Query 002912
Match_columns 867
No_of_seqs 202 out of 265
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 98.7 3.7E-08 1.3E-12 94.8 9.1 98 12-109 27-133 (134)
2 4hxt_A De novo protein OR329; 97.9 0.0029 9.9E-08 62.8 22.9 218 307-567 4-222 (252)
3 1xke_A RAN-binding protein 2; 97.7 0.00012 4.1E-09 70.0 9.0 100 12-111 13-121 (130)
4 1xqr_A HSPBP1 protein; armadil 97.7 0.009 3.1E-07 64.1 24.5 203 303-544 26-239 (296)
5 3n7c_A ABR034WP; nuclear pore 97.6 0.00015 5E-09 69.6 9.1 100 12-111 16-122 (130)
6 2ec1_A Nucleoporin 50 kDa; ran 97.6 0.00029 9.8E-09 67.1 10.2 97 11-109 17-124 (125)
7 1k5d_B RAN-specific GTPase-act 97.5 0.00029 1E-08 72.1 9.9 100 12-111 51-162 (201)
8 4hat_B RAN-specific GTPase-act 97.4 0.00042 1.4E-08 67.2 8.8 100 11-110 27-136 (140)
9 3m1i_B RAN-specific GTPase-act 97.3 0.00057 2E-08 69.4 9.3 100 11-110 78-187 (191)
10 2jdq_A Importin alpha-1 subuni 97.3 0.022 7.6E-07 61.6 22.5 224 305-568 64-287 (450)
11 2crf_A RAN binding protein 3; 97.3 0.00046 1.6E-08 67.6 8.3 92 12-104 32-132 (150)
12 4db8_A Armadillo-repeat protei 97.3 0.032 1.1E-06 55.8 21.7 221 305-568 12-233 (252)
13 2y8g_A Ranbp3-B, RAN-binding p 97.2 0.00062 2.1E-08 65.8 7.9 91 12-103 20-119 (138)
14 4hxt_A De novo protein OR329; 97.2 0.047 1.6E-06 54.0 21.9 203 305-549 44-247 (252)
15 4b8j_A Importin subunit alpha- 97.2 0.085 2.9E-06 59.2 25.7 222 306-568 118-339 (528)
16 4b8j_A Importin subunit alpha- 97.1 0.25 8.4E-06 55.4 29.0 237 305-587 160-399 (528)
17 1wa5_B Importin alpha subunit; 97.1 0.074 2.5E-06 59.9 24.4 237 305-587 215-455 (530)
18 3tpo_A Importin subunit alpha- 96.9 0.35 1.2E-05 54.9 27.5 242 306-589 205-449 (529)
19 1wa5_B Importin alpha subunit; 96.6 0.31 1.1E-05 54.9 24.6 202 305-547 257-461 (530)
20 3tpo_A Importin subunit alpha- 96.6 0.057 2E-06 61.4 18.7 186 351-567 156-345 (529)
21 3ul1_B Importin subunit alpha- 96.6 0.27 9.3E-06 55.7 24.1 242 306-589 186-430 (510)
22 2jdq_A Importin alpha-1 subuni 96.6 0.34 1.2E-05 52.2 23.9 202 305-547 192-394 (450)
23 4db6_A Armadillo repeat protei 96.6 0.31 1.1E-05 47.3 21.3 194 307-542 14-208 (210)
24 4db8_A Armadillo-repeat protei 96.5 0.32 1.1E-05 48.5 21.6 196 305-542 54-250 (252)
25 1qc6_A EVH1 domain from ENA/VA 96.5 0.0093 3.2E-07 56.9 9.2 99 11-111 8-112 (130)
26 4db6_A Armadillo repeat protei 96.4 0.3 1E-05 47.4 20.1 183 352-567 7-190 (210)
27 3ul1_B Importin subunit alpha- 96.1 0.082 2.8E-06 59.9 16.0 185 351-566 137-325 (510)
28 1evh_A WH1 domain, protein (ME 95.9 0.032 1.1E-06 52.0 9.4 95 11-107 8-107 (112)
29 1jdh_A Beta-catenin; beta-cate 95.9 2.3 8E-05 46.8 26.1 234 305-583 101-334 (529)
30 1ddw_A GLGF-domain protein hom 95.8 0.026 8.8E-07 53.4 8.6 99 11-111 8-110 (120)
31 1egx_A VAsp, vasodilator-stimu 95.7 0.036 1.2E-06 51.9 9.1 97 10-108 7-110 (115)
32 2z6h_A Catenin beta-1, beta-ca 95.6 0.99 3.4E-05 52.3 22.4 237 306-586 225-484 (644)
33 4fdd_A Transportin-1; heat rep 95.5 2.2 7.5E-05 50.9 25.8 219 303-550 126-395 (852)
34 2z6h_A Catenin beta-1, beta-ca 95.3 3 0.0001 48.3 25.4 236 305-585 98-333 (644)
35 4fdd_A Transportin-1; heat rep 95.2 3 0.0001 49.7 25.4 209 299-544 39-286 (852)
36 1i2h_A PSD-ZIP45(homer-1C/VESL 94.8 0.12 4E-06 51.6 9.7 99 10-110 12-114 (168)
37 1jdh_A Beta-catenin; beta-cate 94.3 1.4 4.9E-05 48.5 18.3 184 353-569 13-197 (529)
38 2jp2_A Spred-2, sprouty-relate 93.9 0.25 8.6E-06 47.0 9.6 95 11-107 17-120 (126)
39 1ibr_B P95, importin beta-1 su 93.8 4.4 0.00015 43.4 20.5 210 304-544 34-289 (462)
40 4gmo_A Putative uncharacterize 93.6 0.48 1.7E-05 56.1 13.5 191 351-557 29-227 (684)
41 3b2a_A TON_1937, putative unch 93.6 0.86 2.9E-05 48.0 13.6 151 355-545 31-181 (265)
42 2z6g_A B-catenin; FULL-length, 93.5 11 0.00038 45.1 25.2 232 305-581 234-465 (780)
43 2z6g_A B-catenin; FULL-length, 93.5 5.2 0.00018 47.9 22.3 212 307-568 117-329 (780)
44 1ibr_B P95, importin beta-1 su 93.0 2.9 0.0001 44.9 17.6 210 305-544 172-396 (462)
45 1xod_A Spred1; sprouty, EVH1, 92.9 0.37 1.3E-05 45.3 8.8 97 10-108 7-112 (118)
46 3now_A UNC-45 protein, SD10334 92.9 5.5 0.00019 48.5 21.2 235 302-568 418-676 (810)
47 2qk2_A LP04448P; mini spindles 92.8 4.6 0.00016 40.4 17.6 193 310-553 20-216 (242)
48 1qgr_A Protein (importin beta 92.7 10 0.00034 44.5 22.9 230 305-566 172-417 (876)
49 2bpt_A Importin beta-1 subunit 92.2 9.6 0.00033 44.6 21.8 242 304-587 38-293 (861)
50 2ifs_A N-WAsp, wiskott-aldrich 92.2 0.66 2.3E-05 46.3 10.0 96 13-110 64-159 (169)
51 1mke_A WIP - N-WAsp, fusion pr 92.1 0.67 2.3E-05 45.5 9.9 96 13-110 47-142 (152)
52 1w63_A Adapter-related protein 91.9 23 0.00077 41.1 24.5 210 357-590 142-397 (618)
53 1w63_A Adapter-related protein 91.6 14 0.00047 43.0 22.0 175 359-608 315-493 (618)
54 1xqr_A HSPBP1 protein; armadil 91.2 13 0.00046 39.4 19.7 183 373-589 56-238 (296)
55 3now_A UNC-45 protein, SD10334 91.1 7 0.00024 47.6 19.4 200 306-588 581-781 (810)
56 2bpt_A Importin beta-1 subunit 91.0 29 0.00098 40.6 24.6 206 358-587 455-666 (861)
57 1qgr_A Protein (importin beta 90.7 17 0.00059 42.5 21.9 239 304-587 34-286 (876)
58 2vgl_A Adaptor protein complex 90.4 12 0.00041 43.7 20.1 67 358-432 147-215 (621)
59 3nmw_A APC variant protein; AR 90.3 7.6 0.00026 42.3 17.2 211 321-567 98-315 (354)
60 3nmz_A APC variant protein; pr 90.2 7.3 0.00025 44.2 17.4 211 321-567 214-431 (458)
61 3opb_A SWI5-dependent HO expre 89.9 13 0.00045 45.0 20.0 263 298-587 369-727 (778)
62 3grl_A General vesicular trans 88.4 17 0.00059 43.1 19.2 106 486-592 137-244 (651)
63 1xm9_A Plakophilin 1; armadill 86.1 32 0.0011 38.1 19.1 208 307-542 4-219 (457)
64 2qk2_A LP04448P; mini spindles 83.9 33 0.0011 34.1 16.4 162 364-566 22-185 (242)
65 3nmw_A APC variant protein; AR 83.7 18 0.00062 39.3 15.3 226 321-586 46-290 (354)
66 3nmz_A APC variant protein; pr 82.0 20 0.00069 40.6 15.3 205 352-587 184-407 (458)
67 3grl_A General vesicular trans 80.6 70 0.0024 38.0 19.5 232 282-547 143-398 (651)
68 3fga_B Serine/threonine-protei 80.3 4.7 0.00016 45.2 9.1 248 134-435 96-368 (403)
69 3ltm_A Alpha-REP4; protein eng 79.4 41 0.0014 32.3 14.7 78 302-381 16-105 (211)
70 2npp_B PP2A, B subunit, serine 79.0 5.3 0.00018 45.4 9.2 75 164-239 160-248 (449)
71 1xm9_A Plakophilin 1; armadill 77.5 85 0.0029 34.7 18.4 176 359-568 4-196 (457)
72 3l6x_A Catenin delta-1; cateni 76.5 46 0.0016 38.9 16.3 158 405-588 310-476 (584)
73 1u6g_C TIP120 protein, CAND1; 76.1 94 0.0032 38.6 20.0 219 304-569 5-225 (1230)
74 2qk1_A Protein STU2; STU2P, XM 73.0 53 0.0018 33.6 14.2 183 320-542 29-219 (249)
75 2vgl_B AP-2 complex subunit be 70.9 1E+02 0.0035 35.2 17.4 231 307-589 123-364 (591)
76 2vgl_A Adaptor protein complex 69.4 69 0.0024 37.3 15.7 67 361-436 333-401 (621)
77 3syx_A Sprouty-related, EVH1 d 68.4 13 0.00044 35.6 7.5 91 16-109 20-120 (130)
78 1u6g_C TIP120 protein, CAND1; 68.2 36 0.0012 42.3 13.7 199 305-544 86-285 (1230)
79 2lyd_A Decapping protein 1; DC 65.2 25 0.00084 33.7 8.8 95 11-109 35-132 (134)
80 3tt9_A Plakophilin-2; cell adh 57.6 1.4E+02 0.0047 30.7 13.6 114 307-432 10-123 (233)
81 2of3_A ZYG-9; multifunctional 56.8 2E+02 0.0067 30.3 15.2 155 366-547 55-241 (266)
82 2qkl_A DCP1 protein, SPBC3B9.2 54.3 47 0.0016 31.5 8.6 91 11-107 30-124 (127)
83 1wa5_C Importin alpha RE-expor 53.7 3.6E+02 0.012 32.5 21.8 90 296-394 26-127 (960)
84 2vgl_B AP-2 complex subunit be 51.8 3.1E+02 0.011 31.2 18.7 69 307-391 15-83 (591)
85 2qk1_A Protein STU2; STU2P, XM 50.7 43 0.0015 34.3 8.5 76 304-386 145-220 (249)
86 3ltj_A Alpharep-4; protein eng 50.4 1.7E+02 0.0057 27.6 15.0 25 358-382 77-101 (201)
87 2jak_A Serine/threonine-protei 49.1 1.3E+02 0.0043 33.7 12.3 72 295-376 282-357 (392)
88 3a6p_A Exportin-5; exportin-5, 48.0 2.5E+02 0.0084 35.4 16.3 178 302-501 131-332 (1204)
89 2x19_B Importin-13; nuclear tr 45.9 4.5E+02 0.015 31.3 21.6 322 254-607 81-454 (963)
90 3ltm_A Alpha-REP4; protein eng 45.9 2E+02 0.0069 27.3 16.3 91 340-431 30-139 (211)
91 1b3u_A Protein (protein phosph 45.8 3.3E+02 0.011 29.7 21.0 105 306-432 165-270 (588)
92 1oyz_A Hypothetical protein YI 42.7 2.5E+02 0.0087 27.9 12.7 20 358-377 129-148 (280)
93 3m1i_C Exportin-1; heat repeat 40.9 1.1E+02 0.0036 37.7 11.2 65 315-387 812-879 (1049)
94 4ffb_C Protein STU2; tubulin f 40.2 1.6E+02 0.0054 30.0 10.9 192 312-541 16-210 (278)
95 1b3u_A Protein (protein phosph 37.8 4.3E+02 0.015 28.8 20.6 190 321-567 101-291 (588)
96 1upk_A MO25 protein; transfera 35.9 4.7E+02 0.016 28.6 17.7 237 294-569 13-266 (341)
97 3tt9_A Plakophilin-2; cell adh 35.4 3.2E+02 0.011 27.9 12.1 81 504-586 42-122 (233)
98 3l6x_A Catenin delta-1; cateni 35.0 2.8E+02 0.0096 32.3 13.0 111 307-431 50-161 (584)
99 3m1i_C Exportin-1; heat repeat 31.5 7.9E+02 0.027 29.9 23.7 223 302-543 135-373 (1049)
100 3gs3_A Symplekin, LD45768P; he 30.2 3E+02 0.01 28.7 11.1 62 305-381 53-114 (257)
101 2jby_A M11L protein; apoptosis 29.5 75 0.0026 30.2 5.5 97 312-415 24-128 (145)
102 1x5b_A Signal transducing adap 29.3 2.6E+02 0.0089 27.1 9.8 109 307-432 16-124 (163)
103 2fv2_A RCD1 required for cell 28.4 4.1E+02 0.014 28.2 11.5 105 451-566 43-154 (268)
104 1juq_A ADP-ribosylation factor 28.3 3.7E+02 0.013 26.2 10.7 109 307-432 14-127 (171)
105 1dvp_A HRS, hepatocyte growth 28.0 2.6E+02 0.0089 28.1 9.9 110 307-433 6-115 (220)
106 2of3_A ZYG-9; multifunctional 27.2 4.3E+02 0.015 27.7 11.6 102 304-429 131-232 (266)
107 4hat_C Exportin-1; heat repeat 26.7 9.9E+02 0.034 29.5 25.1 289 295-623 38-345 (1023)
108 3zyq_A Hepatocyte growth facto 26.5 2.5E+02 0.0086 28.5 9.5 111 306-433 8-118 (226)
109 3dad_A FH1/FH2 domain-containi 23.7 5.9E+02 0.02 27.8 12.1 153 298-463 144-315 (339)
110 3ldz_A STAM-1, signal transduc 23.0 3.7E+02 0.013 25.3 9.3 106 308-431 7-112 (140)
111 2x1g_F Cadmus; transport prote 22.8 1E+03 0.035 28.3 25.0 272 304-609 228-595 (971)
112 3g2s_A C-terminal fragment of 22.5 5.1E+02 0.017 24.7 11.0 109 307-432 12-125 (149)
113 1mhq_A ADP-ribosylation factor 22.3 3.8E+02 0.013 25.5 9.3 108 308-432 3-115 (148)
114 3ltj_A Alpharep-4; protein eng 22.3 4.8E+02 0.016 24.3 17.4 59 304-383 13-71 (201)
115 3o2t_A Symplekin; heat repeat, 22.1 5.4E+02 0.018 28.5 11.7 71 305-393 63-133 (386)
116 3eg5_B Protein diaphanous homo 20.8 6.4E+02 0.022 27.5 12.0 132 321-461 134-273 (383)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=98.69 E-value=3.7e-08 Score=94.79 Aligned_cols=98 Identities=21% Similarity=0.383 Sum_probs=83.9
Q ss_pred CCeEEEEeC-CCCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEecCC-----C-
Q 002912 12 NPMQVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP-----E- 82 (867)
Q Consensus 12 ~~VKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~-----~- 82 (867)
-|.|||+++ +++.|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|+.+. +..++|+-. +
T Consensus 27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 106 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP 106 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence 468999996 4689999999999987666667899999999999999999999999999864 689999732 1
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002912 83 YSTELALSFQEPTGCSYIWDNICNVQR 109 (867)
Q Consensus 83 ~g~DlALSFQE~~GC~~IWe~I~~VQ~ 109 (867)
....+||.|..++.|+++|+.|.+.|.
T Consensus 107 k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 107 KPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 125799999999999999999999874
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.85 E-value=0.0029 Score=62.83 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=157.5
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.|...+.+++ .+.|..++..|..++.-.. ..-..+++.|.++.+-..|.+++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 566777777665 5677888877777654321 234566788999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 465 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~ 465 (867)
+++.. |..+.+.. .+..|++.| .+.++.++.....+|..|.... +.....+.+ ..++.|++-|..
T Consensus 74 ~~~~~-~~~~~~~~---~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVDAG---GVEVLVKLL-TSTDSEVQKEAARALANIASGP-------DEAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHHTT---HHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChHH-HHHHHHCC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHcC--
Confidence 88874 55555433 344555544 5678999999999999997421 112222333 345655544321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
..+.+....+..|+.+..++..+ +..+...+++..++.++.+.+.-++..|++++..+.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-C
Confidence 12445667788888877765443 4567778899999999999999999999999999876 4
Q ss_pred hhHHHHHHHhhCcHHHHHHHHH
Q 002912 546 DEHLINHFVKNNLLKPIVDAFV 567 (867)
Q Consensus 546 Defy~ryiIk~nLf~PIl~~f~ 567 (867)
+.-..+.+++.+++.+++.++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
Confidence 5557788999999999988774
No 3
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.67 E-value=0.00012 Score=70.04 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=82.7
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEec-----CCC-
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 82 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~- 82 (867)
-+.|+|++.+ ++.|.++|+|-+..-.........|++|.+.....+|.+.|.++-.|+... +.-++|+ |.+
T Consensus 13 ~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 92 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDA 92 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCS
T ss_pred EEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCC
Confidence 4679999963 578999999999886655567799999999988899999999999998764 5678898 322
Q ss_pred ccccccccccCccchhHHHHHHHHHhhcc
Q 002912 83 YSTELALSFQEPTGCSYIWDNICNVQRNL 111 (867)
Q Consensus 83 ~g~DlALSFQE~~GC~~IWe~I~~VQ~~~ 111 (867)
.-.-+||.|-.++-++++.+.|.+.|...
T Consensus 93 ~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 93 KLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 11358999999999999999999999755
No 4
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.66 E-value=0.009 Score=64.06 Aligned_cols=203 Identities=11% Similarity=0.167 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHhCCC----------CccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHH-HHcCCCc
Q 002912 303 DSTFIQELFARLRSP----------TTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQDK 371 (867)
Q Consensus 303 d~~FL~eLF~~l~~~----------~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~-~L~~~d~ 371 (867)
+.+-|++....+.++ ..+.+.|..+..-|.++|. ++. .. ..+++.|.++.+-. .|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d--na----~~~~~~G~l~~Lv~~lL~s~~~ 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD--NA----ADFCQLSGMHLLVGRYLEAGAA 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH--HH----HHHHHTTHHHHHHHTTTTCSSH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh--hH----HHHHHcCCHHHHHHHHHcCCCH
Confidence 356678888888887 3344566666655555543 322 12 24678898888877 8999999
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 002912 372 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 451 (867)
Q Consensus 372 ~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~ 451 (867)
.+|..|+-+|..+...+|. .|..+++.. -+..|+.+|-.+.+..++...+-+|-.|.-... +....|+. .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g---~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~---~ 166 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAA-IQEQVLGLG---ALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR---L 166 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHTT---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhCCHH-HHHHHHHCC---CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHH---C
Confidence 9999999999999999997 577777654 344455555556678888888888888763211 12223333 2
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhH
Q 002912 452 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 531 (867)
Q Consensus 452 ~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~ 531 (867)
..++.|+.-|... ...+....|-.|+.++..+. ..+.++...+++..++.||.+++.-++
T Consensus 167 ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 167 DGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp THHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSCCSTHH
T ss_pred CCHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCCChhHH
Confidence 4566666655321 23445566777777666643 456678889999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 002912 532 VAAVRFVRTILSR 544 (867)
Q Consensus 532 LaAlRF~R~iI~l 544 (867)
-.|++.+.+|+..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 5
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=97.64 E-value=0.00015 Score=69.55 Aligned_cols=100 Identities=8% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeC-CCcceeEEEEecCCCcceEEeecCCCccccccc---CeEEEecCCCc--c
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSME-RSEELCLFVIDEEDNETILLHRISPDDIYRKQE---DTIISWRDPEY--S 84 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e-~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq---eTLIvWte~~~--g 84 (867)
-+.|+|++.. ++.|.++|+|-+..-... ....+.|++|.+.....+|.+.|.++-.|++.. .+.+.|..++. -
T Consensus 16 ~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~ 95 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKL 95 (130)
T ss_dssp EEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEE
T ss_pred EEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCce
Confidence 4679999964 468999999999875433 245699999999888899999999999998875 68888873321 2
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 002912 85 TELALSFQEPTGCSYIWDNICNVQRNL 111 (867)
Q Consensus 85 ~DlALSFQE~~GC~~IWe~I~~VQ~~~ 111 (867)
.-+||.|-.++-++++-+.|.+.|...
T Consensus 96 ~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 96 ETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999998765
No 6
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00029 Score=67.06 Aligned_cols=97 Identities=9% Similarity=0.244 Sum_probs=79.1
Q ss_pred CCCeEEEEeCCCCCceeccceEEEEEeeCCCcceeEEEEecCC-CcceEEeecCCCcccccc-cCeEEEecCCC---cc-
Q 002912 11 ANPMQVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEED-NETILLHRISPDDIYRKQ-EDTIISWRDPE---YS- 84 (867)
Q Consensus 11 ~~~VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d-~~~LL~s~I~~~d~YqkQ-qeTLIvWte~~---~g- 84 (867)
.-+.|+|+.. ++.|.+||+|.+..--.+ .....|++|.+.. +..+|.+.|.++-.|+.. .+.+.+|.=+. .+
T Consensus 17 ~~raKLf~~~-~~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~ 94 (125)
T 2ec1_A 17 SKKCKLFYKK-DNEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEK 94 (125)
T ss_dssp EEEEEEEEEC-SSSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSS
T ss_pred EEeeEEEEec-CCCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCC
Confidence 4577899996 479999999999885433 5679999999986 789999999999999997 47888886321 12
Q ss_pred -----ccccccccCccchhHHHHHHHHHhh
Q 002912 85 -----TELALSFQEPTGCSYIWDNICNVQR 109 (867)
Q Consensus 85 -----~DlALSFQE~~GC~~IWe~I~~VQ~ 109 (867)
.-+||.|-.++-++++.+.|.+.|.
T Consensus 95 ~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 95 NATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp SSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 2489999999999999999988774
No 7
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=97.52 E-value=0.00029 Score=72.12 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=81.8
Q ss_pred CCeEEEEe--C-CCCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEecC---CCc
Q 002912 12 NPMQVYRL--N-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRD---PEY 83 (867)
Q Consensus 12 ~~VKVY~L--~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte---~~~ 83 (867)
-|.|+|++ . +++.|.+||+|-+..-........+|++|.+.....+|.+.|.++-.|+++. +.-++|+- ...
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad 130 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 130 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTT
T ss_pred EeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCC
Confidence 46789999 3 3578999999999986555567799999999999999999999999999874 56789942 211
Q ss_pred c----ccccccccCccchhHHHHHHHHHhhcc
Q 002912 84 S----TELALSFQEPTGCSYIWDNICNVQRNL 111 (867)
Q Consensus 84 g----~DlALSFQE~~GC~~IWe~I~~VQ~~~ 111 (867)
+ .-+||.|-.++-+..+...|...|..+
T Consensus 131 ~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 131 ECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 1 348999999999999999999998754
No 8
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=97.40 E-value=0.00042 Score=67.22 Aligned_cols=100 Identities=13% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEec---CCCcc
Q 002912 11 ANPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS 84 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~g 84 (867)
.-+.|+|++.. ++.|.+||+|-+..-.........|++|.+.....+|.+.|.++-.|++.. +.-++|. |-..|
T Consensus 27 ~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg 106 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEG 106 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTS
T ss_pred EEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCC
Confidence 34679999863 578999999999986555566799999999989999999999999999875 4567895 21112
Q ss_pred ----ccccccccCccchhHHHHHHHHHhhc
Q 002912 85 ----TELALSFQEPTGCSYIWDNICNVQRN 110 (867)
Q Consensus 85 ----~DlALSFQE~~GC~~IWe~I~~VQ~~ 110 (867)
.-+|+.|-.++-++++.+.|...|..
T Consensus 107 ~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~ 136 (140)
T 4hat_B 107 EAEAFTFAIRFGSKENADKFKEEFEKAQEI 136 (140)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 9
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00057 Score=69.40 Aligned_cols=100 Identities=12% Similarity=0.245 Sum_probs=81.4
Q ss_pred CCCeEEEEeCC-CCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCccccccc--CeEEEecCC---Ccc
Q 002912 11 ANPMQVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP---EYS 84 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~---~~g 84 (867)
..|.|+|++.. ++.|.+||+|.+..-.......++|++|.+.....+|.+.|.++-.|++.. +.-+||.=+ ..|
T Consensus 78 ~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdg 157 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEG 157 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTS
T ss_pred EEeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCC
Confidence 34779999864 578999999999986554456799999999888999999999999999984 457888721 112
Q ss_pred ----ccccccccCccchhHHHHHHHHHhhc
Q 002912 85 ----TELALSFQEPTGCSYIWDNICNVQRN 110 (867)
Q Consensus 85 ----~DlALSFQE~~GC~~IWe~I~~VQ~~ 110 (867)
.-+||.|-.++-+..+...|...|..
T Consensus 158 e~k~e~~aIRFk~~E~A~eF~~~~eeaq~~ 187 (191)
T 3m1i_B 158 EAEAFTFAIRFGSKENADKFKEEFEKAQEI 187 (191)
T ss_dssp SCEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.33 E-value=0.022 Score=61.62 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
.+++.|...++++. +..-|..++..|..++.... . .-+.+++.|+++.+-..|+++++.+|..|+..|..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNS----L----QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH----H----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH----H----HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56777887777652 45667888888887765321 1 124567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
...+|. .|..+++.. .+..|++.|-.+.+..++.+.+.+|..|.....-.. .. . +....++.|+.-+..
T Consensus 135 ~~~~~~-~~~~~~~~~---~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-~----~~~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 135 AGDSTM-CRDYVLDCN---ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EF-A----KVSPCLNVLSWLLFV- 203 (450)
T ss_dssp HTTCHH-HHHHHHHTT---CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CG-G----GTGGGHHHHHHHTTC-
T ss_pred ccCCHH-HHHHHHHCC---CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CH-H----HHHHHHHHHHHHHcc-
Confidence 998876 466666543 455666666556788999999999999985321100 01 1 124455655543321
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 465 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
....+....+..|+.+..+..-. +..+....++..++.++...+.-++..|++.+..+..-
T Consensus 204 ------------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 204 ------------------SDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTSSSHHH-HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHCCCcHH-HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 12356667788888887654433 34566778999999999988889999999999998765
Q ss_pred chhHHHHHHHhhCcHHHHHHHHHH
Q 002912 545 HDEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 545 kDefy~ryiIk~nLf~PIl~~f~~ 568 (867)
.++ ..+.++..+++.+++.++..
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTC
T ss_pred ChH-HHHHHHHCccHHHHHHHHcC
Confidence 554 56678888999988888753
No 11
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.33 E-value=0.00046 Score=67.62 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeC----CCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEec--CCCc-
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSME----RSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWR--DPEY- 83 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e----~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWt--e~~~- 83 (867)
-+.|+|.+.. ++.|.++|+|.+..-... ......|++|.+.....+|.+.|.++-.|++..++-++|+ |++.
T Consensus 32 ~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 111 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ 111 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSC
T ss_pred EEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCC
Confidence 4678999963 578999999999876432 2346899999998888999999999999999999999999 4321
Q ss_pred -cccccccccCccchhHHHHHH
Q 002912 84 -STELALSFQEPTGCSYIWDNI 104 (867)
Q Consensus 84 -g~DlALSFQE~~GC~~IWe~I 104 (867)
-.-++|.|-.++-+. .+..|
T Consensus 112 ~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 112 GVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp CEEEEEEECCHHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHHH-HHHHH
Confidence 245899999888874 44443
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.29 E-value=0.032 Score=55.85 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..+..++..+.+++. +.+..++..|..+..- . ...-+.+++.|.++.+-..|.+++..++..++.+|..+
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~----~----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD----G----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH----H----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC----C----CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346777787776554 4566777766544332 1 12234578899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHh
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 463 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~ 463 (867)
...++.. +..+.+.. .+..|++. +.+.++.++.+...+|..|..... .+ ...+.+ ..++.|++-|..
T Consensus 82 ~~~~~~~-~~~i~~~g---~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 82 ASGGNEQ-IQAVIDAG---ALPALVQL-LSSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp TTSCHHH-HHHHHHTT---HHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGGC
T ss_pred hcCCHHH-HHHHHHcC---CHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCc----hH---HHHHHHCCCHHHHHHHHhC
Confidence 9988875 44455432 44555654 455789999999999999964321 11 122333 345555554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
....+....+..|+.+...... .+..+...+++..++.++...+.-++..|++.+.++..
T Consensus 150 -------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 150 -------------------PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 1234445666777766654433 34456778899999999999999999999999999885
Q ss_pred cchhHHHHHHHhhCcHHHHHHHHHH
Q 002912 544 RHDEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 544 lkDefy~ryiIk~nLf~PIl~~f~~ 568 (867)
.. +-....+++.+.+.+++.++..
T Consensus 210 ~~-~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 GG-NEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp SC-HHHHHHHHHTTHHHHHHTTTTC
T ss_pred CC-HHHHHHHHHCCcHHHHHHHhCC
Confidence 44 4466778899999999887743
No 13
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=97.24 E-value=0.00062 Score=65.80 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCeEEEEeCC-CCCceeccceEEEEEeeCC----CcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCC----
Q 002912 12 NPMQVYRLND-DGKWDDQGTGHVTVDSMER----SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPE---- 82 (867)
Q Consensus 12 ~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~----~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~---- 82 (867)
-+.|+|++.. ++.|.++|+|.+..-.... .....|++|.+.....+|.+.|.++-.|+++.+.-++|+-.+
T Consensus 20 ~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 99 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQ 99 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CC
T ss_pred EEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCC
Confidence 4678999964 4789999999998765431 246899999999888999999999999999889999998321
Q ss_pred ccccccccccCccchhHHHHH
Q 002912 83 YSTELALSFQEPTGCSYIWDN 103 (867)
Q Consensus 83 ~g~DlALSFQE~~GC~~IWe~ 103 (867)
.-.-++|.|-.++-+ ..+..
T Consensus 100 ~~~~~lirfk~~e~a-~lf~~ 119 (138)
T 2y8g_A 100 GVKVFLISASSKDTG-QLYAA 119 (138)
T ss_dssp CCCEEEEECCHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHH-HHHHH
Confidence 124689999888766 34443
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.23 E-value=0.047 Score=54.03 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=141.0
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++.|...+++++ .+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 44 g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD--SEVQKEAARALANIASGP----D----EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC----h----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46888888888754 566777777666654321 2 2234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 463 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 463 (867)
..++|... ..+.+. -.+..|++. +.+.++.++.....+|..|.... + .....+. ...++.|+.-+..
T Consensus 114 ~~~~~~~~-~~~~~~---~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 114 ASGPDEAI-KAIVDA---GGVEVLVKL-LTSTDSEVQKEAARALANIASGP----D---EAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp TTSCHHHH-HHHHHT---THHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCHHHH-HHHHHC---CCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC----H---HHHHHHHHCcCHHHHHHHHCC
Confidence 98888754 344442 255566654 45678899999999999886431 1 1112223 3345555554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
..+.+....+..|+-+... ....+..+...+++..++.+++..+.-++-.|++.++++..
T Consensus 182 -------------------~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 182 -------------------TDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1234555667777766663 33456677888999999999999989999999999999887
Q ss_pred cchhHH
Q 002912 544 RHDEHL 549 (867)
Q Consensus 544 lkDefy 549 (867)
.....+
T Consensus 242 ~~~~~~ 247 (252)
T 4hxt_A 242 GGWLEH 247 (252)
T ss_dssp TCBCCC
T ss_pred CCCccc
Confidence 655433
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.16 E-value=0.085 Score=59.21 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=156.5
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
.++.|...+.+++ +..-|..++..|..+|.-. ...-..+++.|.++.+-..|.+++..+|..|+-.|..|.
T Consensus 118 ~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 118 VVPRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3555555555432 2455667776666655421 123345678899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 465 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 465 (867)
..+|. .|..+.... .+..|+..|-.+.+..++...+.+|..|....... +. ......++.|+.-|..
T Consensus 189 ~~~~~-~~~~i~~~g---~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~---~~----~~~~~~l~~L~~lL~~-- 255 (528)
T 4b8j_A 189 GDSPK-CRDLVLANG---ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP---SF----EQTRPALPALARLIHS-- 255 (528)
T ss_dssp HTCHH-HHHHHHHTT---CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC---CH----HHHTTHHHHHHHHTTC--
T ss_pred CCChh-hHHHHHHCC---cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC---cH----HHHHHHHHHHHHHHCC--
Confidence 87776 466666543 45556666656778999999999999998754211 11 1124455555554311
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
..+.+....|..|+.+......++ ..++...++..++.++...+.-++..|++.+..+..-.
T Consensus 256 -----------------~~~~v~~~a~~aL~~l~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 256 -----------------NDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 134567778888888886655443 34566789999999999988999999999999988755
Q ss_pred hhHHHHHHHhhCcHHHHHHHHHH
Q 002912 546 DEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 546 Defy~ryiIk~nLf~PIl~~f~~ 568 (867)
++ ....+++.+++.+++.++..
T Consensus 318 ~~-~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 318 DA-QTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp HH-HHHHHHTTTHHHHHHHHHHS
T ss_pred HH-HHHHHHHhhhHHHHHHHHcC
Confidence 54 66678899999999988863
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.12 E-value=0.25 Score=55.43 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=160.5
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILIL 383 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L-~~~d~~ir~~atDILi~ 383 (867)
..++-|...+.++ +.+-|..++..|..+|.-. +..| ..++..|.++.|-..| .+.+..++..++..|..
T Consensus 160 g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~----~~~~----~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 160 GAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS----PKCR----DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC----HHHH----HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC----hhhH----HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4577788888774 4566778888887776422 2222 3456789999888888 67788999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 462 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~ 462 (867)
+....|......+ ...+..|+..| .+.++.++.....+|..|.+... .....+.+ ..++.|+.-|.
T Consensus 230 L~~~~~~~~~~~~-----~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 230 FCRGKPQPSFEQT-----RPALPALARLI-HSNDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHCSSSCCCHHHH-----TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCCcHHHH-----HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHHHHHHHHHc
Confidence 9988654322211 23566667654 66788999999999998875421 12223333 45666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhcc-chhhHHHHHHHHHHH
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFVRTI 541 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRF~R~i 541 (867)
. ..+.+....+..|+-++.... .....++..+++..++.++... +.-++..|++.+.++
T Consensus 297 ~-------------------~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 H-------------------PSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred C-------------------CChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 2 123445566777777776443 3445677788999999999988 889999999999998
Q ss_pred hccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 542 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 542 I~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
..- +.-...+++..+++.+++.++... ...+...|+.-|-.+.
T Consensus 357 ~~~-~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 357 TAG-NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HTS-CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 864 445677899999999999998653 2234444444333333
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.09 E-value=0.074 Score=59.93 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=158.3
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
..++.|...+.+ .+.+-++.++..|..+|.-. ...+ ..+..|+++.|-..|.+.+..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457778887876 34566788888888777543 1211 23457899999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 462 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~ 462 (867)
+....+..+.. ++.. .++..|+..| .+.+..++.....+|..|.... +.....+.+ ..++.|+.-|.
T Consensus 284 L~~~~~~~~~~-~~~~---~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VIDV---RIPKRLVELL-SHESTLVQTPALRAVGNIVTGN-------DLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHHT---TCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTT
T ss_pred HhCCCHHHHHH-HHhc---CcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCC-------HHHHHHHHHcchHHHHHHHHc
Confidence 99998876554 3332 2556666654 5678888888888888876421 112222332 34454444331
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
. ....+-...|-.|+.+.......++ .++..+++..++.++...+.-++-.|+..+..+.
T Consensus 352 ~-------------------~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 S-------------------PKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C-------------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 0223444556666666654433333 4557789999999999888889999999999987
Q ss_pred ccchh--HHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 543 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 543 ~lkDe--fy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
...+. -+.+++++.+++.+++.++... +.-+-.+++..+..|
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 65443 4778999999999999988542 223334445444443
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.87 E-value=0.35 Score=54.90 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=154.8
Q ss_pred HHHHHHHHhCCCCcc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002912 306 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 382 (867)
Q Consensus 306 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi 382 (867)
.+.-|...+..+..+ ..-.+.++..|..+|.-....... ..-.|++++|-..|.+++..++..++-.|.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH--------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH--------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 356667777665433 233455555555554422222221 112467888889999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002912 383 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 462 (867)
Q Consensus 383 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 462 (867)
.+.++++..... +.... .+..|++. +...+..++.....+|..|.-.. ...+..+++ ...++.|+.-|
T Consensus 277 ~l~~~~~~~~~~-v~~~g---~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~---~g~l~~L~~LL- 344 (529)
T 3tpo_A 277 YLTDGPNERIEM-VVKKG---VVPQLVKL-LGATELPIVTPALRAIGNIVTGT---DEQTQKVID---AGALAVFPSLL- 344 (529)
T ss_dssp HHHSSCHHHHHH-HHTTT---CHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH---TTGGGGHHHHT-
T ss_pred HhhhhhhhhHHH-HHhcc---chHHHHHH-hcCCChhHHHHHHHHHHHHHccc---hHHHHHHhh---cccHHHHHHHH-
Confidence 999988875443 33322 44455654 45678888888888888775321 111111111 12233333322
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
.. ....+-...|-.|+-+..+.. ..+..++..+++..++.++.+.+.-++-.|...+.++.
T Consensus 345 ~~------------------~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 345 TN------------------PKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp TC------------------SSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11 122333445555655555433 33556778899999999999999899999999999988
Q ss_pred ccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002912 543 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 543 ~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 589 (867)
.-.+.-..+||++.+.+.|+++++.. .|.=+-..+|+-++.|.+
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 77777788999999999999998853 344455567777777653
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.64 E-value=0.31 Score=54.86 Aligned_cols=202 Identities=8% Similarity=0.049 Sum_probs=136.9
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++-|...+.+++ .+-+..++..|..++.-. + .....+++.|+++.|-..|.+.+..++..++.+|..+
T Consensus 257 ~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~-----~---~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 257 QALPTLAKLIYSMD--TETLVDACWAISYLSDGP-----Q---EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp GGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSC-----H---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCC-----H---HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 35666777776543 466777777777666421 1 2234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 463 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 463 (867)
...++...+. +... -++..|+..| .+.+..++.....+|..|.... + .....+. ...++.|+.-|..
T Consensus 327 ~~~~~~~~~~-~~~~---~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~----~---~~~~~~~~~~~l~~L~~lL~~ 394 (530)
T 1wa5_B 327 VTGNDLQTQV-VINA---GVLPALRLLL-SSPKENIKKEACWTISNITAGN----T---EQIQAVIDANLIPPLVKLLEV 394 (530)
T ss_dssp TTSCHHHHHH-HHHT---THHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHH-HHHc---chHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC----H---HHHHHHHHCCCHHHHHHHHhc
Confidence 9988875544 3332 2566666655 4557888888888888875321 1 1222333 3566777765533
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc--hhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHH
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY--RIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 541 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y--riK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i 541 (867)
. .+.+-...+..|+.++..... ....++...+++..++.++...+.-++..|+..+.++
T Consensus 395 ~-------------------~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 395 A-------------------EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 123334556666666654333 3344566788999999999988999999999999998
Q ss_pred hccchh
Q 002912 542 LSRHDE 547 (867)
Q Consensus 542 I~lkDe 547 (867)
+...+.
T Consensus 456 ~~~~~~ 461 (530)
T 1wa5_B 456 LKMGEA 461 (530)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 866544
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.63 E-value=0.057 Score=61.37 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=128.1
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhhHHHHHH
Q 002912 351 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 426 (867)
Q Consensus 351 ~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 426 (867)
+.+++.|.++.+-..|.+++..++..|+-.|..|..++|. .|..+.+.... ..|+..|-.. ...++...++-
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i---~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCH---HHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCc---HHHHHHHhccchhHhHHHHHHHHHH
Confidence 3578899999999999999999999999999999988887 57777765433 2334333322 22344555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh
Q 002912 427 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 506 (867)
Q Consensus 427 aLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 506 (867)
+|..|.-....... +. .-...++.|+.-|. ...+++....|-.|+++..++..+.
T Consensus 232 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~a~~aL~~l~~~~~~~~ 286 (529)
T 3tpo_A 232 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 286 (529)
T ss_dssp HHHHHHCCCTTCCC----HH--HHHHHHHHHHHHTT-------------------SSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhcccchhh----HH--HHhhHHHHHHHHhc-------------------CCcHHHHHHHHHHHHHhhhhhhhhH
Confidence 66666532211110 00 11233444444221 1234567778888898887766554
Q ss_pred hhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHH
Q 002912 507 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 567 (867)
Q Consensus 507 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~ 567 (867)
..+....++.+++.|+.+.+..++..|+|.+.+++...|+ ....++..+.+.+++.++.
T Consensus 287 -~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 287 -EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp -HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGHHHHTT
T ss_pred -HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH-HHHHHhhcccHHHHHHHHc
Confidence 4567788999999999999999999999999998866554 6788899999999888764
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.62 E-value=0.27 Score=55.67 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=153.7
Q ss_pred HHHHHHHHhCCCCcc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002912 306 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 382 (867)
Q Consensus 306 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi 382 (867)
.+.-|...+.+++.+ ..-.+.+...|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355666777665533 233455555555544422222211 112467888888999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002912 383 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 462 (867)
Q Consensus 383 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 462 (867)
.+.++++..... +... -.+..|++.| ...+..++.....+|..|.-.. ...+..++ +.. .+.+|.
T Consensus 258 ~L~~~~~~~~~~-i~~~---g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~----~~g---~l~~L~ 322 (510)
T 3ul1_B 258 YLTDGPNERIEM-VVKK---GVVPQLVKLL-GATELPIVTPALRAIGNIVTGT---DEQTQKVI----DAG---ALAVFP 322 (510)
T ss_dssp HHTSSCHHHHHH-HHTT---TCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH----HTT---GGGGCC
T ss_pred HHhhchhhhHHH-HHhc---ccchhhhhhh-cCCChhhhhHHHHHHHHhhcCC---HHHHHHHh----hcc---chHHHH
Confidence 999988875443 3332 2445556544 5567788877777777764221 11111111 111 011111
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
.. .......+-...|-.|+-+..... ..+..+...+++..++.++.+.+.-++-.|...+.++.
T Consensus 323 ~L---------------L~~~~~~v~~~A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 323 SL---------------LTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp -C---------------TTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HH---------------hcCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 10 011234455566666666655433 34566778899999999999999999999999999998
Q ss_pred ccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002912 543 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 543 ~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 589 (867)
.-.+.-..+||++.+.+.|+++++.. .+.=+-..+|+.++.|-+
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 87777788999999999999998853 344455667777776643
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.61 E-value=0.34 Score=52.24 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=136.3
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++-|...+.++ +.+-+..++..|..+|... + .....++..|+++.+-..|.+++..+|..++..|..+
T Consensus 192 ~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 192 PCLNVLSWLLFVS--DTDVLADACWALSYLSDGP----N----DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSS----H----HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCC----c----HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4677777777654 3456777777777665421 1 1234567789999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 463 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 463 (867)
..+++...+. +... -.+..|++.| .+.++.++.....+|..|.... ......+. ...++.|+.-|.+
T Consensus 262 ~~~~~~~~~~-~~~~---~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQV-ILNC---SALQSLLHLL-SSPKESIKKEACWTISNITAGN-------RAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHHH-HHTT---THHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHHH-HHHC---ccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhc
Confidence 9998875443 3332 3566666654 5568888888888888775311 11222233 2456666665543
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
. .+.+-...|-.|+-++...+.....+++..+++..++.++...+.-++..|+..+.+++.
T Consensus 330 ~-------------------~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 330 A-------------------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 123344556666666665443333455677899999999999888999999999999887
Q ss_pred cchh
Q 002912 544 RHDE 547 (867)
Q Consensus 544 lkDe 547 (867)
..+.
T Consensus 391 ~~~~ 394 (450)
T 2jdq_A 391 LGEQ 394 (450)
T ss_dssp HHHH
T ss_pred hchh
Confidence 5544
No 23
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.58 E-value=0.31 Score=47.27 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=133.6
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
.+-|...+.++ +.+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..|+-.|..+..
T Consensus 14 ~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~----~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 14 LPQMVQQLNSP--DQQELQSALRKLSQIASGG----N----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSC----H----HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcCC--CHHHHHHHHHHHHHHHcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33444555543 4567788888887766322 1 223457788999999999999999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASC 465 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~~~ 465 (867)
+++.. +..+++.. .+..|++.| .+.++.++.....+|..|.... + .....+. ...++.|++-|..
T Consensus 84 ~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~-- 149 (210)
T 4db6_A 84 GGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS-- 149 (210)
T ss_dssp SCHHH-HHHHHHTT---CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CCcHH-HHHHHHCC---CHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCC----H---HHHHHHHHcCcHHHHHHHHcC--
Confidence 88875 44455443 344556544 6678999999999999986421 1 1122222 3345555554421
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
....+....+..|+-++... -..+..+...+++..+..++...+.-++-.|+.+++.+.
T Consensus 150 -----------------~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 -----------------PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 12345566777777777643 344667888899999999999988899999999998764
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.55 E-value=0.32 Score=48.53 Aligned_cols=196 Identities=14% Similarity=0.138 Sum_probs=136.6
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++.|...+++++ .+-|..++..|..++.-. +.. -..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 54 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~----~~~----~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPN--EQILQEALWALSNIASGG----NEQ----IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC----HHH----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC----HHH----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 56888999888765 566777887777665321 222 24567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 463 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 463 (867)
...++.... .+.... .+..|++.| .+.++.++.....+|..|.... +.....+. ...++.|+.-|..
T Consensus 124 ~~~~~~~~~-~~~~~~---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 124 ASGGNEQIQ-AVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG-------NEQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp TTSCHHHHH-HHHHTT---HHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTCHHHHHHGGGC
T ss_pred hcCCchHHH-HHHHCC---CHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC-------hHHHHHHHHCCCHHHHHHHHCC
Confidence 988876433 333322 555666654 6678899999999999987432 11222222 3445665554321
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
..+.+....+..|+-++.++. ..+..+...+++..++.++...+.-++-.|++.+.++.
T Consensus 192 -------------------~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 -------------------PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 123455667777777765443 34556778889999999999988899999998887653
No 25
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=96.48 E-value=0.0093 Score=56.91 Aligned_cols=99 Identities=14% Similarity=0.227 Sum_probs=73.1
Q ss_pred CCCeEEEEeC-CCCCceeccce-----EEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcc
Q 002912 11 ANPMQVYRLN-DDGKWDDQGTG-----HVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYS 84 (867)
Q Consensus 11 ~~~VKVY~L~-~~~~W~D~GTG-----~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g 84 (867)
+.+++||... +.+.|..+|+| .|+.-......-..|+-+...+...++++.|.++-.|.+--.+..+|.+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~-- 85 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR-- 85 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS--
T ss_pred EEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC--
Confidence 3467899875 35689999998 333333233333445545557888999999999999999999999999885
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 002912 85 TELALSFQEPTGCSYIWDNICNVQRNL 111 (867)
Q Consensus 85 ~DlALSFQE~~GC~~IWe~I~~VQ~~~ 111 (867)
.=++|+|++.+-+...-+.+.+.....
T Consensus 86 ~~~GL~F~se~eA~~F~~~~~~al~~~ 112 (130)
T 1qc6_A 86 QVYGLNFASKEEATTFSNAMLFALNIM 112 (130)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999888877777766544
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.44 E-value=0.3 Score=47.39 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=126.9
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 352 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 352 ~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
.....|.++.+...|.++|..++..|+-.|..+..+++...+ .+.+.. .+..|++.| .+.++.++.+...+|..|
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AVIDAG---ALPALVQLL-SSPNEQILQEALWALSNI 81 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHTT---HHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999988887544 344432 455666554 556889999988998888
Q ss_pred cCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhH
Q 002912 432 LDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 510 (867)
Q Consensus 432 LDp~~m~~~e~d~FL~~FY~~-~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i 510 (867)
.... +.....+.+. .++.|+.-|.. ..+.+....+-.|+.+..+..- .+..+
T Consensus 82 ~~~~-------~~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 134 (210)
T 4db6_A 82 ASGG-------NEQIQAVIDAGALPALVQLLSS-------------------PNEQILQEALWALSNIASGGNE-QIQAV 134 (210)
T ss_dssp TTSC-------HHHHHHHHHTTCHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred hcCC-------cHHHHHHHHCCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 5211 1222333333 45666554421 1234445566666666654333 34456
Q ss_pred hhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHH
Q 002912 511 LLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 567 (867)
Q Consensus 511 l~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~ 567 (867)
+..+++..++.+++..+.-++..|+..+.++..-.++ ....+++.+.+.+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 7888999999999998999999999999999875444 5678889999999998775
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.10 E-value=0.082 Score=59.94 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=124.8
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhhHHHHHH
Q 002912 351 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 426 (867)
Q Consensus 351 ~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 426 (867)
+.+++.|.++.+-..|++++..++..|+-.|..|..++|. .|..+.+.... ..|+..|-.. ...++...+.-
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i---~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCH---HHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCh---HHHHHHHHhccchhhhHHHHHHHHH
Confidence 3567899999999999999999999999999999888887 47777665433 2334433321 22344555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh
Q 002912 427 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 506 (867)
Q Consensus 427 aLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 506 (867)
+|..+.-....... +. .-...++.|++-|. ....++....|-.|+++..+...++
T Consensus 213 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 213 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHHCCCSSCCC----HH--HHHHHHHHHHHHTT-------------------CSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhcccchhH----HH--HHHhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhhchhhhH
Confidence 66666532221110 10 11223344433221 1234567778888888887666554
Q ss_pred hhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHH
Q 002912 507 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 507 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f 566 (867)
..+....++.+++.|+.+.+.-++..|+|.+.++....|+ ....++..+.+.+++.++
T Consensus 268 -~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 268 -EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp -HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGCC-CT
T ss_pred -HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH-HHHHHhhccchHHHHHHh
Confidence 3566778999999999999999999999999998866555 678889999988876655
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=95.90 E-value=0.032 Score=52.02 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCeEEEEeCC-CCCceecc--ceEEEEEeeC--CCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccc
Q 002912 11 ANPMQVYRLND-DGKWDDQG--TGHVTVDSME--RSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 85 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~G--TG~~s~~~~e--~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 85 (867)
+.++.||...+ .+.|.-.| .|..++.+.. ......|+.+.-.+...++++.|.++-.|.+--.+...|.+.+ +
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~ 85 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR--Q 85 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS--C
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCC--E
Confidence 45677898754 45899999 6774333332 2334555557767889999999999999999999999999986 6
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002912 86 ELALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 86 DlALSFQE~~GC~~IWe~I~~V 107 (867)
=++|.||..+-+....+.+.+.
T Consensus 86 ~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 86 VYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHH
Confidence 7899999999988877766554
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.88 E-value=2.3 Score=46.83 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=153.6
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++.|...+++++ ..-+..++..|..+|.-..+. | ..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 101 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~----~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 101 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA----K----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTH----H----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcch----H----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777888887654 567788888888887653221 2 2456789999999999999999999999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
...++.. |..+.... -+..|++.|-......++.....+|+.|-.... .++.++ +.. .+.+|...
T Consensus 171 a~~~~~~-~~~i~~~~---~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~----~~g---~~~~L~~l 235 (529)
T 1jdh_A 171 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EAG---GMQALGLH 235 (529)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHH----HTT---HHHHHHTT
T ss_pred HhCCHHH-HHHHHHCC---CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HCC---CHHHHHHH
Confidence 7777664 44444432 255666666555556666677778887764221 222222 221 23444432
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 465 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
... ....+..+.+..|+.+....... .....++..++.++++.+.-++..|.+.+..+..-
T Consensus 236 l~~---------------~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 236 LTD---------------PSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTS---------------SCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhC---------------CChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 110 12344555666666666554322 22347888899999999999999999999998554
Q ss_pred chhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHH
Q 002912 545 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 583 (867)
Q Consensus 545 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LEl 583 (867)
+.-....+++.+.+.+++.++....+...+...|+.-|
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34466788899999999999987655445555554433
No 30
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=95.85 E-value=0.026 Score=53.35 Aligned_cols=99 Identities=14% Similarity=0.284 Sum_probs=74.1
Q ss_pred CCCeEEEEeCCC--CCceec--cceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccc
Q 002912 11 ANPMQVYRLNDD--GKWDDQ--GTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 86 (867)
Q Consensus 11 ~~~VKVY~L~~~--~~W~D~--GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 86 (867)
+.+++||.-++. +.|... |.|-|+..+ +.....+ -|.+-.+...+++..|.++-.|.+.-.+.-.|.+...+.=
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~-d~~~~~y-RIv~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNVY-RIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEE-ETTTTEE-EEEEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEE-cCCCCEE-EEEEccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEE
Confidence 457889999763 489994 444444333 3233333 3334558889999999999999999999999999986788
Q ss_pred ccccccCccchhHHHHHHHHHhhcc
Q 002912 87 LALSFQEPTGCSYIWDNICNVQRNL 111 (867)
Q Consensus 87 lALSFQE~~GC~~IWe~I~~VQ~~~ 111 (867)
++|.||.++-+...-+.|..++..+
T Consensus 86 ~GLnF~s~~eA~~F~~~~~~~~~~l 110 (120)
T 1ddw_A 86 YGLGFSSEHHLSKFAEKFQEFKEAA 110 (120)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777777666543
No 31
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=95.75 E-value=0.036 Score=51.90 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCCCeEEEEeCC-CCCceeccc---eE--EEEEeeCCCcceeEEEEecC-CCcceEEeecCCCcccccccCeEEEecCCC
Q 002912 10 NANPMQVYRLND-DGKWDDQGT---GH--VTVDSMERSEELCLFVIDEE-DNETILLHRISPDDIYRKQEDTIISWRDPE 82 (867)
Q Consensus 10 ~~~~VKVY~L~~-~~~W~D~GT---G~--~s~~~~e~~~~~~L~V~sE~-d~~~LL~s~I~~~d~YqkQqeTLIvWte~~ 82 (867)
.+.+++||.-++ .+.|.-.|+ |. |...+........|+.+.-. +...++++.|.++-.|.+.-.+.-.|.+.+
T Consensus 7 ~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~ 86 (115)
T 1egx_A 7 CSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDAR 86 (115)
T ss_dssp EEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSS
T ss_pred EEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCC
Confidence 345678888754 456999998 55 44333323344566667766 888999999999999999999999999996
Q ss_pred ccccccccccCccchhHHHHHHHHHh
Q 002912 83 YSTELALSFQEPTGCSYIWDNICNVQ 108 (867)
Q Consensus 83 ~g~DlALSFQE~~GC~~IWe~I~~VQ 108 (867)
.=++|.||..+-+....+.+.+.-
T Consensus 87 --~~~GLnF~se~eA~~F~~~v~~al 110 (115)
T 1egx_A 87 --QVWGLNFGSKEDAAQFAAGMASAL 110 (115)
T ss_dssp --CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --EEEEEecCCHHHHHHHHHHHHHHH
Confidence 678999999999988777766543
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.99 Score=52.33 Aligned_cols=237 Identities=15% Similarity=0.126 Sum_probs=145.9
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
.++.|...+.++ +..-++.++..|..+|.-..... ...|+++.+-..|.+.+..++..++-+|..+.
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566666666654 45667778888887765432211 11267888888889999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCC-hhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG-EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d-~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
.+++.. |..+.+.. .+..|++.|....+ ..++.....+|..|.....-....+..++ -...++.|++-|...
T Consensus 292 ~~~~~~-~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 292 CNNYKN-KMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVKLLHPP 364 (644)
T ss_dssp TTCHHH-HHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHHTTSTT
T ss_pred cCCHHH-HHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHHHhCcc
Confidence 988764 55555432 56667777765443 78888888899888532111000011111 112334443322110
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhcc------------------
Q 002912 465 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR------------------ 526 (867)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~------------------ 526 (867)
....+....|..|+-+...-..+ ..++..+++..++.++...
T Consensus 365 ------------------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~ 424 (644)
T 2z6h_A 365 ------------------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424 (644)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred ------------------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence 01233344555555555443333 5677888888888887653
Q ss_pred ----chhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002912 527 ----EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 586 (867)
Q Consensus 527 ----~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 586 (867)
...++.+|++.++++.. +.-....+.+.+.+.|+++++.. ...|+...|+--|-..
T Consensus 425 ~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 425 EGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 484 (644)
T ss_dssp CSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 23567789999998763 33445566799999999998853 3345666665444443
No 33
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.53 E-value=2.2 Score=50.94 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhc---------------------c---ChHhHHHHHHHHHh---
Q 002912 303 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS---------------------L---QMVQQLRLFRDLMN--- 355 (867)
Q Consensus 303 d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~---------------------L---Q~~~R~~lf~~Lv~--- 355 (867)
-+.+++.|+..+.+++ ...|..++..|..+|.-... + .+.-|..-.+.|..
T Consensus 126 wp~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp CTTHHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3568888888887654 34566666666666543211 0 12223333333321
Q ss_pred ----------cCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHH
Q 002912 356 ----------EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFL 425 (867)
Q Consensus 356 ----------~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~ 425 (867)
.++++.+-..+.+++..+|..++..|..+++..|..++.|+- .++..+++. +.+.++.++.+.+
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-----~l~~~l~~~-~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-----NIVEYMLQR-TQDQDENVALEAC 277 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-----HHHHHHHHH-HTCSSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHHHHH-ccCCcHHHHHHHH
Confidence 134555556677888889999999999999998887776643 266666654 4577899999999
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC-------------CCcccccccC-CCCcccCCcHHHHHHH
Q 002912 426 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC-------------PQEGIAQSAS-SGGRVESTKPEILSNI 491 (867)
Q Consensus 426 eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~-------------p~~~~~~~~~-~~~~~~~~~~~ll~~l 491 (867)
+.+..+.+...+ + .+ .+.++..++..++... +.+....+.. ....++......+..+
T Consensus 278 e~l~~l~~~~~~----~-~~----~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 278 EFWLTLAEQPIC----K-DV----LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp HHHHHHTTSTTH----H-HH----HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcchhH----H-HH----HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 999998765421 1 12 2334444444443321 0010000000 1112222222233333
Q ss_pred HHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHH
Q 002912 492 CELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLI 550 (867)
Q Consensus 492 ~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ 550 (867)
.+. ... .++ ..++..+..++.+.+-..+-+|++.+.++..--.+.+.
T Consensus 349 a~~----~~~-------~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 349 ANV----YRD-------ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp HHH----HGG-------GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred HHh----ccH-------HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH
Confidence 332 211 122 34667777778888888999999999998866555443
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.34 E-value=3 Score=48.28 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=156.9
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++.|...+.+++ ..-+..++.-|..+|.-.. . ....+++.|.++.+-..|++.+..++..+++.|..+
T Consensus 98 g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 56788888887754 5668888888888776431 1 123466889999999999999988888899999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
...++.. |..+.... .+..|++.|-......++.....+|+.|-.... .+..++ +.. .+.+|...
T Consensus 168 a~~~~~~-~~~i~~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~----~~g---~l~~L~~l 232 (644)
T 2z6h_A 168 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EAG---GMQALGLH 232 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHH----HTT---HHHHHHTT
T ss_pred HhcCcHH-HHHHHHcC---ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HCC---CHHHHHHH
Confidence 8666653 44444433 355667766555556666777888888864221 233332 222 23344332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 465 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
.. .....+....+..|.-+.++... ......++..++.++++.+.-++..|...+..+..-
T Consensus 233 l~---------------~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 233 LT---------------DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TT---------------CSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hh---------------cCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 01234555666777766655332 223347888899999999989999999999988653
Q ss_pred chhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 002912 545 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFE 585 (867)
Q Consensus 545 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfe 585 (867)
+.-....+++.+.+.+++.++...+.+..+...|+.-|-.
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 4446778889999999999998766555666555554433
No 35
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.16 E-value=3 Score=49.69 Aligned_cols=209 Identities=15% Similarity=0.188 Sum_probs=110.8
Q ss_pred HhhCCHHHHHHHHHHhCC-CCccHHhHHHHHHHHHHHHHh-hhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhh
Q 002912 299 LLKDDSTFIQELFARLRS-PTTLEESKKNLVHFLHEFCGL-SKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLT 376 (867)
Q Consensus 299 ~Lq~d~~FL~eLF~~l~~-~~~~~e~rrdlV~FL~E~c~l-sK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~ 376 (867)
.++.++.|..-|...+.. .+.+..-|.-+...|+..+.- -..+.+..|..+-..|++ +|.++++.+|..
T Consensus 39 ~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~---------~l~~~~~~vr~~ 109 (852)
T 4fdd_A 39 QLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN---------NIGDSSPLIRAT 109 (852)
T ss_dssp HHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT---------TTTCSSHHHHHH
T ss_pred HHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH---------HHcCCCHHHHHH
Confidence 455667776666666654 344556666666677766532 123444444433333322 134555556665
Q ss_pred hhHHHHHHHhcC-----hHHHHHHH--HhcCC---------------------------cchHHHHHHHHh---ccCChh
Q 002912 377 GTDILILFLNQD-----PNLLRSYV--VRQEG---------------------------IPLLGLLVKGMI---TDFGED 419 (867)
Q Consensus 377 atDILi~iiehd-----P~lvR~~i--~~qe~---------------------------~~Ll~~Li~~ll---~d~d~g 419 (867)
+++++..|+.++ |.++-..+ +..++ ...+..++..|+ .+.++.
T Consensus 110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 189 (852)
T 4fdd_A 110 VGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189 (852)
T ss_dssp HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHH
Confidence 555555555443 22221110 00000 011223333322 466777
Q ss_pred hHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHH
Q 002912 420 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 499 (867)
Q Consensus 420 lk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv 499 (867)
++...+.+|..++.... . . +...++.++..|+..... ..+.+-...|+.|.-++
T Consensus 190 vR~~A~~aL~~~~~~~~--~----~-----~~~~~~~~l~~l~~~~~d---------------~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRT--Q----A-----LMLHIDSFIENLFALAGD---------------EEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHHHHHHHHHTTTTTTC--H----H-----HHTSHHHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--H----H-----HHHHHHHHHHHHHHHcCC---------------CCHHHHHHHHHHHHHHH
Confidence 77777777766654311 0 1 112233344444432100 12344556777777777
Q ss_pred hhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 500 LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 500 ~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
..++..++.|+ +.++.-++.++...+.-++..|+.|+.++...
T Consensus 244 ~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 244 EVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 77766666553 35777788888888889999999999987654
No 36
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=94.76 E-value=0.12 Score=51.57 Aligned_cols=99 Identities=14% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCC--CCcee--ccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccc
Q 002912 10 NANPMQVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 85 (867)
Q Consensus 10 ~~~~VKVY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 85 (867)
.+.+++||.-++. ..|.- .|.|.|+..+ +.....+- |.+-.+...+++..|.++-.|.+.-.+.-.|.+...+.
T Consensus 12 ~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~-d~~rnsyR-Ivg~~d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~~~ 89 (168)
T 1i2h_A 12 FSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNVYR-IISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANT 89 (168)
T ss_dssp EEEEEEEEEECTTSSCCSEESCSSCEEEEEEE-ETTTTEEE-EEEEETTEEEEEEECCTTCCEEEEETTEEEEEETTTTE
T ss_pred EEEEEEEEEECCCCCCceeecCCCCeEEEEEE-cCCCCEEE-EEEccCCEEEEecEecCCcEEeeCCcccceeecCCCcE
Confidence 4567889999764 37999 5555444433 33333333 33445888999999999999999999999999987668
Q ss_pred cccccccCccchhHHHHHHHHHhhc
Q 002912 86 ELALSFQEPTGCSYIWDNICNVQRN 110 (867)
Q Consensus 86 DlALSFQE~~GC~~IWe~I~~VQ~~ 110 (867)
=++|.||.++-+...-+.|..++..
T Consensus 90 v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 90 VYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999998887777666543
No 37
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.30 E-value=1.4 Score=48.54 Aligned_cols=184 Identities=11% Similarity=0.119 Sum_probs=126.1
Q ss_pred HHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 353 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 353 Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
.+..|.++.+-..|+++++.+|..|+..|..+..+++. |..++.. .-.+..|++.|-...++.++.....+|+.|-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~--~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRS--PQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhC--cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887764 3334332 1245667777766668888888888998874
Q ss_pred CCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHh
Q 002912 433 DSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL 511 (867)
Q Consensus 433 Dp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il 511 (867)
... +....+.+ ..++.|++-|.. ..+.+....+..|..+...+.. .+..+.
T Consensus 89 ~~~--------~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~i~ 140 (529)
T 1jdh_A 89 HHR--------EGLLAIFKSGGIPALVKMLGS-------------------PVDSVLFYAITTLHNLLLHQEG-AKMAVR 140 (529)
T ss_dssp TSH--------HHHHHHHHTTHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred cCc--------hhHHHHHHcCCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHHhcCCcc-hHHHHH
Confidence 321 12222333 345555554321 1234556677777777666543 356677
Q ss_pred hchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHh
Q 002912 512 LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN 569 (867)
Q Consensus 512 ~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~n 569 (867)
..+.+..++.++++.+.-++-.|.+.++.+.. .++-....+++.+.+.+++.++...
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 78899999999998887777788888886554 4455677888899999999988654
No 38
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.93 E-value=0.25 Score=46.98 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCCeEEEEeCC-CCCceeccceEE---EEEee----CCC-cceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCC
Q 002912 11 ANPMQVYRLND-DGKWDDQGTGHV---TVDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDP 81 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GTG~~---s~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~ 81 (867)
+.++.||.-++ .+.|.-.|.|-+ ++-++ +.. ....|+.+.-.+...+++..|.++-.|.+---+.-.|.+.
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~ 96 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVD 96 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECS
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcC
Confidence 45667898854 567999998863 33333 222 3344555666688999999999999999999999999999
Q ss_pred CccccccccccCccchhHHHHHHHHH
Q 002912 82 EYSTELALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 82 ~~g~DlALSFQE~~GC~~IWe~I~~V 107 (867)
+ .=++|.|+..+-+....+.+.+.
T Consensus 97 ~--~~~GLnF~se~eA~~F~~~v~~a 120 (126)
T 2jp2_A 97 N--RKFGLTFQSPADARAFDRGVRKA 120 (126)
T ss_dssp S--SEEEEEESSHHHHHHHHHHHHHH
T ss_pred C--EEEEEecCCHHHHHHHHHHHHHH
Confidence 6 44999999999998877776554
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.75 E-value=4.4 Score=43.44 Aligned_cols=210 Identities=8% Similarity=0.073 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHh------------hhccChHhHHHHHHHHHh----------------
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKSLQMVQQLRLFRDLMN---------------- 355 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~l------------sK~LQ~~~R~~lf~~Lv~---------------- 355 (867)
+.|+..|+.++.+.+.+..-|.-+...|+.+..- -..+....|..+-..|+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i 113 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHH
Confidence 5677777777776655566676667677776521 123444444433322211
Q ss_pred -------------cCcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccC-Ch
Q 002912 356 -------------EGIFDIVTDALQSQ--DKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDF-GE 418 (867)
Q Consensus 356 -------------~GLf~vi~~~L~~~--d~~ir~~atDILi~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~-d~ 418 (867)
.++++.+-..+.++ +..+|..|..+|..+.+.- |..+..++ ..++..++..|-.+. ++
T Consensus 114 ~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-----NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-----HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-----HHHHHHHHHHhCCCCCCH
Confidence 13445555555555 5566666666666655432 32211111 125555555443332 67
Q ss_pred hhHHHHHHHHHHhcCCCCCCch-hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 002912 419 DMHCQFLEILRSLLDSYTLSGA-QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 497 (867)
Q Consensus 419 glk~Ql~eaLk~LLDp~~m~~~-e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 497 (867)
.++.....++..++.- .... ....+. . .++..+..... .....+-..+|+.|.-
T Consensus 189 ~vr~~a~~~l~~~~~~--~~~~~~~~~~~-----~---~l~~~l~~~~~---------------~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 189 NVKLAATNALLNSLEF--TKANFDKESER-----H---FIMQVVCEATQ---------------CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHTSHHHH-----H---HHHHHHHHHTT---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhHHH-----H---HHHHHHHHhcC---------------CCCHHHHHHHHHHHHH
Confidence 7887777777776632 1000 000111 1 12222222110 0123455667888888
Q ss_pred HHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 498 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 498 cv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
++..+...++.|+-. .++.-++..++..+.-++..|+.|+.++...
T Consensus 244 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 888887666665433 7777777778888888999999999887654
No 40
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.61 E-value=0.48 Score=56.05 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=119.5
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 002912 351 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 430 (867)
Q Consensus 351 ~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 430 (867)
.++.+..++++|+. |+++|+..|..|+-.|..+++ ||++.+- +.++. .+..++..+++|.+..++.+.+.+||.
T Consensus 29 ~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~~~l-~~~~~---~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 29 AKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKCRKL-LLREQ---VVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHHHHH-HHHTT---HHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHHHHH-HHHcC---CHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45667789999987 899999999999999999995 8986554 44432 555677788899999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccc----CCcHHHHHHHHHHHHHHHhhcCch
Q 002912 431 LLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVE----STKPEILSNICELLCFCVLHHPYR 505 (867)
Q Consensus 431 LLDp~~m~~~e~d~FL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~----~~~~~ll~~l~ELL~Fcv~~H~yr 505 (867)
|---+ ..++..+.|.+. +.-|..-|-.... ............. ..-..+..+++-+|... -+++-.
T Consensus 103 L~~~~------g~d~~~~l~~~~il~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L-~e~s~~ 173 (684)
T 4gmo_A 103 LAQEE------EADFCVHLYRLDVLTAIEHAAKAVLE--TLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLL-ALARDE 173 (684)
T ss_dssp HHHHS------CHHHHHHHHHTTHHHHHHHHHHHHHH--HHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHH-HHHCHH
T ss_pred HHhhc------CchHHHHHHHcChHHHHHHHHHhhHH--HHhhhccccccccHHHHHHHHHHHHHHHHHHHHH-HhCCHH
Confidence 85222 224556666553 3333322211000 0000000000000 00011234555555443 345555
Q ss_pred hhhhHhhchHHHHHHHHhhccch---hhHHHHHHHHHHHhccchhHHHHHHHhhC
Q 002912 506 IKCNFLLNNVVDKVLLLTRRREK---YLVVAAVRFVRTILSRHDEHLINHFVKNN 557 (867)
Q Consensus 506 iK~~il~~nll~rVl~Ll~~~~K---~L~LaAlRF~R~iI~lkDefy~ryiIk~n 557 (867)
+...|...+.+..++.++...++ -++.+|+.|+.++..-+++|. +.+..+.
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 66677788888888877654443 488999999999988888764 4555443
No 41
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.59 E-value=0.86 Score=48.04 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=103.8
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 002912 355 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 434 (867)
Q Consensus 355 ~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 434 (867)
..+.|.++...|.+.|..++..+.=+|=-++..=|..+|.-+++. +|..+|+.+ .+.|..+..-.+.+|++||..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~----~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER----HLDVFINAL-SQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH----HHHHHHHTC-CSTTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH----HHHHHHHHH-hccchhHHHHHHHHHHHHHcC
Confidence 344667777888888888888777777666666555555544432 677777755 788999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhch
Q 002912 435 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 514 (867)
Q Consensus 435 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 514 (867)
.+++.. =|.+.++.|..-+.. ...-+..++.|.|.=. |---....
T Consensus 106 vpL~~~--------~y~Kl~~aL~dlik~-------------------~~~il~~eaae~Lgkl--------kv~~~~~~ 150 (265)
T 3b2a_A 106 VPMGSK--------TFLKAAKTLVSLLES-------------------PDDMMRIETIDVLSKL--------QPLEDSKL 150 (265)
T ss_dssp CCBCHH--------HHHHHHHHHHHHTTS-------------------CCHHHHHHHHHHHHHC--------CBSCCCHH
T ss_pred CCCCHH--------HHHHHHHHHHHHhcC-------------------CCchHHHHHHHHhCcC--------CcccchHH
Confidence 887532 144444444443321 1223445666666544 11222345
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 515 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 515 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
+...+.+|+.|++..++.+|+|++-.+-+.-
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 7778889999999999999999999998754
No 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.48 E-value=11 Score=45.09 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=147.0
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
..++.|...+++++ ..-|+.++..|..+|.-..+ .-+.+++.|.++.+-..|.+.+..++..+++.|..+
T Consensus 234 g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~--------~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 234 GGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEG--------AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHSTT--------HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCChh--------hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46888888888763 56788899888888765321 112455789999999999999988999999998877
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002912 385 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 464 (867)
Q Consensus 385 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 464 (867)
.-.++.. |..+.... -+..|++.|-......++.....+|+.|--.. ..+..++ +. -.+.+|...
T Consensus 304 a~~~~e~-~~~i~~~~---~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~----~~~~~i~----~~---g~l~~Ll~l 368 (780)
T 2z6g_A 304 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS----SNKPAIV----EA---GGMQALGLH 368 (780)
T ss_dssp HTTCHHH-HHHHHTTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST----THHHHHH----HT---THHHHHGGG
T ss_pred hcCChHH-HHHHHHcC---CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh----HHHHHHH----Hh---chHHHHHHH
Confidence 6555553 44444432 35566776655545556666677777775321 1122221 11 123344332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 465 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
... ....+....+..|.-++..... ......++..++.++++.+.-++..|++.+..+..-
T Consensus 369 L~~---------------~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 369 LTD---------------PSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp TTC---------------SCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HcC---------------CchHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 110 1123334445555544443321 223356888999999999999999999999998655
Q ss_pred chhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHH
Q 002912 545 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 581 (867)
Q Consensus 545 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~L 581 (867)
.+ -....+++.+.+.+++.++...+....+...|+.
T Consensus 430 ~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 430 NY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp CH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 44 4567888999999999999876554344444433
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.45 E-value=5.2 Score=47.89 Aligned_cols=212 Identities=12% Similarity=0.152 Sum_probs=132.4
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+..+...|.+++ .+.|+.++.+|+- ..+ ..+..|.++.|-..|.+.+..+|..|+..|..+..
T Consensus 117 i~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 117 HPTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ---------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 555666666654 3455666655541 122 23447889999889999999999999999999888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 465 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~ 465 (867)
+++. +..+.. ..-.+..|++.|-.+.++.++...+.+|+.|--.. .....+.+ ..++.|+.-|..
T Consensus 180 ~~~~--~~~i~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--------~~~~~i~~~g~I~~Lv~lL~~-- 245 (780)
T 2z6g_A 180 KEAS--RHAIMR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--------EGLLAIFKSGGIPALVNMLGS-- 245 (780)
T ss_dssp SHHH--HHHHTT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChh--HHHHHh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--------hhHHHHHHcCCHHHHHHHHcC--
Confidence 7654 222322 12367778888876678889888888888864221 11222222 345555543321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccc
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 545 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lk 545 (867)
..+.+....+..|..+...+. ..+..+....++..++.++++.+.-++-.|+.+++.+. ..
T Consensus 246 -----------------~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La-~~ 306 (780)
T 2z6g_A 246 -----------------PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA-YG 306 (780)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-cC
Confidence 023444556666666666543 45667777889999999998877666667777887544 44
Q ss_pred hhHHHHHHHhhCcHHHHHHHHHH
Q 002912 546 DEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 546 Defy~ryiIk~nLf~PIl~~f~~ 568 (867)
++-....++..+.+.+++.++..
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCHHHHHHHHhc
Confidence 44456677888999999987753
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.04 E-value=2.9 Score=44.87 Aligned_cols=210 Identities=13% Similarity=0.109 Sum_probs=119.2
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK-~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
.+++-+...+.+++.+..-|..++.-|..++.+.+ +.... .+..+ +++++...+.+.+..+|..++.+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 35556666677665456677778877766554432 11111 12222 46666677788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCC-------------CCc-hhhhHHHHHH
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-------------LSG-AQRDTIIEIF 449 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-------------m~~-~e~d~FL~~F 449 (867)
+++..|..++.|+.+ .++..++..+ .+.++.++.+.++.+..+.+... ... ...-.++..+
T Consensus 244 l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP----ALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHCGGGCTTTTTT----THHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 999988776655421 4666655544 67888999888888877764320 000 0011233333
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchh
Q 002912 450 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 529 (867)
Q Consensus 450 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 529 (867)
....++.|+.-+... .+. .. .....++ ...++.|..++..-. + .+ ...++..+..++...+-.
T Consensus 319 ~~~l~p~l~~~l~~~--d~d--~~-~~~~~~r-------~~a~~~L~~l~~~~~---~-~~-~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQ--DEN--DD-DDDWNPC-------KAAGVCLMLLATCCE---D-DI-VPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp HHHHHHHHHHHTTCC--CSS--CC-TTCCSHH-------HHHHHHHHHHHHHTT---T-TH-HHHHHHHHHHHTTCSSHH
T ss_pred hhhccHHHHHHHHhc--ccc--cc-cccchHH-------HHHHHHHHHHHHhcc---H-HH-HHHHHHHHHHHhcCCChH
Confidence 344444444333211 000 00 0111122 122333333333322 1 12 235667777788888888
Q ss_pred hHHHHHHHHHHHhcc
Q 002912 530 LVVAAVRFVRTILSR 544 (867)
Q Consensus 530 L~LaAlRF~R~iI~l 544 (867)
.+-+|+.++..+..-
T Consensus 382 ~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 382 YRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 45
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=92.87 E-value=0.37 Score=45.27 Aligned_cols=97 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCeEEEEeCC-CCCceeccceEEE---EEee----CCC-cceeEEEEecCCCcceEEeecCCCcccccccCeEEEecC
Q 002912 10 NANPMQVYRLND-DGKWDDQGTGHVT---VDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 80 (867)
Q Consensus 10 ~~~~VKVY~L~~-~~~W~D~GTG~~s---~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte 80 (867)
.+.++.||.-++ .+.|.-.|.|-++ +-+. +.. ....|+.+.-.+...++++.|.++-.|.+.-.+.-.|.+
T Consensus 7 ~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~ 86 (118)
T 1xod_A 7 ARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRI 86 (118)
T ss_dssp EEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEE
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEe
Confidence 345677888754 6799999988643 3333 122 234455566568889999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHh
Q 002912 81 PEYSTELALSFQEPTGCSYIWDNICNVQ 108 (867)
Q Consensus 81 ~~~g~DlALSFQE~~GC~~IWe~I~~VQ 108 (867)
.+ +=++|.|+..+-+....+.+.+.-
T Consensus 87 ~~--~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 87 GD--KKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp TT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 85 559999999999998877776654
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.85 E-value=5.5 Score=48.50 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh-------------hcc-------ChHhHHHHH----HHHHhcC
Q 002912 302 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSL-------QMVQQLRLF----RDLMNEG 357 (867)
Q Consensus 302 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-------------K~L-------Q~~~R~~lf----~~Lv~~G 357 (867)
.+..+++.|+..+++++. .-...+..-|..++.-. +.. .+-....+- +.+++.|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 418 EDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HCHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 356799999999986543 34555665555554411 100 111222233 5788999
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCC
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 437 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 437 (867)
.++.+-..|.++++.++..++-+|..|.. |+. .|..++++...+ .|+.+| .+.++..+.+...+|-.|.-..+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Gaip---~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~- 568 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGGVK---ALLRMA-LEGTEKGKRHATQALARIGITIN- 568 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTHHH---HHHHHH-HSSCHHHHHHHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCCHH---HHHHHH-ccCCHHHHHHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999984 555 688888875433 344444 34566677778888877652111
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHH
Q 002912 438 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVD 517 (867)
Q Consensus 438 ~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~ 517 (867)
++ ..|+.......+.||........ ........+--|+.+.... -..+..++....+.
T Consensus 569 --p~-----~~~~~~~~~~aIppLv~LL~~~~--------------~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~ 626 (810)
T 3now_A 569 --PE-----VSFSGQRSLDVIRPLLNLLQQDC--------------TALENFESLMALTNLASMN-ESVRQRIIKEQGVS 626 (810)
T ss_dssp --HH-----HHTTTHHHHHTHHHHHHTTSTTS--------------CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHH
T ss_pred --hh-----hhhcchhhhcHHHHHHHHhCCCC--------------cHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Confidence 00 11221111224556655421100 0001112344555555443 23455688889999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHH
Q 002912 518 KVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 568 (867)
Q Consensus 518 rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ 568 (867)
++..|+.+.+..++-+|++++.+++. .++...+++...+.+.+++.++..
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcC
Confidence 99999999999999999999999886 444444444236888888877643
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.77 E-value=4.6 Score=40.45 Aligned_cols=193 Identities=9% Similarity=0.142 Sum_probs=123.0
Q ss_pred HHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCcchhhhhhHHHHHHHhcC
Q 002912 310 LFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQD 388 (867)
Q Consensus 310 LF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~-~~d~~ir~~atDILi~iiehd 388 (867)
++..+.+ .+-..|+.++.-|..++.-...+.... |. .+++++...|. +.+..+|..|+..|..+...=
T Consensus 20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5555554 345688899988888877632222111 11 24566777884 999999999999998887432
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCc
Q 002912 389 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 468 (867)
Q Consensus 389 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~ 468 (867)
...+..|+ ..++..|++. +.|....++....++|+.++...+ ++..++.|+.-|..
T Consensus 89 ~~~~~~~~-----~~ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~----- 144 (242)
T 2qk2_A 89 AKRFSNYA-----SACVPSLLEK-FKEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSN----- 144 (242)
T ss_dssp GGGGHHHH-----HHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTC-----
T ss_pred hhhHHHHH-----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcC-----
Confidence 21222222 2255555654 367888999999999999976422 23334444332211
Q ss_pred ccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCch--hhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh-ccc
Q 002912 469 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR--IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL-SRH 545 (867)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr--iK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI-~lk 545 (867)
..+.+-..++.+|.-|+..|.-. ...++ ..++..+..++.-++.-++-+|..++-.+. ...
T Consensus 145 --------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 145 --------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp --------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 13345567788888888887522 23333 478888888998888889999999988854 234
Q ss_pred hhHHHHHH
Q 002912 546 DEHLINHF 553 (867)
Q Consensus 546 Defy~ryi 553 (867)
.+.+..|+
T Consensus 209 ~~~~~~~l 216 (242)
T 2qk2_A 209 DKAVTPLL 216 (242)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHHH
Confidence 55555554
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.69 E-value=10 Score=44.54 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=128.1
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
.++.-+...+.+++.+.+-|..++.-|..++... .++... .++ ..+++++..++.+.+..+|..+++.|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~----~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SER----HFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH----HHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH----HHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4555566667766545666777877777665432 222211 111 1256677777788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCC------------ch--hhhHHHHHH
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS------------GA--QRDTIIEIF 449 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~------------~~--e~d~FL~~F 449 (867)
++...|..+..++. ..++..++..+ .+.++.++.+.++.+..+.+..... .+ ....++.-+
T Consensus 244 l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 244 IMSLYYQYMETYMG----PALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHSGGGCHHHHT----TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHhHHHHHHHHH----HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 99999988877763 23666666654 5677888888888888776432100 00 001122222
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchh
Q 002912 450 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 529 (867)
Q Consensus 450 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 529 (867)
+ ..++.+++......... .......++......+..+++ +... .+ -..++..+...+...+-.
T Consensus 319 ~----~~ll~~ll~~l~~~~~d-~~~~~~~~r~~a~~~l~~l~~----~~~~-------~~-~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 319 L----QYLVPILTQTLTKQDEN-DDDDDWNPCKAAGVCLMLLAT----CCED-------DI-VPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp H----HHHHHHHHHHTTCCCSS-CCTTCCCHHHHHHHHHHHHHH----HHGG-------GG-HHHHHHHHHHHTTCSSHH
T ss_pred H----HHHhHHHHHHhhccccc-ccccccHHHHHHHHHHHHHHH----HCcH-------hh-HHHHHHHHHHHccCCChH
Confidence 3 33444443322111000 000111222111222233322 2221 11 235666667777778888
Q ss_pred hHHHHHHHHHHHhccch-hHHHHHHHhhCcHHHHHHHH
Q 002912 530 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 530 L~LaAlRF~R~iI~lkD-efy~ryiIk~nLf~PIl~~f 566 (867)
.+-+|++.+..+..--. +.+..|+ ..++..++..+
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 89999999998775433 4444554 33666666666
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.20 E-value=9.6 Score=44.63 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHh------------hhc-cChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKS-LQMVQQLRLFRDLMNEGIFDIVTDALQSQD 370 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~l------------sK~-LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d 370 (867)
+.|+.-|..++.+.+.+..-|.-+...|+.++.. -.. +....|..+-..| -.+|.+++
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~l---------l~~l~~~~ 108 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA---------LTALVSIE 108 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHH---------HHHHTCSS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHH---------HHHHCCCc
Confidence 7888888888887666666677767677765421 011 4444444433332 22467788
Q ss_pred cchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 002912 371 KKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 449 (867)
Q Consensus 371 ~~ir~~atDILi~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~F 449 (867)
..+|..++.+|..|..++ |. ..-..|+..|++.+-.+.++.++...+.+|..+++.-. ...+ .
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~--------~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~------~ 172 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH--------GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQSQ------A 172 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--------TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TTSS------T
T ss_pred hHHHHHHHHHHHHHHHhhCcc--------cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hhhh------H
Confidence 899999999998887765 31 11123666666655433377777777778877775311 0011 0
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchh
Q 002912 450 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 529 (867)
Q Consensus 450 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 529 (867)
...+++.++..+....... + ..+.+-...++.|+-|+..=...+......+.++.-+..++...+.-
T Consensus 173 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQST----E---------TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTT----C---------CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 1233444444443321000 0 01223334455555443210000000001122445555667777778
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 530 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 530 L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
++.+|++++-.++....+++..|+.+ .++..++..+ .+.+.-+-.++++++..+
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~---~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM---KSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 88999999999887766666555543 4454444333 234445556666666544
No 50
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=92.18 E-value=0.66 Score=46.26 Aligned_cols=96 Identities=11% Similarity=0.252 Sum_probs=77.1
Q ss_pred CeEEEEeCCCCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccccccccc
Q 002912 13 PMQVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQ 92 (867)
Q Consensus 13 ~VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQ 92 (867)
-|+||.-..++.|.-.+||-+...-.-......|=|.+-.++..+.+..|-.+=.|++......+|.+. +.=++|+|.
T Consensus 64 VaqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFa 141 (169)
T 2ifs_A 64 VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFA 141 (169)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSSCCCBCCCSSEEEEECS--SSEEEEECS
T ss_pred EEEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEeecC--CcEEEEeeC
Confidence 367999866679999999987654322234566778888888899999999999999999999999764 467999999
Q ss_pred CccchhHHHHHHHHHhhc
Q 002912 93 EPTGCSYIWDNICNVQRN 110 (867)
Q Consensus 93 E~~GC~~IWe~I~~VQ~~ 110 (867)
+.+-+......|++-..+
T Consensus 142 de~EA~~F~~~V~~~l~~ 159 (169)
T 2ifs_A 142 NEEEAKKFRKAVTDLLGR 159 (169)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999988888776543
No 51
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=92.13 E-value=0.67 Score=45.45 Aligned_cols=96 Identities=11% Similarity=0.252 Sum_probs=77.1
Q ss_pred CeEEEEeCCCCCceeccceEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccccccccc
Q 002912 13 PMQVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQ 92 (867)
Q Consensus 13 ~VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQ 92 (867)
-|+||.-..++.|.-.++|-+...-.-.....+|=+.+-.++..+.+..|-.+=.|++......+|... +.=++|+|.
T Consensus 47 VaqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFa 124 (152)
T 1mke_A 47 VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFA 124 (152)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECS--SSEEEEEES
T ss_pred eEEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEEecC--CcEEEEeeC
Confidence 467999866679999999987654322234566778888888899999999999999999999999764 467999999
Q ss_pred CccchhHHHHHHHHHhhc
Q 002912 93 EPTGCSYIWDNICNVQRN 110 (867)
Q Consensus 93 E~~GC~~IWe~I~~VQ~~ 110 (867)
+.+-+..+...|.+-..+
T Consensus 125 de~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 125 NEEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999988888776543
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.88 E-value=23 Score=41.13 Aligned_cols=210 Identities=12% Similarity=0.128 Sum_probs=117.8
Q ss_pred CcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCC
Q 002912 357 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 436 (867)
Q Consensus 357 GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 436 (867)
.+++.|..+|.+.++.+|.+|+--+..+...+|.+++.+ +..| ..++.|.|++++.....+|..+....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~---------~~~l-~~lL~D~d~~V~~~Al~~L~~i~~~~- 210 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF---------LPAT-KNLLNEKNHGVLHTSVVLLTEMCERS- 210 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG---------GGGT-TTSTTCCCHHHHHHHHHHHHHHCCSH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH---------HHHH-HHHhCCCCHhHHHHHHHHHHHHHHhC-
Confidence 457788888999999999999999999999999877642 2222 33568999999988888888875321
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhcCchhhh---h---
Q 002912 437 LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKC---N--- 509 (867)
Q Consensus 437 m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~H~yriK~---~--- 509 (867)
+ +. .-.|.++++.|++-|...+.... .+...+. ...+++...++++|....+..+--.+. +
T Consensus 211 ---~---~~-~~~~~~~v~~l~~~L~~~~~~~~-----~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~ 278 (618)
T 1w63_A 211 ---P---DM-LAHFRKLVPQLVRILKNLIMSGY-----SPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQ 278 (618)
T ss_dssp ---H---HH-HHHHHTTHHHHHHHHHHHHHSCC-----CTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH
T ss_pred ---h---HH-HHHHHHHHHHHHHHHHHHHcCCC-----CccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1 12 23456777877776654210000 0000010 124566677777777766543211000 0
Q ss_pred Hh------------------------------hchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHH-----
Q 002912 510 FL------------------------------LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFV----- 554 (867)
Q Consensus 510 il------------------------------~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiI----- 554 (867)
++ ....+..+..++.+++.-++.+||+-+..++..+-+.+.+|..
T Consensus 279 l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~ 358 (618)
T 1w63_A 279 VATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC 358 (618)
T ss_dssp HHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHG
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 00 0012334445566677777777777777776554333222211
Q ss_pred -hh-C--cHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 002912 555 -KN-N--LLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE 590 (867)
Q Consensus 555 -k~-n--Lf~PIl~~f~~ng~R~NLlnSA~LElfefIr~e 590 (867)
.. + +=.--++++..-.+..|. ..-+-||.+|+...
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~~~l~~~ 397 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNI-RGMMKELLYFLDSC 397 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHHHHHHHC
T ss_pred ccCCChhHHHHHHHHHHHHcccccH-HHHHHHHHHHHHhC
Confidence 00 0 000113344444555663 45566677776543
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.57 E-value=14 Score=42.96 Aligned_cols=175 Identities=14% Similarity=0.235 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCC
Q 002912 359 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 438 (867)
Q Consensus 359 f~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 438 (867)
.+.+...|.+.|+.+|..|.+.|..++.++|..+..+. .. +-..+.+.|..++....++|..|.+..|..
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~---------~~-i~~~l~d~d~~Ir~~alelL~~l~~~~nv~ 384 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR---------ST-IVDCLKDLDVSIKRRAMELSFALVNGNNIR 384 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH---------HH-HHHGGGSSCHHHHHHHHHHHHHHCCSSSTH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH---------HH-HHHHccCCChhHHHHHHHHHHHHcccccHH
Confidence 34444557788888888888888888888887665432 12 223457889999999999999999887752
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHH
Q 002912 439 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 518 (867)
Q Consensus 439 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~r 518 (867)
. .+..|..-+.+. ..++-..++.-++-|...++--... .+..
T Consensus 385 ~-------------iv~eL~~~l~~~-------------------d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ 426 (618)
T 1w63_A 385 G-------------MMKELLYFLDSC-------------------EPEFKADCASGIFLAAEKYAPSKRW------HIDT 426 (618)
T ss_dssp H-------------HHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHSSCCCHHH------HHHH
T ss_pred H-------------HHHHHHHHHHhC-------------------CHHHHHHHHHHHHHHHHHhCccHHH------HHHH
Confidence 1 112222222210 1112223344444444433222111 2344
Q ss_pred HHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh----hChHH
Q 002912 519 VLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK----ENLKS 594 (867)
Q Consensus 519 Vl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~----eNik~ 594 (867)
++.+++....+.+-.++..+|.++.... ++-.+++-.|++++.. +.+..
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p---------------------------~l~~~~v~~L~~~l~~~~~~~~~~~ 479 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSV---------------------------EMHAYTVQRLYKAILGDYSQQPLVQ 479 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSC---------------------------STHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCh---------------------------hHHHHHHHHHHHHHhcccccHHHHH
Confidence 5555554445555455555565554322 2444555556666654 44455
Q ss_pred HHHHHHHhhHhhcc
Q 002912 595 LVKYIVDSFWNQLV 608 (867)
Q Consensus 595 Li~hlve~y~~~l~ 608 (867)
.+.|++-.|++.+.
T Consensus 480 ~~~wilGEy~~~i~ 493 (618)
T 1w63_A 480 VAAWCIGEYGDLLV 493 (618)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHhc
Confidence 67889999988764
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.20 E-value=13 Score=39.40 Aligned_cols=183 Identities=10% Similarity=0.119 Sum_probs=120.1
Q ss_pred hhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh
Q 002912 373 LVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK 452 (867)
Q Consensus 373 ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~ 452 (867)
-|..|.++|..+++... .-+.+ .+..+ +..|+..++...++.++.+.+.+|..+..... ..++.+++. .
T Consensus 56 ~k~~Al~~L~~lv~~~d-na~~~-~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---~~~~~vv~~---g 124 (296)
T 1xqr_A 56 EREGALELLADLCENMD-NAADF-CQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---AIQEQVLGL---G 124 (296)
T ss_dssp HHHHHHHHHHHHHTSHH-HHHHH-HHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHhChh-hHHHH-HHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHC---C
Confidence 46778899999988544 33332 33332 23456645677899999999999998864211 123333321 4
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHH
Q 002912 453 HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVV 532 (867)
Q Consensus 453 ~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~L 532 (867)
.++.|++-|... + ...+....+--|+-+++++...... |...+.+.-++.++++.+.-++.
T Consensus 125 ~l~~Ll~LL~~~-~-----------------~~~v~~~A~~ALsnl~~~~~~~~~~-~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 125 ALRKLLRLLDRD-A-----------------CDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHHHHHHHC-S-----------------CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHccC-C-----------------CHHHHHHHHHHHHHHHcCCcHHHHH-HHHCCCHHHHHHHHcCCCHHHHH
Confidence 567777655431 0 2234456667777777777665444 44567888888999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002912 533 AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 533 aAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 589 (867)
.|+..+..+..-.+ -..+++++.+.+.|++.++... +.=+--.++..+..|-+
T Consensus 186 ~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 186 KSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHh
Confidence 99999999876544 4788999999999999988533 33333444444444443
No 55
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.14 E-value=7 Score=47.59 Aligned_cols=200 Identities=8% Similarity=0.057 Sum_probs=121.8
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
.++-|...+.+ +.+...+.+++.=|..++..+ .. .=..+++.|.++.|...|.+.+..++..|++.|..++
T Consensus 581 aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~----d~----~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 581 VIRPLLNLLQQ-DCTALENFESLMALTNLASMN----ES----VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp THHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45556666653 223334445554444333321 11 2223677898999999999999999999999998888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 465 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 465 (867)
-++. ....++ ++.--+..|+..+ ...+.+++....-+|..|
T Consensus 652 ~~~~-~~~~~v---~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanL---------------------------------- 692 (810)
T 3now_A 652 MSED-VIKMFE---GNNDRVKFLALLC-EDEDEETATACAGALAII---------------------------------- 692 (810)
T ss_dssp TSHH-HHHHHH---SSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHH----------------------------------
T ss_pred CChH-HHHHHH---hccCcHHHHHHHh-cCCCHHHHHHHHHHHHHH----------------------------------
Confidence 7543 333332 1222333333322 233444443333332222
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhh-chHHHHHHHHhhccchhhHHHHHHHHHHHhcc
Q 002912 466 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL-NNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 544 (867)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~-~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 544 (867)
...+.--+ ..++. .+.+..+..|+.+.+--++-.|+..+.+++.-
T Consensus 693 ---------------------------------t~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 693 ---------------------------------TSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ---------------------------------HHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------hCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 11111112 23444 67788888888888888899999999999875
Q ss_pred chhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002912 545 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 588 (867)
Q Consensus 545 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 588 (867)
.++ +.++|++.+.+.|+++++.....+++=+--.+++-++-|-
T Consensus 739 s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 739 GEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp CHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 554 6899999999999999887654566655555555555543
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.95 E-value=29 Score=40.58 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=114.4
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcC----hHHHHHHHHhcCCcchHHHHHHHHhc-cCChhhHHHHHHHHHHhc
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILILFLNQD----PNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi~iiehd----P~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~eaLk~LL 432 (867)
+++.+-.+|.++ +.+|..++..|..+++.- +..+..|+ ..++..|++.+-. +.+..++..+.++|..|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-----PALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 344555556665 778888888887776642 22232322 1255566665543 444788888999998887
Q ss_pred CCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhh
Q 002912 433 DSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 512 (867)
Q Consensus 433 Dp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~ 512 (867)
..... + ..-++...++.+++-|....+.+...... ..+.....+...+++.|..+++.-.-.+..|+
T Consensus 529 ~~~~~---~----~~~~~~~l~~~l~~~l~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-- 595 (861)
T 2bpt_A 529 EYATD---T----VAETSASISTFVMDKLGQTMSVDENQLTL----EDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-- 595 (861)
T ss_dssp HHCCG---G----GHHHHHHHHHHHHHHHHHHTTSCGGGCCH----HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--
T ss_pred HHcch---h----hHHHHHHHHHHHHHHHHHHHhhhcccCCh----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--
Confidence 54221 1 12234445555555554321110000000 00011234556788888888877655444433
Q ss_pred chHHHHHHHHhhccch-hhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 513 NNVVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 513 ~nll~rVl~Ll~~~~K-~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
..++..++.++...+. .++-.|+.++.+++..-.+-+..|+-+ ++.+++..+ +.+.++ +-.++++++..|
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l--~~~~~~-vr~~a~~~l~~l 666 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKAL--NQVDSP-VSITAVGFIADI 666 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHH--HCTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHh--ccccHH-HHHHHHHHHHHH
Confidence 4688888888887766 788889998888765433334455543 566666666 223333 444455555444
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.66 E-value=17 Score=42.55 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh------------hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCc
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS------------KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDK 371 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls------------K~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~ 371 (867)
+.|+.-|+..+.+.+.+...|.-+...|+.++... ..+.+..|..+-.. +-.+|.+++.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~---------ll~~l~~~~~ 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNY---------VLHTLGTETY 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHH---------HHHHTTTCCS
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHH---------HHHHhCCCcH
Confidence 67888888888876666677777777888765210 12333333332222 2234677888
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 002912 372 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF--GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 449 (867)
Q Consensus 372 ~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~--d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~F 449 (867)
.+ ..++.++..|..++- ....-..++..|+..+ .+. ++.++...+.+|..++..-. + +.
T Consensus 105 ~~-~~~~~~l~~i~~~~~-------~~~~w~~ll~~l~~~l-~~~~~~~~~r~~al~~l~~l~~~~~---~--~~----- 165 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEI-------PVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDID---P--EQ----- 165 (876)
T ss_dssp SS-CHHHHHHHHHHHHHG-------GGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSC---H--HH-----
T ss_pred HH-HHHHHHHHHHHHhhC-------cccccHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHhcC---H--hh-----
Confidence 88 888899888876541 1112234667777655 444 77787777788877764211 1 11
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchh
Q 002912 450 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 529 (867)
Q Consensus 450 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 529 (867)
+..+++.++..+....... . + ...+-...++.|+-++..-.-.+......+.++.-+..++...+.-
T Consensus 166 ~~~~~~~ll~~l~~~l~~~----~--~-------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 232 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKE----E--P-------SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTT----C--S-------CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHhHHHHHHHHHHHhhcCC----C--C-------CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666666655421100 0 0 1122233444444444321111111111223555556666666777
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 530 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 530 L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
++.+|++++-.++...-.++..|+. ..++..++..+ .+.+--+-.++++++..+
T Consensus 233 vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~---~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 233 VRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAM---KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHh---cCCchHHHHHHHHHHHHH
Confidence 8899999999999877666666653 46777766654 233334445555555444
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=90.44 E-value=12 Score=43.71 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=50.7
Q ss_pred cHHHHHHHH--cCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 358 IFDIVTDAL--QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 358 Lf~vi~~~L--~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
+.+.|..+| .+.++.||..|+--+..+...+|.+++ ...+++.|.+ ++.|.|+|++....-+|..+.
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-------~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-------MGDWTSRVVH-LLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-------CCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-------chhHHHHHHH-HhCCCCccHHHHHHHHHHHHH
Confidence 456667778 888999999999999999999998764 1246666665 558999999877666665553
No 59
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=90.30 E-value=7.6 Score=42.32 Aligned_cols=211 Identities=12% Similarity=0.058 Sum_probs=134.9
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHHH
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 397 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh-dP~lvR~~i~ 397 (867)
.+-++.+..-|..+|.-. .. .+..+ ..|.++.+-..|.+++..++..++-.|..+... ++. .|..+.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~----~~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~ 167 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD----VA-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 167 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC----HH-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----HH-----HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHH
Confidence 455777777777655321 11 23333 468899999999999999999999999988876 444 566665
Q ss_pred hcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 002912 398 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 477 (867)
Q Consensus 398 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~ 477 (867)
+.. -+..|++.|....+.+++.....+|..|-- .....|..+.. -...++.|++-|....+.
T Consensus 168 ~~G---~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~---~~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~---------- 229 (354)
T 3nmw_A 168 EVG---SVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKADICA--VDGALAFLVGTLTYRSQT---------- 229 (354)
T ss_dssp HTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHT---TCHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HCC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHHc---cChhhhHHHHH--hcCcHHHHHHHhccCCCc----------
Confidence 433 345667777777788888888888887732 01112222221 235667777766432110
Q ss_pred CcccCCcHHHHHHHHHHHHHHH----hhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHH
Q 002912 478 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 553 (867)
Q Consensus 478 ~~~~~~~~~ll~~l~ELL~Fcv----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryi 553 (867)
...++....+=.|..+. .... .+..+...+.+..++.|+++...-++-.|++.++++... +.-....|
T Consensus 230 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i 301 (354)
T 3nmw_A 230 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL 301 (354)
T ss_dssp -----SCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHhhccCCHH--HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 00012222222222222 1222 345678888999999999988888899999999998754 44467899
Q ss_pred HhhCcHHHHHHHHH
Q 002912 554 VKNNLLKPIVDAFV 567 (867)
Q Consensus 554 Ik~nLf~PIl~~f~ 567 (867)
++.+.+.|+++++.
T Consensus 302 ~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 302 WDMGAVSMLKNLIH 315 (354)
T ss_dssp HHTTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998764
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=90.20 E-value=7.3 Score=44.18 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=135.1
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHHH
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 397 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh-dP~lvR~~i~ 397 (867)
..-++.+..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..++-.|..+... ++. .|..+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~ 283 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 283 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----ccc-----HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 445777787777766421 112 3333 468889999999999999999999999888775 454 466665
Q ss_pred hcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 002912 398 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 477 (867)
Q Consensus 398 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~ 477 (867)
+.. -+..|++.|....+.+++.....+|..|-- .....+..+.. -...++.|++-|....+.
T Consensus 284 ~~G---aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~---~~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~---------- 345 (458)
T 3nmz_A 284 EVG---SVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKADICA--VDGALAFLVGTLTYRSQT---------- 345 (458)
T ss_dssp HTT---HHHHHHHHHTTCCSHHHHHHHHHHHHHHHH---HCHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HcC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHH--hcCcHHHHHHHhcCCCCc----------
Confidence 433 345677777777788888877777777731 00012222221 134566666665331100
Q ss_pred CcccCCcHHHHHHHHHHHHHHH----hhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHH
Q 002912 478 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 553 (867)
Q Consensus 478 ~~~~~~~~~ll~~l~ELL~Fcv----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryi 553 (867)
...++....+=.|.-+. .... .+..+...+.+..++.|+++...-++-.|++.++++.... .-...+|
T Consensus 346 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i 417 (458)
T 3nmz_A 346 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEAL 417 (458)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-HHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHhcccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 00012222222222222 2222 2456778889999999999888889999999999987544 4467899
Q ss_pred HhhCcHHHHHHHHH
Q 002912 554 VKNNLLKPIVDAFV 567 (867)
Q Consensus 554 Ik~nLf~PIl~~f~ 567 (867)
++.+.+.|+++++.
T Consensus 418 ~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 418 WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998774
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.88 E-value=13 Score=44.95 Aligned_cols=263 Identities=10% Similarity=0.140 Sum_probs=148.1
Q ss_pred HHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccC-----------------hH--------h---HHHH
Q 002912 298 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQ-----------------MV--------Q---QLRL 349 (867)
Q Consensus 298 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ-----------------~~--------~---R~~l 349 (867)
..|.+|..||..|+..++++..+ .--.+++..|..|++...+++ |. . ...-
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 34666788999999999852211 123344444444443222211 10 0 1112
Q ss_pred --HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChh--hHHHHH
Q 002912 350 --FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED--MHCQFL 425 (867)
Q Consensus 350 --f~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g--lk~Ql~ 425 (867)
-+.+++.|..+.+-..+++.++.+|..++-+|..+... +. .|..+++|.+ +..|+..+....+.+ .+....
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~-~R~~lvqqGa---l~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN-FIPQLAQQGA---VKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHTTH---HHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCC---HHHHHHHHhcCCCcchHHHHHHH
Confidence 24577999999999999999999999999999998744 55 4777887643 223333333332221 344444
Q ss_pred HHHHHhc-------------------------CC--CCCC--------ch--hh------------------hHHHHHHH
Q 002912 426 EILRSLL-------------------------DS--YTLS--------GA--QR------------------DTIIEIFY 450 (867)
Q Consensus 426 eaLk~LL-------------------------Dp--~~m~--------~~--e~------------------d~FL~~FY 450 (867)
.||-.|+ .+ ..-. .+ ++ ++.-...-
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 4443333 21 1000 00 00 00000001
Q ss_pred H--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-hhhHhhc-hH----HHHHHHH
Q 002912 451 E--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLN-NV----VDKVLLL 522 (867)
Q Consensus 451 ~--~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~-nl----l~rVl~L 522 (867)
. .+++.|...+.+ ....+-...||++|-.+. ++--+ +.|+-.+ .- +.-++.|
T Consensus 603 ~~~ga~~~L~~LL~s-------------------~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 603 STKVYWSTIENLMLD-------------------ENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp HSHHHHHHHHHGGGC-------------------SSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred HhcCHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 1 112222222211 123455667888888886 55433 3444322 22 4456678
Q ss_pred hhccchhhHHHHHHHHHHHhccchhHHHHHHHhh-CcHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002912 523 TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYI 587 (867)
Q Consensus 523 l~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 587 (867)
+.+.+.-.+-+|.-.+-.+- ..++..-+-|++. +.+++++++|.+.-+..++...++.=|....
T Consensus 663 l~s~D~~~r~AAagALAnLt-s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIA-TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHH-HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 88888889999988887763 3466677788876 7999999999886567777777766555544
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=88.43 E-value=17 Score=43.10 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhHhhc-hHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHH
Q 002912 486 EILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 564 (867)
Q Consensus 486 ~ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~ 564 (867)
..-.+.+.+|+..+.+.+-+....|+.. ..+.+++.+|..+...++=.|+-++-.+.. .+.-..+-+.-.|.|+++++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHH
Confidence 3445778999999999999999999977 578999999998889999999999988764 55557888888899999999
Q ss_pred HHHHhCC-CCcchHHHHHHHHHHHHhhCh
Q 002912 565 AFVANGN-RYNLLNSAVLELFEYIRKENL 592 (867)
Q Consensus 565 ~f~~ng~-R~NLlnSA~LElfefIr~eNi 592 (867)
++...|. +.-++-+=||.++.-+-+.|.
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9987664 677899999999999998884
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.07 E-value=32 Score=38.13 Aligned_cols=208 Identities=13% Similarity=0.124 Sum_probs=130.8
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.|...+++++ .+-+..++..|+.+|. + .+..| ..+++.|.++.+-..|+++++.++..|+-.|..+.-
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 445555665553 3567788888887663 1 12223 356688999999999999999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 466 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p 466 (867)
++|. .|..+++.... ..|++.|-...++.++.+.+.+|..|--.+ .-|..++ +..++.|++-|.....
T Consensus 74 ~~~~-~k~~i~~~G~i---~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~----~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 74 RSTT-NKLETRRQNGI---REAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELI----ADALPVLADRVIIPFS 141 (457)
T ss_dssp SCHH-HHHHHHHTTCH---HHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHH----HHHHHHHHHHTTHHHH
T ss_pred CCHH-HHHHHHHcCCH---HHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHH----hccHHHHHHHHhcccc
Confidence 7666 46667665543 344555543668899999999998886321 1344343 2667777776632100
Q ss_pred CcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhcCchhhhhHhhc-hHHHHHHHHhhc------cchhhHHHHHHHH
Q 002912 467 QEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRR------REKYLVVAAVRFV 538 (867)
Q Consensus 467 ~~~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~rVl~Ll~~------~~K~L~LaAlRF~ 538 (867)
. ..... ....+ .....++.+.+-.|..+... -..+..+... .++..++.+++. .+.-.+-.|+..+
T Consensus 142 ~--~~~~~--~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 215 (457)
T 1xm9_A 142 G--WCDGN--SNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215 (457)
T ss_dssp T--CC-----------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHH
T ss_pred c--cccCc--cchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHH
Confidence 0 00000 00000 12456777777777777765 2355667775 899999988874 2223455667777
Q ss_pred HHHh
Q 002912 539 RTIL 542 (867)
Q Consensus 539 R~iI 542 (867)
|++.
T Consensus 216 ~nLs 219 (457)
T 1xm9_A 216 HNLS 219 (457)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7754
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=83.93 E-value=33 Score=34.09 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=103.9
Q ss_pred HHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhh
Q 002912 364 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 443 (867)
Q Consensus 364 ~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d 443 (867)
..+.+.+-..|..|.+-|..+++..|... ...-..++..|...|-.|.+..++...+.+|..|... + +.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l----~~ 90 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--L----AK 90 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--H----GG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--H----hh
Confidence 34578888999999999998888755421 1111245666666554588888887777887777521 1 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHh
Q 002912 444 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT 523 (867)
Q Consensus 444 ~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll 523 (867)
.| ..++..++.+|+....+ .++.+-...++.|.-|+...+ -..++..++..+
T Consensus 91 ----~~-~~~~~~ilp~ll~~l~d---------------~~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l 142 (242)
T 2qk2_A 91 ----RF-SNYASACVPSLLEKFKE---------------KKPNVVTALREAIDAIYASTS--------LEAQQESIVESL 142 (242)
T ss_dssp ----GG-HHHHHHHHHHHHHGGGC---------------CCHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHT
T ss_pred ----hH-HHHHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHH
Confidence 13 34667777777764210 123344455666666665443 146788888888
Q ss_pred hccchhhHHHHHHHHHHHhccc--hhHHHHHHHhhCcHHHHHHHH
Q 002912 524 RRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 524 ~~~~K~L~LaAlRF~R~iI~lk--Defy~ryiIk~nLf~PIl~~f 566 (867)
..++..++..++.++..++... +.++..|+ ..+...++.++
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 8888899999999999988773 34455555 24455555555
No 65
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=83.69 E-value=18 Score=39.32 Aligned_cols=226 Identities=15% Similarity=0.130 Sum_probs=133.6
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcCh
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDP 389 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~-----------~d~~ir~~atDILi~iiehdP 389 (867)
....-.++.+|..+ |.. +..|. .+++.|.++.|-..|.. .+..++..|+-+|..+...++
T Consensus 46 ~~~~~~A~~aL~nl---s~d--~e~R~----~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~ 116 (354)
T 3nmw_A 46 EHQICPAVCVLMKL---SFD--EEHRH----AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116 (354)
T ss_dssp GGTHHHHHHHHHHH---HTS--HHHHH----HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred hHHHHHHHHHHHHH---cCC--HHHHH----HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH
Confidence 34455666666553 322 33343 45788999888877742 134578888888888887765
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 002912 390 NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 469 (867)
Q Consensus 390 ~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~ 469 (867)
. .|..+....+ .+..|+++| ...++.++.+...+|+.|-...+ ...|..+. -...++.|++-|....
T Consensus 117 ~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~---~~G~Ip~Lv~lL~~~~---- 183 (354)
T 3nmw_A 117 A-NKATLCSMKG--CMRALVAQL-KSESEDLQQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK---- 183 (354)
T ss_dssp H-HHHHHHHCHH--HHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHH---HTTHHHHHHHHHHHCC----
T ss_pred H-HHHHHHHcCC--cHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCC--HHHHHHHH---HCCCHHHHHHHHhcCC----
Confidence 4 2443433222 345666644 46788999999999999954211 11233332 2345788888765421
Q ss_pred cccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHh-hchHHHHHHHHhhccch----hhHHHHHHHHHHHhc-
Q 002912 470 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS- 543 (867)
Q Consensus 470 ~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~iI~- 543 (867)
...+....+-.|.-+.. |.-..|.-|. ....+.-++.|++.... -++-.|...+|++-.
T Consensus 184 --------------~~~~~~~A~~aL~nLs~-~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 184 --------------KESTLKSVLSALWNLSA-HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHHHc-cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 12233333344433333 2222355555 67788888888876543 255566777776543
Q ss_pred --cchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002912 544 --RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 586 (867)
Q Consensus 544 --lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 586 (867)
..++ +...+++.+.+.|++.++.. + ...+...|+--|...
T Consensus 249 ~a~~~~-~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 249 IATNED-HRQILRENNCLQTLLQHLKS-H-SLTIVSNACGTLWNL 290 (354)
T ss_dssp HTTCHH-HHHHHHTTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHH
T ss_pred ccCCHH-HHHHHHHcCCHHHHHHHHcC-C-ChHHHHHHHHHHHHH
Confidence 4555 67788999999999998863 2 223444455444444
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=82.00 E-value=20 Score=40.56 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=122.2
Q ss_pred HHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhh
Q 002912 352 DLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDM 420 (867)
Q Consensus 352 ~Lv~~GLf~vi~~~L~~-----------~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~gl 420 (867)
.+++.|.++.|-..|.. .+..++..|+-+|..+.-.++. .|..+....+ .+..|+++| ...++.+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v 259 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKG--CMRALVAQL-KSESEDL 259 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHH--HHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCC--cHHHHHHHH-hCCCHHH
Confidence 35688999888888742 2345677888888888877764 2433332222 355666655 4678899
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHh
Q 002912 421 HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 500 (867)
Q Consensus 421 k~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~ 500 (867)
+.+.+.+|+.|-...+ ...|..+. -...++.|++-|.... ...+....+-.|.-+..
T Consensus 260 ~~~A~~aL~nLs~~~~--~~~k~~I~---~~GaI~~LV~lLl~s~------------------~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 260 QQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK------------------KESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHHHHTSSCC--HHHHHHHH---HTTHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHH---HcCCHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHcc
Confidence 9999999999954211 11223222 2345777877664310 11222233333333333
Q ss_pred hcCchhhhhHh-hchHHHHHHHHhhccch----hhHHHHHHHHHHHhc---cchhHHHHHHHhhCcHHHHHHHHHHhCCC
Q 002912 501 HHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS---RHDEHLINHFVKNNLLKPIVDAFVANGNR 572 (867)
Q Consensus 501 ~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~iI~---lkDefy~ryiIk~nLf~PIl~~f~~ng~R 572 (867)
|.-..|.-|. ....+.-++.|+..... -++-.|...+|++-. ..++ +...|++.+.+.|++.++.. ++
T Consensus 317 -~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~-~~- 392 (458)
T 3nmz_A 317 -HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKS-HS- 392 (458)
T ss_dssp -HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSC-SC-
T ss_pred -CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcC-CC-
Confidence 2222344555 66788888888876543 256667777777654 4554 67788899999999988753 22
Q ss_pred CcchHHHHHHHHHHH
Q 002912 573 YNLLNSAVLELFEYI 587 (867)
Q Consensus 573 ~NLlnSA~LElfefI 587 (867)
....-.||--|...-
T Consensus 393 ~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 393 LTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 234455555454443
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=80.56 E-value=70 Score=38.00 Aligned_cols=232 Identities=15% Similarity=0.168 Sum_probs=125.5
Q ss_pred HHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHH
Q 002912 282 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 361 (867)
Q Consensus 282 ~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~v 361 (867)
+..|..+.-.+....=+.+.+.+.=+..|.+.|.++. ..-|.+++.+|-+++.-..++|. -+.-.|.|+.
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~iQk--------lVAFEnaFe~ 212 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGAIQK--------IVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHHHHH--------HHHHTTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHHHHH--------HHHHhccHHH
Confidence 3444444444444444455555666888888888753 56799999999998876666552 2234577777
Q ss_pred HHHHHcCCCc----chhhhhhHHHHHHHhcChHHHHHHHHhcCC-cchHHHHHHHHhccCCh------hhHH--HHHHHH
Q 002912 362 VTDALQSQDK----KLVLTGTDILILFLNQDPNLLRSYVVRQEG-IPLLGLLVKGMITDFGE------DMHC--QFLEIL 428 (867)
Q Consensus 362 i~~~L~~~d~----~ir~~atDILi~iiehdP~lvR~~i~~qe~-~~Ll~~Li~~ll~d~d~------glk~--Ql~eaL 428 (867)
+=.++..+.. .+..-+.-+|..++.++|+- . ..+++.+ .+-| +.++-.+.+. -++. -+.+++
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q-~~FrEt~~i~~L---~~LL~~~~~~~~W~~Qk~~N~~~~L~iI 287 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-Q-NFFKEGSYIQRM---KPWFEVGDENSGWSAQKVTNLHLMLQLV 287 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-H-HHHHHTTCGGGG---GGGGCCCSCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-H-HHHHHcCCHHHH---HHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 7666665543 23344556788899999873 3 3344322 2111 1111111111 1122 267899
Q ss_pred HHhcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhh
Q 002912 429 RSLLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIK 507 (867)
Q Consensus 429 k~LLDp~~m~~~e~d~FL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK 507 (867)
|+|+.|.+.....+ ..=..|++.. +..|+.-++... ....+....+-.++=.++.|+. ..
T Consensus 288 rlLv~~~~~~~~t~-~nQ~~~~~~g~l~~Ll~ll~~~~-----------------~p~~i~~~Al~tla~~irgN~~-~Q 348 (651)
T 3grl_A 288 RVLVSPNNPPGATS-SCQKAMFQCGLLQQLCTILMATG-----------------VPADILTETINTVSEVIRGCQV-NQ 348 (651)
T ss_dssp HHHTCTTSCHHHHH-HHHHHHHHTTHHHHHHHHHTCSS-----------------CCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHhCCCCCCCCCH-HHHHHHHHCCCHHHHHHHHccCC-----------------CCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 99999876421111 1223455554 456666554321 1122323333333334555533 23
Q ss_pred hhHhhc--------h-HHHHHHHHhhccch-hhHHHHHHHHHHHhccchh
Q 002912 508 CNFLLN--------N-VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDE 547 (867)
Q Consensus 508 ~~il~~--------n-ll~rVl~Ll~~~~K-~L~LaAlRF~R~iI~lkDe 547 (867)
.+|-.. . ++.-.+.++++++. -++++|.-||++.+.-+++
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 333322 2 22222334666664 5689999999999877764
No 68
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=80.29 E-value=4.7 Score=45.23 Aligned_cols=248 Identities=19% Similarity=0.295 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHhh--cChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHH---HHh--cCCh
Q 002912 134 IELSTLPLILKTVTE--SGIADQMRLTELILNDQDFFRKLMDLFRICEDLE---NIDGLHMIFKIIKG---IIL--LNSP 203 (867)
Q Consensus 134 ~el~nL~eIl~~i~~--~s~~~rerla~~Il~~~~Yi~kLl~LF~~cEdle---n~~~Lh~L~~IvK~---Iil--LNd~ 203 (867)
|.+.+|.-+.+++.. .++.-.-++++-.+ |..++.+|+++|+...--| -..-||++|.=+-+ .|. +| +
T Consensus 96 ~sWpHLqlVYe~llrfi~s~~f~~~~~k~~i-d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~in-n 173 (403)
T 3fga_B 96 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYI-DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN-N 173 (403)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTS-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-H
T ss_pred cCcHHHHHHHHHHHHHHhccccChhhHHhhc-CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-H
Confidence 445567766666533 12211223443333 5689999999997532222 13345554332211 111 11 1
Q ss_pred hhHhhhhcchhHhHHhhhccc------CCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhccccc
Q 002912 204 QIFEKIFGDELMMDIIGSLEY------DPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVL 277 (867)
Q Consensus 204 ~I~E~llsDe~i~~VvG~LEY------DPe~p~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiL 277 (867)
-++..+...+..-||--.||- .=..|-+..|+.||.+ =.+|+-- +-. +
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~-----vLlPLHk---------~~~------------~ 227 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK-----VLLPLHK---------VKS------------L 227 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-----TTTGGGG---------STT------------G
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHH-----HHHHHHc---------CCc------------c
Confidence 233344455555555545542 2223444578887752 2233321 111 1
Q ss_pred chhhHHhHHHHHHHhH--HHHHHHhhCCHHHHHHHHHHh-CC-CCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 002912 278 DEATVANLNSIIHGNN--AYVVSLLKDDSTFIQELFARL-RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 353 (867)
Q Consensus 278 DD~t~s~LnSlIffNq--veIV~~Lq~d~~FL~eLF~~l-~~-~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~L 353 (867)
+ .|..| .+|++++..|+..-..++.-+ += |.++. . .-|.||.|+-.+...+++.. |...
T Consensus 228 -----~-----~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns--~-KevlFL~Ele~iLe~~~~~~----f~~i 290 (403)
T 3fga_B 228 -----S-----VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHS--P-KEVMFLNELEEILDVIEPSE----FVKI 290 (403)
T ss_dssp -----G-----GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCH--H-HHHHHHHHHHHHHTTCCHHH----HHHH
T ss_pred -----h-----hhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCc--H-HHHHHHHHHHHHHHhCCHHH----HHHH
Confidence 0 12222 278999999986544444322 11 22221 1 23779999988887776543 2211
Q ss_pred HhcCcHHHHHHHHcCCCcchhhhhh-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHH
Q 002912 354 MNEGIFDIVTDALQSQDKKLVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 428 (867)
Q Consensus 354 v~~GLf~vi~~~L~~~d~~ir~~at-----DILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 428 (867)
..-||..|..++.++..+|--.|. +-++.++..++..+--.++ ..|.+..-.-=+..++.....+|
T Consensus 291 -~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~--------p~L~~~~~~HWn~~v~~l~~~vl 361 (403)
T 3fga_B 291 -MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMF--------PSLYRNSKTHWNKTIHGLIYNAL 361 (403)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHH--------HHHHHTTSCCSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHccCHHHHHHHHHHH
Confidence 122677888888888766543332 5555566555554433221 22222222223677788888999
Q ss_pred HHhcCCC
Q 002912 429 RSLLDSY 435 (867)
Q Consensus 429 k~LLDp~ 435 (867)
|+|+|-+
T Consensus 362 k~l~e~d 368 (403)
T 3fga_B 362 KLFMEMN 368 (403)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 9997643
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.37 E-value=41 Score=32.27 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHH---------hhhccChHhHHHHHHHHHhcC---cHHHHHHHHcCC
Q 002912 302 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG---------LSKSLQMVQQLRLFRDLMNEG---IFDIVTDALQSQ 369 (867)
Q Consensus 302 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~---------lsK~LQ~~~R~~lf~~Lv~~G---Lf~vi~~~L~~~ 369 (867)
.++..+..|...+++++ ...|..++.-|.++.. +.++-.+.-|......|...| .++.+...|.++
T Consensus 16 ~~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE 93 (211)
T ss_dssp CCGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred cCHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 34555666666666443 3445555544443321 111112233444444444332 556666666666
Q ss_pred CcchhhhhhHHH
Q 002912 370 DKKLVLTGTDIL 381 (867)
Q Consensus 370 d~~ir~~atDIL 381 (867)
++.+|..++..|
T Consensus 94 ~~~vr~~a~~aL 105 (211)
T 3ltm_A 94 DGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666665554444
No 70
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=79.03 E-value=5.3 Score=45.43 Aligned_cols=75 Identities=29% Similarity=0.420 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHhcCChh----hHHHHHHH---HHHHHhcC-ChhhHhhhhcchhHhHHhhhcc------cCCCCC
Q 002912 164 DQDFFRKLMDLFRICEDLENID----GLHMIFKI---IKGIILLN-SPQIFEKIFGDELMMDIIGSLE------YDPDVP 229 (867)
Q Consensus 164 ~~~Yi~kLl~LF~~cEdlen~~----~Lh~L~~I---vK~IilLN-d~~I~E~llsDe~i~~VvG~LE------YDPe~p 229 (867)
+..++.+|+++|+. ||...-+ -||+||.= .|..|.-. .+-++..+...+..-||--+|| -.=..|
T Consensus 160 d~~Fi~~Ll~lfdS-eDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~P 238 (449)
T 2npp_B 160 DQKFVLQLLELFDS-EDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 238 (449)
T ss_dssp CHHHHHHHHHTTTS-STHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSS
T ss_pred CHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999973 3333222 33333320 01111100 0123344445555555555555 233334
Q ss_pred CccchhHhhh
Q 002912 230 HVQHHRNFLK 239 (867)
Q Consensus 230 ~~~nHR~fL~ 239 (867)
-+..|+.||.
T Consensus 239 LKeehk~fl~ 248 (449)
T 2npp_B 239 LKEEHKIFLL 248 (449)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 4567888874
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=77.51 E-value=85 Score=34.72 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCC
Q 002912 359 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 438 (867)
Q Consensus 359 f~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 438 (867)
++.+-..|.+++..++..|+..|..+..+++. .|..+.+.. -+..|++.| ...++.++.+...+|+.|.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g---~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~--- 75 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLG---GICKLVDLL-RSPNQNVQQAAAGALRNLVFRS--- 75 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTT---HHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCC---
Confidence 34555677888999999999999998877765 454455433 244556544 5678889989999999886420
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHH
Q 002912 439 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 518 (867)
Q Consensus 439 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~r 518 (867)
...|..+.+ ...++.|++-|... ..+++....+-.|.-+..+. ..|..|+. ..+..
T Consensus 76 ~~~k~~i~~---~G~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~ 131 (457)
T 1xm9_A 76 TTNKLETRR---QNGIREAVSLLRRT------------------GNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPV 131 (457)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHTTC------------------CCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHhhC------------------CCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHH
Confidence 112322221 24567777766311 02234445566666666653 35677888 99999
Q ss_pred HHHHhhc--------c--------chhhHHHHHHHHHHHhccchhHHHHHHHhh-CcHHHHHHHHHH
Q 002912 519 VLLLTRR--------R--------EKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVA 568 (867)
Q Consensus 519 Vl~Ll~~--------~--------~K~L~LaAlRF~R~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ 568 (867)
++.++.. . ..-+.-.|++.++++-+- ++ .-..|++. +++.|++.++..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHh
Confidence 9999832 1 123344788888887754 44 55667776 999999998874
No 72
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=76.47 E-value=46 Score=38.94 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=105.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCcccCC
Q 002912 405 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVEST 483 (867)
Q Consensus 405 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~ 483 (867)
+..|+.+|-...++.++.+...||.-|...... ....+-..+- ...++.|++-|.. .
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~---~~~~~~~~v~~~~glp~Lv~LL~s-------------------~ 367 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQEKALSAIADLLTN-------------------E 367 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH---HHHHHHHHHTSHHHHHHHHHGGGC-------------------S
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHcCcHHHHHHHHcC-------------------C
Confidence 456677776667889999999999998643211 1111111222 2345555553321 1
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccc--------hhhHHHHHHHHHHHhccchhHHHHHHHh
Q 002912 484 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRRE--------KYLVVAAVRFVRTILSRHDEHLINHFVK 555 (867)
Q Consensus 484 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~--------K~L~LaAlRF~R~iI~lkDefy~ryiIk 555 (867)
...+....|-.|..+..++. .+..| ....+.++++||.+.+ .-.+.+|++.+.+++.-+++ ..+.|+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~ 443 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRE 443 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 34566778888999988764 45544 6789999999987653 23567899999999866555 6889999
Q ss_pred hCcHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002912 556 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 588 (867)
Q Consensus 556 ~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 588 (867)
.+.+.+++.++.......+..-.|+.=|.....
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 999999999986433455677777776666544
No 73
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.08 E-value=94 Score=38.57 Aligned_cols=219 Identities=9% Similarity=0.065 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 382 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK-~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi 382 (867)
+.-|..|+..+.+++ .+-|+.+...|.+...-.. .+.+... ..+++.+-..|.+++..+|.+|...|.
T Consensus 5 ~~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~---------~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSE---------RKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHH---------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHH---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345778888887654 5677777777666442210 1111111 123444555677899999999999998
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002912 383 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 462 (867)
Q Consensus 383 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 462 (867)
.++..-+.-.+. .++..|++.+ .+.++.++.....+|..+..--.-.. ....+...+++..++.|+.-+.
T Consensus 74 ~l~~~~~~~~~~--------~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 74 PLVSKVKEYQVE--------TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHTTSCHHHHH--------HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHH--------HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHc
Confidence 888766552222 2455666654 45566677666677766653111000 0012344455566666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 463 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 463 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
+. . ....-...++.|+-++....-.+..|+ ..++..++.++...+..++-.|++.+..++
T Consensus 144 ~~-----------~-------~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 144 KQ-----------E-------DVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CC-----------S-------CHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred CC-----------C-------chHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 10 0 112223344555554543333333332 668888888888888899999999999987
Q ss_pred ccc-hhHHHHHHHhhCcHHHHHHHHHHh
Q 002912 543 SRH-DEHLINHFVKNNLLKPIVDAFVAN 569 (867)
Q Consensus 543 ~lk-Defy~ryiIk~nLf~PIl~~f~~n 569 (867)
..- +++ -..++.+++..+...
T Consensus 204 ~~~~~~~------~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 204 MSCGNIV------FVDLIEHLLSELSKN 225 (1230)
T ss_dssp TTC----------CTTHHHHHHHHHHHT
T ss_pred HhcCHHH------HHHHHHHHHHHhccC
Confidence 653 333 234556666666553
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=73.03 E-value=53 Score=33.59 Aligned_cols=183 Identities=10% Similarity=0.119 Sum_probs=108.3
Q ss_pred cHHhHHHHHHHHHH-HHHhhhccCh--HhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHHHHhcCh-HHHH-
Q 002912 320 LEESKKNLVHFLHE-FCGLSKSLQM--VQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDP-NLLR- 393 (867)
Q Consensus 320 ~~e~rrdlV~FL~E-~c~lsK~LQ~--~~R~~lf~~Lv~~GLf~vi~~~L-~~~d~~ir~~atDILi~iiehdP-~lvR- 393 (867)
.-..|++++.=|.. ++.=+..+.+ .. | ..++..+..+| ++.+..+|..|+..|..+...=. .-+.
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~----~-----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQN----Y-----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCC----C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCccc----H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34667777765555 5431222321 11 1 13456677788 78899999999999988774221 1122
Q ss_pred HHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccc
Q 002912 394 SYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQS 473 (867)
Q Consensus 394 ~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~ 473 (867)
.|.. .++..|++.+ .|...-++..+..+|..++..-+..... .+++.++..|+....
T Consensus 100 ~y~~-----~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~----------~~l~~ll~~l~~~l~------- 156 (249)
T 2qk1_A 100 DYVS-----LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASS----------GRNEDMLKDILEHMK------- 156 (249)
T ss_dssp HHHH-----HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTT----------CTTHHHHHHHHHHTT-------
T ss_pred HHHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccC----------CcHHHHHHHHHHHHc-------
Confidence 3332 2555666654 6777888888888877776532111000 002333333433210
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhh--HhhchHHHHHHHHhhccchhhHHHHHHHHHHHh
Q 002912 474 ASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN--FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 542 (867)
Q Consensus 474 ~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~--il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 542 (867)
..++++=...+..|+.|+.+..-..+.| .+...++..+..++.-.++-++-+|..++-++.
T Consensus 157 --------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 --------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp --------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1133445567888888888876432222 123678888899999888999999999988854
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=70.88 E-value=1e+02 Score=35.21 Aligned_cols=231 Identities=14% Similarity=0.181 Sum_probs=122.4
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.+...+.++ ++.-|+.++.-|..++.....+ +...|+++.+..+|.++|+.++..|+-.|..+..
T Consensus 123 ~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~-----------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 123 CEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQM-----------VEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCC-----------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhh-----------cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 44566666654 4566777777676666643221 1123678899999999999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 466 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p 466 (867)
++|... .+. -....+.-|+..+ .+.++=++..+.++|..+. |.. . ..+..++.++....
T Consensus 190 ~~~~~~---~~~-l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~-~~~----~----------~~~~~~l~~l~~~l- 248 (591)
T 2vgl_B 190 SHPNSN---LLD-LNPQNINKLLTAL-NECTEWGQIFILDCLSNYN-PKD----D----------REAQSICERVTPRL- 248 (591)
T ss_dssp SCCSCC---SCC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSC-CCS----H----------HHHHHHHHHHTTCS-
T ss_pred hCCCcc---chh-ccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhC-CCC----h----------HHHHHHHHHHHHHH-
Confidence 887420 000 0001222333332 3567777777777776654 221 0 11234444554321
Q ss_pred CcccccccCCCCcccCCcHHHHHHHHHHHHHHHh---hcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 467 QEGIAQSASSGGRVESTKPEILSNICELLCFCVL---HHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~---~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
+...+.+....+..++.+.. +++-.++. +...+....+.|+. ++.-++.+|++-+..++.
T Consensus 249 --------------~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 249 --------------SHANSAVVLSAVKVLMKFLELLPKDSDYYNM--LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp --------------CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH--HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred --------------cCCChHHHHHHHHHHHHHhhccCCCHHHHHH--HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 11123444555555555542 12222221 11233333334554 667788888888877765
Q ss_pred cchhHHHHHHH----h-hCc---HHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002912 544 RHDEHLINHFV----K-NNL---LKPIVDAFVANGNRYNLLNSAVLELFEYIRK 589 (867)
Q Consensus 544 lkDefy~ryiI----k-~nL---f~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 589 (867)
...+.+..|+- . ++= =.--++++..-++..| +...+-+|.+|++.
T Consensus 312 ~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n-v~~iv~~L~~~l~~ 364 (591)
T 2vgl_B 312 KRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN-IAQVLAELKEYATE 364 (591)
T ss_dssp HCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST-HHHHHHHHHHHTTS
T ss_pred hChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh-HHHHHHHHHHHHhc
Confidence 43333222211 0 110 0112455555556666 34556667777643
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.37 E-value=69 Score=37.28 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHcCCCcchhhhhhHHHHHHHhcChH--HHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCC
Q 002912 361 IVTDALQSQDKKLVLTGTDILILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 436 (867)
Q Consensus 361 vi~~~L~~~d~~ir~~atDILi~iiehdP~--lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 436 (867)
.+...|.+.++.+|-.|.+.|..++...|. .+.. ....++..+-.+.|..++....++|-.|.++.|
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~---------~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT---------HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT---------THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 334445566777777777777777766652 2211 223334434338888899888888888876643
No 77
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=68.40 E-value=13 Score=35.57 Aligned_cols=91 Identities=22% Similarity=0.356 Sum_probs=64.9
Q ss_pred EEEeCC-CCCceeccceEEEEEee-C--C----CcceeEEEEec--CCCcceEEeecCCCcccccccCeEEEecCCCccc
Q 002912 16 VYRLND-DGKWDDQGTGHVTVDSM-E--R----SEELCLFVIDE--EDNETILLHRISPDDIYRKQEDTIISWRDPEYST 85 (867)
Q Consensus 16 VY~L~~-~~~W~D~GTG~~s~~~~-e--~----~~~~~L~V~sE--~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 85 (867)
|..-++ .+.|.--|-|=++..++ . + .... ..|.++ .|...+|+..|.++-.|.|=-.|.=.|.+++ .
T Consensus 20 Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~-yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~--~ 96 (130)
T 3syx_A 20 VMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCAD-FFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDD--K 96 (130)
T ss_dssp EEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEE-EEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT--E
T ss_pred eeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcE-EEEEEEecCCCeEEEeeeecCCceEEecccccccccccC--e
Confidence 666665 56799987654443332 2 1 1123 334444 6778899999999999999999999999987 4
Q ss_pred cccccccCccchhHHHHHHHHHhh
Q 002912 86 ELALSFQEPTGCSYIWDNICNVQR 109 (867)
Q Consensus 86 DlALSFQE~~GC~~IWe~I~~VQ~ 109 (867)
=+-|.||.++.....=+.+.++-.
T Consensus 97 ~yGL~F~S~~dA~~F~~~~~~Al~ 120 (130)
T 3syx_A 97 KFGLTFQSPADARAFDRGIRRAIE 120 (130)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EeecccCCHHHHHHHHHHHHHHHH
Confidence 489999999988776655555443
No 78
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.19 E-value=36 Score=42.27 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=115.4
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCcchhhhhhHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILIL 383 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~-~~d~~ir~~atDILi~ 383 (867)
.+++.|...+.+++. .-|.-+..-|.+++. .+.+.....-+..-.-..+++.+-.++. +++..+|..|.++|..
T Consensus 86 ~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~---~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKE--QLRDISSIGLKTVIG---ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHTTCSSS--HHHHHHHHHHHHHHH---HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH--HHHHHHHHHHHHHHH---hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 355666666766554 335556655665543 4443310000001112246777777887 5788899999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 463 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~ 463 (867)
+++..+..+-.|+ ..++..|...| .+.++.++.+...+|..+...-. +. ||+..++.|+..|..
T Consensus 161 ~~~~~~~~l~~~~-----~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~------~~----~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 161 MLSRQGGLLVNFH-----PSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCG------NI----VFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHTCSSCTTTH-----HHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC--------------CTTHHHHHHHHHHH
T ss_pred HHHHhHhHHHHHH-----HHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcC------HH----HHHHHHHHHHHHhcc
Confidence 9876543222111 12444444433 46778899999999999875321 11 366777888877765
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhc
Q 002912 464 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 543 (867)
Q Consensus 464 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 543 (867)
... ..++.. .|+.+..++.....+++.|+ ..++.-++..+...+.-++-+|+.++-.++.
T Consensus 225 ~~~-----------~~~r~~-------a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 225 NDS-----------MSTTRT-------YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp TCS-----------SCSCTT-------HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred CCc-----------hhHHHH-------HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 210 011211 24555555555554554433 4688888888877777788888888887665
Q ss_pred c
Q 002912 544 R 544 (867)
Q Consensus 544 l 544 (867)
.
T Consensus 285 ~ 285 (1230)
T 1u6g_C 285 R 285 (1230)
T ss_dssp C
T ss_pred H
Confidence 4
No 79
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=65.18 E-value=25 Score=33.65 Aligned_cols=95 Identities=13% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCeEEEEeCC-CCCceeccceEEEEEeeCCC--cceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCccccc
Q 002912 11 ANPMQVYRLND-DGKWDDQGTGHVTVDSMERS--EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 87 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GTG~~s~~~~e~~--~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 87 (867)
+..|-||..++ .++|.-.|..=.-..| ++. .-.+++|.+-.+.+.+. ..|.++..++-|++-|| |...+ +.-+
T Consensus 35 a~~v~vY~f~~~~~~W~K~~iEG~LFv~-~R~~~P~~~~ivLNR~~~~n~~-~~l~~~~~~e~~~~~li-~r~~~-~~I~ 110 (134)
T 2lyd_A 35 SSHVAFYTFNSSQNEWEKTDVEGAFFIY-HRNAEPFHSIFINNRLNTTSFV-EPITGSLELQSQPPFLL-YRNER-SRIR 110 (134)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEE-ECSSSSSEEEEEEETTTTEEEE-EECCSSCEEEEETTEEE-EEEGG-GEEE
T ss_pred CCeEEEEEecCCcCceeEcCCcceEEEE-EccCCCceEEEEEcCCCCccee-EEcCCCcEEEeeCCEEE-EECCC-CcEE
Confidence 34577999975 4679887542111112 332 23568887776665443 45888999999988665 55443 4568
Q ss_pred cccccCccchhHHHHHHHHHhh
Q 002912 88 ALSFQEPTGCSYIWDNICNVQR 109 (867)
Q Consensus 88 ALSFQE~~GC~~IWe~I~~VQ~ 109 (867)
.|-|-+.+-|..|.+.+..+++
T Consensus 111 GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 111 GFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp EEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEecChHHHHHHHHHHHHHHh
Confidence 9999999999999999988865
No 80
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=57.59 E-value=1.4e+02 Score=30.65 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=80.3
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.|...+.+++...+.+..+...|+-+|.- .++.|. .+++.|.++.+-..|.+++..++..|+-.|..+.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~----~~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ----KSEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC----CcHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5666677777665556677777777765531 122232 35688999999999999999999999999988887
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
.++. -|..|.+..+ +..|+++|-...+..++.+...+|..|=
T Consensus 82 ~~~~-nk~~I~~~Ga---I~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 82 EDND-NKLEVAELNG---VPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TCHH-HHHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHcCC---HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 6665 3555665443 3344555544568899999999998883
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=56.84 E-value=2e+02 Score=30.33 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=85.8
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCC-----CCCCch
Q 002912 366 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-----YTLSGA 440 (867)
Q Consensus 366 L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-----~~m~~~ 440 (867)
|-+.|.+-+..|.|.|...++.+|..+-..+ | .++..+. .-++|++.-+....+++|..|++- ..|...
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l----D-ll~kw~~-lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNS----D-LLLKWCT-LRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH----H-HHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHH----H-HHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3456778888999999988888774332100 0 0222221 123466776666666666666531 112211
Q ss_pred hhhH----------------------HHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 002912 441 QRDT----------------------IIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 497 (867)
Q Consensus 441 e~d~----------------------FL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 497 (867)
|-.. .+..++.-+ ..+++..+.... ....+-.=.-.|+.+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---------------ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---------------KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---------------GCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHH
Confidence 1112 222222211 233344443321 11112223456788888
Q ss_pred HHhhcCchhhhhHhhchHH---HHHHHHhhccchhhHHHHHHHHHHHhcc-chh
Q 002912 498 CVLHHPYRIKCNFLLNNVV---DKVLLLTRRREKYLVVAAVRFVRTILSR-HDE 547 (867)
Q Consensus 498 cv~~H~yriK~~il~~nll---~rVl~Ll~~~~K~L~LaAlRF~R~iI~l-kDe 547 (867)
++..|..-- ...+ .-|+.++..++.-++=+|+.++-.|... .|.
T Consensus 194 li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 194 YITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 888887651 2355 7788999999999999999998876432 444
No 82
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=54.26 E-value=47 Score=31.47 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=60.1
Q ss_pred CCCeEEEEeCC-CCCceeccc---eEEEEEeeCCCcceeEEEEecCCCcceEEeecCCCcccccccCeEEEecCCCcccc
Q 002912 11 ANPMQVYRLND-DGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 86 (867)
Q Consensus 11 ~~~VKVY~L~~-~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 86 (867)
+..|-||..+. .++|...|. =|+..- . ....+++|.+-.+.+.+ ...|.++..++-|++-|| |+.+. +.=
T Consensus 30 a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R--~-~P~~~~iVlNR~~~~n~-~~~i~~~~~~e~~~~~l~-~r~~~-~~i 103 (127)
T 2qkl_A 30 ASHVAVYQFDVGSQKWLKTSIEGTFFLVKD--Q-RARVGYVILNRNSPENL-YLFINHPSNVHLVDRYLI-HRTEN-QHV 103 (127)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEE--T-TCCEEEEEEESSSSCCE-EEEECSGGGEEEETTEEE-EEETT-TEE
T ss_pred CCeEEEEEecCCCCceEEcCcEEEEEEEEc--c-CCceEEEEEcCCCCcCe-eEecCCCceEEEeCCEEE-EEcCC-CcE
Confidence 34567999985 579988753 333221 1 23356788777766543 446888999998877555 66654 677
Q ss_pred ccccccCccchhHHHHHHHHH
Q 002912 87 LALSFQEPTGCSYIWDNICNV 107 (867)
Q Consensus 87 lALSFQE~~GC~~IWe~I~~V 107 (867)
++|=|-+.+-|..|.+.+..+
T Consensus 104 ~GiWf~~~~d~~~i~~~l~~l 124 (127)
T 2qkl_A 104 VGLWMFDPNDMSRIFNIVKES 124 (127)
T ss_dssp EEEEESSTHHHHHHHHHHHHH
T ss_pred EEEEEEchHHHHHHHHHHHHH
Confidence 888999999999998887664
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=53.73 E-value=3.6e+02 Score=32.50 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=59.0
Q ss_pred HHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh-h------ccChHhHHHHHHHHHhcCcHHHHHHHHcC
Q 002912 296 VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-K------SLQMVQQLRLFRDLMNEGIFDIVTDALQS 368 (867)
Q Consensus 296 IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K------~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~ 368 (867)
-++.++..+.|+.-|..++.+.+.+.+-|.=+...||.++.-. + .+.+..|..+= ..|+..+. +
T Consensus 26 ~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~----~ 96 (960)
T 1wa5_C 26 NLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMI----S 96 (960)
T ss_dssp HHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHH----H
T ss_pred HHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHH----h
Confidence 3345677889999999998777777777888888888887543 1 35555544332 22233222 2
Q ss_pred CCcchhhhhhHHHHHHHhcC-----hHHHHH
Q 002912 369 QDKKLVLTGTDILILFLNQD-----PNLLRS 394 (867)
Q Consensus 369 ~d~~ir~~atDILi~iiehd-----P~lvR~ 394 (867)
....+|...++++..|+.+| |.++-.
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 34778888888888877764 666554
No 84
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=51.75 E-value=3.1e+02 Score=31.15 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++-..|++++ .++|++++.=|--+..++... ..+++.+++ .+++++..+|..|-=-+..+.+
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcc
Confidence 455666666553 456666664443333333321 234555565 5677777777666555555555
Q ss_pred cChHH
Q 002912 387 QDPNL 391 (867)
Q Consensus 387 hdP~l 391 (867)
.+|.+
T Consensus 79 ~~~e~ 83 (591)
T 2vgl_B 79 SQPDM 83 (591)
T ss_dssp HSHHH
T ss_pred cCchH
Confidence 55554
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=50.70 E-value=43 Score=34.28 Aligned_cols=76 Identities=7% Similarity=0.232 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
+..|..||..+++++ ..-|..++.||-.++.-++.- +. -|...+...|++++..+|.+.++.+|..|++.+..
T Consensus 145 ~~ll~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~~~--~~---~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 145 EDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDG--YS---TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCCSC--SH---HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCc--ch---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 468889999998764 477889999999999876542 11 12222335688999999999999999999999987
Q ss_pred HHh
Q 002912 384 FLN 386 (867)
Q Consensus 384 iie 386 (867)
+..
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 86
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.44 E-value=1.7e+02 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=14.8
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHH
Q 002912 358 IFDIVTDALQSQDKKLVLTGTDILI 382 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~atDILi 382 (867)
.++.+..+|.++++.+|..++..|.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666655554443
No 87
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.12 E-value=1.3e+02 Score=33.72 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHhhCCHHHHHHHHHHh-C---CCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002912 295 YVVSLLKDDSTFIQELFARL-R---SPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQD 370 (867)
Q Consensus 295 eIV~~Lq~d~~FL~eLF~~l-~---~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d 370 (867)
+|++++..|+..-..++.-+ + -.+... -|.||.|+-.+...+++.+=...- .-||..|..++.++.
T Consensus 282 cv~qf~eKDp~L~~~vi~~LLk~WP~tns~K-----evlFL~eleeiLe~~~~~~f~~i~-----~~lF~~la~ci~S~h 351 (392)
T 2jak_A 282 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPK-----EVMFLNELEEILDVIEPSEFVKIM-----EPLFRQLAKCVSSPH 351 (392)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTT-----HHHHHHHHHHHHHTCCHHHHHHHH-----HHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCCc
Confidence 78889988876444444322 1 122222 288999999888877765432222 235667777787777
Q ss_pred cchhhh
Q 002912 371 KKLVLT 376 (867)
Q Consensus 371 ~~ir~~ 376 (867)
.+|--.
T Consensus 352 fqVAEr 357 (392)
T 2jak_A 352 FQVAER 357 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665433
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=48.03 E-value=2.5e+02 Score=35.42 Aligned_cols=178 Identities=14% Similarity=0.194 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhh---ccChHhHHHHHHHHHhc--CcHHHHHHHHcCC-------
Q 002912 302 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK---SLQMVQQLRLFRDLMNE--GIFDIVTDALQSQ------- 369 (867)
Q Consensus 302 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK---~LQ~~~R~~lf~~Lv~~--GLf~vi~~~L~~~------- 369 (867)
+=++|+.+|+..+.+ +...+.-++.+|..+|.-.. .+....|..+...|... .||.++..+|...
T Consensus 131 ~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~ 207 (1204)
T 3a6p_A 131 HWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQV 207 (1204)
T ss_dssp TCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346788888877754 23345556777777764321 22222222333333322 2334444444321
Q ss_pred ------------CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCC
Q 002912 370 ------------DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 437 (867)
Q Consensus 370 ------------d~~ir~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 437 (867)
+..++..+.+.+...+.--|. +++.. ....++..++. ++. ++.++...+++|..++. ..|
T Consensus 208 ~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~---~~i~~-~~~~ll~~l~~-~l~--~~~lr~~A~ecL~~i~s-~~~ 279 (1204)
T 3a6p_A 208 KTDTSQESKAQANCRVGVAALNTLAGYIDWVSM---SHITA-ENCKLLEILCL-LLN--EQELQLGAAECLLIAVS-RKG 279 (1204)
T ss_dssp TTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH---HHHHT-TTSHHHHHHHH-GGG--CTTTHHHHHHHHHHHHT-CCS
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHhccCH---HHHHh-ccchHHHHHHH-HcC--CHHHHHHHHHHHHHHHh-CCC
Confidence 122333444444433333221 11121 12346777664 333 56788888999999986 333
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhh
Q 002912 438 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH 501 (867)
Q Consensus 438 ~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~ 501 (867)
...++..++.+|+...+..+++-+....+. . +.....+....+|+|++-+..+
T Consensus 280 ~~~~~~~li~~l~~~~l~~l~~~~~~~~~~-~----------~~e~d~e~~k~l~~ll~~lg~~ 332 (1204)
T 3a6p_A 280 KLEDRKPLMVLFGDVAMHYILSAAQTADGG-G----------LVEKHYVFLKRLCQVLCALGNQ 332 (1204)
T ss_dssp CHHHHGGGGGGGSHHHHHHHHHHHHTCCCC-S----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHhhHHHHHHHHHhhcCCCC-C----------CccHHHHHHHHHHHHHHHHHHH
Confidence 333555566666665555665543211110 0 0111234556777777766654
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=45.90 E-value=4.5e+02 Score=31.31 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHhhhee------eeeeehhcccccc---hhhHHhHHHHHHHhHHHHHHH--hhCCHHHHHHHHHHhCC---CCc
Q 002912 254 LVLSKIHQTYRV------GYLKDVVLARVLD---EATVANLNSIIHGNNAYVVSL--LKDDSTFIQELFARLRS---PTT 319 (867)
Q Consensus 254 ~i~~KIHqtYRL------qYLKDVVLpRiLD---D~t~s~LnSlIffNqveIV~~--Lq~d~~FL~eLF~~l~~---~~~ 319 (867)
.++.+|+..|.- .+||+-+|.-+.. ++ ..+-.-+..-=+.|+.+ ..+=++|+.+|+..+.+ ...
T Consensus 81 ~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~--~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~ 158 (963)
T 2x19_B 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS--KIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVD 158 (963)
T ss_dssp HHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------
T ss_pred HHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCC
Q ss_pred cHHhHHHHHHHHHHHH--HhhhccChHhHHHHHHHHHhcC--cHHHHHHHHcCCCcc--hhhhhhHHHHHHHhcChHHHH
Q 002912 320 LEESKKNLVHFLHEFC--GLSKSLQMVQQLRLFRDLMNEG--IFDIVTDALQSQDKK--LVLTGTDILILFLNQDPNLLR 393 (867)
Q Consensus 320 ~~e~rrdlV~FL~E~c--~lsK~LQ~~~R~~lf~~Lv~~G--Lf~vi~~~L~~~d~~--ir~~atDILi~iiehdP~lvR 393 (867)
+...+.-++.+|+.+| .....+....|..+...|...- +++++..+|...... ++..+...+...+..+....
T Consensus 159 ~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~- 237 (963)
T 2x19_B 159 GQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ- 237 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG-
T ss_pred cHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc-
Q ss_pred HHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccc
Q 002912 394 SYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQS 473 (867)
Q Consensus 394 ~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~ 473 (867)
....++..+++.+ .++.+....+++|..++. ....+.....+..++...+.. ...+...
T Consensus 238 ------~~~~ll~~l~~~l---~~~~~~~~a~~~l~~i~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~--------- 296 (963)
T 2x19_B 238 ------DCEALIQAAFAAL---QDSELFDSSVEAIVNAIS--QPDAQRYVNTLLKLIPLVLGL-QEQLRQA--------- 296 (963)
T ss_dssp ------GTHHHHHHHHHHT---TSTTTHHHHHHHHHHHHT--CTTGGGCHHHHHHHHHHHHTT-HHHHHHH---------
T ss_pred ------cchHHHHHHHHHh---CCchHHHHHHHHHHHHHc--ccccccCHHHHHHHHHHHHhh-HHHHHHH---------
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhh----hhHhhchHHHHHHHHhhc-----cchhhHHHHHHHHHHHhc-
Q 002912 474 ASSGGRVESTKPEILSNICELLCFCVLHHPYRIK----CNFLLNNVVDKVLLLTRR-----REKYLVVAAVRFVRTILS- 543 (867)
Q Consensus 474 ~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK----~~il~~nll~rVl~Ll~~-----~~K~L~LaAlRF~R~iI~- 543 (867)
+...+.+.+..+|++++-+...|.-.+. .--.-..++.-++.++.. .+--+...|+-|.-+++.
T Consensus 297 ------~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~ 370 (963)
T 2x19_B 297 ------VQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDD 370 (963)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHH
T ss_pred ------HHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHH
Q ss_pred cch------hHHHHHHHhhCcHHHHHHHHHHhCCCCcchH----------------HHHHHHHHHHHhhChHHHHHHHHH
Q 002912 544 RHD------EHLINHFVKNNLLKPIVDAFVANGNRYNLLN----------------SAVLELFEYIRKENLKSLVKYIVD 601 (867)
Q Consensus 544 lkD------efy~ryiIk~nLf~PIl~~f~~ng~R~NLln----------------SA~LElfefIr~eNik~Li~hlve 601 (867)
..+ .-....+. ..+..++.+++.+..+..--. .++.+++..+..-.-+.++.++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~--~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~ 448 (963)
T 2x19_B 371 ILSFEAEKQAVYQQVYR--PVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYD 448 (963)
T ss_dssp HTTSCHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Q ss_pred hhHhhc
Q 002912 602 SFWNQL 607 (867)
Q Consensus 602 ~y~~~l 607 (867)
.....+
T Consensus 449 ~l~~~l 454 (963)
T 2x19_B 449 KLGRLL 454 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 90
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.89 E-value=2e+02 Score=27.26 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=48.7
Q ss_pred ccChHhHHHHHHHHHhc---CcHHHHHHHHcCCCcchhhhhhHHHHHH------------HhcChHHHHHHHHhc----C
Q 002912 340 SLQMVQQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILILF------------LNQDPNLLRSYVVRQ----E 400 (867)
Q Consensus 340 ~LQ~~~R~~lf~~Lv~~---GLf~vi~~~L~~~d~~ir~~atDILi~i------------iehdP~lvR~~i~~q----e 400 (867)
+=.+..|......|... +.++.+...|.+++..+|..++..|..+ +.+.-..+|...... .
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33455666666666654 4678888888888888887666554433 322222234333221 1
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 401 GIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 401 ~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
+...+..|++ ++.+.++.++.....+|..+
T Consensus 110 ~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 110 DERAVEPLIK-ALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHhCCCHHHHHHHHHHHHHc
Confidence 2223444444 33555555655555555555
No 91
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=45.81 E-value=3.3e+02 Score=29.73 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
+++-+...+.|+ +..-|+.++..|-+++.. +... .....+++.+...+.+++..+|..|...|..+.
T Consensus 165 l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~---~~~~--------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDD--TPMVRRAAASKLGEFAKV---LELD--------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT---SCHH--------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH---hcHH--------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 334444444544 345677777777666543 3221 123567888888899999999999999999888
Q ss_pred hcChH-HHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 386 NQDPN-LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 386 ehdP~-lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
+.-+. .... .++..+ ..++.+.+..++....++|-.+.
T Consensus 232 ~~~~~~~~~~--------~~~~~l-~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 232 QLLPQEDLEA--------LVMPTL-RQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHSCHHHHHH--------HTHHHH-HHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HhCCHHHHHH--------HHHHHH-HHHccCCCHHHHHHHHHHHHHHH
Confidence 76543 2222 133333 33457788888888888777765
No 92
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.71 E-value=2.5e+02 Score=27.88 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=10.1
Q ss_pred cHHHHHHHHcCCCcchhhhh
Q 002912 358 IFDIVTDALQSQDKKLVLTG 377 (867)
Q Consensus 358 Lf~vi~~~L~~~d~~ir~~a 377 (867)
+++.+..+|.++++.+|..+
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHH
Confidence 34444455555555555443
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=40.93 E-value=1.1e+02 Score=37.69 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCCCccHHhHHHHHHHHHHHHHhhh-ccC--hHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002912 315 RSPTTLEESKKNLVHFLHEFCGLSK-SLQ--MVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 387 (867)
Q Consensus 315 ~~~~~~~e~rrdlV~FL~E~c~lsK-~LQ--~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh 387 (867)
.+....++-|.+...||+.++...- .+- ++ ..| ..+++.+-+++++++..+..+|+.++..++..
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~-----~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAF-----KLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHH-----HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 3455567889999999999876432 111 11 112 23556667899999999999999998887763
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=40.25 E-value=1.6e+02 Score=29.97 Aligned_cols=192 Identities=10% Similarity=0.008 Sum_probs=104.9
Q ss_pred HHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChH-
Q 002912 312 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN- 390 (867)
Q Consensus 312 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~- 390 (867)
.++.+.+- ..|.+++.-|.+.+.-.+..... ...+..+ ..+...++-++.+.+..+...|.++|..++..-..
T Consensus 16 e~l~sk~W--K~R~eale~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 16 ERLTYKLW--KARLEAYKELNQLFRNSVGDISR--DDNIQIY--WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHTTCSSH--HHHHHHHHHHHHHHHTC------------CCT--TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HhcccCcH--HHHHHHHHHHHHHHhhCcccccc--hhHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 44444332 45778887666665433322211 1111101 23566778888999999999999999888874321
Q ss_pred H-HHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 002912 391 L-LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 469 (867)
Q Consensus 391 l-vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~ 469 (867)
. .+..... .-..++..|++-.+.+...+++....+++-.+...... ...++..+....
T Consensus 90 ~~~~~~~~~-~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----------------~~~~~e~l~~~l---- 148 (278)
T 4ffb_C 90 SLKNAHNIT-LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----------------ITQSVELVIPFF---- 148 (278)
T ss_dssp -CCHHHHHH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS----------------SHHHHHHHGGGG----
T ss_pred hcccchhHH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc----------------HHHHHHHHHHHH----
Confidence 1 1211110 01224455565555677777877666666555422211 122233333211
Q ss_pred cccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh-hHhhchHHHHHHHHhhccchhhHHHHHHHHHHH
Q 002912 470 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-NFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 541 (867)
Q Consensus 470 ~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~-~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i 541 (867)
....+.+-.-.+..|+-|++++....-. --....++.-+..++..+++-+|=+|+.++-.+
T Consensus 149 -----------~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 149 -----------EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp -----------GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -----------hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1123455566788888888887654321 111233445566788889999999999988764
No 95
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=37.82 E-value=4.3e+02 Score=28.78 Aligned_cols=190 Identities=10% Similarity=0.022 Sum_probs=107.1
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcC
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE 400 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehdP~lvR~~i~~qe 400 (867)
..-|..++.-|.++ +..+.+. -+..-+++++.....+++..+|.+++.++..+..+-+...+..
T Consensus 101 ~~vR~~a~~~L~~l---~~~~~~~--------~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~----- 164 (588)
T 1b3u_A 101 TVVRDKAVESLRAI---SHEHSPS--------DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE----- 164 (588)
T ss_dssp HHHHHHHHHHHHHH---HTTSCHH--------HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHH---HHHCCHH--------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH-----
Confidence 45566666555554 4444332 1223467788777788888999999999999988877554443
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcc
Q 002912 401 GIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRV 480 (867)
Q Consensus 401 ~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~ 480 (867)
++..|.. ++.|.++.++.+..++|-.+...-. . + .+....++.|..-+.+ ....+
T Consensus 165 ---l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~---~--~----~~~~~l~~~l~~~~~d------------~~~~v 219 (588)
T 1b3u_A 165 ---LRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLE---L--D----NVKSEIIPMFSNLASD------------EQDSV 219 (588)
T ss_dssp ---HHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSC---H--H----HHHHTHHHHHHHHHTC------------SCHHH
T ss_pred ---HHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhc---H--H----hHHHHHHHHHHHHhcC------------CcHHH
Confidence 3334443 4578899999999998887764311 1 1 1122333333322211 00112
Q ss_pred cCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhcc-chhHHHHHHHhhCcH
Q 002912 481 ESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR-HDEHLINHFVKNNLL 559 (867)
Q Consensus 481 ~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l-kDefy~ryiIk~nLf 559 (867)
+......+..+++.+. - ....+.++..+..++..++..++-+|++.+-.+... ..+. +...++
T Consensus 220 r~~a~~~l~~l~~~~~-------~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~ 283 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLP-------Q----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDLV 283 (588)
T ss_dssp HTTHHHHHHHHHHHSC-------H----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTHH
T ss_pred HHHHHHHHHHHHHhCC-------H----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHHH
Confidence 2222333344433221 0 112344566666777777777888999988887643 2332 234555
Q ss_pred HHHHHHHH
Q 002912 560 KPIVDAFV 567 (867)
Q Consensus 560 ~PIl~~f~ 567 (867)
..++.++.
T Consensus 284 ~~l~~~l~ 291 (588)
T 1b3u_A 284 PAFQNLMK 291 (588)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 55666553
No 96
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=35.95 E-value=4.7e+02 Score=28.64 Aligned_cols=237 Identities=15% Similarity=0.149 Sum_probs=141.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHhCCCCc--cHHhH--HHHHHHHHHHHHhhh-----ccChHhHHHHHHHHHhcCcHHHHHH
Q 002912 294 AYVVSLLKDDSTFIQELFARLRSPTT--LEESK--KNLVHFLHEFCGLSK-----SLQMVQQLRLFRDLMNEGIFDIVTD 364 (867)
Q Consensus 294 veIV~~Lq~d~~FL~eLF~~l~~~~~--~~e~r--rdlV~FL~E~c~lsK-----~LQ~~~R~~lf~~Lv~~GLf~vi~~ 364 (867)
.|+|..+. +++..+++++. ...+| .++-+-|.++=.+-- .-++.+-.+|...+.+.+++..+-.
T Consensus 13 ~elVr~l~-------d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~ 85 (341)
T 1upk_A 13 ADIVKNLK-------ESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVA 85 (341)
T ss_dssp HHHHHHHH-------HHHHHHHC---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 57777665 34555554321 11112 244444555433321 1234556688889999999999999
Q ss_pred HHcCCCcchhhhhhHHHHHHHhcChH---HHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchh
Q 002912 365 ALQSQDKKLVLTGTDILILFLNQDPN---LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 441 (867)
Q Consensus 365 ~L~~~d~~ir~~atDILi~iiehdP~---lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 441 (867)
.|..=+-..|-.++.|+..++-+.+. ..-.|+.++ .-++.+|+.+-= ++.+..-.-.+||..+--+.
T Consensus 86 ~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gYe---~~diAl~~G~mLRecir~e~----- 155 (341)
T 1upk_A 86 DLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYE---SPEIALNCGIMLRECIRHEP----- 155 (341)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGG---STTTHHHHHHHHHHHHTSHH-----
T ss_pred hcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHHHhhc---cchhHhHHHHHHHHHHHhHH-----
Confidence 99999989999999999998887753 233566652 335556555442 22332233344444432111
Q ss_pred hhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhHhhc--hHHHH
Q 002912 442 RDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN--NVVDK 518 (867)
Q Consensus 442 ~d~FL~-~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~--nll~r 518 (867)
+.. .+|..++-.+|+-+.. | .+ . ..+..+.-+=|||+ .|.--.-.|+-.| .+..+
T Consensus 156 ---la~~iL~~~~f~~fF~yv~~--~----------~F--d-iasDAf~TfkelLt----~Hk~lvaefL~~nyd~Ff~~ 213 (341)
T 1upk_A 156 ---LAKIILWSEQFYDFFRYVEM--S----------TF--D-IASDAFATFKDLLT----RHKLLSAEFLEQHYDRFFSE 213 (341)
T ss_dssp ---HHHHHHHSGGGGHHHHHTTC--S----------SH--H-HHHHHHHHHHHHHH----SSHHHHHHHHHHTHHHHHHH
T ss_pred ---HHHHHhccHHHHHHHHHhcC--C----------Cc--h-HHHHHHHHHHHHHh----ccHHHHHHHHHHhHHHHHHH
Confidence 111 2344444444442211 0 01 1 23456677778876 3443344444444 24567
Q ss_pred HHHHhhccchhhHHHHHHHHHHHhcc--chhHHHHHHHhhCcHHHHHHHHHHh
Q 002912 519 VLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 569 (867)
Q Consensus 519 Vl~Ll~~~~K~L~LaAlRF~R~iI~l--kDefy~ryiIk~nLf~PIl~~f~~n 569 (867)
.-.|+.+.+=.-+--+||++..++.- +=.+..|||-..+-++-+|.+|.+.
T Consensus 214 y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~ 266 (341)
T 1upk_A 214 YEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK 266 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc
Confidence 77899988888889999999998866 7788999999999999998877544
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=35.43 E-value=3.2e+02 Score=27.93 Aligned_cols=81 Identities=9% Similarity=0.031 Sum_probs=62.7
Q ss_pred chhhhhHhhchHHHHHHHHhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHHHHhCCCCcchHHHHHHH
Q 002912 504 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 583 (867)
Q Consensus 504 yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LEl 583 (867)
...|..|.....+..++.||++.+.-++-.|+.-+|++-..+++ .-..|++.+-+.|++.++...++ ..+...|+-=|
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~aL 119 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLL 119 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 44577888889999999999999999999999999998765554 66788899999999999976543 34555555444
Q ss_pred HHH
Q 002912 584 FEY 586 (867)
Q Consensus 584 fef 586 (867)
+..
T Consensus 120 ~nL 122 (233)
T 3tt9_A 120 WNL 122 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 98
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=34.99 E-value=2.8e+02 Score=32.33 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=72.3
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
++.|...|.+++ .+.+..+...|+.+|.- ....| ..+++.|.++.+-..|.+.+..++..|+-.|..|.-
T Consensus 50 i~~LV~~L~s~~--~~~q~~Aa~~L~~La~~----~~~~k----~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 50 LPEVIAMLGFRL--DAVKSNAAAYLQHLCYR----NDKVK----TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTT----CHHHH----HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHcC----ChHHH----HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 566666666543 45677788887766631 12223 345688999999999999999999999999998887
Q ss_pred c-ChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 387 Q-DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 387 h-dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
+ ++. -|..|.+..+ +..|+++|-...+.+++.+.+.+|..|
T Consensus 120 ~~~~~-nk~~I~~~Ga---Ip~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 120 GRDQD-NKIAIKNCDG---VPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp SSCHH-HHHHHHHTTH---HHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHcCC---HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6 444 4666665432 223344444444566666666555544
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=31.50 E-value=7.9e+02 Score=29.93 Aligned_cols=223 Identities=16% Similarity=0.242 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhcc-----ChHhHHHHHHHHHh--cCcHHHHHHHHcCC-Ccch
Q 002912 302 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-----QMVQQLRLFRDLMN--EGIFDIVTDALQSQ-DKKL 373 (867)
Q Consensus 302 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~L-----Q~~~R~~lf~~Lv~--~GLf~vi~~~L~~~-d~~i 373 (867)
.-++|+++|+..+. .+...+.-++.+|+-+|.-...+ ....|..+-..|.. ..+|.++..+|.+. +..+
T Consensus 135 ~Wp~ll~~L~~~~~---~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~ 211 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS---SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSL 211 (1049)
T ss_dssp TCTTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999886 23344556677777777443322 22222223222322 22566666666543 4567
Q ss_pred hhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCch---hhhHHHHHHH
Q 002912 374 VLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGA---QRDTIIEIFY 450 (867)
Q Consensus 374 r~~atDILi~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~---e~d~FL~~FY 450 (867)
+..+...+..++..-|.- +++. ..++..+++.++. ++.++...+++|..++.-. |... ....|+.+|
T Consensus 212 ~~~aL~~l~~~l~wi~~~---~~~~---~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~-~~~~~~~~~~~~~~l~- 281 (1049)
T 3m1i_C 212 IVATLESLLRYLHWIPYR---YIYE---TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK-IPQDNDLIKRQTVLFF- 281 (1049)
T ss_dssp HHHHHHHHHHHTTTSCTH---HHHS---SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC-CCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCCHH---HHhh---hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHH-
Confidence 777778777766644421 1222 4477887766664 6788888888888887542 2211 012344443
Q ss_pred HhhHHHHHHHHHhcCCCcc-cccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhhH-hh---chHHHHHHHHhhc
Q 002912 451 EKHLGQLIDVITASCPQEG-IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF-LL---NNVVDKVLLLTRR 525 (867)
Q Consensus 451 ~~~~~~L~~pL~~~~p~~~-~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i-l~---~nll~rVl~Ll~~ 525 (867)
...+..|-+- ..|... ....-.. ......+....+|++++-+...|.-.+...- .. ..++.-++..+..
T Consensus 282 ~~~l~~l~~s---i~p~~~~l~~~~~~---~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 282 QNTLQQIATS---VMPVTADLKATYAN---ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHH---TCCTTSCHHHHHHH---TCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHh---hCCCcccHHHHhcc---CCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC
Confidence 4444433220 111100 0000000 0011334556788888777766643321100 01 2334444444445
Q ss_pred cchhhHHHHHHHHHHHhc
Q 002912 526 REKYLVVAAVRFVRTILS 543 (867)
Q Consensus 526 ~~K~L~LaAlRF~R~iI~ 543 (867)
.+.-+...|+-|.-++..
T Consensus 356 ~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 356 EERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 566677788888877665
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.17 E-value=3e+02 Score=28.66 Aligned_cols=62 Identities=13% Similarity=0.356 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 381 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDIL 381 (867)
.||++++....+ .+.+-||-++.||.|.|. +..+.. --.++.+...|.++|+.+.-.++...
T Consensus 53 ~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~--~k~~l~-----------~~~l~~L~~Ll~d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 53 EFLESVLSLAHD--SNMEVRKQVVAFVEQVCK--VKVELL-----------PHVINVVSMLLRDNSAQVIKRVIQAC 114 (257)
T ss_dssp HHHHHHHGGGGC--SCHHHHHHHHHHHHHHHH--HCGGGH-----------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555554333 457889999999999992 111111 11345566666666655544444333
No 101
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=29.51 E-value=75 Score=30.17 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=60.0
Q ss_pred HHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCc--------HHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 312 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI--------FDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 312 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL--------f~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
.-|++.....---+++.-.|++||.+-|.--...=..++ .++.+.+ =+++.++|.+.-|+++.++.-+|..
T Consensus 24 vYL~~~~I~~~~E~~il~~i~ncCe~Ik~~Y~~~fn~l~-d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAtisLLSi 102 (145)
T 2jby_A 24 DYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLY-DIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLAS 102 (145)
T ss_dssp HHHTTCCCCSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 334443333223457788899999987765444444444 3333333 3577899999999999988888877
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 415 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 415 (867)
+|.-=- . ++..+...++-+|+.+..+
T Consensus 103 IIkKl~----k--I~h~d~~~~~evIn~isa~ 128 (145)
T 2jby_A 103 VIKKLN----K--IQHTDAAMFSEVIDGIVAE 128 (145)
T ss_dssp HHHHHH----T--TSCCCGGGGHHHHHHHSSS
T ss_pred HHHHHH----H--hhccHHHHHHHHHHHHhhh
Confidence 764211 1 1234566777777777543
No 102
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=29.32 E-value=2.6e+02 Score=27.05 Aligned_cols=109 Identities=6% Similarity=0.025 Sum_probs=71.2
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++..+..++....+. ...+-++|.+.+.-....|... .+|..-|++.++.+...|..+|=+|+.
T Consensus 16 ~~~~IekATs~~~~~~D----w~~~leicD~I~~~~~~~keA~----------ral~krl~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTED----WSLIMDICDKVGSTPNGAKDCL----------KAIMKRVNHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp THHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSSSHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566666665432222 2334578888776554455443 456666788899998999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 432 (867)
+.-..++.-+.+ ..+++.|++++-...++.++..+.+.|..+=
T Consensus 82 NcG~~Fh~evas---~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 82 NCGKIFHLEVCS---RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HTCHHHHHHHTS---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhh---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 866656654433 3477778776644467778877777766664
No 103
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=28.42 E-value=4.1e+02 Score=28.21 Aligned_cols=105 Identities=14% Similarity=0.332 Sum_probs=69.0
Q ss_pred HhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH--HHhhcCchhhhhHhhchHHHHHHHHhh--cc
Q 002912 451 EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR--RR 526 (867)
Q Consensus 451 ~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F--cv~~H~yriK~~il~~nll~rVl~Ll~--~~ 526 (867)
-..+..|.+-+.+-.|.-.. + ..++..=..+|-.|.- ||-.|+- .|..|++-++...+--.++ ++
T Consensus 43 ~Gtia~LLQEIisiYp~lsp-----p-----~Lt~~~SnRVcnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk 111 (268)
T 2fv2_A 43 FGTIAALLQEIVNIYPSINP-----P-----TLTAHQSNRVCNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSK 111 (268)
T ss_dssp TTHHHHHHHHHHHTGGGBTT-----B-----CCCHHHHHHHHHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCC
T ss_pred cCHHHHHHHHHHHHcccCCC-----c-----ccCHHHHhHHHHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccC
Confidence 34466777766664332110 0 1122333445554443 7777875 5678888888766555443 22
Q ss_pred ---chhhHHHHHHHHHHHhccchhHHHHHHHhhCcHHHHHHHH
Q 002912 527 ---EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 566 (867)
Q Consensus 527 ---~K~L~LaAlRF~R~iI~lkDefy~ryiIk~nLf~PIl~~f 566 (867)
.-+|+|++|-.+-++|...|.-...|+...+++...+..+
T Consensus 112 ~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 112 TRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred CCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 3599999999999999999999999999999766555544
No 104
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.32 E-value=3.7e+02 Score=26.21 Aligned_cols=109 Identities=16% Similarity=0.249 Sum_probs=73.9
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++..+..++....+.+ ..+-++|.+.++-....|... .+|..-|++.++.+...|..+|=+|+.
T Consensus 14 ~~~~IekATs~~l~~~Dw----~~ileicD~I~~~~~~~k~A~----------ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDW----EYIIGFCDQINKELEGPQIAV----------RLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHHHHHHHTCTTCSSCCH----HHHHHHHHHHHHSTTHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCH----HHHHHHHHHHHcCCccHHHHH----------HHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556666666655433322 345588888776555555443 567777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 432 (867)
+.-..++.-+.+ ..+++.|++++-. ..+..++..+.+.|..+=
T Consensus 80 NCG~~Fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 80 NCGRRFHNEVGK---FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHhh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 876666655543 4588888886631 245677777777777664
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.00 E-value=2.6e+02 Score=28.07 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++.....++....+. ...+-|+|.+.+.-+...|.. ..+|..-|++.++.+...|..+|-+++.
T Consensus 6 ~~~~ie~AT~~~~~~~d----w~~~leicd~i~~~~~~~k~a----------~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPD----WPSILLICDEINQKDVTPKNA----------FAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp HHHHHHHHHCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHhhcCCCcCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44555555555433222 224566887776544344443 2455666788999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 433 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 433 (867)
+--..++..+.+ ..+++.|++++-...+..++..+.+.+..+-+
T Consensus 72 NcG~~f~~eva~---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 72 NCGAPVHEEVFT---KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HSHHHHHHHHSS---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 876666665543 33888888766556778888888888777754
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=27.16 E-value=4.3e+02 Score=27.73 Aligned_cols=102 Identities=9% Similarity=0.148 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
..||+-|..++.++.. .-|..+...|+.+|.++ ++++ +++.+-.++++.+..+|....+.+..
T Consensus 131 ~~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v~----~~~~-----------v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDVV----GPLK-----------MTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHHH----CHHH-----------HHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHHC----CHHH-----------HHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3688888888876652 33555555667776653 3333 34445568899999999999999988
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 002912 384 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 429 (867)
Q Consensus 384 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 429 (867)
+++..-.. ..+ .-+|-..++ .++.|+|.+++.....++.
T Consensus 194 li~~~G~~-----~~~-~l~~~~~ia-~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 194 YITNAGIS-----PLK-SLSVEKTVA-PFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHCSG-----GGG-GGCHHHHHG-GGGGCSSHHHHHHHHHHHH
T ss_pred HHHhcCCC-----ccc-cccchHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 87643211 010 011113333 4678899999876555443
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=26.67 E-value=9.9e+02 Score=29.54 Aligned_cols=289 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcch
Q 002912 295 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKL 373 (867)
Q Consensus 295 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~i 373 (867)
+.++-+|.++.++.-+...+ ....+..-|.=+...|+..+... ..+.+.+|..+-..|++.-+-..-....-...+.+
T Consensus 38 ~~L~~~q~sp~aw~~~~~iL-~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i 116 (1023)
T 4hat_C 38 EILTKFQDNPDAWQKADQIL-QFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNL 116 (1023)
T ss_dssp HHHHHHHHCTTGGGGHHHHH-HHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHH
T ss_pred HHHHHHHcCccHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHH
Q ss_pred hhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh------cCCCCCCchhhhHHH
Q 002912 374 VLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL------LDSYTLSGAQRDTII 446 (867)
Q Consensus 374 r~~atDILi~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L------LDp~~m~~~e~d~FL 446 (867)
+..-+.+++.|+-++ |. .=..++.-|+..+ ..++....-++.+|+.| +..+.+....+..+.
T Consensus 117 ~nKLa~~la~I~~~~~p~---------~Wp~~l~dL~~~l--~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk 185 (1023)
T 4hat_C 117 INKSDLTLVQILKQEWPQ---------NWPEFIPELIGSS--SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTT---------TCTTHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChh---------hchHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-hhhHhhchHHHHHH-HHhh
Q 002912 447 EIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLNNVVDKVL-LLTR 524 (867)
Q Consensus 447 ~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~nll~rVl-~Ll~ 524 (867)
+.+-.+ ++.++.-+... -.....+++...+++.|.-++. .+ -.++.+.+++..+. .++.
T Consensus 186 ~~l~~~-~~~I~~ll~~i--------------L~~~~~~~l~~~~L~~l~s~l~----WI~i~~i~~~~ll~~l~~~~L~ 246 (1023)
T 4hat_C 186 NSMSKE-FEQIFKLCFQV--------------LEQGASSSLIVATLESLLRYLH----WIPYRYIYETNILELLSTKFMT 246 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHH--------------HHHCSSCHHHHHHHHHHHHHTT----TSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHHH-HHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHHHH----hCCHHHhcchhHHHHHHHHHcC
Q ss_pred ccchhhHHHHHHHHHHHhccc---hh-HHHHHHHhhCcHHHHHHHH-HHhCCCCcchHHHHHHH----HHHHHhhChHHH
Q 002912 525 RREKYLVVAAVRFVRTILSRH---DE-HLINHFVKNNLLKPIVDAF-VANGNRYNLLNSAVLEL----FEYIRKENLKSL 595 (867)
Q Consensus 525 ~~~K~L~LaAlRF~R~iI~lk---De-fy~ryiIk~nLf~PIl~~f-~~ng~R~NLlnSA~LEl----fefIr~eNik~L 595 (867)
..+ ++.+|+.|+-.+++.+ |. -|...+++ +|.-++..+ ..-.++.--+..+..+- .+|+ +|+-.+
T Consensus 247 ~~~--~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~--lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~--~~l~~l 320 (1023)
T 4hat_C 247 SPD--TRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANGNDQSFL--QDLAMF 320 (1023)
T ss_dssp SHH--HHHHHHHHHHHHHTSCCCSSCHHHHHHHHH--HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHH--HHHHHH
T ss_pred CHH--HHHHHHHHHHHHHccccCCchHHHHHHHHH--HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHH--HHHHHH
Q ss_pred HHHHHHhhHhhcccccchhhHHHHHHhh
Q 002912 596 VKYIVDSFWNQLVNFEYLASLHSFKVKY 623 (867)
Q Consensus 596 i~hlve~y~~~l~~i~yv~tF~~L~~ry 623 (867)
..-+.++|...+++- +.|+.+....
T Consensus 321 ~~~~~e~~~~li~~~---~~~~~~l~~~ 345 (1023)
T 4hat_C 321 LTTYLARNRALLESD---ESLRELLLNA 345 (1023)
T ss_dssp HHHHHHHHGGGGTSC---GGGHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---cchhHHHHHH
No 108
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.48 E-value=2.5e+02 Score=28.50 Aligned_cols=111 Identities=9% Similarity=0.155 Sum_probs=74.1
Q ss_pred HHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002912 306 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 385 (867)
Q Consensus 306 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ii 385 (867)
-|.++..+..++....+. ...+-|+|.+.+.-....|.+ ..+|..-|++.++.+...|..+|-+++
T Consensus 8 ~~~~~i~kAT~~~~~~~d----w~~ileicD~I~~~~~~~k~a----------~ral~krl~~~n~~v~l~aL~LLe~~v 73 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETD----WESILQICDLIRQGDTQAKYA----------VNSIKKKVNDKNPHVALYALEVMESVV 73 (226)
T ss_dssp HHHHHHHHHTCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 366777777776643332 234456777765433334444 346677788999999999999998888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 002912 386 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 433 (867)
Q Consensus 386 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 433 (867)
.+--..++.-|.+ ..+++.|++++=...+..++..+.+.|..+=+
T Consensus 74 kNcG~~f~~eias---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 74 KNCGQTVHDEVAN---KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHCHHHHHHHSS---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8776666655544 34677777766445677888888888877743
No 109
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.67 E-value=5.9e+02 Score=27.82 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHhhCCHHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc-----CcH------HHHHHHH
Q 002912 298 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE-----GIF------DIVTDAL 366 (867)
Q Consensus 298 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~-----GLf------~vi~~~L 366 (867)
+++|+|.+|..|... ++++.-|=..+.-+..=-..-=..-|..|+.+ |++ .-|...+
T Consensus 144 ~~~q~D~~Fa~EFI~------------~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 144 QIFQEDKDLVPEFVH------------SEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHTCTTHHHHHHH------------TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHhhcchHHHHHHHH------------hccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Q ss_pred cCCCcchhhhhhHHHHHHHhcChHHHHHHHHh------cCCcchHHHHHHHHh--ccCChhhHHHHHHHHHHhcCCCCCC
Q 002912 367 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVR------QEGIPLLGLLVKGMI--TDFGEDMHCQFLEILRSLLDSYTLS 438 (867)
Q Consensus 367 ~~~d~~ir~~atDILi~iiehdP~lvR~~i~~------qe~~~Ll~~Li~~ll--~d~d~glk~Ql~eaLk~LLDp~~m~ 438 (867)
.+.+..|...|..||..+++++++.---..-. ..+.+++..|+++|- ...|..++.-.+-.|..+|..-. +
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap-d 290 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP-D 290 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS-S
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC-C
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHh
Q 002912 439 GAQRDTIIEIFYEKHLGQLIDVITA 463 (867)
Q Consensus 439 ~~e~d~FL~~FY~~~~~~L~~pL~~ 463 (867)
...+.++.+.+=...+...+...+.
T Consensus 291 ~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 291 QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHh
No 110
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.95 E-value=3.7e+02 Score=25.26 Aligned_cols=106 Identities=6% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002912 308 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 387 (867)
Q Consensus 308 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh 387 (867)
.++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|-+|+.+
T Consensus 7 d~~iekAT~~~l~~~d----w~~ileicD~I~~~~~~~k~a----------~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED----WGLILDICDKVGQSRTGPKDC----------LRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHTCTTSSSCC----HHHHHHHHHHHTTSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCcCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3455556555433222 445678898887655444544 34566667888888888888888888887
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 002912 388 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 431 (867)
Q Consensus 388 dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 431 (867)
--..++.-+.+ ..+++.|++++ ...++.++..+.+.+..+
T Consensus 73 cG~~f~~evas---~~Fl~el~~l~-~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 73 CGKIFHLEVCS---RDFASEVSNVL-NKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp SCHHHHHHHSS---HHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 76655544433 33677776644 556777777777776655
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.75 E-value=1e+03 Score=28.34 Aligned_cols=272 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh----------CCCC----ccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH---
Q 002912 304 STFIQELFARL----------RSPT----TLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL--- 366 (867)
Q Consensus 304 ~~FL~eLF~~l----------~~~~----~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L--- 366 (867)
..+++-+|. + ++.. .+++-|..++..|.++...... ..+..++..++ .+++.+.....
T Consensus 228 ~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~---~~~~~~~~~l~-~~~~~~~~~~~~~~ 302 (971)
T 2x1g_F 228 VTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC---HNYPKTAFVLI-KMFLDSLSEITKTE 302 (971)
T ss_dssp HHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG---GGCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc---cccHHHHHHHH-HHHHHhHHHHHHHH
Q ss_pred cCCCc---chhhhhhHHHHHHHhcChHHHH-----------HHHHhcCCcchHHHHHHHHhc----cCChhhHHHHHHHH
Q 002912 367 QSQDK---KLVLTGTDILILFLNQDPNLLR-----------SYVVRQEGIPLLGLLVKGMIT----DFGEDMHCQFLEIL 428 (867)
Q Consensus 367 ~~~d~---~ir~~atDILi~iiehdP~lvR-----------~~i~~qe~~~Ll~~Li~~ll~----d~d~glk~Ql~eaL 428 (867)
...|. ......++++..+.+..+.++. .++.. ++..|...+-. ..+..+..+..+.+
T Consensus 303 ~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~l~~ll~~~~~~~~~~~~~~v~~~~l~fw 377 (971)
T 2x1g_F 303 WKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHR-----IVQEILHCTDKPGIYPVEESCSTMALAFW 377 (971)
T ss_dssp SSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHH-----HHHHHHHHHHCSSCTTTTCTTHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHH-----HHHHHHHHHcCCCCCCcchhhhHHHHHHH
Q ss_pred HHhcC-CCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcH----------------------
Q 002912 429 RSLLD-SYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKP---------------------- 485 (867)
Q Consensus 429 k~LLD-p~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~---------------------- 485 (867)
-.|.+ -..+....+..-....|..++..|+..++. ...+...
T Consensus 378 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------------~~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 378 YMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR---------------KSEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp HHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH---------------HTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH---------------HhcCCCcccccccCHhHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHHHHhh-----cCchhhhhHhh-------------chHHHHHHHHh-----hccchhh
Q 002912 486 ------------EILSNICELLCFCVLH-----HPYRIKCNFLL-------------NNVVDKVLLLT-----RRREKYL 530 (867)
Q Consensus 486 ------------~ll~~l~ELL~Fcv~~-----H~yriK~~il~-------------~nll~rVl~Ll-----~~~~K~L 530 (867)
.++..+++.+.=.+.+ -..+-+.-.+. ...+.+++.++ ...+..+
T Consensus 443 ~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~v 522 (971)
T 2x1g_F 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKL 522 (971)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHH
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHhh-CcHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh--hChHHHHHHHHHhhHhhc
Q 002912 531 VVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQL 607 (867)
Q Consensus 531 ~LaAlRF~R~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~--eNik~Li~hlve~y~~~l 607 (867)
+-+|+.++-+ |..++-++ ..+.||+..+....+ ..+-..||.-|-.+++. +.+.+.+..|++++.+.+
T Consensus 523 r~~a~~~l~~--------~~~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 523 LGTALETMGS--------YCNWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHH--------THHHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q ss_pred cc
Q 002912 608 VN 609 (867)
Q Consensus 608 ~~ 609 (867)
.+
T Consensus 594 ~~ 595 (971)
T 2x1g_F 594 NT 595 (971)
T ss_dssp HS
T ss_pred cC
No 112
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.55 E-value=5.1e+02 Score=24.72 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002912 307 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 386 (867)
Q Consensus 307 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iie 386 (867)
+.++..+..++....+. ...+-++|.+.+.-+...|... .+|..-|++.++.+...|..+|-+|+.
T Consensus 12 ~~~~IekATs~~l~~~d----w~~ileicD~I~~~~~~pk~a~----------ral~krl~~~n~~v~l~AL~LLe~cvk 77 (149)
T 3g2s_A 12 LEARINRATNPLNKELD----WASINGFCEQLNEDFEGPPLAT----------RLLAHKIQSPQEWEAIQALTVLETCMK 77 (149)
T ss_dssp HHHHHHHHSCTTCSSCC----HHHHHHHHHHGGGSSSHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCCcHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566666666543322 3456788988776555555442 466667788999998889999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhhHHHHHHHHHHhc
Q 002912 387 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 387 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 432 (867)
.--..++.-+.+ ..+++.|++.+-. ..++.++..+.+.|..+=
T Consensus 78 NCG~~fh~eias---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 78 SCGKRFHDEVGK---FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HCCHHHHHHHTS---HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhh---HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 887766655544 3478888876642 356777887777777664
No 113
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.28 E-value=3.8e+02 Score=25.46 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=70.2
Q ss_pred HHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002912 308 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 387 (867)
Q Consensus 308 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iieh 387 (867)
.++..+..++....+.+ ..+-++|.+.+.-+...|... .+|..-|++.++.+...|..+|=+|+.+
T Consensus 3 ~~~iekATs~~l~~~dw----~~~leicD~I~~~~~~~k~a~----------rai~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 3 ELWLNKATDPSMSEQDW----SAIQNFCEQVNTDPNGPTHAP----------WLLAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHCTTCSSCCH----HHHHHHHHHHHHSSHHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCH----HHHHHHHHHHHcCCccHHHHH----------HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34445555544332222 334588888776555555542 5666677899999999999999999988
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhhHHHHHHHHHHhc
Q 002912 388 DPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 432 (867)
Q Consensus 388 dP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 432 (867)
--..++..+.+ ..+++.|++.+-. ..+..++..+.+.|..+=
T Consensus 69 CG~~fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 69 CGEKFHSEVAK---FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp SCHHHHHHHTS---HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 76666655544 3588888775432 146677877777776663
No 114
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.26 E-value=4.8e+02 Score=24.31 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002912 304 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 383 (867)
Q Consensus 304 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~ 383 (867)
+.-...++..+.+++ ...|..++..|.++. ..+.++.+...|.+++..+|..++..|..
T Consensus 13 ~~~~~~~i~~L~~~~--~~vr~~A~~~L~~~~-------------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS--YYVRRAAAYALGKIG-------------------DERAVEPLIKALKDEDAWVRRAAADALGQ 71 (201)
T ss_dssp HHHHHHHHHHTTCSC--HHHHHHHHHHHHHHC-------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCCC--HHHHHHHHHHHHhcC-------------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344566677777654 345666665554321 12445666677778888777766655543
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.14 E-value=5.4e+02 Score=28.52 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCccHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002912 305 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 384 (867)
Q Consensus 305 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~i 384 (867)
.||.++++.-.++ +.+-|+-++.||.|-|.- ..+.. --++++|...|.++|+.+.-.++....++
T Consensus 63 ~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~--~~el~-----------~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK--SIEVRKFVIGFIEEACKR--DIELL-----------LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHH--CGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5777777655554 467899999999999952 11110 11345566667767766555444444443
Q ss_pred HhcChHHHH
Q 002912 385 LNQDPNLLR 393 (867)
Q Consensus 385 iehdP~lvR 393 (867)
- |..+|
T Consensus 128 Y---pl~f~ 133 (386)
T 3o2t_A 128 Y---KVALQ 133 (386)
T ss_dssp H---HHHHH
T ss_pred H---HHHHH
Confidence 2 55555
No 116
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.84 E-value=6.4e+02 Score=27.54 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=81.7
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHH----HHHH
Q 002912 321 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD-PNL----LRSY 395 (867)
Q Consensus 321 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GLf~vi~~~L~~~d~~ir~~atDILi~iiehd-P~l----vR~~ 395 (867)
.....++++-|+.+++. +..+-.-+-....+..|..+|....+.+|..+++||..+.... |.- |-+.
T Consensus 134 ~~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~A 205 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA 205 (383)
T ss_dssp HHHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHH
Confidence 34455667767666553 2333333444567889999999999999999999998877665 332 2222
Q ss_pred HHh---cCCcchHHHHHHHHhccCChhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 002912 396 VVR---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 461 (867)
Q Consensus 396 i~~---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL 461 (867)
+-. ..+..-+..+++.|-...+..++...+-.+..|+.... +...|-..-.-|..-.+...+..|
T Consensus 206 l~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 206 MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCChHHHHHHH
Confidence 211 12334556677777655677888888888888987542 112333334445555666666554
Done!