Query 002913
Match_columns 866
No_of_seqs 213 out of 333
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 94.6 0.11 3.6E-06 54.4 9.5 197 318-610 13-216 (235)
2 1q0v_A Hydrophilic protein; ha 51.7 15 0.00053 32.3 4.4 15 3-17 7-21 (81)
3 3dwc_A TCMCP-1, metallocarboxy 51.1 2.9E+02 0.01 31.8 16.1 131 257-405 81-225 (505)
4 1deq_A Fibrinogen (alpha chain 45.0 1.2E+02 0.004 33.8 10.9 43 229-271 63-105 (390)
5 3haj_A Human pacsin2 F-BAR; pa 39.4 3.6E+02 0.012 30.3 14.6 46 336-381 205-250 (486)
6 3hq2_A Bacillus subtilis M32 c 37.3 5.1E+02 0.017 29.8 15.2 167 219-405 38-222 (501)
7 3ghg_A Fibrinogen alpha chain; 28.5 6E+02 0.02 29.5 13.5 17 232-248 59-75 (562)
8 2efk_A CDC42-interacting prote 26.0 5.4E+02 0.018 26.2 13.3 40 220-259 70-109 (301)
9 2rpa_A Katanin P60 ATPase-cont 24.0 91 0.0031 27.1 4.7 23 331-353 20-42 (78)
10 3iee_A Putative exported prote 23.8 6.7E+02 0.023 26.5 15.1 102 290-395 141-260 (270)
11 1ik9_A DNA repair protein XRCC 22.6 4.8E+02 0.016 26.5 10.6 48 221-269 134-182 (213)
12 3aco_A Pacsin2, protein kinase 20.8 7.6E+02 0.026 26.1 13.3 35 221-255 90-124 (350)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=94.62 E-value=0.11 Score=54.36 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=134.0
Q ss_pred HHHHHHhcCcHHHHHhhhcCChHHHHHHHHHhhhhccC-------cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh
Q 002913 318 QRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP-------SHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDL 390 (866)
Q Consensus 318 ~R~kfLFeLPs~L~~~Ik~gdYe~aV~dY~kAk~L~~~-------~~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ 390 (866)
+..+.+-++|..|.-+|...+|++||.--.+++.++.. .+.....-+-.-|++....+...|-+.|.. +...
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~ 91 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEI 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCH
Confidence 44677888899999999999999999999999987642 223445556667778888888888888855 6678
Q ss_pred hHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhccCccccccc
Q 002913 391 TNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADYSV 470 (866)
Q Consensus 391 ee~~~lI~lLleL~~~~dPiw~fL~sq~~~I~~~le~~~~e~~~k~e~l~~rl~~~~~s~~~~~~l~~~~~~~~~~~~~~ 470 (866)
.+..+.|.+|.+||-.+.-.-.||.++..+|+..+..+ .. .
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l--~~--------------------------------~----- 132 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI--GS--------------------------------V----- 132 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC------------------------------------C-----
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh--cc--------------------------------c-----
Confidence 89999999999999888888889988887777666322 00 0
Q ss_pred ccCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhHhhcceeccccCCCcccccCccCcchhhhcccC
Q 002913 471 TCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKVALSVFSGKFAKSSQVSSESNLNASGNKAEEKVGEG 550 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~ev~~l~~~fv~~L~~~ll~~lp~FWkl~qs~~~G~~~k~~~~~~~~~~~~~~~k~~~~~~~~ 550 (866)
+ + ...|+..|+.+.-+.|-+ +++-|.. -| +.. + +.
T Consensus 133 g-------d--------------~~~Yi~~Ls~i~Fs~I~~---t~~~f~~-~F-~~~--~------~~----------- 167 (235)
T 2d2s_A 133 D-------N--------------PTNYLTQLAVIRFQTIKK---TVEDFQD-IF-KEL--G------AK----------- 167 (235)
T ss_dssp C-------S--------------HHHHHHHHHHHHHHHHHH---HHHHHHH-HS-TTC--C------HH-----------
T ss_pred C-------C--------------HHHHHHHHHHHHHHHHHH---HHHHHHH-Hh-CCC--C------cc-----------
Confidence 0 0 346788888773333321 2222221 11 100 0 00
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhccCcccchhhhHHHHHHHHHHHHHHHHHhhcc
Q 002913 551 KYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKE 610 (866)
Q Consensus 551 ~~~~~~~~~~k~Mi~~ii~~y~~~v~~afl~l~~~~~~~~~L~~~l~~i~~~~~~L~~l~ 610 (866)
-...+..++.+-+..|.++++-=+.. +. .... +|+..++.-|..|...+
T Consensus 168 -----~~S~lV~Wa~~eve~f~~l~~rqv~~--~~-~l~~---ecv~i~~~~~~~L~~vG 216 (235)
T 2d2s_A 168 -----ISSILVDWCSDEVDNHFKLIDKQLLN--DE-MLSP---GSIKSSRKQIDGLKAVG 216 (235)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHTTC------CCH---HHHHHHHHHHHGGGGGT
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHccC--Cc-cHHH---HHHHHHHHHHHHHHHcC
Confidence 12267789999999999888665533 22 2333 99999999999988773
No 2
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=51.70 E-value=15 Score=32.29 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=11.1
Q ss_pred CCccHHHHHHHHHHH
Q 002913 3 SDSDEDELLQMALKE 17 (866)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (866)
-++||||=|.+||+=
T Consensus 7 ~~~~eDeDLkrAieL 21 (81)
T 1q0v_A 7 TPEDEEELIRKAIEL 21 (81)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHH
Confidence 467788888888753
No 3
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=51.11 E-value=2.9e+02 Score=31.79 Aligned_cols=131 Identities=10% Similarity=0.203 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhc
Q 002913 257 KTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISK 336 (866)
Q Consensus 257 KdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~ 336 (866)
+..|+.|+.+.+....-+ .+|...+..+.+.|..++.. +.+-..-..+.-.++.+++|-..+...+..
T Consensus 81 ~a~lr~~~r~~~~~~~iP-----~elv~~~~~~~s~~~~~W~~-------Ar~~nDf~~F~P~L~~vv~l~re~A~~~~~ 148 (505)
T 3dwc_A 81 RANLREMRRAWELENLLP-----EEFVERKTVLTTKAHQVWKT-------CREKNDFAGFLPTLKELIALFREEGKLRAG 148 (505)
T ss_dssp HHHHHHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHHHH-------HHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 345666666666543322 23777777777777664433 112222233444455667776667766654
Q ss_pred ----CChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCCCChhHHHHHHHHHhcC
Q 002913 337 ----GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM---------EDPHIDLTNLENTVRLLLEL 403 (866)
Q Consensus 337 ----gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~rL---------~~~~~s~ee~~~lI~lLleL 403 (866)
.-||..+++|..+-+. .-+..||.++..-+-.+.+++.++= ...+.+.+.|+++.+.+++.
T Consensus 149 ~~~~~pYDaLLd~yEpg~t~------~~ld~iF~~lk~~L~~Ll~~i~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~l~~ 222 (505)
T 3dwc_A 149 NSGKHPYEALVDIYEPGMTL------QRLDEIFGNVRSWLPELLKEVQEKQKALGETVLEPKGPFPVSKQEALCRFFMDV 222 (505)
T ss_dssp TSCCCHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHhhCCCCCH------HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCCCCCHHHHHHHHHHHHHH
Confidence 3399999999875543 3356666666665555555554321 12345678888887766554
Q ss_pred -CC
Q 002913 404 -EP 405 (866)
Q Consensus 404 -~~ 405 (866)
|.
T Consensus 223 lGf 225 (505)
T 3dwc_A 223 WKF 225 (505)
T ss_dssp TTC
T ss_pred cCC
Confidence 64
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.02 E-value=1.2e+02 Score=33.80 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHHHHHHHhhhhc
Q 002913 229 LALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (866)
Q Consensus 229 ~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID~m~~e~k~~e 271 (866)
..+...|+.+...|..+-..|=+.|.-.+.+.+.++..+++..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~ 105 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN 105 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 5566677777777777777777777777777777777776643
No 5
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=39.40 E-value=3.6e+02 Score=30.31 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=31.2
Q ss_pred cCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 002913 336 KGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYK 381 (866)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EVE~ii~~~k~~L~~ 381 (866)
+.+|..+|..|++.+..+......+|..+..=-++.+..+|..||.
T Consensus 205 ~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~ 250 (486)
T 3haj_A 205 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLE 250 (486)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887765544334455666666666777778777776
No 6
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0
Probab=37.29 E-value=5.1e+02 Score=29.80 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHhhh--hHHHHHHHHh------hhhhhHhhhhHHHHHHHHhhhhcCCCCCCCchhHHhhHHHHH
Q 002913 219 TSSADLEAGALALKTDLKGR--TQQRKQLVKD------NFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVS 290 (866)
Q Consensus 219 tS~edL~~gl~~L~reI~~~--se~LK~LV~e------NF~kFIsAKdTID~m~~e~k~~e~~~~~~~t~~L~~~L~~i~ 290 (866)
...+.=...+..|...+.++ +..+..|+.+ +.+-. .+..|+.|+.+.+....-+ .+|...+..+.
T Consensus 38 ~g~~~R~e~~a~Ls~~~h~~~t~~~~~~~l~~~~~~~~~l~~~--~~a~lr~~~r~~~~~~~iP-----~~lv~~~~~~~ 110 (501)
T 3hq2_A 38 NGSEDRAESIGQLSTDIFNIQTSDRMKELIDVLYERFDDLSED--TKKAVELAKKEYEENKKIP-----EAEYKEYVILC 110 (501)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTGGGSCHH--HHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcccCCCHH--HHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHH
Confidence 33444444445555555444 3355555532 22221 2355666766666543322 23777777777
Q ss_pred HHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhhhc--CChHHHHHHHHHhhhhccCcchhHHHHHHHHH
Q 002913 291 SQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISK--GEFDLAVREYKKAKSIALPSHVNILKRVLEEV 368 (866)
Q Consensus 291 ~~a~~I~~pLlerr~KaekLr~vl~~L~R~kfLFeLPs~L~~~Ik~--gdYe~aV~dY~kAk~L~~~~~v~vfkkV~~EV 368 (866)
+.|..++..- .+-..-..+.-.++.+++|-......+.. .-||..+++|..+-+ ..-+..||.++
T Consensus 111 s~~~~~W~~A-------r~~nDf~~F~P~L~~vv~l~re~A~~~~~~~~pYDaLLd~yEpg~t------~~~ld~iF~~L 177 (501)
T 3hq2_A 111 SKAETAWEEA-------KGKSDFSLFSPYLEQLIEFNKRFITYWGYQEHPYDALLDLFEPGVT------VKVLDQLFAEL 177 (501)
T ss_dssp HHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHHHHHHHHHCCSSCTTHHHHHHHSTTCC------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCCC------HHHHHHHHHHH
Confidence 7776644331 11111222333334455555555555443 459999999987554 34467777777
Q ss_pred HHHHHHHHHHHHHhh-------cCCCCChhHHHHHHHHHhcC-CC
Q 002913 369 EKVMQEFKAMLYKSM-------EDPHIDLTNLENTVRLLLEL-EP 405 (866)
Q Consensus 369 E~ii~~~k~~L~~rL-------~~~~~s~ee~~~lI~lLleL-~~ 405 (866)
..-+-.+.+++.++= ...+.+.+.|+++.+.+++. |.
T Consensus 178 k~~l~~Li~~i~~~~~~~~~~~l~~~~~~~~Q~~l~~~~l~~lGf 222 (501)
T 3hq2_A 178 KEAIIPLVKQVTASGNKPDTSFITKAFPKEKQKELSLYFLQELGY 222 (501)
T ss_dssp HHHHHHHHHHHHSSTTCCCCTTTSSCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCCHHHHHHHHHHHHHHcCC
Confidence 777777766665431 12245568888888776554 54
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.49 E-value=6e+02 Score=29.46 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=6.5
Q ss_pred HHHHhhhhHHHHHHHHh
Q 002913 232 KTDLKGRTQQRKQLVKD 248 (866)
Q Consensus 232 ~reI~~~se~LK~LV~e 248 (866)
.+.+...=++|+..|++
T Consensus 59 ErDltkrINELKnqLEd 75 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFE 75 (562)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 33333333344433333
No 8
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=25.99 E-value=5.4e+02 Score=26.23 Aligned_cols=40 Identities=5% Similarity=-0.129 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhH
Q 002913 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTT 259 (866)
Q Consensus 220 S~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdT 259 (866)
++..++.....+.+.-.+..+.|..-|.+.+..|+.-...
T Consensus 70 ~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~ 109 (301)
T 2efk_A 70 SFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQ 109 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544443
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.01 E-value=91 Score=27.11 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHhhhcCChHHHHHHHHHhhhhc
Q 002913 331 RGSISKGEFDLAVREYKKAKSIA 353 (866)
Q Consensus 331 ~~~Ik~gdYe~aV~dY~kAk~L~ 353 (866)
+++.-.|+||.++-.|..|....
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHH
Confidence 45566799999999999987743
No 10
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.79 E-value=6.7e+02 Score=26.54 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=54.1
Q ss_pred HHHHHhhhhhHHHhHHHHH-----------HHHHHHHHHHHHHHHhcCcHH---HHHhhhcCChHHHHHHHHHhhhhccC
Q 002913 290 SSQANRAFEPLFERQAQAE-----------KIRSVQGMLQRFRTLFNLPST---IRGSISKGEFDLAVREYKKAKSIALP 355 (866)
Q Consensus 290 ~~~a~~I~~pLlerr~Kae-----------kLr~vl~~L~R~kfLFeLPs~---L~~~Ik~gdYe~aV~dY~kAk~L~~~ 355 (866)
....++||.-|-...++|+ ++-.+..++..-+-+|+|=.+ +...--...|.+....|..|++|--.
T Consensus 141 ~e~k~~ifd~Lsp~aeqAE~~lL~DhPLKeqIla~kkm~~~~q~ii~l~~rk~~~D~~~l~~~~~eLek~l~~a~Klp~~ 220 (270)
T 3iee_A 141 SEYKQNIFDILSPFTEQAELVLLVDNPLKAQIMSVRKMSSTMQSILNLYARKHRMDGPRIDLKVAELTKQLDAAKKLPVV 220 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCTTSCCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4456678877777777776 333444444444444443211 11111223466667778888887543
Q ss_pred c----chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 002913 356 S----HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLEN 395 (866)
Q Consensus 356 ~----~v~vfkkV~~EVE~ii~~~k~~L~~rL~~~~~s~ee~~~ 395 (866)
. ....|+.....|+.-+..+++ .......+.++...
T Consensus 221 ~~~~~~~~~Y~~Flk~ve~Fl~~lrk----~r~~g~yse~d~~~ 260 (270)
T 3iee_A 221 NGHEGEMKSYQAFLSQVETFIKQVKK----VREKGEYSDADYDM 260 (270)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH----HTTSSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcHHHHHH
Confidence 3 345555555555555555555 45555555444333
No 11
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.63 E-value=4.8e+02 Score=26.54 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHhhhhHHH-HHHHHhhh
Q 002913 221 SADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTID-DIESKLKR 269 (866)
Q Consensus 221 ~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIsAKdTID-~m~~e~k~ 269 (866)
..+|.+....|..+.+.+..+...|. +.+++||++|+..+ .||.+|..
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~-~qlE~~v~~K~~~E~~L~~KF~~ 182 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQ-GRFEKAVSAKEALETDLYKRFIL 182 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888888775 88999999999876 56777764
No 12
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=20.79 E-value=7.6e+02 Score=26.06 Aligned_cols=35 Identities=3% Similarity=-0.202 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhHh
Q 002913 221 SADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVS 255 (866)
Q Consensus 221 ~edL~~gl~~L~reI~~~se~LK~LV~eNF~kFIs 255 (866)
+..++.....+.+.-.+..+.|...|...+..|+.
T Consensus 90 w~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~ 124 (350)
T 3aco_A 90 WMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK 124 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666543
Done!