BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002914
(866 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase
Length = 534
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 771 QYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDR 830
++ + ++ + DF + WW LN KYP LSK+A +LS+P S + F +
Sbjct: 450 EFYRKEIVILSEDFKVXEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITE 509
Query: 831 YRSSLRPETVEALICAKDWFQ 851
R+ + +TV++L+ +++
Sbjct: 510 KRNRIGQQTVDSLLFLNSFYK 530
>pdb|3PPY|A Chain A, Crystal Structure Of The D1596aN1602A DOUBLE MUTANT OF AN
ENGINEERED Vwf A2 Domain (N1493c And C1670s)
Length = 196
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 663 RDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPL 719
+ C +VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++
Sbjct: 5 KRCSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY 64
Query: 720 PLTPTYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
P + +G+ ++ QGG T L+ L+D + + +Q
Sbjct: 65 PFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGAREQ 113
>pdb|3PPW|A Chain A, Crystal Structure Of The D1596a Mutant Of An Engineered
Vwf A2 Domain (N1493c And C1670s)
Length = 196
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 663 RDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPL 719
+ C +VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++
Sbjct: 5 KRCSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY 64
Query: 720 PLTPTYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
P + +G+ ++ QGG T L+ L+D + + +Q
Sbjct: 65 PFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGAREQ 113
>pdb|3PPX|A Chain A, Crystal Structure Of The N1602a Mutant Of An Engineered
Vwf A2 Domain (N1493c And C1670s)
Length = 196
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 663 RDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPL 719
+ C +VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++
Sbjct: 5 KRCSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY 64
Query: 720 PLTPTYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
P + +G+ ++ QGG T L+ L+D + + +Q
Sbjct: 65 PFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQ 113
>pdb|3PPV|A Chain A, Crystal Structure Of An Engineered Vwf A2 Domain (N1493c
And C1670s)
Length = 196
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 663 RDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPL 719
+ C +VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++
Sbjct: 5 KRCSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY 64
Query: 720 PLTPTYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
P + +G+ ++ QGG T L+ L+D + + +Q
Sbjct: 65 PFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQ 113
>pdb|2CT5|A Chain A, Solution Structure Of The Zinc Finger Bed Domain Of The
Zinc Finger Bed Domain Containing Protein 1
Length = 73
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 232 VWEHFTIETVSAGC----RRACCKQCKQSFAYSTGSKVAGTSHLKRHIAK 277
VW++F +T + GC ++ C+ C AYS TS+L H+ K
Sbjct: 10 VWKYFGFDTNAEGCILQWKKIYCRICMAQIAYS-----GNTSNLSYHLEK 54
>pdb|3GXB|A Chain A, Crystal Structure Of Vwf A2 Domain
pdb|3GXB|B Chain B, Crystal Structure Of Vwf A2 Domain
Length = 184
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 667 LVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPLPLTP 723
+VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++ P +
Sbjct: 1 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSE 60
Query: 724 TYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
+G+ ++ QGG T L+ L+D + + +Q
Sbjct: 61 AQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQ 105
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 207 VNTQPNNEVTSPETQPNKRRKKKSIVWEHFTIETVSAGCRRACCKQCKQSF 257
+N N E S T+PNKR ++ E F + +V GC C C F
Sbjct: 6 INLNLNGEARSIVTEPNKRL--LDLLREDFGLTSVKEGCSEGECGACTVIF 54
>pdb|3ZQK|A Chain A, Von Willebrand Factor A2 Domain With Calcium
pdb|3ZQK|B Chain B, Von Willebrand Factor A2 Domain With Calcium
pdb|3ZQK|C Chain C, Von Willebrand Factor A2 Domain With Calcium
Length = 199
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 667 LVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEY---VSLPLPLTP 723
+VL +A V++ K+ +F+ +K + ++ + + D IH L+Y V++ P +
Sbjct: 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSE 79
Query: 724 TYEEGNAGNNMKSDESQGG----TLLSDNGLTDFDMFIMETTNQQ 764
+G+ ++ QGG T L+ L+D + + +Q
Sbjct: 80 AQSKGDILQRLREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQ 124
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 419 WKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLL 478
W+ +++ + Y ES NAF A+ S+ R + G+
Sbjct: 319 WRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGN-------------- 364
Query: 479 CIKNPLILNGQLLVGNCIAHTLSSMAKDVLAAGREIVRKIRDSVKYV--KTSESHEEKFV 536
++N + G+L V A + +D++A RE+ + D + ++ +T + EEK +
Sbjct: 365 -MENAV---GRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKAL 420
Query: 537 ELKQQLQVPSE 547
+K+++ P +
Sbjct: 421 AIKERIGYPDD 431
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,337,995
Number of Sequences: 62578
Number of extensions: 1173169
Number of successful extensions: 2316
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2311
Number of HSP's gapped (non-prelim): 19
length of query: 866
length of database: 14,973,337
effective HSP length: 107
effective length of query: 759
effective length of database: 8,277,491
effective search space: 6282615669
effective search space used: 6282615669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)