Query 002914
Match_columns 866
No_of_seqs 311 out of 2076
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 13:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1121 Tam3-transposase (Ac f 100.0 9.2E-48 2E-52 462.0 51.1 534 315-860 90-636 (641)
2 PF05699 Dimer_Tnp_hAT: hAT fa 99.7 3.5E-18 7.5E-23 149.1 3.8 83 768-850 1-86 (86)
3 PF04937 DUF659: Protein of un 99.6 5.4E-15 1.2E-19 141.6 12.8 147 361-521 1-152 (153)
4 PF14291 DUF4371: Domain of un 99.5 1E-13 2.2E-18 144.4 10.5 141 327-470 69-231 (235)
5 PF14372 DUF4413: Domain of un 99.4 1.8E-12 4E-17 115.6 9.4 100 614-714 1-100 (101)
6 PF02892 zf-BED: BED zinc fing 98.6 1.8E-08 3.9E-13 75.8 2.9 44 230-279 1-44 (45)
7 smart00614 ZnF_BED BED zinc fi 98.5 1.1E-07 2.3E-12 73.1 3.9 46 231-279 1-47 (50)
8 PF10683 DBD_Tnp_Hermes: Herme 94.8 0.04 8.7E-07 43.6 3.9 34 321-354 13-46 (68)
9 PF13894 zf-C2H2_4: C2H2-type 72.9 2.1 4.5E-05 26.4 1.2 23 248-278 1-23 (24)
10 PF00096 zf-C2H2: Zinc finger, 71.5 2.1 4.6E-05 26.5 1.0 22 248-277 1-22 (23)
11 PF12874 zf-met: Zinc-finger o 62.2 4.4 9.5E-05 25.6 1.1 23 248-278 1-23 (25)
12 KOG3576 Ovo and related transc 61.3 27 0.00058 34.6 6.7 16 244-259 114-129 (267)
13 PF09237 GAGA: GAGA factor; I 60.4 5.1 0.00011 30.4 1.3 28 246-281 23-50 (54)
14 PF12017 Tnp_P_element: Transp 59.9 26 0.00057 36.4 6.9 120 341-470 85-225 (236)
15 PF13913 zf-C2HC_2: zinc-finge 52.9 7.6 0.00017 24.9 1.0 20 248-276 3-22 (25)
16 PF12171 zf-C2H2_jaz: Zinc-fin 52.8 4.2 9.2E-05 26.4 -0.1 22 248-277 2-23 (27)
17 PHA00616 hypothetical protein 51.9 5.4 0.00012 29.5 0.2 26 248-281 2-27 (44)
18 PF10551 MULE: MULE transposas 47.0 1.1E+02 0.0023 26.3 7.9 65 424-502 27-91 (93)
19 PLN03097 FHY3 Protein FAR-RED 44.8 1.8E+02 0.0039 36.2 11.8 83 412-507 305-387 (846)
20 PF13912 zf-C2H2_6: C2H2-type 42.7 17 0.00038 23.3 1.6 22 248-277 2-23 (27)
21 KOG2893 Zn finger protein [Gen 42.3 13 0.00028 37.5 1.3 28 246-276 33-60 (341)
22 PF00872 Transposase_mut: Tran 40.2 6.9 0.00015 44.0 -1.1 169 330-521 108-282 (381)
23 smart00451 ZnF_U1 U1-like zinc 39.9 11 0.00025 25.9 0.4 27 247-281 3-29 (35)
24 PHA02768 hypothetical protein; 35.7 20 0.00043 27.9 1.2 23 248-278 6-28 (55)
25 KOG1985 Vesicle coat complex C 33.8 2.4E+02 0.0052 34.4 9.9 31 223-256 219-249 (887)
26 PF04959 ARS2: Arsenite-resist 33.3 32 0.0007 35.1 2.6 36 240-283 70-105 (214)
27 PF05443 ROS_MUCR: ROS/MUCR tr 27.3 32 0.00068 32.3 1.2 24 246-280 71-94 (132)
28 KOG1074 Transcriptional repres 27.0 1.2E+02 0.0026 36.9 6.0 44 227-278 332-376 (958)
29 PF12907 zf-met2: Zinc-binding 26.2 21 0.00046 25.8 -0.1 30 248-282 2-31 (40)
30 KOG1074 Transcriptional repres 26.2 1.2E+02 0.0027 36.8 5.9 36 230-276 619-654 (958)
31 PF09416 UPF1_Zn_bind: RNA hel 26.0 44 0.00095 32.0 1.9 37 244-282 11-47 (152)
32 COG4049 Uncharacterized protei 25.9 34 0.00073 26.4 0.9 34 239-280 9-42 (65)
33 PF12756 zf-C2H2_2: C2H2 type 24.6 52 0.0011 28.4 2.1 29 247-283 50-78 (100)
34 smart00355 ZnF_C2H2 zinc finge 22.7 50 0.0011 20.2 1.2 20 249-276 2-21 (26)
No 1
>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]
Probab=100.00 E-value=9.2e-48 Score=461.97 Aligned_cols=534 Identities=40% Similarity=0.685 Sum_probs=453.4
Q ss_pred CCcccChHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHhhCCCCcccCcchhhhhhHHHHHHHHHHHHHHHHcCCCeeEE
Q 002914 315 PYISFDQDRCRHEIARMIIMHDYPLHMVEHPGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPGRFCL 394 (866)
Q Consensus 315 ~~~~~~~~~~~~~la~~i~~~~~Pfs~ve~~~F~~ll~~l~p~~~~pS~~ti~~~i~~~~~~~~~~l~~~L~~~~~~~sL 394 (866)
....+++..++++++++|+.+++||+.||+++|+.|+..++|.|.+|++.++...+...|...+..++..+....|.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~ii~~~lp~~~ve~~~~~~~~~~~~P~~~~~~~~t~~~~~~~~~~~~k~~~~~~~~~~~~~v~l 169 (641)
T KOG1121|consen 90 TRQKLDQKVIREAIARMIILHGLPLSTVEEPGFRELLKHLNPNYKLPSRSTLEADVLKIYEAEKPKLKEILEKIIGRVSL 169 (641)
T ss_pred ccccchHHHHHHHHHHHHHhcCCChhhccchhHHHHHHhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHccCCceEE
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred eeeccccc-CCceEEEEEEEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHh
Q 002914 395 TLDLWTSN-QTLGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDC 473 (866)
Q Consensus 395 ~~D~Wt~~-~~~~~L~v~vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~ 473 (866)
++|.|++. .+..|+++++||+|.+|+++..+|++. +...|+++.|+..+..++.+|+|.+++..++.|| .+...+..
T Consensus 170 T~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~-~~~~~~~~~i~~~~~~~~~~~~i~~kv~~~~~~n-~~~~~~~~ 247 (641)
T KOG1121|consen 170 TTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFC-IPPPHLGKALASVLNECLLEWGIEKKVFSITVDN-VNVSNIET 247 (641)
T ss_pred EEeeecCCCCCcceEEEEEEEeccchHhhhheeeee-cCCcchHHHHHHHHHHHHHhhChhheEEEEeecc-cchhHHHH
Confidence 99999987 679999999999999999999999999 6667999999999999999999999999999999 44445566
Q ss_pred hHHhhhhcCCcccCCceeeeechhHHHHHHHHHHH-HhhHHHHHHHhhhccccccChHHHHHHHHHHHHhcCCCCCcccc
Q 002914 474 LRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVL-AAGREIVRKIRDSVKYVKTSESHEEKFVELKQQLQVPSEKSLSL 552 (866)
Q Consensus 474 l~~~l~~~~~l~~~~~~~~i~C~aH~LnL~v~~~l-~~i~~~l~k~~~iv~~~~~S~~~~~~l~~~~~~l~~~~~~~L~~ 552 (866)
++..+...+.+.+.+.+.+++|++|.+|+++++++ ..+..++.++++.+++++.+..+...|...+...+.+.. .+..
T Consensus 248 ~~~~l~~~~~~~~~~~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~~f~~~~~~~~~~~~-~~~~ 326 (641)
T KOG1121|consen 248 LRDHLKSSNALLLLGKFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRESSFEECQEQLGIPSD-VLLL 326 (641)
T ss_pred hhHHHhhcccceecceeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccc-cccc
Confidence 66666666677778888999999999999999999 689999999999999999999999999999998877664 3333
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhHHHHHHH
Q 002914 553 DDQTKWNTTYHMLVAASELKEVFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANILTTTTSPTGITFFHEAWKI 632 (866)
Q Consensus 553 ~~~TRW~S~~~mL~~~l~~~~~i~~l~~~~~~~~~~ls~~ew~~l~~l~~iL~pf~~~t~~lq~~~~~tis~vl~~l~~l 632 (866)
+..+||++++.|+.++++++.+|..+...+..+...+++++|..++.++.+|+||.+.+..+++..+++...+++.++.+
T Consensus 327 d~~~~w~st~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~ts~~~~~~i~~i 406 (641)
T KOG1121|consen 327 DVSTRWNSTYLMLSRALKLKDAFSKLEEEDKSYKSYPSDEEWNRLEELCDFLQPFSEVTKLLSGSSYPTSNQYFPEIWKI 406 (641)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 78999999999999999999999999887777777889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHHHHh-hhhhHHHHHHhcCccccchhhhhhhccccC---CChhHHHHHHHHHHH
Q 002914 633 LSDLTRSVTNEDPFVSSISKGMLEKIDKYWR-DCCLVLAIAVVMDPRFKMKLVEFSFTKIYG---DDAPTYIKIVDDGIH 708 (866)
Q Consensus 633 ~~~L~~~~~~~~~~~~~l~~~l~~~f~~~~~-~~~~~~~iA~~LdPr~k~~~~~~~~~~~~~---~~~~~~i~~v~~~l~ 708 (866)
...+.......+..+..++..+.++|++||. ..+.++.+|++||||||..++.+.+.+.++ .........+.+.++
T Consensus 407 ~~~l~~~~~~~~~~~~~~a~~m~~k~dk~~~~~~~~~~~~atvlDPR~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 486 (641)
T KOG1121|consen 407 ENLLKTYASGEDEVVRSMAEEMFEKFDKYWSYSICDLLAIATLLDPRFKLKLLESSFEKLYGKDPEDAKEKVESVRDKLK 486 (641)
T ss_pred HHHHHhcccCccHHHHHHHHHHHHHhhhhcccchhHHHHHHHhcChHhHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH
Confidence 9888877777788899999999999999997 335788999999999999999988888765 345556666788899
Q ss_pred HHHHHHhcC-CCCCCCCcccCCCCCCCCCCCCcCCCc-cCCCCCchhhhhhhh-hhhhhhHHHHHHHHhcC---CCCCCC
Q 002914 709 ELFLEYVSL-PLPLTPTYEEGNAGNNMKSDESQGGTL-LSDNGLTDFDMFIME-TTNQQMKSELDQYLDES---LLPRAH 782 (866)
Q Consensus 709 ~l~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~f~~~~~~-~~~~~~~~El~~Yl~~~---~~~~~~ 782 (866)
.++.+|... +........... ...... ........|...... .......++|+.|+++. ..+...
T Consensus 487 ~l~~~y~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~e~~~~~~~~~~ 557 (641)
T KOG1121|consen 487 KLLEEYKQLSPSNVSNSAHSWD---------LLDESPLEKDAFEYLFEPEVSIDSGSKSGKSELDHYLSESPRLLMPSFL 557 (641)
T ss_pred HHHHHHhccCCCCCCccccccc---------cccccccccchhhhhhhHHHHHHhcCCCCCchHHHHHhhhhhhhccccc
Confidence 999999864 111111000000 000000 011122223222222 22245678999999986 444456
Q ss_pred CCChhhHHhhcCCCcchHHHHHHHHccccCCCcccccccccccccccccccCCCHHHHHHHHHhhcccccCCC-CCcch
Q 002914 783 DFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALICAKDWFQYGSS-EGSNA 860 (866)
Q Consensus 783 ~~dpL~wW~~~~~~fP~La~lA~~~LsiPaSSa~~ER~FS~~~~i~t~~RnrL~~e~le~Ll~lk~~l~~~~~-~~~~~ 860 (866)
..++|+||+.+..+||.|+.+|+++|++|++++..|+.||..++++++.|++|.+.+++.|+|.++|++.+.. +...+
T Consensus 558 ~~~~l~~w~~~~~~y~~ls~~a~d~l~~p~~~~~~e~~f~~~~~~~~~~r~~l~~~~~~~l~c~~~~~~~~~~~~~~~~ 636 (641)
T KOG1121|consen 558 DADVLQWWKGNGTRYPELSSMARDILSIPITSVASESSFSIGGRVLNKYRSRLLPENVQALICTRNWLPGFTELENDIE 636 (641)
T ss_pred cccHHHHhhccCcccchHHHHHHHHHcCcccCccchhhcccCceecCchhccCCchhhHHhhchHhhhhhhcccCcccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999988 44433
No 2
>PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation domain forms extremely stable dimers in vitro [].; GO: 0046983 protein dimerization activity; PDB: 2BW3_A.
Probab=99.71 E-value=3.5e-18 Score=149.14 Aligned_cols=83 Identities=46% Similarity=0.800 Sum_probs=63.3
Q ss_pred HHHHHHhc-CCCCCC--CCCChhhHHhhcCCCcchHHHHHHHHccccCCCcccccccccccccccccccCCCHHHHHHHH
Q 002914 768 ELDQYLDE-SLLPRA--HDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALI 844 (866)
Q Consensus 768 El~~Yl~~-~~~~~~--~~~dpL~wW~~~~~~fP~La~lA~~~LsiPaSSa~~ER~FS~~~~i~t~~RnrL~~e~le~Ll 844 (866)
||++|+.+ +..+.. ...||++||+.++..||.|+++|+++|++|+||+.|||+||.++.++++.|++|+.+++++|+
T Consensus 1 El~~y~~e~~~~~~~~~~~~~~l~~W~~~~~~fP~L~~lA~~~Lsip~ss~~~ER~FS~~~~~~~~~r~~l~~~~~~~l~ 80 (86)
T PF05699_consen 1 ELDRYLSELPCLPRNKKSDMDPLEWWKQNSSRFPNLAKLARKYLSIPASSASSERSFSAMGKILTRNRNRLSPENVEALL 80 (86)
T ss_dssp -HHHHHT------T----T--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHH
T ss_pred CHHHHHhCCCcccccccCCCCHHHHHHHCchhchHHHHHHHHHHHhhccccccccccchhhcccccCccCCCHHHHHhhh
Confidence 78999998 666543 257999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 002914 845 CAKDWF 850 (866)
Q Consensus 845 ~lk~~l 850 (866)
|++.||
T Consensus 81 ~l~~nl 86 (86)
T PF05699_consen 81 FLKSNL 86 (86)
T ss_dssp HHHH--
T ss_pred ceeccC
Confidence 999986
No 3
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=99.61 E-value=5.4e-15 Score=141.62 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=113.6
Q ss_pred cCcchhhhh-hHHHHHHHHHHHHHHHHcC-CCeeEEeeecccccCCceEEEEEEEEEcCCceEEEEEEeecccC-CCCcH
Q 002914 361 VSFNTVQGD-CVATYLREKQSLMKFIEGI-PGRFCLTLDLWTSNQTLGYVFITGHFIDSEWKLQRRILNVVMEP-YPESD 437 (866)
Q Consensus 361 pS~~ti~~~-i~~~~~~~~~~l~~~L~~~-~~~~sL~~D~Wt~~~~~~~L~v~vhfid~~~~~~~~~L~~~~l~-~~~t~ 437 (866)
||++.++.. |.+.+.+++..++...+.- ..+++|++|+|+|..++.++++.+++..+.+ ||...... ..+++
T Consensus 1 PS~~~Lr~~lL~~~~~~v~~~~~~~k~~w~~~Gcsi~~DgWtd~~~~~lInf~v~~~~g~~-----Flksvd~s~~~~~a 75 (153)
T PF04937_consen 1 PSYHELRGPLLDKEYKEVKEQVKEHKKSWKRTGCSIMSDGWTDRKGRSLINFMVYCPEGTV-----FLKSVDASSIIKTA 75 (153)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEecCcCCCCCeEEEEEEEcccccE-----EEEEEecccccccH
Confidence 788889988 5677777766665433321 1479999999999999999999998875443 33333332 34899
Q ss_pred HHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHhhHHhhhhcCCcccCCceeeeechhHHHHHHHHHHHH--hhHHHH
Q 002914 438 NAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLA--AGREIV 515 (866)
Q Consensus 438 e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~l~~~l~~~~~l~~~~~~~~i~C~aH~LnL~v~~~l~--~i~~~l 515 (866)
+.|++.|.+++++.|-. +|++|+|||++|+... .+.+.++++ ++++.+|++|++||+++|+.+ .+++++
T Consensus 76 ~~l~~ll~~vIeeVG~~-nVvqVVTDn~~~~~~a---~~~L~~k~p-----~ifw~~CaaH~inLmledi~k~~~i~~vi 146 (153)
T PF04937_consen 76 EYLFELLDEVIEEVGEE-NVVQVVTDNASNMKKA---GKLLMEKYP-----HIFWTPCAAHCINLMLEDIGKLPWIKEVI 146 (153)
T ss_pred HHHHHHHHHHHHHhhhh-hhhHHhccCchhHHHH---HHHHHhcCC-----CEEEechHHHHHHHHHHHHhcChHHHHHH
Confidence 99999999999999865 6999999999776433 445565555 899999999999999999865 677888
Q ss_pred HHHhhh
Q 002914 516 RKIRDS 521 (866)
Q Consensus 516 ~k~~~i 521 (866)
++++.|
T Consensus 147 ~~ak~i 152 (153)
T PF04937_consen 147 EKAKAI 152 (153)
T ss_pred HhcccC
Confidence 888765
No 4
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=99.48 E-value=1e-13 Score=144.43 Aligned_cols=141 Identities=15% Similarity=0.220 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCCCccc-------CCHHHHHHHHhh---CCCC-----------cccCcchhhhhhHHHHHHHHHHHHHHH
Q 002914 327 EIARMIIMHDYPLHMV-------EHPGFITFVQNL---QPRF-----------DKVSFNTVQGDCVATYLREKQSLMKFI 385 (866)
Q Consensus 327 ~la~~i~~~~~Pfs~v-------e~~~F~~ll~~l---~p~~-----------~~pS~~ti~~~i~~~~~~~~~~l~~~L 385 (866)
.+++|++++|+||.-- +...|+++++.+ +|.. ..-+..++++.|..+...+++.|.+++
T Consensus 69 ~~i~fL~~QgLa~RGh~e~~~s~n~GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~iq~~i~~~a~~v~~~I~~~v 148 (235)
T PF14291_consen 69 DVILFLARQGLAFRGHDESEDSLNNGNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTIQNEIEILADHVRQSIVEEV 148 (235)
T ss_pred HHHHHHHhcccccccCCccccccccccHHHHHHHHHhhcccchhhhhcccccceeccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678999999999543 234799988765 2221 222456677778667778888999999
Q ss_pred HcCCCeeEEeeecccccCCceEEEEEEEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCC-CceEEEEeCC
Q 002914 386 EGIPGRFCLTLDLWTSNQTLGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLE-GRVFSLTFGH 464 (866)
Q Consensus 386 ~~~~~~~sL~~D~Wt~~~~~~~L~v~vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~-~kv~~i~tDn 464 (866)
++ .+|||++|+++|.++..+|+|++||++.++.+++.||+|.+++. .||+.|++.|.++|+++||+ ++|+|++|||
T Consensus 149 ~~--~~FSii~DettDis~~eQl~i~vRyv~~~~~i~E~Fl~f~~~~~-~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDg 225 (235)
T PF14291_consen 149 KS--KYFSIIVDETTDISNKEQLSICVRYVDKDGKIKERFLGFVELED-TTAESLFNAIKDVLEKLGLDLSNCRGQCYDG 225 (235)
T ss_pred cc--cceeeeeeccccccccchhhheeeeeccCcceeeeeeeeeccCC-ccHHHHHHHHHHHHHHcCCCHHHcCcccccC
Confidence 86 49999999999999999999999999988899999999999976 89999999999999999999 8999999999
Q ss_pred CCChhh
Q 002914 465 PLPEAG 470 (866)
Q Consensus 465 asn~~~ 470 (866)
|+||.|
T Consensus 226 as~M~G 231 (235)
T PF14291_consen 226 ASNMSG 231 (235)
T ss_pred hHhhee
Confidence 977654
No 5
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=99.38 E-value=1.8e-12 Score=115.59 Aligned_cols=100 Identities=48% Similarity=0.878 Sum_probs=93.6
Q ss_pred hcccCCCCchhhHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCccccchhhhhhhccccC
Q 002914 614 LTTTTSPTGITFFHEAWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRDCCLVLAIAVVMDPRFKMKLVEFSFTKIYG 693 (866)
Q Consensus 614 lq~~~~~tis~vl~~l~~l~~~L~~~~~~~~~~~~~l~~~l~~~f~~~~~~~~~~~~iA~~LdPr~k~~~~~~~~~~~~~ 693 (866)
++|..+||++.+++.++.+...|.+ ..+.+..++.++..|.++|++||.+.+.++.+|++||||||..++++.+.+.++
T Consensus 1 ~S~~~~pTsn~~f~~i~~i~~~l~~-~~~~d~~l~~ma~~M~~KfdKYw~~~~~~l~ia~ILDPR~Kl~~~~~~~~~~~~ 79 (101)
T PF14372_consen 1 FSGSSYPTSNLYFHEIWKIKDLLRD-WNNDDPDLKNMAKKMKEKFDKYWKDCNLLLAIATILDPRFKLEFLEFCFSKLYG 79 (101)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999988 446688999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 002914 694 DDAPTYIKIVDDGIHELFLEY 714 (866)
Q Consensus 694 ~~~~~~i~~v~~~l~~l~~~y 714 (866)
+++...++.+++.+.++|.+|
T Consensus 80 ~~~~~~~~~v~~~l~~Lf~~Y 100 (101)
T PF14372_consen 80 SDAKEKIEEVRDKLYELFDEY 100 (101)
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988
No 6
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=98.64 E-value=1.8e-08 Score=75.77 Aligned_cols=44 Identities=45% Similarity=0.762 Sum_probs=31.2
Q ss_pred ccccccceeeeecCCcceEEeccCCCCcccCCCCcCccchHHHHhHhcCC
Q 002914 230 SIVWEHFTIETVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGT 279 (866)
Q Consensus 230 S~vW~~F~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h 279 (866)
|+||+||.... ++...++|++|++.+++. ++||++|++||...|
T Consensus 1 S~vW~~F~~~~--~~~~~a~C~~C~~~~~~~----~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 1 SPVWKHFTKIP--GDKKKAKCKYCGKVIKYS----SGGTSNLKRHLKKKH 44 (45)
T ss_dssp GGCCCCCEE----GCSS-EEETTTTEE---------SSTHHHHHHHHHTT
T ss_pred CCccccEEEcc--CCcCeEEeCCCCeEEeeC----CCcHHHHHHhhhhhC
Confidence 78999999985 556799999999999865 348999999996543
No 7
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=98.50 E-value=1.1e-07 Score=73.07 Aligned_cols=46 Identities=39% Similarity=0.743 Sum_probs=36.6
Q ss_pred cccccceee-eecCCcceEEeccCCCCcccCCCCcCccchHHHHhHhcCC
Q 002914 231 IVWEHFTIE-TVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGT 279 (866)
Q Consensus 231 ~vW~~F~~~-~~~~~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h 279 (866)
.||+||..+ ...+|..+|.|++|++.+++.. .+|||+|++|+...|
T Consensus 1 ~vW~~F~~i~~~~~g~~~a~C~~C~~~l~~~~---~~gTs~L~rHl~~~h 47 (50)
T smart00614 1 KVWKHFTLILEKDNGKQRAKCKYCGKKLSRSS---KGGTSNLRRHLRRKH 47 (50)
T ss_pred CcCccceEEEEcCCCCeEEEecCCCCEeeeCC---CCCcHHHHHHHHhHC
Confidence 489999984 3345668999999999998653 269999999998633
No 8
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=94.83 E-value=0.04 Score=43.61 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHhh
Q 002914 321 QDRCRHEIARMIIMHDYPLHMVEHPGFITFVQNL 354 (866)
Q Consensus 321 ~~~~~~~la~~i~~~~~Pfs~ve~~~F~~ll~~l 354 (866)
.+++.++++.|++++..||++|++.||+++++.+
T Consensus 13 K~~~~~k~~qw~v~dcRpfsiv~gsGfk~la~~l 46 (68)
T PF10683_consen 13 KKEATDKCTQWCVKDCRPFSIVSGSGFKKLAQFL 46 (68)
T ss_dssp HHHHHHHHHHHHHHCT--GGGGG-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcceeeccccHHHHHHHH
Confidence 4678899999999999999999999999998865
No 9
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=72.94 E-value=2.1 Score=26.45 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.4
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhcC
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAKG 278 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~ 278 (866)
..|.+|++.+. ....|++|+...
T Consensus 1 ~~C~~C~~~~~--------~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFR--------SKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EES--------SHHHHHHHHHHH
T ss_pred CCCcCCCCcCC--------cHHHHHHHHHhh
Confidence 47999999884 467899998754
No 10
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=71.51 E-value=2.1 Score=26.48 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=17.9
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhc
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAK 277 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~ 277 (866)
..|..|++.+. ..++|++|++.
T Consensus 1 y~C~~C~~~f~--------~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFS--------SKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEES--------SHHHHHHHHHH
T ss_pred CCCCCCCCccC--------CHHHHHHHHhH
Confidence 47999999984 46899999874
No 11
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=62.19 E-value=4.4 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.693 Sum_probs=18.3
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhcC
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAKG 278 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~ 278 (866)
+.|..|++.+. +...++.|++++
T Consensus 1 ~~C~~C~~~f~--------s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFS--------SENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEES--------SHHHHHHHHTTH
T ss_pred CCCCCCCCCcC--------CHHHHHHHHCcC
Confidence 47999998874 567899999753
No 12
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=61.28 E-value=27 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=12.3
Q ss_pred CcceEEeccCCCCccc
Q 002914 244 GCRRACCKQCKQSFAY 259 (866)
Q Consensus 244 ~~~~~~C~~C~~~~~~ 259 (866)
+.....|..|+|.|..
T Consensus 114 d~d~ftCrvCgK~F~l 129 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGL 129 (267)
T ss_pred CCCeeeeehhhhhhhH
Confidence 3567899999988754
No 13
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=60.38 E-value=5.1 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=18.3
Q ss_pred ceEEeccCCCCcccCCCCcCccchHHHHhHhcCCCc
Q 002914 246 RRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCP 281 (866)
Q Consensus 246 ~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~ 281 (866)
.-+.|-.|+..++ ..-||+||+...|..
T Consensus 23 ~PatCP~C~a~~~--------~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 23 QPATCPICGAVIR--------QSRNLRRHLEIRHFK 50 (54)
T ss_dssp --EE-TTT--EES--------SHHHHHHHHHHHTTT
T ss_pred CCCCCCcchhhcc--------chhhHHHHHHHHhcc
Confidence 3589999999985 457999999865543
No 14
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=59.90 E-value=26 Score=36.38 Aligned_cols=120 Identities=9% Similarity=0.018 Sum_probs=66.1
Q ss_pred ccCCHHHHHHHHhhCCCCcccCcchhhhhhHHH------HHHHHHHHHH-HHHcCCCeeEEeeecccccCCc--------
Q 002914 341 MVEHPGFITFVQNLQPRFDKVSFNTVQGDCVAT------YLREKQSLMK-FIEGIPGRFCLTLDLWTSNQTL-------- 405 (866)
Q Consensus 341 ~ve~~~F~~ll~~l~p~~~~pS~~ti~~~i~~~------~~~~~~~l~~-~L~~~~~~~sL~~D~Wt~~~~~-------- 405 (866)
..--.+++-|.+ .+|.+||..|+++.+..+ ...+...+.. .+......+.|++|+-.=....
T Consensus 85 ~~spr~Y~yL~k---k~~pLPs~rTL~r~l~~v~~~pGi~~~il~~l~~~~~~~~dr~CvL~fDEm~l~~~~eYD~~~d~ 161 (236)
T PF12017_consen 85 KCSPRAYNYLRK---KGYPLPSVRTLQRWLSKVNIDPGILDFILDLLKNKSMSEEDRICVLSFDEMKLSPHLEYDPSRDE 161 (236)
T ss_pred ecChHHHHHHHH---cCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHHHccCchhccEEEEEEeEEEccceeeeccccCc
Confidence 344445555553 378999999998876543 1222222221 2222234688889975421111
Q ss_pred -----eE-EEEEEEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhh
Q 002914 406 -----GY-VFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAG 470 (866)
Q Consensus 406 -----~~-L~v~vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~ 470 (866)
+| +.+.++-+...|+.--.+ +| ....+++.|.+.| .-|.+.|+. |+++++|.+++|..
T Consensus 162 v~~~~~~~~v~mvrGl~~~WKQpi~~-~f---~t~m~~~~l~~iI-~~l~~~g~~--VvAivsD~g~~N~~ 225 (236)
T PF12017_consen 162 VNEPANYVQVFMVRGLFKSWKQPIYF-DF---DTSMDADILKNII-EKLHEIGYN--VVAIVSDMGSNNIS 225 (236)
T ss_pred ccChhhhhhHHHHHHHHhcCCccEEE-Ee---cCcCCHHHHHHHH-HHHHHCCCE--EEEEECCCCcchHH
Confidence 11 233444455667543322 33 3345666665544 556777774 99999999976643
No 15
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=52.93 E-value=7.6 Score=24.90 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=17.0
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHh
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIA 276 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~ 276 (866)
..|.+|+..| +...|.+|..
T Consensus 3 ~~C~~CgR~F---------~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF---------NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE---------CHHHHHHHHH
Confidence 5799999988 4678999987
No 16
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=52.83 E-value=4.2 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=17.7
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhc
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAK 277 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~ 277 (866)
..|..|++.+. +...+..|+++
T Consensus 2 ~~C~~C~k~f~--------~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFS--------SENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBS--------SHHHHHCCTTS
T ss_pred CCcccCCCCcC--------CHHHHHHHHcc
Confidence 57999998884 56788999875
No 17
>PHA00616 hypothetical protein
Probab=51.88 E-value=5.4 Score=29.48 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhcCCCc
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCP 281 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~ 281 (866)
.+|-.||+.+. ..++|.+|+.++|..
T Consensus 2 YqC~~CG~~F~--------~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCLRCGGIFR--------KKKEVIEHLLSVHKQ 27 (44)
T ss_pred CccchhhHHHh--------hHHHHHHHHHHhcCC
Confidence 36999999884 468999999865543
No 18
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=47.04 E-value=1.1e+02 Score=26.27 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=38.8
Q ss_pred EEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHhhHHhhhhcCCcccCCceeeeechhHHHHH
Q 002914 424 RILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSS 502 (866)
Q Consensus 424 ~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~l~~~l~~~~~l~~~~~~~~i~C~aH~LnL 502 (866)
.++++.-+.. .+.+.+...+..+.+.++. . ...|++|.. .++.++++.-.| +..+..|.-|.+..
T Consensus 27 ~~v~~~l~~~-e~~~~~~~~l~~~~~~~~~-~-p~~ii~D~~------~~~~~Ai~~vfP-----~~~~~~C~~H~~~n 91 (93)
T PF10551_consen 27 FPVAFALVSS-ESEESYEWFLEKLKEAMPQ-K-PKVIISDFD------KALINAIKEVFP-----DARHQLCLFHILRN 91 (93)
T ss_pred EEEEEEEEcC-CChhhhHHHHHHhhhcccc-C-ceeeecccc------HHHHHHHHHHCC-----CceEehhHHHHHHh
Confidence 3566655544 5666666555544444333 2 668899998 333444443222 56789999998764
No 19
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=44.83 E-value=1.8e+02 Score=36.24 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHhhHHhhhhcCCcccCCcee
Q 002914 412 GHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLL 491 (866)
Q Consensus 412 vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~l~~~l~~~~~l~~~~~~~ 491 (866)
+-|+.-+.-.+..++||.-+.+ .+.+...=++...|+..|-. .=..|+||.. ..+++++...-| +..
T Consensus 305 a~FvGvNhH~qtvlfGcaLl~d-Et~eSf~WLf~tfl~aM~gk-~P~tIiTDqd------~am~~AI~~VfP-----~t~ 371 (846)
T PLN03097 305 ALFVGVNQHYQFMLLGCALISD-ESAATYSWLMQTWLRAMGGQ-APKVIITDQD------KAMKSVISEVFP-----NAH 371 (846)
T ss_pred EEEEEecCCCCeEEEEEEEccc-CchhhHHHHHHHHHHHhCCC-CCceEEecCC------HHHHHHHHHHCC-----Cce
Confidence 3344333345677888877755 44444332233333333322 2356889998 333444433222 667
Q ss_pred eeechhHHHHHHHHHH
Q 002914 492 VGNCIAHTLSSMAKDV 507 (866)
Q Consensus 492 ~i~C~aH~LnL~v~~~ 507 (866)
|-.|.-|++..+.+..
T Consensus 372 Hr~C~wHI~~~~~e~L 387 (846)
T PLN03097 372 HCFFLWHILGKVSENL 387 (846)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 8899999998776553
No 20
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=42.69 E-value=17 Score=23.29 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=18.0
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhc
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAK 277 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~ 277 (866)
..|..|++.+. ....|..|.+.
T Consensus 2 ~~C~~C~~~F~--------~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFS--------SLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEES--------SHHHHHHHHCT
T ss_pred CCCCccCCccC--------ChhHHHHHhHH
Confidence 47999999984 56899999964
No 21
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=42.25 E-value=13 Score=37.46 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=18.4
Q ss_pred ceEEeccCCCCcccCCCCcCccchHHHHhHh
Q 002914 246 RRACCKQCKQSFAYSTGSKVAGTSHLKRHIA 276 (866)
Q Consensus 246 ~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~ 276 (866)
+.++|.+|++++..+.| .+..++.-|-.
T Consensus 33 khfkchichkkl~sgpg---lsihcmqvhke 60 (341)
T KOG2893|consen 33 KHFKCHICHKKLFSGPG---LSIHCMQVHKE 60 (341)
T ss_pred ccceeeeehhhhccCCC---ceeehhhhhhh
Confidence 47999999999864433 34455555544
No 22
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=40.19 E-value=6.9 Score=44.04 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=92.4
Q ss_pred HHHHHhcCCCcccCCHHHHHHHHhhCCCCcccCcchhhhhhHHHHHHHHHHHHHHHHcCCCeeEEeeecccccC--Cc--
Q 002914 330 RMIIMHDYPLHMVEHPGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPGRFCLTLDLWTSNQ--TL-- 405 (866)
Q Consensus 330 ~~i~~~~~Pfs~ve~~~F~~ll~~l~p~~~~pS~~ti~~~i~~~~~~~~~~l~~~L~~~~~~~sL~~D~Wt~~~--~~-- 405 (866)
-.++..|+.-.-++ +.++.+.... -.|..++.+....+.+.+..=-...|...+ +..|.+|+-.-.- +.
T Consensus 108 ~~ly~~G~Str~i~-----~~l~~l~g~~-~~S~s~vSri~~~~~~~~~~w~~R~L~~~~-y~~l~iD~~~~kvr~~~~~ 180 (381)
T PF00872_consen 108 ISLYLKGVSTRDIE-----EALEELYGEV-AVSKSTVSRITKQLDEEVEAWRNRPLESEP-YPYLWIDGTYFKVREDGRV 180 (381)
T ss_pred hhhhcccccccccc-----chhhhhhccc-ccCchhhhhhhhhhhhhHHHHhhhcccccc-ccceeeeeeeccccccccc
Confidence 33455566554433 3444432211 267888877666666655544445566543 7889999754321 11
Q ss_pred -eEEEEEEEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHhhHHhhhhcCCc
Q 002914 406 -GYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLLCIKNPL 484 (866)
Q Consensus 406 -~~L~v~vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~l~~~l~~~~~l 484 (866)
+--.+.+--|+.++ +..+||+..... .+...- ..|..-|.+-|+.. +.-+++||. .++.+.+....|
T Consensus 181 ~~~~~~v~iGi~~dG--~r~vLg~~~~~~-Es~~~W-~~~l~~L~~RGl~~-~~lvv~Dg~------~gl~~ai~~~fp- 248 (381)
T PF00872_consen 181 VKKAVYVAIGIDEDG--RREVLGFWVGDR-ESAASW-REFLQDLKERGLKD-ILLVVSDGH------KGLKEAIREVFP- 248 (381)
T ss_pred ccchhhhhhhhhccc--ccceeeeecccC-CccCEe-eecchhhhhccccc-cceeecccc------cccccccccccc-
Confidence 11112222344443 357888876543 222222 22333446668864 777889998 566666654433
Q ss_pred ccCCceeeeechhHHHHHHHHHHHHhh-HHHHHHHhhh
Q 002914 485 ILNGQLLVGNCIAHTLSSMAKDVLAAG-REIVRKIRDS 521 (866)
Q Consensus 485 ~~~~~~~~i~C~aH~LnL~v~~~l~~i-~~~l~k~~~i 521 (866)
...+..|..|.+..+...+-+.- ..+...++.+
T Consensus 249 ----~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I 282 (381)
T PF00872_consen 249 ----GAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAI 282 (381)
T ss_pred ----chhhhhheechhhhhccccccccchhhhhhcccc
Confidence 56778999999887766553322 2333444444
No 23
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=39.89 E-value=11 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEeccCCCCcccCCCCcCccchHHHHhHhcCCCc
Q 002914 247 RACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCP 281 (866)
Q Consensus 247 ~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~ 281 (866)
...|.+|++.+. +...++.|+.++.+.
T Consensus 3 ~~~C~~C~~~~~--------~~~~~~~H~~gk~H~ 29 (35)
T smart00451 3 GFYCKLCNVTFT--------DEISVEAHLKGKKHK 29 (35)
T ss_pred CeEccccCCccC--------CHHHHHHHHChHHHH
Confidence 368999999884 467889999865443
No 24
>PHA02768 hypothetical protein; Provisional
Probab=35.74 E-value=20 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhcC
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAKG 278 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~ 278 (866)
..|..|++.++. .++|.+|++++
T Consensus 6 y~C~~CGK~Fs~--------~~~L~~H~r~H 28 (55)
T PHA02768 6 YECPICGEIYIK--------RKSMITHLRKH 28 (55)
T ss_pred cCcchhCCeecc--------HHHHHHHHHhc
Confidence 589999999963 46888888863
No 25
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.82 E-value=2.4e+02 Score=34.38 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=20.3
Q ss_pred CcCCcccccccccceeeeecCCcceEEeccCCCC
Q 002914 223 NKRRKKKSIVWEHFTIETVSAGCRRACCKQCKQS 256 (866)
Q Consensus 223 ~k~~~~~S~vW~~F~~~~~~~~~~~~~C~~C~~~ 256 (866)
.+=|+.++.+--|-... +.| .+|+|+.|+..
T Consensus 219 vRCr~CRtYiNPFV~fi--d~g-r~WrCNlC~~~ 249 (887)
T KOG1985|consen 219 VRCRRCRTYINPFVEFI--DQG-RRWRCNLCGRV 249 (887)
T ss_pred eeehhhhhhcCCeEEec--CCC-ceeeechhhhh
Confidence 34466777776664443 333 48999999865
No 26
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=33.32 E-value=32 Score=35.07 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=24.8
Q ss_pred eecCCcceEEeccCCCCcccCCCCcCccchHHHHhHhcCCCccc
Q 002914 240 TVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPAL 283 (866)
Q Consensus 240 ~~~~~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~~~ 283 (866)
....+..++.|..|+|.|. |..=.++|+..+|...+
T Consensus 70 ~~e~~~~K~~C~lc~KlFk--------g~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 70 TKEEDEDKWRCPLCGKLFK--------GPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp E-SSSSEEEEE-SSS-EES--------SHHHHHHHHHHH-HHHH
T ss_pred HHHHcCCEECCCCCCcccC--------ChHHHHHHHhhcCHHHH
Confidence 3344567999999998884 67788999998887654
No 27
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=27.35 E-value=32 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=14.6
Q ss_pred ceEEeccCCCCcccCCCCcCccchHHHHhHhcCCC
Q 002914 246 RRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTC 280 (866)
Q Consensus 246 ~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~ 280 (866)
...+|-.||+.+. .|+|||.++|.
T Consensus 71 d~i~clecGk~~k-----------~LkrHL~~~~g 94 (132)
T PF05443_consen 71 DYIICLECGKKFK-----------TLKRHLRTHHG 94 (132)
T ss_dssp S-EE-TBT--EES-----------BHHHHHHHTT-
T ss_pred CeeEEccCCcccc-----------hHHHHHHHccC
Confidence 4699999999773 47999987544
No 28
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=26.95 E-value=1.2e+02 Score=36.86 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=25.1
Q ss_pred cccccccccceeeeecCC-cceEEeccCCCCcccCCCCcCccchHHHHhHhcC
Q 002914 227 KKKSIVWEHFTIETVSAG-CRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKG 278 (866)
Q Consensus 227 ~~~S~vW~~F~~~~~~~~-~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~ 278 (866)
..+..+-.||....-..+ -.+-+|++|.+++. .-|.|.-|++++
T Consensus 332 ~~k~~~~~~~~v~~~~~~~~~khkCr~Cakvfg--------S~SaLqiHlRSH 376 (958)
T KOG1074|consen 332 LLKEKNGSYFSVEGPSEKPFFKHKCRFCAKVFG--------SDSALQIHLRSH 376 (958)
T ss_pred cCCcccccccccccCCccccccchhhhhHhhcC--------chhhhhhhhhcc
Confidence 344555557776432222 23567888888772 456677777653
No 29
>PF12907 zf-met2: Zinc-binding
Probab=26.25 E-value=21 Score=25.82 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=22.1
Q ss_pred EEeccCCCCcccCCCCcCccchHHHHhHhcCCCcc
Q 002914 248 ACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPA 282 (866)
Q Consensus 248 ~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~~ 282 (866)
.+|++|...+-... ....|+.|...+|.+.
T Consensus 2 i~C~iC~qtF~~t~-----~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 2 IICKICRQTFMQTT-----NEPQLKEHAENKHPKN 31 (40)
T ss_pred cCcHHhhHHHHhcC-----CHHHHHHHHHccCCCC
Confidence 57999997764332 4568999999888763
No 30
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=26.17 E-value=1.2e+02 Score=36.76 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=21.6
Q ss_pred ccccccceeeeecCCcceEEeccCCCCcccCCCCcCccchHHHHhHh
Q 002914 230 SIVWEHFTIETVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIA 276 (866)
Q Consensus 230 S~vW~~F~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~ 276 (866)
|..--||... .|+.-++||+|+..|.. ..|||-|+.
T Consensus 619 saLqmHyrtH---tGERPFkCKiCgRAFtT--------kGNLkaH~~ 654 (958)
T KOG1074|consen 619 SALQMHYRTH---TGERPFKCKICGRAFTT--------KGNLKAHMS 654 (958)
T ss_pred hhhhhhhhcc---cCcCccccccccchhcc--------ccchhhccc
Confidence 3333444443 35556788888877753 347777776
No 31
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=25.96 E-value=44 Score=31.99 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=24.1
Q ss_pred CcceEEeccCCCCcccCCCCcCccchHHHHhHhcCCCcc
Q 002914 244 GCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPA 282 (866)
Q Consensus 244 ~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~~ 282 (866)
....++|..|++=|-.+.| +.+.||+..||.+.++..
T Consensus 11 p~~vv~C~~c~kWFCNg~~--~~s~SHIv~HLv~srh~e 47 (152)
T PF09416_consen 11 PSCVVKCNTCNKWFCNGRG--NTSGSHIVNHLVRSRHKE 47 (152)
T ss_dssp CCCEEEETTTTEEEES--T--TSSS-HHHHHHHHHT---
T ss_pred cccEeEcCCCCcEeecCCC--CCcccHHHHHHHHccCCc
Confidence 3568999999998875443 347899999997554443
No 32
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=25.85 E-value=34 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.8
Q ss_pred eeecCCcceEEeccCCCCcccCCCCcCccchHHHHhHhcCCC
Q 002914 239 ETVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTC 280 (866)
Q Consensus 239 ~~~~~~~~~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~ 280 (866)
+...+|+....|-.|+..+.+. ....+|.+..|.
T Consensus 9 v~~RDGE~~lrCPRC~~~FR~~--------K~Y~RHVNKaH~ 42 (65)
T COG4049 9 VRDRDGEEFLRCPRCGMVFRRR--------KDYIRHVNKAHG 42 (65)
T ss_pred eeccCCceeeeCCchhHHHHHh--------HHHHHHhhHHhh
Confidence 4456888899999999998654 345677765544
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=24.62 E-value=52 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=21.5
Q ss_pred eEEeccCCCCcccCCCCcCccchHHHHhHhcCCCccc
Q 002914 247 RACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPAL 283 (866)
Q Consensus 247 ~~~C~~C~~~~~~~~~~~~~gTs~l~~Hl~~~h~~~~ 283 (866)
...|.+|++.+. +...|..|+.++++...
T Consensus 50 ~~~C~~C~~~f~--------s~~~l~~Hm~~~~H~~~ 78 (100)
T PF12756_consen 50 SFRCPYCNKTFR--------SREALQEHMRSKHHKKR 78 (100)
T ss_dssp SEEBSSSS-EES--------SHHHHHHHHHHTTTTC-
T ss_pred CCCCCccCCCCc--------CHHHHHHHHcCccCCCc
Confidence 589999999873 57899999997655443
No 34
>smart00355 ZnF_C2H2 zinc finger.
Probab=22.70 E-value=50 Score=20.16 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=15.7
Q ss_pred EeccCCCCcccCCCCcCccchHHHHhHh
Q 002914 249 CCKQCKQSFAYSTGSKVAGTSHLKRHIA 276 (866)
Q Consensus 249 ~C~~C~~~~~~~~~~~~~gTs~l~~Hl~ 276 (866)
.|..|++.+. +.+.|.+|+.
T Consensus 2 ~C~~C~~~f~--------~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFK--------SKSALKEHMR 21 (26)
T ss_pred CCCCCcchhC--------CHHHHHHHHH
Confidence 5889998773 4678889986
Done!