BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002916
(865 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 4
Length = 94
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 1 MHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK 50
+H+KA+ + + QRFCQQCSRFH LQEFDE KRSCRRRLAGHN+RRRK
Sbjct: 35 VHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 12 Lacking The Second
Zinc- Binding Site
Length = 60
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 1 MHSKATKALVGNVMQRFCQQCSRFHVLQEFD 31
+HSKAT ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 30 IHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
Promoter Binding Protein-like 7
Length = 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 15 QRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK 50
+R+CQQC +FH+L +FDEGKRSCRR+L HN RR++
Sbjct: 44 KRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKR 79
>pdb|1YSP|A Chain A, Crystal Structure Of The C-Terminal Domain Of E. Coli
Transcriptional Regulator Kdgr
Length = 181
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 433 ERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPN 492
+ VK +++G RST R + + E V + + G D + + L+C++ P
Sbjct: 74 DEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVP----- 128
Query: 493 VFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESA 530
VF R + + GLS SF +E+ + + ML +A
Sbjct: 129 VFDRFGVVIA--GLSISFPTLRFSEERLQEYVAMLHTA 164
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 630 EMG--LLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFK-------- 679
E+G L+ A N + +LL N A N D G G I K
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 680 PNVIGPAGLTPLHVAACRDDAENVLDALTD--DPGSVGIEAWKSAQDSTGLTPNDYASLR 737
PN G TPLH AA E V L+ DP +A+DS G TP YA+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---------NAKDSDGRTPLHYAAEN 113
Query: 738 AHHSYIHLVQRK-INKKSSES-GRVILDI 764
H + L+ K + +S+S GR LD+
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 57/149 (38%), Gaps = 23/149 (15%)
Query: 630 EMG--LLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFK-------- 679
E+G L+ A N + +LL N A N D G L G + K
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 680 PNVIGPAGLTPLHVAACRDDAENVLDALTD--DPGSVGIEAWKSAQDSTGLTPNDYASLR 737
PN G TPLH+AA E V L+ DP +A+DS G TP A+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---------NAKDSDGKTPLHLAAEN 113
Query: 738 AHHSYIHLV--QRKINKKSSESGRVILDI 764
H + L+ Q S GR LD+
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 135 VEKVPDLVSTGPEPSRPSTSACMTDNRI-GFSEPMRSVGQCGTVPASDLLQKKISTNDAH 193
V+ PDL++T PEP+ P AC ++ F P R +G ++P S I D+
Sbjct: 1 VQLSPDLLATLPEPASPGRQACGRRHKKRTFLRP-RIIGGSSSLPGSHPWLAAIYIGDSF 59
Query: 194 SG-----RVQALSASQSIEMFPSRSSFSA--------KANEPEATFGRSKMSNIDLNNVY 240
+SA+ P R S S + + TFG K L +V+
Sbjct: 60 CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVF 119
Query: 241 DDSQERVEHLEL 252
+ S + + L
Sbjct: 120 NPSDHDLVLIRL 131
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 687 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 746
G TPLH AA ++ + ++ L V +A+DS G TP YA+ H + L+
Sbjct: 70 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 747 QRK---INKKSSESGRVILDI 764
K +N S+ GR LD+
Sbjct: 123 ISKGADVNTSDSD-GRTPLDL 142
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 687 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 746
G TPLH AA ++ + ++ L V +A+DS G TP YA+ H + L+
Sbjct: 37 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 747 QRK---INKKSSESGRVIL 762
K +N K S+ GR L
Sbjct: 90 ISKGADVNAKDSD-GRTPL 107
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 687 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 739
G+TPLH+AA R E +++ L + V +A DS G TP A+ R H
Sbjct: 80 GVTPLHLAARRGHLE-IVEVLLKNGADV------NASDSHGFTPLHLAAKRGH 125
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 634 LHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPA---GLTP 690
LH A+ R C+ VELL+ D V G F+P G G P
Sbjct: 95 LHIAIERRCKHYVELLVAQGAD-------------VHAQARGRFFQPKDEGGYFYFGELP 141
Query: 691 LHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLT 729
L +AAC + ++++ LT++P +A QDS G T
Sbjct: 142 LSLAACTNQP-HIVNYLTENPHK---KADMRRQDSRGNT 176
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 681 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 739
N GLTPLH+AA E +++ L + V +A DS G+TP A+ H
Sbjct: 33 NATDDNGLTPLHLAAANGQLE-IVEVLLKNGADV------NASDSAGITPLHLAAYDGH 84
>pdb|1WX2|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Hydrogenperoxide
pdb|1WX4|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Dithiothreitol
pdb|1WX5|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WX5|C Chain C, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WXC|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein
pdb|2AHK|A Chain A, Crystal Structure Of The Met-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase In Complex
With A Caddie Protein Obtained By Soking In Cupric
Sulfate For 6 Months
pdb|2AHL|A Chain A, Crystal Structure Of The Hydroxylamine-Induced Deoxy-Form
Of The Copper-Bound Streptomyces Castaneoglobisporus
Tyrosinase In Complex With A Caddie Protein
pdb|2ZMX|A Chain A, Crystal Structure Of The Met1-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 36 Hours
pdb|2ZMY|A Chain A, Crystal Structure Of The Met2-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 80 Hours
pdb|2ZMZ|A Chain A, The 1.37-A Crystal Structure Of The Hydroxylamine-Induced
Deoxy-Form Of The Copper-Bound Tyrosinase In Complex
With A Caddie Protein From Streptomyces
Castaneoglobisporus
pdb|2ZWD|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen- Saturated Solution For 5 Minutes
pdb|2ZWE|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 40 Minutes
pdb|2ZWF|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 80 Minutes
pdb|2ZWG|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 12 Hours
pdb|3AWS|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is Low
pdb|3AWT|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is High
pdb|3AWU|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
40 H
pdb|3AWV|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is Low
pdb|3AWW|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is High
pdb|3AWX|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H82q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWY|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie M84l Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWZ|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H97q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AX0|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Y98f Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
Length = 281
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 716 IEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQ 775
+ W Q +TG++PND HH+Y+ + + ++ +S V +VD +
Sbjct: 193 VHVWVGGQMATGVSPND-PVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETM 251
Query: 776 KPLKGNKSSRVL 787
KP + + +L
Sbjct: 252 KPWNTVRPADLL 263
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 681 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 739
N + GLTPLH+AA E +++ L V +A+D+ G+TP A++R H
Sbjct: 41 NALDEDGLTPLHLAAQLGHLE-IVEVLLKYGADV------NAEDNFGITPLHLAAIRGH 92
>pdb|1SBP|A Chain A, 1.7 Angstroms Refined Structure Of Sulfate-Binding Protein
Involved In Active Transport And Novel Mode Of Sulfate
Binding
Length = 310
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 82 MHSNNSDQTKDQDLLSHLFRNL----AGVVGTSNV 112
+H NN+DQ K +D + LF+N+ +G G++N
Sbjct: 145 LHHNNNDQAKAEDFVKALFKNVEVLDSGARGSTNT 179
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 634 LHKAVRRNCRPMVELLL-NYAPDNVLDKPGSRQKQLVDRAGSGFIFK--------PNVIG 684
LH A R + + LL N A N K R G + K PN+
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 685 PAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYAS 735
AG TPLH+AA E VL L EA ++ G TP A+
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEK-------EASQACMTKKGFTPLHVAA 154
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 681 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 739
N + AG+TPLH+AA R E +++ L V +A DS G TP A+ H
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLE-IVEVLLKHGADV------NASDSWGRTPLHLAATVGH 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,768,606
Number of Sequences: 62578
Number of extensions: 909530
Number of successful extensions: 1714
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 28
length of query: 865
length of database: 14,973,337
effective HSP length: 107
effective length of query: 758
effective length of database: 8,277,491
effective search space: 6274338178
effective search space used: 6274338178
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)