Citrus Sinensis ID: 002915
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | 2.2.26 [Sep-21-2011] | |||||||
| P08770 | 807 | Putative AC transposase O | N/A | no | 0.690 | 0.741 | 0.305 | 3e-73 | |
| P03010 | 839 | Putative AC9 transposase | N/A | no | 0.688 | 0.710 | 0.295 | 1e-65 | |
| O75132 | 1171 | Zinc finger BED domain-co | yes | no | 0.672 | 0.497 | 0.237 | 5e-22 | |
| Q80WQ9 | 1168 | Zinc finger BED domain-co | yes | no | 0.625 | 0.464 | 0.229 | 2e-20 | |
| O96006 | 694 | Zinc finger BED domain-co | no | no | 0.669 | 0.835 | 0.202 | 2e-15 | |
| D2EAC2 | 980 | Zinc finger BED domain-co | no | no | 0.682 | 0.603 | 0.213 | 2e-06 | |
| Q149B8 | 840 | Uncharacterized protein C | no | no | 0.095 | 0.098 | 0.301 | 2e-05 | |
| P86452 | 979 | Zinc finger BED domain-co | no | no | 0.573 | 0.507 | 0.207 | 0.0002 |
| >sp|P08770|TRA1_MAIZE Putative AC transposase OS=Zea mays PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 312/645 (48%), Gaps = 47/645 (7%)
Query: 224 KRRKK-KSIVWEHFT---IET---------VSAGCRRACCKQCKQSFAYSTGSKVAGTSH 270
KR KK S VW+HFT IE V C CK ++ + GTS
Sbjct: 134 KRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEGHH------GTSG 187
Query: 271 LKRHIAKGTCPALLRNQDNNQLTPYTPRVGGSDPPKRRYRSPSLPYISFDQDRCRHEIAR 330
+ H+ T +L++ Q L + + G D + PY +D+ ++
Sbjct: 188 FRNHLR--TSHSLVKGQ----LCLKSEKDHGKDI------NLIEPY-KYDEVVSLKKLHL 234
Query: 331 MIIMHDYPLHMVEHPGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPG 390
IIMH+YP ++VEH F+ FV++L+P F S T + + YL EK+ L ++ +
Sbjct: 235 AIIMHEYPFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQS 294
Query: 391 RFCLTLDLWTSNQTLGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISD 450
RF T+D+WTS Q Y+ +T H+ID +W LQ+RI+ + S A +
Sbjct: 295 RFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVK 354
Query: 451 WCLEGRVFSLTFGHPLPE--AGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVL 508
W +E ++F+L+ + A D + L + L+ +G C H L+ +AKD L
Sbjct: 355 WNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGL 414
Query: 509 AAGREIVRKIRDSVKYVKTSESHEEKFVELKQQLQVPSEKSLSLDDQTKWNTTYHMLVAA 568
A + KI+ V VK+S E+ ++ + + K +S D T+WN+TY ML A
Sbjct: 415 AVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDA 474
Query: 569 SELKEVFSCLDTSDPDYKEA--PSMEDWRLVETLCAFLKPLFDAANILTTTTSPTGITFF 626
K L TSDP +A P E+W++ TL LK FD +L+ T T F+
Sbjct: 475 LYYKPALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFDLTELLSGTQYSTANLFY 534
Query: 627 HEAWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRDCCLVLAIAVVMDPRFKMKLVEF 686
+I + + +E + ++ M EK +KYW+ + LA+A +DPR+K L+EF
Sbjct: 535 KGFCEIKDLIDQWCVHEKFVIRRMAVAMSEKFEKYWKVSNIALAVACFLDPRYKKILIEF 594
Query: 687 SFTKIYGDDAPTYIKIVDDGIHELFLEYVSLPLPLTPTYEEGNAGNNMKSDESQGGTLLS 746
K +GD ++ I +L+ Y S P P +++S TL+
Sbjct: 595 YMKKFHGDSYKVHVDDFVRVIRKLYQFYSSCS-PSAPK-------TKTTTNDSMDDTLM- 645
Query: 747 DNGLTDFDMFIMETT--NQQMKSELDQYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMA 804
+N +F ++ E +Q +ELD+Y+ E LL + FD+L WW+ +YP L+++A
Sbjct: 646 ENEDDEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIA 705
Query: 805 RDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALICAKDW 849
RD+L++ V +V +S F + +D YR+ L E VEALIC KDW
Sbjct: 706 RDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDW 750
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Zea mays (taxid: 4577) |
| >sp|P03010|TRAC9_MAIZE Putative AC9 transposase OS=Zea mays PE=4 SV=1 | Back alignment and function description |
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| >sp|O75132|ZBED4_HUMAN Zinc finger BED domain-containing protein 4 OS=Homo sapiens GN=ZBED4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q80WQ9|ZBED4_MOUSE Zinc finger BED domain-containing protein 4 OS=Mus musculus GN=Zbed4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O96006|ZBED1_HUMAN Zinc finger BED domain-containing protein 1 OS=Homo sapiens GN=ZBED1 PE=1 SV=1 | Back alignment and function description |
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| >sp|D2EAC2|ZBED6_MOUSE Zinc finger BED domain-containing protein 6 OS=Mus musculus GN=Zbed6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q149B8|CA170_MOUSE Uncharacterized protein C1orf170 homolog OS=Mus musculus PE=2 SV=1 | Back alignment and function description |
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| >sp|P86452|ZBED6_HUMAN Zinc finger BED domain-containing protein 6 OS=Homo sapiens GN=ZBED6 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | ||||||
| 356565167 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.742 | 0.611 | 0.0 | |
| 356546116 | 1100 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.780 | 0.608 | 0.0 | |
| 224144150 | 666 | predicted protein [Populus trichocarpa] | 0.741 | 0.963 | 0.753 | 0.0 | |
| 356561757 | 1038 | PREDICTED: zinc finger BED domain-contai | 0.966 | 0.806 | 0.596 | 0.0 | |
| 297738996 | 839 | unnamed protein product [Vitis vinifera] | 0.714 | 0.737 | 0.730 | 0.0 | |
| 224112645 | 639 | predicted protein [Populus trichocarpa] | 0.730 | 0.990 | 0.700 | 0.0 | |
| 297815386 | 654 | hypothetical protein ARALYDRAFT_323059 [ | 0.720 | 0.954 | 0.672 | 0.0 | |
| 224118238 | 639 | predicted protein [Populus trichocarpa] | 0.730 | 0.990 | 0.699 | 0.0 | |
| 75223626 | 654 | hAT-like transposase [Arabidopsis arenos | 0.737 | 0.977 | 0.660 | 0.0 | |
| 224112649 | 639 | predicted protein [Populus trichocarpa] | 0.730 | 0.990 | 0.699 | 0.0 |
| >gi|356565167|ref|XP_003550816.1| PREDICTED: uncharacterized protein LOC100783258 [Glycine max] | Back alignment and taxonomy information |
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Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/943 (61%), Positives = 696/943 (73%), Gaps = 86/943 (9%)
Query: 7 QPHDAVMTPETQPHDAVMTPETQPHNAVMTPETHLHDVMMTPETQPHDAMMSTETQPHDA 66
Q ++AV T Q ++AV++ ETQ + V+ PET D + ETQ D + +ETQ D
Sbjct: 215 QSNEAVFTEAQQSNEAVLS-ETQQSDEVILPETQQSDEAVLSETQQSDVAVLSETQQSDE 273
Query: 67 MMTPETQPHDAMMTPEIQPHDAMMIPDTQPQDQDVWMTPETQPQ---------------- 110
++T ET P++ ++ + QP+ ++ DTQP + V T ETQP
Sbjct: 274 LITYETHPNNDVVMSDAQPNSEPIMSDTQPSSETV--TRETQPSNEAVIHEAQHINDVVM 331
Query: 111 -ETEP-HDMMTPVTQPHEEMTPPETQ------------PHDGMMTPETQLNIELRESGEA 156
E P ++++ P+ +++ PE+ P D + PE+ N + S E
Sbjct: 332 SEALPENELVNSAADPNNQLSHPESLSQNHQFTNLHMIPEDQLPQPESLPNSDPLPSSEP 391
Query: 157 SNALAIPETHP--NNTLAIPETQPDN----------------AFTVPEAQPNNAFAAP-- 196
+ + + P +N LA +T P N + T+ Q N+ P
Sbjct: 392 MQDIHLTDIKPLPHNHLAQYDTLPSNHHMDHSEAVSNHQLTHSETLSHEQLANSHLLPHY 451
Query: 197 ---VSQPNNALAIVNTQP----------------------NNEVTSPETQPNKRRKKKSI 231
S+ + IVN++P N+E +PETQP+KRRKKKSI
Sbjct: 452 GLQTSETLHDHPIVNSRPHYEIVNASNIPSYEIINAETPLNSEEPTPETQPSKRRKKKSI 511
Query: 232 VWEHFTIETVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPALLRNQDNNQ 291
VWEHFTIETVS GCRRACC QCKQSFAYSTGSKVAGTSHLKRHIAKGTCPALLR QD NQ
Sbjct: 512 VWEHFTIETVSPGCRRACCMQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPALLRGQDQNQ 571
Query: 292 LTPYTPRVGGSDP-------PKRRYRSPSLPYISFDQDRCRHEIARMIIMHDYPLHMVEH 344
+ YTPR GSD PKRRYRSP+ PYI FDQDRCRHEIARMIIMHDYPLHMVEH
Sbjct: 572 FSSYTPRSRGSDAAGNASSAPKRRYRSPNTPYIIFDQDRCRHEIARMIIMHDYPLHMVEH 631
Query: 345 PGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPGRFCLTLDLWTSNQT 404
PGF+ FVQNLQPRF+ V+FNT+QGDCVATYL EKQ +MK+ +G+PGR CLTLD+WTS+Q+
Sbjct: 632 PGFVAFVQNLQPRFNMVTFNTIQGDCVATYLMEKQCVMKYFDGLPGRVCLTLDVWTSSQS 691
Query: 405 LGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGH 464
+GYVFITGHF+DS+WKLQRRILNVVMEPYP SD+A SHAVA CISDW EG++FS+T G
Sbjct: 692 VGYVFITGHFVDSDWKLQRRILNVVMEPYPNSDSALSHAVAVCISDWNFEGKLFSITCGP 751
Query: 465 PLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLAAGREIVRKIRDSVKY 524
L E L LRPLL +KNPLILNGQLL+GNCIA TLSS+A D+L++ V+KIRDSVKY
Sbjct: 752 SLSEVALGNLRPLLFVKNPLILNGQLLIGNCIAQTLSSVANDLLSSVHLTVKKIRDSVKY 811
Query: 525 VKTSESHEEKFVELKQQLQVPSEKSLSLDDQTKWNTTYHMLVAASELKEVFSCLDTSDPD 584
VKTSESHEEKF++LKQQLQVPSE++L +DDQTKWNTTY MLVAASEL+EVFSCLDTSDPD
Sbjct: 812 VKTSESHEEKFLDLKQQLQVPSERNLFIDDQTKWNTTYQMLVAASELQEVFSCLDTSDPD 871
Query: 585 YKEAPSMEDWRLVETLCAFLKPLFDAANILTTTTSPTGITFFHEAWKILSDLTRSVTNED 644
YK APSM+DW+LVETLC +LKPLFDAANILTT T PT ITFFHE WK+ DL+R+V +ED
Sbjct: 872 YKGAPSMQDWKLVETLCTYLKPLFDAANILTTATHPTVITFFHEVWKLQLDLSRAVVSED 931
Query: 645 PFVSSISKGMLEKIDKYWRDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVD 704
PF+S+++K M +KIDKYW+DC LVLAIAVVMDPRFKMKLVEFSFTKIYG+DA Y+KIVD
Sbjct: 932 PFISNLTKPMQQKIDKYWKDCSLVLAIAVVMDPRFKMKLVEFSFTKIYGEDAHEYVKIVD 991
Query: 705 DGIHELFLEYVSLPLPLTPTY-EEGNAGNNMKSDESQGGTLLSDNGLTDFDMFIMETTNQ 763
DGIHELF EYV+LPLPLTP Y EEGNAG++ ++ ES GGTL+ DNGLTDFD++IMET++
Sbjct: 992 DGIHELFHEYVALPLPLTPAYAEEGNAGSHPRAGESPGGTLMPDNGLTDFDVYIMETSSH 1051
Query: 764 QMKSELDQYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDT 823
QMKSELDQYL+ESLLPR DFD+LGWWKLNK+KYPTLSKMARDILSVPV SV +SVFDT
Sbjct: 1052 QMKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVSSVPPESVFDT 1111
Query: 824 VSKELDRYRSSLRPETVEALICAKDWFQYGSSEGSNALVKLEI 866
KE+D+YRSSLRPETVEA++CAKDW QYG++E SNA+VK+E
Sbjct: 1112 KVKEMDQYRSSLRPETVEAIVCAKDWMQYGAAEASNAIVKMEF 1154
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546116|ref|XP_003541477.1| PREDICTED: uncharacterized protein LOC100800468 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224144150|ref|XP_002325202.1| predicted protein [Populus trichocarpa] gi|222866636|gb|EEF03767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356561757|ref|XP_003549145.1| PREDICTED: zinc finger BED domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297738996|emb|CBI28241.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224112645|ref|XP_002332734.1| predicted protein [Populus trichocarpa] gi|222833156|gb|EEE71633.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297815386|ref|XP_002875576.1| hypothetical protein ARALYDRAFT_323059 [Arabidopsis lyrata subsp. lyrata] gi|297321414|gb|EFH51835.1| hypothetical protein ARALYDRAFT_323059 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224118238|ref|XP_002331504.1| predicted protein [Populus trichocarpa] gi|222873840|gb|EEF10971.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|75223626|gb|ABA18109.1| hAT-like transposase [Arabidopsis arenosa] | Back alignment and taxonomy information |
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| >gi|224112649|ref|XP_002332735.1| predicted protein [Populus trichocarpa] gi|222833157|gb|EEE71634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | ||||||
| TAIR|locus:2100809 | 696 | DAYSLEEPER "DAYSLEEPER" [Arabi | 0.680 | 0.846 | 0.619 | 1.5e-247 | |
| TAIR|locus:2027468 | 690 | AT1G18560 [Arabidopsis thalian | 0.573 | 0.720 | 0.209 | 6.6e-29 | |
| UNIPROTKB|E1BQN1 | 1172 | ZBED4 "Uncharacterized protein | 0.382 | 0.282 | 0.240 | 3.2e-22 | |
| UNIPROTKB|F1PWQ3 | 1165 | ZBED4 "Uncharacterized protein | 0.236 | 0.175 | 0.222 | 4.2e-20 | |
| RGD|1305949 | 1170 | Zbed4 "zinc finger, BED-type c | 0.236 | 0.175 | 0.212 | 7.7e-20 | |
| UNIPROTKB|O75132 | 1171 | ZBED4 "Zinc finger BED domain- | 0.526 | 0.389 | 0.227 | 2e-19 | |
| MGI|MGI:2682302 | 1168 | Zbed4 "zinc finger, BED domain | 0.236 | 0.175 | 0.212 | 1e-18 | |
| ZFIN|ZDB-GENE-041210-305 | 1249 | zbed4 "zinc finger, BED domain | 0.382 | 0.265 | 0.233 | 2.2e-16 | |
| UNIPROTKB|O96006 | 694 | ZBED1 "Zinc finger BED domain- | 0.685 | 0.855 | 0.195 | 1.4e-13 | |
| UNIPROTKB|G3X7K6 | 697 | ZBED1 "Uncharacterized protein | 0.706 | 0.878 | 0.199 | 2.9e-13 |
| TAIR|locus:2100809 DAYSLEEPER "DAYSLEEPER" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1963 (696.1 bits), Expect = 1.5e-247, Sum P(3) = 1.5e-247
Identities = 376/607 (61%), Positives = 463/607 (76%)
Query: 164 ETHPNNT-LAIPETQPDNAFTVPEAQPNNA-FAAPVSQP--NNALAIVNTQPNNEVTSPE 219
E + ++T + PETQP T E + A +P +QP AL + N + E+ SPE
Sbjct: 2 EVYNDDTEMRSPETQPIKE-TALEVYNDTAEIRSPETQPIEETALEVYN---DTEMVSPE 57
Query: 220 TQPNKRRKKKSIVWEHFTIETVSAGCRRACCKQCKQSFAYSTGSKVAGTSHLKRHIAKGT 279
TQP KRRKKKS+VWEHFTIE V CRRA CK C QSFAYS G+KVAGTSHLKRHI KGT
Sbjct: 58 TQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYSNGNKVAGTSHLKRHIFKGT 117
Query: 280 CPALLR--NQDNNQL--TPYTPRVGGSDPPKRRYRSPS--LPYISFDQDRCRHEIARMII 333
CPAL+ + DNN L TPYTP+ +D P+RRYRS + PY++F+QD+CR EIA+MII
Sbjct: 118 CPALIHTHDNDNNPLMSTPYTPK---TDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMII 174
Query: 334 MHDYPLHMVEHPGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPGRFC 393
MHDYPLHMV+HPGF++FVQ++QP FD VSFN VQGDCVATYL EKQ++MK +EGIPGRFC
Sbjct: 175 MHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFC 234
Query: 394 LTLDLWTSNQTLGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCL 453
LTLD WTS TLGYVFIT H+IDS+WK+Q+++LNV+ME YPE+D A S AVA C+S+W L
Sbjct: 235 LTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGL 294
Query: 454 EGRVFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLAAGRE 513
EG++F++TF HP + ++ +RP LCIKNP IL+GQL++GNC+A T S+AKDVL G++
Sbjct: 295 EGKLFNVTFNHPASNSAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKD 354
Query: 514 IVRKIRDSVKYVKTSESHEEKFVELKQQLQVPSEKSLSLDDQTKWNTTYHMLVAASELKE 573
+++ IRDSVK+VKTSESHEE+F ELK+QLQVPSEK LSLDDQT+WNTTY MLVAASELKE
Sbjct: 355 VIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKE 414
Query: 574 VFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANILXXXXXXXXXXFFHEAWKIL 633
VFSCLDT+DPDYK+ PS EDWR VE LC FLKPLF+A + L FFHE WK
Sbjct: 415 VFSCLDTADPDYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQ 474
Query: 634 SDLTRSVTNEDPFVSSISKGMLEKIDKYWRDCCLVLAIAVVMDPRFKMKLVEFSFTKIYG 693
SDL+R++ EDPFV+ I+K M EK+DKYWRDC LVLA+AVVMDPRFKMKLVEFSF+KI+G
Sbjct: 475 SDLSRAIAGEDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFG 534
Query: 694 DDAPTYIKIVDDGIHELFLEYVSLPLPLTPTYEEGNAGNNMKSDESQGGTLLSDNGLTDF 753
+DA IK VDDGIHELF EY++LP P T E G A + + ++ N ++
Sbjct: 535 EDAGKNIKTVDDGIHELFTEYMALPSPQNTTSEGGKA-DGLSDFDTYIMETTGQNLKSEL 593
Query: 754 DMFIMET 760
D ++ ET
Sbjct: 594 DQYLDET 600
|
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| TAIR|locus:2027468 AT1G18560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BQN1 ZBED4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PWQ3 ZBED4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| RGD|1305949 Zbed4 "zinc finger, BED-type containing 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O75132 ZBED4 "Zinc finger BED domain-containing protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2682302 Zbed4 "zinc finger, BED domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041210-305 zbed4 "zinc finger, BED domain containing 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O96006 ZBED1 "Zinc finger BED domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3X7K6 ZBED1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 866 | |||
| pfam14372 | 101 | pfam14372, DUF4413, Domain of unknown function (DU | 1e-40 | |
| pfam05699 | 82 | pfam05699, Dimer_Tnp_hAT, hAT family dimerisation | 2e-27 | |
| smart00614 | 50 | smart00614, ZnF_BED, BED zinc finger | 1e-10 | |
| pfam02892 | 43 | pfam02892, zf-BED, BED zinc finger | 3e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.003 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.004 |
| >gnl|CDD|206540 pfam14372, DUF4413, Domain of unknown function (DUF4413) | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-40
Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 614 LTTTTSPTGITFFHEAWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRDCCLVLAIAV 673
L+ ++ PT FFHE WKI L R ++D +S ++K M EK DKYW+ L+LAIAV
Sbjct: 1 LSGSSYPTANLFFHEIWKIKLLL-REWASDDDTLSEMAKAMKEKFDKYWKKINLLLAIAV 59
Query: 674 VMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEYV 715
V+DPRFK+KL+EF F+K+YGDDA YIK V D + ELF EY
Sbjct: 60 VLDPRFKLKLLEFCFSKLYGDDAEEYIKEVRDTLKELFDEYE 101
|
This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases. Length = 101 |
| >gnl|CDD|218702 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation domain | Back alignment and domain information |
|---|
| >gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| KOG1121 | 641 | consensus Tam3-transposase (Ac family) [Replicatio | 100.0 | |
| PF05699 | 86 | Dimer_Tnp_hAT: hAT family C-terminal dimerisation | 99.71 | |
| PF04937 | 153 | DUF659: Protein of unknown function (DUF 659); Int | 99.61 | |
| PF14291 | 235 | DUF4371: Domain of unknown function (DUF4371) | 99.48 | |
| PF14372 | 101 | DUF4413: Domain of unknown function (DUF4413) | 99.38 | |
| PF02892 | 45 | zf-BED: BED zinc finger; InterPro: IPR003656 Zinc | 98.64 | |
| smart00614 | 50 | ZnF_BED BED zinc finger. DNA-binding domain in chr | 98.5 | |
| PF10683 | 68 | DBD_Tnp_Hermes: Hermes transposase DNA-binding dom | 94.83 |
| >KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=461.97 Aligned_cols=534 Identities=40% Similarity=0.685 Sum_probs=453.4
Q ss_pred CCcccChHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHhhCCCCcccCcchhhhhhHHHHHHHHHHHHHHHHcCCCeeEE
Q 002915 315 PYISFDQDRCRHEIARMIIMHDYPLHMVEHPGFITFVQNLQPRFDKVSFNTVQGDCVATYLREKQSLMKFIEGIPGRFCL 394 (866)
Q Consensus 315 ~~~~~~~~~~~~~la~~i~~~~~Pfs~ve~~~F~~ll~~l~p~~~~pS~~ti~~~i~~~~~~~~~~l~~~L~~~~~~~sL 394 (866)
....+++..++++++++|+.+++||+.||+++|+.|+..++|.|.+|++.++...+...|...+..++..+....|.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~ii~~~lp~~~ve~~~~~~~~~~~~P~~~~~~~~t~~~~~~~~~~~~k~~~~~~~~~~~~~v~l 169 (641)
T KOG1121|consen 90 TRQKLDQKVIREAIARMIILHGLPLSTVEEPGFRELLKHLNPNYKLPSRSTLEADVLKIYEAEKPKLKEILEKIIGRVSL 169 (641)
T ss_pred ccccchHHHHHHHHHHHHHhcCCChhhccchhHHHHHHhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHccCCceEE
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred eeeccccc-CCceEEEEEEEEEcCCceEEEEEEeecccCCCCcHHHHHHHHHHHHHHccCCCceEEEEeCCCCChhhHHh
Q 002915 395 TLDLWTSN-QTLGYVFITGHFIDSEWKLQRRILNVVMEPYPESDNAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDC 473 (866)
Q Consensus 395 ~~D~Wt~~-~~~~~L~v~vhfid~~~~~~~~~L~~~~l~~~~t~e~I~~~i~~vl~~~gI~~kv~~i~tDnasn~~~~~~ 473 (866)
++|.|++. .+..|+++++||+|.+|+++..+|++. +...|+++.|+..+..++.+|+|.+++..++.|| .+...+..
T Consensus 170 T~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~-~~~~~~~~~i~~~~~~~~~~~~i~~kv~~~~~~n-~~~~~~~~ 247 (641)
T KOG1121|consen 170 TTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFC-IPPPHLGKALASVLNECLLEWGIEKKVFSITVDN-VNVSNIET 247 (641)
T ss_pred EEeeecCCCCCcceEEEEEEEeccchHhhhheeeee-cCCcchHHHHHHHHHHHHHhhChhheEEEEeecc-cchhHHHH
Confidence 99999987 679999999999999999999999999 6667999999999999999999999999999999 44445566
Q ss_pred hHHhhhhcCCcccCCceeeeechhHHHHHHHHHHH-HhhHHHHHHHhhhccccccChHHHHHHHHHHHHhcCCCCCcccc
Q 002915 474 LRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVL-AAGREIVRKIRDSVKYVKTSESHEEKFVELKQQLQVPSEKSLSL 552 (866)
Q Consensus 474 l~~~l~~~~~l~~~~~~~~i~C~aH~LnL~v~~~l-~~i~~~l~k~~~iv~~~~~S~~~~~~l~~~~~~l~~~~~~~L~~ 552 (866)
++..+...+.+.+.+.+.+++|++|.+|+++++++ ..+..++.++++.+++++.+..+...|...+...+.+.. .+..
T Consensus 248 ~~~~l~~~~~~~~~~~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~~f~~~~~~~~~~~~-~~~~ 326 (641)
T KOG1121|consen 248 LRDHLKSSNALLLLGKFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRESSFEECQEQLGIPSD-VLLL 326 (641)
T ss_pred hhHHHhhcccceecceeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccc-cccc
Confidence 66666666677778888999999999999999999 689999999999999999999999999999998877664 3333
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhHHHHHHH
Q 002915 553 DDQTKWNTTYHMLVAASELKEVFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANILTTTTSPTGITFFHEAWKI 632 (866)
Q Consensus 553 ~~~TRW~S~~~mL~~~l~~~~~i~~l~~~~~~~~~~ls~~ew~~l~~l~~iL~pf~~~t~~lq~~~~~tis~vl~~l~~l 632 (866)
+..+||++++.|+.++++++.+|..+...+..+...+++++|..++.++.+|+||.+.+..+++..+++...+++.++.+
T Consensus 327 d~~~~w~st~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~ts~~~~~~i~~i 406 (641)
T KOG1121|consen 327 DVSTRWNSTYLMLSRALKLKDAFSKLEEEDKSYKSYPSDEEWNRLEELCDFLQPFSEVTKLLSGSSYPTSNQYFPEIWKI 406 (641)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 78999999999999999999999999887777777889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHHHHh-hhhhHHHHHHhcCccccchhhhhhhccccC---CChhHHHHHHHHHHH
Q 002915 633 LSDLTRSVTNEDPFVSSISKGMLEKIDKYWR-DCCLVLAIAVVMDPRFKMKLVEFSFTKIYG---DDAPTYIKIVDDGIH 708 (866)
Q Consensus 633 ~~~L~~~~~~~~~~~~~l~~~l~~~f~~~~~-~~~~~~~iA~~LdPr~k~~~~~~~~~~~~~---~~~~~~i~~v~~~l~ 708 (866)
...+.......+..+..++..+.++|++||. ..+.++.+|++||||||..++.+.+.+.++ .........+.+.++
T Consensus 407 ~~~l~~~~~~~~~~~~~~a~~m~~k~dk~~~~~~~~~~~~atvlDPR~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 486 (641)
T KOG1121|consen 407 ENLLKTYASGEDEVVRSMAEEMFEKFDKYWSYSICDLLAIATLLDPRFKLKLLESSFEKLYGKDPEDAKEKVESVRDKLK 486 (641)
T ss_pred HHHHHhcccCccHHHHHHHHHHHHHhhhhcccchhHHHHHHHhcChHhHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH
Confidence 9888877777788899999999999999997 335788999999999999999988888765 345556666788899
Q ss_pred HHHHHHhcC-CCCCCCCcccCCCCCCCCCCCCcCCCc-cCCCCCchhhhhhhh-hhhhhhHHHHHHHHhcC---CCCCCC
Q 002915 709 ELFLEYVSL-PLPLTPTYEEGNAGNNMKSDESQGGTL-LSDNGLTDFDMFIME-TTNQQMKSELDQYLDES---LLPRAH 782 (866)
Q Consensus 709 ~l~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~f~~~~~~-~~~~~~~~El~~Yl~~~---~~~~~~ 782 (866)
.++.+|... +........... ...... ........|...... .......++|+.|+++. ..+...
T Consensus 487 ~l~~~y~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~e~~~~~~~~~~ 557 (641)
T KOG1121|consen 487 KLLEEYKQLSPSNVSNSAHSWD---------LLDESPLEKDAFEYLFEPEVSIDSGSKSGKSELDHYLSESPRLLMPSFL 557 (641)
T ss_pred HHHHHHhccCCCCCCccccccc---------cccccccccchhhhhhhHHHHHHhcCCCCCchHHHHHhhhhhhhccccc
Confidence 999999864 111111000000 000000 011122223222222 22245678999999986 444456
Q ss_pred CCChhhHHhhcCCCcchHHHHHHHHccccCCCcccccccccccccccccccCCCHHHHHHHHHhhcccccCCC-CCcch
Q 002915 783 DFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALICAKDWFQYGSS-EGSNA 860 (866)
Q Consensus 783 ~~dpL~wW~~~~~~fP~La~lA~~~LsiPaSSa~~ER~FS~~~~i~t~~RnrL~~e~le~Ll~lk~~l~~~~~-~~~~~ 860 (866)
..++|+||+.+..+||.|+.+|+++|++|++++..|+.||..++++++.|++|.+.+++.|+|.++|++.+.. +...+
T Consensus 558 ~~~~l~~w~~~~~~y~~ls~~a~d~l~~p~~~~~~e~~f~~~~~~~~~~r~~l~~~~~~~l~c~~~~~~~~~~~~~~~~ 636 (641)
T KOG1121|consen 558 DADVLQWWKGNGTRYPELSSMARDILSIPITSVASESSFSIGGRVLNKYRSRLLPENVQALICTRNWLPGFTELENDIE 636 (641)
T ss_pred cccHHHHhhccCcccchHHHHHHHHHcCcccCccchhhcccCceecCchhccCCchhhHHhhchHhhhhhhcccCcccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999988 44433
|
|
| >PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily) | Back alignment and domain information |
|---|
| >PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function | Back alignment and domain information |
|---|
| >PF14291 DUF4371: Domain of unknown function (DUF4371) | Back alignment and domain information |
|---|
| >PF14372 DUF4413: Domain of unknown function (DUF4413) | Back alignment and domain information |
|---|
| >PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00614 ZnF_BED BED zinc finger | Back alignment and domain information |
|---|
| >PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Length = 534 | Back alignment and structure |
|---|
Score = 231 bits (588), Expect = 1e-66
Identities = 88/556 (15%), Positives = 189/556 (33%), Gaps = 56/556 (10%)
Query: 318 SFDQDRCRHEIARMIIMHDYPLHMVEHPGFITFVQNLQ-----------PRFDKVSFNTV 366
+ + + A+ ++ P V GFI ++ S T+
Sbjct: 13 ADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITL 72
Query: 367 QGDCVATYLREKQSLMKFIEGI--PGRFCLTLDLWTSNQ-TLGYVFITGHFIDSEWKLQR 423
+ +K + + I+ T+DLWT N ++ +T H+ + +L+
Sbjct: 73 SRKVTSDAKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRD 131
Query: 424 RILNVVMEPYPESD-NAFSHAVAACISDWCLEGRVFSLTFGHPLPEAGLDCLRPLLCIKN 482
IL + + S + A S + +E + S+ F N
Sbjct: 132 LILGLKSLDFERSTAENIYKKLKAIFSQFNVE-DLSSIKFVTD-------------RGAN 177
Query: 483 PLILNGQLLVGNCIAHTLSSMAKDVLAAGRE---IVRKIRDSVKYVKTSESHEEKFVELK 539
+ + NC +H LS++ ++ E + ++ VKY K +
Sbjct: 178 VVKSLANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLR---- 233
Query: 540 QQLQVPSEKSLSLDDQTKWNTTYHMLVAASELKEVFSCLDTSDPDYKEAPSMEDWRLVET 599
SL + T+WN+TY ML + + E + S+ + + +++T
Sbjct: 234 --------SSLKSECPTRWNSTYTMLRSILDNWESVIQI-LSEAGETQRIVHINKSIIQT 284
Query: 600 LCAFLKPLFDAANILTTTTSPTGITFFHEAWKILSDLTRSVTNEDPFVSSISKGMLEKID 659
+ L L T +SP+ K+ + + ++ + +++ +
Sbjct: 285 MVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSPD-VGDVADIAKLKVNIIKNVR 343
Query: 660 KYW--RDCCLVLAIAVVMDPRFKMKLVEFSFTKIYGDDAPTYIKIVDDGIHELFLEYVSL 717
W P M+ + + K + +++++ L L
Sbjct: 344 IIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQL 403
Query: 718 PLPLTPTYEEGNAGNNMKSDESQGGTLLSDNGLTDFDMFIMETTNQQMKSELDQYLDESL 777
+ ++ + ++ K + + E + Y E +
Sbjct: 404 NQSDSNSHNSIDLTSHSKDIST------TSFFFPQLTQNNSREPPVCPSDEFEFYRKEIV 457
Query: 778 LPRAHDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRP 837
+ DF ++ WW LN KYP LSK+A +LS+P S + F + R+ +
Sbjct: 458 ILS-EDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQ 516
Query: 838 ETVEALICAKDWFQYG 853
+TV++L+ +++
Sbjct: 517 QTVDSLLFLNSFYKNF 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 Length = 73 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| 2bw3_A | 534 | Transposase; DNA recombination, transposition; 2.0 | 100.0 | |
| 2djr_A | 76 | Zinc finger BED domain-containing protein 2; C2H2 | 99.03 | |
| 2ct5_A | 73 | Zinc finger BED domain containing protein 1; DREF | 98.83 |
| >2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-60 Score=553.76 Aligned_cols=489 Identities=18% Similarity=0.252 Sum_probs=383.1
Q ss_pred cccChHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHhhC---CC--------CcccCcchhhhhhHHHHHHHHHHHHHHH
Q 002915 317 ISFDQDRCRHEIARMIIMHDYPLHMVEHPGFITFVQNLQ---PR--------FDKVSFNTVQGDCVATYLREKQSLMKFI 385 (866)
Q Consensus 317 ~~~~~~~~~~~la~~i~~~~~Pfs~ve~~~F~~ll~~l~---p~--------~~~pS~~ti~~~i~~~~~~~~~~l~~~L 385 (866)
..++++.+.+++++||+.+++||+++|+++|++|++.++ |+ +.+|++.++++.+..+|...+++++++|
T Consensus 12 ~~~~~~~~~~~l~~~i~~~~~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~~~~~~~~~l~~~l 91 (534)
T 2bw3_A 12 SADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGREI 91 (534)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHhhhhhhccccchhhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999885 53 4699999999999999999999999999
Q ss_pred HcC--CCeeEEeeeccccc-CCceEEEEEEEEEcCCceEEEEEEeecccCC-CCcHHHHHHHHHHHHHHccCCC-ceEEE
Q 002915 386 EGI--PGRFCLTLDLWTSN-QTLGYVFITGHFIDSEWKLQRRILNVVMEPY-PESDNAFSHAVAACISDWCLEG-RVFSL 460 (866)
Q Consensus 386 ~~~--~~~~sL~~D~Wt~~-~~~~~L~v~vhfid~~~~~~~~~L~~~~l~~-~~t~e~I~~~i~~vl~~~gI~~-kv~~i 460 (866)
+++ .++|+|++|+||+. ++..||+|++||+ ++|.+++.+|++..+.+ .|||++|++.|.+++++|||.+ +++++
T Consensus 92 ~~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i-~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~ 170 (534)
T 2bw3_A 92 KSAVEKDGASATIDLWTDNYIKRNFLGVTLHYH-ENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKF 170 (534)
T ss_dssp HHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEE-ETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEE
T ss_pred HhhhcCCceEEEEecccCCCCCcceeEEEEEEe-eCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeE
Confidence 986 45999999999998 5899999999999 58999999999999987 6999999999999999999984 56677
Q ss_pred EeCCCCChhhHHhhHHhhhhcCCcccCCceeeeechhHHHHHHHHHHHHh---hHHHHHHHhhhccccccChHHHHHHHH
Q 002915 461 TFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLAA---GREIVRKIRDSVKYVKTSESHEEKFVE 537 (866)
Q Consensus 461 ~tDnasn~~~~~~l~~~l~~~~~l~~~~~~~~i~C~aH~LnL~v~~~l~~---i~~~l~k~~~iv~~~~~S~~~~~~l~~ 537 (866)
++||++|+ ...+. ...+++|++|+|||+++++++. +.+++.+++++++||++|+.+.+
T Consensus 171 vtDnasn~------~~~~~---------~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~~---- 231 (534)
T 2bw3_A 171 VTDRGANV------VKSLA---------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR---- 231 (534)
T ss_dssp EECCCHHH------HHHTT---------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG----
T ss_pred ECCCHHHH------HHHHh---------cCcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhhHh----
Confidence 88999543 22222 2468999999999999999885 78999999999999999987531
Q ss_pred HHHHhcCCCCCcccccCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002915 538 LKQQLQVPSEKSLSLDDQTKWNTTYHMLVAASELKEVFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANILTTT 617 (866)
Q Consensus 538 ~~~~l~~~~~~~L~~~~~TRW~S~~~mL~~~l~~~~~i~~l~~~~~~~~~~ls~~ew~~l~~l~~iL~pf~~~t~~lq~~ 617 (866)
+ + ..|..+++|||+|+|.||+++++++++|..++..... ...++..+|..++.++.+|+||+.++..+++.
T Consensus 232 ----l--~--~~l~~~~~tRW~S~~~~L~~~l~~~~~i~~~~~~~~~-~~~~~~~dw~~~~~l~~iL~pf~~~t~~l~~~ 302 (534)
T 2bw3_A 232 ----L--R--SSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE-TQRIVHINKSIIQTMVNILDGFERIFKELQTC 302 (534)
T ss_dssp ----G--C--CCCCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTC-GGGTTTCCHHHHHHHHHHHHTTHHHHHHHTCS
T ss_pred ----c--c--cccCCCCCCCcHhHHHHHHHHHHHHHHHHHHHHhccc-ccCCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 2 4688999999999999999999999999887754332 23467788999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhh-hhHHHHHHhcCccccc-------hhhhhhhc
Q 002915 618 TSPTGITFFHEAWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRDC-CLVLAIAVVMDPRFKM-------KLVEFSFT 689 (866)
Q Consensus 618 ~~~tis~vl~~l~~l~~~L~~~~~~~~~~~~~l~~~l~~~f~~~~~~~-~~~~~iA~~LdPr~k~-------~~~~~~~~ 689 (866)
++|+++.+|+.+..+...+.. .......+..+...+.++|++||.+. +++|.+|++|||||+. .++++.+.
T Consensus 303 ~~pt~~~v~~~~~~l~~~l~~-~~~~~~~~~~l~~~m~~~l~ky~~~~~~~~~~~A~~LdPr~~~l~p~~k~~~~~~~~~ 381 (534)
T 2bw3_A 303 SSPSLCFVVPSILKVKEICSP-DVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLS 381 (534)
T ss_dssp SSCCGGGHHHHHHHHHHHTCC-CTTSCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHTSGGGTTSCCSCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHhhcchhhheeeEecccccccCHHHHHHHHHHHhh
Confidence 899999999999988876643 23345678888999999999999854 6789999999999853 22222211
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCC-CCCCCCcCCCccCCCCCchhhhhhhhh---hhhhh
Q 002915 690 KIYGDDAPTYIKIVDDGIHELFLEYVSLPLPLTPTYEEGNAGNN-MKSDESQGGTLLSDNGLTDFDMFIMET---TNQQM 765 (866)
Q Consensus 690 ~~~~~~~~~~i~~v~~~l~~l~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~f~~~~~~~---~~~~~ 765 (866)
+. ....+.+++..|.... +.......... ...+.. ............|..+.... .....
T Consensus 382 ~~-----------~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (534)
T 2bw3_A 382 KM-----------EDLELINRMSSFNELS----ATQLNQSDSNSHNSIDLT-SHSKDISTTSFFFPQLTQNNSREPPVCP 445 (534)
T ss_dssp HH-----------HHHHHHHHHHHTTCSC----SSSCCC-----------------CCCHHHHHCHHHHHHHHHSCCCCH
T ss_pred hh-----------cchHHHHHHHHHHHhh----hhhccCCCCccccccccc-ccccCccchHHHHHHHhhcCCCCCCCCh
Confidence 10 0112333444443211 00000000000 000000 00000000001233433321 23457
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHhhcCCCcchHHHHHHHHccccCCCcccccccccccccccccccCCCHHHHHHHHH
Q 002915 766 KSELDQYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALIC 845 (866)
Q Consensus 766 ~~El~~Yl~~~~~~~~~~~dpL~wW~~~~~~fP~La~lA~~~LsiPaSSa~~ER~FS~~~~i~t~~RnrL~~e~le~Ll~ 845 (866)
.+||++|+.++.. .....||+.||+.++..||.|+++|++||++|+||++|||+||.++.+++++|++|+++++++|+|
T Consensus 446 ~~el~~yl~~~~~-~~~~~~~l~wW~~~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~~~~~~~~r~~l~~~~~~~l~~ 524 (534)
T 2bw3_A 446 SDEFEFYRKEIVI-LSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLF 524 (534)
T ss_dssp HHHHHHHHTCCCC-CCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCC-cCCCCChHHHHHhCCccCChHHHHHHHHhcCCcccccccccccccccccCcccccCCHHHHHHHHH
Confidence 8999999998743 345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc
Q 002915 846 AKDWFQY 852 (866)
Q Consensus 846 lk~~l~~ 852 (866)
+++|++.
T Consensus 525 ~~~~~~~ 531 (534)
T 2bw3_A 525 LNSFYKN 531 (534)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
|
| >2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 866 | ||||
| d2bw3a2 | 447 | c.55.3.12 (A:163-609) Transposase Hermes, catalyti | 2e-64 |
| >d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Hermes transposase-like domain: Transposase Hermes, catalytic domain species: House fly (Musca domestica) [TaxId: 7370]
Score = 221 bits (562), Expect = 2e-64
Identities = 78/466 (16%), Positives = 165/466 (35%), Gaps = 43/466 (9%)
Query: 394 LTLDLWTSNQT-LGYVFITGHFIDSEWKLQRRILNVVMEPYPESD-NAFSHAVAACISDW 451
T+DLWT N ++ +T H+ + +L+ IL + + S + A S +
Sbjct: 15 ATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQF 73
Query: 452 CLEGRVFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLAAG 511
+E N + + NC +H LS++ ++
Sbjct: 74 NVEDLSSIKFVTD--------------RGANVVKSLANNIRINCSSHLLSNVLENSFEET 119
Query: 512 REIV---RKIRDSVKYVKTSESHEEKFVELKQQLQVPSEKSLSLDDQTKWNTTYHMLVAA 568
E+ ++ VKY K + SL + T+WN+TY ML +
Sbjct: 120 PELNMPILACKNIVKYFKKANLQHRLR------------SSLKSECPTRWNSTYTMLRSI 167
Query: 569 SELKEVFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANILTTTTSPTGITFFHE 628
+ E + S+ + + +++T+ L L T +SP+
Sbjct: 168 LDNWESVIQI-LSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSLCFVVPS 226
Query: 629 AWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRDCCLVL--AIAVVMDPRFKMKLVEF 686
K+ + + ++ + +++ + W + + P M+ +
Sbjct: 227 ILKVKEICSPD-VGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKV 285
Query: 687 SFTKIYGDDAPTYIKIVDDGIHELFLEYVSLPLPLTPTYEEGNAGNNMKSDESQGGTLLS 746
+ K + +++++ F E + L + + N+ N++ +
Sbjct: 286 AQIKEFCLSKMEDLELINR--MSSFNELSATQLNQSDS----NSHNSIDLTSHSKDISTT 339
Query: 747 DNGLTDFDMFIMETTNQQMKSELDQYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMARD 806
E + Y E ++ + DF ++ WW LN KYP LSK+A
Sbjct: 340 SFFFPQLTQNNSREPPVCPSDEFEFYRKE-IVILSEDFKVMEWWNLNSKKYPKLSKLALS 398
Query: 807 ILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALICAKDWFQY 852
+LS+P S + F + R+ + +TV++L+ +++
Sbjct: 399 LLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKN 444
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| d2bw3a2 | 447 | Transposase Hermes, catalytic domain {House fly (M | 100.0 | |
| d2ct5a1 | 60 | Zinc finger BED domain-containing protein 1 {Human | 98.55 | |
| d2bw3a1 | 84 | Transposase Hermes, dimerisation domain {House fly | 97.36 | |
| d2ct1a2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 82.96 | |
| d1srka_ | 35 | Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc | 81.93 | |
| d2adra1 | 29 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 81.73 | |
| d1x6ha2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 81.38 |
| >d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Hermes transposase-like domain: Transposase Hermes, catalytic domain species: House fly (Musca domestica) [TaxId: 7370]
Probab=100.00 E-value=4.5e-47 Score=431.52 Aligned_cols=430 Identities=18% Similarity=0.245 Sum_probs=313.7
Q ss_pred HHHHHHHcCCCeeEEeeeccccc-CCceEEEEEEEEEcCCceEEEEEEeecccC-CCCcHHHHHHHHHHHHHHccCC-Cc
Q 002915 380 SLMKFIEGIPGRFCLTLDLWTSN-QTLGYVFITGHFIDSEWKLQRRILNVVMEP-YPESDNAFSHAVAACISDWCLE-GR 456 (866)
Q Consensus 380 ~l~~~L~~~~~~~sL~~D~Wt~~-~~~~~L~v~vhfid~~~~~~~~~L~~~~l~-~~~t~e~I~~~i~~vl~~~gI~-~k 456 (866)
+|++.+.. ..+||++|+||+. ++..||+|++||++ +|.+++++|+|..+. +.|||++|++.|.+++++|||+ .+
T Consensus 3 ~~k~~~~~--~~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~ 79 (447)
T d2bw3a2 3 EIKSAVEK--DGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLS 79 (447)
T ss_dssp HHHHHHHT--TCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCT
T ss_pred hHHHHHHc--CCEEEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcce
Confidence 45565555 4799999999986 46799999999998 589999999999986 4699999999999999999998 68
Q ss_pred eEEEEeCCCCChhhHHhhHHhhhhcCCcccCCceeeeechhHHHHHHHHHHHHh---hHHHHHHHhhhccccccChHHHH
Q 002915 457 VFSLTFGHPLPEAGLDCLRPLLCIKNPLILNGQLLVGNCIAHTLSSMAKDVLAA---GREIVRKIRDSVKYVKTSESHEE 533 (866)
Q Consensus 457 v~~i~tDnasn~~~~~~l~~~l~~~~~l~~~~~~~~i~C~aH~LnL~v~~~l~~---i~~~l~k~~~iv~~~~~S~~~~~ 533 (866)
++++++||++|+ ...+. ...+++|++|.|||+++++++. +.+++.++++++.||+.|+.+.+
T Consensus 80 ~~~~~~D~a~n~------~~~~~---------~~~~i~C~aH~Lnl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 144 (447)
T d2bw3a2 80 SIKFVTDRGANV------VKSLA---------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR 144 (447)
T ss_dssp TCEEEECCCHHH------HHHTT---------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred EEEEEcCCcHhh------HHHhh---------ccccccchhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999543 22222 4678999999999999999864 46889999999999999887653
Q ss_pred HHHHHHHHhcCCCCCcccccCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 002915 534 KFVELKQQLQVPSEKSLSLDDQTKWNTTYHMLVAASELKEVFSCLDTSDPDYKEAPSMEDWRLVETLCAFLKPLFDAANI 613 (866)
Q Consensus 534 ~l~~~~~~l~~~~~~~L~~~~~TRW~S~~~mL~~~l~~~~~i~~l~~~~~~~~~~ls~~ew~~l~~l~~iL~pf~~~t~~ 613 (866)
. ...++.+++|||+|++.|++++++++..|..++..... ...++..+|..++.+..+|+||..++..
T Consensus 145 ~------------~~~l~~~~~trW~s~~~~l~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (447)
T d2bw3a2 145 L------------RSSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE-TQRIVHINKSIIQTMVNILDGFERIFKE 211 (447)
T ss_dssp G------------CCCCCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTC-GGGTTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred H------------hcccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhccc-cccCChHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 24688899999999999999999999999887654432 2346778899999999999999999999
Q ss_pred hcccCCCCchhhHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhh-hhhHHHHHHhcCccccchhhhhhhcccc
Q 002915 614 LTTTTSPTGITFFHEAWKILSDLTRSVTNEDPFVSSISKGMLEKIDKYWRD-CCLVLAIAVVMDPRFKMKLVEFSFTKIY 692 (866)
Q Consensus 614 lq~~~~~tis~vl~~l~~l~~~L~~~~~~~~~~~~~l~~~l~~~f~~~~~~-~~~~~~iA~~LdPr~k~~~~~~~~~~~~ 692 (866)
+++...++++.+++.+..+...+.... .....+..+...+..++++||.+ ....+.+|.+|||+++.......
T Consensus 212 l~~~~~~t~~~v~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~p~~~~~~~~~~----- 285 (447)
T d2bw3a2 212 LQTCSSPSLCFVVPSILKVKEICSPDV-GDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKV----- 285 (447)
T ss_dssp HTCSSSCCGGGHHHHHHHHHHHTCCCT-TSCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHTSGGGTTSCCSCH-----
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCcccchhhhHH-----
Confidence 999999999999999988876665432 33445667777788888888874 34667889999999865321100
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCcCCCccCCCCCchhhhh----hhh---hhhhhh
Q 002915 693 GDDAPTYIKIVDDGIHELFLEYVSLPLPLTPTYEEGNAGNNMKSDESQGGTLLSDNGLTDFDMF----IME---TTNQQM 765 (866)
Q Consensus 693 ~~~~~~~i~~v~~~l~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~----~~~---~~~~~~ 765 (866)
.....+.......+................ ......... .... .............+ ... ......
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (447)
T d2bw3a2 286 -AQIKEFCLSKMEDLELINRMSSFNELSATQ--LNQSDSNSH---NSID-LTSHSKDISTTSFFFPQLTQNNSREPPVCP 358 (447)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTCSCSSS--CCC--------------------CCCHHHHHCHHHHHHHHHSCCCCH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccc---cccc-ccchhhhhhcccchhHHhhhhccccccccc
Confidence 001111111111111111111100000000 000000000 0000 00001111111111 111 123345
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHhhcCCCcchHHHHHHHHccccCCCcccccccccccccccccccCCCHHHHHHHHH
Q 002915 766 KSELDQYLDESLLPRAHDFDLLGWWKLNKMKYPTLSKMARDILSVPVCSVGQDSVFDTVSKELDRYRSSLRPETVEALIC 845 (866)
Q Consensus 766 ~~El~~Yl~~~~~~~~~~~dpL~wW~~~~~~fP~La~lA~~~LsiPaSSa~~ER~FS~~~~i~t~~RnrL~~e~le~Ll~ 845 (866)
..|++.|+.++... ..+.||++||+.++..||.|+++|+++|++|+||+.|||+||.++.+++++||+|+++++++|+|
T Consensus 359 ~~el~~yl~~~~~~-~~~~~~l~~W~~~~~~yP~L~~lA~~~Lsip~tsa~~ER~FS~~~~i~t~~R~~L~~e~le~L~~ 437 (447)
T d2bw3a2 359 SDEFEFYRKEIVIL-SEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLF 437 (447)
T ss_dssp HHHHHHHHTCCCCC-CTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHhcCcccc-CCCCCHHHHHHHCCcccHHHHHHHHHHhCCCCcccHHHHHHhccccccCcccCCCCHHHHHHHHH
Confidence 78999999876543 45779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCC
Q 002915 846 AKDWFQYGS 854 (866)
Q Consensus 846 lk~~l~~~~ 854 (866)
|++|+|+.+
T Consensus 438 l~~~~k~~~ 446 (447)
T d2bw3a2 438 LNSFYKNFC 446 (447)
T ss_dssp HHHHHHHHC
T ss_pred HHHHhhccc
Confidence 999999875
|
| >d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]} | Back information, alignment and structure |
|---|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
| >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|