Your job contains 1 sequence.
>002920
MEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS
GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHR
LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG
TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF
AFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS
DDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSAL
VKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE
EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR
QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQML
HEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQ
SLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLK
QRNAKIQAQQQQNVESNTMDTYPNKLEKSRKRKPIGDSRSEKDSGHGEDSVVNDGVQEGK
INKKHKANKKQKHNPASDEAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDAR
KSNSSEQAHFRSQKRKLGYQTEGLVGDKSMKRKRPKKNKDTAGREAVDKLDVLIEKYRTK
FSQQGSNKPDGGRQGSKQLRRWFQS
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002920
(865 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 961 5.6e-180 2
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 555 1.8e-56 2
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 435 1.6e-51 2
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 445 4.4e-51 2
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 430 2.3e-50 3
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 428 3.1e-49 2
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 395 1.9e-46 2
UNIPROTKB|G3MZL2 - symbol:RBM28 "Uncharacterized protein"... 435 3.8e-41 2
WB|WBGene00011043 - symbol:rbm-28 species:6239 "Caenorhab... 332 2.9e-40 2
FB|FBgn0260456 - symbol:CG4806 species:7227 "Drosophila m... 333 2.5e-37 3
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 137 2.8e-30 5
DICTYBASE|DDB_G0270156 - symbol:DDB_G0270156 "RNA-binding... 183 9.0e-25 5
CGD|CAL0002736 - symbol:NOP4 species:5476 "Candida albica... 148 2.3e-24 5
UNIPROTKB|Q59KZ0 - symbol:NOP4 "Putative uncharacterized ... 148 2.3e-24 5
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 193 1.3e-22 2
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 141 1.6e-20 6
SGD|S000005964 - symbol:NOP4 "Nucleolar protein" species:... 167 1.7e-20 5
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 174 2.9e-12 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 169 1.1e-11 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 169 1.1e-11 2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 164 4.3e-11 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 164 4.3e-11 2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 163 6.6e-11 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 161 9.6e-11 2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 161 1.5e-10 2
DICTYBASE|DDB_G0286007 - symbol:rbm8A "RNA-binding motif ... 138 4.2e-10 2
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 155 7.2e-10 2
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 152 1.1e-09 2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 151 1.4e-09 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 3.0e-09 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 152 1.2e-08 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 124 1.3e-08 2
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 151 1.8e-08 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 139 2.3e-08 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 152 2.6e-08 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 150 3.2e-08 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 137 3.7e-08 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 119 3.9e-08 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 136 4.7e-08 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 152 5.7e-08 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 152 6.0e-08 2
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 118 7.5e-08 2
FB|FBgn0260400 - symbol:elav "embryonic lethal abnormal v... 124 8.8e-08 3
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 133 9.9e-08 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 133 9.9e-08 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 117 1.0e-07 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 117 1.0e-07 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 117 1.0e-07 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 117 1.0e-07 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 117 1.0e-07 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 1.2e-07 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 117 1.2e-07 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 117 1.3e-07 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 117 1.3e-07 2
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 117 1.4e-07 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 1.5e-07 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 117 1.6e-07 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 117 1.6e-07 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 108 1.7e-07 2
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 101 1.8e-07 3
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 130 2.1e-07 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 2.4e-07 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 149 2.4e-07 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 129 2.7e-07 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 114 2.7e-07 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 114 2.7e-07 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 114 2.9e-07 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 114 2.9e-07 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 2.9e-07 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 3.1e-07 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 114 3.1e-07 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 3.2e-07 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 114 3.2e-07 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 151 3.5e-07 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 140 3.5e-07 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 125 3.5e-07 2
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 155 3.8e-07 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 150 4.2e-07 1
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 127 4.3e-07 1
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 127 4.3e-07 1
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 127 4.3e-07 1
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 127 4.3e-07 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 114 4.8e-07 2
CGD|CAL0002378 - symbol:SBP1 species:5476 "Candida albica... 135 4.8e-07 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 114 5.1e-07 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 149 5.3e-07 2
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 131 5.3e-07 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 114 5.4e-07 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 117 5.5e-07 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 117 5.5e-07 2
TAIR|locus:2080772 - symbol:EIF3G1 "eukaryotic translatio... 145 6.4e-07 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 125 7.1e-07 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 140 8.7e-07 2
WB|WBGene00004387 - symbol:rnp-4 species:6239 "Caenorhabd... 124 9.1e-07 1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 123 9.4e-07 2
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 138 9.4e-07 4
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 137 1.0e-06 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 136 1.1e-06 2
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 150 1.1e-06 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 143 1.1e-06 2
WARNING: Descriptions of 326 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 961 (343.3 bits), Expect = 5.6e-180, Sum P(2) = 5.6e-180
Identities = 228/533 (42%), Positives = 299/533 (56%)
Query: 322 EDLPSNADFDEEVDIARKVLNKXXXXXXXXXXX--XXXXALVKGNKEQDSDKTVNESAKV 379
+D+ ++ +F++E D+ARKVL K + S K V +S+ V
Sbjct: 477 KDVGTDMNFEDEADVARKVLKNLLASSKGSTATPEGETEESDKSKLKSSSTKPVADSSGV 536
Query: 380 SDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVL 439
S+ +T+ D+ + T+FI NLPFD+ EEVKQRF+ FGEV S VL
Sbjct: 537 SEPLKSGKTKVVAPK--ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVL 594
Query: 440 HQVTKRPKGTGFLKFXXXXXXXXXXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEID 499
H+VTKRP+GT F+KF G+G+ LKGRQL V E+
Sbjct: 595 HKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELK 654
Query: 500 KSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTR 559
K++ + DHRNLYLAKEG IL+ TPAAEGVS +DM KR+ LHE KM LQSPNFHVSRTR
Sbjct: 655 KTEEKNVDHRNLYLAKEGQILDDTPAAEGVSAEDMDKRRRLHENKMKMLQSPNFHVSRTR 714
Query: 560 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFV 619
LVIYNLPKSM K L +L +DAV SRA+KQKP I+QIKFLQ+ KKGKVDTK+YSRGVAFV
Sbjct: 715 LVIYNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSRGVAFV 774
Query: 620 EFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTM 679
EFTEH+HALVALRVLNNNP+TFGP+HRP++EFAVDNVQ L + N
Sbjct: 775 EFTEHEHALVALRVLNNNPETFGPQHRPVIEFAVDNVQKLKIREAKQQQFQQRE-KHNES 833
Query: 680 DTYPNKLEKSRKRKPIGDSRSEKDSGHGEDSVVNDGVQEGXXXXXXXXXXXXXXXPASDE 739
D + + P D++ ++ + G+ N G ++ A +
Sbjct: 834 D---QQQANGEAQAP--DNKYKRKTREGD----NTGPRKENAARFKKGPREESKEEA--K 882
Query: 740 AEVSLRDNGEGKTKG------PKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQ 793
+ ++++DN K + P N+K + RQK ET+ K + + SE +
Sbjct: 883 SNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQK---ETTEKPDPKISKDLSEP-----R 934
Query: 794 KRKLGYQTEGLVGDXXXXXXXXXXXXDTAGREAVDKLDVLIEKYRTKFSQQGS 846
KRK G + G + G E VDKLD+LIEKYR+KFSQ +
Sbjct: 935 KRKFG-EDRG-EENRNGQRKRKKQGQGQGGAEVVDKLDLLIEKYRSKFSQSSA 985
Score = 808 (289.5 bits), Expect = 5.6e-180, Sum P(2) = 5.6e-180
Identities = 162/268 (60%), Positives = 198/268 (73%)
Query: 23 VKHAMHRASLEQ--RRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP-- 78
V+ + R +E+ R K + ++ + +EK + K K K +E + KP
Sbjct: 152 VEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIE 211
Query: 79 RKAAT-LGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPK 137
RK T L +DL DKE CS KQRVARTVI GGL NA+MAE VH IGTVCSV YPLPK
Sbjct: 212 RKRPTKLHVDLPDKETCSDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPK 271
Query: 138 EELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKW 197
EEL+Q+GL Q+GC+ +ASAVL+T+VKSACA+VA LHQ E+KG +WARQLGGEGSK QKW
Sbjct: 272 EELQQNGLTQDGCRAEASAVLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKW 331
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KLIIRN+PF+AK ++IK +FS VG VW+V+IP N +TGL KGFAFVKFTCK+DA +AI+K
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 258 FNGQKFGKRPIAVDWAVPKNIYSSGGAA 285
FNG FGKRPIAVDWAVPKNIY+ GAA
Sbjct: 392 FNGHMFGKRPIAVDWAVPKNIYN--GAA 417
Score = 155 (59.6 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVI-- 59
ED NRA+E+KNG++VGGR+I VK A HR SL++RR+K + + D + +KD I
Sbjct: 72 EDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQSDKDTSIPE 131
Query: 60 -----SGAEKHSSKLLESGKTVKP 78
S EK K +E K KP
Sbjct: 132 TDEKVSPPEKKLEKPVERKKVEKP 155
Score = 138 (53.6 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
Identities = 46/133 (34%), Positives = 66/133 (49%)
Query: 739 EAEVSLRDNGEGKTKG------PKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRS 792
++ ++++DN K + P N+K + RQK ET+ K + + SE
Sbjct: 882 KSNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQK---ETTEKPDPKISKDLSEP----- 933
Query: 793 QKRKLGYQTEGLVGDXXXXXXXXXXXXDTAGREAVDKLDVLIEKYRTKFSQQGSNKPDGG 852
+KRK G + G + G E VDKLD+LIEKYR+KFSQ S K
Sbjct: 934 RKRKFG-EDRG-EENRNGQRKRKKQGQGQGGAEVVDKLDLLIEKYRSKFSQS-SAKTGPQ 990
Query: 853 RQGSKQLRRWFQS 865
+Q S Q+RRWF+S
Sbjct: 991 KQSSGQVRRWFES 1003
Score = 109 (43.4 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 185 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 244
R+ G E S + + +P+ ++++ FS VG V ++ N + +GFAFVK
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 245 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
F + D AI+ NG G R I V A
Sbjct: 68 FALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 81 (33.6 bits), Expect = 1.0e-20, Sum P(4) = 1.0e-20
Identities = 56/212 (26%), Positives = 91/212 (42%)
Query: 54 NKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQK--QRVARTVIIGGLLN 111
+K+G +E S L E + V+ G D D ED S K + A +G +N
Sbjct: 427 DKEGSDGDSENSSVDLEEVDEAVESHPPP--GDDTDDDEDGSNKLTESDALDKDVGTDMN 484
Query: 112 ----ADMAEEVHR--LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSA 165
AD+A +V + LA S G+ + P+ E E+ D S + ++ K
Sbjct: 485 FEDEADVARKVLKNLLASSKGSTAT-----PEGETEES---------DKSKLKSSSTKPV 530
Query: 166 CASVALLHQKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 223
S + + +K G V A + + ++ L IRN+PF E+K F+ G V
Sbjct: 531 ADSSGV--SEPLKSGKTKVVAPKETQDNDDFER-TLFIRNLPFDVTKEEVKQRFTVFGEV 587
Query: 224 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255
++ + + T +G AFVKF + +AI
Sbjct: 588 ESLSLVLHKVTKRPEGTAFVKFKTADASVAAI 619
Score = 76 (31.8 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 399 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS-FVPVLHQVTKRPKGTGFLKF 454
EG + + I NLPF ++K FSA G V F+P + T PKG F+KF
Sbjct: 324 EGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE-TGLPKGFAFVKF 379
Score = 65 (27.9 bits), Expect = 1.4e-09, Sum P(4) = 1.4e-09
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 399 EGEDELQN---TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+GE++ + T+ + LP+ + N ++++ FS G V V ++ + +G F+KF
Sbjct: 10 DGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
Score = 62 (26.9 bits), Expect = 5.9e-14, Sum P(4) = 5.9e-14
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 523 TPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYN-LPKSMTEKGLKKLCIDA 581
T AAEG+S D S+ Q K T + + VS + + + EK +++ ++
Sbjct: 107 TKAAEGISVPDNSQGQ---SDKDTSIPETDEKVSPPEKKLEKPVERKKVEKPIERKQVEK 163
Query: 582 VVSRASKQKPV-IKQIK 597
V R +KP+ +KQ++
Sbjct: 164 PVERKKAEKPIELKQVE 180
Score = 53 (23.7 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 44/166 (26%), Positives = 65/166 (39%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISG 61
+DA A++ NG G R I V A+ + T + K+G
Sbjct: 383 KDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGD--------KEGSDGD 434
Query: 62 AEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQK--QRVARTVIIGGLLN----ADMA 115
+E S L E + V+ G D D ED S K + A +G +N AD+A
Sbjct: 435 SENSSVDLEEVDEAVESHPPP--GDDTDDDEDGSNKLTESDALDKDVGTDMNFEDEADVA 492
Query: 116 EEVHR--LAGSIGTVCSVTYPLPKEELEQHGLAQEGCK--MDASAV 157
+V + LA S G+ + T EE ++ L K D+S V
Sbjct: 493 RKVLKNLLASSKGS--TATPEGETEESDKSKLKSSSTKPVADSSGV 536
Score = 52 (23.4 bits), Expect = 1.0e-20, Sum P(4) = 1.0e-20
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 233 DT-GLSKGFAFVKFTCKRDAESAIQKFNG--QKFGK--RPIAVDWAV 274
DT S+G AFV+FT A A++ N + FG RP+ +++AV
Sbjct: 763 DTKNYSRGVAFVEFTEHEHALVALRVLNNNPETFGPQHRPV-IEFAV 808
Score = 51 (23.0 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 614 RGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPI-VEFAV 653
+G AFV+FT + A A++ N + FG RPI V++AV
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGH--MFGK--RPIAVDWAV 408
Score = 44 (20.5 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 18/92 (19%), Positives = 39/92 (42%)
Query: 36 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP--RKAATLGIDLADKED 93
R KV + ++ + +EK ++ K K K E + KP RK ++ E
Sbjct: 149 RKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEK 208
Query: 94 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSI 125
+++R + + L + + + R+A ++
Sbjct: 209 PIERKRPTKLHV--DLPDKETCSDKQRVARTV 238
Score = 43 (20.2 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 28 HRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKA-ATLGI 86
++ S E R + ED+ + ++ K+G G + + K +++ R+ A GI
Sbjct: 54 NKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAAEGI 113
Query: 87 DLAD 90
+ D
Sbjct: 114 SVPD 117
Score = 43 (20.2 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 38 KVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP--RKAATLGIDLADKEDCS 95
K+ + V+ + +EK ++ K K + K +E + KP RK ++ E
Sbjct: 142 KLEKPVERKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPV 201
Query: 96 QKQRVARTV 104
++++V + +
Sbjct: 202 ERKQVEKPI 210
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 555 (200.4 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 154/480 (32%), Positives = 223/480 (46%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+K +LIIRN+ FK +++K +F+ G V V IP D G +GF FV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKA 170
Query: 255 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGV-QNKXXXXXXXXXXXXXXXXXXXXXX 313
++ N ++ R +AVDWAV K+ Y + + + + K
Sbjct: 171 LKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEE 230
Query: 314 XXXXXXXKEDLPSNADFDEEVDIARKVLNKXXXXXXXXXXXXXXXALVKGNKEQDSDKTV 373
+D + FD+E + + +K A K + + D +
Sbjct: 231 EENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDL 290
Query: 374 NESAKVSD----VXXXXXXXXXXXXXXQTEGEDELQ--------NTIFICNLPFDLDNEE 421
ES + D Q + + + T+FI NL FD + EE
Sbjct: 291 EESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEE 350
Query: 422 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXXXXXXGLG-IFLKGR 480
+ + FGE+ VLH T+ KG F +F G + L GR
Sbjct: 351 LGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGR 410
Query: 481 QLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQML 540
QL V + K K T RNLYLA+EGLI GT AAEGVS DM+KR+
Sbjct: 411 QLKVDLAVTRDEAAKLQTTKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERF 469
Query: 541 HEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV-IKQIKFL 599
K KL+ N VSRTRL ++NLPK++ +K L+KL + A S +K V IK+ + +
Sbjct: 470 ELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSAT----SGEKGVRIKECRVM 525
Query: 600 QSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTL 659
+ LK + K S G AF EF EH+HAL ALR++NNNP+ FGP RPIVEF++++ + L
Sbjct: 526 RDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKL 585
Score = 44 (20.5 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 735 PASDEAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQK 794
P+ ++ LRD G+ K PK+ P KP + + ++ SSEQ S+K
Sbjct: 674 PSHRGPKIRLRDKGKVKPVHPKK-----P---KPQIN---QWKQEKQQLSSEQV---SRK 719
Query: 795 RKLGYQTE 802
+ G +TE
Sbjct: 720 KAKGNKTE 727
Score = 42 (19.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 25/131 (19%), Positives = 47/131 (35%)
Query: 741 EVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQA--HFRSQKRKLG 798
E SL D + K K + R + R KP KG + ++A H ++ K+
Sbjct: 576 EFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVP 635
Query: 799 YQTEGLVGDXXXXXXXXXXXXDTAGR-EAVDKLDVL-IEKYR---TKFSQQGSNKPDGGR 853
+ + G + + + VL + +R + +G KP +
Sbjct: 636 PEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPK 695
Query: 854 QGSKQLRRWFQ 864
+ Q+ +W Q
Sbjct: 696 KPKPQINQWKQ 706
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 435 (158.2 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 131/400 (32%), Positives = 187/400 (46%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 466
T+FI NL FD + E++ + FG++ VLH T+ KG F +F
Sbjct: 333 TVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 392
Query: 467 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V K K T RNLYLA+EGLI GT A
Sbjct: 393 ASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGT-RNLYLAREGLIRAGTKA 451
Query: 526 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 585
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL +++ +R
Sbjct: 452 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNS--TR 509
Query: 586 ASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 645
K IK+ + ++ LK K S G AF EF EH+HAL ALR +NNNP+ FGP+
Sbjct: 510 GEKAVR-IKECRVMRDLKGAYGKIKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQK 568
Query: 646 RPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLE----KSRKRKPIGDSRSE 701
RPIVEF++++ + L V+S P ++ K +++K + E
Sbjct: 569 RPIVEFSLEDRRKLKVKELRIQRSQQK-VKSKPGTGEPQQVPPEPGKKQQQKAAQNHMQE 627
Query: 702 KDSGH----GE-DSVVNDGVQ-----EGXXXXXXXXXXXXXXXPASDEAEVSLRDNGEGK 751
+ G DSV G Q E P+ ++ LRD G+ K
Sbjct: 628 QSQASVRQKGTADSVSWAGFQTKAEVEHVELPDGKKRRKVLALPSHRGPKIRLRDKGKMK 687
Query: 752 TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFR 791
PK+ K + + QK + + + RK + R
Sbjct: 688 PLPPKKP-KPQTNHQKQEKQKLSSKQVPRKKAKGNKTEVR 726
Score = 171 (65.3 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 58/199 (29%), Positives = 95/199 (47%)
Query: 103 TVIIGGLLNADMAEEVHRLAGSIGTV--CSVTYPLPKEELEQHGLAQEGCKMDASAVL-- 158
T+ +G L + +E++ L +G V C V + G D L
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 159 YTTVKSACASVALLHQK-----EIKGGTVWA----RQLGGEGSKT--QKWKLIIRNIPFK 207
TT + +V + +K + KG T + ++L + +K +K +LIIRN+ FK
Sbjct: 65 ITTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSFK 124
Query: 208 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 267
+++K +FS G + V IP D G +GFAFV+F +A A++ N ++ R
Sbjct: 125 CSEDDLKTVFSQFGTILEVNIPRKPD-GKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 268 IAVDWAVPKNIYSSGGAAA 286
+AVDWAV K+ Y S +A+
Sbjct: 184 VAVDWAVAKDKYKSTQSAS 202
Score = 42 (19.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 736 ASDEAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
+ D++++ RD+ +G + + ++++ D+E S K RK S R
Sbjct: 279 SDDDSDLEERDSIDGGEDLAQSDTSSE-EQEEEDIEVSKKKRKKRKLPSDVNEGKTVFIR 337
Query: 796 KLGYQTE 802
L + +E
Sbjct: 338 NLSFDSE 344
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 445 (161.7 bits), Expect = 4.4e-51, Sum P(2) = 4.4e-51
Identities = 136/402 (33%), Positives = 194/402 (48%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 466
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLAA 385
Query: 467 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 386 ASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 444
Query: 526 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 585
AEGVS DM+KR+ K KL++ N VS+TRL ++NLPKS+ +K L+KL + A
Sbjct: 445 AEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKSVDDKQLRKLLLQAT--- 501
Query: 586 ASKQKPV-IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 644
+K V IK+ + ++ LK K S G AFVEF +H+HAL ALR NNNP+TFGP+
Sbjct: 502 -GGEKGVRIKECRVMRDLKAVHGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQ 560
Query: 645 HRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKS----RKRKPI-GDSR 699
RPIVEF++++ + L + S + + P K +K +++K G +R
Sbjct: 561 KRPIVEFSLEDRRKLKVKELRIQRSLQK-MGSKPVTSKPQKEQKEQGKDKQQKAAQGGTR 619
Query: 700 SE-KDSGH-GEDSVVN-DGVQ-----EGXXXXXXXXXXXXXXXPASDEAEVSLRDNGEGK 751
+ K G G+ + G Q E P+ +V LRD G+ K
Sbjct: 620 DQSKAPGEQGKGRCTSWTGFQTKAEVEQVELPDGTRRRKVLALPSHRGPKVRLRDRGKVK 679
Query: 752 TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSE---QAHF 790
+ P + K + ++K + S A K + E +AHF
Sbjct: 680 SL-PSKKPKPQMGQRKQKKQQSASSLQAPKKKAKESKAEAHF 720
Score = 155 (59.6 bits), Expect = 4.4e-51, Sum P(2) = 4.4e-51
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAF++F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD-GKMRGFAFIQFKNLLEAGKA 170
Query: 255 IQKFNGQKFGKRPIAVDWAVPKNIY 279
++ N ++ R +AVDWAV K+ Y
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKY 195
Score = 77 (32.2 bits), Expect = 6.9e-43, Sum P(2) = 6.9e-43
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 257
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 258 --FNGQK 262
F G K
Sbjct: 66 TTFEGCK 72
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 430 (156.4 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 107/256 (41%), Positives = 143/256 (55%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 466
T+FI NL FD + EE+ + FG++ VLH T+ KG F +F
Sbjct: 328 TVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 387
Query: 467 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 388 ASPETEGGGLKLDGRQLRVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 446
Query: 526 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 585
AEGVS DM+KR+ K KL+ N VS+TRL ++NLPK + +K L+KL ++A +R
Sbjct: 447 AEGVSAADMAKRERFELLKHQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNA--TR 504
Query: 586 ASKQKPVIKQIKFLQSLK--KGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGP 643
K +K+ + ++ LK GKV K S G AF EF EH+HAL ALR +NNNP+ FGP
Sbjct: 505 GEKGVR-LKECRVMRDLKGVHGKV--KGQSLGYAFAEFQEHEHALTALRHINNNPEIFGP 561
Query: 644 EHRPIVEFAVDNVQTL 659
RPIVEF++++ + L
Sbjct: 562 LKRPIVEFSLEDRRKL 577
Score = 163 (62.4 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+K +LIIRN+ FK +++K +F G V V IP D G +GFAFV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPD-GKMRGFAFVQFKNLLEAGKA 170
Query: 255 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 291
++ N ++ R +AVDWAV K+ Y + +A+ K
Sbjct: 171 LKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGEK 207
Score = 74 (31.1 bits), Expect = 4.5e-41, Sum P(3) = 4.5e-41
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 257
L + +P A+ +++++FS VG + ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 258 --FNGQK 262
F G K
Sbjct: 66 TTFEGCK 72
Score = 45 (20.9 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 91 KEDCSQKQRVA---RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 147
KE +K +VA +II L +++ + G G V V P K + + G A
Sbjct: 100 KEPKPKKPKVADKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPR-KPDGKMRGFA- 157
Query: 148 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV---WA 184
V + + A ++ ++ KEIKG TV WA
Sbjct: 158 --------FVQFKNLLEAGKALKSMNMKEIKGRTVAVDWA 189
Score = 41 (19.5 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 753 KGPKRNRKDR-------PDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLGY 799
+GPK ++D+ P + KP + + + SN + + + K ++ +
Sbjct: 669 RGPKIRQRDKGRVKSLPPKKPKPQINSQKQEKQKLPSNQAPRKKAKGNKTEIRF 722
Score = 41 (19.5 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 11 KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLL 70
++ ++ G ++ KH S E R + E + E+ + T + +DG E +K
Sbjct: 199 QSASAPGEKRPEPKH--QELSKENGREEEDMEEEEEEEDDTEEEEDGE-EDKESRVTKPA 255
Query: 71 ESGKTVKPRKAATLGI--DLADKEDCSQKQR 99
+ K R A D +D ED K+R
Sbjct: 256 QIQKRAVRRAAPAESSEEDHSD-EDSGLKER 285
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 751 KTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
K G + + + ++ D E G + ++S ++ A QKR
Sbjct: 218 KENGREEEDMEEEEEEEDDTEEEEDGEEDKESRVTKPAQI--QKR 260
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 428 (155.7 bits), Expect = 3.1e-49, Sum P(2) = 3.1e-49
Identities = 127/395 (32%), Positives = 186/395 (47%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXX-XXX 465
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 385
Query: 466 XXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 386 ASLEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 444
Query: 526 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 585
AEGVS DM+KR+ K KL++ N VS+TRL ++NLPK++ +K L+KL ++A +R
Sbjct: 445 AEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEA--TR 502
Query: 586 ASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 645
K IK+ + ++ LK K S G AF EF +H+HAL ALR NNNP+ FG +
Sbjct: 503 GEKGVR-IKECRVMRDLKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQK 561
Query: 646 RPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKS----RKRKPIGDSRSE 701
RPIVEF++++ + L +ES + + P K +K +++K + + +
Sbjct: 562 RPIVEFSLEDRRKLKVKELRIQRSLQK-MESKPVTSKPQKEQKEVGKDKQQKVVQSATQD 620
Query: 702 KDSGHGED-----SVVNDGVQ-----EGXXXXXXXXXXXXXXXPASDEAEVSLRDNGEGK 751
+ GE S G Q E P+ ++ LRD G+ K
Sbjct: 621 QSKAPGEQKGKAGSTSWSGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVK 680
Query: 752 TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSE 786
+ P R K + ++K + A K + E
Sbjct: 681 SL-PSRKPKPQMGQRKQKKQQLASSVQAPKRKAKE 714
Score = 157 (60.3 bits), Expect = 3.1e-49, Sum P(2) = 3.1e-49
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAFV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKA 170
Query: 255 IQKFNGQKFGKRPIAVDWAVPKNIYSSG--GAAAGVQ 289
++ N ++ R +AVDWAV K+ Y +A GV+
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVK 207
Score = 77 (32.2 bits), Expect = 7.8e-41, Sum P(2) = 7.8e-41
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 257
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 258 --FNGQK 262
F G K
Sbjct: 66 TTFEGCK 72
Score = 45 (20.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 499 DKSKNETNDHRNLYLAKEGLIL-EGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSR 557
++S E + + + L + G EGT +E ++D + + EKK KL S V+
Sbjct: 267 EESIEEDDSYEDSDLEEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSD---VTE 323
Query: 558 TRLV-IYNLPKSMTEKGL 574
+ V I NL E+ L
Sbjct: 324 GKTVFIRNLSFDSEEEAL 341
Score = 40 (19.1 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 22 GVKHAMHRASLE--QRRSKVTQEVQAEDIEKTMDNKD 56
GVK + R E ++ +V ++V+ D E+ D+ D
Sbjct: 205 GVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHD 241
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 395 (144.1 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 98/255 (38%), Positives = 137/255 (53%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPV-LHQVTKRPKGTGFLKFXXXXXXXXXXX 465
TIFI NL FD + E +++ FGE+ S+V V ++ T KG F +F
Sbjct: 440 TIFIRNLSFDSEEEGLEEVLLQFGEL-SYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIA 498
Query: 466 XXXXXXGL-GIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTP 524
GI L GR+L + + K K T RNLYLA+EGLI GT
Sbjct: 499 AALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHTGS-RNLYLAREGLIRAGTK 557
Query: 525 AAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVS 584
AAEG+S+ D++KR E K +L+ N +VS+TRL ++NLPKS+ + L LC+ A
Sbjct: 558 AAEGISEADIAKRTRFEELKRARLKDINVYVSKTRLCVHNLPKSVDKNKLFNLCVSAAGG 617
Query: 585 RASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 644
+ + I + + + K K S G FVEF EH+HA+ ALR LNNNP FGP+
Sbjct: 618 KGVR----IIECRIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGPQ 673
Query: 645 HRPIVEFAVDNVQTL 659
RPIVEF++++ + L
Sbjct: 674 KRPIVEFSLEDGRKL 688
Score = 171 (65.3 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 39/94 (41%), Positives = 55/94 (58%)
Query: 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255
K +LIIRN+ FK + +++K +FS G V IP D G +GFAFV F +A A+
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPD-GKKRGFAFVLFKRMPEAGKAL 293
Query: 256 QKFNGQKFGKRPIAVDWAVPKNIY--SSGGAAAG 287
NG+K R +AVDWA+ K+ Y + +AAG
Sbjct: 294 TAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAG 327
Score = 161 (61.7 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 36/80 (45%), Positives = 45/80 (56%)
Query: 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 252
K W LIIRN+ FK + +E+K +FS G V IP D G KGFAFV+F C +AE
Sbjct: 121 KENGW-LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPD-GKKKGFAFVQFKCVSEAE 178
Query: 253 SAIQKFNGQKFGKRPIAVDW 272
A N + RP+ VDW
Sbjct: 179 KARAAMNRKAIRDRPVEVDW 198
Score = 74 (31.1 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
L +R +P A + ++FS +G + N ++ + + +GF +V F+ + DA+ A+++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKC-RGFGYVTFSMEDDAQRALKE 63
Score = 67 (28.6 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
+L++ + I NL F + +++KQ FS FG V+ +P+ KR G F+ F
Sbjct: 233 KLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKR--GFAFVLF 283
Score = 52 (23.4 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 1 MEDANRAVEMKNGTSVGGRKIGVKHAMHRAS-LEQRRSKVTQEVQAEDIEKTMDNKDGVI 59
M +A +A+ NG + R++ V A+ + L + + ++ E++ ++ D
Sbjct: 286 MPEAGKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENK 345
Query: 60 SGAEKHSSKLLESGK 74
+K SK +S +
Sbjct: 346 DAKKKSISKKSDSSE 360
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 33/147 (22%), Positives = 60/147 (40%)
Query: 572 KGLKKLCIDA--VVSRAS-K-QKPVIKQIKFLQ--SLKKGKVDTKH--YSRGVAFVEFTE 623
KG++K+ + + ++ S K ++ +KQI F + ++ + K+ K RG AFV F
Sbjct: 227 KGIRKIKLKSRLIIRNLSFKCEEDDLKQI-FSEFGTVLEAKIPLKPDGKKRGFAFVLFKR 285
Query: 624 HQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLXXXXXXXXXXXXXX-VESNTMDTY 682
A AL +N K + + V++A+ + L V +
Sbjct: 286 MPEAGKALTAMNGK-KI--KDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEAD 342
Query: 683 PNKLEKSRKRKPIGDSRSEKDSGHGED 709
NK K + DS ++D +D
Sbjct: 343 ENKDAKKKSISKKSDSSEDEDDDDDDD 369
Score = 45 (20.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/98 (21%), Positives = 38/98 (38%)
Query: 758 NRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLGYQTEGLVGDXXXXXXXXXX 817
NRK DR +V+ +T ++ +E+ H K + TE G
Sbjct: 185 NRKAIRDRPV-EVDWTTSNTESADPEDTEEPH----KAEETTSTEKFKGIRKIKLKSRLI 239
Query: 818 XXDTAGREAVDKLDVLIEKYRTKFSQQGSNKPDGGRQG 855
+ + + D L + ++ T + KPDG ++G
Sbjct: 240 IRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRG 277
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 523 TPAAEGVSDDDMSKRQMLHEKKMT-KLQSPNFHVSRTRLVIYNLPKSMTEKGLKKL 577
T E +D + E T K + ++RL+I NL E LK++
Sbjct: 200 TSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQI 255
>UNIPROTKB|G3MZL2 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 EMBL:DAAA02011496
RefSeq:NP_001178319.1 UniGene:Bt.32577 Ensembl:ENSBTAT00000065989
GeneID:507132 KEGG:bta:507132 NextBio:20867915 Uniprot:G3MZL2
Length = 610
Score = 435 (158.2 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 131/400 (32%), Positives = 187/400 (46%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 466
T+FI NL FD + E++ + FG++ VLH T+ KG F +F
Sbjct: 187 TVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 246
Query: 467 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V K K T RNLYLA+EGLI GT A
Sbjct: 247 ASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGT-RNLYLAREGLIRAGTKA 305
Query: 526 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 585
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL +++ +R
Sbjct: 306 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNS--TR 363
Query: 586 ASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 645
K IK+ + ++ LK K S G AF EF EH+HAL ALR +NNNP+ FGP+
Sbjct: 364 GEKAVR-IKECRVMRDLKGAYGKIKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQK 422
Query: 646 RPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLE----KSRKRKPIGDSRSE 701
RPIVEF++++ + L V+S P ++ K +++K + E
Sbjct: 423 RPIVEFSLEDRRKLKVKELRIQRSQQK-VKSKPGTGEPQQVPPEPGKKQQQKAAQNHMQE 481
Query: 702 KDSGH----GE-DSVVNDGVQ-----EGXXXXXXXXXXXXXXXPASDEAEVSLRDNGEGK 751
+ G DSV G Q E P+ ++ LRD G+ K
Sbjct: 482 QSQASVRQKGTADSVSWAGFQTKAEVEHVELPDGKKRRKVLALPSHRGPKIRLRDKGKMK 541
Query: 752 TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFR 791
PK+ K + + QK + + + RK + R
Sbjct: 542 PLPPKKP-KPQTNHQKQEKQKLSSKQVPRKKAKGNKTEVR 580
Score = 55 (24.4 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 266 RPIAVDWAVPKNIYSSGGAAA 286
R +AVDWAV K+ Y S +A+
Sbjct: 41 RTVAVDWAVAKDKYKSTQSAS 61
Score = 47 (21.6 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + +P A+ +++++FS VG V ++ ++ +A K K ++I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKSTQSASIP-- 63
Query: 259 NGQKFGKRP 267
G++ KRP
Sbjct: 64 -GEE--KRP 69
Score = 44 (20.5 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEV 432
T+F+ LP +E++++ FS G V
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPV 30
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 332 (121.9 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 82/252 (32%), Positives = 124/252 (49%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXX 467
+F+ NL +D E +K+ S FG++ + ++ + KGT F+ F
Sbjct: 265 VFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGV 324
Query: 468 XXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAE 527
G+ + R + E +K D RNL LA+ GLI +GT AA
Sbjct: 325 ED----GVIIDNRLVKANLAIPRKEAADMEKEKLTKVPKDKRNLRLARFGLIRDGTAAAA 380
Query: 528 GVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRAS 587
G+S DD +KR+ + E KL++ N +S RL I+NLP+ + + LK+L + +
Sbjct: 381 GMSKDDAAKRERIAEAMRKKLENTNMFISPVRLCIHNLPQKINDVKLKELA-----QKFT 435
Query: 588 KQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRP 647
+I + + K+ D K S G FV F EH HAL L+ LNNN +TF +HRP
Sbjct: 436 SPGALITECRVWMDKKRLTPDGKPKSSGFGFVAFKEHMHALECLKKLNNNAETFHKDHRP 495
Query: 648 IVEFAVDNVQTL 659
IVEF+V+N+ L
Sbjct: 496 IVEFSVENLLAL 507
Score = 172 (65.6 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCK 248
E +K ++W+LIIRN+PFK K +++++ S +G + +P + D GF F++F K
Sbjct: 88 EQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEK 147
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 281
DAE + FN K R +A DWA+ K+ Y +
Sbjct: 148 ADAEKGREFFNTNKVLGRSVAADWALDKDTYET 180
Score = 45 (20.9 bits), Expect = 5.9e-27, Sum P(2) = 5.9e-27
Identities = 34/159 (21%), Positives = 67/159 (42%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLE----QRRSKVTQEVQAEDIEKTMDNKDGV 58
DA + E N V GR + A+ + + E + + + + V+ E EK +
Sbjct: 149 DAEKGREFFNTNKVLGRSVAADWALDKDTYETNAHEEKQHLKKVVKVEKDEKPEEKSKKF 208
Query: 59 ISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEV 118
+ S+ E G + +A+ D D E+ ++K + + L D E +
Sbjct: 209 DEEEGEEESEGSEDGS--EAFEASEASEDDEDDEEPAKKPKNPKAQ-----LKTD--ESI 259
Query: 119 HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAV 157
G + + +++Y KEEL + L++ G K+D + +
Sbjct: 260 TE--GKVVFLRNLSYDT-KEELIKEELSKFG-KIDLAII 294
Score = 37 (18.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 77 KPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLP 136
+ R AT G A ++ Q + +II L E++ L +IG + P
Sbjct: 70 RARPEATEGEKSAIRKRFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPS 129
Query: 137 KEE 139
+++
Sbjct: 130 RKD 132
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 333 (122.3 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 93/289 (32%), Positives = 145/289 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-VTKRPKGTGFLKFXXXXXXXXXXX 465
T+FI N+PFD ++ ++++ FG +VS+ + Q V+ KGT F+KF
Sbjct: 231 TVFIKNVPFDAEDADLRKACRKFG-LVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQ 289
Query: 466 XXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSK-NETNDHRNLYLAKEGLILEGTP 524
G L L + ++K ++ D RNLYLA+EGLI+ G
Sbjct: 290 A-----GTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAK 344
Query: 525 AAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVS 584
AA+GVS DM+KR L + K L++ N VSR RL I+NLP++ + LK++ +
Sbjct: 345 AADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALTYTGF 404
Query: 585 RASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 644
R + + V+++ K +GK S+G F+ F HQ AL ALR LNNNP FG +
Sbjct: 405 RPHECR-VMREHKVTPEHPQGK------SKGFGFLSFDTHQRALAALRKLNNNPNIFGTQ 457
Query: 645 HRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKSRKRK 693
RPIV F++++ ++N TY NK ++ ++R+
Sbjct: 458 SRPIVAFSIED----RAVHKIKEKRTERSKQNNP--TYQNKQQERKERR 500
Score = 120 (47.3 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E + ++ +LI+RNI +K+ + +++ F G + +V+I D G G AFV++
Sbjct: 41 ERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGD-GKLVGCAFVQYETIN 99
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 281
A AI NG++ R + VDWA+ K+ Y S
Sbjct: 100 QATKAILNSNGKELLGRKVFVDWALGKDEYVS 131
Score = 91 (37.1 bits), Expect = 6.1e-05, Sum P(4) = 6.1e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ I+N+PF A+ +++ GLV I +G SKG AFVKF K A+ +Q
Sbjct: 232 VFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQ 289
Score = 73 (30.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/105 (23%), Positives = 39/105 (37%)
Query: 750 GKTKGPKRNRKDR-PDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLGYQTEGLVG-D 807
GK + +N KD PD +KP VE + D ++ A + G ++ G D
Sbjct: 125 GKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGED 184
Query: 808 XXXXXXXXXXXXDTAGREAVDKLDVLIEKYRTKFSQQGSNKPDGG 852
D +E D+L ++ K +Q SN G
Sbjct: 185 EEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEG 229
Score = 66 (28.3 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 28/120 (23%), Positives = 43/120 (35%)
Query: 751 KTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSS----EQA--HFRSQKRKLGYQTEGL 804
K +G +K D Q V T+ K + K S EQA H + K + Q
Sbjct: 536 KAEGKVAEKKQLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKK 595
Query: 805 VGDXXXXXXXXXXXXDTAGREAVDKLDVLIEKYRTKFS-QQGSNKPDGGRQGSKQLRRWF 863
+ + ++ D L LI KY+ S QG GG+ + +W+
Sbjct: 596 IRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGKIKKPKRTKWY 655
Score = 63 (27.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 405 QNTIFICNLPFDLDNEEVKQR---FSAFGEVVSFVPVLHQVT-KRP----KGTGFLKF 454
+N + I NLP + DNE++KQ ++ F V H+VT + P KG GFL F
Sbjct: 377 RNRLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSF 434
Score = 43 (20.2 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 1 MEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ-EVQAEDIEKTMDNKD 56
+ A +A+ NG + GRK+ V A+ + + K + + + +E +N D
Sbjct: 98 INQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGD 154
Score = 39 (18.8 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 771 ETSTKGNDARKSNSSEQAHFRSQKRKLGYQTE 802
E S + N ++ E+ R QKR G +T+
Sbjct: 480 ERSKQNNPTYQNKQQERKERRQQKRN-GQETK 510
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 137 (53.3 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 185 RQLGGEGSKTQKWKLIIRNIPFKAKVNE-IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243
+Q + + TQ KLI+RN+P+ K E + F G V V +P + L+ GF FV
Sbjct: 138 KQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKK-GSQLA-GFGFV 195
Query: 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 281
K++AE A++ NG++ R +AVDWAV K ++ +
Sbjct: 196 VLRGKKNAEKALEAVNGKEVDGRTLAVDWAVEKEVWEN 233
Score = 128 (50.1 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 498 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 556
+ K D R LYL EG I + + +S ++ R+ +++ ++ +P+ H S
Sbjct: 432 VSKRLVRDTDKRRLYLLNEGTISPNSTLYKSLSPSEIKMREDSFKQRQNFIRKNPSLHFS 491
Query: 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQ 595
TRL I N+P+ +T K LK+L +A+V A K I+Q
Sbjct: 492 LTRLSIRNIPRHVTSKDLKQLAREAIVGFAKDVKEGIRQ 530
Score = 120 (47.3 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 360 LVKGNKEQD-SDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQ-NTIFICNLPFDL 417
L G ++D S+ E +VSD + E EDE +TIFI NLPF
Sbjct: 261 LDNGELDEDMSEDDDEEDDEVSDEEDEDEDEEEEEEEEEEEKEDERNASTIFIRNLPFTC 320
Query: 418 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D+E + F+ FG + V+ T+RP+GTGF+ F
Sbjct: 321 DDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCF 357
Score = 117 (46.2 bits), Expect = 8.5e-26, Sum P(4) = 8.5e-26
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
+G+ + +L IR++P A + + FS ++ + + + T SKG+ FV F
Sbjct: 30 DGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVE 89
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPKN 277
DA++A+++ NG F + I V++A P++
Sbjct: 90 DAKAALEELNGSTFEGKKIKVEYAQPRH 117
Score = 106 (42.4 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 43/149 (28%), Positives = 61/149 (40%)
Query: 585 RASKQKPVIKQIKFLQSLKKG-KVDTKH---YSRGVAFVEFTEHQHALVALRVLNNN--- 637
R K V++Q K + + G KV SRG F+E+ H+HAL+ LR LN +
Sbjct: 551 RKKKGVGVVRQAKIVFEGRDGSKVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNGHAIS 610
Query: 638 -PKTFGPE-----HRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLE-KSR 690
PK E R IVEFA++N Q + + + P K + K
Sbjct: 611 PPKNVSEELKDKKKRLIVEFAIENAQVVKRRLEQQERVRNRKKDQKDDEGSPRKRDTKKN 670
Query: 691 KRKPIGDSRSEKDSGHGED-SVVNDGVQE 718
+K + R G S NDG Q+
Sbjct: 671 DKKNEKNGRDSDSKGKKRKRSESNDGGQD 699
Score = 82 (33.9 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 374 NESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 433
N K ++ Q +G + + +FI +LP NE + + FS +
Sbjct: 5 NSPEKPTEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIK 64
Query: 434 SFVPVLHQVTKRPKGTGFLKF 454
V V+ TK+ KG GF+ F
Sbjct: 65 HAVVVVDPKTKQSKGYGFVTF 85
Score = 63 (27.2 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 1 MEDANRAVEMKNGTSVGGRKIGVKHAM--HRASLEQRRSKVTQEVQAEDIEKTMDNK 55
+EDA A+E NG++ G+KI V++A HR +++ K +A + +K + +
Sbjct: 88 VEDAKAALEELNGSTFEGKKIKVEYAQPRHRV-VDETVGKSVPSAEALERKKQREQQ 143
Score = 61 (26.5 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ IRN+PF + D F+ G + I + +T +G FV F A++ +Q
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACVQ 368
Score = 59 (25.8 bits), Expect = 1.6e-25, Sum P(5) = 1.6e-25
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 757 RNRK-DRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLGYQTEG 803
RNRK D+ D + + TK ND + + + + +KRK +G
Sbjct: 649 RNRKKDQKDDEGSPRKRDTKKNDKKNEKNGRDSDSKGKKRKRSESNDG 696
Score = 59 (25.8 bits), Expect = 6.7e-20, Sum P(4) = 6.7e-20
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQ-RRSKVTQEVQAEDIEKTMDNKDG 57
++A +A+E NG V GR + V A+ + E ++ + E ++ +D +DG
Sbjct: 201 KNAEKALEAVNGKEVDGRTLAVDWAVEKEVWENLQKEEEHAEPDVKEESSDVDMEDG 257
Score = 46 (21.3 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 746 DNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKL 797
D G + + K+N K +K ++ +KG ++S S++ ++ K+
Sbjct: 658 DEGSPRKRDTKKNDKKN---EKNGRDSDSKGKKRKRSESNDGGQDTEEQNKI 706
Score = 41 (19.5 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 28/112 (25%), Positives = 44/112 (39%)
Query: 687 EKSRKRKPIGDSRSEKDSGHGED-SVVNDGVQEGXXXXXXXXXXXXXXXPASDEAEVSLR 745
EK RK+K +G R K G D S V++ G A + LR
Sbjct: 548 EKLRKKKGVGVVRQAKIVFEGRDGSKVSEDSGAGRSRGYGFIEYYTHR-----HALMGLR 602
Query: 746 D-NGEGKTKGPKRNRKDRPDRQKP-DVETSTKGNDARKSNSSEQAHFRSQKR 795
NG + PK ++ D++K VE + + K +Q R++K+
Sbjct: 603 WLNGHAISP-PKNVSEELKDKKKRLIVEFAIENAQVVKRRLEQQERVRNRKK 653
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 738 DEAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQ 787
+ ++V + D G G G D ++ D + + D + E+
Sbjct: 248 ESSDVDMEDGGVGLDNGELDEDMSEDDDEEDDEVSDEEDEDEDEEEEEEE 297
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(5) = 2.5e-15
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 566 PKSMTE--KGLKK-LCIDAVVSRASKQKPVIKQIKFLQSLKKGKVD 608
PK+++E K KK L ++ + A K ++Q + +++ KK + D
Sbjct: 612 PKNVSEELKDKKKRLIVEFAIENAQVVKRRLEQQERVRNRKKDQKD 657
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 183 (69.5 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 56/194 (28%), Positives = 92/194 (47%)
Query: 474 GIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDD 533
G+ L GR L V + + K E D +N +L G I++ + + + + D
Sbjct: 503 GVMLDGRCLVVCYAVDHQQATAYK--EKKVENVDKKNKHLLNIGKIIQNSAEGKELDEKD 560
Query: 534 MSKRQMLHEKKMTKLQ-SPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV 592
+ R ++ TKL+ +PN++VS TRL I NLP +T+ LK + + + K K V
Sbjct: 561 WALRNQADKENQTKLKVNPNYYVSPTRLCIRNLPLHVTDTILKNATMKILKTANIKDKVV 620
Query: 593 IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTF-GPEH------ 645
++ ++ K S+G AF+E + HQ AL L NNN K F P +
Sbjct: 621 FAKVAC--DNERVNAQGKAKSKGFAFIECSTHQGALEILHKTNNNSKIFFSPSNLKSKGQ 678
Query: 646 RPIVEFAVDNVQTL 659
R +FAV++ + +
Sbjct: 679 RLFTQFAVEDARAV 692
Score = 135 (52.6 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+LIIRN+ F + + + FS G + V +P T +GFAF+ F + +E +++
Sbjct: 212 ELIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTFKERESSEKVLKE 271
Query: 258 FNGQKFGKRPIAVDWAVPKNIY 279
N +K R I +DW++ +N Y
Sbjct: 272 CNNEKIHTRQIVIDWSLKQNDY 293
Score = 100 (40.3 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
DEL+ T+FI NL FD E++ +F +G++V VL ++T++P G F+K+
Sbjct: 400 DELK-TLFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKY 451
Score = 68 (29.0 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 402 DELQ-NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D L+ N + I NL F+ + + + ++FS++G+++ T P+G FL F
Sbjct: 206 DNLKANELIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTF 259
Score = 55 (24.4 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
L IRN+ F K ++ F G + + + T G AFVK+ + DA A++
Sbjct: 405 LFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKYHEQDDARRAVE 462
Score = 54 (24.1 bits), Expect = 2.5e-16, Sum P(4) = 2.5e-16
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 212 EIKDMFSPVGLVWNVYI-PHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268
++++ FS +G + +I + G + G A+V + AE AI++ N ++ + I
Sbjct: 19 DLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIAYVWYALAEHAEKAIKEKNNKQLKSKII 78
Query: 269 AVDWAVPK 276
V A K
Sbjct: 79 HVSIAKEK 86
Score = 42 (19.8 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
E A +A++ KN + + I V A + L ++ SK ++D + + D+KD
Sbjct: 59 EHAEKAIKEKNNKQLKSKIIHVSIAKEK--LSKKDSK-----DSKDSKDSKDSKD 106
Score = 41 (19.5 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 741 EVSLRDNGEG--KTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLG 798
E L +NG+ K R ++ R +++ + ++G D N EQ +K+KL
Sbjct: 723 EQPLDENGKPIPVEKKLSRGQRQREKKREQRAKLESQGVDVDALN--EQKQLVVEKKKLQ 780
Query: 799 YQTEGL 804
Q + +
Sbjct: 781 QQLKDM 786
Score = 40 (19.1 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 189 GEGSKTQ-----KWKLIIRNIPFKAKVNEIKDMF 217
GEG K + K K+ I + K +V+E+K +F
Sbjct: 373 GEGDKKESKLDVKKKMAIDHTRNKKEVDELKTLF 406
Score = 39 (18.8 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPK 447
+F+ L D NE+++ FS G + V Q K K
Sbjct: 6 VFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEKGEK 45
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 148 (57.2 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 40/115 (34%), Positives = 63/115 (54%)
Query: 498 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 556
+ K+ E D RNL+L EG I E + A+ +S D+ R+ ++ + +L+ +P H+S
Sbjct: 421 LGKAPGE-KDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLS 479
Query: 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKH 611
TRL I NLP++M K LK L AVV A++ K +Q + + + V KH
Sbjct: 480 LTRLAIRNLPRAMNAKALKALGRKAVVQFATEVKEGKRQPLSKEEVNRS-VKFKH 533
Score = 139 (54.0 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 190 EGSKTQKWKLIIRNIPFKAKV-NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
E + ++ +LIIRN+P+ K +E+K +FS G V++ YIP G GFAFV
Sbjct: 128 EPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKG-GQMCGFAFVIMKKN 186
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
AE A++ G K R +AVD+AV K+
Sbjct: 187 SAAEKAVEGCQGLKIDGREVAVDFAVEKS 215
Score = 110 (43.8 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 40/134 (29%), Positives = 59/134 (44%)
Query: 584 SRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN----PK 639
S+ SK K V+KQ K + +K G +T SRG F+EF +H+ AL+ LR LN + P+
Sbjct: 547 SKNSKHKGVVKQAKVIMEVK-GSGETGR-SRGYGFIEFRDHKAALMGLRWLNAHEVSIPE 604
Query: 640 TF-G--PEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKSRKRKPIG 696
G E + + E N + L M + S+KRK
Sbjct: 605 ILEGLTDEEKKLAELEGLNKRRLIVEFAIENAQVVKRRREKEMIARNQNKDNSKKRKR-- 662
Query: 697 DSRSEKDSGHGEDS 710
D E+D+G E +
Sbjct: 663 DDNEEEDNGDAEST 676
Score = 107 (42.7 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+IF+ N+P+D D E +K+ FS FG V +PV+ + T KG+ F+ F
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAF 357
Score = 99 (39.9 bits), Expect = 2.8e-16, Sum P(4) = 2.8e-16
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
+ ++ + + + +RNIP+ A +K+ FS G V + +TGL+KG AFV F K
Sbjct: 302 KSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAFA-KE 360
Query: 250 DA 251
DA
Sbjct: 361 DA 362
Score = 96 (38.9 bits), Expect = 3.2e-20, Sum P(4) = 3.2e-20
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L +R+IPF+A E+ + FS V + I + + S+GF FV FT D +A+ +
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERK-SRGFGFVSFTLDDDCLTALVES 93
Query: 259 NGQKFGKRPIAVDWA 273
KF R + VD A
Sbjct: 94 RKTKFKDRLLRVDVA 108
Score = 76 (31.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q +G D + T+F+ ++PF+ +EE+ + FS F V V V ++ +G GF+ F
Sbjct: 26 QDDGLD--RKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN-ERKSRGFGFVSF 80
Score = 65 (27.9 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 4 ANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
A +AVE G + GR++ V A+ ++ EQ + + +E ED E + + ++
Sbjct: 189 AEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEE--EEDNESSEEEEE 239
Score = 64 (27.6 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 739 EAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLG 798
E E+ R+ + +K KR R D + D E+++KG +K SS++ + +K + G
Sbjct: 644 EKEMIARNQNKDNSK--KRKRDDNEEEDNGDAESTSKG---KKFGSSDK---KQKKARKG 695
Query: 799 YQTEG 803
Q +G
Sbjct: 696 SQKKG 700
Score = 42 (19.8 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 416 DLDNEEVKQRFSAFGEVVSFVPVLHQV-----TKRPKGTGFLKF 454
D + E K + S VV V+ +V T R +G GF++F
Sbjct: 539 DAEEEIAKSKNSKHKGVVKQAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 30 ASLEQRRSKVTQEVQAEDIEKTMDNK 55
A +E R++K + D+ K D K
Sbjct: 89 ALVESRKTKFKDRLLRVDVAKRRDRK 114
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 148 (57.2 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 40/115 (34%), Positives = 63/115 (54%)
Query: 498 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 556
+ K+ E D RNL+L EG I E + A+ +S D+ R+ ++ + +L+ +P H+S
Sbjct: 421 LGKAPGE-KDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLS 479
Query: 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKH 611
TRL I NLP++M K LK L AVV A++ K +Q + + + V KH
Sbjct: 480 LTRLAIRNLPRAMNAKALKALGRKAVVQFATEVKEGKRQPLSKEEVNRS-VKFKH 533
Score = 139 (54.0 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 190 EGSKTQKWKLIIRNIPFKAKV-NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
E + ++ +LIIRN+P+ K +E+K +FS G V++ YIP G GFAFV
Sbjct: 128 EPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKG-GQMCGFAFVIMKKN 186
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
AE A++ G K R +AVD+AV K+
Sbjct: 187 SAAEKAVEGCQGLKIDGREVAVDFAVEKS 215
Score = 110 (43.8 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 40/134 (29%), Positives = 59/134 (44%)
Query: 584 SRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN----PK 639
S+ SK K V+KQ K + +K G +T SRG F+EF +H+ AL+ LR LN + P+
Sbjct: 547 SKNSKHKGVVKQAKVIMEVK-GSGETGR-SRGYGFIEFRDHKAALMGLRWLNAHEVSIPE 604
Query: 640 TF-G--PEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKSRKRKPIG 696
G E + + E N + L M + S+KRK
Sbjct: 605 ILEGLTDEEKKLAELEGLNKRRLIVEFAIENAQVVKRRREKEMIARNQNKDNSKKRKR-- 662
Query: 697 DSRSEKDSGHGEDS 710
D E+D+G E +
Sbjct: 663 DDNEEEDNGDAEST 676
Score = 107 (42.7 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+IF+ N+P+D D E +K+ FS FG V +PV+ + T KG+ F+ F
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAF 357
Score = 99 (39.9 bits), Expect = 2.8e-16, Sum P(4) = 2.8e-16
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
+ ++ + + + +RNIP+ A +K+ FS G V + +TGL+KG AFV F K
Sbjct: 302 KSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAFA-KE 360
Query: 250 DA 251
DA
Sbjct: 361 DA 362
Score = 96 (38.9 bits), Expect = 3.2e-20, Sum P(4) = 3.2e-20
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L +R+IPF+A E+ + FS V + I + + S+GF FV FT D +A+ +
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERK-SRGFGFVSFTLDDDCLTALVES 93
Query: 259 NGQKFGKRPIAVDWA 273
KF R + VD A
Sbjct: 94 RKTKFKDRLLRVDVA 108
Score = 76 (31.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q +G D + T+F+ ++PF+ +EE+ + FS F V V V ++ +G GF+ F
Sbjct: 26 QDDGLD--RKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN-ERKSRGFGFVSF 80
Score = 65 (27.9 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 4 ANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
A +AVE G + GR++ V A+ ++ EQ + + +E ED E + + ++
Sbjct: 189 AEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEE--EEDNESSEEEEE 239
Score = 64 (27.6 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 739 EAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLG 798
E E+ R+ + +K KR R D + D E+++KG +K SS++ + +K + G
Sbjct: 644 EKEMIARNQNKDNSK--KRKRDDNEEEDNGDAESTSKG---KKFGSSDK---KQKKARKG 695
Query: 799 YQTEG 803
Q +G
Sbjct: 696 SQKKG 700
Score = 42 (19.8 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 416 DLDNEEVKQRFSAFGEVVSFVPVLHQV-----TKRPKGTGFLKF 454
D + E K + S VV V+ +V T R +G GF++F
Sbjct: 539 DAEEEIAKSKNSKHKGVVKQAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 30 ASLEQRRSKVTQEVQAEDIEKTMDNK 55
A +E R++K + D+ K D K
Sbjct: 89 ALVESRKTKFKDRLLRVDVAKRRDRK 114
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 193 (73.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 51/133 (38%), Positives = 64/133 (48%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 466
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 330 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLAA 389
Query: 467 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 525
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 390 ASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 448
Query: 526 AEGVSDDDMSKRQ 538
AEGVS DM+KR+
Sbjct: 449 AEGVSAADMAKRE 461
Score = 177 (67.4 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 76/295 (25%), Positives = 127/295 (43%)
Query: 514 AKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKG 573
A + + +P EG + RQ+ + +T+ ++ + + + +G
Sbjct: 382 AAQKCLAAASPETEG-GGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGTRNLYLAREG 440
Query: 574 LKKLCIDAV--VSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVAL 631
L + A VS A K ++ + ++ LK K S G AFVEF +H+HAL AL
Sbjct: 441 LIRAGTKAAEGVSAADMAKR--ERCRVMRDLKAVHGKMKGQSLGYAFVEFQKHEHALRAL 498
Query: 632 RVLNNNPKTFGPEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKS-- 689
R NNNP+TFGP+ RPIVEF++++ + L + S + + P K +K
Sbjct: 499 RHFNNNPETFGPQKRPIVEFSLEDRRKLKVKELRIQRSLQK-MGSKPVTSKPQKEQKEQG 557
Query: 690 --RKRKPI-GDSRSE-KDSGH-GEDSVVN-DGVQ-----EGXXXXXXXXXXXXXXXPASD 738
+++K G +R + K G G+ + G Q E P+
Sbjct: 558 KDKQQKAAQGGTRDQSKAPGEQGKGRCTSWTGFQTKAEVEQVELPDGTRRRKVLALPSHR 617
Query: 739 EAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSE---QAHF 790
+V LRD G+ K+ P + K + ++K + S A K + E +AHF
Sbjct: 618 GPKVRLRDRGKVKSL-PSKKPKPQMGQRKQKKQQSASSLQAPKKKAKESKAEAHF 671
Score = 155 (59.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAF++F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD-GKMRGFAFIQFKNLLEAGKA 170
Query: 255 IQKFNGQKFGKRPIAVDWAVPKNIY 279
++ N ++ R +AVDWAV K+ Y
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKY 195
Score = 77 (32.2 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 257
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 258 --FNGQK 262
F G K
Sbjct: 66 TTFEGCK 72
Score = 71 (30.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
T+ + IRN+ F ++ + ++ G + V I + DT SKG AF +F + A+
Sbjct: 326 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQK 385
Query: 254 AIQKFN------GQKFGKRPIAVDWAVPKN 277
+ + G K R + VD AV ++
Sbjct: 386 CLAAASPETEGGGLKLDGRQLKVDLAVTRD 415
Score = 58 (25.5 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T+F+ LP ++++++ FS G V V + +K +G G++ F
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 52
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 541 HEKKMTK-LQSPNFHVSRTRLVIYNLPKSMTEKG---LKKLCIDAVVSRASKQKPVIKQI 596
H + T+ L+ + VS+ + LP +TE ++ L D+ + +
Sbjct: 298 HSESSTEELEDEDVPVSKKKK--RKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDL 355
Query: 597 KFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFG 642
K+++ + DT+H S+G AF +F + A L + P+T G
Sbjct: 356 KYVRIVLHP--DTEH-SKGCAFAQFVTQEAAQKCLAAAS--PETEG 396
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 141 (54.7 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 198 KLIIRNIPFKAKVNE-IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+LIIRN+P+ K + ++ FS G V + IP G GFAFV ++ AE A+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 257 KFNGQKFGKRPIAVDWAVPKNIYSS 281
NG + RPIAVDWAV K+ + +
Sbjct: 167 SLNGTEIDGRPIAVDWAVSKDAFEA 191
Score = 131 (51.2 bits), Expect = 3.9e-18, Sum P(5) = 3.9e-18
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L +RN+ F+ K +++ + FS VG + + + N +TG ++G+ FV F+ DA+ A ++
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 259 NGQKFGKRPIAVDWAVPK 276
+K R + +D+A P+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 90 (36.7 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 507 DHRNLYLAKEGLILEGTPAAEGVSDDDMSKR-QMLHEKKMTKLQSPNFHVSRTRLVIYNL 565
D R+L+L EG I P +S+ D + R Q + ++K ++P H+S RL I N+
Sbjct: 410 DRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNI 469
Query: 566 PKSMTEKGLKKLCIDAV 582
+ + K L L A+
Sbjct: 470 SRHIDPKILAMLGRQAI 486
Score = 89 (36.4 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 361 VKGNKE--QDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDE-LQNTIFICNLPFDL 417
V G+ E + + ++ E + V DV ++E L++T+F+ NL F+
Sbjct: 229 VDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFEC 288
Query: 418 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+E+ F FG + V T R G GF+KF
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 75 (31.5 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 602 LKKGKVDTKHY----SRGVAFVEFTEHQHALVALRVLNNNPKT 640
LK+ KV+T+ S+G F++F H++AL+ALR LN T
Sbjct: 523 LKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREIT 565
Score = 66 (28.3 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+T+F+ NL F +++ FS G + V V + T +G GF+ F
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 59 (25.8 bits), Expect = 3.3e-07, Sum P(5) = 3.3e-07
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ +RN+ F+ E+ + F G + + + T S G F+KF ++D ++ ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 53 (23.7 bits), Expect = 4.8e-10, Sum P(5) = 4.8e-10
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 4 ANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDG 57
A A+ NGT + GR I V A+ + + E K + +E+ K + +G
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLK---DASSEEENKEFVSDEG 211
Score = 49 (22.3 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 1 MEDANRAV-EMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTM--DNKDG 57
+EDA RA E+KN + GR + + A R +RS+V + Q + ++KT+ DN+
Sbjct: 56 LEDAQRAAKELKN-KKLHGRILRLDFATPR-----KRSEVDTD-QNKAVKKTIRQDNRPR 108
Query: 58 VI 59
+I
Sbjct: 109 LI 110
Score = 47 (21.6 bits), Expect = 1.6e-20, Sum P(6) = 1.6e-20
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 646 RPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKSRKRKPIGDSRSEK 702
R IVEFA++N+Q + + + N L++ R + D+ +++
Sbjct: 598 RLIVEFAIENIQVVKRRQEKEKSFRQKAKQLKQQEDEDN-LKRKRSESDVEDNEAKE 653
Score = 43 (20.2 bits), Expect = 6.5e-16, Sum P(6) = 6.5e-16
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 527 EGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLK 575
EG+ D +S R +LH + + K+ S V+R N KS+ E+ K
Sbjct: 361 EGIDTDSVSSRFLLHGR-LLKVTSA---VTRKEASDIN-QKSLQERKQK 404
Score = 38 (18.4 bits), Expect = 6.6e-08, Sum P(4) = 6.6e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 556 SRTRLVIYNLPKSM 569
+R RL+I NLP S+
Sbjct: 105 NRPRLIIRNLPWSI 118
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 167 (63.8 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 498 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 556
+ K+ E D RNLYL EG ++EG+ A+ +++ DM R+ ++ ++ +L+ +P+ H+S
Sbjct: 402 LGKAPGE-KDRRNLYLLNEGRVVEGSKMADLLTNTDMEIREKSYKLRVEQLKKNPSLHLS 460
Query: 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK 590
TRL I NLP++M +K LK L AVV A++ K
Sbjct: 461 MTRLAIRNLPRAMNDKALKALARKAVVEFATEVK 494
Score = 112 (44.5 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 34/91 (37%), Positives = 46/91 (50%)
Query: 189 GEGSKTQ-KWKLIIRNIPFKAKVN-EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 246
GE S + K KLIIRN+P+ + ++K +F G V IP D L GFAFV
Sbjct: 138 GEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLC-GFAFVTMK 196
Query: 247 CKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ A++ K R +AVD+AV KN
Sbjct: 197 KISNCRIALENTKDLKIDGRKVAVDFAVQKN 227
Score = 95 (38.5 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 363 GNK--EQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNE 420
GN+ E++ D +E+ + Q + ED ++F+ N+P+D E
Sbjct: 248 GNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKAQNKREDF---SVFVRNVPYDATEE 304
Query: 421 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ FS FG V +PV+ + T KGT F+ F
Sbjct: 305 SLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
Score = 94 (38.1 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 510 NLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSM 569
+L+L+ L + P A ++D + + L K + + + + R L + +S
Sbjct: 456 SLHLSMTRLAIRNLPRA--MNDKAL---KALARKAVVEFATEVKNKERHPLSKEEIIRST 510
Query: 570 TEKGLKKLCIDAVVSRASKQKP--VIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 627
EK K + D + ++ K K V+KQ K + +K G T SRG FVEF +H++A
Sbjct: 511 KEK-YKFMGPDEIEAQKKKDKKSGVVKQAKVIMEVK-GS--TAGRSRGYGFVEFRDHKNA 566
Query: 628 LVALRVLN 635
L+ LR LN
Sbjct: 567 LMGLRWLN 574
Score = 86 (35.3 bits), Expect = 6.8e-18, Sum P(5) = 6.8e-18
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L +R+IP ++ D FS + + + +T+ S+GF FV F + D + A+ K
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKR-SRGFGFVSFAVEDDTKEALAKA 86
Query: 259 NGQKFGKRPIAVDWA 273
KF + VD A
Sbjct: 87 RKTKFNGHILRVDIA 101
Score = 85 (35.0 bits), Expect = 5.0e-12, Sum P(4) = 5.0e-12
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251
+K + + + +RN+P+ A + FS G V + TGL+KG AFV F +
Sbjct: 285 NKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTY 344
Query: 252 ESAIQKFNGQKFGKRPIAV-DWAVPKNIY 279
I+ N G + + D +P+ +Y
Sbjct: 345 NECIK--NAPAAGSTSLLIGDDVMPEYVY 371
Score = 78 (32.5 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 399 EGEDELQ-NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ +D L T+F+ ++P D+ +E++ FS F + V V+ KR +G GF+ F
Sbjct: 18 QNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAV-VVKDTNKRSRGFGFVSF 73
Score = 60 (26.2 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 45/171 (26%), Positives = 69/171 (40%)
Query: 7 AVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHS 66
A+E + GRK+ V A+ + E + K E+ +D DN+ G E H
Sbjct: 204 ALENTKDLKIDGRKVAVDFAVQKNRWEDYK-KAQPEMNDKD-----DNESGNEDAEENHD 257
Query: 67 SKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIG 126
+ E + R+ + K +Q +R +V + + D EE LA
Sbjct: 258 DE--EDENEEEDRQVDQASKNKESKRK-AQNKREDFSVFVRNV-PYDATEE--SLAPHFS 311
Query: 127 TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYT---TVKSACA--SVALL 172
SV Y LP + + GLA+ G A YT +K+A A S +LL
Sbjct: 312 KFGSVKYALPVID-KSTGLAK-GTAFVAFKDQYTYNECIKNAPAAGSTSLL 360
Score = 39 (18.8 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 746 DNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARK 781
D GE + K PK+ P PD G+D ++
Sbjct: 641 DVGESENKKPKKEEATTPTN--PD--DKKMGDDIKR 672
Score = 39 (18.8 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 26/118 (22%), Positives = 47/118 (39%)
Query: 588 KQKPVIKQIKFL---QSLKKGKVDTKHYSRGVAFVEFTEHQHALVA---LRVLNNNPKT- 640
KQ VI ++K +S G V+ + + + + + + HA+ + L LN++ K
Sbjct: 536 KQAKVIMEVKGSTAGRSRGYGFVEFRDHKNALMGLRWL-NCHAVTSDEILEGLNDDEKKQ 594
Query: 641 ----FGPEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPNKLEKSRKRKP 694
G R VEFA++N + + DT + +S +KP
Sbjct: 595 VDNDLGKGRRLCVEFAIENSNVVKRRREQLKQARTKRTRPDNEDT--GDVGESENKKP 650
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 174 (66.3 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M EE+ L SIG + S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFSP G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 114 (45.2 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 250
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 251 AESAIQKFNGQKFGKRPIAVDWAVPKN 277
A AI NG + G + + V + K+
Sbjct: 298 ASMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 62 (26.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
Score = 46 (21.3 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
+DA RA+ NG + + I V +A R S E + + + +TM KD
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA---NLYISGLPRTMTQKD 121
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 169 (64.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 62 (26.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 169 (64.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 62 (26.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 164 (62.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 62 (26.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 164 (62.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 62 (26.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 163 (62.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 19 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 71
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 72 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 127
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 128 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 187
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 188 TVKFAANPN 196
Score = 62 (26.9 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 298
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 161 (61.7 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 62 (26.9 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 150
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 38 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 90
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 91 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 146
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 268
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 147 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 206
Query: 269 AVDWAVPKN 277
V +A N
Sbjct: 207 TVKFAANPN 215
Score = 62 (26.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 317
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 138 (53.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 29/105 (27%), Positives = 59/105 (56%)
Query: 189 GEGSKT-QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 247
GE K+ + W + +RNI + + ++ D+F+ G + N+++ + TG +KG+A +++
Sbjct: 62 GEPLKSIEGWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEK 121
Query: 248 KRDAESAIQKFNGQKFGKRPIAVDWA-VPKNIYSSGGAAAGVQNK 291
+ +AE AI+ +G + ++VDWA + N S G + N+
Sbjct: 122 RSEAEDAIKNGSGYELAGLKLSVDWAFITGNASLSSGVVSFKSNR 166
Score = 41 (19.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 773 STKGNDARKSNSSEQAHFRSQK 794
S K N K+NS+ ++RS K
Sbjct: 161 SFKSNRKDKNNSNNSNNYRSNK 182
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 155 (59.6 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 54/194 (27%), Positives = 84/194 (43%)
Query: 90 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKE---ELEQHGL 145
D D + + RT +I L +M + E+ L SIG V S K E+ L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSL 66
Query: 146 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIP 205
++ G + V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 67 SK-GHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 206 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--F 263
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 264 GKRPIAVDWAVPKN 277
PI V +A N
Sbjct: 186 SSEPITVKFAANPN 199
Score = 116 (45.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251
S T W + + N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 250 SATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 309
Query: 252 ESAIQKFNGQKFGKRPIAVDWAVPKN 277
AI NG + G + + V + K+
Sbjct: 310 AMAIASLNGYRLGDKTLQVSFKTSKS 335
Score = 61 (26.5 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 301
Score = 45 (20.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
+DA RA+ NG + + I V A R S E + + + +TM KD
Sbjct: 83 KDAERAINTLNGLRLQSKTIKVSFA--RPSSESIKDA---NLYISGLPRTMTQKD 132
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 152 (58.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 53/191 (27%), Positives = 83/191 (43%)
Query: 90 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 148
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 149 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKA 208
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTM 117
Query: 209 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKR 266
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 118 TQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 267 PIAVDWAVPKN 277
PI V +A N
Sbjct: 178 PITVKFAANPN 188
Score = 62 (26.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 151 (58.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 56/192 (29%), Positives = 86/192 (44%)
Query: 90 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 148
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 149 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQK-WKLIIRNIPFK 207
V Y K A ++ L+ ++ T+ S+T K L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKV-SFARPSSETIKDANLYISGLPRT 116
Query: 208 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGK 265
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 117 MTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSS 176
Query: 266 RPIAVDWAVPKN 277
PI V +A N
Sbjct: 177 EPITVKFAANPN 188
Score = 62 (26.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 117 (46.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 82 (33.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 152 (58.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 53 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 112
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 274
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 113 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 172
Query: 275 -PKNIYSS 281
PK+ Y S
Sbjct: 173 APKSTYES 180
Score = 48 (22.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L D VVS++S
Sbjct: 174 PKSTYESNTKQLSYDEVVSQSS 195
Score = 40 (19.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVV 433
T++ + L + ++Q FS FG+++
Sbjct: 200 TVYCGGVTSGLTEQLMRQTFSPFGQIM 226
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 124 (48.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 250
GS+ K LI+ +P E+K +F +G + + + + TG S G+ FV + +D
Sbjct: 62 GSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKD 121
Query: 251 AESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
AE AI NG + + I V +A P N+Y SG
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 114 (45.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 FGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 85 (35.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS FG +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRF 202
Score = 64 (27.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 151 (58.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L+IRN+P A+ N+++D F G + ++Y+P N TG +GF FVK+ DA A+++
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 259 NGQKFGKRPIAVDWA 273
N + G R IA+ +A
Sbjct: 109 NHKVIGGREIAIVFA 123
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 756 KRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
+ NRK + + + + G+ R S+ S + +RS R
Sbjct: 124 EENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSR 163
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 139 (54.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+Q + + + N+P++ EI + F+ VG V NV I ++ +TG +GFAFV+F+ + A+
Sbjct: 3 SQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQR 62
Query: 254 AIQKFNGQKFGKRPIAVDWA 273
A+++ NG F R + V++A
Sbjct: 63 AVEQLNGVAFNGRNLRVNYA 82
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 152 (58.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 274
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 275 -PKNIYSS 281
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 45 (20.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L D VV+++S
Sbjct: 178 PKSTYESNTKQLSYDEVVNQSS 199
Score = 40 (19.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVV 433
T++ + L + ++Q FS FG+++
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIM 230
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 150 (57.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 48/178 (26%), Positives = 85/178 (47%)
Query: 102 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 161
RT+ +G L + + + L IG+V T + + + + AS L T
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTK-TKVIFDGSNDPYAFVEFSDHGQASQALQTM 104
Query: 162 VKSACASVALLHQKEIKGGTVWARQLGGEGSK---TQKWKLIIRNIPFKAKVNEIKDMFS 218
K LL +E+K WA + G + SK T+ + + + ++ + ++++ F
Sbjct: 105 NKR------LLLDREMKVN--WAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G V + + +T+T SKG+ FV + + +AE AI++ NGQ G+R I +WA K
Sbjct: 157 PFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
Score = 54 (24.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
QT G++ ++++ N+ L +E++Q F++FG + ++ K +G F+KF
Sbjct: 235 QTSGDN---TSVYVGNIA-SLTEDEIRQGFASFGRITEV-----RIFKM-QGYAFVKF 282
Score = 39 (18.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 614 RGVAFVEFTEHQHALVALRVLNN 636
+G AFV+F A A+ +NN
Sbjct: 275 QGYAFVKFDNKDAAAKAIVQMNN 297
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 137 (53.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL I + F ++D FS G++ NV++ N +T S+GF FV F DA+ A++
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 258 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 287
NG+ R I VD A K GG + G
Sbjct: 66 MNGKSVDGRTIRVDEA-GKGGGGGGGRSGG 94
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 119 (46.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL + N+P+ + +F G V + +N DT S+GF FV + +AE A++K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 258 FNGQKFGKRPIAVDWAVPK 276
FN + R + V+ A P+
Sbjct: 174 FNSFEVNGRRLTVNRAAPR 192
Score = 81 (33.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 453
I++ NLP+D+D+ +++ FS G+VV V + T R +G GF++
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Score = 38 (18.4 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 613 SRGVAFVEFTEHQHALVALRVLN 635
SRG FV+ + VA+ L+
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALD 269
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 136 (52.9 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ + + N PF+ E+ + FS +G + NV I + +TG +GFAF++F + A+ A++
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 257 KFNGQKFGKRPIAVDWA 273
+ NG +F RP+ V+ A
Sbjct: 65 QMNGAEFNGRPLRVNLA 81
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 152 (58.6 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 274
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 275 -PKNIYSS 281
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 48 (22.0 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L D VVS++S
Sbjct: 178 PKSTYESNTKQLSYDEVVSQSS 199
Score = 42 (19.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFIRF 245
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 152 (58.6 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G + WA + T + + + ++ + ++++ F+
Sbjct: 59 RHAAAALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFA 118
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ F+ F K DAESAIQ+ NGQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
Score = 46 (21.3 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 207 TVYCGGIASGLSDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 248
Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 241 KGYSFVRFDSHEGAAHAIVSV 261
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 118 (46.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 63 EDSKTN---LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 119
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 116 (45.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 45/176 (25%), Positives = 78/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 115
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 VDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFA 231
Score = 84 (34.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRF 201
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 124 (48.7 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 47/176 (26%), Positives = 73/176 (41%)
Query: 130 SVTYPLPKEE---LEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ 186
+VT L +++ + Q + Q+ + A+ V V+ A Q G Q
Sbjct: 79 AVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQ 138
Query: 187 LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV---------YI----PHNTD 233
G GS + LI+ +P +EI+ +FS VG + +V YI P
Sbjct: 139 NGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPS 198
Query: 234 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
G S G+ FV + +DAE A+ NG + + I V +A P N+Y SG
Sbjct: 199 KGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSG 254
Score = 63 (27.2 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 599 LQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 635
+QS+K K T + +G FV T + A +A+R LN
Sbjct: 428 VQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALN 464
Score = 60 (26.2 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IFI NL + + + Q F FG V S V T + KG GF+
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFV 448
Score = 58 (25.5 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK--RPKGTGFLKF 454
+++ LP + +E++ F+ FG +++ +L + KG GF++F
Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITS-RILQNAGNDTQTKGVGFIRF 297
Score = 49 (22.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 555 VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSR 614
+ L + LPK+MT++ L +A+ + +I + LQ+ G DT+ ++
Sbjct: 245 IKGANLYVSGLPKTMTQQEL-----EAIFAPFGA---IITS-RILQNA--GN-DTQ--TK 290
Query: 615 GVAFVEFTEHQHALVALRVLN 635
GV F+ F + + A A+ LN
Sbjct: 291 GVGFIRFDKREEATRAIIALN 311
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ + + N PF+ +++ + FS G V NV I + +TG +GFAFV+FT + A+ A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 257 KFNGQKFGKRPIAVDWAVPKN 277
+FNG F R + V+ A +N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ + + N PF+ +++ + FS G V NV I + +TG +GFAFV+FT + A+ A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 257 KFNGQKFGKRPIAVDWAVPKN 277
+FNG F R + V+ A +N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 117 (46.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 117 (46.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 117 (46.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 117 (46.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 331
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 117 (46.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 82 (33.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 63 (27.2 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 309
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 117 (46.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 82 (33.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 117 (46.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 82 (33.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 323
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 117 (46.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 111 (44.1 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ +L Q T +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 53 (23.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 613 SRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652
SRGV F+ F + A A++ LN K G V+FA
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQ-KPLGAAEPITVKFA 203
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 117 (46.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 187 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 111 (44.1 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ +L Q T +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 53 (23.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 613 SRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652
SRGV F+ F + A A++ LN K G V+FA
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQ-KPLGAAEPITVKFA 203
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 117 (46.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 31/104 (29%), Positives = 48/104 (46%)
Query: 186 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
Q GG + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 78 QTGGSNDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 136
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 137 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 180
Score = 110 (43.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 62/261 (23%), Positives = 109/261 (41%)
Query: 23 VKHAMHRASLEQRRSKVTQEVQAEDIEKTMD-NKDGVISGAEKHSSKLLESGKTVKPRKA 81
+ ++ A L S TQ QA D+ + + G+++ + S + E T P A
Sbjct: 4 ISRTLNAALLSNEGSTETQWRQA-DLPQLQGWAEKGLLTQPKMIISNM-EPQVTNGPNSA 61
Query: 82 ATLGIDLADKEDCSQKQRV------ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYP 134
G ++ C + ++T +I L +M +E R L GSIG + S
Sbjct: 62 TANGPS-SNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK-- 118
Query: 135 LPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKT 194
L ++++ G + V Y K A ++ L+ ++ T+ +
Sbjct: 119 LVRDKIT-------GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 171
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
+ L + +P E++ +FS G + I + TG S+G F++F + +AE A
Sbjct: 172 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEA 231
Query: 255 IQKFNGQK-FGK-RPIAVDWA 273
I+ NGQK G PI V +A
Sbjct: 232 IKGLNGQKPSGAAEPITVKFA 252
Score = 83 (34.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRF 222
Score = 60 (26.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 371
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 117 (46.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 63 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 119
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 115 (45.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 115
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 201
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 350
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 117 (46.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 64 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 115 (45.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 202
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 352
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 117 (46.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 64 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 115 (45.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 202
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 108 (43.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + N+ + + +F G V + +N +T S+GF FV + +AE+
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 254 AIQKFNGQKFGKRPIAVDWAVPK 276
A++KFN R + V+ A P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 89 (36.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
+++ NLP+D+DN ++Q FS G+VV V + T R +G GF+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 101 (40.6 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
++ ++N+P K ++++D FS G + + + + D G S+ F F+ F ++A+ AI+
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSND-GKSRQFGFIGFRSAQEAQQAIKY 61
Query: 258 FNGQKFGKRPIAVDWA 273
FN G I V+ A
Sbjct: 62 FNNTYLGTSLIIVEIA 77
Score = 89 (36.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 402 DELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D++ +T +F+ NLP+ EE+ + FS FG++ VL + TKR +G ++ +
Sbjct: 288 DDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 342
Score = 62 (26.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 568 SMTEKGLKKLCIDAVVSRASKQ--KPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 625
S +K KL + + A+K+ + + ++S++ K + Y+ G AFVEF Q
Sbjct: 695 SNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYA-GYAFVEFVTKQ 753
Query: 626 HALVALRVLNNNPKTFGPEHRPIVEFAVDN 655
AL A + L + F H ++E+A D+
Sbjct: 754 EALNAKKALASTH--FYGRHL-VLEWANDD 780
Score = 56 (24.8 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 560 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQ-SLKKGKVDTKHYSRGVAF 618
L + NL T++GLKK +K ++KQ K L ++ K K + K+ S G F
Sbjct: 604 LNVKNLSFKTTDEGLKK--------HFTK---LVKQGKILSVTIIKHKKNEKYLSSGYGF 652
Query: 619 VEFTEHQHALVALRVL 634
VEF + A R L
Sbjct: 653 VEFDSVETATSVYRDL 668
Score = 40 (19.1 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 556 SRTRLVIYNLPKSMTEKGLKKL 577
S+ L++ NLP + TEK L ++
Sbjct: 486 SKHILLVKNLPFASTEKELAQM 507
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A ++ D F+ G + N+++ + TG KG+A V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETY 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ+ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQELMGQPISVDW 148
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 114 (45.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 36 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 95
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 96 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 136
Score = 114 (45.2 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 92
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 93 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 152
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 153 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 208
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 178
Score = 60 (26.2 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 314
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 149 (57.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 39/128 (30%), Positives = 65/128 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A +++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAASALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 274
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 275 -PKNIYSS 281
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VV+++S + +Q+ G++ + + +
Sbjct: 178 PKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 238 KGYSFVRFNSHESAAHAIVSV 258
Score = 41 (19.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 245
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 203 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++ NG++
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 263 FGKRPIAVDWAVP-KN 277
F R + VD A KN
Sbjct: 63 FSGRALRVDNAASEKN 78
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 114 (45.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 82 (33.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 60 (26.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 329
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 114 (45.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 82 (33.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 60 (26.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 329
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 114 (45.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 114 (45.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 82 (33.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 60 (26.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 334
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Score = 82 (33.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 60 (26.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 336
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Score = 82 (33.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 60 (26.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 336
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 114 (45.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 82 (33.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 60 (26.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 343
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 114 (45.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 54 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 113
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 114 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 154
Score = 114 (45.2 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 60 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 110
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 111 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 170
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 171 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 226
Score = 82 (33.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 196
Score = 60 (26.2 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 345
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 114 (45.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 42 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 101
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 102 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 142
Score = 114 (45.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 48 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 98
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 99 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 158
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 159 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 214
Score = 82 (33.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 184
Score = 60 (26.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 347
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 114 (45.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 114 (45.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 82 (33.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 60 (26.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 348
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 151 (58.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 37/118 (31%), Positives = 62/118 (52%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A AS+A ++ ++I G V WA + T + + + ++ + ++I+ F+
Sbjct: 58 RHAAASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFA 117
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA K
Sbjct: 118 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ V V KG F++F
Sbjct: 205 TVYCGGVTTGLTEQLMRQTFSPFGQIME-VRVFPD-----KGYSFVRF 246
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVIK----QIKFLQSLKK------GKV-DTKHY-S 613
PK+ E K L D VV+++S + + L + G++ + + +
Sbjct: 179 PKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD 238
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 239 KGYSFVRFNSHESAAHAIVSV 259
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 140 (54.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + ++I+ F+
Sbjct: 77 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFA 136
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 137 PFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 194
Score = 54 (24.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVIK----QIKFLQSLKK------GKV-DTKHY-S 613
PKS+ + K+L D VV+++S Q + Q + L + G++ + + +
Sbjct: 198 PKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPE 257
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +F+ F+ H+ HA+V++
Sbjct: 258 KGYSFIRFSSHESAAHAIVSV 278
Score = 45 (20.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 405 QN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
QN T++ + L ++Q FS FG+++ + V + KG F++F
Sbjct: 221 QNCTVYCGGIQSGLTEHLMRQTFSPFGQIME-IRVFPE-----KGYSFIRF 265
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 125 (49.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E S + KL + N+PF ++ +F G V V + ++ TG S+GF FV +
Sbjct: 84 EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVS 143
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVP 275
+ E+A Q+FNG + RP+ V+ P
Sbjct: 144 EVEAAAQQFNGYELDGRPLRVNAGPP 169
Score = 65 (27.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N +++ NL + +D+ ++ FS G+VV + + + R KG GF+ +
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 155 (59.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 185 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 244
+QL G SK +++ + + ++ + + ++KD F+P G + + + + T SKG+ FV
Sbjct: 84 QQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVS 143
Query: 245 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
F K +AE+AI NGQ G R I +WA K
Sbjct: 144 FVKKSEAETAITAMNGQWLGSRSIRTNWATRK 175
Score = 42 (19.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 614 RGVAFVEFTEHQHALVALRVLNN 636
+G AFV F+ + A A+ +NN
Sbjct: 241 KGYAFVRFSTKEAATHAIVAVNN 263
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 150 (57.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 63/270 (23%), Positives = 118/270 (43%)
Query: 36 RSKVTQEVQAEDIEKTMDN-KDGVISGAEKHSSKLLESGKTVKPRKA--ATLGIDLADKE 92
+++ T + + E+ + D+ D SG++ + + KT P K A + K+
Sbjct: 170 KAEKTDKAKKEETDSDSDSDSDSDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKK 229
Query: 93 DCSQKQRVARTVIIGGLL-NAD--MAEEVHRLAGSIGTVCSVT--------------YPL 135
+++ T+ +G L N D M E + G++ + +T +
Sbjct: 230 TKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFAT 289
Query: 136 PKEELEQHGLAQEGCKMDASAVL--YTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK 193
P+E + HG ++G +D + ++T K+ ++ A + + G TV S
Sbjct: 290 PEEAEKAHG-EKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTV------SPESD 342
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
T L + N+PF A + + FS V V ++ +P ++G KGF +V F DA+S
Sbjct: 343 T----LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGG 283
A ++ NGQ R +D++ P+ GG
Sbjct: 399 AFEQLNGQSINGRNCRLDYSTPRPPREDGG 428
Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+T+F+ NLPFD D + V FS EV S Q + R KG G++ F
Sbjct: 342 DTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTF 390
Score = 85 (35.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ + + + F G V + + + ++G SKGF +V F +AE A +
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 259 NGQKFGKRPIAVDWAVPKNIYSSGGAAA 286
G R I VD++ K S+ A A
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGA 328
Score = 55 (24.4 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 24/97 (24%), Positives = 40/97 (41%)
Query: 14 TSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE---DIEKTMDNKDGVISGAEKHSSKLL 70
+S +KI K +AS + ++ KV +++ D + + D EK +K
Sbjct: 29 SSAKSKKIA-KDVAVKASKKDKKKKVEVSSESDSDSDASDSSSDSDSESEVEEKKPTKAA 87
Query: 71 ESGKTVKPRKAATLGIDL-----ADKEDCSQKQRVAR 102
+GK K KA + D AD D S + A+
Sbjct: 88 TNGKAKKAAKAESSDSDSSSESEADSSDSSDSESDAK 124
Score = 46 (21.3 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 30 ASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLA 89
A E+ + V ++ A+ +EK+ ++ D ++ SS ES KP KA D A
Sbjct: 126 APKEKAATNVDKKAAAKKVEKS-ESSD-----SDSDSSDSDESDSDAKPAKAEKT--DKA 177
Query: 90 DKED 93
KE+
Sbjct: 178 KKEE 181
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 18/89 (20%), Positives = 37/89 (41%)
Query: 29 RASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLE-SGKTVKPRKAATLGID 87
+A+ + + VT+ Q + KD + ++K K +E S ++ A+ D
Sbjct: 12 KAAPAVKSAGVTKPSQTSSAKSKKIAKDVAVKASKKDKKKKVEVSSESDSDSDASDSSSD 71
Query: 88 LADKEDCSQKQRVARTVIIGGLLNADMAE 116
+D E ++++ + G A AE
Sbjct: 72 -SDSESEVEEKKPTKAATNGKAKKAAKAE 99
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 127 (49.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 127 (49.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 127 (49.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 127 (49.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 114 (45.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 112 (44.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 82 (33.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 60 (26.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 334
>CGD|CAL0002378 [details] [associations]
symbol:SBP1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0032055 "negative regulation of translation in response to
stress" evidence=IEA] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0031370 "eukaryotic initiation factor 4G
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002378
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000003
EMBL:AACQ01000004 eggNOG:NOG72438 RefSeq:XP_722924.1
RefSeq:XP_723070.1 ProteinModelPortal:Q5ANP6 GeneID:3635280
GeneID:3635396 KEGG:cal:CaO19.13276 KEGG:cal:CaO19.5854
Uniprot:Q5ANP6
Length = 282
Score = 135 (52.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSK------GFAFVKFTCKRDA 251
++ + N+ FKA +E+K++F + V V IP +T K GFAFV+F K DA
Sbjct: 17 RIYVGNVDFKATEDELKELFQDLK-VTEVEIPFKENTRGDKVFKRHLGFAFVQFENKDDA 75
Query: 252 ESAIQKFNGQKFGKRPIAVDWAVP 275
+ AI +NGQKF +R I + AVP
Sbjct: 76 DKAIATYNGQKFQRRNIFIKKAVP 99
Score = 100 (40.3 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVW-NV---YIPHNT-DTG------LSKGFAFVKFTC 247
+ I N+ +K V + +F + W +V +P+N G +KG AFVKF+
Sbjct: 169 IFITNLDYKVNVKTLNSLFKELKPKWIHVPSRRVPYNRRGRGGKFRKPFNKGIAFVKFSN 228
Query: 248 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 291
+ + A+ +FNG++ R I VD A+ I G V ++
Sbjct: 229 EETQKQAVAEFNGKEVNGREIIVDIAIDSRIPKEGSTEEDVDDE 272
Score = 69 (29.3 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ-EVQAEDIEKTMDNKDGVIS 60
+DA++A+ NG R I +K A+ + E+++ +V + + E+I+K + K
Sbjct: 73 DDADKAIATYNGQKFQRRNIFIKKAVPPPTEEEKKERVEAFKAKREEIKKVKEQKKA--E 130
Query: 61 GAEKHSSKLLESGKTVKPRKAAT 83
+K ++ T A T
Sbjct: 131 AKKKREGATADAATTANGESATT 153
Score = 52 (23.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 594 KQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 653
+++ + + + GK K +++G+AFV+F+ + A+ N + G E IV+ A+
Sbjct: 200 RRVPYNRRGRGGKF-RKPFNKGIAFVKFSNEETQKQAVAEFNGK-EVNGREI--IVDIAI 255
Query: 654 DN 655
D+
Sbjct: 256 DS 257
Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLK 453
++TIFI NL + ++ + + F VP +R +G F K
Sbjct: 166 KDTIFITNLDYKVNVKTLNSLFKELKPKWIHVPSRRVPYNRRGRGGKFRK 215
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 114 (45.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 112 (44.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 82 (33.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 60 (26.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 343
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 149 (57.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 184 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243
AR G + S L + N+PF A + + ++F P G V + +P + ++G KGF +V
Sbjct: 372 ARSFGDQTSPESD-TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYV 430
Query: 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 287
+++ +A A + G + RPI +D++ P+ GG G
Sbjct: 431 QYSSVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGGGGGGRG 474
Score = 89 (36.4 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 30/105 (28%), Positives = 46/105 (43%)
Query: 192 SKTQKW---KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
SKT++ L + N+ + + F G + + I DTG S+GF +V+FT
Sbjct: 269 SKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNA 327
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAV--PKNIYSSGGAAAGVQNK 291
DA A + + R I +D+A P N GG QN+
Sbjct: 328 ADAAKAYEAMKEHEIDGRKINLDYATGRPAN-KDQGGFKERAQNR 371
Score = 77 (32.2 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
QT E + T+F+ NLPF + + V + F G V+ + RPKG G++++
Sbjct: 378 QTSPESD---TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQY 432
Score = 47 (21.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 33 EQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKE 92
E ++++ + E +++ + + KD S +E S ES + KP K+A + K
Sbjct: 101 EAKKAESSSESESDSSDSDEEMKDA--SSSESDSES--ESEEEKKPAKSAKAEPKVVKKA 156
Query: 93 DCSQKQ 98
+ S+ +
Sbjct: 157 ESSESE 162
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 131 (51.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 54/184 (29%), Positives = 83/184 (45%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEE-LEQHGLAQEGCKMDASAVL 158
A+T +I L +M+ EE+ L SIG V S K + H G + V
Sbjct: 54 AKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTL--GHSLGYGFVN 111
Query: 159 YTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKD 215
Y A ++ L+ ++ T+ +AR +G K L I +P ++D
Sbjct: 112 YVNPSDAERAINTLNGLRLQSKTIKVSYARP-SSDGIKDAN--LYISGLPKTMTQKNVED 168
Query: 216 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FG-KRPIAVDWA 273
MF+ G + N I + +GLS+G AF++F + +AE AI+ NG K G PI V +A
Sbjct: 169 MFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFA 228
Query: 274 VPKN 277
N
Sbjct: 229 ANPN 232
Score = 99 (39.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 35/112 (31%), Positives = 50/112 (44%)
Query: 187 LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI---------PHNTDTGLS 237
+G E S K LII +P E++ +FS +G V + + H+T G S
Sbjct: 47 MGDEPSDA-KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHT-LGHS 104
Query: 238 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
G+ FV + DAE AI NG + + I V +A P N+Y SG
Sbjct: 105 LGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISG 156
Score = 66 (28.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 28/104 (26%), Positives = 45/104 (43%)
Query: 555 VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSR 614
+ L I LPK+MT+K ++ + R + ++ Q L SR
Sbjct: 147 IKDANLYISGLPKTMTQKNVEDMFTQ--YGRIINSRILVDQASGL-------------SR 191
Query: 615 GVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQT 658
GVAF+ F + A A++ LN + K G V+FA + Q+
Sbjct: 192 GVAFIRFDKRSEAEEAIKDLNGS-KPSGASEPITVKFAANPNQS 234
Score = 61 (26.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTSKCKGFGFV 332
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 114 (45.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 82 (33.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 60 (26.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 348
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 111 (44.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 82 (33.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 111 (44.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E SKT LI +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 250 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 82 (33.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 145 (56.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 201 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260
+ N+ + ++ ++F P G V VY+ + TG+S+GF FV F + DA+ AI K NG
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
Query: 261 QKFGKRPIAVDWAVPK 276
+ + V+WA P+
Sbjct: 304 YGYDNLILRVEWATPR 319
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 125 (49.1 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 20 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 79
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I
Sbjct: 80 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 129
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 140 (54.3 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAV-----PKNIYSS 281
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 50 (22.7 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VVS++S + +Q+ G++ + + +
Sbjct: 189 PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 249 KGYSFVRFSSHESAAHAIVSV 269
Score = 41 (19.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 124 (48.7 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 188 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 247
G + W + + NI +A +++ D FS G + N+++ + TG KG+A V++
Sbjct: 46 GAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYET 105
Query: 248 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 282
+++A AI + N + + VDW K +SG
Sbjct: 106 QKEANEAIDQSNDTDLLGQNVKVDWCFVKGKKTSG 140
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 123 (48.4 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA----VPKNIYSSGGA 284
+G R + V A P YS GA
Sbjct: 76 DGALLDGRELRVQMARYGRPPDAHYSRRGA 105
Score = 57 (25.1 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 745 RDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDAR-KSNSSEQAHFRSQKR 795
R KT+ P+R++ P R + ++ + +SN ++ RS+ R
Sbjct: 160 RSRSRSKTRTPRRSKSKSPSRSRSRSKSKSHSRSRTPRSNKGSKSRSRSRSR 211
Score = 40 (19.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 751 KTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
+++ P+R + R R + + ++ +R S S +++ RS+ R
Sbjct: 118 RSRSPRRRKHSR-SRSRSRSRSRSRSR-SRYSRSRSRSYSRSRSR 160
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 756 KRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQ 793
+R+R P R+K S + +R + S + RS+
Sbjct: 115 RRSRSRSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRSR 152
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 138 (53.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 64/246 (26%), Positives = 113/246 (45%)
Query: 40 TQEVQAEDIEKTMDNKDGVISGAEKHSSK-LLESGKTVKPRKAATLGIDLADKEDCSQKQ 98
T+ +A+D+ K+ K SS L+E+ K V T G A ED
Sbjct: 608 TKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDV------TEGSSNAHDEDVIDGP 661
Query: 99 RVARTVIIGGL----LNADMAEEVHRLAGSIGTVCSV-TYPLPKEE---LEQ-HGLAQEG 149
V+ + I L N ++ + G + V V T P PK + L G +
Sbjct: 662 TVS--IFIKNLNFSTTNQNLTDRFKVFTGFV--VAQVKTKPDPKHQGKTLSMGFGFVEFR 717
Query: 150 CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQK--WKLIIRNIPFK 207
K A+AV + + +V H+ ++K A Q G +K+ K K+I++N+PF+
Sbjct: 718 TKEQANAV----IAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFE 773
Query: 208 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 267
A ++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + +G R
Sbjct: 774 ATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVHLLGRR 832
Query: 268 IAVDWA 273
+ + +A
Sbjct: 833 LVMQYA 838
Score = 116 (45.9 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
Q +L +RNI + +K + + +FSP G + V++ +T TG SKGFA+V F ++A +A
Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNA 402
Query: 255 IQKFNGQKFGKR 266
+ + Q F R
Sbjct: 403 YVELDKQIFQGR 414
Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
I + NLPF+ ++V + F++FG++ S V V + K +G F++F
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEF 810
Score = 63 (27.2 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVL----HQVTKRPKGTGFLKF 454
+IFI NL F N+ + RF F G VV+ V HQ G GF++F
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEF 716
Score = 56 (24.8 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 28/98 (28%), Positives = 43/98 (43%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAM--------------HRASLEQRRSKVTQEVQAED 47
EDA AVE NG+ + KI V A R +L++ R K + +Q E+
Sbjct: 68 EDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEKLLQEEN 127
Query: 48 IEKTM--DNKDGVISGAEKHSSKLLESGKTVKPRKAAT 83
+K +NK I + + +L E +T+KP T
Sbjct: 128 RKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQVT 165
Score = 51 (23.0 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 31/137 (22%), Positives = 54/137 (39%)
Query: 567 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKH--YSRGVAFVEFTEH 624
K+ + K K+ + + A++ K V + LK +V K +RG AFVEF
Sbjct: 755 KTKSNKKSGKIIVKNLPFEATR-KDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813
Query: 625 QHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLXXXXXXXXXXXXXXVESNTMDTYPN 684
+ A A+ L+ G R ++++A ++ V +N M N
Sbjct: 814 KEAENAMDQLHG-VHLLG--RRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRN 870
Query: 685 KLEKSRKRKPIGDSRSE 701
RK+ + D +E
Sbjct: 871 G--GGRKKLDVDDEENE 885
Score = 45 (20.9 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 598 FLQSLKKGKVDTKHY----SRGVAFVEF-TEHQ-HALVA 630
F+ + K K D KH S G FVEF T+ Q +A++A
Sbjct: 689 FVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIA 727
Score = 44 (20.5 bits), Expect = 6.4e-05, Sum P(4) = 6.4e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEV 432
I + N PF EE+ + F +G++
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKL 558
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/190 (25%), Positives = 84/190 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAVPK 276
I +WA K
Sbjct: 176 QIRTNWATRK 185
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 136 (52.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
+ L++ NI F+ +++ +F+ G V +V+IP + TG S+GFAFV++ K +A A++
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 257 KFNGQKFGKRPIAVDWA 273
+ +G+ R I V +A
Sbjct: 76 RLDGRVVDGREITVQFA 92
Score = 49 (22.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 751 KTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSE--QAHFRSQKRKLGY 799
+++ P+R+R R R P + + R+ + + + +R + R Y
Sbjct: 117 RSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSY 167
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 150 (57.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 172 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN 231
+ ++E+K G A++ K K+++RNIPF+A V E++++F G + V +P
Sbjct: 780 ISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKK 839
Query: 232 TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIAVDWA 273
G +GF F+ F K+DA+ A + +G+R + ++WA
Sbjct: 840 GIGGSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRR-LVLEWA 882
Score = 112 (44.5 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E + +L IRN+P+ ++K++FS G + V P ++ T KGFAFV +
Sbjct: 392 EEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPE 451
Query: 250 DAESAIQKFNGQKFGKRPIAV 270
+A SA+ + +G F R + V
Sbjct: 452 NAVSALAQLDGHTFQGRVLHV 472
Score = 88 (36.0 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+LI++N+P K + + MF+ G + + + D G + F FV F + DA+ A++
Sbjct: 3 RLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKD-GKFRKFGFVGFKTEEDAQKALKH 61
Query: 258 FN 259
FN
Sbjct: 62 FN 63
Score = 86 (35.3 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 399 EGEDELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
E ED ++ +FI N+P+ E++K+ FS G + + + +TK+PKG F+ +
Sbjct: 391 EEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTY 447
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 567 KSMTEKGL-KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 625
K T K L + + A V + ++K ++ KKG + H RG F++F Q
Sbjct: 801 KQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKG-IGGSH--RGFGFIDFLTKQ 857
Query: 626 HALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTL 659
A A L ++ +G R ++E+A D +T+
Sbjct: 858 DAKKAFSALCHSTHLYG--RRLVLEWA-DAEETV 888
Score = 52 (23.4 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 397 QTEGEDELQ--NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPK----GTG 450
+ E +D++ +T+FI NL F E +++ FS G VV + + K K G G
Sbjct: 691 EEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCG-VVKSCTISKKRDKAGKLLSMGYG 749
Query: 451 FLKF 454
F+++
Sbjct: 750 FVQY 753
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 143 (55.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 146 (56.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/134 (31%), Positives = 64/134 (47%)
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSK--TQKWKLIIRNIPFKAKVNEIKDMF 217
TT +A + L +KEIK WA G + + + + ++ + + +++ F
Sbjct: 59 TTALTAM-NKRLFLEKEIKVN--WATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF 115
Query: 218 SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV--- 274
+P G + N I + T SKG+AFV F K +AE+AIQ NGQ G R I +W+
Sbjct: 116 APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Query: 275 -PKNIYSSGGAAAG 287
P S GG G
Sbjct: 176 PPPREPSKGGGQGG 189
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 143 (55.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 39 (18.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 98 (39.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L I +P + ++ +FS G + + + + +TGLS+GF FVKF A+ AI
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 259 NGQKFGKRPIAVDWA 273
NG K + + V +A
Sbjct: 161 NGAKVENKTLLVRFA 175
Score = 98 (39.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 360 LVK-GNKEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDE--LQNTIFICNLPFD 416
LV+ N + +S+ T N S +D T DE + N +FI LP +
Sbjct: 171 LVRFANSDPNSNNT-NNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIE 229
Query: 417 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D ++ + FSA+GEVV ++ T +G G +++
Sbjct: 230 FDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRY 267
Score = 68 (29.0 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 453
+++ NLP D D+ + + FS G + S V Q T+ +G GF++
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVR 429
Score = 39 (18.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 558 TRLVIYNLPKSMTEKGLKKL 577
T L +YNLP + L +L
Sbjct: 382 TNLYVYNLPSDADDSLLYRL 401
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
W +II NI +A+ + IK++F G + N+++ + TG KG+AF+++ DA+ AI
Sbjct: 23 WIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAID 82
Query: 257 KFNGQKFGKRPIAVDWA 273
+ +G + I VDWA
Sbjct: 83 EMDGTMLLNQEIHVDWA 99
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
W +II NI +A+ + IK++F G + N+++ + TG KG+AF+++ DA+ AI
Sbjct: 23 WIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAID 82
Query: 257 KFNGQKFGKRPIAVDWA 273
+ +G + I VDWA
Sbjct: 83 EMDGTMLLNQEIHVDWA 99
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 143 (55.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 247
Score = 41 (19.5 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 240 KGYSFVRFSTHESAAHAIVSV 260
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSS 201
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 143 (55.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 247
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 240 KGYSFVRFSTHESAAHAIVSV 260
Score = 40 (19.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSS 201
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 143 (55.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 75 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 134
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 135 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 192
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 222 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 263
Score = 41 (19.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 256 KGYSFVRFSTHESAAHAIVSV 276
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 196 PKSTQENNTKQLRFEDVVNQSS 217
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 40 (19.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 40 (19.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 39 (18.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 163 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 218
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 219 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F+ H+ HA+V++
Sbjct: 257 KGYSFVRFSTHESAAHAIVSV 277
Score = 39 (18.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + +I +A+ +EI++ F G + N+++ + TG SKG+A V++
Sbjct: 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 124
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAV---PKNIYSS 281
+ A +A + NG + + I VDW PK + S
Sbjct: 125 KQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKS 160
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A +
Sbjct: 3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQ 289
A++ NG+ R I VD A S GGA G +
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGYE 98
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL I + F + + FS G V I + + SKGF FV F +A+ A+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 258 FNGQKFGKRPIAVDWAVPKNIYSSGG 283
FNGQ+ R I VD+A K GG
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGG 120
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 121 (47.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE+ L GSIG + S L ++++ EG + V Y
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT------EGQSLGYGFVNY 115
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 273
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Score = 108 (43.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCK 248
E SKT LI+ +P E+K +F +G + + + + T G S G+ FV +
Sbjct: 62 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDP 118
Query: 249 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 82 (33.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
Score = 63 (27.2 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 352
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 139 (54.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 42/149 (28%), Positives = 68/149 (45%)
Query: 139 ELEQHGLAQEG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKW 197
E +H A M+ ++ VK A+ +K+ TV + Q + +
Sbjct: 48 EFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HF 102
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+ + ++ + +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 258 FNGQKFGKRPIAVDWAV-----PKNIYSS 281
GQ G R I +WA PK+ Y S
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAPKSTYES 191
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 566 PKSMTEKGLKKLCIDAVVSRAS 587
PKS E K+L D VVS++S
Sbjct: 185 PKSTYESNTKQLSYDEVVSQSS 206
Score = 42 (19.8 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 211 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFIRF 252
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 116 (45.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255
K LII +P E++ +F+ +G + + + + TG S G+ FV + + DA A+
Sbjct: 41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100
Query: 256 QKFNGQKFGKRPIAVDWAVPKN 277
FNG + + I V +A P N
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSN 122
Score = 111 (44.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 41/157 (26%), Positives = 69/157 (43%)
Query: 104 VIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 163
+II L EEV L SIG + S L ++++ G + V Y +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCK--LVRDKVT-------GQSLGYGFVNYVREE 94
Query: 164 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 223
A +V+ + ++ T+ + + L + IP ++E++ +F P G +
Sbjct: 95 DALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQI 154
Query: 224 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260
I + TGLSKG FV+F K +A+ AI+ NG
Sbjct: 155 ITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 75 (31.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
+F+ NL D D+ + Q FS FG +V+ V +L +T++ KG F+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVN-VKILRDLTQQCKGYAFV 419
Score = 69 (29.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 402 DELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D+++ + +++ +P + E++ F FG++++ + VT KG GF++F
Sbjct: 123 DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRF 176
Score = 57 (25.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 613 SRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652
S+GV FV F + A VA++ LN + + G + V+FA
Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPS-GCSEQITVKFA 206
Score = 50 (22.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 744 LRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKRKLGYQTEG 803
L DN G +KG R D+ D + DV T N + S SEQ + +G
Sbjct: 160 LSDNVTGLSKGVGFVRFDKKD--EADVAIKTL-NGSIPSGCSEQITVKFANNPASNNPKG 216
Query: 804 LVGD 807
L+ D
Sbjct: 217 LLSD 220
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 608 DTKHYSRGVAFVE---FTEHQHALVALRVLNNNPKT 640
D +G AFV +TE +A+++L N KT
Sbjct: 408 DLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKT 443
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 68 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 127
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 128 KEAQAAMEGLNGQDLMGQPISVDW 151
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 189 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 68 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 127
Query: 249 RDAESAIQKFNGQKFGKRPIAVDW 272
++A++A++ NGQ +PI+VDW
Sbjct: 128 KEAQAAMEGLNGQDLMGQPISVDW 151
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 121 (47.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256
W +I NI +A ++ D+F+ G + N + + TG KG+A ++++ +A AI+
Sbjct: 42 WIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIK 101
Query: 257 KFNGQKFGKRPIAVDWAV----PKNIYSSGGAAA-GVQNK 291
+ NG K + I VD+A P N SGG G +N+
Sbjct: 102 ELNGTKLLDQTIEVDYAFVRPPPSNKGKSGGRGGRGGRNR 141
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 128 (50.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA----VPKNIYSSGG 283
+G R + V A P + Y GG
Sbjct: 76 DGAILDGRELRVQMARYGRPPDSYYGGGG 104
Score = 47 (21.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 745 RDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +G +++ P+R R+ R R + S + +R S S +++ RS+ +
Sbjct: 117 RRHGARRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSRSRSYSRSRSK 163
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 757 RNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R+R R K K +S S ++ RS+ R
Sbjct: 153 RSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSR 191
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 201 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 261 QKFGKRPIAVDWAVPKN 277
+ + V+W P N
Sbjct: 240 IRMYHMVLKVEWTRPSN 256
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 140 (54.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAV-----PKNIYSS 281
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VV+++S + +Q+ G++ + + +
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 249 KGYSFVRFNSHESAAHAIVSV 269
Score = 41 (19.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 140 (54.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAV-----PKNIYSS 281
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VV+++S + +Q+ G++ + + +
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 249 KGYSFVRFNSHESAAHAIVSV 269
Score = 41 (19.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 287
A++ NG+ R I VD A S GGA G
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGG 96
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 143 (55.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 256
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A Q
Sbjct: 833 KILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQ 892
Query: 257 KF--NGQKFGKRPIAVDWA 273
+ +G+R + ++WA
Sbjct: 893 ALCHSTHLYGRR-LVLEWA 910
Score = 95 (38.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 42/206 (20%), Positives = 81/206 (39%)
Query: 397 QTEGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ E E++L ++ +FI NLP+ E++++ FS FG + + +TK+PKG F+ F
Sbjct: 394 ENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTF 453
Query: 455 XXXXXXXXXXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLA 514
G L T+ K K E+ D N +
Sbjct: 454 IFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDKANSSSS 513
Query: 515 KEG--LILEGTPAAEGVSDD-DMSKRQML-HEKKMTKLQSPNFHVSRTRLVIYNLPKSMT 570
L + A+ ++ + +K Q+ HE K + + + T+LV + + +
Sbjct: 514 HNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSV--AVRVALGETQLV-QEVRRFLL 570
Query: 571 EKGLKKLCIDAVVSRASKQKPVIKQI 596
+ G+ + SK ++K +
Sbjct: 571 DNGVSLDSFSQAAAERSKTVILVKNL 596
Score = 90 (36.7 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 186 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245
Q E SKT ++++N+P V E+++ F G + V +P G++ A V+F
Sbjct: 581 QAAAERSKTV---ILVKNLPAGTLVAELQETFGRFGSLGRVLLPEG---GIT---AIVEF 631
Query: 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 281
+A A + KF P+ ++WA P ++SS
Sbjct: 632 LEPLEARKAFRHLAYSKFHHTPLYLEWA-PVGVFSS 666
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+LI++N+P K + + +F+ G + + + D G + F F+ F + +A SA+
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEALSALNH 61
Query: 258 FNGQKFGKRPIAVDW 272
FN I V++
Sbjct: 62 FNRSFIDTSRITVEF 76
Score = 78 (32.5 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
I + N+PF D E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 834 ILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Score = 53 (23.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 75 TVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYP 134
+ KP + TLG + ++ED + R+ I L E++ RL G + + YP
Sbjct: 383 SAKPWQGRTLG-ENEEEEDLADSGRL----FIRNLPYTSTEEDLQRLFSKFGPLSELHYP 437
Query: 135 LPKEELEQHGLA 146
+ + G A
Sbjct: 438 IDSLTKKPKGFA 449
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 614 RGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNV 656
RG FV+F Q A A + L ++ +G R ++E+A V
Sbjct: 874 RGFGFVDFLTKQDAKRAFQALCHSTHLYG--RRLVLEWADSEV 914
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 146 (56.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 65/252 (25%), Positives = 106/252 (42%)
Query: 36 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCS 95
+ K Q+ +E +EK + V G E G K + ++E+
Sbjct: 668 QKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKME----EEEEEEEEE 723
Query: 96 QKQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTYPLPKEE-LEQHGLAQEGCK 151
++ T+ I L N D EE + + +GTV CS++ K L G +
Sbjct: 724 EESLPGCTLFIKNL-NFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYR 782
Query: 152 MDASAVLYTTVKSACASVALLHQKEI-------KGGTVWARQLGGEGSKTQKWKLIIRNI 204
A +K V H+ E+ K AR+ +T K+++RNI
Sbjct: 783 KPEQA--QKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS-KILVRNI 839
Query: 205 PFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQ 261
PF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A +
Sbjct: 840 PFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTH 899
Query: 262 KFGKRPIAVDWA 273
+G+R + ++WA
Sbjct: 900 LYGRR-LVLEWA 910
Score = 109 (43.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 29/109 (26%), Positives = 53/109 (48%)
Query: 183 WARQLGGEGSK----TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSK 238
W ++ GE + + +L +RN+P+ + +++ +FS G + ++ P ++ T K
Sbjct: 384 WQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPK 443
Query: 239 GFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 287
GFAF+ F A A + +GQ F R + V + K S +A G
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALG 492
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
I + N+PF + E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Score = 67 (28.6 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 397 QTEGEDELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVS 434
+ E E+ L T+FI NL FD E++K+ FS G V S
Sbjct: 720 EEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 614 RGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTL 659
RG FV+F Q A A L ++ +G R ++E+A D+ TL
Sbjct: 874 RGFGFVDFLTKQDAKRAFNALCHSTHLYG--RRLVLEWA-DSEVTL 916
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 119 (46.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL + + + + +K F+ G V + + +TG S+GF FV F+C+ A +AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 258 FNGQKFGKRPIAVDWAV-----PKNIYSSGGAAAG 287
+G++ R I V+ A P++ + GG G
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSFGGGGGYGG 130
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 112 (44.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255
K LI+ +P E K +F +G + + + + TG S G+ FV + DA+ AI
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 256 QKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
NG K + I V +A P N+Y SG
Sbjct: 97 NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 130
Score = 108 (43.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 42/177 (23%), Positives = 79/177 (44%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M EE L GSIG + S L ++++ G + V Y
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 86
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
A ++ L+ +++ T+ + + L + +P +++ +FS
Sbjct: 87 VDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 220 VG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 273
G ++ + + G+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 73 (30.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR-PKGTGFLKF 454
+++ LP + ++++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRF 173
Score = 61 (26.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 322
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 138 (53.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAV-----PKNIYSS 281
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 46 (21.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VV+++S + +Q+ G++ + + +
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 249 KGYSFVRFNSHESAAHAIVSV 269
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 143 (55.4 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 193 KTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRD 250
K QK K+++RNIPF+A V EI+++FS G + V +P TG +GF FV F K+D
Sbjct: 490 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 549
Query: 251 AESAIQKF--NGQKFGKRPIAVDWA 273
A+ A + +G+R + ++WA
Sbjct: 550 AKKAFNALCHSTHLYGRR-LVLEWA 573
Score = 103 (41.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E ++ +L +RN+PF + +++ +FS G + ++ P + T KGFAF+ +
Sbjct: 71 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 130
Query: 250 DAESAIQKFNGQKFGKR 266
A A + +GQ F R
Sbjct: 131 HAVKAYAEMDGQVFQGR 147
Score = 69 (29.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
I + N+PF E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 497 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF 544
Score = 55 (24.4 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 25/94 (26%), Positives = 41/94 (43%)
Query: 567 KSMTEKGL-KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 625
K T K L + + A V + ++K ++ KK H RG FV+F Q
Sbjct: 491 KQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSH--RGFGFVDFLTKQ 548
Query: 626 HALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTL 659
A A L ++ +G R ++E+A D +T+
Sbjct: 549 DAKKAFNALCHSTHLYG--RRLVLEWA-DTEETV 579
Score = 53 (23.7 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 397 QTEGEDELQN----TIFICNLPFDLDNEEVKQRFSAFGEVVS 434
+ E EDE ++ T+FI NL F +K+ FS G V S
Sbjct: 380 EDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKS 421
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 106 (42.4 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDA 251
K + +L + NIP + ++ DMF P G V +V + N TG S+G +V A
Sbjct: 104 KPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSA 163
Query: 252 ESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ AI +G + G R + V ++V N
Sbjct: 164 KIAIASLDGTEVGGREMRVRYSVDMN 189
Score = 74 (31.1 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKF 454
E Q+ +++ NLP+ + ++ FS FG +VS VLH + T R + FL F
Sbjct: 210 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVS-TRVLHDRKTGRNRVFAFLSF 261
Score = 40 (19.1 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 VTQEVQAEDIEK--TMDNKDGVISGAE 63
V E + E++ K NKD V+S AE
Sbjct: 74 VLDEEKEEEVVKGEAEPNKDSVVSKAE 100
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 138 (53.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 147
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 148 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 267 PIAVDWAV-----PKNIYSS 281
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 46 (21.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 566 PKSMTEKGLKKLCIDAVVSRASKQKPVI----------KQIKFLQSLKKGKV-DTKHY-S 613
PKS E K+L D VV+++S + +Q+ G++ + + +
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248
Query: 614 RGVAFVEFTEHQ---HALVAL 631
+G +FV F H+ HA+V++
Sbjct: 249 KGYSFVRFNSHESAAHAIVSV 269
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 121 (47.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 41/163 (25%), Positives = 75/163 (46%)
Query: 101 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 159
++T +I L +M++ E+ L SIG V S L ++++ H L V Y
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY-------GFVNY 82
Query: 160 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219
A +++ L+ ++ T+ + L I +P ++++MF
Sbjct: 83 LNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGR 142
Query: 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
G + N + + +GLS+G AF++F + +AE AI+ NGQK
Sbjct: 143 YGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 115 (45.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 250
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 252 GNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEE 311
Query: 251 AESAIQKFNGQKFGKRPIAVDWAVPKN 277
A AI NG + G + + V + K+
Sbjct: 312 AAMAIASLNGYRLGDKILQVSFKTSKS 338
Score = 111 (44.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255
K LI+ +P +E++ +FS +G V + + + G S G+ FV + DAE AI
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 256 QKFNGQKFGKRPIAVDWAVPK-------NIYSSG 282
NG + + I V +A P N+Y SG
Sbjct: 93 STLNGLRLQSKTIKVSYARPSSDSIKDANLYISG 126
Score = 66 (28.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 402 DELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D +++ ++I LP + ++V++ F +G +++ ++ Q + +G F++F
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRF 168
Score = 62 (26.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 304
Score = 62 (26.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 555 VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSR 614
+ L I LPK+MT+K ++++ R + ++ Q L SR
Sbjct: 117 IKDANLYISGLPKTMTQKDVEEMF--GRYGRIINSRVLVDQASGL-------------SR 161
Query: 615 GVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652
GVAF+ F + A A++ LN K G + V+FA
Sbjct: 162 GVAFIRFDKRAEAEDAIKDLNGQ-KPPGAAEQMTVKFA 198
Score = 47 (21.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
DA RA+ NG + + I V +A R S + + + + KTM KD
Sbjct: 87 DAERAISTLNGLRLQSKTIKVSYA--RPSSDSIKDA---NLYISGLPKTMTQKD 135
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 110 (43.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 171 LLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 229
LL+ K++ G RQ +KT+ + ++N+ +++K+ F G + + +
Sbjct: 188 LLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVM 247
Query: 230 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ + G SKGF FV F DA A++ NG KF + V A K+
Sbjct: 248 KDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Score = 79 (32.9 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 399 EGEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
E D+ Q++ +++ NL + +E++K+ FS FG V S V+ KG+GF+ F
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSS-KVMRDPNGTSKGSGFVAF 365
Score = 45 (20.9 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNK 55
+DA RA++ N + G+ I V ++ HR RRS + +++++++D+K
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYS-HRDP-SVRRSGAGN-IFIKNLDESIDHK 138
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 118 (46.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 291
A++ NG+ R I VD A K+ + G A G + +
Sbjct: 63 AMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFGARGR 99
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 188 GGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 246
GG+ G + L + N+ A+ E++DMF G V V++ + DTGL+KGFAF+ F
Sbjct: 213 GGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFA 272
Query: 247 CKRDAESAIQKFNGQKFGKRPIAVDWA 273
+ DA A K +G F + V++A
Sbjct: 273 DREDAVKACNKMDGWGFKHLILRVEFA 299
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 122 (48.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 49 (22.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 735 PASDEAEVSLRDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFR 791
P S R +++ R+R R R + +++K AR+S S + R
Sbjct: 107 PRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSR 166
Query: 792 SQKR 795
S+ R
Sbjct: 167 SRSR 170
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 103 (41.3 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 75 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 133
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 134 NGQFLFDRPMHVKMDDKSVPHEDYRS 159
Score = 84 (34.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 360 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 406
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 135 (52.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 188 GGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 246
GG G + + L++RNIP + E+++ F G V +VYIP + +G +GFAFV+F
Sbjct: 37 GGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFV 96
Query: 247 CKRDAESAIQKFNGQKFGKRPIAV 270
DA A + N + F R I V
Sbjct: 97 DAYDAGEAQRSMNRRSFAGREITV 120
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 94 (38.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272
+KD+F G +V + + ++G SKGF FV F DA+ A+ + NG++ + I V
Sbjct: 5 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 273 AVPK 276
A K
Sbjct: 64 AQKK 67
Score = 55 (24.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVS 434
+++ NL +D+E +++ FS FG + S
Sbjct: 94 LYVKNLDDGIDDERLRKEFSPFGTITS 120
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 143 (55.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 61/256 (23%), Positives = 121/256 (47%)
Query: 30 ASLEQRRSKVTQEVQAEDIEK-TMDNKDGV---ISGAEKHSSKLLESGKTVKPRKAATL- 84
A+ +++ S+ Q + ++E+ T+ + +G + GAE + K+ E + + + ++
Sbjct: 661 AAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIP 720
Query: 85 GIDLADKE-DCSQKQRVARTVI--IGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE 141
G L K + S + + V +G + + ++++ ++ AG + ++ K E
Sbjct: 721 GCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK-AGVLLSMGFGFVEYKKPEQA 779
Query: 142 QHGLAQ-EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLI 200
Q L Q +G +D L + AL ++ +Q+ K K++
Sbjct: 780 QKALKQLQGHTVDGHK-LEVRISERATKPALTSTRK--------KQVP---KKQTTSKIL 827
Query: 201 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF- 258
+RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A
Sbjct: 828 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC 887
Query: 259 -NGQKFGKRPIAVDWA 273
+ +G+R + ++WA
Sbjct: 888 HSTHLYGRR-LVLEWA 902
Score = 101 (40.6 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 178 KGGTVWARQLGGEGSKTQ----KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 233
K T W + GE + + +L +RN+ + + +++ +FS G + ++ P ++
Sbjct: 377 KSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL 436
Query: 234 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270
T KGFAFV F A A + +GQ F R + V
Sbjct: 437 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473
Score = 74 (31.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
I + N+PF + E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF 873
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 121 (47.7 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+L IRNI ++A + + +FS G + V+I +T TG SKGF +V+F K DA A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 258 FNGQKFGKR 266
+ Q F R
Sbjct: 371 LDKQIFQGR 379
Score = 71 (30.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 30/127 (23%), Positives = 51/127 (40%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXX 467
I I NLPF+ +++ + F AFG++ S V V + + +G F++F
Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKS-VRVPKKFDQSARGFAFVEFNLMKEAETAMSQL 777
Query: 468 XXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDK-SKNETNDHRNLYLAKEGLILEGTPAA 526
G+ L GR+L + EI++ +K LA L +G
Sbjct: 778 E-----GVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNLAAARLAGKGKIEL 832
Query: 527 EGVSDDD 533
E ++D
Sbjct: 833 EEKDEED 839
Score = 52 (23.4 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 399 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 432
E +D++ I + N PF +E+ + FSA+G++
Sbjct: 489 ERDDKI---ILVKNFPFGTTIDEIGELFSAYGQL 519
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 598 FLQSLKKGKVDTKH----YSRGVAFVEFTEHQHALVALRVLNNN 637
F+ + K K D K+ S G FVEF + A VA+ L+ +
Sbjct: 643 FVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGH 686
Score = 45 (20.9 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 547 KLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGK 606
KLQ H T ++ KS K+ I + A++ K +++ LK +
Sbjct: 692 KLQLKLSHKQGTGTSASSIKKSGKSS---KIIIKNLPFEATR-KDLLELFGAFGQLKSVR 747
Query: 607 VDTK--HYSRGVAFVEFTEHQHALVALRVL 634
V K +RG AFVEF + A A+ L
Sbjct: 748 VPKKFDQSARGFAFVEFNLMKEAETAMSQL 777
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 103 (41.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 184 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 242
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 243 NGQFLFDRPMHVKMDDKSVPHEDYRS 268
Score = 84 (34.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 415 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 461
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 105 (42.0 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 37/136 (27%), Positives = 62/136 (45%)
Query: 149 GCKMDASAVLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIP 205
G + + Y +SA + LH QK + G T + + E S+ + KL + +
Sbjct: 174 GMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQVKPADSE-SRGEDRKLFVGMLN 232
Query: 206 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265
+ ++ +F P G++ + D G SKG AFVKF+ +A+SAI +G +
Sbjct: 233 KQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISALHGSQ--T 289
Query: 266 RPIAVDWAVPKNIYSS 281
P D +P+ SS
Sbjct: 290 MPTGSDSLLPQGASSS 305
Score = 84 (34.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EGE +FI +LP + + E+ Q F FG V+S + + T + K GF+ F
Sbjct: 503 QREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSF 560
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 116 (45.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 291
A++ NG+ R I VD A K+ + G A G +
Sbjct: 63 AMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFGAHGR 99
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 104 (41.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSSGGAAA 286
NGQ RP+ V D +VP Y S + A
Sbjct: 294 NGQFLFDRPMHVKMDDKSVPHEDYRSHDSKA 324
Score = 84 (34.6 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 466 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 512
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 119 (46.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 43/124 (34%), Positives = 60/124 (48%)
Query: 157 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK----TQKWKLIIRNIPFKAKVNE 212
V Y T KSA + LH +I G Q+ S+ + KL + I K N+
Sbjct: 102 VTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNEND 161
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--G-KRPIA 269
I+ MFSP G + I D GLS+G AFV FT ++ A+SAI+ + + G PI
Sbjct: 162 IRLMFSPYGQIEECRILRGPD-GLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIV 220
Query: 270 VDWA 273
V +A
Sbjct: 221 VKFA 224
Score = 68 (29.0 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + ++++ Q F FG V+S + + T K GF+ +
Sbjct: 443 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSY 498
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 119 (46.9 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 37/145 (25%), Positives = 65/145 (44%)
Query: 147 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 202
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 143 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 202
Query: 203 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ +K+ F G V I + +TG SKGF FV F + DA++A + +
Sbjct: 203 GLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 259
Query: 263 FGKRPIAVDWAVPKNIYSSGGAAAG 287
+ +DWA PK GG G
Sbjct: 260 IDGNKVTLDWAKPKGEGGFGGRGGG 284
Score = 59 (25.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGA 62
DA + E K GT + GR I + + + + R ++D KT D +
Sbjct: 42 DAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG-KNSTWSDDSRKT-DQSSAYVRTT 99
Query: 63 EKHSSKLLESGKTV 76
+ +L KT+
Sbjct: 100 SRTLQHVLGESKTL 113
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 103 (41.3 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 182 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 240
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 241 NGQFLFDRPMHVKMDDKSVPHEDYRS 266
Score = 84 (34.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 456 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 502
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 115 (45.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 212 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271
+++++F P G + +Y+ + TG SKGFAF+ F + DA AI +G + + V+
Sbjct: 52 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 111
Query: 272 WAVP 275
WA P
Sbjct: 112 WAKP 115
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 115 (45.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
K+++RN+PF + +K FS G + V + + SKG+AF++FT + DA AI+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 258 FNGQKFGKRPIAVDWAVP 275
+ + + R I +D A P
Sbjct: 101 MDRRMYNGRMIYIDIAKP 118
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 138 (53.6 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VGLV + + ++ +TG KG+ F ++ + A SA++
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 86 NGREFSGRALRVDNAASEKN 105
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 131 (51.2 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 55 (24.4 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 572 KGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVAL 631
+G + + AVV + S+Q PV++ + +G +S G + V +H+ A + +
Sbjct: 486 QGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGGFSPGQSQVTPQDHEKAALIM 545
Query: 632 RVLNNNPKTFG---PEHRPIVEFAVDNVQ 657
+VL PE R + + +Q
Sbjct: 546 QVLQLTADQIAMLPPEQRQSILILKEQIQ 574
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 103 (41.3 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 490 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 536
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 103 (41.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 497 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 543
>TAIR|locus:2153659 [details] [associations]
symbol:EIF3G2 "eukaryotic translation initiation factor
3G2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003743 GO:GO:0005852 EMBL:AB017060 KO:K03248
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 HSSP:P11940 IPI:IPI00528477 RefSeq:NP_196219.3
UniGene:At.20561 ProteinModelPortal:Q9FI86 SMR:Q9FI86 STRING:Q9FI86
PRIDE:Q9FI86 EnsemblPlants:AT5G06000.1 GeneID:830487
KEGG:ath:AT5G06000 TAIR:At5g06000 InParanoid:Q9FI86 OMA:KFNDEGK
PhylomeDB:Q9FI86 ProtClustDB:CLSN2925586 Genevestigator:Q9FI86
Uniprot:Q9FI86
Length = 308
Score = 134 (52.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 185 RQLGGEGSKTQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 242
R+ GG +++ + +R N+ + ++ ++F P G V ++ + T +S+GF F
Sbjct: 192 RKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGF 251
Query: 243 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
V F + DA+ AI K NG + + V+W+ PK
Sbjct: 252 VSFVSREDAQRAINKLNGYGYDNLILRVEWSTPK 285
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 103 (41.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 560
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 294 NGQFLFDRPMHVKMDDKSVPHEEYRS 319
Score = 84 (34.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 569
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 134 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 192
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 193 NGQFLFDRPMHVKMDDKSVPHEDYRS 218
Score = 84 (34.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 534 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 580
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ T+ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRTRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 44 (20.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 747 NGEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
+G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 113 SGYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 259 NGQKFGKRPIAVDWA 273
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 745 RDNGEGKTKGPKRNRKDRP---DRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
R +++ R+R R R + +++K AR+S S + RS+ R
Sbjct: 129 RSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 748 GEGK-TKGPKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQKR 795
G G+ ++ P+R R+ R R + S + +R S S ++ RS+ R
Sbjct: 114 GYGRRSRSPRRRRRSR-SRSR---SRSRSRSRSRYSRSKSRSRTRSRSR 158
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 131 (51.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+P+ + D+F+ +G V I + TG SKGF V+F + DA S+I+K
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 259 NGQKFGKRPIAVDWA 273
NG ++G RP+ + +A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 51 (23.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 147 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWAR 185
QEG V+ +++K A ++ +LH + G T+ R
Sbjct: 214 QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 252
>UNIPROTKB|H0YN19 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC066612
EMBL:AC090526 HGNC:HGNC:17940 Ensembl:ENST00000558395
Uniprot:H0YN19
Length = 290
Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 16 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 74
Query: 259 NGQKFGKRPIAV---DWAVPKNIYSS 281
NGQ RP+ V D +VP Y S
Sbjct: 75 NGQFLFDRPMHVKMDDKSVPHEEYRS 100
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVV 433
N IF+ NLPFDL +++K++FS G V+
Sbjct: 263 NQIFVRNLPFDLTWQKLKEKFSQCGHVM 290
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 194 TQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251
TQ + +R N+ NE+ ++F VG + +++ + +T SKGFAF+ ++ + +A
Sbjct: 180 TQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEA 239
Query: 252 ESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ AI+K N F ++V+WA P N
Sbjct: 240 KRAIEKLNRHGFENLLLSVEWAKPSN 265
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 36 RSKVTQEVQAEDIEKTMDNKDGV 58
+ + T++V+AED K ++G+
Sbjct: 151 KDEETEDVKAEDPSKAAGRREGL 173
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 194 TQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251
TQ + +R N+ NE+ ++F VG + +++ + +T SKGFAF+ ++ + +A
Sbjct: 180 TQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEA 239
Query: 252 ESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ AI+K N F ++V+WA P N
Sbjct: 240 KRAIEKLNRHGFENLLLSVEWAKPSN 265
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 36 RSKVTQEVQAEDIEKTMDNKDGV 58
+ + T++V+AED K ++G+
Sbjct: 151 KDEETEDVKAEDPSKAAGRREGL 173
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 57/267 (21%), Positives = 111/267 (41%)
Query: 30 ASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATL-GIDL 88
+S ++ + +E + E+ +++ + S ++ S K + K K A +
Sbjct: 95 SSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEES 154
Query: 89 ADKEDCSQKQRVARTVIIGGLL-NAD---MAEEVHRLAGSIGTVCSVTYPLPKEELEQHG 144
++K+ +++ T+ +G L + D + +E + G IG V Y + +G
Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGA--RVIYERGTDRSRGYG 212
Query: 145 LAQ-EGCKMDASAVLYTTVKSACASVALLHQKEIK--GGTVWARQLGGEGSKTQKWKLII 201
E A+ K K G A++ G S+ L +
Sbjct: 213 YVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD-TLFL 271
Query: 202 RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 261
N+ F A + I ++F+ G V +V IP + +T KGF +V+F+ DA+ A+ G+
Sbjct: 272 GNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGE 331
Query: 262 KFGKRPIAVDWAVPKNIYSSG-GAAAG 287
RP+ +D++ P+ G G + G
Sbjct: 332 YIDNRPVRLDFSSPRPNNDGGRGGSRG 358
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 131 (51.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 53 (23.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 565 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEH 624
+P M +G + + AVV + S+Q PV++ + +G +S G V +H
Sbjct: 478 IPSGM--QGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDH 535
Query: 625 QHALVALRVLNNNPKTFG---PEHRPIVEFAVDNVQ 657
+ A + ++VL PE R + + +Q
Sbjct: 536 EKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQ 571
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 131 (51.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 53 (23.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 565 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEH 624
+P M +G + + AVV + S+Q PV++ + +G +S G V +H
Sbjct: 478 IPSGM--QGPSPINMGAVVPQGSRQVPVMQGTGLQGASIQGGSQPGGFSPGQNQVTPQDH 535
Query: 625 QHALVALRVLNNNPKTFG---PEHRPIVEFAVDNVQ 657
+ A + ++VL PE R + + +Q
Sbjct: 536 EKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQ 571
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 131 (51.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 565 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEH 624
+P M +G + + AVV + S+Q PV++ + +G +S G V +H
Sbjct: 498 IPSGM--QGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDH 555
Query: 625 QHALVALRVLNNNPKTFG---PEHRPIVEFAVDNVQ 657
+ A + ++VL PE R + + +Q
Sbjct: 556 EKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQ 591
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL I + + + +++ FS G + + + DT S+GF FV+F + +A++A+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 258 FNGQKFGKRPIAVDWAVPKNIYSSGG 283
N Q+F R I VD A + +GG
Sbjct: 63 MNNQEFDGRIIRVDKASERPAARNGG 88
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E S T K L + N+P+KA + +K++F+ G V+ V + + TG +GF FV +
Sbjct: 58 EASSTTK-TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ 116
Query: 250 DAESAIQKFNGQKFGKRPIAV 270
A++AI N +++ +R + V
Sbjct: 117 -AQTAIDALNEKEYMQRTLKV 136
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 190 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249
E S T K L + N+P+KA + +K++F+ G V+ V + + TG +GF FV +
Sbjct: 58 EASSTTK-TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ 116
Query: 250 DAESAIQKFNGQKFGKRPIAV 270
A++AI N +++ +R + V
Sbjct: 117 -AQTAIDALNEKEYMQRTLKV 136
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 169 VALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI 228
V+ + Q I + Q S + KL I + + +KD FS G V V I
Sbjct: 13 VSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRI 72
Query: 229 PHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
++ +G S+GF FV F + DA SA +G+ RP+ + +A+ +
Sbjct: 73 AYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALER 120
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 139 (54.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 65/252 (25%), Positives = 109/252 (43%)
Query: 36 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGK-TVKPRKAATLGIDLADKEDC 94
+ K Q+ AE EK D + GA + E K T AA+ ++ ++E+
Sbjct: 669 QKKEPQDTPAELTEK--DRMEPETGGAPMPGGETPEVEKPTEGGADAASAKVEEEEEEEE 726
Query: 95 SQKQRVARTVIIGGLLNADMAEEVHR-LAGSIGTV--CSVTYPLPKE-ELEQHGLAQEGC 150
+++ + + LN EE + + +G V CS++ K L G
Sbjct: 727 EEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEY 786
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIK---GGTVWARQLGGEGSKTQKW---KLIIRNI 204
K A +K V H+ E++ T A + +K K+++RNI
Sbjct: 787 KKPEQA--QKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNI 844
Query: 205 PFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQ 261
PF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A +
Sbjct: 845 PFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTH 904
Query: 262 KFGKRPIAVDWA 273
+G+R + ++WA
Sbjct: 905 LYGRR-LVLEWA 915
Score = 104 (41.7 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 178 KGGT-VW-ARQLGG---EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 232
K T W R LG E +L +RN+P+ + +++ +FS G + ++ P ++
Sbjct: 379 KNSTKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDS 438
Query: 233 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270
T KGFAFV F A A + +GQ F R + V
Sbjct: 439 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 476
Score = 89 (36.4 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 399 EGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
E E++L ++ +F+ NLP+ E++++ FS +G + + +TK+PKG F+ F
Sbjct: 394 EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTF 451
Score = 81 (33.6 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+LI++N+P K + +F+ G + + + D G + F F+ F + +A++A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQTALNH 61
Query: 258 FNGQKFGKRPIAVDW 272
FN I V++
Sbjct: 62 FNKSFIDTSRITVEF 76
Score = 80 (33.2 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
I + N+PF D+ E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 839 ILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 886
Score = 49 (22.3 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 735 PASDEAEVSLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGN-DARKSNSSEQ 787
P AE++ +D E +T G P + P+VE T+G DA + E+
Sbjct: 673 PQDTPAELTEKDRMEPETGGAPM-----PGGETPEVEKPTEGGADAASAKVEEE 721
Score = 48 (22.0 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 614 RGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTL 659
RG FV+F Q A A L ++ +G R ++E+A D+ TL
Sbjct: 879 RGFGFVDFFTKQDAKRAFNALCHSTHLYG--RRLVLEWA-DSEVTL 921
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 100 (40.3 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 30/107 (28%), Positives = 48/107 (44%)
Query: 171 LLHQKEIKGGT-VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 229
LL+ K++ G V Q G K + + ++N+ E+ +F G+ + I
Sbjct: 197 LLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIM 256
Query: 230 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
+ + G SKGF FV F DA A+ NG+ F + +W V K
Sbjct: 257 RDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDK----EWFVGK 298
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 399 EGEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
E D+ Q + +++ NL + ++++++ F+ FG + S V+ + +G+GF+ F
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITS-CKVMRDPSGVSRGSGFVAF 374
Score = 62 (26.9 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNK 55
+DA+RA+ N ++ GR I V +++ SL R+S V + ++++K++D+K
Sbjct: 97 QDASRALNELNFMALNGRAIRVMYSVRDPSL--RKSGVGN-IFIKNLDKSIDHK 147
Score = 41 (19.5 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 843 QQGSNKPDGGRQGS 856
QQ +P GGR+G+
Sbjct: 496 QQQQQRPGGGRRGA 509
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 134 (52.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 33/96 (34%), Positives = 56/96 (58%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAAAGVQN 290
NG++F R + VD A KN + S G AA V +
Sbjct: 82 NGREFSGRALRVDNAASEKNKEELKSLGPAAPVVDS 117
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 134 PLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK 193
P+ KE EQ GL+ + A V++ ++ GGT +
Sbjct: 151 PMQKELAEQLGLSTGEKEKAAEPEPAQPVQNKTGKYVPPSLRD--GGTRRGESMQPNRRA 208
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+ + N+ + +++++F P G + +Y+ + +TG SKGFAF+ F + DA
Sbjct: 209 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAAR 268
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKN 277
AI +G + + V+WA P N
Sbjct: 269 AIAGVSGFGYDHLILNVEWAKPSN 292
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 103 (41.3 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 157 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFK-----AKVN 211
V Y T +SA ++A ++ I G V+ + Q ++ N+ FK +
Sbjct: 143 VHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPD 202
Query: 212 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268
++K++ G + N+ I + D G SKGF F F A++ ++ NG+ F +PI
Sbjct: 203 QLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 70 (29.7 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 452
++I N+ +DN+++++ FS FG + S + + KG GF+
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFV 330
Score = 53 (23.7 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNK 55
DA RA++ N T + G+ + + SL R+S V V ++++K +D+K
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSL--RKSGVGN-VFIKNLDKGIDHK 112
Score = 37 (18.1 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 745 RDNGEGKTKGPKRNRKDRPD 764
R NG + G R RPD
Sbjct: 441 RQNGPRQNGGQPRQNGPRPD 460
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 99 (39.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 188 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV---GLVWNVYIPHNTDTGLSKGFAFVK 244
GG G ++ L + N+PF ++KD+F G V + H +G KG V
Sbjct: 215 GGPGGGGRQ--LYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADV-HTDASGRPKGSGIVA 271
Query: 245 FTCKRDAESAIQKFNGQKFGKRPIAV 270
F DA +AIQ+FNG + R + V
Sbjct: 272 FESPDDARNAIQQFNGYDWQGRTLEV 297
Score = 82 (33.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 398 TEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
T G E NTI++ NLP+ N+++ FS G+V + ++ R +GTG ++F
Sbjct: 374 TSG-GEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVER-AEIQYEPNGRSRGTGVVQF 428
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 120 (47.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 36/145 (24%), Positives = 66/145 (45%)
Query: 147 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 202
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 172 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 231
Query: 203 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ + +K+ F G + I + +TG SKGF FV F + DA++A + +
Sbjct: 232 GLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 288
Query: 263 FGKRPIAVDWAVPKNIYSSGGAAAG 287
+ +DWA PK GG G
Sbjct: 289 IDGNKVTLDWAKPKGEGGFGGRGGG 313
Score = 56 (24.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGA 62
DA + +E K GT + GR I + + + + R E KT+ + S
Sbjct: 95 DAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGES--KTLVLSNLAYSAT 152
Query: 63 EKHSSKLLESGKTVK 77
E+ ++ E +K
Sbjct: 153 EETLQEVFEKATFIK 167
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 134 (52.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 33/96 (34%), Positives = 56/96 (58%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAAAGVQN 290
NG++F R + VD A KN + S G AA V +
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAAPVVDS 113
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 126 (49.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 71/261 (27%), Positives = 109/261 (41%)
Query: 41 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESG---KTVKPRKAATLGIDLADKEDCSQK 97
Q + ++E D K G + ++ ++ ++ +T + ID D+E S
Sbjct: 49 QNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHL 108
Query: 98 QRV---ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMD 153
+ V IGGL D+ EE R L IG + V ++ + G A
Sbjct: 109 LSLPPHGSEVFIGGLPR-DVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA------- 160
Query: 154 ASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
V + T A ++ LH KE KG T+ S+T+ +L I NIP +E
Sbjct: 161 --FVAFKTKDVAQKAIEELHSKEFKGKTIRCSL-----SETKN-RLFIGNIPKNWTEDEF 212
Query: 214 KDMFSPVGL-VWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPI 268
+ + VG V N+ I T+T ++GFAFV + A+ + QK F G P
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAP- 271
Query: 269 AVDWAVPKNIYSSGGAAAGVQ 289
V WA PK+ AAA V+
Sbjct: 272 TVTWADPKSSPEHSAAAAQVK 292
Score = 53 (23.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFV 436
+++ N+P + E++K+ F GEV V
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIV 322
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 111 (44.1 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 29/81 (35%), Positives = 40/81 (49%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L + N+P++ K+ I D F VG V V + N G G FV+F +AE A+QK
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQKK 128
Query: 259 NGQKFGKRPIAVDWAVPKNIY 279
NG+ I +D A K Y
Sbjct: 129 NGECLDNNKIFLDVANKKATY 149
Score = 54 (24.1 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ ++ +F+ NL ++ F+ GEVVS +++ K G GF++F
Sbjct: 181 NSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHV-GYGFVEF 232
Score = 51 (23.0 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 575 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSR--GVAFVEFTEHQHALVALR 632
KK A +S +K +IK K + + + ++ H G FVEF A AL+
Sbjct: 435 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQ 494
Query: 633 VLN 635
+N
Sbjct: 495 KMN 497
Score = 49 (22.3 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 566 PKSMTEKGL-KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSR--GVAFVEFT 622
P+ + G+ KK A +SR ++ +I K + + ++ H + G AFVEF
Sbjct: 297 PEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFG 356
Query: 623 EHQHALVALRVLN 635
A +AL N
Sbjct: 357 SANEAKMALETKN 369
Score = 45 (20.9 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 512 YLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKK 544
YL +E L++E EG+ D + KK
Sbjct: 404 YLRRESLLIEENETEEGLDDTPALVEEFAVRKK 436
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ T+F+ +L + + F GEVV +L+ K G F++F
Sbjct: 307 KKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHV-GCAFVEF 355
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 97 (39.2 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 185 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 243
Query: 259 NGQKFGKRPIAV---DWAVP 275
NGQ RP+ V D +VP
Sbjct: 244 NGQFLFDRPMHVKMDDKSVP 263
Score = 84 (34.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 464 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 510
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ LP+ + E +K FS FG + VL +VTKR KG GF++F
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQF 52
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/100 (27%), Positives = 51/100 (51%)
Query: 172 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN 231
++ KE++ G + Q K + + I N+ + +I +FS G+ +V + +
Sbjct: 7 INDKELQSGILSPHQSWHNEYKDNAY-IYIGNLNRELTEGDILTVFSEYGVPVDVILSRD 65
Query: 232 TDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271
+TG S+GFA++K+ +R A+ NG K G R + +D
Sbjct: 66 ENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKID 105
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 131 (51.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 95 (38.5 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 400 GEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
GE L+ T +F+ N LD E++ FS FGE+ S V V+ +PKG GF+ F
Sbjct: 231 GESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAV-VMTDAQGKPKGFGFVAF 285
Score = 89 (36.4 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 171 LLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 230
++H + ++ +W+ Q + + I+N+ + D FS G + + +
Sbjct: 122 VIHGRPMR--IMWS-QRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVAT 178
Query: 231 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276
+ D G SKG+ FV F + A++AI+K NG + + V P+
Sbjct: 179 D-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 83 (34.3 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 215 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
+ FS G V ++ + + + LS G+A+V F DAE A+ N + RP+ + W+
Sbjct: 75 EKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS 133
Score = 42 (19.8 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 604 KGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 636
K VD S+G FV F + + A A+ +N+
Sbjct: 373 KVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 133 (51.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAA 285
NG++F R + VD A KN + S G AA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 133 (51.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAA 285
NG++F R + VD A KN + S G AA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 110 (43.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L I N+ ++ N+++ F G + +V+IP + + SKGF FV+F +RDAE A+ +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 259 NGQKFGKRPIAVDWA 273
+G+ R + V A
Sbjct: 81 DGKLVDGRELRVTLA 95
Score = 52 (23.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 755 PKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQ 793
P R+R+D PDR + + + ++ R+ S ++ RS+
Sbjct: 145 PSRDRRDSPDR-RDNSRSRSRSPPPREDGSPKERRSRSR 182
Score = 45 (20.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 735 PASDEAEV-SLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNS 784
P+ D + RDN +++ P P ++ ++++ +SNS
Sbjct: 145 PSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNS 195
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 110 (43.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
L I N+ ++ N+++ F G + +V+IP + + SKGF FV+F +RDAE A+ +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 259 NGQKFGKRPIAVDWA 273
+G+ R + V A
Sbjct: 81 DGKLVDGRELRVTLA 95
Score = 52 (23.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 755 PKRNRKDRPDRQKPDVETSTKGNDARKSNSSEQAHFRSQ 793
P R+R+D PDR + + + ++ R+ S ++ RS+
Sbjct: 145 PSRDRRDSPDR-RDNSRSRSRSPPPREDGSPKERRSRSR 182
Score = 45 (20.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 735 PASDEAEV-SLRDNGEGKTKGPKRNRKDRPDRQKPDVETSTKGNDARKSNS 784
P+ D + RDN +++ P P ++ ++++ +SNS
Sbjct: 145 PSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNS 195
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 133 (51.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAA 285
NG++F R + VD A KN + S G AA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 133 (51.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAA 285
NG++F R + VD A KN + S G AA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 133 (51.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN---IYSSGGAA 285
NG++F R + VD A KN + S G AA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 109 (43.4 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 157 VLYTTVKSACASVA-----LLHQKEIKGGTVWA---RQLGGEGSKTQKWKLIIRNIPFKA 208
V Y T ++A A++ LL+ +E+ G + R+ E K + ++NI
Sbjct: 185 VHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNY 244
Query: 209 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268
+ +FSP G + ++Y+ + D G SKGF FV F A A+++ N ++ + I
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKI 303
Query: 269 AVDWAVPK 276
V A K
Sbjct: 304 YVGRAQKK 311
Score = 70 (29.7 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+F+ NL +D+E++++ F FG + S ++ + K KG GF+ F
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS-KGFGFVCF 383
Score = 42 (19.8 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 767 KPDVETSTKGNDARKSNSSEQAHFRSQKRKLGYQTEGLVG 806
KP + D R+S +Q R+Q R GL G
Sbjct: 404 KPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPG 443
Score = 41 (19.5 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNK 55
ED +A+E N + GR + + S RRS + +++ +DNK
Sbjct: 104 EDGEKAIEELNYNPIEGRPCRIMWSQRDPSA--RRSG-DGNIFIKNLHPAIDNK 154
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 115 (45.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 35/136 (25%), Positives = 63/136 (46%)
Query: 135 LPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKT 194
LPK EQH L + K + ++K L HQ++ Q+ + +
Sbjct: 74 LPKLSSEQHDLVSKAKKY----AMEQSIKMVLMKQTLAHQQQQLA--TQRTQVQRQQALA 127
Query: 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254
++ + +I F+ K + I+ F+P G + ++ + + T KGFAFV++ A+ A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 255 IQKFNGQKFGKRPIAV 270
+++ NG G R I V
Sbjct: 188 LEQMNGALMGGRNIKV 203
Score = 66 (28.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
+ + E + N I++ ++ DL E++K F AFG ++ KG GF+++
Sbjct: 218 EVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEY 275
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 184 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243
A+Q G S L I N+ F A + + ++F G V + +P + DT KGF +V
Sbjct: 258 AKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
+F+ +A++A++ NG+ RP +D++ P++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 89 (36.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272
+K F +G V + TG S+G+ +V F K AE A+++ G++ RPI +D
Sbjct: 184 LKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDM 243
Query: 273 AVPK 276
+ K
Sbjct: 244 STGK 247
Score = 88 (36.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
+T+FI NL F+ + + + F +G V+S VP H T++PKG G+++F
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPT-HPDTQQPKGFGYVQF 318
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 184 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243
A+Q G S L I N+ F A + + ++F G V + +P + DT KGF +V
Sbjct: 258 AKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
+F+ +A++A++ NG+ RP +D++ P++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 89 (36.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272
+K F +G V + TG S+G+ +V F K AE A+++ G++ RPI +D
Sbjct: 184 LKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDM 243
Query: 273 AVPK 276
+ K
Sbjct: 244 STGK 247
Score = 88 (36.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
+T+FI NL F+ + + + F +G V+S VP H T++PKG G+++F
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPT-HPDTQQPKGFGYVQF 318
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 34/108 (31%), Positives = 56/108 (51%)
Query: 183 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 242
WA + GGEG ++ + N+P + +++D+F G + + + + GL FAF
Sbjct: 4 WADERGGEGDG----RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRH--GLVP-FAF 56
Query: 243 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQN 290
V+F RDAE AI NG +G+ + V++ P+ S GG G +N
Sbjct: 57 VRFEDPRDAEDAIYGRNGYDYGQCRLRVEF--PRTYGSRGGWPRGGRN 102
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 131 (51.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 97 (39.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 253 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 311
Query: 259 NGQKFGKRPIAV---DWAVP 275
NGQ RP+ V D +VP
Sbjct: 312 NGQFLFDRPMHVKMDDKSVP 331
Score = 84 (34.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 539 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 585
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 112 (44.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 254 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 291
++ NG+ R I VD A K+ + G A G +
Sbjct: 63 VMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFGAHGR 99
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 131 (51.2 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 90 (36.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 217 FSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIAVDWA 273
FS G V +V I N TG S+ + FV+F AE +Q +NG ++P ++WA
Sbjct: 104 FSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWA 162
Score = 87 (35.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 454
Q++G D TIF+ L ++ +EE++Q F+ FGEVVS +P KG GF++F
Sbjct: 287 QSDG-DSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-------GKGCGFVQF 337
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 107 (42.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 157 VLYTTVK-SACASVALLHQKEIKGGTVW--ARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
V+ TT + SA + + LH + T A+Q+ + ++L + N+ +
Sbjct: 13 VVNTTGRVSAKKAASYLHSMQNSSTTKINPAKQVTAPNWNPKHFRLFVGNLGPDGNDELL 72
Query: 214 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
K+ FS + V++P + T +KGF FV F D A Q+ NG+ G+ P+ + A
Sbjct: 73 KEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLKRA 132
Query: 274 ---VPK 276
VPK
Sbjct: 133 ESSVPK 138
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 107 (42.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 157 VLYTTVK-SACASVALLHQKEIKGGTVW--ARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
V+ TT + SA + + LH + T A+Q+ + ++L + N+ +
Sbjct: 13 VVNTTGRVSAKKAASYLHSMQNSSTTKINPAKQVTAPNWNPKHFRLFVGNLGPDGNDELL 72
Query: 214 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
K+ FS + V++P + T +KGF FV F D A Q+ NG+ G+ P+ + A
Sbjct: 73 KEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLKRA 132
Query: 274 ---VPK 276
VPK
Sbjct: 133 ESSVPK 138
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 92 (37.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 30/132 (22%), Positives = 60/132 (45%)
Query: 147 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206
QE + + ++KS + HQ++ A Q + + ++ + +I +
Sbjct: 63 QEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQR--QRALAIMCRVYVGSIYY 120
Query: 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266
+ + I+ F+P G + ++ + ++ T KGFAFV++ A+ A+++ N G R
Sbjct: 121 ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 180
Query: 267 PIAVDWAVPKNI 278
I V P NI
Sbjct: 181 NIKV--GRPSNI 190
Score = 81 (33.6 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
N I++ ++ DL ++++K F AFG++ S T + KG GF+++
Sbjct: 208 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 256
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 123 (48.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 33/108 (30%), Positives = 55/108 (50%)
Query: 183 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 242
WA + GGEG ++ + N+P + +++D+F G + + + + GL FAF
Sbjct: 5 WADERGGEGDG----RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRH--GLVP-FAF 57
Query: 243 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQN 290
V+F RDAE AI NG +G+ + V++ P+ GG G +N
Sbjct: 58 VRFEDPRDAEDAIYGRNGYDYGQCRLRVEF--PRTYGGRGGWPRGARN 103
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 98 (39.6 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 215 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
+MFSP+G + ++ + + T S G+A++ F DAE A+ N + +PI + W+
Sbjct: 29 EMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWS 87
Score = 74 (31.1 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
I++ NL D+D + ++ FS FG+ S V V+ + +G GF+ F
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQS-VKVMRDSNGQSRGFGFINF 238
Score = 70 (29.7 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
IFI NL +DN+ + FS FG ++S V ++ R G GF+ F
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHF 145
Score = 54 (24.1 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 600 QSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 635
QS+K + D+ SRG F+ F +H+ A A+ +N
Sbjct: 218 QSVKVMR-DSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Score = 40 (19.1 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 602 LKKGKVDTKH-YSRGVAFVEFTEHQHALVALRVLN 635
+ KV T+ +S+G FV F+ + A A+ +N
Sbjct: 320 ITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMN 354
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 127 (49.8 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 159 YTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWK-LIIRNIPFKAKVNEIKDMF 217
+ + + A ++ ++ EI+G T+ +L G S++Q K L ++ + +K+ F
Sbjct: 531 FASFEDAKEALNSCNKMEIEGRTI-RLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESF 589
Query: 218 SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
G V I + +TG SKGF FV F + DA++A + + + +DWA PK
Sbjct: 590 E--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 646
Query: 278 IYSSGGAAAG 287
GG G
Sbjct: 647 EGGFGGRGGG 656
Score = 53 (23.7 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 3 DANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 40
DA + +E K G + GR + + + + ++R K +
Sbjct: 443 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTS 480
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 131 (51.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 112 (44.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+L +RN+ ++ K +E++ +FSP G + +++ +T SKGFA+V++ A A +
Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355
Query: 258 FNGQKFGKRPIAVDWAVPKNIY 279
+G+ F R + + A K Y
Sbjct: 356 LDGKIFQGRLLHILPASQKKTY 377
Score = 70 (29.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
I I NLPF ++V+ F A+G++ S V V + + +G GF F
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRS-VRVPKKFDRSARGFGFADF 744
Score = 53 (23.7 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 399 EGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTG 450
EG++E+ T +FI NL F N+ + AF + FV + PK G
Sbjct: 583 EGDEEVMATATLFIKNLNFSTTNQSL---IEAFRPLDGFVSARIKTKPDPKNPG 633
Score = 51 (23.0 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 28/96 (29%), Positives = 42/96 (43%)
Query: 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGV 616
RT+++I NLP T+K ++ L A S + P KF +S +RG
Sbjct: 696 RTKIIIKNLPFQATKKDVRSL-FGAYGQLRSVRVPK----KFDRS-----------ARGF 739
Query: 617 AFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652
F +F + A A+ L N G R ++EFA
Sbjct: 740 GFADFVSAREAENAMDALKNT-HLLG--RRLVLEFA 772
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 131 (51.2 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 110 (43.8 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN----VYIPHNTDTGLSKGFAFVKFTC 247
SK ++ + + ++ VNE D++S +N I + T +S+G+ FV+FT
Sbjct: 181 SKASEYSIFVGDL--SPNVNEF-DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Query: 248 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
+ D +SA+ + GQ G RPI V A PK+
Sbjct: 238 ENDQKSALAEMQGQICGDRPIRVGLATPKS 267
Score = 66 (28.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
D +T+F+ L + EE+K F FGE+V +V + KG GF++F
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIV-YVKI-----PPGKGCGFVQF 345
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 98 (39.6 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
LI+ +P E+ +F +G + I + TG S G+AFV FT + D++ AI+
Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186
Query: 259 NGQKFGKRPIAVDWAVP 275
NG + + V +A P
Sbjct: 187 NGITVRNKRLKVSYARP 203
Score = 75 (31.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 400 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
GE +++ NLP + ++++ F +G +V + ++T RP+G F+++
Sbjct: 205 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 259
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 70/305 (22%), Positives = 127/305 (41%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVTQ----EVQAED 47
ED +A+E+ G V G +I ++ + S + R + KVTQ EV +
Sbjct: 280 EDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA 338
Query: 48 IEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVII 106
+E + +KDG G K ++ KT++ ++ ID ++ SQ R +
Sbjct: 339 VEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQSQDHRGGKNSTW 396
Query: 107 GGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSAC 166
G + + A T+ V ++ Q+ Q G + + + + + A
Sbjct: 397 SGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYAFIEFASFEDAK 452
Query: 167 ASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVNEIKDMFSPVGL 222
++ +++EI+G + G GS ++Q K L ++ + +K+ F G
Sbjct: 453 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 510
Query: 223 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 282
+ I + +TG SKGF FV F + DA++A + + + +DWA PK G
Sbjct: 511 I-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 569
Query: 283 GAAAG 287
G G
Sbjct: 570 GRGGG 574
>FB|FBgn0038796 [details] [associations]
symbol:CG10881 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:NP_650887.1 ProteinModelPortal:Q9VDM6 SMR:Q9VDM6
STRING:Q9VDM6 PaxDb:Q9VDM6 PRIDE:Q9VDM6 EnsemblMetazoa:FBtr0083885
GeneID:42422 KEGG:dme:Dmel_CG10881 UCSC:CG10881-RA
FlyBase:FBgn0038796 InParanoid:Q9VDM6 OMA:LILCVEW OrthoDB:EOG476HG4
PhylomeDB:Q9VDM6 GenomeRNAi:42422 NextBio:828693 Bgee:Q9VDM6
Uniprot:Q9VDM6
Length = 273
Score = 125 (49.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 34/138 (24%), Positives = 63/138 (45%)
Query: 148 EGCKMDASAVLYTTVKSACASVALLHQKEIK--------GGTVWARQLGGEGSKTQKWKL 199
+G MD+ V+ T +A A+ K K GG + + G G
Sbjct: 135 KGTSMDSKTVMETKANAAAAAAISDPSKTGKYVPPFMKDGGGISGSKNWGRGRDRDDSSA 194
Query: 200 I-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ I N+ +++++ +G +Y+ ++GL KGFA+V F ++DA +AI+
Sbjct: 195 VRISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKFRQDAAAAIEVL 254
Query: 259 NGQKFGKRPIAVDWAVPK 276
NG + + V+W+ P+
Sbjct: 255 NGHGYDHLILCVEWSKPQ 272
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 70/305 (22%), Positives = 127/305 (41%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVTQ----EVQAED 47
ED +A+E+ G V G +I ++ + S + R + KVTQ EV +
Sbjct: 285 EDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA 343
Query: 48 IEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVII 106
+E + +KDG G K ++ KT++ ++ ID ++ SQ R +
Sbjct: 344 VEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQSQDHRGGKNSTW 401
Query: 107 GGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSAC 166
G + + A T+ V ++ Q+ Q G + + + + + A
Sbjct: 402 SGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYAFIEFASFEDAK 457
Query: 167 ASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVNEIKDMFSPVGL 222
++ +++EI+G + G GS ++Q K L ++ + +K+ F G
Sbjct: 458 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515
Query: 223 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 282
+ I + +TG SKGF FV F + DA++A + + + +DWA PK G
Sbjct: 516 I-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 574
Query: 283 GAAAG 287
G G
Sbjct: 575 GRGGG 579
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 70/305 (22%), Positives = 127/305 (41%)
Query: 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVTQ----EVQAED 47
ED +A+E+ G V G +I ++ + S + R + KVTQ EV +
Sbjct: 285 EDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA 343
Query: 48 IEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVII 106
+E + +KDG G K ++ KT++ ++ ID ++ SQ R +
Sbjct: 344 VEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQSQDHRGGKNSTW 401
Query: 107 GGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSAC 166
G + + A T+ V ++ Q+ Q G + + + + + A
Sbjct: 402 SGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYAFIEFASFEDAK 457
Query: 167 ASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVNEIKDMFSPVGL 222
++ +++EI+G + G GS ++Q K L ++ + +K+ F G
Sbjct: 458 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515
Query: 223 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 282
+ I + +TG SKGF FV F + DA++A + + + +DWA PK G
Sbjct: 516 I-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 574
Query: 283 GAAAG 287
G G
Sbjct: 575 GRGGG 579
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 102 (41.0 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 42/169 (24%), Positives = 76/169 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASA 156
K A + +G + +++ L G + +T + K+ L GL +GC
Sbjct: 2 KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELT--VLKDRLT--GL-HKGCAF---- 52
Query: 157 VLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
+ Y SA + + LH QK + G + + EG + KL + + + ++
Sbjct: 53 LTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDV 111
Query: 214 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ +F P G + + + D G SKG AFVKF + +A++AIQ +G +
Sbjct: 112 RRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHGSR 159
Score = 73 (30.8 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + + E+ Q F FG VVS + + T + K GF+ F
Sbjct: 335 QREGPEGCN--LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 390
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 90 (36.7 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 149 GCKMDASAVLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIP 205
G + + Y SA + + LH QK + G + + E S+ + KL + +
Sbjct: 122 GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLG 180
Query: 206 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ +++ MF P G + + D G SKG AFVKF +A++AI + +
Sbjct: 181 KQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLHSSR 236
Score = 83 (34.3 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG D IFI +LP + + E+ Q F FG V+S + + T + K GF+ F
Sbjct: 447 QREGPDGCN--IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 502
Score = 47 (21.6 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 14 TSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKD 56
T V G+++GV + R + S ++ I + ++ KD
Sbjct: 57 TDVRGKEVGVGRGVWRGEVFVEESAAGEQSSGTQIPRHLEEKD 99
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 118 (46.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 40/159 (25%), Positives = 71/159 (44%)
Query: 123 GSIGTVCSVTYPLPKEELEQHGLAQEG--CKMDASA---VLYTTVKSACASVALLHQKEI 177
G+I T VT PL +E G + + D S+ V Y +SA ++ L+ + +
Sbjct: 64 GNIHT--QVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHL 121
Query: 178 KGGTV---WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 234
G + WA G + + + + ++ + + FS + + + T
Sbjct: 122 FGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKT 181
Query: 235 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273
G S+GF FV F ++DA++AI + NG+ R I +WA
Sbjct: 182 GRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 56 (24.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 362 KGNKEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEE 421
KG D DK ++ V ++ +T + T+++ NL ++ +
Sbjct: 222 KGATSGD-DKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLD 280
Query: 422 VKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 454
+ + F A G V+ +V +R KG GF+++
Sbjct: 281 LHRYFHALG-----AGVIEEVRVQRDKGFGFVRY 309
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 131 (51.2 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 259 NGQKFGKRPIAVDWAVP-KN 277
NG++F R + VD A KN
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 106 (42.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 29/94 (30%), Positives = 44/94 (46%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
KL + + F ++ +FS G + V + + +T S+GF FV F DA+ A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 258 FNGQKFGKRPIAVDWAVPKNIYSS----GGAAAG 287
NG+ R I VD A + S GG+A G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+L + ++ ++A ++++ +FS G V +V+I + +TG SKG +V+ + +A+ AI+
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 258 FNGQKFGKRPIAVDWAVPK 276
+G R I V A P+
Sbjct: 64 LDGALLRNRVITVSVARPQ 82
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257
+L + ++ ++A ++++ +FS G V +V+I + +TG SKG +V+ + +A+ AI+
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 258 FNGQKFGKRPIAVDWAVPK 276
+G R I V A P+
Sbjct: 64 LDGALLRNRVITVSVARPQ 82
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 107 (42.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 42/124 (33%), Positives = 59/124 (47%)
Query: 157 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK----TQKWKLIIRNIPFKAKVNE 212
V + T K+A + LH +I G Q+ S+ + KL I I K N+
Sbjct: 64 VTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNEND 123
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN-GQKF-G-KRPIA 269
I+ MFSP G + I D GLS+G AFV FT + A++AI+ + Q G PI
Sbjct: 124 IRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 182
Query: 270 VDWA 273
V +A
Sbjct: 183 VKFA 186
Score = 69 (29.3 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + ++++ Q F FG VVS + + T K GF+ +
Sbjct: 393 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 448
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 107 (42.7 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 42/124 (33%), Positives = 59/124 (47%)
Query: 157 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK----TQKWKLIIRNIPFKAKVNE 212
V + T K+A + LH +I G Q+ S+ + KL I I K N+
Sbjct: 64 VTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNEND 123
Query: 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN-GQKF-G-KRPIA 269
I+ MFSP G + I D GLS+G AFV FT + A++AI+ + Q G PI
Sbjct: 124 IRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIV 182
Query: 270 VDWA 273
V +A
Sbjct: 183 VKFA 186
Score = 69 (29.3 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + ++++ Q F FG VVS + + T K GF+ +
Sbjct: 397 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 452
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 128 (50.1 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 38/181 (20%), Positives = 80/181 (44%)
Query: 92 EDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ-EGC 150
++ S ++R ARTV L ++ ++G V V + G+A E C
Sbjct: 157 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 216
Query: 151 KMDASAVLYTTVKSACASVALLHQ-KEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAK 209
++ + + V ++ Q + + + A + + +L + ++ F
Sbjct: 217 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSGPMRLYVGSLHFNIT 276
Query: 210 VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269
+ ++ +F P G + N+ + ++DTG SKG+ F+ F+ A A+++ NG + RP+
Sbjct: 277 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 336
Query: 270 V 270
V
Sbjct: 337 V 337
Score = 45 (20.9 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 33 EQRRSKVTQEVQAEDIEKTMDNKDGVISGAEK--HSSKLLESGKTVKPR 79
EQ+R +V ++ A TM G SG+ SSK S K R
Sbjct: 24 EQQRKEVKKDGPANTSTSTMSTSSGGTSGSSAGGDSSKKKRSRSHSKSR 72
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 113 (44.8 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 48/190 (25%), Positives = 79/190 (41%)
Query: 101 ARTVIIGGLLNADMA-EEVHRLAGSIGTV--CSVTYP-------LPKEELEQHGLAQEGC 150
+RT +I L M EE+ L SIG + C + LP + Q+G
Sbjct: 24 SRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQ 83
Query: 151 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 210
+ V Y + A +V L+ ++ + + L + +P
Sbjct: 84 SLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQ 143
Query: 211 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPI 268
+++ MF+ G + I + +GLSKG F++F + +AE AIQ+ NG+ K PI
Sbjct: 144 PDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPI 203
Query: 269 AVDWAV-PKN 277
V +A P N
Sbjct: 204 TVKFANNPSN 213
Score = 58 (25.5 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 452
IF+ NL + + + Q F FG V S V V+ + T + KG GF+
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQS-VKVIRDLQTSKCKGFGFV 319
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 89 (36.4 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q + + N +FI LPF +EE+KQ F+ +G V+S + + T++ K GF+ +
Sbjct: 278 QQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSY 335
Score = 84 (34.6 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 40/176 (22%), Positives = 79/176 (44%)
Query: 103 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA--QEGCKMDASAVLYT 160
TV +G + ++ E V ++ G + +T K G A K +A L T
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78
Query: 161 TVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 220
T +S + ++K E K ++ KL I + + ++I+ +F
Sbjct: 79 TNESGTFLENMNKPLQVKYSD-------NEIEKMER-KLFIGMLGTSDE-DQIRILFGNY 129
Query: 221 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKR-PIAVDWA 273
G++ ++ I D G KG+ F+K++ + ++E+A+++ +G+ G PI V +A
Sbjct: 130 GIIEDLNIVREKD-GKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFA 184
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 125 (49.1 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 134 PLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK-GGTVWARQLGGEGS 192
P+ KE EQ GL+ G K A ++ + ++ GG+ +
Sbjct: 164 PMQKELAEQLGLST-GDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRR 222
Query: 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 252
+ + N+ + +++++F P G + +Y+ + TG SKGFAF+ F + DA
Sbjct: 223 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 282
Query: 253 SAIQKFNGQKFGKRPIAVDWAVP 275
AI +G + + V+WA P
Sbjct: 283 RAIAGVSGFGYDHLILNVEWAKP 305
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 107 (42.7 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 252
+T LII +P E+ ++FS G + I + TG S G+ FV + + D+E
Sbjct: 89 RTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSE 148
Query: 253 SAIQKFNGQKFGKRPIAVDWAVP 275
AIQK NG + + V +A P
Sbjct: 149 DAIQKLNGFYVRNKRLKVSYARP 171
Score = 68 (29.0 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 13/56 (23%), Positives = 35/56 (62%)
Query: 400 GEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
G +++T +++ NL +++++ + + FS +G +V + ++T RP+G F+++
Sbjct: 172 GGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRY 227
Score = 59 (25.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 614 RGVAFVEFTEHQHALVALRVLNN 636
RGVAFV + + + A A++ LNN
Sbjct: 220 RGVAFVRYNKREEAQEAIKALNN 242
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 134 PLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK-GGTVWARQLGGEGS 192
P+ KE EQ GL+ G K A ++ + ++ GG+ +
Sbjct: 166 PMQKELAEQLGLST-GDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRR 224
Query: 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 252
+ + N+ + +++++F P G + +Y+ + TG SKGFAF+ F + DA
Sbjct: 225 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 284
Query: 253 SAIQKFNGQKFGKRPIAVDWAVP 275
AI +G + + V+WA P
Sbjct: 285 RAIAGVSGFGYDHLILNVEWAKP 307
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 102 (41.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 42/169 (24%), Positives = 76/169 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASA 156
K A + +G + +++ L G + +T + K+ L GL +GC
Sbjct: 41 KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELT--VLKDRLT--GL-HKGCAF---- 91
Query: 157 VLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
+ Y SA + + LH QK + G + + EG + KL + + + ++
Sbjct: 92 LTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDV 150
Query: 214 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ +F P G + + + D G SKG AFVKF + +A++AIQ +G +
Sbjct: 151 RRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHGSR 198
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + + E+ Q F FG VVS + + T + K GF+ F
Sbjct: 390 QREGPEGCN--LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 102 (41.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 42/169 (24%), Positives = 76/169 (44%)
Query: 97 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASA 156
K A + +G + +++ L G + +T + K+ L GL +GC
Sbjct: 41 KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELT--VLKDRLT--GL-HKGCAF---- 91
Query: 157 VLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI 213
+ Y SA + + LH QK + G + + EG + KL + + + ++
Sbjct: 92 LTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDV 150
Query: 214 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262
+ +F P G + + + D G SKG AFVKF + +A++AIQ +G +
Sbjct: 151 RRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHGSR 198
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 397 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
Q EG + +FI +LP + + E+ Q F FG VVS + + T + K GF+ F
Sbjct: 390 QREGPEGCN--LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 90 (36.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 454
IF+ + D EEVK FS FG V V ++ Q TKR +G GF+ F
Sbjct: 293 IFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTF 339
Score = 88 (36.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 188 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF-- 245
GG GS KL + + ++ +++K+ F+ G V +V I + T S+GF F+ F
Sbjct: 194 GGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQE 253
Query: 246 --TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277
T ++ + I +G+K + A PKN
Sbjct: 254 PCTVEKVLKVPIHTLDGKKIDPKH-----ATPKN 282
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 143 (55.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 193 KTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRD 250
K QK K+++RNIPF+A V EI+++FS G + V +P TG +GF FV F K+D
Sbjct: 814 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 873
Query: 251 AESAIQKF--NGQKFGKRPIAVDWA 273
A+ A + +G+R + ++WA
Sbjct: 874 AKKAFNALCHSTHLYGRR-LVLEWA 897
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 22 GVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRK 80
G+ + + ++R+SK QE + E + N+ + H+ KL + V +K
Sbjct: 253 GITENIDTHTKKRRKSK-PQEAEQETPAEKQKNQVSSAEASTPHTVKLRGAPLNVTEQK 310
WARNING: HSPs involving 176 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 865 737 0.00088 121 3 11 23 0.47 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 426
No. of states in DFA: 617 (66 KB)
Total size of DFA: 347 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.78u 0.11s 62.89t Elapsed: 00:00:03
Total cpu time: 62.81u 0.11s 62.92t Elapsed: 00:00:03
Start: Tue May 21 16:44:14 2013 End: Tue May 21 16:44:17 2013
WARNINGS ISSUED: 2