499 SAPS: SIT4 phosphatas 60.0 32 0.00069 41.0 8.4 276 291-569 49-409 (475)
40 PF08569 Mo25: Mo25-like; Int 59.0 3.3E+02 0.0071 31.2 16.1 170 347-542 66-282 (335)
41 KOG1991 Nuclear transport rece 58.7 4.7E+02 0.01 34.1 18.1 61 366-435 471-534 (1010)
42 KOG0168 Putative ubiquitin fus 56.2 1.2E+02 0.0026 38.6 12.4 247 294-567 360-653 (1051)
43 PF01603 B56: Protein phosphat 52.0 1.2E+02 0.0025 35.5 11.2 192 164-394 131-378 (409)
44 KOG2073 SAP family cell cycle 50.1 6.8E+02 0.015 32.3 19.3 130 284-433 79-220 (838)
45 PF13251 DUF4042: Domain of un 49.7 1.9E+02 0.004 30.4 11.1 159 372-545 1-176 (182)
46 PF02985 HEAT: HEAT repeat; I 48.1 22 0.00047 26.0 3.0 30 358-387 1-30 (31)
47 PF04826 Arm_2: Armadillo-like 47.9 4.1E+02 0.009 29.1 16.8 70 515-588 135-204 (254)
48 PF12922 Cnd1_N: non-SMC mitot 47.8 52 0.0011 33.5 6.7 64 423-505 100-167 (171)
49 PF12755 Vac14_Fab1_bd: Vacuol 46.7 74 0.0016 29.8 7.0 67 358-431 28-94 (97)
50 PF12460 MMS19_C: RNAPII trans 46.0 3.4E+02 0.0074 31.5 13.8 63 329-396 342-404 (415)
51 PF10257 RAI16-like: Retinoic 45.5 50 0.0011 37.7 6.8 91 508-601 3-99 (353)
52 PF11707 Npa1: Ribosome 60S bi 44.6 5.1E+02 0.011 29.2 15.7 169 347-541 47-235 (330)
53 PF00790 VHS: VHS domain; Int 44.4 3.1E+02 0.0067 27.0 11.3 109 307-432 6-117 (140)
54 KOG1293 Proteins containing ar 43.7 1.1E+02 0.0024 37.7 9.4 115 484-610 436-553 (678)
55 PF05536 Neurochondrin: Neuroc 43.6 6.9E+02 0.015 30.5 18.1 205 305-546 5-216 (543)
56 smart00638 LPD_N Lipoprotein N 43.0 1.6E+02 0.0034 35.5 10.8 75 324-398 440-521 (574)
57 PF11894 DUF3414: Protein of u 42.8 1E+03 0.022 33.1 19.4 54 378-432 585-638 (1691)
58 cd03568 VHS_STAM VHS domain fa 42.7 2.4E+02 0.0052 28.3 10.4 107 309-432 3-109 (144)
59 PF13001 Ecm29: Proteasome sta 40.7 75 0.0016 38.0 7.6 129 293-432 300-442 (501)
60 KOG1062 Vesicle coat complex A 38.7 9.7E+02 0.021 30.8 17.2 68 360-437 316-383 (866)
61 PF04821 TIMELESS: Timeless pr 38.7 5.7E+02 0.012 28.1 14.7 71 417-504 133-212 (266)
62 PF14500 MMS19_N: Dos2-interac 37.5 4.5E+02 0.0098 28.9 12.4 164 362-566 4-168 (262)
63 KOG1061 Vesicle coat complex A 35.7 1.8E+02 0.004 36.4 9.7 248 359-628 123-422 (734)
64 cd03569 VHS_Hrs_Vps27p VHS dom 34.5 4.8E+02 0.01 26.0 11.1 109 307-432 5-113 (142)
65 KOG2171 Karyopherin (importin) 34.4 1.3E+03 0.027 30.8 20.1 271 280-609 178-486 (1075)
66 PF13646 HEAT_2: HEAT repeats; 32.3 1.6E+02 0.0035 25.4 6.6 55 359-428 33-87 (88)
67 KOG1248 Uncharacterized conser 32.2 1.4E+03 0.03 30.7 26.3 33 515-547 828-860 (1176)
68 KOG4035 Coeffector of mDia Rho 30.7 7E+02 0.015 29.3 12.5 219 224-462 125-382 (411)
69 PF12719 Cnd3: Nuclear condens 30.4 7.7E+02 0.017 27.2 13.8 102 320-435 40-145 (298)
70 PF04821 TIMELESS: Timeless pr 30.3 2.4E+02 0.0052 31.0 8.9 88 501-590 96-209 (266)
71 smart00185 ARM Armadillo/beta- 30.2 82 0.0018 23.3 3.8 36 507-542 5-40 (41)
72 PF08167 RIX1: rRNA processing 29.9 5.1E+02 0.011 26.2 10.6 124 360-509 28-152 (165)
73 KOG2160 Armadillo/beta-catenin 29.3 2.2E+02 0.0048 32.8 8.4 97 283-390 146-244 (342)
74 PF08767 CRM1_C: CRM1 C termin 29.1 7.2E+02 0.016 28.0 12.5 61 319-386 132-194 (319)
75 cd03561 VHS VHS domain family; 28.8 4.3E+02 0.0094 25.7 9.5 88 331-431 21-110 (133)
76 COG5111 RPC34 DNA-directed RNA 28.8 24 0.00052 38.2 0.8 59 547-611 170-250 (301)
77 PF13251 DUF4042: Domain of un 28.4 2.6E+02 0.0056 29.3 8.2 74 360-437 43-135 (182)
78 PF12783 Sec7_N: Guanine nucle 28.2 5.3E+02 0.011 25.8 10.3 79 349-432 65-145 (168)
79 KOG2724 Nuclear pore complex c 28.1 78 0.0017 37.1 4.7 93 13-107 387-485 (487)
80 PF08926 DUF1908: Domain of un 27.8 1.5E+02 0.0031 33.2 6.4 50 167-227 192-241 (282)
81 COG5171 YRB1 Ran GTPase-activa 27.5 33 0.00071 35.7 1.5 40 13-52 96-136 (211)
82 KOG3671 Actin regulatory prote 26.4 58 0.0013 38.8 3.4 90 13-104 44-135 (569)
83 PF15005 IZUMO: Izumo sperm-eg 26.1 2.1E+02 0.0044 29.6 6.8 93 218-315 3-100 (160)
84 smart00288 VHS Domain present 25.1 5E+02 0.011 25.4 9.2 76 281-357 57-133 (133)
85 PF06334 Orthopox_A47: Orthopo 25.0 50 0.0011 34.4 2.2 85 141-225 68-180 (244)
86 PF12333 Ipi1_N: Rix1 complex 24.8 3.2E+02 0.0069 25.7 7.4 40 359-398 13-53 (102)
87 PF01347 Vitellogenin_N: Lipop 24.8 1.6E+02 0.0034 35.7 6.8 75 324-398 484-565 (618)
88 COG5369 Uncharacterized conser 24.4 1.4E+03 0.031 28.3 15.7 135 283-432 355-501 (743)
89 KOG0168 Putative ubiquitin fus 24.3 1E+03 0.022 30.9 13.2 74 355-432 209-283 (1051)
90 KOG2956 CLIP-associating prote 24.1 5.3E+02 0.011 31.1 10.4 87 295-390 310-405 (516)
91 PF05804 KAP: Kinesin-associat 23.9 2.4E+02 0.0053 35.5 8.2 75 507-588 324-398 (708)
92 COG3479 Phenolic acid decarbox 23.8 42 0.00091 33.6 1.4 20 76-96 66-85 (175)
93 KOG4224 Armadillo repeat prote 23.2 1.3E+03 0.028 27.4 16.2 182 351-567 202-386 (550)
94 PF04078 Rcd1: Cell differenti 23.2 3.9E+02 0.0086 29.7 8.7 79 488-567 64-149 (262)
95 PF03224 V-ATPase_H_N: V-ATPas 23.1 4.9E+02 0.011 28.9 9.8 104 484-589 70-180 (312)
96 PF14278 TetR_C_8: Transcripti 23.1 2E+02 0.0044 24.1 5.4 67 295-366 6-76 (77)
97 PF00790 VHS: VHS domain; Int 23.0 5.7E+02 0.012 25.1 9.2 76 281-357 62-140 (140)
98 PF00514 Arm: Armadillo/beta-c 22.7 1.7E+02 0.0037 22.3 4.4 36 507-542 5-40 (41)
99 PF11698 V-ATPase_H_C: V-ATPas 22.5 2.8E+02 0.0061 27.3 6.7 59 484-543 57-115 (119)
100 cd03567 VHS_GGA VHS domain fam 22.2 8E+02 0.017 24.5 10.9 109 307-432 2-115 (139)
101 PF06371 Drf_GBD: Diaphanous G 22.1 2.8E+02 0.0062 27.7 7.1 77 488-587 109-185 (187)
102 PF05505 Ebola_NP: Ebola nucle 21.6 1E+03 0.022 29.1 12.0 21 695-715 461-481 (717)
103 cd03572 ENTH_epsin_related ENT 21.2 1.5E+02 0.0032 29.2 4.6 52 514-568 38-89 (122)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-95 Score=804.92 Aligned_cols=442 Identities=44% Similarity=0.740 Sum_probs=420.6
Q ss_pred ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 002912 150 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 229 (867)
Q Consensus 150 s~~~rerla~~Il~~~~Yi~kLl~LF~~cEdlen~~~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VvG~LEYDPe~p 229 (867)
++..|++++.+ +++++||+||+++|+.|||++++++||++|+|+|+|+++|...|+|.||+|++||+|+|||||||++|
T Consensus 5 ~~~~r~~~~~~-ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLA-LENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHH-HhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 35567776654 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcc--cccchhhHHhHHHHHHHhHHHHHHHhhCCHHHH
Q 002912 230 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 307 (867)
Q Consensus 230 ~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLp--RiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL 307 (867)
++++||+||...++|||||||.||.++.|||||||+||||||||| +++||++++++||+||||+++||++||+|..|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 988899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002912 308 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 387 (867)
Q Consensus 308 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh 387 (867)
.+||+++++++++.++|++++.|+||||+++|+||++.|.+||++|++.|||+++++++.++|.++|.++|||+..++++
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCc-----chHHHHHHHHhccCChhh--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 002912 388 DPNLLRSYVVRQEGI-----PLLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 458 (867)
Q Consensus 388 dP~lvR~~i~~qe~~-----~Ll~~Li~~ll~d~d~gl--k~Ql~eaLk~LLDp~~m~~~--e~d~FL~~FY~~~~~~L~ 458 (867)
+|.++|++.+.++.. .++++++++|+++.++.+ .+|++.++++||||++|.++ ++.+|+++||++|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 999999999987644 489999999999988755 59999999999999999885 899999999999999998
Q ss_pred HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHH
Q 002912 459 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 538 (867)
Q Consensus 459 ~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~ 538 (867)
+|...+... .++++.+..+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 888764211 156788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHhhHhhcc
Q 002912 539 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 608 (867)
Q Consensus 539 R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~eNik~Li~hlve~y~~~l~ 608 (867)
|.++.++|+||+||++++ |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.++
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=7.8e-64 Score=509.71 Aligned_cols=190 Identities=53% Similarity=0.956 Sum_probs=186.8
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCCCc-cchhHhhhhcC
Q 002912 164 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHV-QHHRNFLKEHV 242 (867)
Q Consensus 164 ~~~Yi~kLl~LF~~cEdlen~~~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VvG~LEYDPe~p~~-~nHR~fL~~~a 242 (867)
+++||+||+++|++||+++++++||+||+|||+||+||+++|+|+|++|++||+|||||||||++|++ ++||+||++++
T Consensus 3 ~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~~ 82 (193)
T PF04802_consen 3 NENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEKA 82 (193)
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred CceeeeecCChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHH
Q 002912 243 VFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE 322 (867)
Q Consensus 243 ~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e 322 (867)
+|||||||+|+++++|||||||+||||||||||+|||+++|+|||+|||||++||++||+|++||++||+++++++++.+
T Consensus 83 ~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~ 162 (193)
T PF04802_consen 83 KFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDE 162 (193)
T ss_pred CCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 002912 323 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 353 (867)
Q Consensus 323 ~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~L 353 (867)
+|+++++||||||++||+||+++|..||++|
T Consensus 163 ~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 163 RRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 9999999999999999999999999999986
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=98.33 E-value=2.3e-06 Score=82.10 Aligned_cols=97 Identities=16% Similarity=0.366 Sum_probs=82.7
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEecCCCc-----
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDPEY----- 83 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~~~----- 83 (867)
.+.|+|.+.+ .+.|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|++++ +.-++|+-.+.
T Consensus 16 ~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~ 95 (122)
T cd00835 16 VRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEP 95 (122)
T ss_pred EEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCC
Confidence 4679999975 379999999999987666567899999999888899999999999999999 89999973221
Q ss_pred -cccccccccCccchhHHHHHHHHHh
Q 002912 84 -STELALSFQEPTGCSYIWDNICNVQ 108 (867)
Q Consensus 84 -g~DlALSFQE~~GC~~IWe~I~~VQ 108 (867)
-.-+++.|..++.|+.+++.|..+|
T Consensus 96 ~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 96 KPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 1248999999999999999999887
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=97.92 E-value=4.3e-05 Score=72.96 Aligned_cols=98 Identities=15% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEec-----CCC-
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 82 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~- 82 (867)
.++|+|.+.. +..|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|+..+ +.-++|+ |.+
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSS
T ss_pred EEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCC
Confidence 4689999863 589999999999987766567789999999988899999999999888766 4578893 221
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002912 83 YSTELALSFQEPTGCSYIWDNICNVQR 109 (867)
Q Consensus 83 ~g~DlALSFQE~~GC~~IWe~I~~VQ~ 109 (867)
.-.-+++.|..++=+.++...|.+.|.
T Consensus 95 ~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 95 KPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 124689999999999999999988875
No 5
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.35 E-value=0.0012 Score=62.61 Aligned_cols=96 Identities=17% Similarity=0.329 Sum_probs=79.8
Q ss_pred CCCCeEEEEeC--CCCCcee-ccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccc
Q 002912 10 NANPMQVYRLN--DDGKWDD-QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 86 (867)
Q Consensus 10 ~~~~VKVY~L~--~~~~W~D-~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 86 (867)
.+..++||..+ .++.|.- .|+|-++.......+...|.+.+-.++..+++..|.++-.|+++..+..+|.+.+ .-
T Consensus 12 ~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~--~~ 89 (111)
T PF00568_consen 12 ATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDD--CV 89 (111)
T ss_dssp EEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETT--CE
T ss_pred EEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCC--eE
Confidence 34567899984 3445999 9999998765444466788888888999999999999999999999999999986 48
Q ss_pred ccccccCccchhHHHHHHHHH
Q 002912 87 LALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 87 lALSFQE~~GC~~IWe~I~~V 107 (867)
++|+|++.+-+....+.|++.
T Consensus 90 ~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 90 YGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHhcc
Confidence 999999999999999888764
No 6
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.33 E-value=0.0014 Score=61.55 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=79.5
Q ss_pred CCCeEEEEeCC-CCCceec--cceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccccc
Q 002912 11 ANPMQVYRLND-DGKWDDQ--GTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 87 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~--GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 87 (867)
+.+++||.-++ .+.|.-. |+|-+...........+|.+++..++..+++..|.++-.|.+...+..+|.+.+ .=+
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~--~~~ 83 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN--CVY 83 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC--cEE
Confidence 35688999764 4899999 888887765444556889999999999999999999999999999999999986 458
Q ss_pred cccccCccchhHHHHHHHH
Q 002912 88 ALSFQEPTGCSYIWDNICN 106 (867)
Q Consensus 88 ALSFQE~~GC~~IWe~I~~ 106 (867)
+|+|++.+.+....+.+++
T Consensus 84 GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 84 GLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEeeCCHHHHHHHHHHHHh
Confidence 9999999999988877764
No 7
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=97.21 E-value=0.0016 Score=63.64 Aligned_cols=94 Identities=11% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeCCC-cceeEEEEecCCCcceEEeecCCCcccccccC--eEEEecCCCc----
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSMERS-EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWRDPEY---- 83 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqe--TLIvWte~~~---- 83 (867)
.+.|+|++.+ .+.|.++|+|.+..-..... ....|++|.+.....+|.+.|.++-.|+.... .-.+|+-.+.
T Consensus 25 ~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~ 104 (130)
T smart00160 25 ARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDI 104 (130)
T ss_pred EEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCC
Confidence 4679999974 57999999999887554434 56899999998888999999999999987654 4667853221
Q ss_pred --cccccccccCccchhHHHHHHH
Q 002912 84 --STELALSFQEPTGCSYIWDNIC 105 (867)
Q Consensus 84 --g~DlALSFQE~~GC~~IWe~I~ 105 (867)
-.-+++-|-.++.++.+++.|.
T Consensus 105 ~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 105 PKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred CceEEEEEEeCCHHHHHHHHHHHH
Confidence 1348999999999998887764
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.05 E-value=0.69 Score=54.79 Aligned_cols=201 Identities=11% Similarity=0.145 Sum_probs=142.0
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 002912 355 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 434 (867)
Q Consensus 355 ~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 434 (867)
..++.+.+..+|.|+++.+|..++-.|..++.|....++- +. +..++..++..+ .+.|.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~~---~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-LV---DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-hc---CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC
Confidence 4566788899999999999999999888888888664432 21 334666666544 788999999999999999754
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhch
Q 002912 435 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 514 (867)
Q Consensus 435 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 514 (867)
.. -++..|+.....-+..++..+ .+.+-..++|+++-...++... -.++...+
T Consensus 150 ~~--------~~~~l~~~~~~~~L~~l~~~~------------------~~~vR~Rv~el~v~i~~~S~~~-~~~~~~sg 202 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKLKSLMSQS------------------SDIVRCRVYELLVEIASHSPEA-AEAVVNSG 202 (503)
T ss_pred ch--------hHHHHhCcchHHHHHHHHhcc------------------CHHHHHHHHHHHHHHHhcCHHH-HHHHHhcc
Confidence 31 223333333222222232210 1223346777777776665544 46777788
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHh--CC-CCcchHHHHHHHHHHHHh
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~n--g~-R~NLlnSA~LElfefIr~ 589 (867)
++.+++..+...+-.+++.|+-.+..+...+.. ..||.+.++|.-+.+.+... .+ -..++=...+.||..+-.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 999999999999999999999999998874433 79999999999999998643 23 355666777788888876
No 9
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.09 Score=60.95 Aligned_cols=264 Identities=14% Similarity=0.104 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHh-------c-
Q 002912 328 VHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR-------Q- 399 (867)
Q Consensus 328 V~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~-------q- 399 (867)
..+.++-|.+.+..+-+.=.++|....+....+-+..+...-..-++....+||.++++ |+..++-.-.. +
T Consensus 7 ~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~-d~~im~v~g~lEydp~~~~~ 85 (458)
T KOG2175|consen 7 QRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFD-DECIMDVIGCLEYDPAVPQS 85 (458)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhc-cccccccccccccCccCCCh
Confidence 34455555555555555555666666555444444444433333345556667766666 55554432111 1
Q ss_pred ----CCcchHHHHHHHHhccCChhhHHHHHHHHHHhc--CC---C--CCCch-----------hhhHHHHHHHHhhHHHH
Q 002912 400 ----EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL--DS---Y--TLSGA-----------QRDTIIEIFYEKHLGQL 457 (867)
Q Consensus 400 ----e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL--Dp---~--~m~~~-----------e~d~FL~~FY~~~~~~L 457 (867)
+...+. ...+..+...+|++..++-+..|+.. |. + ....+ .+..+++++++..- +
T Consensus 86 k~HR~~l~~~-~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~--~ 162 (458)
T KOG2175|consen 86 KKHREFLSLL-AKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEK--F 162 (458)
T ss_pred hhhHHHHHhh-ccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCch--H
Confidence 111222 24555666789999999999877643 42 1 11111 34567777887641 1
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhch---HHHHHHH-HhhccchhhHHH
Q 002912 458 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN---VVDKVLL-LTRRREKYLVVA 533 (867)
Q Consensus 458 ~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n---ll~rVl~-Ll~~~~K~L~La 533 (867)
+.+|++....+. ...++-..+.|+|+..|.+.+.|.+..+..+...- .+-.++. .++..++-++.+
T Consensus 163 l~eLf~~l~~~~----------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~ 232 (458)
T KOG2175|consen 163 LIELFARLRSES----------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSA 232 (458)
T ss_pred HHHHHHHhcCCc----------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHH
Confidence 344443211110 01245568899999999999999998876533322 2333332 245568888999
Q ss_pred HHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHhhHhhccccc
Q 002912 534 AVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE 611 (867)
Q Consensus 534 AlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~eNik~Li~hlve~y~~~l~~i~ 611 (867)
|.+.+.+++-.+= -++++...+-..+.- .+..--|+++|+.++.||+-+.+..+.+..+.-..+.+.+....
T Consensus 233 ~~di~~~~ve~~~-----~~i~~~~~~~~~~~~-~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 233 ATDILARLVEMSP-----SMIRSFTLGEALDPD-DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred HHHHHHHHHhcCH-----HHHHHHHHHhhcCch-hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 9998888875432 233332222222221 23345689999999999999998888888888888888887765
No 10
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=2.4 Score=47.99 Aligned_cols=193 Identities=18% Similarity=0.140 Sum_probs=127.8
Q ss_pred HHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH
Q 002912 312 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL 391 (867)
Q Consensus 312 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~l 391 (867)
..+.++..+.++|.++..=|.++|.=-. --.+|+++|.+..+--.+.+.+..+|-.|+.+|.+++..+|-.
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iD---------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDID---------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhh---------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 3455667777888877777777665322 2346788876666655999999999999999999999999985
Q ss_pred HHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 002912 392 LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIA 471 (867)
Q Consensus 392 vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~ 471 (867)
--. ++.-. .+..|+..+-.+.+.+.++++.-|+-.|+=..-.. .+.| |=-+....|...+-.+
T Consensus 159 Qe~-v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g---~~~f---l~~~G~~~L~~vl~~~------- 221 (342)
T KOG2160|consen 159 QEQ-VIELG---ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG---QDEF---LKLNGYQVLRDVLQSN------- 221 (342)
T ss_pred HHH-HHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH---HHHH---HhcCCHHHHHHHHHcC-------
Confidence 443 44322 66777787888888999999999999998443211 1222 2224445555544331
Q ss_pred cccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHH-HHhhccchhhHHHHHHHHHHHh
Q 002912 472 QSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVL-LLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 472 ~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl-~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
.+...+....+.|++..++.|.+.-. +++.-...+++ .+..+-+--..-+|++..=+.+
T Consensus 222 ----------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 222 ----------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred ----------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12334556788999999999987644 55555555554 3455555566666666555544
No 11
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=95.02 E-value=0.14 Score=48.34 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCeEEEEeCCCCCceeccce-EEEEEeeCCCcceeEEEEecCCC-cceEEeecCCCcccccccCeEEEecCCCccccccc
Q 002912 12 NPMQVYRLNDDGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 89 (867)
Q Consensus 12 ~~VKVY~L~~~~~W~D~GTG-~~s~~~~e~~~~~~L~V~sE~d~-~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlAL 89 (867)
.-|.+|.=.. +.|.-.|+| -+............+-|.+...+ ..+++..|.++-.|.+.-.+.-+|.+.+ .=..|
T Consensus 11 avV~~y~~~~-~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~--~~~GL 87 (106)
T smart00461 11 AVVQLYDADT-KKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDK--CVYGL 87 (106)
T ss_pred EEEEEEeCCC-CCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCC--eEEEe
Confidence 3567888654 469999999 55444433344566667677666 7889999999999999999999999854 56899
Q ss_pred cccCccchhHHHHHHHH
Q 002912 90 SFQEPTGCSYIWDNICN 106 (867)
Q Consensus 90 SFQE~~GC~~IWe~I~~ 106 (867)
+|++.+.+....+.+++
T Consensus 88 nF~se~EA~~F~~~v~~ 104 (106)
T smart00461 88 NFASEEEAKKFRKKVLK 104 (106)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 99999999988877765
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.36 E-value=1.1 Score=52.17 Aligned_cols=231 Identities=13% Similarity=0.159 Sum_probs=132.5
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh-cCCCC
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 436 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L-LDp~~ 436 (867)
+++.+...|.++++.||..|+--+..+...+|+.++.. ++..|.+ ++.|.++++.....-++..+ -.+..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 46778888999999999999999999999999988752 3444444 45899999988888887777 21111
Q ss_pred CCchhhhHHHHHHHHhh-------HHHHHHHHHhcCCCcccccccCCCCcccCCc---HHHHHH------------HHHH
Q 002912 437 LSGAQRDTIIEIFYEKH-------LGQLIDVITASCPQEGIAQSASSGGRVESTK---PEILSN------------ICEL 494 (867)
Q Consensus 437 m~~~e~d~FL~~FY~~~-------~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~---~~ll~~------------l~EL 494 (867)
. . .++..+|... .+|+...++..... .. ...... ..++.. +.|.
T Consensus 186 ~----~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~-~~--------~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 Y----K-SLIPKLIRILCQLLSDPDPWLQIKILRLLRR-YA--------PMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp H----T-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT-ST--------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----h-hhHHHHHHHhhhcccccchHHHHHHHHHHHh-cc--------cCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 0 0 3455555442 23332222221000 00 000001 112222 2222
Q ss_pred HHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCc
Q 002912 495 LCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 574 (867)
Q Consensus 495 L~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~N 574 (867)
...+..-.+. .-+...++..+.+++.+++.-++..|++.+..++... ...++.+-+..|.-..+.+.
T Consensus 252 ~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---------~~~v~~~~~~~~~l~~~~d~ 318 (526)
T PF01602_consen 252 IRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---------PPAVFNQSLILFFLLYDDDP 318 (526)
T ss_dssp HHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---------HHHHGTHHHHHHHHHCSSSH
T ss_pred HHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---------chhhhhhhhhhheecCCCCh
Confidence 2222211111 1144556677778888888888889999988887665 12223443444433345556
Q ss_pred chHHHHHHHHHHH-HhhChHHHHHHHHHhhHhh---cccccchhhHHHHHHhhh
Q 002912 575 LLNSAVLELFEYI-RKENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKYE 624 (867)
Q Consensus 575 LlnSA~LElfefI-r~eNik~Li~hlve~y~~~---l~~i~yv~tF~~L~~rye 624 (867)
-+-...|+++-.+ ..+|++.++..|.+--.+. --....+.+...+..+|.
T Consensus 319 ~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 319 SIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 6777777766655 4579999998888543221 112244556666776774
No 13
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.35 E-value=26 Score=40.56 Aligned_cols=240 Identities=19% Similarity=0.287 Sum_probs=135.9
Q ss_pred cchhhHHhHHHHHHHhHHHHHHHhhCC--HHHHHHHHHHhC----------C-CCccHHhHHHHHHHHHHHHHhhhccCh
Q 002912 277 LDEATVANLNSIIHGNNAYVVSLLKDD--STFIQELFARLR----------S-PTTLEESKKNLVHFLHEFCGLSKSLQM 343 (867)
Q Consensus 277 LDD~t~s~LnSlIffNqveIV~~Lq~d--~~FL~eLF~~l~----------~-~~~~~e~rrdlV~FL~E~c~lsK~LQ~ 343 (867)
.|+..+..+..++.+ ||.+|-.+ ..++.+++..|- + .......++-++.|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 566777777766654 66665432 357888888775 1 111224566777788888888888775
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc--ChHHHHHHH-------------------------
Q 002912 344 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ--DPNLLRSYV------------------------- 396 (867)
Q Consensus 344 ~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh--dP~lvR~~i------------------------- 396 (867)
++-..+.+.+ ++.++...+...|..+.-++..+++- +.+.+..++
T Consensus 185 ~~~~~ll~~l--------~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQSL--------LNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHHH--------HHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 5333344333 45566666777777777777777776 222222221
Q ss_pred ------Hhc--CCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCC-CCCCch-----hhhHHHHHHHHhhHHHHHHHHH
Q 002912 397 ------VRQ--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGA-----QRDTIIEIFYEKHLGQLIDVIT 462 (867)
Q Consensus 397 ------~~q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-~~m~~~-----e~d~FL~~FY~~~~~~L~~pL~ 462 (867)
+|. .+..+++.|++.+ . ++.+...++.++.+|+.. +..... -|--|=+-||...++.|++..-
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 111 1123344444433 2 244455677777777765 333221 2223345566666777766554
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhh--chHHHHHHHHhhccchhhHHHHHHHHHH
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL--NNVVDKVLLLTRRREKYLVVAAVRFVRT 540 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~--~nll~rVl~Ll~~~~K~L~LaAlRF~R~ 540 (867)
.... ..+. +.+--|++.+++=+.-+ ++. ..++.=+++-+...+.-++.++|..+..
T Consensus 334 ~~~~---------------~~k~----~yL~ALs~ll~~vP~~v---l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 334 EADD---------------EIKS----NYLTALSHLLKNVPKSV---LLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hcCh---------------hhHH----HHHHHHHHHHhhCCHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3210 0111 22335566666444222 222 2355666666778888899999999999
Q ss_pred HhccchhHHHHHH
Q 002912 541 ILSRHDEHLINHF 553 (867)
Q Consensus 541 iI~lkDefy~ryi 553 (867)
++.-+.+....|+
T Consensus 392 ~l~~~~~~i~~hl 404 (415)
T PF12460_consen 392 ILEEAPELISEHL 404 (415)
T ss_pred HHHcCHHHHHHHH
Confidence 9988777666554
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.19 E-value=8.7 Score=42.58 Aligned_cols=253 Identities=17% Similarity=0.294 Sum_probs=126.1
Q ss_pred ccccchhhHHhHHHHHHHhHHHHHHHhhCCHH----HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHH
Q 002912 274 ARVLDEATVANLNSIIHGNNAYVVSLLKDDST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 349 (867)
Q Consensus 274 pRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~l 349 (867)
++.+++..++.+..+=-.....=.+.+..+.. .+-.|+... +...+-.+-++.++-++|.-.. .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 45677777776666544433332234444331 122344433 2344555666667777666543 45566
Q ss_pred HHHHHhcC---cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHH
Q 002912 350 FRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 426 (867)
Q Consensus 350 f~~Lv~~G---Lf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~e 426 (867)
|..+.... .+..+-..+.++|..+...+.=+|..++.+++..-.... .+.=..+++.|.. .+...+.+++.-...
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-~l~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS-QLSSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH--TT-HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH-hhcCCCcchHHHHHH
Confidence 66665422 455444488899999999999999999999887544311 0000234555554 223344555555556
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCch
Q 002912 427 ILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 505 (867)
Q Consensus 427 aLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr 505 (867)
+|..||-.+ .|=..|.+ +.+..|+.-|... .. . .+....++..+ ++||+-.=+|-
T Consensus 173 ~L~~LL~~~--------~~R~~f~~~~~v~~l~~iL~~~-~~-----~------~~~~~~Ql~Y~----~ll~lWlLSF~ 228 (312)
T PF03224_consen 173 CLQNLLRSK--------EYRQVFWKSNGVSPLFDILRKQ-AT-----N------SNSSGIQLQYQ----ALLCLWLLSFE 228 (312)
T ss_dssp HHHHHHTSH--------HHHHHHHTHHHHHHHHHHHH---------------------HHHHHHH----HHHHHHHHTTS
T ss_pred HHHHHhCcc--------hhHHHHHhcCcHHHHHHHHHhh-cc-----c------CCCCchhHHHH----HHHHHHHHhcC
Confidence 777776322 23334443 4455555533210 00 0 01223454433 23444444442
Q ss_pred --hhhhHhhchHHHHHHHHhh--ccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHH
Q 002912 506 --IKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 561 (867)
Q Consensus 506 --iK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~P 561 (867)
+-..+...+++..++.+++ .|+|..|+ |+-.+|+|+....+.+..-|+.+++..-
T Consensus 229 ~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 229 PEIAEELNKKYLIPLLADILKDSIKEKVVRV-SLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH--SHHHHHH-HHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred HHHHHHHhccchHHHHHHHHHhcccchHHHH-HHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 3334555557777777754 68999997 4889999999888777777777776543
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.78 E-value=8.2 Score=44.99 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=112.3
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.+...+.+++. .-|+.++.-+..++.... .++..++++.+...|.+.|+.++.+|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPSP--YVRKKAALALLKIYRKDP------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCH------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCch--HHHHHHHHHHHHHhccCH------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 4445555555543 667777777776665532 233333678899999999999999998888777 5
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhh--hHHHHHHHHh----hHHHHHHH
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQR--DTIIEIFYEK----HLGQLIDV 460 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~--d~FL~~FY~~----~~~~L~~p 460 (867)
++|...-..+ ..++..|.+. +...++=++..++.+|+.+.-.+ .... ..+++..... ....++.-
T Consensus 181 ~~~~~~~~~~-----~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 181 CNDDSYKSLI-----PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp CTHHHHTTHH-----HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhH-----HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 5655311110 1122233322 25667766766666666553221 1111 2222222211 11111111
Q ss_pred HHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHH
Q 002912 461 ITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRT 540 (867)
Q Consensus 461 L~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~ 540 (867)
.-... .+ .....++..++..|.-++.+...-+|+..+. .+..+.......+.-..++++
T Consensus 252 ~~~i~-------------~l-~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~-----~L~~l~~~~~~~v~~~~~~~~-- 310 (526)
T PF01602_consen 252 IRLII-------------KL-SPSPELLQKAINPLIKLLSSSDPNVRYIALD-----SLSQLAQSNPPAVFNQSLILF-- 310 (526)
T ss_dssp HHHHH-------------HH-SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHH-----HHHHHCCHCHHHHGTHHHHHH--
T ss_pred HHHHH-------------Hh-hcchHHHHhhHHHHHHHhhcccchhehhHHH-----HHHHhhcccchhhhhhhhhhh--
Confidence 10000 00 0122355667777777777555556666552 233343333233332222222
Q ss_pred HhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002912 541 ILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 588 (867)
Q Consensus 541 iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 588 (867)
++...|+.+.|... ++++..-.+..|.-. -+-||.+|++
T Consensus 311 ~l~~~~d~~Ir~~~--------l~lL~~l~~~~n~~~-Il~eL~~~l~ 349 (526)
T PF01602_consen 311 FLLYDDDPSIRKKA--------LDLLYKLANESNVKE-ILDELLKYLS 349 (526)
T ss_dssp HHHCSSSHHHHHHH--------HHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred eecCCCChhHHHHH--------HHHHhhcccccchhh-HHHHHHHHHH
Confidence 44445555544332 444444444444433 6778888884
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.42 E-value=33 Score=40.95 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhh-HHHH
Q 002912 347 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDM-HCQF 424 (867)
Q Consensus 347 ~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~gl-k~Ql 424 (867)
...+...++.|+|+.+-..|.++|.-++..+.|+|..+.. .|.. .+|+.++. ++..|++.+.. +.|+.+ ..-+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~g---i~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQG---IFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCC---HHHHHHHHHhccccCCcccchhh
Confidence 3456778889999999999999999999999999999999 4543 67887754 55555555544 233311 1112
Q ss_pred HHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc
Q 002912 425 LEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY 504 (867)
Q Consensus 425 ~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y 504 (867)
...++.. .+|....-..++. =|...++.|+.-+-. ..+....-.+|-|.+.. ++-
T Consensus 267 ~g~~~f~---g~la~~~~~~v~~-~~p~~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~ 321 (503)
T PF10508_consen 267 PGRMKFF---GNLARVSPQEVLE-LYPAFLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STV 321 (503)
T ss_pred hhHHHHH---HHHHhcChHHHHH-HHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCH
Confidence 2222211 0000000111221 223333444422211 12223334455555443 344
Q ss_pred hhhhhHhhc------hHHHHHHHHhhccchhhHHHHHHHHHHHhccch
Q 002912 505 RIKCNFLLN------NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 546 (867)
Q Consensus 505 riK~~il~~------nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkD 546 (867)
.-|..++.+ +++.++....++...-+++.|+..+-.++....
T Consensus 322 ~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 322 EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 445555222 245555555666666789999999999965543
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=91.17 E-value=51 Score=41.51 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=95.8
Q ss_pred hHhHHHHHHHHHhcCc-------HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002912 343 MVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 415 (867)
Q Consensus 343 ~~~R~~lf~~Lv~~GL-------f~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 415 (867)
+.-|..-.++|..-.. ...|..+|.+.++-||.+|+=-+.-+...+|.++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 4456666666665543 334556677888889988877777778888876532 235566666 6789
Q ss_pred CChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHH
Q 002912 416 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 495 (867)
Q Consensus 416 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL 495 (867)
.|+++.....-+|..+.... +.+ +... .+++.+|..-|-+ ...+....|+++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99999877666666664211 111 1111 1222333332311 1235556888888
Q ss_pred HHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 496 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 496 ~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
+-......- -..+++.++...++...--++++|+|++=.+.
T Consensus 244 ~~y~P~~~~------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDKE------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCcH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 664432211 12467788887777777888888888766554
No 18
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=21 Score=42.73 Aligned_cols=242 Identities=16% Similarity=0.148 Sum_probs=142.7
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
-|..|...+..+.. ..-.|.+.--|..+|.- |+=+|+ =.. -..+|++|...+.+.|..+..-++=.|.++.
T Consensus 195 ~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrg-k~P~P~-~~~------v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRG-KNPSPP-FDV------VAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred chHHHHHHhccccc-hHHHHHHHHHHHHHHcC-CCCCCc-HHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34455555543332 23455555556655542 221121 011 1357899999999999999998888999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 465 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 465 (867)
++.+..++-.+ .-. ..-.|+++|-.... +.+ .-|||++-.--+ +. |..-+.--+..+-.-+.+|+...
T Consensus 266 dg~ne~iq~vi-~~g---vv~~LV~lL~~~~~---~v~-~PaLRaiGNIvt--G~--d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 266 DGSNEKIQMVI-DAG---VVPRLVDLLGHSSP---KVV-TPALRAIGNIVT--GS--DEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred cCChHHHHHHH-Hcc---chHHHHHHHcCCCc---ccc-cHHHhhccceee--cc--HHHHHHHHhcChHHHHHHHhccC
Confidence 99998776533 211 22344555533221 111 345555522111 11 11111111111111122333221
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
|.+.. + .-.|=.++-.+. +.-.-...|+.-+++..++.+|...+.-++--|.--+.++..-.
T Consensus 334 ~~~~i-------------k----kEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 334 PKESI-------------K----KEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred cchhH-------------H----HHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 11110 0 112233333333 33333457888899999999999999889888988999998888
Q ss_pred hhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002912 546 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 546 Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 589 (867)
+.--.+||++.++++|+.++|..--. =+=++||+=++.|.+
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~~D~---~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTCPDV---KIILVALDGLENILK 436 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccCCCh---HHHHHHHHHHHHHHH
Confidence 88899999999999999999943333 347899999999976
No 19
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=90.53 E-value=45 Score=39.79 Aligned_cols=282 Identities=17% Similarity=0.243 Sum_probs=160.4
Q ss_pred HHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002912 287 SIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 366 (867)
Q Consensus 287 SlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L 366 (867)
.++.-+..+.+++|+..++|+..++.-+..+.. +-||-.+.++=+ +..+..+..-|.+.+|++-+-..|
T Consensus 3 ~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L 71 (475)
T PF04499_consen 3 CLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLL 71 (475)
T ss_pred hhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHh
Confidence 345566779999999999999999999886553 556666666434 566777888888999998888888
Q ss_pred c-CCCcchhhhhhHHHHHHHhcChH-------------HHHHHHHhcCCcchHHHHHHHHhcc-CChhhHHHHHHHHHHh
Q 002912 367 Q-SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSL 431 (867)
Q Consensus 367 ~-~~d~~ir~~atDILi~iiehdP~-------------lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~glk~Ql~eaLk~L 431 (867)
. ..+..+...|+|+|..||....+ ++|+ +. ....+..|++.|+.+ .+.++ .....++-.|
T Consensus 72 ~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~---S~~~v~~Ll~~mL~~~~~s~l-vn~v~IlieL 146 (475)
T PF04499_consen 72 SPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LV---SEETVEKLLDIMLNSQGGSSL-VNGVSILIEL 146 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-Hh---ChHHHHHHHHHHhcCCCcchH-HHHHHHHHHH
Confidence 6 34456778899999888775432 2232 22 234667788888863 33332 3333344444
Q ss_pred cCCCC--------CC----c-hhhh-----HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002912 432 LDSYT--------LS----G-AQRD-----TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 493 (867)
Q Consensus 432 LDp~~--------m~----~-~e~d-----~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~E 493 (867)
|-..+ +. . .+++ ..|..|-+ +++.+.+-|... +....-.+..+........ -=-+|||
T Consensus 147 IRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~-~l~~f~~lL~~~--~~~~~l~Tt~G~l~~PLG~-~RlkI~E 222 (475)
T PF04499_consen 147 IRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSP-RLPDFHKLLLNP--PKKPPLETTFGVLIPPLGF-ERLKICE 222 (475)
T ss_pred HHhcccccchhhccccccCCCCccchhhHHHHHHHHHH-hHHHHHHHHhch--hhccccccCCCCCCCCcch-HHHHHHH
Confidence 42111 00 0 1232 23333333 234455544432 1111111111100100000 0136788
Q ss_pred HHHHHHhhcCchh------hhhHhhchHH-HHHHHHhhccchhhHHHHHHHHHHHhc-----------------------
Q 002912 494 LLCFCVLHHPYRI------KCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILS----------------------- 543 (867)
Q Consensus 494 LL~Fcv~~H~yri------K~~il~~nll-~rVl~Ll~~~~K~L~LaAlRF~R~iI~----------------------- 543 (867)
|++=.......-. ...+...+.. .+.+. ++.+...-..
T Consensus 223 LiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (475)
T PF04499_consen 223 LIAELLHCSNMSLLNEPKGEEIVYERDGERERLLE------------QLQDALNDLEIDDEDIDDNSMDDESDSSEDSRE 290 (475)
T ss_pred HHHHHHhCCCccccCCccccchhcCcHHHHHHHHH------------HHHhhhhcccCCccccccccccccccCcccccc
Confidence 8776664443311 1112222211 11111 1111111000
Q ss_pred --------------------------------------cch----hHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHH
Q 002912 544 --------------------------------------RHD----EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 581 (867)
Q Consensus 544 --------------------------------------lkD----efy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~L 581 (867)
.++ +++..-|+..++|.-++++|..- +=+|.|+..|-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~ 369 (475)
T PF04499_consen 291 LEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKY-PWNNFLHNVVE 369 (475)
T ss_pred ccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHH
Confidence 011 56888999999999999999886 66799999999
Q ss_pred HHHHHHH-----hhChHHHHHHHHH
Q 002912 582 ELFEYIR-----KENLKSLVKYIVD 601 (867)
Q Consensus 582 ElfefIr-----~eNik~Li~hlve 601 (867)
+++-.|- ...-..|+.||.+
T Consensus 370 diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 370 DIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred HHHHHHhCCCCcccccHHHHHHHHh
Confidence 9999998 4556789999985
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.46 E-value=8.3 Score=34.84 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
.++.|...+.+++ ..-|..++.-|..+|.-+ ......+++.|.++.+-..|.++++.++..++-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 3455555555554 466777887777666542 223345567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
...|.. +..+.+. -++..|++.|- +.+..++.+...+|..|
T Consensus 78 ~~~~~~-~~~~~~~---g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 AGPEDN-KLIVLEA---GGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCcHHH-HHHHHHC---CChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 887753 3333332 26667777654 45778888888887766
No 21
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=88.34 E-value=3.5 Score=39.74 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=65.4
Q ss_pred EEEEeCC-CCCceeccce-----EEEEEeeCCCcceeEEEEec-CCCcceEEeecCCCcccccccCeEEEecCCCccccc
Q 002912 15 QVYRLND-DGKWDDQGTG-----HVTVDSMERSEELCLFVIDE-EDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 87 (867)
Q Consensus 15 KVY~L~~-~~~W~D~GTG-----~~s~~~~e~~~~~~L~V~sE-~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 87 (867)
.|..-++ .+.|.--|.| .|+.-+ ....+.+.+|--. .++..+++..|.++-.|.+.--+...|.+.+ +=.
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~-~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~--~v~ 86 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQGFSRVQIYH-HPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDAR--QVY 86 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCCCcceEEEEE-cCCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeeecCC--eEE
Confidence 3555443 4679998884 344433 3334455555333 4678899999999999999999999999986 678
Q ss_pred cccccCccchhHHHHHHHHH
Q 002912 88 ALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 88 ALSFQE~~GC~~IWe~I~~V 107 (867)
.|+|+..+.+...-+.|.+.
T Consensus 87 GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 87 GLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred eeccCCHHHHHHHHHHHHHH
Confidence 99999999998766555443
No 22
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.42 E-value=11 Score=43.29 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=96.2
Q ss_pred HHHHHhhCCHHHHHHHHHH---------hCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002912 295 YVVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 365 (867)
Q Consensus 295 eIV~~Lq~d~~FL~eLF~~---------l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~ 365 (867)
-|+.|+-.|..++..+... +.-++.....|-++++|++.|+.+-+..+. +..|+...|--+
T Consensus 47 RilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvai 116 (371)
T PF14664_consen 47 RILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHH
Confidence 3555677777777766651 112333467899999999999998543321 255677777777
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHH
Q 002912 366 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTI 445 (867)
Q Consensus 366 L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~F 445 (867)
..+++...|..+.++|.-+.=.||.++-. -.| +..|++.++. ....+...++.++-.|||.... ..|
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~t-----R~y 183 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPRT-----RKY 183 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcch-----hhh
Confidence 77789999999999999999999998643 223 2344444443 2233777788888888886532 122
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q 002912 446 IEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 446 L~~FY~~~~~~L~~pL~~~ 464 (867)
+..- .-+..|++|+.+.
T Consensus 184 l~~~--~dL~~l~apftd~ 200 (371)
T PF14664_consen 184 LRPG--FDLESLLAPFTDF 200 (371)
T ss_pred hcCC--ccHHHHHHhhhhh
Confidence 2222 2367888888763
No 23
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=82.50 E-value=6.3 Score=38.46 Aligned_cols=92 Identities=17% Similarity=0.342 Sum_probs=62.7
Q ss_pred CCCeEEEEeC-CCCCceeccc---eEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccc
Q 002912 11 ANPMQVYRLN-DDGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 86 (867)
Q Consensus 11 ~~~VKVY~L~-~~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 86 (867)
+..|-||..+ ..++|...|. -|+..- ......+++|.+-.+.+.+.+. |.++..++-|++- |.|+... +.-
T Consensus 26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r--~~~p~~~~~vlNR~~~~n~~~~-i~~~~~~e~~~~~-l~~r~~~-~~I 100 (122)
T PF06058_consen 26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKR--SSSPRYGLIVLNRRSTENFVEP-ITPDLDFELQDPY-LIYRNDN-QEI 100 (122)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEE--ETTS-ECEEEEESSSS--EEEE-E-SGGGEEEETTE-EEEEETT-TEE
T ss_pred CCeEEEEeecCCCCcEeecCcEeeEEEEEe--ecccceEEEEecCCCCCceeee-cCCCcEEEEeCCE-EEEEcCC-ceE
Confidence 3456799987 4789998764 343211 2234467888877776655554 8889999977665 5556554 578
Q ss_pred ccccccCccchhHHHHHHHHH
Q 002912 87 LALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 87 lALSFQE~~GC~~IWe~I~~V 107 (867)
+++-|-+.+-|..|.+.+..+
T Consensus 101 ~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 101 YGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEeHHHHHHHHHHHHhc
Confidence 999999999999999887654
No 24
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=80.37 E-value=25 Score=42.56 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=78.2
Q ss_pred cccchhhHHhHHHHHHHhHHH-HHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHH--HHHHHHhh-hccChHhHHHHH
Q 002912 275 RVLDEATVANLNSIIHGNNAY-VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHF--LHEFCGLS-KSLQMVQQLRLF 350 (867)
Q Consensus 275 RiLDD~t~s~LnSlIffNqve-IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~F--L~E~c~ls-K~LQ~~~R~~lf 350 (867)
+.|-.+. ++=|++.+---+- ++..|..|+.|+..+-.-|.+-- ..|.+.|.+ -+-+|++| +|..++ ++
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wl---s~k~emV~lE~Ar~v~~~~~~nv~~~----~~ 301 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWL---SDKFEMVFLEAARAVCALSEENVGSQ----FV 301 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHh---cCcchhhhHHHHHHHHHHHHhccCHH----HH
Confidence 3333443 4445554444443 45567778776655443222110 012222211 24556666 454332 22
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHH------HHhcC---------------C----c-ch
Q 002912 351 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY------VVRQE---------------G----I-PL 404 (867)
Q Consensus 351 ~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~------i~~qe---------------~----~-~L 404 (867)
.. ...+++..|..+....|.+|.-||.-+..-.|..|... ++..+ | . .|
T Consensus 302 ~~-----~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 302 DQ-----TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred HH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 22 23567788888888888888888888877777654321 11111 1 1 12
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 405 LGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 405 l~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
+ -+|-.|+.|-+.|.|.-+.+|+|.|-
T Consensus 377 v-~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 377 V-NLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred H-HHHHHHHHhhccCceEEeHHHHHHHH
Confidence 2 23444566777888888888988884
No 25
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=79.15 E-value=1.8e+02 Score=36.52 Aligned_cols=113 Identities=16% Similarity=0.341 Sum_probs=60.6
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH--hcChH-HHHHH-------HHhcCCcchHHHHHHHHhc-cCChhh
Q 002912 352 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL--NQDPN-LLRSY-------VVRQEGIPLLGLLVKGMIT-DFGEDM 420 (867)
Q Consensus 352 ~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii--ehdP~-lvR~~-------i~~qe~~~Ll~~Li~~ll~-d~d~gl 420 (867)
.+++.|+++.|-.+|.+.+..+...++-.|--+- ..+-+ |...- ++..+...+...-++.|.+ .+|+++
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 4577899999999998888776666555553221 11111 11111 1111233455666666666 677777
Q ss_pred HHHHHH-----HHHHhcCCCCCCc---------hhhhHH-HHHHHHhhHHHHHHHHHhc
Q 002912 421 HCQFLE-----ILRSLLDSYTLSG---------AQRDTI-IEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 421 k~Ql~e-----aLk~LLDp~~m~~---------~e~d~F-L~~FY~~~~~~L~~pL~~~ 464 (867)
+.++.. .|-.||...+... ...++. -.|=|..|++.|++-++..
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 777765 3444444332100 001111 1234567888888887764
No 26
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=78.65 E-value=19 Score=34.55 Aligned_cols=93 Identities=15% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccccccc
Q 002912 11 ANPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 89 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlAL 89 (867)
+.-|++|.=.. .+.|.-+.+|-+.....-..+..+|-+.+-..+..+.+..|-.+=.|+++.....++.-.+ .-++|
T Consensus 9 ~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~d~--c~~GL 86 (105)
T cd01205 9 TAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEGDD--CVVGL 86 (105)
T ss_pred EEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEeccC--cEEEE
Confidence 34578999643 4899999999988765333456888888988888999999999999999999999998653 67899
Q ss_pred cccCccchhHHHHHHH
Q 002912 90 SFQEPTGCSYIWDNIC 105 (867)
Q Consensus 90 SFQE~~GC~~IWe~I~ 105 (867)
+|-+..-+......+.
T Consensus 87 ~Fade~EA~~F~k~v~ 102 (105)
T cd01205 87 NFADETEAAEFRKKVL 102 (105)
T ss_pred EECCHHHHHHHHHHHH
Confidence 9998888877666553
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.95 E-value=74 Score=33.04 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=100.7
Q ss_pred CCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHH
Q 002912 315 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 394 (867)
Q Consensus 315 ~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~ 394 (867)
+.++.+=+.|.+++.-|+.++.-. ........++..|- .++..|...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 445556678889999999888755 11222333443333 67777777788777888888888888877665554444
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH-HHHHHhcCCCcccccc
Q 002912 395 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL-IDVITASCPQEGIAQS 473 (867)
Q Consensus 395 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L-~~pL~~~~p~~~~~~~ 473 (867)
++ ..++..|++.+ .+...-++....++|..++..-++. ..+ +..+...+.
T Consensus 91 ~~-----~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~----------------~~~~~~~l~~~~~------- 141 (228)
T PF12348_consen 91 YA-----DILLPPLLKKL-GDSKKFIREAANNALDAIIESCSYS----------------PKILLEILSQGLK------- 141 (228)
T ss_dssp HH-----HHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H------------------HHHHHHHHHHTT-------
T ss_pred HH-----HHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcH----------------HHHHHHHHHHHHh-------
Confidence 32 12444444433 3444556666777777776543311 222 222322211
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcC---chhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHH
Q 002912 474 ASSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 541 (867)
Q Consensus 474 ~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i 541 (867)
...+.+=...+++|..++..|+ -.+........+..-+.+++.-.+.-++-+|-++|..+
T Consensus 142 --------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 --------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp ---------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1133444577889999999998 44444443466777788888888888888888888775
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=76.43 E-value=10 Score=34.20 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=55.1
Q ss_pred HhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002912 510 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 586 (867)
Q Consensus 510 il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 586 (867)
+...+++..++.++...+..++..|++.+..+....++ +..++++.+.+.++++++... ...+...|+-=|-.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 34567888999999988889999999999997655544 666888899999999988653 334555554443333
No 29
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=72.16 E-value=25 Score=41.05 Aligned_cols=233 Identities=28% Similarity=0.396 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHh---hcChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCC----hhhHHHHHHH---HHHHHhcCChh
Q 002912 135 ELSTLPLILKTVT---ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLEN----IDGLHMIFKI---IKGIILLNSPQ 204 (867)
Q Consensus 135 el~nL~eIl~~i~---~~s~~~rerla~~Il~~~~Yi~kLl~LF~~cEdlen----~~~Lh~L~~I---vK~IilLNd~~ 204 (867)
.+..|....+.+. .+..+++.--.++| |+.+|-||++||+. ||-.- ..-||++|-= -|..|..--+.
T Consensus 145 awphLqlvye~~Lrf~~sp~~d~~vaK~yi--d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNN 221 (457)
T KOG2085|consen 145 AWPHLQLVYEFLLRFLESPDFDPSVAKKYI--DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINN 221 (457)
T ss_pred CchHHHHHHHHHHHHHhCcccCHHHHHHHh--hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 3456666555442 23444544334444 67999999999964 33322 3456666551 12223322233
Q ss_pred hHhhh-hcc------hhHhHHhhhcccCCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhh--h-eeeee-eehhc
Q 002912 205 IFEKI-FGD------ELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQT--Y-RVGYL-KDVVL 273 (867)
Q Consensus 205 I~E~l-lsD------e~i~~VvG~LEYDPe~p~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqt--Y-RLqYL-KDVVL 273 (867)
||=.+ .+- .-+++++|+..--=++|-+..|.-||.+ =+||+.-+-=..--||- | =+||+ ||-=|
T Consensus 222 if~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r-----vLipLhk~k~l~~yh~QLaYcivQfveKd~kl 296 (457)
T KOG2085|consen 222 IFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR-----VLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKL 296 (457)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH-----hhhccccCCCccccccccceeeeeeeccCccc
Confidence 33222 222 2367889999989999988899999963 23454322111111110 0 01222 22111
Q ss_pred ccccchhhHHhHHHHHHHhHHHHHHHhh--------CCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHH--HHhhhccCh
Q 002912 274 ARVLDEATVANLNSIIHGNNAYVVSLLK--------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQM 343 (867)
Q Consensus 274 pRiLDD~t~s~LnSlIffNqveIV~~Lq--------~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~--c~lsK~LQ~ 343 (867)
+ |. -|-.+|+ ..-.||.||=.+|+--+.+.-.|-..=+| +|+ |--|-+.|.
T Consensus 297 ~----~~--------------VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf-~qia~c~sS~HFQV 357 (457)
T KOG2085|consen 297 T----ET--------------VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLF-RQIARCVSSPHFQV 357 (457)
T ss_pred c----HH--------------HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHH-HHHHHHcCChhHHH
Confidence 1 11 0222222 11247777777666444433333333333 332 333456677
Q ss_pred HhHHHHH------HHHHhcC---cHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHH
Q 002912 344 VQQLRLF------RDLMNEG---IFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 394 (867)
Q Consensus 344 ~~R~~lf------~~Lv~~G---Lf~vi~~~L~-----~~d~~ir~~atDILi~iiehdP~lvR~ 394 (867)
..|..+| ..|+.+. +++++-.+|- |=+..+......++-+++|.||.+.-.
T Consensus 358 AEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 358 AERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7887655 3455443 5666655552 335567778888888999999887554
No 30
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.07 E-value=2.2e+02 Score=33.98 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchh------hhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc-CChh
Q 002912 347 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 419 (867)
Q Consensus 347 ~~lf~~Lv~~GLf~vi~~~L~~~d~~ir------~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g 419 (867)
..|+.+|++.+++..+---+..=|.+++ ....-++..+++.+|+..-. +++| .|+..|...+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~-~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTE-IVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHH-HHHh---hHHHHHHHHHhcccCcch
Confidence 4689999999999888777654444432 22234556688888886544 4444 5777777654332 3335
Q ss_pred hHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHH
Q 002912 420 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 499 (867)
Q Consensus 420 lk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv 499 (867)
-+.-.+|+|-+||...+-.. .+-.-| ..++.|++-|. .... .. + . +.-..++..++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~-~~~~~l-----~GiD~lL~~la----~yk~-~d--P-~--~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR-KLLGPL-----DGIDVLLRQLA----VYKR-HD--P-A--TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh-hhhcCc-----ccHHHHHhhcc----hhhc-cC--C-C--CcCHHHHHHHHHHHHHHHh
Confidence 56667899999996654210 000000 11233333332 1111 00 0 0 1124467889999999998
Q ss_pred hhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccch-hHHHHHHHhhCcHHHHHHHHHHh
Q 002912 500 LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 569 (867)
Q Consensus 500 ~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkD-efy~ryiIk~nLf~PIl~~f~~n 569 (867)
++-.-|- .|..-+.+-...+.+ +- .|..+=+|+|++-.+..-.| .=+..-++.--=++.||.+|...
T Consensus 306 m~~~nr~-~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANRE-RFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhhh-hhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 8776653 344444444444443 32 68888999999998876555 13344456666678888888743
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=68.66 E-value=4.5e+02 Score=37.20 Aligned_cols=224 Identities=16% Similarity=0.154 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
..+++-|...|++.+ ..-|.+++.-|..++. . . ..-..++..|-++.|=.+|++.+...|..|.-+|-+
T Consensus 57 aGaIP~LV~lL~sg~--~~vk~nAaaaL~nLS~---~--e----~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~s 125 (2102)
T PLN03200 57 SQAMPLLVSLLRSGT--LGAKVNAAAVLGVLCK---E--E----DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYA 125 (2102)
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhc---C--H----HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677777776543 3455566655554432 2 2 222334568999999999999999999999999988
Q ss_pred HHhcCh-HHHHHHHHhcCCcchHHHHHHHHhc--cCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHH-HHhhHHHHHH
Q 002912 384 FLNQDP-NLLRSYVVRQEGIPLLGLLVKGMIT--DFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF-YEKHLGQLID 459 (867)
Q Consensus 384 iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~--d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~F-Y~~~~~~L~~ 459 (867)
+..++. ...|..++..+|. +..|++.+-. -.|..++....-+|+.|..... .+-... =...++.|+.
T Consensus 126 LS~~~~~D~~~~~I~v~~Ga--Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-------n~~~~IIeaGaVp~LV~ 196 (2102)
T PLN03200 126 VSSGGLSDHVGSKIFSTEGV--VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD-------GFWSATLEAGGVDILVK 196 (2102)
T ss_pred HHcCcchhhhhhhhhhhcCC--hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc-------chHHHHHHcCCHHHHHH
Confidence 887764 3345444443443 1122332211 1244566666778887764331 121111 1245677766
Q ss_pred HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhcc-chhhHHHHHHHH
Q 002912 460 VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFV 538 (867)
Q Consensus 460 pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRF~ 538 (867)
-|... .+.+..+.+.+|+-...++. ..+.-++..+.+..++.|+++. +.-++-.|+-.+
T Consensus 197 LLsS~-------------------d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 197 LLSSG-------------------NSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred HHcCC-------------------CHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 55321 12333455665554444443 3577788899999999999764 457788888888
Q ss_pred HHHhccchhHHHHHHHhhCcHHHHHHHHHH
Q 002912 539 RTILSRHDEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 539 R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ 568 (867)
+++.+- +.-+.+.+++.|-..|.++++..
T Consensus 257 ~nLAs~-s~e~r~~Iv~aGgIp~LI~lL~s 285 (2102)
T PLN03200 257 EALSSQ-SKEAKQAIADAGGIPALINATVA 285 (2102)
T ss_pred HHHhcC-CHHHHHHHHHCCCHHHHHHHHhC
Confidence 887764 45588999999999999998863
No 32
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=68.53 E-value=2.1e+02 Score=32.29 Aligned_cols=219 Identities=14% Similarity=0.205 Sum_probs=121.2
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC----CC
Q 002912 295 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS----QD 370 (867)
Q Consensus 295 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~----~d 370 (867)
.|+..|-++. ++.++.-+.+.. .....-++..|.+++.+.. .....++|+.+ +. =++++.-.+.. ..
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4555554332 777777776555 2334467777887776421 11223444444 11 12233333321 11
Q ss_pred ---------cchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHH-hcCCCCCCch
Q 002912 371 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS-LLDSYTLSGA 440 (867)
Q Consensus 371 ---------~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~-LLDp~~m~~~ 440 (867)
+.+|...++.+++++.+-+..+|..++.+.+. +..+.+.|-. .+..+-.++.+.|+. +|..+...-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChh
Confidence 28999999999999998887777777776543 8888888877 456677788888873 4444454333
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc----------------
Q 002912 441 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY---------------- 504 (867)
Q Consensus 441 e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y---------------- 504 (867)
.| ..+|=+..+.+|.+ |+....+ .. ...-+++.-+++-.+|. -..|.-
T Consensus 196 ~K---~~~fn~~~L~~l~~-Ly~~~~~-------~~----~~~~~~~vh~fL~~lcT-~p~~Gv~f~d~~~~~~~~~~~~ 259 (330)
T PF11707_consen 196 TK---CKLFNEWTLSQLAS-LYSRDGE-------DE----KSSVADLVHEFLLALCT-DPKHGVCFPDNGWYPRESDSGV 259 (330)
T ss_pred hh---hhhcCHHHHHHHHH-HhcccCC-------cc----cchHHHHHHHHHHHHhc-CCCcccccCCCCcCcCcccccc
Confidence 33 44555667777777 5543111 00 00112222223222221 111111
Q ss_pred ----hhhhhHhhchHHHHHHHHhhccch--hhHHHHHHHHHHHh
Q 002912 505 ----RIKCNFLLNNVVDKVLLLTRRREK--YLVVAAVRFVRTIL 542 (867)
Q Consensus 505 ----riK~~il~~nll~rVl~Ll~~~~K--~L~LaAlRF~R~iI 542 (867)
.-+.+=..|.++.++++.+++-+- +..| +++.+++|=
T Consensus 260 ~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~L-vl~Il~~~P 302 (330)
T PF11707_consen 260 PVTINNKSFKINNKLLLNLLKKLKPWEDDRQQEL-VLKILKACP 302 (330)
T ss_pred cccccCCCCCcccHHHHHHHHHCCCCccHHHHHH-HHHHHHHCh
Confidence 123445557788888888887653 3444 677777764
No 33
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=67.77 E-value=35 Score=33.06 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCCeEEEEeCCC--CCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccccc
Q 002912 10 NANPMQVYRLNDD--GKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 87 (867)
Q Consensus 10 ~~~~VKVY~L~~~--~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 87 (867)
-+.+..|...++. ..|.--|.|-+.+.+.-+...-..=|.+-++...|+.+.|.++-.|-+=-.+.=.|.|+..++=+
T Consensus 7 ~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~tVy 86 (111)
T cd01206 7 FSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVY 86 (111)
T ss_pred ceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCCcceeecccccccccccccceee
Confidence 4456778888774 38999999888776554333222333334456788999999999999999999999999866888
Q ss_pred cccccCccchhHHHHHHHH
Q 002912 88 ALSFQEPTGCSYIWDNICN 106 (867)
Q Consensus 88 ALSFQE~~GC~~IWe~I~~ 106 (867)
.|+|..+++-+..=+.+.+
T Consensus 87 GLnF~Sk~ea~~F~~~f~~ 105 (111)
T cd01206 87 GLGFSSEQQLTKFAEKFQE 105 (111)
T ss_pred ecccCCHHHHHHHHHHHHH
Confidence 9999998876654444433
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=67.69 E-value=5.3e+02 Score=36.60 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=149.5
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 002912 355 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 434 (867)
Q Consensus 355 ~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 434 (867)
..|-++.|...|.+++..++..|+.+|..+....+..... ++..+..+.+ +.. +...+..++.+..-+|-.|...
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a-vv~agaIpPL---V~L-Lss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES-LATDEIINPC---IKL-LTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH-HHHcCCHHHH---HHH-HhcCChHHHHHHHHHHHHHHhC
Confidence 3578899999999999999999999999999988886444 5555544332 332 3456777888888888888752
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhch
Q 002912 435 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 514 (867)
Q Consensus 435 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 514 (867)
+...++-.+.. ..+++-|++.|... ...+-...++.|..++.+..- +.-+...+
T Consensus 682 --~~~~q~~~~v~---~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~--~~ei~~~~ 735 (2102)
T PLN03200 682 --IKENRKVSYAA---EDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEV--AAEALAED 735 (2102)
T ss_pred --CCHHHHHHHHH---cCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchH--HHHHHhcC
Confidence 21112221111 23566666665321 234556677888888887764 44566788
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhcc--chhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh---
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--- 589 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l--kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~--- 589 (867)
.+....++|++...-.+=.|.+-+-.+... -|+-+-.|+-.-+...|.+++|... +-+|-.+|-.||-+.++-+
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcc
Confidence 899999999988776676777766654433 3455778999999999999998655 5567888888898888865
Q ss_pred ----------------hChHHHHHHHH
Q 002912 590 ----------------ENLKSLVKYIV 600 (867)
Q Consensus 590 ----------------eNik~Li~hlv 600 (867)
+++.+|+.+|-
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l~ 841 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCLA 841 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHHH
Confidence 56778877773
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=3.9e+02 Score=34.04 Aligned_cols=91 Identities=12% Similarity=0.263 Sum_probs=59.2
Q ss_pred cCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCC
Q 002912 356 EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 435 (867)
Q Consensus 356 ~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 435 (867)
+.|.+-++..|++.++.||-.|+=-.+-++--.|+++-.|+.. .+.+++|++.|+-.-....+-.++--
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~----------~~~lL~ek~hGVL~~~l~l~~e~c~~- 209 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA----------FRKLLCEKHHGVLIAGLHLITELCKI- 209 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH----------HHHHHhhcCCceeeeHHHHHHHHHhc-
Confidence 3456778899999999999999877888888899988766543 34466778887743222222222210
Q ss_pred CCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 436 TLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 436 ~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
..+-++ .|+++++.||.-|...
T Consensus 210 ------~~~~l~-~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 210 ------SPDALS-YFRDLVPSLVKILKQL 231 (866)
T ss_pred ------CHHHHH-HHHHHHHHHHHHHHHH
Confidence 012233 3555888888887764
No 36
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.24 E-value=2e+02 Score=29.76 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=71.7
Q ss_pred HHHHHHHhcCcH-----------HHHHHHHcCC-CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002912 348 RLFRDLMNEGIF-----------DIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 415 (867)
Q Consensus 348 ~lf~~Lv~~GLf-----------~vi~~~L~~~-d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 415 (867)
.-|..|++||+. +++.++-+.. |..+...+..||-.++..+|.+ .+.+.+ ..-+..|+..|-.
T Consensus 39 ~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~---evt~~~Li~hLq~- 113 (160)
T PF11841_consen 39 TAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQ---EVTLESLIRHLQV- 113 (160)
T ss_pred HHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhc---cCCHHHHHHHHHc-
Confidence 457778889873 2444444444 7888899999999999988874 333333 3455677777765
Q ss_pred CChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002912 416 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 457 (867)
Q Consensus 416 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L 457 (867)
.++.++.-.+..|..|+=-. +..+|.++.+.|..+.+...
T Consensus 114 ~~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 78888887888888887332 22367789999988876543
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.39 E-value=3.8e+02 Score=32.53 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=120.8
Q ss_pred HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 002912 350 FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 429 (867)
Q Consensus 350 f~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 429 (867)
.+..++.|-.+++-..|.+++..++--|+=-|-.|+-+.|. .|.|++... .+.-|..++.......+.-+++=+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g---~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCG---ALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhc---chHHHHHHhccccchHHHHHHHHHHH
Confidence 44557778888888888888888877666666666655555 688887754 22233333333333345555665666
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhh
Q 002912 430 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 509 (867)
Q Consensus 430 ~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 509 (867)
-|.-..+...+ -+. -...++.|+.-|. ..+++++...|=.|+|.+-+-.-.|. .
T Consensus 221 Nlcrgk~P~P~-~~~-----v~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~iq-~ 274 (514)
T KOG0166|consen 221 NLCRGKNPSPP-FDV-----VAPILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKIQ-M 274 (514)
T ss_pred HHHcCCCCCCc-HHH-----HHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHHH-H
Confidence 55533321111 000 0112233333222 23556677777777777765555443 4
Q ss_pred HhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHH
Q 002912 510 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 581 (867)
Q Consensus 510 il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~L 581 (867)
++.-.+..|+..||....--++..|||-+=+|+ ..++.-..-+|-.+++.-+. .+..+.+..++--.||-
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~-~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLS-NLLSSSPKESIKKEACW 344 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHHHHH-HHhccCcchhHHHHHHH
Confidence 677788999999988777778899999999955 56665777777777775444 44455555555555554
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=60.39 E-value=3.5e+02 Score=32.09 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=111.5
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHh
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR 398 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~ 398 (867)
++-.+-++.++-+++.- .++|..+|..-. +...+...-..|..+|.-+...+.-||..++.+.|...-..
T Consensus 68 ~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~--- 139 (429)
T cd00256 68 DDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGS--- 139 (429)
T ss_pred HHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchh---
Confidence 34444555556665554 345555554321 22333333336778888899999999999998877421110
Q ss_pred cCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCC
Q 002912 399 QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSG 477 (867)
Q Consensus 399 qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~-~~~~L~~pL~~~~p~~~~~~~~~~~ 477 (867)
....+++.|++++-...+.+.+......|..||-.. .|=..|.+. ++..|+.-|-..
T Consensus 140 -~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~--------~~R~~f~~~~~v~~L~~~L~~~------------- 197 (429)
T cd00256 140 -DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD--------EYRFAFVLADGVPTLVKLLSNA------------- 197 (429)
T ss_pred -HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc--------hHHHHHHHccCHHHHHHHHhhc-------------
Confidence 111245566766655444555545556777776332 233445543 444554433211
Q ss_pred CcccCCcHHHHHH---HHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhh--ccchhhHHHHHHHHHHHhccc-----hh
Q 002912 478 GRVESTKPEILSN---ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRH-----DE 547 (867)
Q Consensus 478 ~~~~~~~~~ll~~---l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRF~R~iI~lk-----De 547 (867)
....+++.+ .+=+|||.-. .-...-..+++..++.+++ .|+|..|++ +-.+|+++... -.
T Consensus 198 ----~~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~-l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 198 ----TLGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRIV-LAIFRNLISKRVDREVKK 267 (429)
T ss_pred ----cccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhcccccchhh
Confidence 012244332 2334455433 2223334578888887765 688999974 77899999864 23
Q ss_pred HHHHHHHhhCcHHHHHHHH
Q 002912 548 HLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 548 fy~ryiIk~nLf~PIl~~f 566 (867)
.+.--||..++.. ++..+
T Consensus 268 ~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 268 TAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred hHHHHHHHcChHH-HHHHH
Confidence 3455566666543 44443
No 39
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.95 E-value=32 Score=41.00 Aligned_cols=276 Identities=17% Similarity=0.212 Sum_probs=155.0
Q ss_pred HhHHHHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChH-----hHHHHHHHHHhcCcHH-HHHH
Q 002912 291 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIFD-IVTD 364 (867)
Q Consensus 291 fNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~-----~R~~lf~~Lv~~GLf~-vi~~ 364 (867)
-....|++.|.+ ..++..|.+.|. |..+.+....+..||+++..++.+-+.. .-..|-+.|++.-.+. .+..
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 355689999986 679999999997 7778888889999999999999865332 2367888898877554 6678
Q ss_pred HHcCCCcchhhhhhHHHHHHHhcChHHHHHH----HHhcC----Cc----chHH-------HHHHHHhccC-------C-
Q 002912 365 ALQSQDKKLVLTGTDILILFLNQDPNLLRSY----VVRQE----GI----PLLG-------LLVKGMITDF-------G- 417 (867)
Q Consensus 365 ~L~~~d~~ir~~atDILi~iiehdP~lvR~~----i~~qe----~~----~Ll~-------~Li~~ll~d~-------d- 417 (867)
+|.......-..|+.|++.+|....+-.-.. ....+ +. .++. -+.++|.... -
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~ 206 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTF 206 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCC
Confidence 8864447777889999999886553321110 00110 11 1111 1233333320 1
Q ss_pred ------hhh-HHHHHHHHHHhcCCCCCCch----------hhhHHHHHHHHhhHHHHHHHHHhcCCCccc--cc-cc---
Q 002912 418 ------EDM-HCQFLEILRSLLDSYTLSGA----------QRDTIIEIFYEKHLGQLIDVITASCPQEGI--AQ-SA--- 474 (867)
Q Consensus 418 ------~gl-k~Ql~eaLk~LLDp~~m~~~----------e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~--~~-~~--- 474 (867)
.|. +-.++|.+-.||...+|..- +||....---+. +..+...+....+.... .. ..
T Consensus 207 G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (475)
T PF04499_consen 207 GVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ-LQDALNDLEIDDEDIDDNSMDDESDSS 285 (475)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcHHHHHHHHHH-HHhhhhcccCCccccccccccccccCc
Confidence 232 56789999999999998531 455444332222 23333332210000000 00 00
Q ss_pred CCCC--cccCCcHH---------------H-HHHHHHHHHHHHhhcC---chhhhhHhhchHHHHHHHHhh--ccchhhH
Q 002912 475 SSGG--RVESTKPE---------------I-LSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTR--RREKYLV 531 (867)
Q Consensus 475 ~~~~--~~~~~~~~---------------l-l~~l~ELL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~--~~~K~L~ 531 (867)
.+.. .+...... . -..+++.-.=-.+.-+ -.+|.-++..+++..++.|.- +-+-||.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH 365 (475)
T PF04499_consen 286 EDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLH 365 (475)
T ss_pred cccccccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHH
Confidence 0000 00000000 0 0000000000001111 135777888889999998854 5678999
Q ss_pred HHHHHHHHHHhccc-----hhHHHHHH-HhhCcHHHHHHHHHHh
Q 002912 532 VAAVRFVRTILSRH-----DEHLINHF-VKNNLLKPIVDAFVAN 569 (867)
Q Consensus 532 LaAlRF~R~iI~lk-----Defy~ryi-Ik~nLf~PIl~~f~~n 569 (867)
...-.++..|+... ..++..++ .+.+|..=|++....+
T Consensus 366 ~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 366 NVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred HHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 99999999999332 22333333 4677777788887765
No 40
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=58.96 E-value=3.3e+02 Score=31.23 Aligned_cols=170 Identities=15% Similarity=0.239 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH----HHHHHHhc-CCcchHHHHHHH----------
Q 002912 347 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQ-EGIPLLGLLVKG---------- 411 (867)
Q Consensus 347 ~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~l----vR~~i~~q-e~~~Ll~~Li~~---------- 411 (867)
.+++..+.++|++..+-..|..=+-..|-.++.|+..++-+.+.. ...|+.++ ++ ++..|+++
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pe--il~~L~~gy~~~dial~~ 143 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPE--ILDILLRGYENPDIALNC 143 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--TH--HHHHHHHGGGSTTTHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHH--HHHHHHHHhcCccccchH
Confidence 578888888899988888888888777777777777777665432 34555554 21 11222211
Q ss_pred ----------------Hhcc------------CChhhHHHHHHHHHHhcCCCCCCchhh---hHHHHHHHHhhHHHHHHH
Q 002912 412 ----------------MITD------------FGEDMHCQFLEILRSLLDSYTLSGAQR---DTIIEIFYEKHLGQLIDV 460 (867)
Q Consensus 412 ----------------ll~d------------~d~glk~Ql~eaLk~LLDp~~m~~~e~---d~FL~~FY~~~~~~L~~p 460 (867)
++.+ .+-.+.+-.+..+|.||-. ++ .+||..-|+.... .+.-
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~------hk~~~a~fl~~n~d~ff~-~~~~ 216 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR------HKKLVAEFLSNNYDRFFQ-KYNK 216 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS------SHHHHHHHHHHTHHHHHH-HHHH
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHH-HHHH
Confidence 1111 1222222222223322211 12 3566655655555 2333
Q ss_pred HHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-hhhHhhchHHHHHHHHhhccchhhHHHHHHHHH
Q 002912 461 ITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVR 539 (867)
Q Consensus 461 L~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R 539 (867)
|+.+ + + -.++.+.+-.|-||| ...|.|.+ ..||-+.+-+.-+..||+.+.|.++.-|...||
T Consensus 217 Ll~s--~--------N----YvtkrqslkLL~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 217 LLES--S--------N----YVTKRQSLKLLGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HCT---S--------S----HHHHHHHHHHHHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HccC--C--------C----eEeehhhHHHHHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 3331 0 0 012334444444443 34555555 567777788899999999999999999988777
Q ss_pred HHh
Q 002912 540 TIL 542 (867)
Q Consensus 540 ~iI 542 (867)
-.|
T Consensus 280 vFV 282 (335)
T PF08569_consen 280 VFV 282 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 41
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.67 E-value=4.7e+02 Score=34.11 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=47.4
Q ss_pred HcCCCcchhhhhhHHHHHHHh---cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCC
Q 002912 366 LQSQDKKLVLTGTDILILFLN---QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 435 (867)
Q Consensus 366 L~~~d~~ir~~atDILi~iie---hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 435 (867)
++++---+|.-||+++..+-+ .||+.+++ .+....+.|.++.+..++.+.+-||+.++-..
T Consensus 471 f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~---------ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 471 FQSPYGYLRARACWVLSQFSSIDFKDPNNLSE---------ALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred hcCchhHHHHHHHHHHHHHHhccCCChHHHHH---------HHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 355666689999999988764 45666665 45566788888999999999999999998554
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.15 E-value=1.2e+02 Score=38.56 Aligned_cols=247 Identities=15% Similarity=0.164 Sum_probs=136.0
Q ss_pred HHHHHHhhCCHHHHHHHHH--------Hh---CCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002912 294 AYVVSLLKDDSTFIQELFA--------RL---RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 362 (867)
Q Consensus 294 veIV~~Lq~d~~FL~eLF~--------~l---~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi 362 (867)
.-|+.-.|..+.-|.+|+. +| .++..+....--+|++|.-||.=+ ..+|++|.+.+|-.++
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~--------pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGS--------PLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCC--------hHHHHHHHHhhHHHHH
Confidence 3466667777777777774 11 122233445556777777766532 4579999999999999
Q ss_pred HHHHcCCCcchhhhhhHHH-----------HHHHhc------------ChHHHHHHHHhc--------CC----cchHHH
Q 002912 363 TDALQSQDKKLVLTGTDIL-----------ILFLNQ------------DPNLLRSYVVRQ--------EG----IPLLGL 407 (867)
Q Consensus 363 ~~~L~~~d~~ir~~atDIL-----------i~iieh------------dP~lvR~~i~~q--------e~----~~Ll~~ 407 (867)
++.|..-++.--..-++.| ..+++. |-++++..+--+ ++ ++-.++
T Consensus 432 ~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 432 KRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNI 511 (1051)
T ss_pred HHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchh
Confidence 9999866553222222211 112211 111222211111 11 011122
Q ss_pred HHHHHh-ccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 002912 408 LVKGMI-TDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 486 (867)
Q Consensus 408 Li~~ll-~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ 486 (867)
+.+++- ...|+|-.--.-+.++ .++..--..+.-+.++-|-+..++.|++...... ++.|++ -
T Consensus 512 ~~ri~~q~~~~~~t~~~~~dkl~--~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA-----------~~~VR~---k 575 (1051)
T KOG0168|consen 512 DSRIIEQINEDTGTSRKQQDKLN--GSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSA-----------NPDVRY---K 575 (1051)
T ss_pred hhhhhhhhccCcccchhhhhhcC--CchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccC-----------CchhhH---H
Confidence 222111 0112222111111111 1111000012336778888888899988775431 122322 3
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHH
Q 002912 487 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 487 ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f 566 (867)
-|.-|..|.+|--- --|+--+-++++...++-++.+++-.+.+.||...--+...==|.|..|+++.++|.-|=.+.
T Consensus 576 cL~Ailrlvy~s~s---eli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 576 CLSAILRLVYFSNS---ELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred HHHHHHHHHhhCCH---HHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 56677777777652 234555556677778888899999999999999887766555556778889999998887766
Q ss_pred H
Q 002912 567 V 567 (867)
Q Consensus 567 ~ 567 (867)
.
T Consensus 653 ~ 653 (1051)
T KOG0168|consen 653 V 653 (1051)
T ss_pred c
Confidence 5
No 43
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=51.97 E-value=1.2e+02 Score=35.48 Aligned_cols=192 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCC-------hhhHhhhhcchhHhHHhhhccc------CCCCCC
Q 002912 164 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNS-------PQIFEKIFGDELMMDIIGSLEY------DPDVPH 230 (867)
Q Consensus 164 ~~~Yi~kLl~LF~~cEdlen~~~Lh~L~~IvK~IilLNd-------~~I~E~llsDe~i~~VvG~LEY------DPe~p~ 230 (867)
+..++.+|+++|+...-.|-.--...|.+|.....-+-. ..+++.+...+...||--+||. .=..|-
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Q ss_pred ccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHhHHHHHHHhhCCHH----H
Q 002912 231 VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDST----F 306 (867)
Q Consensus 231 ~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----F 306 (867)
+..|..||.+ |+||-+--......-..++.. +++++..|+. +
T Consensus 211 k~eh~~fl~~------------------------------vllPLh~~~~~~~y~~~L~~~----~~~f~~kdp~l~~~~ 256 (409)
T PF01603_consen 211 KEEHKQFLRK------------------------------VLLPLHKSPHLSSYHQQLSYC----VVQFLEKDPSLAEPV 256 (409)
T ss_dssp -HHHHHHHHH------------------------------TTGGGGGSTGGGGTHHHHHHH----HHHHHHH-GGGHHHH
T ss_pred cHHHHHHHHH------------------------------HHHHHhcCCcHHHHHHHHHHH----HHHHHHhCchhHHHH
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc------------------------------
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE------------------------------ 356 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~------------------------------ 356 (867)
++-|+.----.+...+ |.||+|+-.+...+++..=..+-..|.+.
T Consensus 257 i~~llk~WP~t~s~Ke-----v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~ 331 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKE-----VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS 331 (409)
T ss_dssp HHHHHHHS-SS-HHHH-----HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH
T ss_pred HHHHHHhCCCCCchhH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_pred ----CcHHHHHHHH-----cCCCcchhhhhhHHHHHHHhcChHHHHH
Q 002912 357 ----GIFDIVTDAL-----QSQDKKLVLTGTDILILFLNQDPNLLRS 394 (867)
Q Consensus 357 ----GLf~vi~~~L-----~~~d~~ir~~atDILi~iiehdP~lvR~ 394 (867)
.++++|-.+| .|=+..+|..|..++-.+.+.||.+..+
T Consensus 332 ~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 332 QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
No 44
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.14 E-value=6.8e+02 Score=32.31 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=72.0
Q ss_pred hHHHHHHHhHHH-HHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHH--hh-hccChHh----HHHHHHHHHh
Q 002912 284 NLNSIIHGNNAY-VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG--LS-KSLQMVQ----QLRLFRDLMN 355 (867)
Q Consensus 284 ~LnSlIffNqve-IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~--ls-K~LQ~~~----R~~lf~~Lv~ 355 (867)
.+.+-|+.-.+. |...|-+|..+|..||+.+.-+.. ...-+..|+.-+.. +. |..|.-. +..++..|+.
T Consensus 79 ~i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~p---ln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~ 155 (838)
T KOG2073|consen 79 NISCEILTSDVWPISEALVEDESLLSLLYSILEHEPP---LNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLK 155 (838)
T ss_pred cHHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCc---ccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHH
Confidence 455666666664 555688899999999999986521 11122222111111 11 1122222 4455545544
Q ss_pred c-CcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 356 E-GIFDIVTDALQSQ--DKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 356 ~-GLf~vi~~~L~~~--d~~ir~~atDILi~iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
| |+..++.+.|+.- |.. ..| ..|-+++..++ ++..|++++....++++++-..+.|+.+
T Consensus 156 hi~~stlMD~Llkli~~de~--------------~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~i 218 (838)
T KOG2073|consen 156 HIDISTLMDFLLKLISTDEP--------------ESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAI 218 (838)
T ss_pred HcCccHHHHHHHHhccccCC--------------CCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 3 5555555555421 211 112 23344444443 7788888888888888888777877777
Q ss_pred cC
Q 002912 432 LD 433 (867)
Q Consensus 432 LD 433 (867)
.-
T Consensus 219 v~ 220 (838)
T KOG2073|consen 219 VR 220 (838)
T ss_pred Hh
Confidence 63
No 45
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=49.71 E-value=1.9e+02 Score=30.36 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=98.1
Q ss_pred chhhhhhHHHHHHHhc-ChHHHHHHHHh----c--CCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCC--Cch--
Q 002912 372 KLVLTGTDILILFLNQ-DPNLLRSYVVR----Q--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL--SGA-- 440 (867)
Q Consensus 372 ~ir~~atDILi~iieh-dP~lvR~~i~~----q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m--~~~-- 440 (867)
++|..|.-.|..++.+ +|-.+-+|--. . .+..---.|...++.|.++.++.-...+|..|||.... ..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788899999999998 88777666432 1 01111123344567899999999999999999986321 001
Q ss_pred ---hhhHHHHHHHHh--hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc-hhhhhHhhch
Q 002912 441 ---QRDTIIEIFYEK--HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY-RIKCNFLLNN 514 (867)
Q Consensus 441 ---e~d~FL~~FY~~--~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y-riK~~il~~n 514 (867)
.+-.|..+.-.= .+..|=.-|... .. ....+.++.+++..|+-.|+.=+| |++.= +-..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~-----L~---------~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~-ll~~ 145 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLA-----LQ---------AEKSPPVLTQLLKCLAVLVQATPYHRLPPG-LLTE 145 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHH-----Hh---------cccccHHHHHHHHHHHHHHccCChhhcCHh-HHHH
Confidence 111344332210 111111111110 00 112456788999999999999999 44432 2234
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
++..|..++..++.-.+++|+=+|-.+++..
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 5566667788899999999999998888764
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.08 E-value=22 Score=26.05 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 387 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi~iieh 387 (867)
|++.+-..+++++..+|.+|+.-|..|.+|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 577888899999999999999999888765
No 47
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=47.92 E-value=4.1e+02 Score=29.14 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 588 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 588 (867)
.+...+.|+.....-.+.-|||.+=.+= .+.-..++|+..+.+..++.+|..+.++.||++ +|-||+-|.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 4566788888888888888888765432 344468999999999999999999999999985 677888773
No 48
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=47.81 E-value=52 Score=33.45 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCC---C-CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 002912 423 QFLEILRSLLDSYT---L-SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 498 (867)
Q Consensus 423 Ql~eaLk~LLDp~~---m-~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fc 498 (867)
.++++|-.+|+.+. . ..+++|+|+++|.+-|...|=.|-. .....+-..++++||.|
T Consensus 100 ~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~-------------------~K~~~ik~~if~il~~~ 160 (171)
T PF12922_consen 100 RILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEI-------------------VKNKSIKDAIFRILGTA 160 (171)
T ss_pred HHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHh-------------------hccHHHHHHHHHHHHHH
Confidence 34445555554322 1 1248999999988877644311111 11334667999999999
Q ss_pred HhhcCch
Q 002912 499 VLHHPYR 505 (867)
Q Consensus 499 v~~H~yr 505 (867)
|.+|.+-
T Consensus 161 vk~h~h~ 167 (171)
T PF12922_consen 161 VKKHNHA 167 (171)
T ss_pred HHHcccc
Confidence 9999874
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=46.72 E-value=74 Score=29.81 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=45.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
|++.+=..+.++|..+|-.|++-|..|..+-...+=.+.- -+++.|++ ++.|.++.++.- ++.|-.|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~-----~IF~~L~k-l~~D~d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN-----EIFDALCK-LSADPDENVRSA-AELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHcCCchhHHHH-HHHHHHH
Confidence 3455556778999999999999999988776544333322 26677776 457888888743 3444333
No 50
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.04 E-value=3.4e+02 Score=31.49 Aligned_cols=63 Identities=19% Similarity=0.401 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHH
Q 002912 329 HFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV 396 (867)
Q Consensus 329 ~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i 396 (867)
.+|.-+..+-++...+ .+...+- .|++++-.+|..+|..++.++.++|..+++..|..+-.|+
T Consensus 342 ~yL~ALs~ll~~vP~~---vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS---VLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHHhhCCHH---HHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3455566666666522 2222222 2889999999999999999999999999999999988865
No 51
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=45.46 E-value=50 Score=37.69 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=66.4
Q ss_pred hhHhhchHHHHHHHHhh-ccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHH-HHHhCCC--CcchHHHHHHH
Q 002912 508 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 583 (867)
Q Consensus 508 ~~il~~nll~rVl~Ll~-~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~-f~~ng~R--~NLlnSA~LEl 583 (867)
-|+++++++.++..|-. ....-.+..++||+.++|+.-++= .+...++..||+++ +..-|.. ..-+.....+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 48899999999999954 455688899999999999986664 56677999999999 7655543 56677777777
Q ss_pred HHHHHh--hChHHHHHHHHH
Q 002912 584 FEYIRK--ENLKSLVKYIVD 601 (867)
Q Consensus 584 fefIr~--eNik~Li~hlve 601 (867)
+..|.. ..-..|+.+..+
T Consensus 80 L~~lc~~i~~~P~ll~~ff~ 99 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFE 99 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 776643 222344444443
No 52
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=44.59 E-value=5.1e+02 Score=29.23 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccC---C-----
Q 002912 347 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDF---G----- 417 (867)
Q Consensus 347 ~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~---d----- 417 (867)
..+.+++++.- ++.|.-.|+.....+...+.-+|..|+.++. .+.|.. ++.=+.+ +..|.+++--.. .
T Consensus 47 ~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v-~~~fd~~-~~~l~kll~~~~~~~~~~~~~ 123 (330)
T PF11707_consen 47 LELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREV-LRSFDFS-LKSLPKLLTPRKKEKEKDSES 123 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHH-HHhcCCc-hhhHHHHhccccccccccccc
Confidence 46778887665 8999999999988888888999999999554 666653 3321111 111222221110 0
Q ss_pred ----hhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002912 418 ----EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 493 (867)
Q Consensus 418 ----~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~E 493 (867)
+.++..+..-+-.+|...+- .-+.++|.. ..++..++... ..=.+++...+++
T Consensus 124 ~~~~~siR~~fI~F~Lsfl~~~~~--~~~~~lL~~------~~~~~~l~k~l---------------~~D~~~~v~~iL~ 180 (330)
T PF11707_consen 124 SKSKPSIRTNFIRFWLSFLSSGDP--ELKRDLLSQ------KKLMSALFKGL---------------RKDPPETVILILE 180 (330)
T ss_pred cccCcCHHHHHHHHHHHHHccCCH--HHHHHHHHc------CchHHHHHhcc---------------cCCCHHHHHHHHH
Confidence 13333333333333322110 011122221 11123333211 1114567778888
Q ss_pred HHHHHHhhcC---chhhhhHhhchHHHHHHHHhhccch----hhHHHHHHHHHHH
Q 002912 494 LLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREK----YLVVAAVRFVRTI 541 (867)
Q Consensus 494 LL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~i 541 (867)
.|.=.|-+.. ...|..+++...+.+++.|-...+. -++=.|-+||..+
T Consensus 181 ~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~l 235 (330)
T PF11707_consen 181 TLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLAL 235 (330)
T ss_pred HHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHH
Confidence 8886666555 4668999999999999998877666 6777777777763
No 53
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.43 E-value=3.1e+02 Score=26.98 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++..+..++....+.+ - .+-++|.+.+.-....+.. ..+|.--|.+.++.+...|..+|=+|+.
T Consensus 6 ~~~li~kATs~~~~~~Dw---~-~~l~icD~i~~~~~~~kea----------~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW---S-LILEICDLINSSPDGAKEA----------ARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H---H-HHHHHHHHHHTSTTHHHHH----------HHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH---H-HHHHHHHHHHcCCccHHHH----------HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456666666665544433 2 2336787766554444444 3577788899999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChh---hHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g---lk~Ql~eaLk~LL 432 (867)
+....++..+.++ .+++.|.+++-...... ++..+.+.|..+=
T Consensus 72 Ncg~~f~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 72 NCGPRFHREVASK---EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HSHHHHHHHHTSH---HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhHH---HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 9977777766553 48888887766544443 7888877776663
No 54
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=43.73 E-value=1.1e+02 Score=37.74 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHH
Q 002912 484 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 563 (867)
Q Consensus 484 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl 563 (867)
+..+++-||-| |-+-+- .|.+|+++|.+.++..++..+.--++-.+++++|..+-..|+-..... -..+++-.+
T Consensus 436 ~~~~lgai~Nl----Vmefs~-~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-~~ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNL----VMEFSN-LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-LAKIPANLI 509 (678)
T ss_pred HHHHHHHHHHH----Hhhccc-HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-HHHhhHHHH
Confidence 34455555554 333222 378999999999999999999888889999999999877776433222 223444444
Q ss_pred HHHHHhCCCCcchHHHHHH-HHHHHHh--hChHHHHHHHHHhhHhhcccc
Q 002912 564 DAFVANGNRYNLLNSAVLE-LFEYIRK--ENLKSLVKYIVDSFWNQLVNF 610 (867)
Q Consensus 564 ~~f~~ng~R~NLlnSA~LE-lfefIr~--eNik~Li~hlve~y~~~l~~i 610 (867)
..|..+.+- +|+| .|...|. -|-..-+.||+++|.+.+.++
T Consensus 510 ~~l~nd~d~------~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPDW------AVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCCH------HHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHH
Confidence 555444332 4444 3444443 466788999999999988654
No 55
>PF05536 Neurochondrin: Neurochondrin
Probab=43.64 E-value=6.9e+02 Score=30.48 Aligned_cols=205 Identities=15% Similarity=0.204 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-------CCcchhhhh
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-------QDKKLVLTG 377 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~-------~d~~ir~~a 377 (867)
.=|.+....|+... ++.|.=++.++.-+|. +.......|...|.++ | ++.+.-.|+. +....+..|
T Consensus 5 ~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 34777888888766 6888889988888776 3333334444566433 5 5777777765 224467888
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002912 378 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 457 (867)
Q Consensus 378 tDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L 457 (867)
.-||.++.. +|.+.++.-+ ..-+-.|++.+....+.++..-..+.|..+.- +-.|+ .. +.....++.|
T Consensus 78 vsvL~~f~~-~~~~a~~~~~----~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~--~a---Ll~~g~v~~L 145 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQM----VSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGA--KA---LLESGAVPAL 145 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhH--HH---HHhcCCHHHH
Confidence 999988776 7876554211 11334566767666665666666677777751 11121 11 2223455666
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHH
Q 002912 458 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 537 (867)
Q Consensus 458 ~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF 537 (867)
+.-+... ...-+...+++..|+--...+... ++.-.-..++.++.......++-.+..+++|
T Consensus 146 ~ei~~~~-----------------~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~ 207 (543)
T PF05536_consen 146 CEIIPNQ-----------------SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEF 207 (543)
T ss_pred HHHHHhC-----------------cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 6555331 011223334444444444433322 3444444667777777777777777777888
Q ss_pred HHHHhccch
Q 002912 538 VRTILSRHD 546 (867)
Q Consensus 538 ~R~iI~lkD 546 (867)
+-.++...+
T Consensus 208 L~~~L~~~~ 216 (543)
T PF05536_consen 208 LSAFLPRSP 216 (543)
T ss_pred HHHhcCcCC
Confidence 877777664
No 56
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.99 E-value=1.6e+02 Score=35.50 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---Hc-CC--CcchhhhhhHHHHHHHhcChHHHHHHH
Q 002912 324 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQ--DKKLVLTGTDILILFLNQDPNLLRSYV 396 (867)
Q Consensus 324 rrdlV~FL~E~c~lsK~LQ-~~~R~~lf~~Lv~~GLf~vi~~~---L~-~~--d~~ir~~atDILi~iiehdP~lvR~~i 396 (867)
..+++.+|++.+.-++.-+ ...+..+.++|-+.|.-.++... +. .. ...+|.+|+--|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777766654322 33456677899999876655433 33 22 235899999988888999999999876
Q ss_pred Hh
Q 002912 397 VR 398 (867)
Q Consensus 397 ~~ 398 (867)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 65
No 57
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=42.75 E-value=1e+03 Score=33.07 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=46.2
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 378 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 378 tDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
.-++..++++|+. .|..+.+.....++.+|...+-+...+.||..++.+|..|+
T Consensus 585 L~Li~~V~~~s~~-ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 585 LRLISSVVRNSEQ-ARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHhcCHH-HHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3555678888755 78888888778889999999999999999999999999997
No 58
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.68 E-value=2.4e+02 Score=28.27 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC
Q 002912 309 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 388 (867)
Q Consensus 309 eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehd 388 (867)
++..+..++....+.+ ..+-++|.+.++-....|.. +.+|.--|++.++.+...|..+|-+|+..-
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~a----------~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKDC----------LKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 4455555555433333 44557887776544444543 356777788999999999999999999999
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 389 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 389 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
...++..+.+ ..+++.|++++-...++.++.-+.+.|+.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888877655 3477887776655577888888888777764
No 59
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=40.73 E-value=75 Score=37.99 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=91.3
Q ss_pred HHHHHHHhhCC-------HHHHHHHHHHhCCCCccHHhHHHHHHHH---HHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002912 293 NAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 362 (867)
Q Consensus 293 qveIV~~Lq~d-------~~FL~eLF~~l~~~~~~~e~rrdlV~FL---~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi 362 (867)
|.-|+++|..+ +..++=+|.-+.++++...-|.-++.|+ +..+.. . .+......+..+..|+.+.+
T Consensus 300 q~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~---~-~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 300 QEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH---I-SPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred HHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh---c-CHHHHHHHHHHHHhcCcccc
Confidence 55677776643 2345555555666655556677788888 443332 2 33455677777878888877
Q ss_pred HH----HHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 363 TD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 363 ~~----~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
.. --...+...|..+-+.|-.+...+|.++.+ +..++..|-+.| .+..++++..+-|||-.|+
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 31 223456678999999999999999998754 567888888888 7778899999999988885
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.72 E-value=9.7e+02 Score=30.80 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCC
Q 002912 360 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 437 (867)
Q Consensus 360 ~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 437 (867)
++|...|.+.|..+|-.|.+.|...|.+||+.+.++- .+. ++. +.|.|..++.-.+|.+-.|++..|.
T Consensus 316 niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tI----leC-L~DpD~SIkrralELs~~lvn~~Nv 383 (866)
T KOG1062|consen 316 NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STI----LEC-LKDPDVSIKRRALELSYALVNESNV 383 (866)
T ss_pred HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHH----HHH-hcCCcHHHHHHHHHHHHHHhccccH
Confidence 6777888999999999999999999999999876642 222 222 4788888888888988888887764
No 61
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=38.70 E-value=5.7e+02 Score=28.10 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHHhcCC-CCCCc--------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHH
Q 002912 417 GEDMHCQFLEILRSLLDS-YTLSG--------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEI 487 (867)
Q Consensus 417 d~glk~Ql~eaLk~LLDp-~~m~~--------~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~l 487 (867)
|.++-.-+.-.+|-||.- +.+.. .-++.++..|++..+..|+--+... +.+ .+-
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~-~~~----------------~~f 195 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASS-PQE----------------SDF 195 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhC-ccc----------------cch
Confidence 445555566778888863 33221 1457899999998887776666542 100 011
Q ss_pred HHHHHHHHHHHHhhcCc
Q 002912 488 LSNICELLCFCVLHHPY 504 (867)
Q Consensus 488 l~~l~ELL~Fcv~~H~y 504 (867)
..+++|++++.++.+.-
T Consensus 196 ~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 196 NLLLLEIIYLLFKGQDP 212 (266)
T ss_pred hhHHHHHHHHHHcCCCH
Confidence 13899999999988854
No 62
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.47 E-value=4.5e+02 Score=28.92 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchh
Q 002912 362 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 441 (867)
Q Consensus 362 i~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 441 (867)
+...|.++|..+|..|+..|..+++.=|.-. +-+++-..|++..++.| +...++..- ..+|..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhh
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHH
Q 002912 442 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 521 (867)
Q Consensus 442 ~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~ 521 (867)
-..+++.+++++ .++......=..+.+||-+.+.+|.--+ .=+..+.+..+++
T Consensus 78 ~~~i~~~l~~~~-------------------------~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQNV-------------------------DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHhC-------------------------ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Q ss_pred Hhh-ccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHH
Q 002912 522 LTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 522 Ll~-~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f 566 (867)
++. -|+.=--+.+.+.+|.++..=| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=1.8e+02 Score=36.45 Aligned_cols=248 Identities=19% Similarity=0.219 Sum_probs=140.3
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCC-C
Q 002912 359 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-L 437 (867)
Q Consensus 359 f~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-m 437 (867)
+.-|..++++.++-+|.+++.....+-..+|.+++. ..|+..|-+++ .|.++++-+-...+|..+.+..+ +
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-------~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-------SGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc-------cchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCC
Confidence 444555667888899999998888888888887653 55777766544 58899987777777777776553 2
Q ss_pred Cch-hhhHHHHHHHH---hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-----hh
Q 002912 438 SGA-QRDTIIEIFYE---KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-----KC 508 (867)
Q Consensus 438 ~~~-e~d~FL~~FY~---~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-----K~ 508 (867)
... .--.+++.+-. .|-.|---+++..... . . +. +..=...||+.++=..+|-.-+. |-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~-y----~-p~------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAE-Y----V-PK------DSREAEDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh-c----C-CC------CchhHHHHHHHhhhhhccCCcceEeehHHH
Confidence 111 11122222221 2333333333321100 0 0 00 00001234555544333332211 11
Q ss_pred hH--------hhchHHHHHH-HH--hhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcH---HHH------HHHHHH
Q 002912 509 NF--------LLNNVVDKVL-LL--TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFVA 568 (867)
Q Consensus 509 ~i--------l~~nll~rVl-~L--l~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf---~PI------l~~f~~ 568 (867)
+. ..+.+..|+. .| +-+...-+...|||=++-++...++ +.+.=++.=.+ +|| ++++.+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~~ 341 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILIE 341 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence 11 2234445553 22 4467777788999999999999998 88887877554 465 455555
Q ss_pred hCCCCcchHHHHHHHHHHHHh-------hChHHHH---------HHHHHhhHhhcc-cccch-----hhHHHHHHhhhhh
Q 002912 569 NGNRYNLLNSAVLELFEYIRK-------ENLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQC 626 (867)
Q Consensus 569 ng~R~NLlnSA~LElfefIr~-------eNik~Li---------~hlve~y~~~l~-~i~yv-----~tF~~L~~ryeq~ 626 (867)
-.+..|+-. ..-||-+|--- +-|+.+= +.+|..+=+.++ +++|| .+|+.+-.+|.|.
T Consensus 342 la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 342 LANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 556667766 66677776422 2222211 335555555555 56676 3788888888886
Q ss_pred cc
Q 002912 627 LE 628 (867)
Q Consensus 627 ~~ 628 (867)
-+
T Consensus 421 ~~ 422 (734)
T KOG1061|consen 421 YE 422 (734)
T ss_pred hh
Confidence 43
No 64
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.52 E-value=4.8e+02 Score=26.03 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++.....++....+. ...+-|+|.+...-+...|.. +.+|..-|++.++.+...|..+|-+|+.
T Consensus 5 ~~~~I~kATs~~l~~~d----w~~ileicD~In~~~~~~k~a----------~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 5 FDELIEKATSELLGEPD----LASILEICDMIRSKDVQPKYA----------MRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred HHHHHHHHcCcccCccC----HHHHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45566666655432222 334456777765433333433 4567777889999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
+--..++..+.. ..+++.|++++-...++.++..+.+.+..+=
T Consensus 71 NCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 71 NCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 866555554443 4488888876655667777777777776664
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.36 E-value=1.3e+03 Score=30.82 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHh--HHHHHHHhhCCHHHHHHHHHHhCCCCccHHhH--HHHHHHHHHHHHhhhccChHhHHHHHHHHHh
Q 002912 280 ATVANLNSIIHGN--NAYVVSLLKDDSTFIQELFARLRSPTTLEESK--KNLVHFLHEFCGLSKSLQMVQQLRLFRDLMN 355 (867)
Q Consensus 280 ~t~s~LnSlIffN--qveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~r--rdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~ 355 (867)
.....+++++-.+ +.+.+.+.. .+|+.++..+...-...+.. .++..-|-|+.. ..-.+++
T Consensus 178 ~a~rA~~a~~~~~~~~~~~~~~~~---~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e------------~~pk~l~ 242 (1075)
T KOG2171|consen 178 AAVRALGAFAEYLENNKSEVDKFR---DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE------------SEPKLLR 242 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH---HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh------------hchHHHH
Q ss_pred cCcHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh------------
Q 002912 356 EGIFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE------------ 418 (867)
Q Consensus 356 ~GLf~vi~~~L~-----~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~------------ 418 (867)
.-+-.+|++.|+ +-+..+|..|.++|+++++.-|.+.|. ...-+.+|+-.+...|-...+.
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~--~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK--LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh--chhhhccHHHHHHHhcCCcccchhhccccccccc
Q ss_pred ------hhHHHHHHHHHHhcCCCCCCch---hhhHHHH---HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 002912 419 ------DMHCQFLEILRSLLDSYTLSGA---QRDTIIE---IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 486 (867)
Q Consensus 419 ------glk~Ql~eaLk~LLDp~~m~~~---e~d~FL~---~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ 486 (867)
-+..|..+-|-.=|-|+.+-.+ .-..+|. ++|.|-+=.-+..+-++|+ +.....
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--------------~~m~~~ 386 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--------------DVMIGN 386 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--------------HHHHHH
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHH-hccchhHHHHHHHhhCcHHHHHHH
Q 002912 487 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI-LSRHDEHLINHFVKNNLLKPIVDA 565 (867)
Q Consensus 487 ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i-I~lkDefy~ryiIk~nLf~PIl~~ 565 (867)
+ .+++.-|+..++.+|--++.||+-.+-.+ --+..++=..| +..+-|-+-.
T Consensus 387 l-------------------------~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~---~e~l~~aL~~ 438 (1075)
T KOG2171|consen 387 L-------------------------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH---HERLPPALIA 438 (1075)
T ss_pred H-------------------------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH---HHhccHHHHH
Q ss_pred HHHhCCC---CcchHHHHHHHHHHHHhhChHHHHHHHHH-hhHhhccc
Q 002912 566 FVANGNR---YNLLNSAVLELFEYIRKENLKSLVKYIVD-SFWNQLVN 609 (867)
Q Consensus 566 f~~ng~R---~NLlnSA~LElfefIr~eNik~Li~hlve-~y~~~l~~ 609 (867)
....-.. .+=.-+|.+.|+|+.-+.=+.+.+..|++ ++...+.+
T Consensus 439 ~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 439 LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.28 E-value=1.6e+02 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHH
Q 002912 359 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 428 (867)
Q Consensus 359 f~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 428 (867)
++.+..++.++++.+|..++.-|..+ .+...+..|++.+-.+.+..++....++|
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i---------------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRI---------------GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---------------HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh---------------CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 56666777888888887776665543 01224456666666666777776665554
No 67
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=1.4e+03 Score=30.67 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccchh
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDE 547 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDe 547 (867)
++.-|-..+.++....+-+||+|+|.+|..-.+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 334444557778888999999999998755443
No 68
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=30.71 E-value=7e+02 Score=29.33 Aligned_cols=219 Identities=20% Similarity=0.237 Sum_probs=108.9
Q ss_pred cCCCCCC---ccchhHhhhhcCCceeeeecCChHHHHHHHhhheee-ee----e----ehhcc-cccchhhHHhHHHHHH
Q 002912 224 YDPDVPH---VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVG-YL----K----DVVLA-RVLDEATVANLNSIIH 290 (867)
Q Consensus 224 YDPe~p~---~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLq-YL----K----DVVLp-RiLDD~t~s~LnSlIf 290 (867)
-|+..|- .++.-+||.+.+.|.++= ....++.-|-.|+|.. =+ + ++||| -...|---...|--++
T Consensus 125 ad~~i~~~~~s~~qfe~ls~lv~~~q~e--~r~sl~~~ilst~~al~~lD~~iid~ll~svL~~k~v~~~~td~~~~~~~ 202 (411)
T KOG4035|consen 125 ADGFIPLYVISANQFEWLSQLVAYYQME--QRDSLRELILSTFRALCSLDEPIIDILLDSVLPIKLVEDMQTDKSNGQQI 202 (411)
T ss_pred cCCcchhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcccchHHHHHHHhhccchhhhHHHhhhhccHHHH
Confidence 5666553 357778888877777653 2357888888888822 11 2 22222 0111111001111112
Q ss_pred HhHHHHHHHhhCC-------------HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChH----hHHHHHHHH
Q 002912 291 GNNAYVVSLLKDD-------------STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV----QQLRLFRDL 353 (867)
Q Consensus 291 fNqveIV~~Lq~d-------------~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~----~R~~lf~~L 353 (867)
.--..++.+++.+ ..|.+.||.+..+.. ....+-.|.++++.+..+ ....+++-+
T Consensus 203 ~~~~~~l~~l~s~~e~~p~~~md~lgs~~~~~l~~i~e~~~--------~~~L~el~~~f~~~~n~q~~~a~~nvi~~~l 274 (411)
T KOG4035|consen 203 KYLKILLLMLFSDDEAFPLEHMDSLGSEFARFLFNIAEDFH--------KEDLLELCTNFSLATNQQQGSAPLNVIQKIL 274 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcCCHHHHHHHHHcCccc--------HHHHHHHHHHHHHHHhhhcccccHHHHHHHh
Confidence 1122233333332 246667777665532 233455666777644222 223355555
Q ss_pred HhcCcHHHHHHH----H-cCCCcchhhhhhHHHHHHHh--cChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhhHHHHH
Q 002912 354 MNEGIFDIVTDA----L-QSQDKKLVLTGTDILILFLN--QDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFL 425 (867)
Q Consensus 354 v~~GLf~vi~~~----L-~~~d~~ir~~atDILi~iie--hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~ 425 (867)
.++---.+.... | +.+|+ +|..-..||-.+++ -+|+.. ...+...=..|++++|+.+.. +.+.-+..-..
T Consensus 275 ~n~~~~kiFtE~Lll~LNR~~DP-lril~hkvl~lild~fg~pat~-~mFYtNDlkVLIDIliRel~ni~~gd~lr~~~l 352 (411)
T KOG4035|consen 275 ENPYSCKIFTEKLLLKLNREDDP-LRILKHKVLYLILDPFGEPATA-KMFYTNDLKVLIDILIRELINIDEGDKLRAIYL 352 (411)
T ss_pred cCCchHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHhhcCCcchH-hHhhhccHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443332222222 2 24455 88888887776663 334432 223333324677888887765 33344555666
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHH
Q 002912 426 EILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVIT 462 (867)
Q Consensus 426 eaLk~LLDp~~m~~~e~d~FL~~FY~~-~~~~L~~pL~ 462 (867)
..++.|+-... ....+|.+ .+.+++..+.
T Consensus 353 ~ll~~llknt~--------~~k~~hrk~dl~kil~~i~ 382 (411)
T KOG4035|consen 353 FLLKFLLKNTL--------YKKHRHRKHDLNKILNRIS 382 (411)
T ss_pred HHHHHHHhccc--------hhhhcCCchhHHHHHHHHh
Confidence 77777763322 33445544 3555555554
No 69
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=30.36 E-value=7.7e+02 Score=27.16 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=66.7
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH-HHhcChHHHHHHHHh
Q 002912 320 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL-FLNQDPNLLRSYVVR 398 (867)
Q Consensus 320 ~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~-iiehdP~lvR~~i~~ 398 (867)
+..-|..++.-|=-||-+.|.+-.+. +.++-.++..++..++..|.-++.- ++-|.+..+......
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44788899999998998887553222 1223333445678888888777765 445776665543221
Q ss_pred ---cCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCC
Q 002912 399 ---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 435 (867)
Q Consensus 399 ---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 435 (867)
.....++.++.+.+-.+ ++.++....|.+-.||=..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence 11246777777776665 8889999999887776443
No 70
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.28 E-value=2.4e+02 Score=30.96 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=50.6
Q ss_pred hcCchhhhhHhhchHHHHHHHHhhc-----------cchhhHHHHHHHHHHHhccch-----------hHHHHHH----H
Q 002912 501 HHPYRIKCNFLLNNVVDKVLLLTRR-----------REKYLVVAAVRFVRTILSRHD-----------EHLINHF----V 554 (867)
Q Consensus 501 ~H~yriK~~il~~nll~rVl~Ll~~-----------~~K~L~LaAlRF~R~iI~lkD-----------efy~ryi----I 554 (867)
+|-+..|.-|+..+++.-|+.++.. .+..+.=-.|=|+|+++...| ...+.-+ -
T Consensus 96 ~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 96 KYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 4445668889998888777765521 122333345789999988833 2222222 2
Q ss_pred hhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 002912 555 KNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE 590 (867)
Q Consensus 555 k~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~e 590 (867)
+.++++-++.+.-.- +.+-.+..+||+|.+|-++
T Consensus 176 ~~~v~~lLL~l~s~~--~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 176 ESGVLDLLLTLASSP--QESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HcCHHHHHHHHHhCc--cccchhhHHHHHHHHHHcC
Confidence 556666666544332 1122444777777776553
No 71
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.24 E-value=82 Score=23.29 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.6
Q ss_pred hhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 507 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 507 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
+..+...+.+..++.|+.+.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 556777888999999999888899999999998864
No 72
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=29.88 E-value=5.1e+02 Score=26.23 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCC
Q 002912 360 DIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 438 (867)
Q Consensus 360 ~vi~~~L~~~d~~ir~~atDILi~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 438 (867)
.-|.-.|++.+..-|-.|+-++..+++++ +..+.++ ....+..|+..+=....+.++.-...+|..|++--.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~-- 100 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR-- 100 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34667788999999999999999999998 6665222 345667777666555556666666666666664211
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhh
Q 002912 439 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 509 (867)
Q Consensus 439 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 509 (867)
.+.++-.-+--..++.++.+++..... .......++.|.=|+.+|+--+|.|
T Consensus 101 --~~p~l~Rei~tp~l~~~i~~ll~l~~~-----------------~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 101 --GKPTLTREIATPNLPKFIQSLLQLLQD-----------------SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred --CCCchHHHHhhccHHHHHHHHHHHHhc-----------------cccHHHHHHHHHHHHHHCCccccch
Confidence 111122222233466777777653210 2334577899999999999877655
No 73
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.25 E-value=2.2e+02 Score=32.76 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=63.1
Q ss_pred HhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002912 283 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 362 (867)
Q Consensus 283 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi 362 (867)
.+|.+ ++-||..+...+-+.. ||+.|+.++.... +...|..+ |.-+|++-+|-++-.. .|+ .-.| +.++
T Consensus 146 ~Vigt-~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~-~~~~r~ka---L~AissLIRn~~~g~~-~fl---~~~G-~~~L 214 (342)
T KOG2160|consen 146 RVIGT-AVQNNPKSQEQVIELG-ALSKLLKILSSDD-PNTVRTKA---LFAISSLIRNNKPGQD-EFL---KLNG-YQVL 214 (342)
T ss_pred HHHHH-HHhcCHHHHHHHHHcc-cHHHHHHHHccCC-CchHHHHH---HHHHHHHHhcCcHHHH-HHH---hcCC-HHHH
Confidence 34444 4556666666655533 9999999998433 33343333 3567777777766432 332 3356 8999
Q ss_pred HHHHcC--CCcchhhhhhHHHHHHHhcChH
Q 002912 363 TDALQS--QDKKLVLTGTDILILFLNQDPN 390 (867)
Q Consensus 363 ~~~L~~--~d~~ir~~atDILi~iiehdP~ 390 (867)
..+|++ .+...+..++-.+..++.-+++
T Consensus 215 ~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 215 RDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999998 5556667788888777776665
No 74
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.12 E-value=7.2e+02 Score=28.04 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=41.6
Q ss_pred ccHHhHHHHHHHHHHHHHhh-h-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 319 TLEESKKNLVHFLHEFCGLS-K-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 319 ~~~e~rrdlV~FL~E~c~ls-K-~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
.-++-|.....||+.++..+ . -++.+ ...|+ -+++.|.|+++|++..|...|.++|..+++
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 34678888888888887754 1 11111 11222 246788999999999999999888876655
No 75
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.77 E-value=4.3e+02 Score=25.73 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHH
Q 002912 331 LHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVK 410 (867)
Q Consensus 331 L~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~ 410 (867)
+-|+|.+..+-....|... .+|..-|++.++.+...|..+|=+|+.+-...++..+...+ +++.|++
T Consensus 21 il~icd~I~~~~~~~k~a~----------raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~---fl~~l~~ 87 (133)
T cd03561 21 NLELCDLINLKPNGPKEAA----------RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE---FLLELVK 87 (133)
T ss_pred HHHHHHHHhCCCCCHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH---HHHHHHH
Q ss_pred HHhc--cCChhhHHHHHHHHHHh
Q 002912 411 GMIT--DFGEDMHCQFLEILRSL 431 (867)
Q Consensus 411 ~ll~--d~d~glk~Ql~eaLk~L 431 (867)
.+-. ..++-++..+.+.+..+
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHH
No 76
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=28.75 E-value=24 Score=38.16 Aligned_cols=59 Identities=20% Similarity=0.481 Sum_probs=34.4
Q ss_pred hHHHHHH------HhhCcHHHHHHHHHHhC------CCCcchHHHHHHHHHHHHhhCh----------HHHHHHHHHhhH
Q 002912 547 EHLINHF------VKNNLLKPIVDAFVANG------NRYNLLNSAVLELFEYIRKENL----------KSLVKYIVDSFW 604 (867)
Q Consensus 547 efy~ryi------Ik~nLf~PIl~~f~~ng------~R~NLlnSA~LElfefIr~eNi----------k~Li~hlve~y~ 604 (867)
||.+|.+ +..|+|.| +-| ++| +.||= +++.+++.+|||.-|| .+|+.-|| |-
T Consensus 170 Efi~~ll~ii~rf~~~n~fp~--kn~-~~gpnv~~~P~y~~-ypT~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLv--yD 243 (301)
T COG5111 170 EFIARLLEIIERFLEKNLFPR--KNF-EEGPNVFYAPKYED-YPTLEDIMNYVRNVNILSVPLRLDNLESLADVLV--YD 243 (301)
T ss_pred HHHHHHHHHHHHHHHhccCCc--cch-hcCCccccCCccCC-CccHHHHHHHHHhceeeeccccHHHHHHHhHhee--ec
Confidence 6666532 46667766 222 233 33432 5789999999998654 45554444 55
Q ss_pred hhccccc
Q 002912 605 NQLVNFE 611 (867)
Q Consensus 605 ~~l~~i~ 611 (867)
.+++++.
T Consensus 244 gKvEK~~ 250 (301)
T COG5111 244 GKVEKLH 250 (301)
T ss_pred Ceeeeec
Confidence 5555543
No 77
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=28.42 E-value=2.6e+02 Score=29.33 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcC-----Cc--------------chHHHHHHHHhccCChhh
Q 002912 360 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE-----GI--------------PLLGLLVKGMITDFGEDM 420 (867)
Q Consensus 360 ~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe-----~~--------------~Ll~~Li~~ll~d~d~gl 420 (867)
..+.-++.|++.++|.+|+..|..+++.. +.|+...+ .. .+-..|+..|..|.+..+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGS----KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 45667788999999999999999999986 44444321 10 122345666778899999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 002912 421 HCQFLEILRSLLDSYTL 437 (867)
Q Consensus 421 k~Ql~eaLk~LLDp~~m 437 (867)
..|+..+|..|+.....
T Consensus 119 l~q~lK~la~Lv~~tPY 135 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999976554
No 78
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.20 E-value=5.3e+02 Score=25.81 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh--hhHHHHHH
Q 002912 349 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE--DMHCQFLE 426 (867)
Q Consensus 349 lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~--glk~Ql~e 426 (867)
.|..+++..+.+.+-..+.+.+..+-..+.-|+..++.+ .|.++..| =..++..++..++..... --|.-++|
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~e-le~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLE-LEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 444455555555555555445555555566666655522 34433322 233444555444432221 22334455
Q ss_pred HHHHhc
Q 002912 427 ILRSLL 432 (867)
Q Consensus 427 aLk~LL 432 (867)
+++.+.
T Consensus 140 ~l~~l~ 145 (168)
T PF12783_consen 140 ILRELC 145 (168)
T ss_pred HHHHHH
Confidence 555554
No 79
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.09 E-value=78 Score=37.12 Aligned_cols=93 Identities=17% Similarity=0.296 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCceeccceEEEEEeeCCCcceeEEEEecCCCc-ceEEeecCCCcccccccC--eEEEecCCCcc---cc
Q 002912 13 PMQVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNE-TILLHRISPDDIYRKQED--TIISWRDPEYS---TE 86 (867)
Q Consensus 13 ~VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~-~LL~s~I~~~d~YqkQqe--TLIvWte~~~g---~D 86 (867)
++||+--.+ .+..|+|+|-.....+.+ +...|+||.--+-. .||..=+.++-.-+||.- -+||-.-+... .-
T Consensus 387 kckvfykKd-KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~e~t~p~T 464 (487)
T KOG2724|consen 387 KCKVFYKKD-KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPSESTEPAT 464 (487)
T ss_pred ccceEEEec-ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCccccccee
Confidence 455666653 577788888776665565 66889999887644 455566677777888874 58888765433 35
Q ss_pred ccccccCccchhHHHHHHHHH
Q 002912 87 LALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 87 lALSFQE~~GC~~IWe~I~~V 107 (867)
|-|.|-..+|.+++-+.|.++
T Consensus 465 mLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 465 MLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred EEEEecccchHHHHHHHHHhh
Confidence 678899999999999999876
No 80
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=27.76 E-value=1.5e+02 Score=33.18 Aligned_cols=50 Identities=12% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCC
Q 002912 167 FFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPD 227 (867)
Q Consensus 167 Yi~kLl~LF~~cEdlen~~~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VvG~LEYDPe 227 (867)
...+|-.|.+.|.+-..-+....+-.+||.++.. ++-. -.++.|||+||+
T Consensus 192 lsEnLekLl~ea~erS~~~~~~~~~~lvrklL~I---------isRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 192 LSENLEKLLQEAHERSESEEVAFVTQLVRKLLII---------ISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------HSS---------------
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH---------hcch--hhhhhhhccChH
Confidence 4567777888888887788899999999988742 1111 146679999998
No 81
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=27.45 E-value=33 Score=35.66 Aligned_cols=40 Identities=13% Similarity=0.498 Sum_probs=30.7
Q ss_pred CeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecC
Q 002912 13 PMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEE 52 (867)
Q Consensus 13 ~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~ 52 (867)
|.|+|+... -..|..||||-|.......+..+.|+++-..
T Consensus 96 RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDk 136 (211)
T COG5171 96 RAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDK 136 (211)
T ss_pred hhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeech
Confidence 568999864 4689999999998876666667788886544
No 82
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=26.40 E-value=58 Score=38.81 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=64.4
Q ss_pred CeEEEEe-CCCCCceeccc-eEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccccccc
Q 002912 13 PMQVYRL-NDDGKWDDQGT-GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 90 (867)
Q Consensus 13 ~VKVY~L-~~~~~W~D~GT-G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALS 90 (867)
=||+|.- .+-+.|.-+|+ |-+...+.--.+..+|-..+-.+++.|-+..+-.+=.|++-+ |..-=-|.+ -+-.+|+
T Consensus 44 VVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r-~ffhtFegd-dc~aGLn 121 (569)
T KOG3671|consen 44 VVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPR-TFFHTFEGD-DCQAGLN 121 (569)
T ss_pred HHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecCceeeehHHhhhhceeccCc-cceeeeccc-cceeeec
Confidence 3678884 34459999999 988766543345566777777788877888888888887755 544444555 3578999
Q ss_pred ccCccchhHHHHHH
Q 002912 91 FQEPTGCSYIWDNI 104 (867)
Q Consensus 91 FQE~~GC~~IWe~I 104 (867)
|=+-+-|+.+.+.+
T Consensus 122 F~~E~EA~~F~k~V 135 (569)
T KOG3671|consen 122 FASEEEAQKFRKKV 135 (569)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999888765544
No 83
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=26.09 E-value=2.1e+02 Score=29.61 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=52.1
Q ss_pred HhhhcccCCCCCCc-cchh-HhhhhcCCceeeeecC---ChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHh
Q 002912 218 IIGSLEYDPDVPHV-QHHR-NFLKEHVVFKEAIPIR---DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGN 292 (867)
Q Consensus 218 VvG~LEYDPe~p~~-~nHR-~fL~~~a~FKEVVPI~---d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffN 292 (867)
.-|||+.||.|-.. ..-| .++ ..+|+ +|-. =..+..-+...+-+-|..|. .++.+|++++.-+.+.+...
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l--P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~ 77 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL--PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQ 77 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC--ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHH
Confidence 45999999987753 1122 122 12222 1111 12334445556667787775 57889999998887755443
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhC
Q 002912 293 NAYVVSLLKDDSTFIQELFARLR 315 (867)
Q Consensus 293 qveIV~~Lq~d~~FL~eLF~~l~ 315 (867)
--.|-+-=-.++-||+|||..+.
T Consensus 78 lkrl~~s~~kg~~ll~EL~~~r~ 100 (160)
T PF15005_consen 78 LKRLTDSDLKGEPLLKELVWMRQ 100 (160)
T ss_pred HHHHhcCCcccchHHHHHHHHHH
Confidence 33333322234567777777654
No 84
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.07 E-value=5e+02 Score=25.43 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcC
Q 002912 281 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEG 357 (867)
Q Consensus 281 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~L-Q~~~R~~lf~~Lv~~G 357 (867)
++.+|.+++-.--..+-..+.+ ..|+.+|...+.++...+.-|..++.++++--.--++- +.+.-...|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
No 85
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=24.98 E-value=50 Score=34.44 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=57.0
Q ss_pred HHHHHHhhcChh---hHHHH---HHHHhcchHHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q 002912 141 LILKTVTESGIA---DQMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 194 (867)
Q Consensus 141 eIl~~i~~~s~~---~rerl---a~~Il~~~~Yi~kLl~LF~~cEd--------------------len~~~Lh~L~~Iv 194 (867)
+|.+++..++.. .|-++ .+-++.++=.++.|+.-.+..|- -.+.....-+-...
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 566666544322 34444 22344566666667665444332 22344556678889
Q ss_pred HHHHhcCCh--hhHhhhhcchhHhHHhhhcccC
Q 002912 195 KGIILLNSP--QIFEKIFGDELMMDIIGSLEYD 225 (867)
Q Consensus 195 K~IilLNd~--~I~E~llsDe~i~~VvG~LEYD 225 (867)
|++++||.. .|+|+..+.+....-+.||||=
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 999999976 6899999999999999999994
No 86
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.80 E-value=3.2e+02 Score=25.71 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH-HHHHHHh
Q 002912 359 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNL-LRSYVVR 398 (867)
Q Consensus 359 f~vi~~~L~~~d~~ir~~atDILi~iiehdP~l-vR~~i~~ 398 (867)
+--|.-||.|=.+.||..++.+|-.++++.|.. ++++-.+
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 345677888999999999999999999999998 6665444
No 87
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=24.75 E-value=1.6e+02 Score=35.66 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcCcHHHHHHH---HcCC---CcchhhhhhHHHHHHHhcChHHHHHHH
Q 002912 324 KKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEGIFDIVTDA---LQSQ---DKKLVLTGTDILILFLNQDPNLLRSYV 396 (867)
Q Consensus 324 rrdlV~FL~E~c~lsK~L-Q~~~R~~lf~~Lv~~GLf~vi~~~---L~~~---d~~ir~~atDILi~iiehdP~lvR~~i 396 (867)
..+++.+|.+.|.-+..- ....+..+.++|-+.|+-.++... +... ...+|.+|..-|-.+..+.|..+|..+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 445677777777755444 335677788999999954444444 4444 456888998888888999999999876
Q ss_pred Hh
Q 002912 397 VR 398 (867)
Q Consensus 397 ~~ 398 (867)
++
T Consensus 564 ~~ 565 (618)
T PF01347_consen 564 LP 565 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=1.4e+03 Score=28.30 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=77.6
Q ss_pred HhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCC----Cc------cHHhHHHHHHHHHHHHHhhhccChHhHHHHHH-
Q 002912 283 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSP----TT------LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFR- 351 (867)
Q Consensus 283 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~----~~------~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~- 351 (867)
..++--+.+|..|+..-+..+..|+..-=..+... .+ +...---.+.||+ +|+++. .+.+
T Consensus 355 lll~~~ll~n~~e~~~~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~Lk---S~SrSV------~~LRT 425 (743)
T COG5369 355 LLLTPELLFNMYELTAGLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLK---SMSRSV------TFLRT 425 (743)
T ss_pred hhcCHHHHHhHHHHhhhhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHH---HhhHHH------HHHHh
Confidence 35777889999999998888877765322222111 11 1111112334443 233322 2333
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhh-hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 002912 352 DLMNEGIFDIVTDALQSQDKKLVLTG-TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 430 (867)
Q Consensus 352 ~Lv~~GLf~vi~~~L~~~d~~ir~~a-tDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 430 (867)
.|.+..+-..+-.+|.+++-.|...+ .+|.--++...| +|+.+++ ..++++|+..+. .+|..|+.--.=.||-
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~---~~iIdvl~~~v~-sKDdaLqans~wvlrH 499 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLE---KSIIDVLVNLVM-SKDDALQANSEWVLRH 499 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHH---hhHHHHHHHHhh-cchhhhhhcchhhhhh
Confidence 36666777778888888665555433 366666777665 3665555 347788877554 5677777555556665
Q ss_pred hc
Q 002912 431 LL 432 (867)
Q Consensus 431 LL 432 (867)
|+
T Consensus 500 lm 501 (743)
T COG5369 500 LM 501 (743)
T ss_pred hh
Confidence 53
No 89
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.28 E-value=1e+03 Score=30.92 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=50.7
Q ss_pred hcCcHHHHHHHHcCC-CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 355 NEGIFDIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 355 ~~GLf~vi~~~L~~~-d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
-.-+.++|--.|+|+ +..|...|+=-|.++.|.-|..+- +++... -+-+|+.-|++=.-..+..|..+||+.|=
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a-~vV~~~---aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA-IVVDEH---AIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh-eeeccc---chHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 344667888888876 467778888888999998887542 333321 23345555555556678999999999884
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=24.12 E-value=5.3e+02 Score=31.15 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=61.8
Q ss_pred HHHHHhhCC-----HH----HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002912 295 YVVSLLKDD-----ST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 365 (867)
Q Consensus 295 eIV~~Lq~d-----~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~ 365 (867)
+|..+++++ +. .|-.+|..+.+.. +.-.|+.+++.|+++|.- | ..-+..=.+.-+-++|+-+
T Consensus 310 el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~----Q----~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 310 ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTN----Q----PARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHh----c----hHhhhchHHHHHHHHHHHH
Confidence 577788876 32 3455667776533 345788899999999963 1 1223333455567777777
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChH
Q 002912 366 LQSQDKKLVLTGTDILILFLNQDPN 390 (867)
Q Consensus 366 L~~~d~~ir~~atDILi~iiehdP~ 390 (867)
-...|..++.++-|-+..+--|+|.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch
Confidence 7788888999999999999999996
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=23.89 E-value=2.4e+02 Score=35.46 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=58.5
Q ss_pred hhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002912 507 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 586 (867)
Q Consensus 507 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 586 (867)
|.-+...+++.++++|+.+++.-++-.|+|.+-++= -|.-.-..|++.|++.+++.++... |.- ..|+-++..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~----~~~-~val~iLy~ 396 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP----NFR-EVALKILYN 396 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC----chH-HHHHHHHHH
Confidence 667788899999999999999999999999998853 3344578999999999999888532 222 346777766
Q ss_pred HH
Q 002912 587 IR 588 (867)
Q Consensus 587 Ir 588 (867)
|.
T Consensus 397 LS 398 (708)
T PF05804_consen 397 LS 398 (708)
T ss_pred hc
Confidence 63
No 92
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.79 E-value=42 Score=33.63 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.6
Q ss_pred EEecCCCccccccccccCccc
Q 002912 76 ISWRDPEYSTELALSFQEPTG 96 (867)
Q Consensus 76 IvWte~~~g~DlALSFQE~~G 96 (867)
++|+||. |+|.||.|.-.++
T Consensus 66 vsWtEPT-GTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPT-GTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCC-CceEEEEeccccc
Confidence 6899997 9999999977665
No 93
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=1.3e+03 Score=27.36 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=113.6
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 002912 351 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 430 (867)
Q Consensus 351 ~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 430 (867)
+.|+..|=++++-.+++..|..++--+|--+..| -.|-. -|. ++-|.+..|+..|+++| .+.++-+|.|..-||+.
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~-~Rk-~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRR-ARK-ILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHH-HHH-HHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 4578899999999999999988876655443322 22221 243 34455667888888876 56788899999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh--
Q 002912 431 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-- 508 (867)
Q Consensus 431 LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~-- 508 (867)
|---+.. .+..--...++-|+.-|.+.. -+-++ + =-||+++-+.+--+
T Consensus 278 lasdt~Y-------q~eiv~ag~lP~lv~Llqs~~------------------~plil----a-sVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 278 LASDTEY-------QREIVEAGSLPLLVELLQSPM------------------GPLIL----A-SVACIRNISIHPLNEV 327 (550)
T ss_pred hcccchh-------hhHHHhcCCchHHHHHHhCcc------------------hhHHH----H-HHHHHhhcccccCccc
Confidence 8422211 111122234555555553210 01111 1 13788775554322
Q ss_pred hHhhchHHHHHHHHhhccchh-hHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHH
Q 002912 509 NFLLNNVVDKVLLLTRRREKY-LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 567 (867)
Q Consensus 509 ~il~~nll~rVl~Ll~~~~K~-L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~ 567 (867)
.|.....++-.++|+++++.- .++.|+--+|..-+.- +.-.+-|+..+-..-...+++
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHh
Confidence 344455677788999999865 8999999999976532 334556677777766666554
No 94
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=23.19 E-value=3.9e+02 Score=29.72 Aligned_cols=79 Identities=16% Similarity=0.393 Sum_probs=57.0
Q ss_pred HHHHHHHHHH--HHhhcCchhhhhHhhchHHHHHHHHhh-----ccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHH
Q 002912 488 LSNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLK 560 (867)
Q Consensus 488 l~~l~ELL~F--cv~~H~yriK~~il~~nll~rVl~Ll~-----~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~ 560 (867)
-..+|-.|.- ||-.|+- .|..|++-+++-..--.++ +..-+|+|++|-.+.++|..+|.-...|+....++.
T Consensus 64 snRVcnaLaLlQ~vAshpe-tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 64 SNRVCNALALLQCVASHPE-TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHHH-TT-THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHHHcChH-HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 3455555543 6777765 5668888888755544332 224699999999999999999999999999999998
Q ss_pred HHHHHHH
Q 002912 561 PIVDAFV 567 (867)
Q Consensus 561 PIl~~f~ 567 (867)
.-+..+.
T Consensus 143 lcLr~me 149 (262)
T PF04078_consen 143 LCLRIME 149 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887773
No 95
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.12 E-value=4.9e+02 Score=28.88 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhhHhhch-----HHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCc
Q 002912 484 KPEILSNICELLCFCVLHHPYRIKCNFLLNN-----VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL 558 (867)
Q Consensus 484 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n-----ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nL 558 (867)
+.++..+++=++.=++..++.|.+.|.-... ...-.++++.+.+.+.++.|.+++=.+++-.+..-.... ..+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHH
Confidence 3455666666666678888888876655222 456667788899999999999999999988776554433 555
Q ss_pred HHHHHHHHHHhC--CCCcchHHHHHHHHHHHHh
Q 002912 559 LKPIVDAFVANG--NRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 559 f~PIl~~f~~ng--~R~NLlnSA~LElfefIr~ 589 (867)
+.++++.+.... +..|+...|+.-|-+..|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 677777776422 2234445555444444443
No 96
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=23.08 E-value=2e+02 Score=24.05 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHH----HhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002912 295 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC----GLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 366 (867)
Q Consensus 295 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c----~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L 366 (867)
++.++++++.+|++-||+.=.++. =+..+...+++.. .....-.. .+...+.+++-.|++.+|..=|
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~~~~----f~~~l~~~~~~~~~~~~~~~~~~~~-~~~~y~~~f~~sg~igvi~~Wl 76 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNGDPN----FQERLKELIKEWITEYINENSPDND-DPEEYLISFIVSGIIGVIQWWL 76 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777766666665322222 2222333333332 11111111 1122778889999999887543
No 97
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=23.02 E-value=5.7e+02 Score=25.12 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=48.8
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHH--hHHHHHHHHHHHHHhhhccChH-hHHHHHHHHHhcC
Q 002912 281 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQMV-QQLRLFRDLMNEG 357 (867)
Q Consensus 281 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e--~rrdlV~FL~E~c~lsK~LQ~~-~R~~lf~~Lv~~G 357 (867)
++.+|.+++-.-...+-..+. +..|+.+|...+.++..... -|..++.+|++.-.-.++.... .=..+|+.|-+.|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 345566555543444444444 46799999998887776654 6778888888765544443322 2356888887776
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.72 E-value=1.7e+02 Score=22.33 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.4
Q ss_pred hhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 507 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 507 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
|..++..+.+...+.|+++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999988763
No 99
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.49 E-value=2.8e+02 Score=27.28 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 484 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 484 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
.+..+.-.|-=|..+|++|+. .|..+-.-+.=.+|..||...+.=++=-||.++-.++.
T Consensus 57 d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445667788888999999976 57777566677899999999999999999999888775
No 100
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.17 E-value=8e+02 Score=24.54 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++..+..++....+. ...+-++|.+-++=....|.. +.+|..-|++.++.+...|..+|-+|+.
T Consensus 2 ~~~~iekAT~~~l~~~d----w~~ileicD~In~~~~~~k~a----------~rai~krl~~~n~~v~l~AL~LLe~~vk 67 (139)
T cd03567 2 LEAWLNKATNPSNREED----WEAIQAFCEQINKEPEGPQLA----------VRLLAHKIQSPQEKEALQALTVLEACMK 67 (139)
T ss_pred HHHHHHHHcCccCCCCC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34556666665543322 334557777765432233433 3556677889999998999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 432 (867)
.--..++..+.+ ..+++.|++++-. ..+..++..+.+.+..+=
T Consensus 68 NCG~~fh~evas---~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 68 NCGERFHSEVGK---FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HcCHHHHHHHHh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 887777766654 3477788886632 245677777777666653
No 101
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.09 E-value=2.8e+02 Score=27.74 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHH
Q 002912 488 LSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 567 (867)
Q Consensus 488 l~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~ 567 (867)
+..|+++|..+....... ..+..+...+|||||+++..... ....+-..+.+..|...+
T Consensus 109 ~~~L~~~L~~~~~~~~~~-------------------~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L- 167 (187)
T PF06371_consen 109 LEALLNVLSKLNKKKEKS-------------------EEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSL- 167 (187)
T ss_dssp HHHHHHHHHHHHTHHCTC-------------------TTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--
T ss_pred HHHHHHHHHHhhhhhhhc-------------------chhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHH-
Q ss_pred HhCCCCcchHHHHHHHHHHH
Q 002912 568 ANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 568 ~ng~R~NLlnSA~LElfefI 587 (867)
.+.+=-+--.++|++-+|
T Consensus 168 --~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 168 --DSPNIKTRKLALEILAAL 185 (187)
T ss_dssp ---TTSHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH
No 102
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=21.60 E-value=1e+03 Score=29.14 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 002912 695 RSGGLVDYDDDEDDEDYRPPP 715 (867)
Q Consensus 695 ~~~~LVdY~ddedd~d~~~~~ 715 (867)
.++.||=++-||||||.+|.|
T Consensus 461 ~~ddl~Lfdlddd~dd~~~~p 481 (717)
T PF05505_consen 461 APDDLVLFDLDDDDDDNKPVP 481 (717)
T ss_pred CCCCeeeeccccCCcccccCc
Confidence 446788888888888888888
No 103
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.15 E-value=1.5e+02 Score=29.25 Aligned_cols=52 Identities=6% Similarity=0.238 Sum_probs=41.7
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHH
Q 002912 514 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 514 nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ 568 (867)
.++..+.+=|+.+..|+++-|||+++.|+....+-|.+.+.+|- +++..+..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~ 89 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECAN 89 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHH
Confidence 45666666667788999999999999999999999999999883 56655543
Done!