Query 002913
Match_columns 866
No_of_seqs 213 out of 333
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 13:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347 Sec5 subunit of exocys 100.0 3E-101 6E-106 886.3 41.3 761 30-854 2-800 (934)
2 PF15469 Sec5: Exocyst complex 100.0 2.9E-39 6.4E-44 326.7 19.8 179 239-417 1-182 (182)
3 KOG2346 Uncharacterized conser 100.0 2.4E-28 5.1E-33 269.8 17.0 214 198-416 25-240 (636)
4 PF04124 Dor1: Dor1-like famil 99.6 1.7E-12 3.7E-17 144.0 35.4 204 217-426 5-211 (338)
5 KOG2069 Golgi transport comple 99.2 1.5E-09 3.4E-14 124.6 20.9 213 203-428 18-237 (581)
6 PF08700 Vps51: Vps51/Vps67; 98.9 3.5E-09 7.6E-14 95.0 7.3 71 201-271 1-71 (87)
7 PF10475 DUF2450: Protein of u 98.3 0.00015 3.2E-09 79.6 22.6 197 203-404 10-211 (291)
8 PF04100 Vps53_N: Vps53-like, 97.9 0.0026 5.6E-08 72.6 24.4 162 204-383 2-181 (383)
9 KOG2033 Low density lipoprotei 97.6 0.0045 9.8E-08 73.4 21.2 213 215-442 13-252 (863)
10 PF06248 Zw10: Centromere/kine 97.6 0.026 5.7E-07 67.8 27.0 161 218-385 6-179 (593)
11 PF10392 COG5: Golgi transport 97.3 0.0019 4.1E-08 63.2 10.8 113 202-326 4-128 (132)
12 PF06148 COG2: COG (conserved 96.8 0.0013 2.8E-08 64.1 4.7 67 200-269 7-73 (133)
13 PF04048 Sec8_exocyst: Sec8 ex 96.1 0.063 1.4E-06 53.2 11.5 124 203-332 18-141 (142)
14 KOG3691 Exocyst complex subuni 95.9 0.18 3.9E-06 61.9 15.8 147 218-369 42-190 (982)
15 KOG2180 Late Golgi protein sor 95.1 4.6 0.0001 49.3 23.7 171 203-385 16-198 (793)
16 KOG2307 Low density lipoprotei 94.4 2.2 4.8E-05 50.6 18.2 194 200-405 27-235 (705)
17 PF10191 COG7: Golgi complex c 93.5 27 0.00059 43.9 39.1 219 200-427 4-237 (766)
18 KOG2347 Sec5 subunit of exocys 88.1 5.3 0.00012 49.7 12.8 188 192-391 76-273 (934)
19 KOG2176 Exocyst complex, subun 82.0 1.5E+02 0.0033 37.3 32.9 121 223-348 45-165 (800)
20 PF04129 Vps52: Vps52 / Sac2 f 78.3 1.1E+02 0.0024 36.8 18.3 156 282-453 47-217 (508)
21 KOG4424 Predicted Rho/Rac guan 77.3 31 0.00067 41.7 12.9 144 280-444 108-254 (623)
22 PF06786 UPF0253: Uncharacteri 60.4 18 0.00039 31.5 4.7 45 568-614 1-45 (66)
23 cd07651 F-BAR_PombeCdc15_like 57.6 2.7E+02 0.0058 29.8 15.5 39 220-258 61-99 (236)
24 KOG2115 Vacuolar sorting prote 55.8 4.2E+02 0.0092 34.1 17.0 128 251-383 268-398 (951)
25 PRK04964 hypothetical protein; 54.6 26 0.00057 30.5 4.8 46 568-615 1-46 (66)
26 PF06008 Laminin_I: Laminin Do 53.3 3.3E+02 0.0072 29.6 17.6 23 356-378 120-142 (264)
27 KOG0412 Golgi transport comple 50.6 6.2E+02 0.013 31.9 21.8 203 203-416 15-238 (773)
28 KOG0553 TPR repeat-containing 50.4 1.2E+02 0.0025 34.3 10.2 89 302-406 76-181 (304)
29 PF09726 Macoilin: Transmembra 48.3 91 0.002 39.0 10.1 107 221-334 547-656 (697)
30 cd07657 F-BAR_Fes_Fer The F-BA 46.6 4.2E+02 0.009 28.8 15.0 50 220-269 66-115 (237)
31 KOG4603 TBP-1 interacting prot 45.6 2E+02 0.0043 30.1 10.1 86 227-350 80-165 (201)
32 KOG4648 Uncharacterized conser 44.3 2.4E+02 0.0051 32.8 11.5 75 332-406 106-197 (536)
33 KOG0972 Huntingtin interacting 43.6 2.7E+02 0.0058 31.5 11.5 82 200-291 238-319 (384)
34 COG2904 Uncharacterized protei 41.7 22 0.00048 34.9 2.8 73 149-226 28-112 (137)
35 KOG1945 Protein phosphatase 1 41.3 2.8E+02 0.006 32.1 11.5 77 88-169 146-231 (377)
36 cd07686 F-BAR_Fer The F-BAR (F 40.1 5.3E+02 0.011 28.2 14.8 50 220-269 66-115 (234)
37 KOG1925 Rac1 GTPase effector F 39.0 5.1E+02 0.011 31.4 13.3 68 365-432 517-596 (817)
38 PF10158 LOH1CR12: Tumour supp 35.7 2.2E+02 0.0047 28.4 8.7 68 203-270 21-99 (131)
39 cd07673 F-BAR_FCHO2 The F-BAR 35.3 5.2E+02 0.011 28.5 12.5 49 336-384 170-218 (269)
40 PF10516 SHNi-TPR: SHNi-TPR; 34.4 32 0.0007 27.0 2.1 21 333-353 11-31 (38)
41 KOG2568 Predicted membrane pro 33.4 30 0.00064 41.5 2.6 65 46-110 446-516 (518)
42 PF03670 UPF0184: Uncharacteri 32.7 47 0.001 30.6 3.2 44 204-250 21-64 (83)
43 KOG2398 Predicted proline-seri 32.6 1.1E+03 0.023 29.5 15.5 183 220-416 48-235 (611)
44 cd07653 F-BAR_CIP4-like The F- 32.4 6.4E+02 0.014 26.9 13.6 42 219-260 65-106 (251)
45 cd07649 F-BAR_GAS7 The F-BAR ( 32.1 6.9E+02 0.015 27.1 13.2 47 337-383 168-214 (233)
46 cd07674 F-BAR_FCHO1 The F-BAR 31.1 7.3E+02 0.016 27.1 16.7 45 338-382 165-209 (261)
47 PF04100 Vps53_N: Vps53-like, 29.5 7.4E+02 0.016 28.8 13.0 22 307-328 137-158 (383)
48 PRK10548 flagellar biosynthesi 28.8 4E+02 0.0087 26.2 9.1 33 313-345 4-36 (121)
49 KOG0780 Signal recognition par 28.3 1.3E+02 0.0027 35.4 6.3 58 203-270 282-339 (483)
50 cd07648 F-BAR_FCHO The F-BAR ( 28.3 7.7E+02 0.017 26.6 12.3 47 337-383 164-210 (261)
51 PF02809 UIM: Ubiquitin intera 27.0 47 0.001 22.1 1.6 12 5-16 1-12 (18)
52 PF02074 Peptidase_M32: Carbox 26.6 3.2E+02 0.007 33.0 9.6 129 259-405 84-222 (494)
53 smart00726 UIM Ubiquitin-inter 26.3 48 0.001 24.1 1.7 12 6-17 1-12 (26)
54 PF04212 MIT: MIT (microtubule 26.2 1.4E+02 0.003 25.7 4.9 18 336-353 18-35 (69)
55 smart00806 AIP3 Actin interact 24.4 1.2E+03 0.026 27.8 13.2 113 246-373 170-293 (426)
56 KOG4514 Uncharacterized conser 23.9 5.1E+02 0.011 27.4 9.1 20 299-318 200-219 (222)
57 cd02683 MIT_1 MIT: domain cont 23.8 1.8E+02 0.0038 26.2 5.3 47 335-381 18-72 (77)
58 PF10392 COG5: Golgi transport 23.7 4.8E+02 0.01 25.5 8.8 95 218-317 32-126 (132)
59 PRK04778 septation ring format 23.7 1E+03 0.022 29.0 13.4 82 296-379 409-492 (569)
60 KOG1595 CCCH-type Zn-finger pr 23.3 46 0.00099 39.9 1.8 69 795-863 50-131 (528)
61 PF07393 Sec10: Exocyst comple 23.0 1.1E+03 0.024 29.4 13.8 135 282-416 11-154 (710)
62 PF00515 TPR_1: Tetratricopept 22.4 75 0.0016 22.8 2.2 21 333-353 11-31 (34)
63 KOG1924 RhoA GTPase effector D 22.4 66 0.0014 40.3 2.9 20 209-230 705-724 (1102)
64 PF04124 Dor1: Dor1-like famil 21.9 1.2E+03 0.026 26.4 15.7 38 312-349 155-192 (338)
65 KOG1656 Protein involved in gl 21.7 1.1E+02 0.0024 32.7 4.0 18 3-21 155-172 (221)
66 PRK04778 septation ring format 21.4 1.5E+03 0.033 27.5 17.4 98 249-352 96-206 (569)
67 KOG1924 RhoA GTPase effector D 21.2 79 0.0017 39.7 3.2 11 106-116 644-654 (1102)
68 PF13870 DUF4201: Domain of un 21.2 8.8E+02 0.019 24.7 11.8 108 218-334 41-148 (177)
69 PF13176 TPR_7: Tetratricopept 21.0 83 0.0018 23.5 2.2 20 333-352 9-28 (36)
70 KOG4451 Uncharacterized conser 20.4 2.2E+02 0.0048 30.9 6.0 83 232-323 49-131 (286)
71 PF01544 CorA: CorA-like Mg2+ 20.2 5.7E+02 0.012 27.2 9.4 40 202-242 102-141 (292)
72 smart00745 MIT Microtubule Int 20.2 2.1E+02 0.0046 24.9 5.0 47 336-382 21-75 (77)
73 PRK03947 prefoldin subunit alp 20.1 8.2E+02 0.018 23.9 9.8 45 220-265 7-51 (140)
74 cd07671 F-BAR_PSTPIP1 The F-BA 20.1 1.1E+03 0.025 25.5 15.5 64 336-399 173-239 (242)
75 cd02681 MIT_calpain7_1 MIT: do 20.0 2.2E+02 0.0047 25.7 5.1 45 335-379 18-71 (76)
No 1
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-101 Score=886.28 Aligned_cols=761 Identities=40% Similarity=0.574 Sum_probs=621.2
Q ss_pred CCCCCcccccCCCCCcccCCCC-------CCCCCCCcccccceeeeecccCCcccccch---------hhhh-hcccCCc
Q 002913 30 PRKPVTNYVQQPKSAATQKGGR-------SQGKKYEEEEESEVEMLSISSGDEEVSRDR---------GLAA-KNRARGR 92 (866)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~ 92 (866)
.++||.+.+|||+++...++.. -+++.+. +|+|||++|+|+++||+..+.+ ++++ +.+|+++
T Consensus 2 ~~np~~~~~q~p~vtg~s~~e~~p~t~~~ir~e~l~-~~~sd~~~l~i~g~D~lls~~~~s~~~~~~~~g~a~~~~G~~r 80 (934)
T KOG2347|consen 2 TRNPVARLAQQPRVTGLSPNEGGPGTAVTIRKEFLG-NDESDVIGLSICGGDELLSAERKSPNGIIARVGLAKREKGDIR 80 (934)
T ss_pred CCCchhhccCCccccCCCCCCCCCCcceeecCCccC-cchhhHhhhhhcccchhhhhhcCCCCccccccccccCCCCceE
Confidence 4789999999998885433333 3346666 9999999999999999876664 2223 3388888
Q ss_pred cCCCCCCCCCCCCccccccHHHHHHHHHHHhhhcCcccccccccccchhhcc-cccccccccCCCCCCCCCCCCCc-cch
Q 002913 93 RDDDGTWDGDEPNCWKRVDEAELARRVREMRETRTAPVAQKYEKKPSMAAGI-KGFSTLQSFPRGMECIDPLGLGI-IDN 170 (866)
Q Consensus 93 ~~~~~~~~~~~p~~w~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~DPLGl~~-~~~ 170 (866)
..++..|+|-.|.+|.+|+.+++. +++|+..+++| +.++.++. .+.+ ++...+|..|+++...+|+-..+ ++
T Consensus 81 ~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~--~~~~~~~~-~~~~~~~~t~l~~~~~l~~~i~~~k~~~~~d- 154 (934)
T KOG2347|consen 81 VTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE--QQDQRKVP-GRLKGVALTSLQSEPPLGECIEPLKLKINED- 154 (934)
T ss_pred EeeccCccccCchhhhhhhHhhhc--cchhhhhhccc--cccccccc-ccccccCCcccccCCCcccccCchhhcchhh-
Confidence 999999999999999999999998 99999999888 66665544 3322 37777777776666666665543 33
Q ss_pred hhhhhhccCCCCCCCCCcCCCCcccccccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 002913 171 KTLRLITDSSGSTPKSDRDNVDNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (866)
Q Consensus 171 ~~L~~i~~~~~~~P~~~~~~~~p~lr~~~disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF 250 (866)
+..++|.. .+|+.+++|+|+|||.++|.++||+||+.|...|++..+..++.-+.||++||
T Consensus 155 -----------------~~~lfp~~--~~Dl~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~ 215 (934)
T KOG2347|consen 155 -----------------NKTLFPIT--SVDLRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNF 215 (934)
T ss_pred -----------------hhhhcccc--ccccccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcch
Confidence 33456665 57899999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 002913 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (866)
Q Consensus 251 ~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L 330 (866)
+.||.|++|+++|+.++++.+.+..+++|.+|.+.|+++.+.|+.+|.+|++|+++||++|+++++|+||+||||||+++
T Consensus 216 ~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~i 295 (934)
T KOG2347|consen 216 DSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNI 295 (934)
T ss_pred hHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCChH
Q 002913 331 RGSISKGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDPV 410 (866)
Q Consensus 331 ~~~Ik~gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~lI~lLleL~~~~dPi 410 (866)
+++|++|+|+.+|++|+|||+++.+++|++|+++++|||..|+.||..|+++|.+++.+.++++++|++|.+|++++||+
T Consensus 296 er~i~kGeYd~vvndYekAKsl~~~t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~ 375 (934)
T KOG2347|consen 296 ERSIKKGEYDTVVNDYEKAKSLFGKTEVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPV 375 (934)
T ss_pred hhHhhcCCceeeccchhhHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhccCcccccccccCCCCCCCCCCCCCChhhH
Q 002913 411 WHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEV 490 (866)
Q Consensus 411 w~fL~sq~~~I~~~le~~~~e~~~k~e~l~~rl~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev 490 (866)
|.||..|++||...++.|...|+++++.++ + ++ +|.+.+.++...+.-+..++.+.-+. ....+..+.
T Consensus 376 wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~--~-----~~-~~~q~s~~g~~~S~t~s~~~~~~~q~----~~~~~~~~k 443 (934)
T KOG2347|consen 376 WQCIGVQNKRILGLLESCWDDHVARLEGLR--L-----SD-KWTQPSQNGVHLSDTASSMENSQNQV----INEWKIREK 443 (934)
T ss_pred hhhccccchHHHhhhhhcchhHHHHhhccc--c-----cc-cccchhhcccccCchHHHHhhhhhhh----ccchhhhhh
Confidence 999999999999999999999999999986 1 22 55554544432221112222221110 112223334
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhHhhcc-eeccccCCCcccccCccCcchhhh--cccCcccccchHHHHHHHHHH
Q 002913 491 DAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAKSSQVSSESNLNASGNKAEEK--VGEGKYSIHSLDEVAGMIRNT 567 (866)
Q Consensus 491 ~~l~~~fv~~L~~~ll~~lp~FWkl~qs~~~G-~~~k~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~~~~k~Mi~~i 567 (866)
...++.||++||+++++++|+|||+|++||+| .|....+.+ .+..+|.+.. +....+..|++..+..|.+-+
T Consensus 444 ~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq~~-----~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t 518 (934)
T KOG2347|consen 444 TPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQVQ-----DSDINKMEQNNEVREKREVFHSLVELALMDRFT 518 (934)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccccC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44578999999999999999999999999999 444444343 1344444444 444556666677776776666
Q ss_pred HHHHHHHHHhhccCcccchhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002913 568 ISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGIS 647 (866)
Q Consensus 568 i~~y~~~v~~afl~l~~~~~~~~~L~~~l~~i~~~~~~L~~l~~~P~~al~~L~~L~~~~~~~~v~~l~~~~~~~ae~i~ 647 (866)
++.|.-....-|.+.+...+..+||+++++++|.+|++|++++.+|+++++.|++|+.+ .|++|+|.+|++++|+|+
T Consensus 519 ~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~---~rl~~~~~~~~~~~e~is 595 (934)
T KOG2347|consen 519 LSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITE---ARLQCLSSWMRASTERIS 595 (934)
T ss_pred hhhhcccccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 66666666655544444334559999999999999999999988999999999999999 999999999999999999
Q ss_pred ---cCCCcccccccccCCCCCccccchHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 002913 648 ---KDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDF 724 (866)
Q Consensus 648 ---~~EdW~~~~~~~r~~~~~~iT~LP~~Fe~~v~~~~~~l~~~l~~~~~E~~~~e~~~~~~~~~q~~v~~~f~~~l~~F 724 (866)
+.|+|++++++||+ .|+|+||+.||.+|+++|++++.++.+.++|+. +|+ ++++++.|+..+++..++|
T Consensus 596 ~l~~re~W~~~s~~~rn---~s~t~LP~~fEt~ivssl~q~~~~~l~~~gEa~----~f~-~~~~~~~i~el~I~~~~~f 667 (934)
T KOG2347|consen 596 TLAKRETWIPDSILERN---RSITYLPLAFETVIVSSLEQVNSVLLSFEGEAA----LFE-QPDMQAEIEELSISVRLAF 667 (934)
T ss_pred HHHhhhccccchhhhcc---cchhhhhHHHHHHHhhhHHhhhhHHhhcccccc----ccC-chHHHHHHHHHHHHHHHHH
Confidence 69999999999999 569999999999999999999999889899998 888 5999999999999999999
Q ss_pred HHHHHHHhhhhhhccccccccc-----ccCCCCCCCCCCccCCCCCCCCCCCcEEeeeeechhhHHhhhhHHHHHHHHhc
Q 002913 725 AGHLEHIASELAQNKSNKESQH-----LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDI 799 (866)
Q Consensus 725 ~~~Le~la~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~RLLivLSN~~y~~~~~~p~l~~~f~~~ 799 (866)
+-|+++||.+..+-+ .+.++. .|++++...++.+....++.+++||+||||||||++||+...+|+|++.|++-
T Consensus 668 l~c~e~L~~h~~~~~-~~~~q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~ 746 (934)
T KOG2347|consen 668 LNCFEDLAIHLEQIG-ADLSQLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYT 746 (934)
T ss_pred HHHHHHhhhcccccC-CchhhcccccccccccccccchhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 999999999644332 222221 13344444445555556688999999999999999999999999999999999
Q ss_pred ccccchhhhcccccc------hhhhhheeeeeeeecCCccCcccccccCc--ceeEEEecCCC
Q 002913 800 WLQSRYFLNFCSSSL------ICWKYLYCIRVCTVHGSCGSQCFGHIHPK--YHLVYWTYGRP 854 (866)
Q Consensus 800 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 854 (866)
|-.++.-++..+-++ +-=+|+. -|+----|-+-|+ .|-.-|.|--|
T Consensus 747 ~~~~~k~iE~is~s~s~l~s~l~e~Yi~---------~k~~~i~~alEp~~~~~~~~W~~~~~ 800 (934)
T KOG2347|consen 747 WLLSRKNIEDISMSLSGLGSKLFENYIE---------DKADPIRGALEPYLLDGGIQWGMAPP 800 (934)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHH---------HhhhhhhhcccchhhccccccccCCC
Confidence 999999999887222 2233432 2444445667776 45555655444
No 2
>PF15469 Sec5: Exocyst complex component Sec5
Probab=100.00 E-value=2.9e-39 Score=326.67 Aligned_cols=179 Identities=42% Similarity=0.720 Sum_probs=171.2
Q ss_pred hHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCC-CCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHH
Q 002913 239 TQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEED-PEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGML 317 (866)
Q Consensus 239 se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~-~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L 317 (866)
+++||+||++||++||+||+|||+||.+|+.++.. .++.++..|.+.|.++.+.++.+|.||++++++++++++++++|
T Consensus 1 s~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 1 SEDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999986543 33467999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccCc--chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 002913 318 QRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPS--HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLEN 395 (866)
Q Consensus 318 ~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~~--~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~ 395 (866)
+|++|||+||++|++||++|+|+.||++|.||++++..+ ++++|++||.|||++|++||..||++|.+++.+.+++++
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~ 160 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLK 160 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHh
Q 002913 396 TVRLLLELEPESDPVWHYLNVQ 417 (866)
Q Consensus 396 lI~lLleL~~~~dPiw~fL~sq 417 (866)
+|++|++|++++||||.||.+|
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHHhCCCCCCHHHHHHHcC
Confidence 9999999999999999999875
No 3
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=269.84 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=202.0
Q ss_pred ccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCC
Q 002913 198 KLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS 277 (866)
Q Consensus 198 ~~disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~ 277 (866)
..|+++++|||+.||.++.+++++++|++.+..|.++|+.++++||+|||+||||||+|+|||++|+++|..|+.+|.+
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~- 103 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDG- 103 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhh-
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhh-hccCc
Q 002913 278 GTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS-IALPS 356 (866)
Q Consensus 278 ~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~-L~~~~ 356 (866)
|..+|..+++.+.++...|.++++.+.++-.+..++.+.+|+|+||.+|++|++.+.|..|++.|..|.. |-+|.
T Consensus 104 ----L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~ 179 (636)
T KOG2346|consen 104 ----LEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD 179 (636)
T ss_pred ----HHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 45677
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCC-hHHHHHHH
Q 002913 357 HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESD-PVWHYLNV 416 (866)
Q Consensus 357 ~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~lI~lLleL~~~~d-Piw~fL~s 416 (866)
+.|.|+-+...+++|+..+-++|..||.++..+.+...+++.+|+.||.+.| ..-.+|..
T Consensus 180 ~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~ 240 (636)
T KOG2346|consen 180 GRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEK 240 (636)
T ss_pred CCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999977644 44444444
No 4
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.62 E-value=1.7e-12 Score=144.04 Aligned_cols=204 Identities=17% Similarity=0.279 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhh
Q 002913 217 QNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRA 296 (866)
Q Consensus 217 ~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I 296 (866)
.+.++++|......|..++.....+++.|..+||..||.+++++..+..++...... +..|.+.+.++.+.+...
T Consensus 5 ~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~-----l~~L~~~l~~L~~~~~~f 79 (338)
T PF04124_consen 5 TSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDS-----LDSLLDSLPELDEACQRF 79 (338)
T ss_pred ccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998765432 334677777766665553
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhcc-CcchhHHHHHHHHHHHHHHHH
Q 002913 297 FEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVNILKRVLEEVEKVMQEF 375 (866)
Q Consensus 297 ~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~-~~~v~vfkkV~~EVE~ii~~~ 375 (866)
-...-...++-.....++.-..+...|++||..|..||++|.|++|++-+..+++|.. +.+++++++|+.+|+..+..+
T Consensus 80 ~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 80 SSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3333333333444556666777889999999999999999999999999999999875 567999999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHH
Q 002913 376 KAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFE 426 (866)
Q Consensus 376 k~~L~~rL~~~~~s~ee~~~lI~lLleL~~--~~dPiw~fL~sq~~~I~~~le 426 (866)
...|.++|..+ .....+.++|.+|..++. +......||.++..|+...++
T Consensus 160 l~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~ 211 (338)
T PF04124_consen 160 LSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLE 211 (338)
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHH
Confidence 99999999888 899999999999999966 333678999998888887443
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.5e-09 Score=124.56 Aligned_cols=213 Identities=16% Similarity=0.265 Sum_probs=168.7
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhH
Q 002913 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHL 282 (866)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L 282 (866)
++.| ..|+.++. ...+++|.+.-..|..++...+++++.|...||..||.+...++++|.++..++.+-.+ |
T Consensus 18 ~~~~--~~~v~~l~-~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~-----l 89 (581)
T KOG2069|consen 18 SPEM--DAYVRELT-TKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKE-----L 89 (581)
T ss_pred Cchh--HHHHHHHc-CCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH-----H
Confidence 7778 67999988 78899999999999999999999999999999999999999999999999987654322 3
Q ss_pred HhhHHHHHHHHHhhhhhHHHhHHHHHHH----HHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccC-cc
Q 002913 283 FKLMQGVSSQANRAFEPLFERQAQAEKI----RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP-SH 357 (866)
Q Consensus 283 ~~~L~~i~~~a~~I~~pLlerr~KaekL----r~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~-~~ 357 (866)
.-.+....+.+++ ..+....+... +.++........+.+||..|.+||+.|.|+++.+--+.+.+|..+ +.
T Consensus 90 ~l~~~~L~s~~~~----f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~ 165 (581)
T KOG2069|consen 90 SLQLPELTSPCKR----FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGT 165 (581)
T ss_pred HHhhHHhhhHHHH----HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc
Confidence 3333333333333 22222222222 334444444588999999999999999999999999999988653 55
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHHH
Q 002913 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEKC 428 (866)
Q Consensus 358 v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~lI~lLleL~~--~~dPiw~fL~sq~~~I~~~le~~ 428 (866)
++++++|..+|+..+..+-.+|..+|+.+ ....++.+.+.||..+.+ .......||..+..|+.+.++..
T Consensus 166 ~pvi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I 237 (581)
T KOG2069|consen 166 IPVIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDI 237 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999988 668899999999988755 22377788888888888766544
No 6
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.89 E-value=3.5e-09 Score=95.01 Aligned_cols=71 Identities=17% Similarity=0.424 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhc
Q 002913 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (866)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e 271 (866)
+++++|||+.|+....++.|+.++.+-...|.++|+..+++||.+||+||..||.|.++|..|..++..+.
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~ 71 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELR 71 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999987643
No 7
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.26 E-value=0.00015 Score=79.58 Aligned_cols=197 Identities=9% Similarity=0.166 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHhcC-C-CCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCch
Q 002913 203 SDSFNAKLFLSRVHQ-N-TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (866)
Q Consensus 203 S~~FdP~~FLs~vH~-~-tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~ 280 (866)
.++|||..|..+..+ . .+.+++.+....|+...+.-+..+-..|-.|++.|+.+-..++.+..++...-.. ..
T Consensus 10 ~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~-----~~ 84 (291)
T PF10475_consen 10 DEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVI-----CK 84 (291)
T ss_pred CCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 459999998655444 4 4788888889999999999999999999999999999999999999998864221 22
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhcc-Ccchh
Q 002913 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVN 359 (866)
Q Consensus 281 ~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~-~~~v~ 359 (866)
.+...|+.+......---.++....|-.++..++..|+..+.+.+.=..|+..+..|||..|++-+...+.+.. ..++.
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~ 164 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS 164 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch
Confidence 34555555443322223346777888889999999999999999999999999999999999999999988654 46778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCC
Q 002913 360 ILKRVLEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELE 404 (866)
Q Consensus 360 vfkkV~~EVE~ii~~~k~~L~~rL~~~--~~s~ee~~~lI~lLleL~ 404 (866)
.|+.+-..++.....+...|-..|... ..+.+.+.+++..-.-||
T Consensus 165 c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 165 CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 888887777777777777777777654 445566777776644444
No 8
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.91 E-value=0.0026 Score=72.62 Aligned_cols=162 Identities=10% Similarity=0.275 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh-------hhhHhhhhHHHHHHHHhhhhcCCCC
Q 002913 204 DSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNF-------DCFVSCKTTIDDIESKLKRIEEDPE 275 (866)
Q Consensus 204 ~~FdP~~FLs~vH~~-tS~edL~~gl~~L~reI~~~se~LK~LV~eNF-------~kFIsAKdTID~m~~e~k~~e~~~~ 275 (866)
++|||-.||+++.++ .|+.+|-.-+..|...|..+++++..+|.+-- ..+-.++.+|..+..++..+...
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~k-- 79 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSK-- 79 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHH--
Confidence 689999999999974 67889999999999999999999999998765 23445555555555555543221
Q ss_pred CCCchhHHhhHHHHHHHHHhhhhhHH------HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHh
Q 002913 276 GSGTAHLFKLMQGVSSQANRAFEPLF------ERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (866)
Q Consensus 276 ~~~t~~L~~~L~~i~~~a~~I~~pLl------err~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kA 349 (866)
+..++.+...+- +...+ +|-.++.+|+|++-|.+-=..|+..+++++|.++...+.-+
T Consensus 80 --------------A~~sE~~V~~it~dIk~LD~AKr--NLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av 143 (383)
T PF04100_consen 80 --------------AEESEQMVQEITRDIKQLDNAKR--NLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAV 143 (383)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111111111 22222 66778899999999999999999999999999999999999
Q ss_pred hhhc----cCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002913 350 KSIA----LPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (866)
Q Consensus 350 k~L~----~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL 383 (866)
+.|. .|..++-+..++..|+.+-..++.++..-+
T Consensus 144 ~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df 181 (383)
T PF04100_consen 144 KELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDF 181 (383)
T ss_pred HHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 467899999999999998888887777654
No 9
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=97.65 E-value=0.0045 Score=73.41 Aligned_cols=213 Identities=14% Similarity=0.184 Sum_probs=153.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHH
Q 002913 215 VHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQAN 294 (866)
Q Consensus 215 vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~ 294 (866)
+..+.|.+++..-...++.+|+.+.++|.++|-+-|--.|.|.|||..|.+--.. |.+.|.++...+.
T Consensus 13 LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~------------L~~~I~~t~~ncr 80 (863)
T KOG2033|consen 13 LFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADK------------LASDIANTRVNCR 80 (863)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhh
Confidence 3446689999999999999999999999999999999999999999999865432 5555555544444
Q ss_pred hhh------hhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhcc-----C------cc
Q 002913 295 RAF------EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-----P------SH 357 (866)
Q Consensus 295 ~I~------~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~-----~------~~ 357 (866)
.+. .|=+..+. -...+.-++.-+.|.|.++|..|-.|+..+.+=.|...|..++.+-. + .+
T Consensus 81 sL~a~svA~tp~raeqn--p~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~n 158 (863)
T KOG2033|consen 81 SLHANSVAKTPGRAEQN--PAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLKN 158 (863)
T ss_pred hcccccccCCcchhhcC--chhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHhh
Confidence 433 22222222 13345666778899999999999999999999999999999987532 1 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCCh---HHHHHHHhHHHHHHHHHH-------
Q 002913 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDP---VWHYLNVQNHRIRGLFEK------- 427 (866)
Q Consensus 358 v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~lI~lLleL~~~~dP---iw~fL~sq~~~I~~~le~------- 427 (866)
.|++.+=|.-++.--.++.......|.+...+..-..+++.-+.-|+ +.|| .-.||.+++.||...++.
T Consensus 159 fP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLd-esdpsqvLelFL~~Rk~~il~lLn~~p~~~~~ 237 (863)
T KOG2033|consen 159 FPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLD-ESDPSQVLELFLEKRKEHILHLLNDGPSEPRR 237 (863)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 78888888888876677777778888887666544333333322221 2344 358999999999999984
Q ss_pred HHHHHHHHHHHHHHH
Q 002913 428 CTLDHEARMETLHNE 442 (866)
Q Consensus 428 ~~~e~~~k~e~l~~r 442 (866)
.+..|-+-.+.|..-
T Consensus 238 vka~il~~v~vl~~T 252 (863)
T KOG2033|consen 238 VKATILNIVDVLKKT 252 (863)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444433
No 10
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.56 E-value=0.026 Score=67.80 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCC----CchhHHhhHHHHHHHH
Q 002913 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS----GTAHLFKLMQGVSSQA 293 (866)
Q Consensus 218 ~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~----~t~~L~~~L~~i~~~a 293 (866)
.-+.++|......|.+.|....++.+..|.+||..|+....+.+.+..+.+....+.... ....+...+..+
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a---- 81 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDA---- 81 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH----
Confidence 346789999999999999999999999999999999988888777776655432221000 000111111111
Q ss_pred HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccC------cchhHHHHHHHH
Q 002913 294 NRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP------SHVNILKRVLEE 367 (866)
Q Consensus 294 ~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~------~~v~vfkkV~~E 367 (866)
...+..-+.+++....++.+|++.+.+=++=..+...+..|+|-.|++.-.+++.++.. .+..+++-+-.+
T Consensus 82 ---~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e 158 (593)
T PF06248_consen 82 ---AEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDE 158 (593)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHH
Confidence 11133334445555556666666655555558888999999999999999999987642 235777777777
Q ss_pred HHHHHHHHHHHH---HHhhcC
Q 002913 368 VEKVMQEFKAML---YKSMED 385 (866)
Q Consensus 368 VE~ii~~~k~~L---~~rL~~ 385 (866)
....-+.+...| |+++..
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 777666666666 666643
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.31 E-value=0.0019 Score=63.16 Aligned_cols=113 Identities=17% Similarity=0.303 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCC
Q 002913 202 FSDSFNAKLFLSRVHQ-----NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEG 276 (866)
Q Consensus 202 sS~~FdP~~FLs~vH~-----~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~ 276 (866)
-+++|||..|-+.+.. +.+--++...+..|...|+..+..++.+|.+|+...++-...+..+..-+..+
T Consensus 4 l~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v------ 77 (132)
T PF10392_consen 4 LSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAV------ 77 (132)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHH------
Confidence 3899999999999887 44566788899999999999999999999999999999999999888755443
Q ss_pred CCchhHHhhHHHHHHHHHhhhhhHHHhHHHHH-------HHHHHHHHHHHHHHHhcC
Q 002913 277 SGTAHLFKLMQGVSSQANRAFEPLFERQAQAE-------KIRSVQGMLQRFRTLFNL 326 (866)
Q Consensus 277 ~~t~~L~~~L~~i~~~a~~I~~pLlerr~Kae-------kLr~vl~~L~R~kfLFeL 326 (866)
...+..+....++|...|.+-.+++. ++..+..+|++--.++.|
T Consensus 78 ------~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 78 ------RSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554 444455555555444433
No 12
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.84 E-value=0.0013 Score=64.14 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhh
Q 002913 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (866)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~ 269 (866)
.+..++|||..||.+.++-.++++|...|..+.+. +.++|-.||.+||.-||+--..+..+-..+..
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~---L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~ 73 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKE---LKNELIELINDDYADFVSLSTNLVGMDEKIEE 73 (133)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHccHHHHHHH
Confidence 35679999999999999999999999988777655 56899999999999999988877776655544
No 13
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.11 E-value=0.063 Score=53.23 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhH
Q 002913 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHL 282 (866)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L 282 (866)
.++|+|-..-..+.-++|. .+......+.+.-+..+..|+.+|.+||..|-++-.+--.|...+...... +..+
T Consensus 18 ~~~~~pv~~al~~ld~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~-----i~~l 91 (142)
T PF04048_consen 18 TDDFNPVELALSLLDDSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQER-----IREL 91 (142)
T ss_pred cCCCcHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 6899999999999877776 488888889999999999999999999999999999988888888764332 2224
Q ss_pred HhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 002913 283 FKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRG 332 (866)
Q Consensus 283 ~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~ 332 (866)
.+.|..+...=..-...|.+-..+..+.+.++.+|.....+-.+|..|..
T Consensus 92 K~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 92 KESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 55554433222222334555566666788999999999999999998864
No 14
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.18 Score=61.87 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002913 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (866)
Q Consensus 218 ~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~ 297 (866)
..+.+++...+.+|..+-+.-++.|+.||.+++.-|-.|-.+-.+|-+.+.+-.+. +-.+.++|......-+.=.
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer-----I~~vK~~L~~~k~ll~~~r 116 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER-----IHNVKNNLEACKELLNTRR 116 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCH
Confidence 44566777888888888888899999999999999999999888888777653221 2235555555443333333
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccC--cchhHHHHHHHHHH
Q 002913 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHVNILKRVLEEVE 369 (866)
Q Consensus 298 ~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~--~~v~vfkkV~~EVE 369 (866)
..|.+-..+.-+.+.|+++|.....+-.+|.++..+|.++.|-+|-..-.+|..+... ..|.++..+-.|.+
T Consensus 117 deLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele 190 (982)
T KOG3691|consen 117 DELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELE 190 (982)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHH
Confidence 4455666666677999999999999999999999999999999999999999887653 23444444444443
No 15
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=4.6 Score=49.31 Aligned_cols=171 Identities=12% Similarity=0.218 Sum_probs=120.6
Q ss_pred CCCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchh
Q 002913 203 SDSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAH 281 (866)
Q Consensus 203 S~~FdP~~FLs~vH~~-tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~ 281 (866)
.+.|+.-.|+.++.++ .|+.++-.-...+..+|+..+..+...|..+=|.=-+.++.+++.-..+..
T Consensus 16 t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~e------------ 83 (793)
T KOG2180|consen 16 TPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEE------------ 83 (793)
T ss_pred CcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH------------
Confidence 4889999999999865 577777777777888999999999999988777666665555554444432
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHH-------HHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhc-
Q 002913 282 LFKLMQGVSSQANRAFEPLFERQAQAE-------KIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA- 353 (866)
Q Consensus 282 L~~~L~~i~~~a~~I~~pLlerr~Kae-------kLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~- 353 (866)
|...|.++.+.|++--.-+.+--..+. +|-.++.+|+|..-|..==..|...+.++.|.++++.|.-.-.+.
T Consensus 84 L~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~ 163 (793)
T KOG2180|consen 84 LFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLN 163 (793)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHH
Confidence 444455444444332222222222222 566788889999988888788999999999999999998877754
Q ss_pred ---cCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002913 354 ---LPSHVNILKRVLEEVEKVMQEFKAMLYKSMED 385 (866)
Q Consensus 354 ---~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~ 385 (866)
.|..++-+...-.-|+++=..+..++.+-+.+
T Consensus 164 ~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~ 198 (793)
T KOG2180|consen 164 HFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKA 198 (793)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777666655543
No 16
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=2.2 Score=50.60 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=112.6
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCc
Q 002913 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (866)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t 279 (866)
.+.+++||.+.|++......++++|...| .-=.+.+..+|-.|+.+-|--||+--..+-.|-..+..++++-+.
T Consensus 27 eFmkedFdve~f~s~~R~~v~letLrddL---rlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~q--- 100 (705)
T KOG2307|consen 27 EFMKEDFDVERFMSLARQKVDLETLRDDL---RLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQ--- 100 (705)
T ss_pred hhccccCCHHHHHHHHhccCCHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHH---
Confidence 45689999999999999999999998764 445567788999999999999999988877777777766554221
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHHHHH----------HHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHh
Q 002913 280 AHLFKLMQGVSSQANRAFEPLFERQAQAEKI----------RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (866)
Q Consensus 280 ~~L~~~L~~i~~~a~~I~~pLlerr~KaekL----------r~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kA 349 (866)
|-+-+..+-..-..-...+-++.++...+ ..++..++|...++.=|.+=.+.+..-..|.+--+.+++
T Consensus 101 --lreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnql 178 (705)
T KOG2307|consen 101 --LREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQL 178 (705)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 22222222111111111122222222222 334444555555544444333345445567777777777
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCChhHHHHHHHHHhcCCC
Q 002913 350 KSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMED-----PHIDLTNLENTVRLLLELEP 405 (866)
Q Consensus 350 k~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~-----~~~s~ee~~~lI~lLleL~~ 405 (866)
+...... ++..+..++..|+..+..|.+.|.- .....+.+.+|.+.-.-|+.
T Consensus 179 kf~a~h~----k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld~ 235 (705)
T KOG2307|consen 179 KFHASHL----KGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLDL 235 (705)
T ss_pred HHHHHHh----hcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 7654321 2223334455555555444444321 12345667777777655544
No 17
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=93.54 E-value=27 Score=43.94 Aligned_cols=219 Identities=13% Similarity=0.208 Sum_probs=130.7
Q ss_pred CCCCCCCCHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhH----hhhhHHHHHHHHhhhhc
Q 002913 200 MYFSDSFNAKLFLSRVHQNTSS----ADLEAGALALKTDLKGRTQQRKQLVKDNFDCFV----SCKTTIDDIESKLKRIE 271 (866)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~----edL~~gl~~L~reI~~~se~LK~LV~eNF~kFI----sAKdTID~m~~e~k~~e 271 (866)
.+++++|||+.+++...+..+- ..+-..+..|...++-..+++-.=|++.-..-+ ++.--++.|..+.....
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3678999999999987754333 333334666666666666666666666665555 33334445554444332
Q ss_pred CCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhh
Q 002913 272 EDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS 351 (866)
Q Consensus 272 ~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~ 351 (866)
..|.. +.+.++.+...+......|.+-..=-.++..+...|+.-.-.-.|-+.+...++.|||..+-+.-...++
T Consensus 84 ~~~~~-----v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~ 158 (766)
T PF10191_consen 84 EQMAS-----VQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQR 158 (766)
T ss_pred HHHHH-----HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22211 2223332222222222222211111124445555666666677788888899999999998887777665
Q ss_pred -hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHH
Q 002913 352 -IALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP------HIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGL 424 (866)
Q Consensus 352 -L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~------~~s~ee~~~lI~lLleL~~~~dPiw~fL~sq~~~I~~~ 424 (866)
|..-.++|- |.|-...++.++++|-..+... ..+++.+..++.++..+|-.+...-+|-.+++..|...
T Consensus 159 sL~~l~~~pd----~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~ 234 (766)
T PF10191_consen 159 SLAVLQDVPD----YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRL 234 (766)
T ss_pred HHHHHcCCCc----hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 322123332 4556666666766665444321 34578999999999999988888888888888777766
Q ss_pred HHH
Q 002913 425 FEK 427 (866)
Q Consensus 425 le~ 427 (866)
-..
T Consensus 235 W~~ 237 (766)
T PF10191_consen 235 WQE 237 (766)
T ss_pred HHH
Confidence 543
No 18
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=5.3 Score=49.73 Aligned_cols=188 Identities=10% Similarity=0.086 Sum_probs=121.4
Q ss_pred CcccccccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhc
Q 002913 192 DNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (866)
Q Consensus 192 ~p~lr~~~disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e 271 (866)
..++|..++-.+..|++..|..-+|..-+ .|..++..+.. ++...-.+..++.-|+.++.... -.+.++..++.+.
T Consensus 76 ~G~~r~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~-~~~~~~~~~~~~~~~~t~l~~~~-~l~~~i~~~k~~~ 151 (934)
T KOG2347|consen 76 KGDIRVTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE-QQDQRKVPGRLKGVALTSLQSEP-PLGECIEPLKLKI 151 (934)
T ss_pred CCceEEeeccCccccCchhhhhhhHhhhc--cchhhhhhccc-ccccccccccccccCCcccccCC-CcccccCchhhcc
Confidence 44566677888999999999999998877 88888888877 66666677788888888887776 4444554444322
Q ss_pred C-CCCCCCchhHHhhHHHHHHHHHhhhh--hHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHH
Q 002913 272 E-DPEGSGTAHLFKLMQGVSSQANRAFE--PLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKK 348 (866)
Q Consensus 272 ~-~~~~~~t~~L~~~L~~i~~~a~~I~~--pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~k 348 (866)
. +... ..+..+.+ + ...=|. +++.+--+.-.....-..+.-+|+-|+.|+..+.++-+++++.+|+.|..
T Consensus 152 ~~d~~~---lfp~~~~D-l---~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dt 224 (934)
T KOG2347|consen 152 NEDNKT---LFPITSVD-L---RSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDT 224 (934)
T ss_pred hhhhhh---hccccccc-c---ccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHH
Confidence 1 0000 00000000 0 111122 34444333322222233445567889999999999999999999999998
Q ss_pred hhhhcc-------CcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChh
Q 002913 349 AKSIAL-------PSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLT 391 (866)
Q Consensus 349 Ak~L~~-------~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~e 391 (866)
.-.+-+ +-+-....++|.-++... .....+|+.+....-..+
T Consensus 225 l~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~-s~ad~iF~~vl~Rk~~AD 273 (934)
T KOG2347|consen 225 LDNIHQKLERGEEDPHGSGTTKLENCIKNST-SRADLIFEDVLERKDKAD 273 (934)
T ss_pred HHHHHHHHhccccCccchHHHHHHHHHHHhh-hHHHHHHHHHHhcccccc
Confidence 766432 234456667888888777 888889988876533333
No 19
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=1.5e+02 Score=37.33 Aligned_cols=121 Identities=11% Similarity=0.183 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHH
Q 002913 223 DLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFE 302 (866)
Q Consensus 223 dL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLle 302 (866)
+...-...|+..|+.++.++..|-..||.-||.+-+-+.+|.++.+.....+.+ +...++++...=-.....+..
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd-----~N~rLQ~~g~eLiv~~e~lv~ 119 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSD-----TNRRLQESGKELIVKKEDLVR 119 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHH
Confidence 344455677778888999999999999999999999999999998875544433 333343332222223344667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHH
Q 002913 303 RQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKK 348 (866)
Q Consensus 303 rr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~k 348 (866)
.+..-.++..++++++..--++++-+++++.+++|.|=.|++.-..
T Consensus 120 ~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~ 165 (800)
T KOG2176|consen 120 CRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLES 165 (800)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7777778889999999999999999999999999999766665433
No 20
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=78.31 E-value=1.1e+02 Score=36.75 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=87.7
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHH-----HHHHHHHhhhhcc--
Q 002913 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDL-----AVREYKKAKSIAL-- 354 (866)
Q Consensus 282 L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~-----aV~dY~kAk~L~~-- 354 (866)
+..-|..+..++..+...|-.|+.-.++|...+ .=.-+|..|.+.|-.|+-++ ++..+.|-.....
T Consensus 47 iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i-------~~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~ 119 (508)
T PF04129_consen 47 ISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI-------DDIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQ 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 556666777777777777666666655655544 22349999999999998776 2233333222222
Q ss_pred -CcchhHHHHHHHHHH----HHHHHHHHHHHHhh---cCCCCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHHH
Q 002913 355 -PSHVNILKRVLEEVE----KVMQEFKAMLYKSM---EDPHIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFE 426 (866)
Q Consensus 355 -~~~v~vfkkV~~EVE----~ii~~~k~~L~~rL---~~~~~s~ee~~~lI~lLleL~~~~dPiw~fL~sq~~~I~~~le 426 (866)
.....+.+.+..+.+ +.++.+|+-|..++ +.+..+..-.-+ .|++ -.+...||..++..+-..+.
T Consensus 120 ~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~---~LLk----~~~~~~FL~~~~~~~a~El~ 192 (508)
T PF04129_consen 120 SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ---VLLK----YKELFQFLKKHSPELAKELR 192 (508)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---HHHh----hHHHHHHHHHhhHHHHHHHH
Confidence 233445555555544 33333344333333 444323221111 2222 35688899888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002913 427 KCTLDHEARMETLHNELHERAMSDARW 453 (866)
Q Consensus 427 ~~~~e~~~k~e~l~~rl~~~~~s~~~~ 453 (866)
..+.+...+ ......+.|+.+..+.
T Consensus 193 ~~Yv~tM~~--~Y~~~F~~Y~~~L~kl 217 (508)
T PF04129_consen 193 QAYVETMSW--YYSSYFKRYIRSLEKL 217 (508)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 777666544 3334455666666654
No 21
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=77.33 E-value=31 Score=41.66 Aligned_cols=144 Identities=20% Similarity=0.293 Sum_probs=85.4
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccC--cc
Q 002913 280 AHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SH 357 (866)
Q Consensus 280 ~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~--~~ 357 (866)
..|-.+|..+...-...+-|.+..+- +-.+++|+--||.+ |.+-+..|.+|-.|+.. ..
T Consensus 108 ~~lf~nIssi~~fh~qfllp~l~~r~-------Iadv~qKlAPFLKm------------YseY~knydrA~~L~~~lt~r 168 (623)
T KOG4424|consen 108 TGLFGNISSIHNFHGQFLLPELEKRI-------IADVFQKLAPFLKM------------YSEYAKNYDRALKLFQTLTSR 168 (623)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhH-------HHHHHHHhhhHHHH------------HHHHHhcchhHHHHHHHHHhh
Confidence 34555565555555555666555554 55677888777754 88889999999998875 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHH-HHhcCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002913 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVR-LLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARM 436 (866)
Q Consensus 358 v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~lI~-lLleL~~~~dPiw~fL~sq~~~I~~~le~~~~e~~~k~ 436 (866)
.+.|++|..+|++.-.-=.-.|..-|..|---+.-++-++. ||+.| +++||=|.=+...-.-|...- ........++
T Consensus 169 sp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l-p~~d~D~~d~~ksLe~I~~aA-~HsNaai~k~ 246 (623)
T KOG4424|consen 169 SPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL-PPDDPDYKDLKKSLELISTAA-SHSNAAITKM 246 (623)
T ss_pred ChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 59999999999987654444555555555222333333332 23333 455666655544333333222 2333445666
Q ss_pred HHHHHHHH
Q 002913 437 ETLHNELH 444 (866)
Q Consensus 437 e~l~~rl~ 444 (866)
|.+++-+.
T Consensus 247 E~~~kLle 254 (623)
T KOG4424|consen 247 ERLQKLLE 254 (623)
T ss_pred HHHHHHHH
Confidence 77765554
No 22
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=60.45 E-value=18 Score=31.48 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhccCcccchhhhHHHHHHHHHHHHHHHHHhhccCCCh
Q 002913 568 ISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESAPP 614 (866)
Q Consensus 568 i~~y~~~v~~afl~l~~~~~~~~~L~~~l~~i~~~~~~L~~l~~~P~ 614 (866)
|..||.+||......... -..|++++|....++++.+.+-+.+|.
T Consensus 1 M~~YCeliR~~ya~IgSG--d~gYiP~Ai~calk~Ln~iAad~~Lp~ 45 (66)
T PF06786_consen 1 MQVYCELIRELYAQIGSG--DQGYIPDAIGCALKTLNDIAADEALPE 45 (66)
T ss_pred CcHHHHHHHHHHHHhcCC--ccccCcHHHHHHHHHHHHHHcccccCH
Confidence 467999999988544322 247999999999999999999999994
No 23
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=57.62 E-value=2.7e+02 Score=29.78 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhh
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKT 258 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKd 258 (866)
++..++.....+...=.+....|...|++.+.+|..-..
T Consensus 61 a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~ 99 (236)
T cd07651 61 SLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888999999999999865543
No 24
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.80 E-value=4.2e+02 Score=34.11 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=83.3
Q ss_pred hhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 002913 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (866)
Q Consensus 251 ~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L 330 (866)
+.|.-|-.+.+++..++.+.-+ -+..|.++|..+....-.-...+++-..+-.+....+..|+-...+.+--..+
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~-----~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~v 342 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMS-----EVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTV 342 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5788888888888888876321 14458888887755433323333433333333334444445555666777778
Q ss_pred HHhhhcCChHHHHHHHHHhhhhcc---CcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002913 331 RGSISKGEFDLAVREYKKAKSIAL---PSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (866)
Q Consensus 331 ~~~Ik~gdYe~aV~dY~kAk~L~~---~~~v~vfkkV~~EVE~ii~~~k~~L~~rL 383 (866)
+..++.+||..|++..+--..+.. -..+..|+..|.+.-.....+-..+-+.+
T Consensus 343 q~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF 398 (951)
T KOG2115|consen 343 QLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREF 398 (951)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999887777655 25688899998887665554444443333
No 25
>PRK04964 hypothetical protein; Provisional
Probab=54.61 E-value=26 Score=30.50 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhccCcccchhhhHHHHHHHHHHHHHHHHHhhccCCChH
Q 002913 568 ISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESAPPV 615 (866)
Q Consensus 568 i~~y~~~v~~afl~l~~~~~~~~~L~~~l~~i~~~~~~L~~l~~~P~~ 615 (866)
|..||.+||......... -..|++++|....++++.+.+-+.+|.+
T Consensus 1 m~~yCelvR~~ya~IgSG--d~gYiP~Ai~ca~k~L~~IAad~~Lp~~ 46 (66)
T PRK04964 1 MYKYCELVRKRYAEIGSG--DLGYVPDALGCVLKALNEIAADEALPES 46 (66)
T ss_pred ChHHHHHHHHHHHHhcCC--ccccCcHHHHHHHHHHHHHhccccCCHH
Confidence 357899999988554322 2579999999999999999999999943
No 26
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=53.31 E-value=3.3e+02 Score=29.61 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 002913 356 SHVNILKRVLEEVEKVMQEFKAM 378 (866)
Q Consensus 356 ~~v~vfkkV~~EVE~ii~~~k~~ 378 (866)
....-+.++..|++.++.+||..
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 44577999999999999999876
No 27
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.60 E-value=6.2e+02 Score=31.95 Aligned_cols=203 Identities=12% Similarity=0.154 Sum_probs=114.0
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHH-HHhhhhcCCCC--CCCc
Q 002913 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIE-SKLKRIEEDPE--GSGT 279 (866)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~-~e~k~~e~~~~--~~~t 279 (866)
+-.|-|..-...+...+.+.++.+.+..+.++-+..+++|-.|+.. ..+|++-. ..+..+...+- .+..
T Consensus 15 ~~~~~~e~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q--------~~~ie~~~~~~l~r~~~~L~~v~~da 86 (773)
T KOG0412|consen 15 GHGSKPEKVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQ--------QQTIEGENMSALTRSAENLLTVEGDA 86 (773)
T ss_pred ccCcccHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchhhhHHHHHHHhhhhhhhhhccH
Confidence 3344444444445555688999999999999888888888776654 33444300 12222211110 1123
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHhhhcCChHHHHHHHHHhhhhccC-
Q 002913 280 AHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLP---STIRGSISKGEFDLAVREYKKAKSIALP- 355 (866)
Q Consensus 280 ~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLP---s~L~~~Ik~gdYe~aV~dY~kAk~L~~~- 355 (866)
.+|..++.++...|+.|...+-..--.-.+ +.+.|++-+.+-+|. .-+.++|...||+.|-.--.|...+-+.
T Consensus 87 ~el~~~i~nt~~lAe~Vs~kVr~lDla~~R---v~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~ 163 (773)
T KOG0412|consen 87 KELTDAIKNTCVLAETVSGKVRALDLAQNR---VNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQAL 163 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 558888888888888866655322111122 344555555555554 4466889999999999988888776221
Q ss_pred ------cchhHHHHH---HHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCCC--CC-ChHHHHHHH
Q 002913 356 ------SHVNILKRV---LEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELEP--ES-DPVWHYLNV 416 (866)
Q Consensus 356 ------~~v~vfkkV---~~EVE~ii~~~k~~L~~rL~~~--~~s~ee~~~lI~lLleL~~--~~-dPiw~fL~s 416 (866)
.++.....| +.-..+.-+.++..+|+++... .-+..+..+++++--=+|- ++ +.-|.||-.
T Consensus 164 i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~ 238 (773)
T KOG0412|consen 164 IESRFAKQVVPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQ 238 (773)
T ss_pred HhhhhhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHH
Confidence 111111112 2223334445555666666543 2335677777777333333 32 556777654
No 28
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.44 E-value=1.2e+02 Score=34.32 Aligned_cols=89 Identities=19% Similarity=0.307 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhcc------------CcchhHHHHHHHHHH
Q 002913 302 ERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL------------PSHVNILKRVLEEVE 369 (866)
Q Consensus 302 err~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~------------~~~v~vfkkV~~EVE 369 (866)
+.+.++++|+.- =.+.++.++|..||..|.+|-.|.- +..+.-+..-|.+|+
T Consensus 76 e~~~~AE~LK~e----------------GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNE----------------GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 677777777653 2355788999999999999999752 234444556677777
Q ss_pred HHHH--HHHHHHHHhhcCCCCChhHHHHHHHH---HhcCCCC
Q 002913 370 KVMQ--EFKAMLYKSMEDPHIDLTNLENTVRL---LLELEPE 406 (866)
Q Consensus 370 ~ii~--~~k~~L~~rL~~~~~s~ee~~~lI~l---LleL~~~ 406 (866)
.-+. .--.+.|.||--.-......++.|+. =|+|+|+
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 6543 34456677775543444334443333 4566665
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.34 E-value=91 Score=39.02 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhh--hhhhHhh-hhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002913 221 SADLEAGALALKTDLKGRTQQRKQLVKDN--FDCFVSC-KTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (866)
Q Consensus 221 ~edL~~gl~~L~reI~~~se~LK~LV~eN--F~kFIsA-KdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~ 297 (866)
..||...+..|.++++.+.+.+..|..+. +-+|... ..-++.+...+..|+++ +.+|+++|..=+...-.+|
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk-----~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK-----NQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHH
Confidence 46777778888888998988888888866 4444311 11244444444444332 3558888876555566799
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhh
Q 002913 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (866)
Q Consensus 298 ~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~I 334 (866)
..|-+.|.+++-+.+. +.+|-+.|.+|-.+|.+-+
T Consensus 622 saLg~akrq~ei~~~~--~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQ--LRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665 5677788888887777654
No 30
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=46.57 E-value=4.2e+02 Score=28.78 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhh
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~ 269 (866)
|+.+++.+.+.+.++.....+.|..-|-+++..++.-+..+++-+.+.-.
T Consensus 66 sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~ 115 (237)
T cd07657 66 SWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQ 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999998876654
No 31
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.55 E-value=2e+02 Score=30.13 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHH
Q 002913 227 GALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQ 306 (866)
Q Consensus 227 gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~K 306 (866)
.+..|..+|..+.+.+|.| ++|+..|-.+++...... .+.++...-..+...+-+.+++
T Consensus 80 el~~ld~~i~~l~ek~q~l-----------~~t~s~veaEik~L~s~L----------t~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSL-----------QQTCSYVEAEIKELSSAL----------TTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766 467777777777542211 1222333333444556667777
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhh
Q 002913 307 AEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAK 350 (866)
Q Consensus 307 aekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk 350 (866)
+.+++... ..|...|-++|-+.|.++-
T Consensus 139 l~~~k~g~-----------------~~vtpedk~~v~~~y~~~~ 165 (201)
T KOG4603|consen 139 LKNIKAGT-----------------NHVTPEDKEQVYREYQKYC 165 (201)
T ss_pred HHHHHHhc-----------------ccCCHHHHHHHHHHHHHHH
Confidence 77776654 3344555666666666543
No 32
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=44.26 E-value=2.4e+02 Score=32.77 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=42.3
Q ss_pred HhhhcCChHHHHHHHHHhhhhccC------------cchhHHHHHHHHHHHHHHHHHHHH--HHhhcCCCCC---hhHHH
Q 002913 332 GSISKGEFDLAVREYKKAKSIALP------------SHVNILKRVLEEVEKVMQEFKAML--YKSMEDPHID---LTNLE 394 (866)
Q Consensus 332 ~~Ik~gdYe~aV~dY~kAk~L~~~------------~~v~vfkkV~~EVE~ii~~~k~~L--~~rL~~~~~s---~ee~~ 394 (866)
+..++|.|++|++.|.++-.+.-+ -.+..|.-.-.+|+..+.-=+.-+ |.|=.....+ ..+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456899999999999998876542 234556655666766554322211 1111111111 24444
Q ss_pred HHHHHHhcCCCC
Q 002913 395 NTVRLLLELEPE 406 (866)
Q Consensus 395 ~lI~lLleL~~~ 406 (866)
+-.+..|+|++.
T Consensus 186 kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 186 KDCETVLALEPK 197 (536)
T ss_pred HhHHHHHhhCcc
Confidence 555556777776
No 33
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=43.57 E-value=2.7e+02 Score=31.45 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=59.9
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCc
Q 002913 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (866)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t 279 (866)
.|-+..=+.+.||.++|+ ++...|..+...-+.++.+|+.|| .+|-++++++..++...++....++. -|
T Consensus 238 nIe~~~~~~~~~Ldklh~-----eit~~LEkI~SREK~lNnqL~~l~----q~fr~a~~~lse~~e~y~q~~~gv~~-rT 307 (384)
T KOG0972|consen 238 NIEQKVGNVGPYLDKLHK-----EITKALEKIASREKSLNNQLASLM----QKFRRATDTLSELREKYKQASVGVSS-RT 307 (384)
T ss_pred HHHHhhcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccHHH-HH
Confidence 344555567899999994 566678888888888888888887 47999999999998888775444432 35
Q ss_pred hhHHhhHHHHHH
Q 002913 280 AHLFKLMQGVSS 291 (866)
Q Consensus 280 ~~L~~~L~~i~~ 291 (866)
..|.+.|.++..
T Consensus 308 ~~L~eVm~e~E~ 319 (384)
T KOG0972|consen 308 ETLDEVMDEIEQ 319 (384)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 34
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.73 E-value=22 Score=34.94 Aligned_cols=73 Identities=29% Similarity=0.368 Sum_probs=41.2
Q ss_pred cccccCCCCCCCCCCCCCcc-------chhhhhhhcc-CCCCCCCCCcCC--CCcccccccCCCCCCCCHHHHHHHhcCC
Q 002913 149 TLQSFPRGMECIDPLGLGII-------DNKTLRLITD-SSGSTPKSDRDN--VDNSLREKLMYFSDSFNAKLFLSRVHQN 218 (866)
Q Consensus 149 ~~~~~p~~~~~~DPLGl~~~-------~~~~L~~i~~-~~~~~P~~~~~~--~~p~lr~~~disS~~FdP~~FLs~vH~~ 218 (866)
-+|-+|+...- ||||++.. |...+=.+.= ...|.|...+.. +|... ..+|.|++| ++||...-..
T Consensus 28 LL~pvpR~~nR-~~LGl~~~~lpf~G~DiW~~YElSwLn~~G~PqVaig~~~ip~dS--~NlIESKSF--KLYLNSfNqt 102 (137)
T COG2904 28 LLQPVPRSLNR-DPLGLTANNLPFHGADIWTLYELSWLNAKGLPQVAIGTVYIPADS--PNLIESKSF--KLYLNSFNQT 102 (137)
T ss_pred HhccCccccCc-cccccccCCCCccccchhhhhhhhhhccCCCceEEEEEEEecCCC--ccccccchh--hhhhhhcchH
Confidence 35778997654 99999765 2222111110 225667554432 23333 457899999 9999876522
Q ss_pred --CCHHHHHH
Q 002913 219 --TSSADLEA 226 (866)
Q Consensus 219 --tS~edL~~ 226 (866)
+|+++|.+
T Consensus 103 ~f~s~e~v~~ 112 (137)
T COG2904 103 KFASWEEVRQ 112 (137)
T ss_pred hhccHHHHHH
Confidence 34444443
No 35
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=41.33 E-value=2.8e+02 Score=32.09 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=38.6
Q ss_pred ccCCccCCCCCC-CCC----CCCccccccHHHHHHHHHHHhhhcCccccc---ccccccchhhccc-ccccccccCCCCC
Q 002913 88 RARGRRDDDGTW-DGD----EPNCWKRVDEAELARRVREMRETRTAPVAQ---KYEKKPSMAAGIK-GFSTLQSFPRGME 158 (866)
Q Consensus 88 ~~~~~~~~~~~~-~~~----~p~~w~~v~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~p~~~~ 158 (866)
-|+..-+|+..| ++. .|..|. ++.. ....-+-+.+.|..+ ..|.+.++-..-+ -+.+-...|..+-
T Consensus 146 ~g~~sved~~~s~~~k~lp~vp~s~~-~es~----g~S~~~~n~~s~~~~~s~~peqa~l~~s~~kydr~n~d~dp~s~s 220 (377)
T KOG1945|consen 146 DGRWSVEDVEVSVDSKSLPGVPFSWF-AESL----GGSSSRVNFTSPTEQNSPEPEQAQLIKSSSKYDRMNDDGDPPSDS 220 (377)
T ss_pred cccccccccccccccCCCCCcchhhh-hccc----ccchhccCCcccchhcCCCccceeehhhhhhhhhhhccCCCcccc
Confidence 455666778888 332 566773 1111 112223333334322 3333333222222 3344455666666
Q ss_pred CCCCCCCCccc
Q 002913 159 CIDPLGLGIID 169 (866)
Q Consensus 159 ~~DPLGl~~~~ 169 (866)
..+|||++.+-
T Consensus 221 ~e~~l~~~~E~ 231 (377)
T KOG1945|consen 221 EEPPLGPSQEP 231 (377)
T ss_pred cccCCcccccc
Confidence 77999998774
No 36
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=40.10 E-value=5.3e+02 Score=28.15 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhh
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~ 269 (866)
++.+++.+.+.+.+......++|..-|-.++.+++.=+..+++-|.++..
T Consensus 66 sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~ 115 (234)
T cd07686 66 SWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQ 115 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999988843
No 37
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=39.00 E-value=5.1e+02 Score=31.40 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCh-hHHHHHHHHHhcCCCCCChHHHHHHHh---------HHHHHHHHHHHHHHH
Q 002913 365 LEEVEKVMQEFK--AMLYKSMEDPHIDL-TNLENTVRLLLELEPESDPVWHYLNVQ---------NHRIRGLFEKCTLDH 432 (866)
Q Consensus 365 ~~EVE~ii~~~k--~~L~~rL~~~~~s~-ee~~~lI~lLleL~~~~dPiw~fL~sq---------~~~I~~~le~~~~e~ 432 (866)
++=|+-+++.|- .+||..+.....+. -+.+++...|.+|+-...--|++|.+- +.++..+|..|-..+
T Consensus 517 hHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI 596 (817)
T KOG1925|consen 517 HHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRI 596 (817)
T ss_pred HHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 344555566654 45666664432222 246677888888988888889999873 455667777666554
No 38
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=35.70 E-value=2.2e+02 Score=28.37 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=51.0
Q ss_pred CCCCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHH----H--HhhhhhhHhhhhHHHHHHHHhhhh
Q 002913 203 SDSFNAKLFLS-----RVHQNTSSADLEAGALALKTDLKGRTQQRKQL----V--KDNFDCFVSCKTTIDDIESKLKRI 270 (866)
Q Consensus 203 S~~FdP~~FLs-----~vH~~tS~edL~~gl~~L~reI~~~se~LK~L----V--~eNF~kFIsAKdTID~m~~e~k~~ 270 (866)
-+.+|+.-|+. +.|-+...+.+...-+.|...|++-+..+-.+ + ..+|.+|..+-..|+.|...+...
T Consensus 21 leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 21 LEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRC 99 (131)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777776 66777888888888899987777776665433 3 478888888888888888877653
No 39
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.35 E-value=5.2e+02 Score=28.51 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=31.1
Q ss_pred cCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002913 336 KGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSME 384 (866)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~ 384 (866)
..+|...|+.|.+.+.-+...-..+|.+...==+..|.-|+..||.--.
T Consensus 170 ~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~ 218 (269)
T cd07673 170 TESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSN 218 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999888877554333445554444445567777777765543
No 40
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.39 E-value=32 Score=26.99 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=17.8
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 002913 333 SISKGEFDLAVREYKKAKSIA 353 (866)
Q Consensus 333 ~Ik~gdYe~aV~dY~kAk~L~ 353 (866)
++..++|++|+.||.++-.+.
T Consensus 11 sle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 11 SLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 467899999999999987653
No 41
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=33.44 E-value=30 Score=41.50 Aligned_cols=65 Identities=22% Similarity=0.083 Sum_probs=32.3
Q ss_pred ccCCCCCCCCCCCcccccceeeeecccCCcccccchhh---hhhcccCCc--cCCCCCCCCC-CCCccccc
Q 002913 46 TQKGGRSQGKKYEEEEESEVEMLSISSGDEEVSRDRGL---AAKNRARGR--RDDDGTWDGD-EPNCWKRV 110 (866)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~-~p~~w~~v 110 (866)
++|=|..+-.-.++||++|-+|....+..|....++.. ...+.++.. -+||.+|+.. -|++-.+|
T Consensus 446 n~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~dDle~~~~~~~~t~~~~ 516 (518)
T KOG2568|consen 446 NQRYAFSPLSDDDEEEEEEESLDLLESLTEGAKSRADKRKSLGKADPNKALNFEDDLEEVEEEIPSTSADV 516 (518)
T ss_pred CcccccccccCCcchhhhhhhhhhcccccccCccccccccccccccccchhchhhhhhcccccCccccccC
Confidence 34555444433444455556666666655543333322 112222222 2578889544 78876554
No 42
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.74 E-value=47 Score=30.64 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 002913 204 DSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (866)
Q Consensus 204 ~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF 250 (866)
..|+-..|-.- +.+++.|...|++|++..+.+.+.|+.|+.+|=
T Consensus 21 ~e~~~~E~~~i---ns~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 21 DEFDEEEYAAI---NSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred ccccHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555554332 678999999999999999999999999999984
No 43
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.57 E-value=1.1e+03 Score=29.49 Aligned_cols=183 Identities=11% Similarity=0.140 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhh
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEP 299 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~p 299 (866)
+++.+...-..|...-.++...++.++++=...|...+.+-..++..+....... +.+ ..++..+.-
T Consensus 48 ~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~---------q~~----~~~~~~~~~ 114 (611)
T KOG2398|consen 48 SWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQD---------QSK----KKAKDTYEV 114 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------hhH----HHHHHHHHH
Confidence 3445555556666666666777777777777777777777666666654321100 000 001222222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhh--cCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHH
Q 002913 300 LFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSIS--KGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKA 377 (866)
Q Consensus 300 Llerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik--~gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~ 377 (866)
+....+.+.+........++.++-.++ ......|+ ...|...+..|.+++.-+.......-.+...=-+..+..+|.
T Consensus 115 ~~~~~~~~~~~~e~e~~~~~~k~~~~~-~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~ 193 (611)
T KOG2398|consen 115 LCAKSNYLHRCQEKESLKEKEKRKKEL-AKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKE 193 (611)
T ss_pred HHHHHHHHHHHHhhhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333322222222221111 01111122 245777777788777754433322222222223334444444
Q ss_pred HHH---HhhcCCCCChhHHHHHHHHHhcCCCCCChHHHHHHH
Q 002913 378 MLY---KSMEDPHIDLTNLENTVRLLLELEPESDPVWHYLNV 416 (866)
Q Consensus 378 ~L~---~rL~~~~~s~ee~~~lI~lLleL~~~~dPiw~fL~s 416 (866)
.|| .++.......++.++-++.=++-..-+..+-.|+..
T Consensus 194 ~l~~~~~~is~~~~~~~q~~E~~k~~le~~sv~~~i~~fv~~ 235 (611)
T KOG2398|consen 194 ELWLFANQISESCVKIDQVMEEFKLTLESCSVDEDITKFVEA 235 (611)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHhhccCCHHHHHHHHhhc
Confidence 444 333444445566666655544433334444445443
No 44
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=32.44 E-value=6.4e+02 Score=26.87 Aligned_cols=42 Identities=5% Similarity=-0.070 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHH
Q 002913 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTI 260 (866)
Q Consensus 219 tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTI 260 (866)
.++..++.....+.+.-....+.+..-|...+..|+......
T Consensus 65 ~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~ 106 (251)
T cd07653 65 KAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQE 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888888888888888999999998875443
No 45
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.08 E-value=6.9e+02 Score=27.08 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002913 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (866)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL 383 (866)
.+|..+++.|.+++.-+......+|.....-=+..+.-||..||+--
T Consensus 168 ~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~ 214 (233)
T cd07649 168 DDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYT 214 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888877655545566677666666677888888877543
No 46
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.10 E-value=7.3e+02 Score=27.07 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002913 338 EFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKS 382 (866)
Q Consensus 338 dYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~r 382 (866)
+|...+..|.+++.-+......+|.+...-=+..+.-||..||.-
T Consensus 165 ~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~ 209 (261)
T cd07674 165 SLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999988766554445666666666667788888887765
No 47
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.49 E-value=7.4e+02 Score=28.81 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCcH
Q 002913 307 AEKIRSVQGMLQRFRTLFNLPS 328 (866)
Q Consensus 307 aekLr~vl~~L~R~kfLFeLPs 328 (866)
+.-|..+.++++-|+-+=++|.
T Consensus 137 a~~L~av~~L~~~F~~yksi~~ 158 (383)
T PF04100_consen 137 ASLLQAVKELLEHFKPYKSIPQ 158 (383)
T ss_pred HHHHHHHHHHHHHHHcccCcHH
Confidence 3455677777777777777773
No 48
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=28.80 E-value=4e+02 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHH
Q 002913 313 VQGMLQRFRTLFNLPSTIRGSISKGEFDLAVRE 345 (866)
Q Consensus 313 vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~d 345 (866)
...+|..++.|..|...|....+.|++|.++..
T Consensus 4 ~~~ll~~Yq~I~~lS~~ML~aA~~g~Wd~Li~l 36 (121)
T PRK10548 4 APHLLSAWQQILTLSQSMLRLATEGQWDELIEQ 36 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 346788999999999999999999999999875
No 49
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.34 E-value=1.3e+02 Score=35.43 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhh
Q 002913 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (866)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~ 270 (866)
=+-|+|+-|.+.+..--.++.|...+..+. .+...+=++.|-..+| |++++|.+|+++
T Consensus 282 lE~F~pk~FvsrlLGmGDi~glvek~~ev~--~~d~~el~~kl~~gkF--------tlrd~y~Qfq~i 339 (483)
T KOG0780|consen 282 LEPFDPKPFVSRLLGMGDIEGLVEKVQEVG--KDDAKELVEKLKQGKF--------TLRDFYDQFQNI 339 (483)
T ss_pred cCCCChHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHHHHHhCCc--------cHHHHHHHHHHH
Confidence 468999999999999999999999998888 4444444555555554 899999999984
No 50
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.26 E-value=7.7e+02 Score=26.64 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002913 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (866)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL 383 (866)
.+|..+|..|...+.-+...-..+|.+...==+..|..||..||.--
T Consensus 164 ~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~ 210 (261)
T cd07648 164 DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYA 210 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887777655433334555555555566777777776533
No 51
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=26.98 E-value=47 Score=22.12 Aligned_cols=12 Identities=67% Similarity=0.662 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHH
Q 002913 5 SDEDELLQMALK 16 (866)
Q Consensus 5 ~~~~~~~~~~~~ 16 (866)
++||+-||+||+
T Consensus 1 ~~Ed~~L~~Al~ 12 (18)
T PF02809_consen 1 MDEDEDLQRALE 12 (18)
T ss_dssp SHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 368889999986
No 52
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=26.61 E-value=3.2e+02 Score=32.98 Aligned_cols=129 Identities=13% Similarity=0.238 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhc--
Q 002913 259 TIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISK-- 336 (866)
Q Consensus 259 TID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~-- 336 (866)
.++.+..+.+....-+ .+|...+..+.+.|..++..- .+-..-..+.-.++.+++|-..+..++..
T Consensus 84 ~lr~~~r~~~~~~~iP-----~elv~~~~~~~s~a~~~W~~A-------R~~nDf~~F~P~Le~iv~l~re~a~~~~~~~ 151 (494)
T PF02074_consen 84 NLREMRRDYERATKIP-----EELVEELARLTSEAEQAWEEA-------RENNDFSAFAPYLEKIVELQREIAEYLGYEL 151 (494)
T ss_dssp HHHHHHHHHHHHHCS------HHHHHHHHHHHHHHHHHHHHH-------HHCT-HHHHHHHHHHHHHHHHHHHHHCTSTT
T ss_pred HHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHH-------HhhCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455555554432222 236667777766666654431 11112233344445566666666666553
Q ss_pred CChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCCChhHHHHHHHHHhcC-CC
Q 002913 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKS-------MEDPHIDLTNLENTVRLLLEL-EP 405 (866)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~r-------L~~~~~s~ee~~~lI~lLleL-~~ 405 (866)
.-||..+++|..+-+. .-+..+|.++..-+-.+..++.++ ....+.+.+.|+++-+.+++. |.
T Consensus 152 ~~YDaLLd~yEpg~t~------~~ld~~F~~lk~~l~~l~~~i~~~~~~~~~~~l~~~~~~~~Q~~~~~~~~~~~G~ 222 (494)
T PF02074_consen 152 SPYDALLDDYEPGMTT------EKLDEIFAELKAFLVPLLQKILEKQKQPDDSFLHGPFPEEKQKAFSRELLEYLGF 222 (494)
T ss_dssp SHHHHHHHHHSTT--H------HHHHHHHHHHHHHHHHHHHHHHCHTCCHTGGGGGSB--HHHHHHHHHHHHHHHT-
T ss_pred CcHHHHHhhhCCCCCH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 3499999999876553 335667777766666666665543 222345567788877776554 53
No 53
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=26.33 E-value=48 Score=24.07 Aligned_cols=12 Identities=67% Similarity=0.747 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHH
Q 002913 6 DEDELLQMALKE 17 (866)
Q Consensus 6 ~~~~~~~~~~~~ 17 (866)
+|||.||+||++
T Consensus 1 ~EDe~Lq~Ai~l 12 (26)
T smart00726 1 DEDEDLQLALEL 12 (26)
T ss_pred ChHHHHHHHHHH
Confidence 578899999987
No 54
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.21 E-value=1.4e+02 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHhhhhc
Q 002913 336 KGEFDLAVREYKKAKSIA 353 (866)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~ 353 (866)
.|+|+.|++.|..|-.++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999999998754
No 55
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.41 E-value=1.2e+03 Score=27.84 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=54.1
Q ss_pred HHhhhhhhHhhhhHHHHHHHHhhhhcC---CCC-CCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 002913 246 VKDNFDCFVSCKTTIDDIESKLKRIEE---DPE-GSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFR 321 (866)
Q Consensus 246 V~eNF~kFIsAKdTID~m~~e~k~~e~---~~~-~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~k 321 (866)
+|.+|.+.| +.||..|..++..... +.. +++-.-.+..=..++..++++...+=+-.+-++.||.=. .+ |
T Consensus 170 ~~~~~~~~~--~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV--~~--R 243 (426)
T smart00806 170 THNSFFTEI--KESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV--AQ--R 243 (426)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--c
Confidence 455555544 4567777766655321 222 122222333334445556665555444444444444321 11 2
Q ss_pred HHhcCcHHHHHhhhcCChHHHHHHHHHhhhh------ccCcchhHHHHHHH-HHHHHHH
Q 002913 322 TLFNLPSTIRGSISKGEFDLAVREYKKAKSI------ALPSHVNILKRVLE-EVEKVMQ 373 (866)
Q Consensus 322 fLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L------~~~~~v~vfkkV~~-EVE~ii~ 373 (866)
.+==+|. ..+.+.++...|+.- |-....|++++||+ |.+.+.+
T Consensus 244 gVRp~~~---------qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcE 293 (426)
T smart00806 244 GVRPSKK---------QLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCE 293 (426)
T ss_pred CCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 2222222 334455555555442 22467899999996 4554443
No 56
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=5.1e+02 Score=27.41 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.3
Q ss_pred hHHHhHHHHHHHHHHHHHHH
Q 002913 299 PLFERQAQAEKIRSVQGMLQ 318 (866)
Q Consensus 299 pLlerr~KaekLr~vl~~L~ 318 (866)
|+..-..++..+|..+++|+
T Consensus 200 pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666555554
No 57
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.81 E-value=1.8e+02 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=33.6
Q ss_pred hcCChHHHHHHHHHhhhhcc-----Cc---chhHHHHHHHHHHHHHHHHHHHHHH
Q 002913 335 SKGEFDLAVREYKKAKSIAL-----PS---HVNILKRVLEEVEKVMQEFKAMLYK 381 (866)
Q Consensus 335 k~gdYe~aV~dY~kAk~L~~-----~~---~v~vfkkV~~EVE~ii~~~k~~L~~ 381 (866)
+.|+|++|+..|..|-.++. +. -...++.-..+.-..++.++..|-+
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999987553 12 2355666667777777777777644
No 58
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.73 E-value=4.8e+02 Score=25.54 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002913 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (866)
Q Consensus 218 ~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~ 297 (866)
.+.+..|..++..+.++|+++-.+--.-+-.++..-=.+.+.++.|...+...... ..+|..-+-+--..+....
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s-----~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSS-----YERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHH
Confidence 56788899999999999999988887777888888888888888888888765432 2234444433333334333
Q ss_pred hhHHHhHHHHHHHHHHHHHH
Q 002913 298 EPLFERQAQAEKIRSVQGML 317 (866)
Q Consensus 298 ~pLlerr~KaekLr~vl~~L 317 (866)
.-|-.-..-.+=||.+..++
T Consensus 107 ~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 107 SQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555444
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.68 E-value=1e+03 Score=29.04 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=44.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhc--cCcchhHHHHHHHHHHHHHH
Q 002913 296 AFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA--LPSHVNILKRVLEEVEKVMQ 373 (866)
Q Consensus 296 I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~--~~~~v~vfkkV~~EVE~ii~ 373 (866)
+...-.+.+.++.+++..+.-++|.-.--+||+.=...+. .|..+-+...+.+.-+ ++=++..+.+-+.++...+.
T Consensus 409 Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~--~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~ 486 (569)
T PRK04778 409 LRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE--MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVE 486 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 4444455566666667776666666555566653333331 2333333333333222 23345666767777777777
Q ss_pred HHHHHH
Q 002913 374 EFKAML 379 (866)
Q Consensus 374 ~~k~~L 379 (866)
.+..+.
T Consensus 487 ~L~~q~ 492 (569)
T PRK04778 487 TLEEET 492 (569)
T ss_pred HHHHHH
Confidence 776664
No 60
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=23.33 E-value=46 Score=39.91 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=45.3
Q ss_pred HHHhcccccchhhhccc--ccchhhhhheeeeeeeecCCccCc---cc------ccccCcceeEEEecCCC--Ccccccc
Q 002913 795 KYKDIWLQSRYFLNFCS--SSLICWKYLYCIRVCTVHGSCGSQ---CF------GHIHPKYHLVYWTYGRP--DLKSQIF 861 (866)
Q Consensus 795 ~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~--~~~~~~~ 861 (866)
-|+.+++-.|.++--+. .|+---+|.||-.-=-|-|.||.. |- |-++|+|||-||--+-- |-.++.+
T Consensus 50 ~~k~~~~~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~ 129 (528)
T KOG1595|consen 50 CFKWHFLNQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDEHCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCV 129 (528)
T ss_pred hhhhhhhccccccchhhhcCccccccceeecchhhccccCCCCcccchhcccccCCcceeEeccccccccCccccCCCcc
Confidence 35566666666655443 344555677777777777777753 32 66889999999976644 5556655
Q ss_pred cc
Q 002913 862 VD 863 (866)
Q Consensus 862 ~~ 863 (866)
.|
T Consensus 130 ~~ 131 (528)
T KOG1595|consen 130 KN 131 (528)
T ss_pred cC
Confidence 54
No 61
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=22.97 E-value=1.1e+03 Score=29.45 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHh-hhcCChHHHHHHHHHhhhh---ccC
Q 002913 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPS--TIRGS-ISKGEFDLAVREYKKAKSI---ALP 355 (866)
Q Consensus 282 L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs--~L~~~-Ik~gdYe~aV~dY~kAk~L---~~~ 355 (866)
|...++.+...+-.+=..|-....+-.+-..+..+++-+..++.-+. .+... -.-++.+.-.+...-.++| ...
T Consensus 11 Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~ls~~ 90 (710)
T PF07393_consen 11 LDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRLSKE 90 (710)
T ss_pred HHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHHHHh
Confidence 44444444444433333333222222333445566777776666543 33333 1233333333333344443 333
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCCCCCChHHHHHHH
Q 002913 356 S-HVNILKRVLEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELEPESDPVWHYLNV 416 (866)
Q Consensus 356 ~-~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~--~~s~ee~~~lI~lLleL~~~~dPiw~fL~s 416 (866)
- ..+.+..+..-++...+.|.+.|.+++... .-+.+...++...|..++-..+-+-.|+..
T Consensus 91 ~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k 154 (710)
T PF07393_consen 91 LSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINK 154 (710)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Confidence 3 678889999999999999999999988654 223567889999999998777777777764
No 62
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.42 E-value=75 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.7
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 002913 333 SISKGEFDLAVREYKKAKSIA 353 (866)
Q Consensus 333 ~Ik~gdYe~aV~dY~kAk~L~ 353 (866)
....|+|+.|+..|.+|-.+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCchHHHHHHHHHHHHC
Confidence 456899999999999997763
No 63
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.42 E-value=66 Score=40.30 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q 002913 209 KLFLSRVHQNTSSADLEAGALA 230 (866)
Q Consensus 209 ~~FLs~vH~~tS~edL~~gl~~ 230 (866)
..||.... -++++++..+-.
T Consensus 705 sIflgS~r--mpyeeik~~ILe 724 (1102)
T KOG1924|consen 705 SIFLGSFR--MPYEEIKNVILE 724 (1102)
T ss_pred HHHHhhcc--CCHHHHHHHHhh
Confidence 45555332 677777665533
No 64
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=21.87 E-value=1.2e+03 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHhhhcCChHHHHHHHHHh
Q 002913 312 SVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (866)
Q Consensus 312 ~vl~~L~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kA 349 (866)
.+..+++..--.+..|-.+..||+-.-|=..+..|.-.
T Consensus 155 ~~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~ 192 (338)
T PF04124_consen 155 ALQQMLSQLINQLRTPLKLPACIKTVGYLRRLPVLTES 192 (338)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhccccch
Confidence 33445555666788898899999887777777666544
No 65
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=1.1e+02 Score=32.72 Aligned_cols=18 Identities=50% Similarity=0.626 Sum_probs=10.6
Q ss_pred CCccHHHHHHHHHHHHHhh
Q 002913 3 SDSDEDELLQMALKEQAQR 21 (866)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (866)
.|-|||||.+- |.|-.|-
T Consensus 155 a~~DEDEL~~E-LdeLeqe 172 (221)
T KOG1656|consen 155 ADFDEDELMAE-LDELEQE 172 (221)
T ss_pred cccCHHHHHHH-HHHHHHH
Confidence 45788888653 4443333
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.39 E-value=1.5e+03 Score=27.54 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=48.8
Q ss_pred hhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHH---Hhc
Q 002913 249 NFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRT---LFN 325 (866)
Q Consensus 249 NF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kf---LFe 325 (866)
+--+|+.|+..|+.+...+...+..... +...|+.+...-..-...+...+.+-..+|..+ +=++|.| +-.
T Consensus 96 ~~~~f~~a~~~~~~~~~~l~~~e~~~~~-----i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l-l~~~~~~G~a~~~ 169 (569)
T PRK04778 96 DKFRFRKAKHEINEIESLLDLIEEDIEQ-----ILEELQELLESEEKNREEVEQLKDLYRELRKSL-LANRFSFGPALDE 169 (569)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccchHHH
Confidence 3467999999999988888876554322 444444432222221112222222222222221 1111111 111
Q ss_pred Cc----------HHHHHhhhcCChHHHHHHHHHhhhh
Q 002913 326 LP----------STIRGSISKGEFDLAVREYKKAKSI 352 (866)
Q Consensus 326 LP----------s~L~~~Ik~gdYe~aV~dY~kAk~L 352 (866)
|. ......-..|||..|-+.+.+.+.-
T Consensus 170 le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~ 206 (569)
T PRK04778 170 LEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEE 206 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11 2233445669999998888887763
No 67
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.23 E-value=79 Score=39.69 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=7.5
Q ss_pred ccccccHHHHH
Q 002913 106 CWKRVDEAELA 116 (866)
Q Consensus 106 ~w~~v~~~~l~ 116 (866)
-|-+|+++-|+
T Consensus 644 FWvkv~Edk~e 654 (1102)
T KOG1924|consen 644 FWVKVNEDKLE 654 (1102)
T ss_pred eeeecchhhcc
Confidence 57777777654
No 68
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.22 E-value=8.8e+02 Score=24.68 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002913 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (866)
Q Consensus 218 ~tS~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~ 297 (866)
--.|++|...-..|...|+.++.+|..|= ..+.+-|-+. -.++.++...... ...+...|......-..+-
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk-~~~~~~v~~L---~h~keKl~~~~~~-----~~~l~~~l~~~~~~~~~~r 111 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLK-KKIGKTVQIL---THVKEKLHFLSEE-----LERLKQELKDREEELAKLR 111 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34588898899999999999999988774 3333333332 2222222221111 0113333333333334444
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhh
Q 002913 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (866)
Q Consensus 298 ~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~I 334 (866)
..+...+..-++++..+.-|+..-.++.-|..|..++
T Consensus 112 ~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~ 148 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 4555555566667776666776777777787776544
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=21.03 E-value=83 Score=23.54 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=15.5
Q ss_pred hhhcCChHHHHHHHHHhhhh
Q 002913 333 SISKGEFDLAVREYKKAKSI 352 (866)
Q Consensus 333 ~Ik~gdYe~aV~dY~kAk~L 352 (866)
+.+.|+|+.|+..|.++-.+
T Consensus 9 ~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHCT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 45689999999999996654
No 70
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.42 E-value=2.2e+02 Score=30.94 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 002913 232 KTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIR 311 (866)
Q Consensus 232 ~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr 311 (866)
.+-.+....+|-.|+.+|... .+-||.|+.++..|+..-.. ..+..+.+.+.+..+...-++.+..++.+|
T Consensus 49 e~~leey~~em~~lL~ekm~H----veelr~iHadiN~men~ikq-----~k~~~~~~~~~~~r~~eey~~lk~h~d~lR 119 (286)
T KOG4451|consen 49 EENLEEYELEMGVLLLEKMGH----VEELREIHADINEMENDIKQ-----VKALEQHITSCNGRKGEEYMELKSHADELR 119 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 345566777888999999988 56788888777766542211 223334445556677888889999999998
Q ss_pred HHHHHHHHHHHH
Q 002913 312 SVQGMLQRFRTL 323 (866)
Q Consensus 312 ~vl~~L~R~kfL 323 (866)
...-=|++++.|
T Consensus 120 ~~~lgl~~L~Dl 131 (286)
T KOG4451|consen 120 QINLGLNTLEDL 131 (286)
T ss_pred HHhcCccchhhH
Confidence 765445544444
No 71
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.24 E-value=5.7e+02 Score=27.24 Aligned_cols=40 Identities=10% Similarity=0.000 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhHHH
Q 002913 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQR 242 (866)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~edL~~gl~~L~reI~~~se~L 242 (866)
....=+|...+..+. +.-.+.....+..+.++++.....+
T Consensus 102 ~~~~~~~~~ll~~il-~~~~~~~~~~l~~l~~~l~~le~~~ 141 (292)
T PF01544_consen 102 NERPSSPEDLLYAIL-DEIVDDYFEVLEELEDELDELEDEL 141 (292)
T ss_dssp TCSCSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556777776665 4456666666666666666665555
No 72
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.22 E-value=2.1e+02 Score=24.89 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=27.6
Q ss_pred cCChHHHHHHHHHhhhhcc-----Ccch---hHHHHHHHHHHHHHHHHHHHHHHh
Q 002913 336 KGEFDLAVREYKKAKSIAL-----PSHV---NILKRVLEEVEKVMQEFKAMLYKS 382 (866)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~~-----~~~v---~vfkkV~~EVE~ii~~~k~~L~~r 382 (866)
.|+|++|+..|..|-..+. ..+. ..+..-..+.-..++.++..+..+
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~r 75 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLER 75 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999987542 2222 223333334444555555555443
No 73
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.10 E-value=8.2e+02 Score=23.87 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHH
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIES 265 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~ 265 (866)
.+++|...+..|..+++.+..++..| ..=...|-.+++||+.+..
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l-~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEEL-QASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Confidence 46777777888888888777777664 5556778888889888764
No 74
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=20.06 E-value=1.1e+03 Score=25.52 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=43.9
Q ss_pred cCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCChhHHHHHHHH
Q 002913 336 KGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP---HIDLTNLENTVRL 399 (866)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~---~~s~ee~~~lI~l 399 (866)
+.+|..+|+.|.+.+.-+......+|.....-=++.|.-||..||.--... =++.++..+=||.
T Consensus 173 ~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~Cv~dD~~~e~~r~ 239 (242)
T cd07671 173 ERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQCVKDDELYEEVRT 239 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHcCcHHHHHHHHH
Confidence 578899999888887766655567777777777788999999998654322 2233454454544
No 75
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.04 E-value=2.2e+02 Score=25.72 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=27.9
Q ss_pred hcCChHHHHHHHHHhhhhccC---------cchhHHHHHHHHHHHHHHHHHHHH
Q 002913 335 SKGEFDLAVREYKKAKSIALP---------SHVNILKRVLEEVEKVMQEFKAML 379 (866)
Q Consensus 335 k~gdYe~aV~dY~kAk~L~~~---------~~v~vfkkV~~EVE~ii~~~k~~L 379 (866)
+.|+|++|+..|..|-.++.. +....+..-..|.-..++.+|..|
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999875421 222333444455555555555543
Done!