Query 002920
Match_columns 865
No_of_seqs 581 out of 3765
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 13:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0127 Nucleolar protein fibr 100.0 2E-66 4.2E-71 558.9 38.5 506 101-671 5-543 (678)
2 TIGR01628 PABP-1234 polyadenyl 100.0 6.7E-51 1.4E-55 483.2 43.1 369 103-671 2-376 (562)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-45 2.5E-50 428.2 44.8 448 100-653 1-478 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-42 2.9E-47 389.1 37.8 344 101-491 3-350 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-42 3.2E-47 411.9 32.1 307 2-494 53-368 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-41 2.2E-46 382.0 33.6 313 195-653 2-347 (352)
7 KOG0123 Polyadenylate-binding 100.0 3.1E-40 6.7E-45 364.6 30.6 359 103-671 3-361 (369)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-37 2.3E-42 358.7 33.3 301 100-580 57-364 (578)
9 KOG0145 RNA-binding protein EL 100.0 1.1E-37 2.4E-42 309.1 25.1 302 192-652 37-355 (360)
10 KOG0145 RNA-binding protein EL 100.0 6.2E-37 1.3E-41 303.7 26.4 314 101-490 41-358 (360)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 6.1E-36 1.3E-40 344.2 30.9 279 161-654 18-306 (578)
12 TIGR01622 SF-CC1 splicing fact 100.0 5.4E-35 1.2E-39 339.0 36.7 337 96-489 84-447 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1E-34 2.2E-39 336.8 38.0 325 1-490 48-480 (481)
14 TIGR01622 SF-CC1 splicing fact 100.0 5E-35 1.1E-39 339.3 33.0 331 194-655 87-448 (457)
15 KOG0117 Heterogeneous nuclear 100.0 1.2E-35 2.6E-40 315.4 25.0 249 99-493 81-334 (506)
16 KOG0123 Polyadenylate-binding 100.0 3.1E-36 6.7E-41 332.8 21.3 294 2-490 48-349 (369)
17 KOG0117 Heterogeneous nuclear 100.0 2.3E-34 5E-39 305.6 27.9 293 159-666 41-342 (506)
18 TIGR01645 half-pint poly-U bin 100.0 1.6E-33 3.5E-38 324.3 36.3 170 99-277 105-285 (612)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.1E-34 1.1E-38 335.4 32.8 277 96-488 170-500 (509)
20 KOG0127 Nucleolar protein fibr 100.0 1.6E-34 3.4E-39 312.6 25.7 338 197-653 6-376 (678)
21 KOG0110 RNA-binding protein (R 100.0 8.9E-35 1.9E-39 325.0 24.1 381 99-665 225-703 (725)
22 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.2E-32 9.1E-37 319.2 32.2 310 192-655 171-502 (509)
23 KOG0144 RNA-binding protein CU 100.0 2.2E-32 4.9E-37 289.0 23.9 378 99-491 32-505 (510)
24 KOG0148 Apoptosis-promoting RN 100.0 3.6E-32 7.8E-37 272.3 20.5 233 99-490 4-238 (321)
25 KOG0148 Apoptosis-promoting RN 100.0 1.9E-30 4.1E-35 260.0 19.0 176 406-656 63-239 (321)
26 KOG0144 RNA-binding protein CU 100.0 4.1E-30 8.8E-35 272.0 21.9 173 194-494 32-210 (510)
27 TIGR01659 sex-lethal sex-letha 100.0 1.9E-28 4.1E-33 269.8 21.6 171 192-490 103-275 (346)
28 TIGR01659 sex-lethal sex-letha 100.0 2.8E-28 6.1E-33 268.4 21.0 171 98-277 104-276 (346)
29 TIGR01645 half-pint poly-U bin 100.0 3.5E-27 7.7E-32 272.0 22.2 180 195-491 106-285 (612)
30 KOG0147 Transcriptional coacti 99.9 4.7E-27 1E-31 257.2 17.7 330 94-488 172-526 (549)
31 KOG0124 Polypyrimidine tract-b 99.9 7.7E-26 1.7E-30 234.0 23.5 178 196-490 113-290 (544)
32 KOG0147 Transcriptional coacti 99.9 2.1E-27 4.5E-32 260.1 11.5 328 195-653 178-526 (549)
33 KOG1190 Polypyrimidine tract-b 99.9 9.2E-25 2E-29 230.0 29.1 416 99-653 26-489 (492)
34 KOG0110 RNA-binding protein (R 99.9 1.1E-25 2.3E-30 252.5 18.3 265 94-492 378-695 (725)
35 KOG4212 RNA-binding protein hn 99.9 2.3E-24 5E-29 227.9 25.3 242 99-486 42-290 (608)
36 KOG0124 Polypyrimidine tract-b 99.9 4.2E-24 9.1E-29 221.2 24.3 168 101-277 113-291 (544)
37 KOG0131 Splicing factor 3b, su 99.9 1.8E-24 3.9E-29 206.0 12.3 172 193-491 6-178 (203)
38 KOG0131 Splicing factor 3b, su 99.9 4.2E-24 9.2E-29 203.5 12.5 168 101-277 9-178 (203)
39 KOG1456 Heterogeneous nuclear 99.9 1.6E-20 3.5E-25 195.8 37.1 443 95-653 25-487 (494)
40 KOG0146 RNA-binding protein ET 99.9 1.2E-21 2.6E-26 195.9 14.7 279 179-491 2-366 (371)
41 KOG4211 Splicing factor hnRNP- 99.9 1.2E-19 2.5E-24 197.0 27.1 458 97-636 6-494 (510)
42 KOG1190 Polypyrimidine tract-b 99.8 1.1E-18 2.4E-23 184.4 25.5 341 1-489 71-490 (492)
43 KOG0109 RNA-binding protein LA 99.8 2.3E-20 5E-25 189.5 10.9 149 197-491 3-151 (346)
44 KOG0109 RNA-binding protein LA 99.8 3.2E-20 7E-25 188.5 10.8 147 103-276 4-150 (346)
45 KOG4212 RNA-binding protein hn 99.7 8.6E-17 1.9E-21 170.9 21.0 195 2-273 97-291 (608)
46 KOG4211 Splicing factor hnRNP- 99.7 1.9E-16 4E-21 172.3 22.3 300 194-636 8-343 (510)
47 KOG0120 Splicing factor U2AF, 99.7 2.2E-17 4.7E-22 184.6 15.6 274 95-488 169-490 (500)
48 KOG4205 RNA-binding protein mu 99.7 1E-17 2.2E-22 179.5 11.6 175 195-493 5-179 (311)
49 KOG0120 Splicing factor U2AF, 99.7 2.9E-17 6.3E-22 183.7 15.7 303 193-655 172-492 (500)
50 KOG4205 RNA-binding protein mu 99.7 8.3E-18 1.8E-22 180.0 10.9 169 100-279 5-179 (311)
51 KOG0146 RNA-binding protein ET 99.7 3.7E-17 7.9E-22 164.0 12.2 172 96-277 14-366 (371)
52 KOG4206 Spliceosomal protein s 99.7 2.6E-15 5.6E-20 149.7 18.1 208 195-488 8-220 (221)
53 KOG4206 Spliceosomal protein s 99.7 3E-15 6.5E-20 149.2 16.8 202 406-652 10-219 (221)
54 KOG0105 Alternative splicing f 99.6 8E-15 1.7E-19 140.1 14.6 155 99-272 4-186 (241)
55 PLN03134 glycine-rich RNA-bind 99.6 7.5E-15 1.6E-19 142.4 11.8 83 404-491 33-115 (144)
56 KOG1548 Transcription elongati 99.6 3.5E-14 7.6E-19 148.3 16.1 203 402-648 131-345 (382)
57 PLN03134 glycine-rich RNA-bind 99.6 1.6E-14 3.4E-19 140.2 11.6 85 193-277 31-115 (144)
58 KOG1365 RNA-binding protein Fu 99.5 1.5E-13 3.2E-18 144.6 17.6 276 99-488 58-360 (508)
59 KOG1456 Heterogeneous nuclear 99.5 7.8E-13 1.7E-17 138.8 22.0 301 192-653 27-361 (494)
60 KOG1548 Transcription elongati 99.5 3.9E-13 8.5E-18 140.5 18.3 200 194-490 132-352 (382)
61 KOG1457 RNA binding protein (c 99.5 4.3E-13 9.3E-18 132.1 17.0 209 404-637 33-271 (284)
62 KOG0105 Alternative splicing f 99.5 3.2E-13 6.9E-18 129.3 15.6 169 404-637 5-173 (241)
63 KOG1457 RNA binding protein (c 99.5 2E-12 4.3E-17 127.5 17.3 85 194-278 32-120 (284)
64 KOG1365 RNA-binding protein Fu 99.4 2.3E-12 4.9E-17 135.8 16.2 284 195-637 59-347 (508)
65 PF00076 RRM_1: RNA recognitio 99.4 6.2E-13 1.3E-17 112.1 9.6 70 408-483 1-70 (70)
66 PF00076 RRM_1: RNA recognitio 99.4 7.1E-13 1.5E-17 111.8 9.3 70 199-269 1-70 (70)
67 KOG0122 Translation initiation 99.4 4.7E-13 1E-17 134.0 9.1 84 193-276 186-269 (270)
68 KOG0106 Alternative splicing f 99.4 5.1E-13 1.1E-17 134.9 8.6 167 197-487 2-168 (216)
69 COG0724 RNA-binding proteins ( 99.4 4.4E-12 9.5E-17 135.6 14.6 80 196-275 115-194 (306)
70 KOG0121 Nuclear cap-binding pr 99.4 7.6E-13 1.7E-17 119.7 6.9 80 195-274 35-114 (153)
71 KOG0122 Translation initiation 99.4 1.6E-12 3.4E-17 130.3 9.3 82 404-490 188-269 (270)
72 KOG0149 Predicted RNA-binding 99.4 8.6E-13 1.9E-17 131.9 6.8 78 405-488 12-89 (247)
73 COG0724 RNA-binding proteins ( 99.3 7.7E-12 1.7E-16 133.7 14.0 147 101-256 115-285 (306)
74 PF14259 RRM_6: RNA recognitio 99.3 5.9E-12 1.3E-16 106.6 9.6 70 408-483 1-70 (70)
75 KOG0106 Alternative splicing f 99.3 1.7E-12 3.6E-17 131.2 7.2 146 102-272 2-167 (216)
76 PF14259 RRM_6: RNA recognitio 99.3 9.5E-12 2.1E-16 105.3 9.7 70 199-269 1-70 (70)
77 KOG0114 Predicted RNA-binding 99.3 8.9E-12 1.9E-16 108.7 9.0 82 403-492 16-97 (124)
78 KOG0121 Nuclear cap-binding pr 99.3 5.6E-12 1.2E-16 114.1 7.0 80 404-488 35-114 (153)
79 KOG0126 Predicted RNA-binding 99.3 5.6E-13 1.2E-17 127.5 0.6 83 194-276 33-115 (219)
80 PLN03120 nucleic acid binding 99.3 1.6E-11 3.4E-16 127.4 10.7 76 405-489 4-79 (260)
81 KOG4660 Protein Mei2, essentia 99.3 3.4E-11 7.3E-16 133.8 13.3 161 92-275 66-249 (549)
82 KOG0125 Ataxin 2-binding prote 99.3 1E-11 2.3E-16 129.0 8.6 103 172-276 72-174 (376)
83 PLN03120 nucleic acid binding 99.3 1.7E-11 3.6E-16 127.2 10.0 77 196-276 4-80 (260)
84 KOG0125 Ataxin 2-binding prote 99.3 1.9E-11 4.1E-16 127.1 10.1 80 404-490 95-174 (376)
85 KOG0126 Predicted RNA-binding 99.2 1.1E-12 2.5E-17 125.4 0.6 81 404-489 34-114 (219)
86 KOG0149 Predicted RNA-binding 99.2 9.2E-12 2E-16 124.6 6.6 81 193-274 9-89 (247)
87 PLN03213 repressor of silencin 99.2 3E-11 6.6E-16 130.7 9.3 80 194-277 8-89 (759)
88 KOG0111 Cyclophilin-type pepti 99.2 1.2E-11 2.6E-16 121.5 5.4 87 193-279 7-93 (298)
89 KOG4207 Predicted splicing fac 99.2 2.1E-11 4.5E-16 119.1 6.9 84 191-274 8-91 (256)
90 KOG0107 Alternative splicing f 99.2 2.6E-11 5.7E-16 115.9 7.2 79 194-277 8-86 (195)
91 smart00362 RRM_2 RNA recogniti 99.2 9.1E-11 2E-15 98.2 9.5 72 407-485 1-72 (72)
92 KOG0113 U1 small nuclear ribon 99.2 6.7E-11 1.5E-15 121.7 9.8 82 403-489 99-180 (335)
93 PLN03213 repressor of silencin 99.2 6.7E-11 1.5E-15 128.1 10.1 79 403-490 8-88 (759)
94 PLN03121 nucleic acid binding 99.2 9E-11 1.9E-15 119.8 10.1 76 195-274 4-79 (243)
95 KOG4207 Predicted splicing fac 99.2 3.8E-11 8.3E-16 117.3 7.0 79 405-488 13-91 (256)
96 KOG0114 Predicted RNA-binding 99.2 1.3E-10 2.7E-15 101.6 9.3 83 192-277 14-96 (124)
97 KOG4307 RNA binding protein RB 99.2 3.1E-10 6.7E-15 127.6 14.8 165 101-277 311-515 (944)
98 KOG0108 mRNA cleavage and poly 99.2 4.1E-11 9E-16 134.2 7.8 82 406-492 19-100 (435)
99 KOG0130 RNA-binding protein RB 99.2 5.2E-11 1.1E-15 108.7 6.6 85 193-277 69-153 (170)
100 KOG0130 RNA-binding protein RB 99.2 5.7E-11 1.2E-15 108.4 6.8 84 402-490 69-152 (170)
101 KOG0128 RNA-binding protein SA 99.2 4E-12 8.8E-17 146.6 -1.0 237 97-489 567-814 (881)
102 PLN03121 nucleic acid binding 99.2 1.5E-10 3.3E-15 118.1 10.5 77 404-489 4-80 (243)
103 smart00362 RRM_2 RNA recogniti 99.1 1.8E-10 3.8E-15 96.5 9.1 72 198-271 1-72 (72)
104 smart00360 RRM RNA recognition 99.1 1.5E-10 3.3E-15 96.5 8.7 71 410-485 1-71 (71)
105 KOG0113 U1 small nuclear ribon 99.1 2E-10 4.3E-15 118.3 9.0 83 193-275 98-180 (335)
106 smart00360 RRM RNA recognition 99.1 2.4E-10 5.2E-15 95.3 8.0 71 201-271 1-71 (71)
107 KOG0111 Cyclophilin-type pepti 99.1 6.2E-11 1.3E-15 116.6 4.0 82 405-491 10-91 (298)
108 cd00590 RRM RRM (RNA recogniti 99.1 7.4E-10 1.6E-14 93.2 10.0 74 407-486 1-74 (74)
109 KOG0107 Alternative splicing f 99.1 3.5E-10 7.5E-15 108.3 8.6 77 404-490 9-85 (195)
110 KOG0108 mRNA cleavage and poly 99.1 1.9E-10 4.2E-15 128.9 8.0 81 197-277 19-99 (435)
111 cd00590 RRM RRM (RNA recogniti 99.0 1.3E-09 2.9E-14 91.7 9.6 74 198-272 1-74 (74)
112 KOG0129 Predicted RNA-binding 99.0 8.5E-09 1.8E-13 114.0 15.1 156 98-257 256-432 (520)
113 smart00361 RRM_1 RNA recogniti 99.0 2.2E-09 4.9E-14 90.9 8.4 61 419-484 2-69 (70)
114 PF13893 RRM_5: RNA recognitio 99.0 2.9E-09 6.2E-14 86.0 8.4 56 422-487 1-56 (56)
115 KOG4454 RNA binding protein (R 98.9 2.4E-10 5.1E-15 112.8 1.9 141 99-264 7-151 (267)
116 KOG0129 Predicted RNA-binding 98.9 1.7E-08 3.6E-13 111.8 16.2 172 191-466 254-432 (520)
117 PF13893 RRM_5: RNA recognitio 98.9 4.7E-09 1E-13 84.8 8.5 56 213-273 1-56 (56)
118 KOG4210 Nuclear localization s 98.9 1.7E-09 3.7E-14 116.2 7.7 168 99-277 86-265 (285)
119 smart00361 RRM_1 RNA recogniti 98.9 4E-09 8.7E-14 89.4 7.6 61 210-270 2-69 (70)
120 KOG0415 Predicted peptidyl pro 98.9 2E-09 4.4E-14 112.7 6.9 83 403-490 237-319 (479)
121 KOG4307 RNA binding protein RB 98.8 7.5E-08 1.6E-12 108.9 17.1 79 403-486 864-943 (944)
122 KOG0112 Large RNA-binding prot 98.8 2.9E-09 6.2E-14 123.9 4.8 163 97-277 368-532 (975)
123 KOG0128 RNA-binding protein SA 98.8 3.4E-10 7.4E-15 131.0 -3.2 150 99-275 665-814 (881)
124 KOG0415 Predicted peptidyl pro 98.8 8.5E-09 1.8E-13 108.2 6.2 85 193-277 236-320 (479)
125 KOG4208 Nucleolar RNA-binding 98.7 2.5E-08 5.4E-13 98.5 8.2 83 403-490 47-130 (214)
126 KOG4208 Nucleolar RNA-binding 98.7 3.6E-08 7.9E-13 97.3 7.9 83 194-276 47-130 (214)
127 KOG4210 Nuclear localization s 98.7 2.1E-08 4.5E-13 107.9 5.4 177 195-490 87-264 (285)
128 KOG4454 RNA binding protein (R 98.6 8.7E-09 1.9E-13 101.9 1.1 142 192-468 5-146 (267)
129 KOG0226 RNA-binding proteins [ 98.6 3.4E-08 7.3E-13 100.0 4.7 78 406-488 191-268 (290)
130 KOG0226 RNA-binding proteins [ 98.6 3.4E-08 7.3E-13 100.0 4.5 163 101-273 96-267 (290)
131 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.1E-07 2.3E-12 105.1 7.8 84 401-489 401-484 (940)
132 KOG0153 Predicted RNA-binding 98.5 2E-07 4.4E-12 98.4 8.8 80 401-490 224-303 (377)
133 KOG0132 RNA polymerase II C-te 98.5 2E-07 4.4E-12 107.1 7.8 79 402-491 418-496 (894)
134 KOG0132 RNA polymerase II C-te 98.5 2.2E-07 4.8E-12 106.8 7.8 80 195-280 420-499 (894)
135 KOG0112 Large RNA-binding prot 98.5 1.1E-07 2.3E-12 111.1 4.2 162 401-653 368-529 (975)
136 KOG0153 Predicted RNA-binding 98.4 9E-07 2E-11 93.6 8.2 77 193-275 225-302 (377)
137 PF04059 RRM_2: RNA recognitio 98.3 2.1E-06 4.6E-11 76.7 8.8 79 197-275 2-86 (97)
138 KOG0533 RRM motif-containing p 98.3 1.4E-06 3E-11 90.6 8.5 85 193-278 80-164 (243)
139 PF04059 RRM_2: RNA recognitio 98.3 7.3E-06 1.6E-10 73.3 11.2 82 557-652 1-84 (97)
140 KOG0533 RRM motif-containing p 98.3 2E-06 4.4E-11 89.4 8.8 83 405-493 83-165 (243)
141 KOG4676 Splicing factor, argin 98.3 5.3E-07 1.2E-11 96.3 4.4 193 198-468 9-210 (479)
142 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.2E-06 2.6E-11 97.0 6.8 83 194-276 403-485 (940)
143 KOG0116 RasGAP SH3 binding pro 98.2 2.8E-06 6.1E-11 95.2 7.1 79 405-489 288-366 (419)
144 KOG0151 Predicted splicing reg 98.1 5.8E-06 1.3E-10 94.4 8.8 82 402-488 171-255 (877)
145 KOG4676 Splicing factor, argin 98.1 1.3E-06 2.8E-11 93.4 3.0 151 102-264 8-214 (479)
146 KOG4209 Splicing factor RNPS1, 98.1 4.2E-06 9.2E-11 87.3 6.0 83 193-276 98-180 (231)
147 KOG0116 RasGAP SH3 binding pro 98.1 5.6E-06 1.2E-10 92.9 6.4 79 196-275 288-366 (419)
148 KOG0151 Predicted splicing reg 98.0 1.2E-05 2.7E-10 91.8 7.5 84 193-276 171-257 (877)
149 KOG2193 IGF-II mRNA-binding pr 97.9 9.8E-07 2.1E-11 94.9 -2.4 155 197-490 2-157 (584)
150 PF11608 Limkain-b1: Limkain b 97.9 3.1E-05 6.8E-10 66.0 6.6 69 406-489 3-76 (90)
151 KOG4209 Splicing factor RNPS1, 97.9 1.8E-05 3.9E-10 82.6 5.7 80 404-489 100-179 (231)
152 KOG2193 IGF-II mRNA-binding pr 97.8 2.2E-06 4.7E-11 92.3 -2.2 151 103-274 3-155 (584)
153 KOG4660 Protein Mei2, essentia 97.8 2.3E-05 4.9E-10 88.2 4.5 72 402-483 72-143 (549)
154 PF08777 RRM_3: RNA binding mo 97.7 6.8E-05 1.5E-09 68.7 6.1 78 405-488 1-78 (105)
155 PF11608 Limkain-b1: Limkain b 97.7 0.00022 4.9E-09 60.9 8.2 74 558-654 3-76 (90)
156 KOG1995 Conserved Zn-finger pr 97.2 0.00029 6.3E-09 75.8 4.0 83 404-491 65-155 (351)
157 KOG1995 Conserved Zn-finger pr 97.1 0.00036 7.9E-09 75.0 3.8 85 193-277 63-155 (351)
158 PF08777 RRM_3: RNA binding mo 96.9 0.0017 3.7E-08 59.5 6.1 70 197-272 2-76 (105)
159 KOG0115 RNA-binding protein p5 96.8 0.0018 3.9E-08 66.6 5.9 80 407-488 33-112 (275)
160 COG5175 MOT2 Transcriptional r 96.8 0.0023 5E-08 67.7 6.8 81 405-490 114-203 (480)
161 COG5175 MOT2 Transcriptional r 96.8 0.0028 6.1E-08 67.0 6.8 82 195-276 113-203 (480)
162 KOG2314 Translation initiation 96.8 0.0035 7.6E-08 70.7 7.9 79 194-273 56-141 (698)
163 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0035 7.6E-08 49.8 5.7 53 101-169 1-53 (53)
164 KOG4849 mRNA cleavage factor I 96.6 0.0032 6.8E-08 66.9 5.6 77 99-184 78-156 (498)
165 KOG2314 Translation initiation 96.5 0.006 1.3E-07 68.9 7.2 80 403-488 56-142 (698)
166 KOG3152 TBP-binding protein, a 96.4 0.0018 4E-08 66.5 2.6 71 197-267 75-157 (278)
167 KOG4849 mRNA cleavage factor I 96.3 0.0032 6.8E-08 66.9 3.6 78 196-273 80-159 (498)
168 KOG1855 Predicted RNA-binding 96.3 0.0039 8.4E-08 68.4 4.1 66 403-468 229-307 (484)
169 KOG0115 RNA-binding protein p5 96.2 0.0085 1.8E-07 61.8 6.2 101 165-273 7-111 (275)
170 KOG2416 Acinus (induces apopto 96.2 0.0064 1.4E-07 69.1 5.5 92 544-655 431-522 (718)
171 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.013 2.7E-07 46.7 5.2 52 406-464 2-53 (53)
172 KOG1996 mRNA splicing factor [ 96.0 0.016 3.5E-07 60.6 7.0 78 406-488 282-365 (378)
173 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.033 7.1E-07 50.4 8.0 76 405-487 6-89 (100)
174 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.027 5.9E-07 50.9 7.3 79 100-183 5-84 (100)
175 KOG3152 TBP-binding protein, a 95.9 0.0085 1.9E-07 61.7 4.4 82 99-181 72-157 (278)
176 PF08675 RNA_bind: RNA binding 95.7 0.034 7.4E-07 47.8 6.6 59 193-260 6-64 (87)
177 KOG2202 U2 snRNP splicing fact 95.3 0.0076 1.6E-07 62.3 1.6 62 420-487 83-145 (260)
178 KOG1855 Predicted RNA-binding 95.1 0.025 5.4E-07 62.2 4.7 72 556-637 230-309 (484)
179 KOG1996 mRNA splicing factor [ 94.8 0.059 1.3E-06 56.5 6.3 65 210-274 300-365 (378)
180 PF08952 DUF1866: Domain of un 94.8 0.13 2.8E-06 49.4 8.1 73 195-276 26-107 (146)
181 KOG2416 Acinus (induces apopto 94.7 0.034 7.3E-07 63.5 4.6 78 401-489 440-521 (718)
182 KOG2202 U2 snRNP splicing fact 94.7 0.015 3.2E-07 60.2 1.5 63 211-274 83-146 (260)
183 PF08952 DUF1866: Domain of un 94.3 0.19 4E-06 48.4 8.1 73 403-489 25-106 (146)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.12 2.7E-06 51.9 6.8 81 195-275 6-97 (176)
185 PF08675 RNA_bind: RNA binding 93.8 0.3 6.6E-06 42.2 7.4 54 406-468 10-63 (87)
186 PF15023 DUF4523: Protein of u 93.3 0.26 5.7E-06 46.7 6.8 73 403-488 84-160 (166)
187 PF10309 DUF2414: Protein of u 92.4 0.4 8.8E-06 39.3 6.0 54 196-258 5-62 (62)
188 KOG2068 MOT2 transcription fac 92.0 0.067 1.5E-06 57.7 1.3 81 406-491 78-164 (327)
189 PF15023 DUF4523: Protein of u 91.7 0.97 2.1E-05 43.0 8.3 74 556-652 85-159 (166)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 90.8 0.32 6.8E-06 49.0 4.7 81 404-489 6-97 (176)
191 KOG2068 MOT2 transcription fac 90.2 0.14 3.1E-06 55.3 1.7 82 195-276 76-163 (327)
192 PF10309 DUF2414: Protein of u 90.0 1.3 2.9E-05 36.3 6.7 53 406-467 6-62 (62)
193 KOG4285 Mitotic phosphoprotein 87.6 1.3 2.9E-05 47.1 6.5 65 101-182 197-261 (350)
194 PF10567 Nab6_mRNP_bdg: RNA-re 86.8 13 0.00028 39.9 13.2 208 401-653 11-230 (309)
195 KOG2591 c-Mpl binding protein, 86.4 1.8 3.9E-05 49.7 7.1 90 167-269 152-245 (684)
196 KOG2591 c-Mpl binding protein, 86.2 1.1 2.5E-05 51.2 5.5 70 101-186 175-248 (684)
197 KOG2318 Uncharacterized conser 84.4 4.2 9.1E-05 47.1 8.9 128 98-273 171-305 (650)
198 KOG2135 Proteins containing th 83.6 0.67 1.4E-05 52.1 2.2 74 197-277 373-447 (526)
199 PF04847 Calcipressin: Calcipr 82.8 2.7 5.8E-05 42.6 6.0 62 209-276 8-71 (184)
200 PF07576 BRAP2: BRCA1-associat 82.5 7.9 0.00017 35.8 8.5 66 406-478 13-80 (110)
201 KOG2135 Proteins containing th 82.3 0.86 1.9E-05 51.3 2.4 75 404-490 371-446 (526)
202 PF07576 BRAP2: BRCA1-associat 82.1 8.2 0.00018 35.7 8.4 67 101-178 13-80 (110)
203 KOG4285 Mitotic phosphoprotein 81.8 3.3 7.2E-05 44.2 6.3 74 196-277 197-271 (350)
204 KOG2253 U1 snRNP complex, subu 81.1 1.3 2.9E-05 51.9 3.5 71 402-486 37-107 (668)
205 KOG4574 RNA-binding protein (c 79.2 1.3 2.8E-05 53.1 2.6 79 198-282 300-380 (1007)
206 KOG2253 U1 snRNP complex, subu 78.9 1.4 3.1E-05 51.6 2.9 72 192-272 36-107 (668)
207 KOG0804 Cytoplasmic Zn-finger 78.3 5.2 0.00011 45.1 6.7 68 404-478 73-141 (493)
208 PF11767 SET_assoc: Histone ly 76.6 8.1 0.00018 32.2 5.9 55 416-484 11-65 (66)
209 PF04847 Calcipressin: Calcipr 76.5 6.6 0.00014 39.8 6.5 63 418-489 8-70 (184)
210 PF07292 NID: Nmi/IFP 35 domai 74.4 5 0.00011 35.5 4.3 64 155-218 1-74 (88)
211 KOG2318 Uncharacterized conser 72.6 14 0.00031 42.9 8.5 82 402-488 171-306 (650)
212 PF03880 DbpA: DbpA RNA bindin 72.4 17 0.00036 30.9 7.1 59 206-273 11-74 (74)
213 KOG0804 Cytoplasmic Zn-finger 71.7 13 0.00029 42.0 7.8 66 556-637 73-138 (493)
214 KOG4574 RNA-binding protein (c 70.1 3.9 8.4E-05 49.3 3.4 73 559-653 300-372 (1007)
215 PF14111 DUF4283: Domain of un 69.1 6 0.00013 38.4 4.2 78 152-230 55-139 (153)
216 PF11767 SET_assoc: Histone ly 62.1 25 0.00055 29.3 5.8 55 207-270 11-65 (66)
217 KOG2891 Surface glycoprotein [ 57.4 4.1 8.9E-05 42.7 0.5 74 100-177 148-247 (445)
218 PF03880 DbpA: DbpA RNA bindin 56.5 40 0.00088 28.5 6.4 59 415-487 11-74 (74)
219 PF07292 NID: Nmi/IFP 35 domai 53.6 21 0.00045 31.6 4.2 24 404-427 51-74 (88)
220 TIGR02542 B_forsyth_147 Bacter 53.0 34 0.00074 31.5 5.5 105 109-248 11-129 (145)
221 KOG4410 5-formyltetrahydrofola 42.8 52 0.0011 35.0 5.8 50 99-163 328-378 (396)
222 PF14111 DUF4283: Domain of un 38.3 38 0.00082 32.7 4.0 32 406-437 105-137 (153)
223 KOG4019 Calcineurin-mediated s 34.8 30 0.00066 34.6 2.5 74 406-490 11-90 (193)
224 PF03468 XS: XS domain; Inter 31.9 39 0.00084 31.6 2.6 50 407-459 10-68 (116)
225 PF03468 XS: XS domain; Inter 29.4 57 0.0012 30.5 3.3 56 103-170 10-75 (116)
226 KOG4483 Uncharacterized conser 26.9 87 0.0019 35.0 4.6 56 195-257 390-446 (528)
227 KOG4019 Calcineurin-mediated s 26.8 60 0.0013 32.5 3.1 74 197-276 11-90 (193)
228 KOG4483 Uncharacterized conser 25.9 1.4E+02 0.0031 33.4 6.0 60 401-467 387-447 (528)
229 KOG2891 Surface glycoprotein [ 25.5 74 0.0016 33.7 3.6 35 406-440 150-196 (445)
230 COG5638 Uncharacterized conser 23.5 1.5E+02 0.0032 33.3 5.6 36 98-133 143-183 (622)
231 KOG4365 Uncharacterized conser 21.1 17 0.00036 40.9 -2.2 78 406-489 4-81 (572)
232 KOG2295 C2H2 Zn-finger protein 20.8 19 0.00041 41.7 -1.8 74 195-268 230-303 (648)
233 KOG1295 Nonsense-mediated deca 20.7 1.1E+02 0.0025 34.2 4.1 69 195-263 6-77 (376)
234 KOG2295 C2H2 Zn-finger protein 20.4 16 0.00035 42.3 -2.5 73 404-481 230-302 (648)
No 1
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-66 Score=558.87 Aligned_cols=506 Identities=39% Similarity=0.571 Sum_probs=386.6
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
..||||++||++++.++|.++|+.+|+|..+.++.++. .+.++||+||.|.-.++++.|+..+++..|.|+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g---------s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr 75 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG---------SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGR 75 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC---------cccccCccceeeehHhHHHHHHHHhhcCcccce
Confidence 37999999999999999999999999999999987743 678999999999999999999999999999999
Q ss_pred EEEEeccCCCC------------------------C--CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC
Q 002920 181 TVWARQLGGEG------------------------S--KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 234 (865)
Q Consensus 181 ~i~v~~~~~~~------------------------~--~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t 234 (865)
.|.|....... . ..+.++|+|+||||.+...+|+.+|+.||.|+.|.|++.+.
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d- 154 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD- 154 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-
Confidence 99874432100 0 22478999999999999999999999999999999998775
Q ss_pred CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCccc----
Q 002920 235 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAE---- 310 (865)
Q Consensus 235 g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---- 310 (865)
|...|||||+|....+|..||+.|||..|.||+|.|+||.++..|.......+..-.... ...++.+.+++.+
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~---~eEed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAV---KEEEDKEADEDDGKDFD 231 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhcc---chhhhcccccccccccc
Confidence 455599999999999999999999999999999999999999998775533211000000 0000000000000
Q ss_pred --CCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCC
Q 002920 311 --TASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSS 388 (865)
Q Consensus 311 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~ 388 (865)
...+++.+.+..++... .+.. +.........++..+ .++..+
T Consensus 232 ~Ed~e~d~edeEe~D~~se-~~ee------------------------------~~~~Eee~~~vDd~e-~S~~~~---- 275 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSE-AFEE------------------------------GEESEEEEDDVDDEE-SSGKKE---- 275 (678)
T ss_pred hhcccccccccccccccch-hhhc------------------------------ccccccccccccccc-ccccCc----
Confidence 00001111110000000 0000 000000000000000 000000
Q ss_pred CCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 389 KSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
.....+..-...+...+.+|||+|||+++|+++|.++|++||.|.++.|+.++.|+.++|+|||.|.+..+|+.||.+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 00000111112245567999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC-eEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhh
Q 002920 469 TTSGLG-IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTK 547 (865)
Q Consensus 469 ~~~~~g-~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~ 547 (865)
.+++.| +.|+||.|.|.+|+.+..+.+++..+....+.+++||||.++|.|..+++++.++|..||..|.........+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~ 435 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKK 435 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHh
Confidence 666666 9999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHH
Q 002920 548 LQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 627 (865)
Q Consensus 548 l~~p~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A 627 (865)
+.+|++++|+|+|.|+|||..+++..|..|...+|..++++.-..|..+..+... ..+.+.||+||.|..||+|
T Consensus 436 lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~------~k~~s~g~aF~~f~EhEha 509 (678)
T KOG0127|consen 436 LKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEE------KKNYSEGYAFVGFTEHEHA 509 (678)
T ss_pred hcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhh------hhcccccccccCccHHHHH
Confidence 9999999999999999999999999999999999999988744444444333332 2357899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEecccHHHHHHHHHHHHHHHH
Q 002920 628 LVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKIQAQQQ 671 (865)
Q Consensus 628 ~~Al~~lng~p~~fg~~~rliV~fA~e~~~~~~~~~~~~~~~~~ 671 (865)
+.|++.+ | .-++++|+|+.+++ +..+.+.|..+|
T Consensus 510 lkalk~~-G------~lkq~~Vefev~~~---k~~~sk~q~f~q 543 (678)
T KOG0127|consen 510 LKALKVL-G------VLKQAKVEFEVDGV---KAGRSKGQGFQQ 543 (678)
T ss_pred HHhhhcc-c------ccccceEEEEeccc---hhhhhhhhhHHH
Confidence 9999888 3 33799999999987 333344443333
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.7e-51 Score=483.18 Aligned_cols=369 Identities=21% Similarity=0.296 Sum_probs=303.5
Q ss_pred EEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeEE
Q 002920 103 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 182 (865)
Q Consensus 103 tVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i 182 (865)
+|||+|||+++|+++|+++|+.||.|.+|+|..+.. +++++|||||.|.+.++|++|+..||+..|.|+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---------t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---------TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 799999999999999999999999999999987743 68999999999999999999999999999999999
Q ss_pred EEeccCC--CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 183 WARQLGG--EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 183 ~v~~~~~--~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
++..... ........+|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|..|+..|||
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 8854321 1122345689999999999999999999999999999999875 688999999999999999999999999
Q ss_pred ceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 002920 261 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 340 (865)
Q Consensus 261 ~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (865)
..+.|+.|.|.+..++.....
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~----------------------------------------------------------- 172 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA----------------------------------------------------------- 172 (562)
T ss_pred cEecCceEEEecccccccccc-----------------------------------------------------------
Confidence 999999999987643321000
Q ss_pred hhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHH
Q 002920 341 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 420 (865)
Q Consensus 341 l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vtee 420 (865)
......++|||+|||.++|++
T Consensus 173 -----------------------------------------------------------~~~~~~~~l~V~nl~~~~tee 193 (562)
T TIGR01628 173 -----------------------------------------------------------APLKKFTNLYVKNLDPSVNED 193 (562)
T ss_pred -----------------------------------------------------------ccccCCCeEEEeCCCCcCCHH
Confidence 001123689999999999999
Q ss_pred HHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec----CeEEEEEEccCchhhhhh
Q 002920 421 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKALDKKLAHDK 496 (865)
Q Consensus 421 dL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~----Gr~L~V~~A~~k~~~~~~ 496 (865)
+|+++|+.||.|.++.++.+. +|.++|||||.|.+.++|.+|++.|| |..|. |+.|.|.++..+......
T Consensus 194 ~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~er~~~ 267 (562)
T TIGR01628 194 KLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRAEREAE 267 (562)
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChhhhHHH
Confidence 999999999999999998885 78899999999999999999999999 99999 999999998776433211
Q ss_pred hhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccCCHHHHHH
Q 002920 497 EIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKK 576 (865)
Q Consensus 497 ~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~vtee~L~~ 576 (865)
. ... ......... .....++|||+|||..+|+++|++
T Consensus 268 ~-~~~-----------------------------------~~~~~~~~~-------~~~~~~~l~V~nl~~~~~~~~L~~ 304 (562)
T TIGR01628 268 L-RRK-----------------------------------FEELQQERK-------MKAQGVNLYVKNLDDTVTDEKLRE 304 (562)
T ss_pred H-Hhh-----------------------------------HHhhhhhhh-------cccCCCEEEEeCCCCccCHHHHHH
Confidence 0 000 000000000 011246799999999999999999
Q ss_pred HHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEecccH
Q 002920 577 LCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNV 656 (865)
Q Consensus 577 lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~e~~ 656 (865)
+|+ +||.|.+|+|+.+ .+ +.++|||||+|.++++|.+|+..|||. +|+ ++.|.|.||.
T Consensus 305 ~F~---------~~G~i~~~~i~~d-~~------g~~~g~gfV~f~~~~~A~~A~~~~~g~--~~~-gk~l~V~~a~--- 362 (562)
T TIGR01628 305 LFS---------ECGEITSAKVMLD-EK------GVSRGFGFVCFSNPEEANRAVTEMHGR--MLG-GKPLYVALAQ--- 362 (562)
T ss_pred HHH---------hcCCeEEEEEEEC-CC------CCcCCeEEEEeCCHHHHHHHHHHhcCC--eeC-CceeEEEecc---
Confidence 999 5999999999998 34 389999999999999999999999996 555 4777899995
Q ss_pred HHHHHHHHHHHHHHH
Q 002920 657 QTLKQRNAKIQAQQQ 671 (865)
Q Consensus 657 ~~~~~~~~~~~~~~~ 671 (865)
....+.+.++.+++
T Consensus 363 -~k~~~~~~~~~~~~ 376 (562)
T TIGR01628 363 -RKEQRRAHLQDQFM 376 (562)
T ss_pred -CcHHHHHHHHHHHH
Confidence 44444445544444
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-45 Score=428.18 Aligned_cols=448 Identities=17% Similarity=0.198 Sum_probs=283.5
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHh--cCCcc
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKEI 177 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~l--ng~~i 177 (865)
++++|||+|||+++++++|+++|+.||.|.+|.++. ++|||||+|.+.++|..||..| ++..|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l 65 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYI 65 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceE
Confidence 478999999999999999999999999999999853 3579999999999999999864 78999
Q ss_pred CCeEEEEeccCCCC------------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEE
Q 002920 178 KGGTVWARQLGGEG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245 (865)
Q Consensus 178 ~G~~i~v~~~~~~~------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F 245 (865)
.|+.|+|....... ......+|||+||++.+|+++|+++|+.||.|.+|.|+++. .+|+|||+|
T Consensus 66 ~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef 141 (481)
T TIGR01649 66 RGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEF 141 (481)
T ss_pred cCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEE
Confidence 99999986542110 11233479999999999999999999999999999998753 247999999
Q ss_pred CCHHHHHHHHHHhCCceeCC--eeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccC
Q 002920 246 TCKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKED 323 (865)
Q Consensus 246 ~~~e~A~~Al~~lng~~i~g--r~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 323 (865)
.+.++|.+|+..|||..|.| +.|+|.|+.+............ .+.......+ ..+.... .. .
T Consensus 142 ~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s-------------~dyt~~~l~~-~~~~~~~-~~-~ 205 (481)
T TIGR01649 142 ESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDS-------------RDYTNPDLPG-RRDPGLD-QT-H 205 (481)
T ss_pred CCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCC-------------CCCcCCCCCC-CCCCCcC-cc-c
Confidence 99999999999999999954 6899999987654432221100 0000000000 0000000 00 0
Q ss_pred CCCCCCchhHHHHHHHHhhhcccCCCCC----CCCCcchhhhcCCCCCCchhhhhhhccccccccccCC-CCCCCCcccc
Q 002920 324 LPSNADFDEEVDIARKVLNKLTSTTGSL----PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSS-KSKPKSLKQT 398 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~----ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~-~~~~~~~~~~ 398 (865)
......+... . ........+|.. +.... ....+..... . ....+.... ...+......
T Consensus 206 ~~~~~~~~~~----~-~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~ 268 (481)
T TIGR01649 206 RQRQPALLGQ----H-PSSYGHDGYSSHGGPLAPLAG--GDRMGPPHGP---------P-SRYRPAYEAAPLAPAISSYG 268 (481)
T ss_pred cccccccccC----C-CccCCCcccccCCCCCCcccc--cccCCCcccC---------C-CCCcccccccccCccccccC
Confidence 0000000000 0 000000000000 00000 0000000000 0 000000000 0000000001
Q ss_pred CCCCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 399 EGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 399 ~~~~~~~~tLfV~NLP~-~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
.....++++|||+|||+ .+|+++|+++|+.||.|.+|+|+++. +|||||+|.+.++|..|+..|| |..|
T Consensus 269 ~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln-----g~~l 338 (481)
T TIGR01649 269 PAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLN-----GVKL 338 (481)
T ss_pred CCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEE
Confidence 11244678999999998 69999999999999999999998763 7999999999999999999999 9999
Q ss_pred cCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCC-CCCCCc
Q 002920 478 KGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQS-PNFHVS 556 (865)
Q Consensus 478 ~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~-p~~~~s 556 (865)
.|++|.|.++.......... +....+.+.....+.+... | .......+ .....+
T Consensus 339 ~g~~l~v~~s~~~~~~~~~~-------------------~~~~~~~~~~~d~~~~~~~-r-----~~~~~~~~~~~~~~p 393 (481)
T TIGR01649 339 FGKPLRVCPSKQQNVQPPRE-------------------GQLDDGLTSYKDYSSSRNH-R-----FKKPGSANKNNIQPP 393 (481)
T ss_pred CCceEEEEEcccccccCCCC-------------------CcCcCCCcccccccCCccc-c-----CCCcccccccccCCC
Confidence 99999999975432111000 0000000000000000000 0 00000000 011234
Q ss_pred cCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCC--eEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 002920 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV--IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 634 (865)
Q Consensus 557 ~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~--I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~l 634 (865)
..+|||+|||..+|+++|+++|+. ||. |..|+++... +..+|+|||+|.+.++|..||..|
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~---------~G~~~i~~ik~~~~~--------~~~~~~gfVeF~~~e~A~~Al~~l 456 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAE---------NGVHKVKKFKFFPKD--------NERSKMGLLEWESVEDAVEALIAL 456 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHh---------cCCccceEEEEecCC--------CCcceeEEEEcCCHHHHHHHHHHh
Confidence 578999999999999999999994 998 8888887432 125799999999999999999999
Q ss_pred cCCCCCCCCCC-----ceEEEEec
Q 002920 635 NNNPKTFGPEH-----RPIVEFAV 653 (865)
Q Consensus 635 ng~p~~fg~~~-----rliV~fA~ 653 (865)
||. .++... .|.|.||.
T Consensus 457 n~~--~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 457 NHH--QLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cCC--ccCCCCCCccceEEEEecc
Confidence 998 344211 25588884
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.3e-42 Score=389.15 Aligned_cols=344 Identities=22% Similarity=0.260 Sum_probs=238.3
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
..+|||+|||+.+++++|+++|+.||+|.+|+|+.++. +|+++|||||+|.+.++|.+||..|||..|.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---------CCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 56899999999999999999999999999999998854 789999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 181 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 181 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
.|.|.............+|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|+.||..|||
T Consensus 74 ~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 74 TIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99987654444445677999999999999999999999999999999999888889999999999999999999999999
Q ss_pred ceeCC--eeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHH
Q 002920 261 QKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIAR 338 (865)
Q Consensus 261 ~~i~g--r~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (865)
..+.| .+|.|.|+.............................. ....+................. .+. .....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 228 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLST--ILTAAGIGPMHHAAARFRPSAG-DFT--AVLAH 228 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccc--cccccCCCCccCcccccccCcc-hhh--hhhhh
Confidence 99876 67888888654321110000000000000000000000 0000000000000000000000 000 00000
Q ss_pred HHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCC-CC-CccccCCCCCCCCEEEEcCCCCC
Q 002920 339 KVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK-PK-SLKQTEGEDELQNTIFICNLPFD 416 (865)
Q Consensus 339 ~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~-~~-~~~~~~~~~~~~~tLfV~NLP~~ 416 (865)
...... .+.... + ....|....... .. ...........+.+|||+|||++
T Consensus 229 ~~~~~~------~~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 229 QQQQHA------VAQQHA----A------------------QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred hhhhcc------cccccc----c------------------ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 000000 000000 0 000000000000 00 00000012344678999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 417 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 417 vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
+++++|+++|++||.|.+|+|+.++.+|.++|||||+|.+.++|.+||..|| |..|+||.|.|.|+.++.
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-----G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-----GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999998764
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-42 Score=411.87 Aligned_cols=307 Identities=22% Similarity=0.328 Sum_probs=257.8
Q ss_pred hhHHHHHHhhcCcccCCceeeEEecccccchHHhhhhhhhhhhhhhhhhcccCCCCCCCCcCCCCchhhccCCCCCCCCc
Q 002920 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKA 81 (865)
Q Consensus 2 eda~~A~~~~n~~~~~gr~i~v~~a~~r~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~e~~~~~~~~k~ 81 (865)
+||++||+.+|++.|.|++|+|+|+ +++|. .|+
T Consensus 53 ~~A~~Al~~ln~~~i~gk~i~i~~s-~~~~~-~~~--------------------------------------------- 85 (562)
T TIGR01628 53 ADAERALETMNFKRLGGKPIRIMWS-QRDPS-LRR--------------------------------------------- 85 (562)
T ss_pred HHHHHHHHHhCCCEECCeeEEeecc-ccccc-ccc---------------------------------------------
Confidence 7999999999999999999999999 45433 000
Q ss_pred cccCCCcCCCcccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECC
Q 002920 82 ATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 161 (865)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s 161 (865)
....+|||+|||.++++++|+++|+.||.|.+|+++.+ .+|.++|||||.|.+
T Consensus 86 -----------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~----------~~g~skg~afV~F~~ 138 (562)
T TIGR01628 86 -----------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD----------ENGKSRGYGFVHFEK 138 (562)
T ss_pred -----------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec----------CCCCcccEEEEEECC
Confidence 12347999999999999999999999999999999876 368899999999999
Q ss_pred HHHHHHHHHHhcCCccCCeEEEEeccCCC-----CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCC
Q 002920 162 VKSACASVALLHQKEIKGGTVWARQLGGE-----GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL 236 (865)
Q Consensus 162 ~e~A~~Al~~lng~~i~G~~i~v~~~~~~-----~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~ 236 (865)
.++|.+|+..|||..+.|+.|.+...... ......++|||+|||+++|+++|+++|+.||.|.++.++.+. +|.
T Consensus 139 ~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~ 217 (562)
T TIGR01628 139 EESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGR 217 (562)
T ss_pred HHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCC
Confidence 99999999999999999999988543221 133456789999999999999999999999999999999885 688
Q ss_pred ccceEEEEECCHHHHHHHHHHhCCceeC----CeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCC
Q 002920 237 SKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETA 312 (865)
Q Consensus 237 ~kG~afV~F~~~e~A~~Al~~lng~~i~----gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 312 (865)
++|||||+|.+.++|.+|+..|+|..|. |+.|.|.++..+.......
T Consensus 218 ~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~----------------------------- 268 (562)
T TIGR01628 218 SRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAEL----------------------------- 268 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHH-----------------------------
Confidence 9999999999999999999999999999 9999999876543210000
Q ss_pred CCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCC
Q 002920 313 SDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKP 392 (865)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~ 392 (865)
.........
T Consensus 269 -------------------------~~~~~~~~~---------------------------------------------- 277 (562)
T TIGR01628 269 -------------------------RRKFEELQQ---------------------------------------------- 277 (562)
T ss_pred -------------------------HhhHHhhhh----------------------------------------------
Confidence 000000000
Q ss_pred CCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 393 KSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 393 ~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
.......+++|||+|||..+|+++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|+..||
T Consensus 278 -----~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~---- 347 (562)
T TIGR01628 278 -----ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMH---- 347 (562)
T ss_pred -----hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhc----
Confidence 0001223578999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CCeEecCeEEEEEEccCchhhh
Q 002920 473 LGIFLKGRQLTVLKALDKKLAH 494 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~A~~k~~~~ 494 (865)
|..|+|++|.|.+|..+....
T Consensus 348 -g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 348 -GRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred -CCeeCCceeEEEeccCcHHHH
Confidence 999999999999999876543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1e-41 Score=381.99 Aligned_cols=313 Identities=23% Similarity=0.348 Sum_probs=230.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (352)
T TIGR01661 82 PSSD---------------------------------------------------------------------------- 85 (352)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 4320
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
...+++|||+|||..+++++|+.+|+.||.|..
T Consensus 86 -----------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 118 (352)
T TIGR01661 86 -----------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIIT 118 (352)
T ss_pred -----------------------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEE
Confidence 011358999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEEEEEEccCchhhhhhhhhhcc---ccccccc
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKSK---NETNDHR 509 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L~V~~A~~k~~~~~~~~~~~~---~~~~d~~ 509 (865)
+.++.+..++.++|||||+|.+.++|..|+..|| |..+.| ++|.|.|+............... ......+
T Consensus 119 ~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-----g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (352)
T TIGR01661 119 SRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-----GTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTR 193 (352)
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCC
Confidence 9999988888999999999999999999999999 888876 68999998765422111100000 0000000
Q ss_pred -ch-hhhccccccCCCCCCCCCCchhHHHHHHH----HHHhh----------------------hhcCCCCCCCccCeEE
Q 002920 510 -NL-YLAKEGLILEGTPAAEGVSDDDMSKRQML----HEKKM----------------------TKLQSPNFHVSRTRLV 561 (865)
Q Consensus 510 -~l-~l~~~g~i~~~s~~~~~~s~~~~~~r~~~----~~~~~----------------------~~l~~p~~~~s~~~L~ 561 (865)
.+ ++...+...+................... ..... .....+.......+||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 273 (352)
T TIGR01661 194 VPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIF 273 (352)
T ss_pred CCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEE
Confidence 00 00000000000000000000000000000 00000 0000011011223699
Q ss_pred EeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCC
Q 002920 562 IYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTF 641 (865)
Q Consensus 562 V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~f 641 (865)
|+|||+.+++++|+++|+ +||.|.+|+|++|..++ .++|||||+|.++++|..||..|||. .|
T Consensus 274 V~NL~~~~~e~~L~~~F~---------~fG~v~~v~i~~d~~t~------~skG~aFV~F~~~~~A~~Ai~~lnG~--~~ 336 (352)
T TIGR01661 274 VYNLSPDTDETVLWQLFG---------PFGAVQNVKIIRDLTTN------QCKGYGFVSMTNYDEAAMAILSLNGY--TL 336 (352)
T ss_pred EeCCCCCCCHHHHHHHHH---------hCCCeEEEEEeEcCCCC------CccceEEEEECCHHHHHHHHHHhCCC--EE
Confidence 999999999999999999 69999999999998776 89999999999999999999999997 45
Q ss_pred CCCCceEEEEec
Q 002920 642 GPEHRPIVEFAV 653 (865)
Q Consensus 642 g~~~rliV~fA~ 653 (865)
+ +++|.|.|+.
T Consensus 337 ~-gr~i~V~~~~ 347 (352)
T TIGR01661 337 G-NRVLQVSFKT 347 (352)
T ss_pred C-CeEEEEEEcc
Confidence 4 4777799984
No 7
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-40 Score=364.57 Aligned_cols=359 Identities=22% Similarity=0.309 Sum_probs=293.0
Q ss_pred EEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeEE
Q 002920 103 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 182 (865)
Q Consensus 103 tVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i 182 (865)
.|||| +++|+..|.++|+.+|.|++|++-.+ . + +.|||||.|.++++|++|+.+||...|.|++|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d---------~--t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD---------A--T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec---------C--C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 58999 99999999999999999999999554 3 4 99999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce
Q 002920 183 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262 (865)
Q Consensus 183 ~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~ 262 (865)
++...... .+.|||.||+..++...|.++|+.||.|++|++..+. .| ++|| ||+|.+++.|.+||..|||..
T Consensus 68 rim~s~rd-----~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 68 RIMWSQRD-----PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred EeehhccC-----CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 88654321 1239999999999999999999999999999999986 46 9999 999999999999999999999
Q ss_pred eCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhh
Q 002920 263 FGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 342 (865)
Q Consensus 263 i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (865)
+.|+.|.|.....+..+......
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~--------------------------------------------------------- 162 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE--------------------------------------------------------- 162 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc---------------------------------------------------------
Confidence 99999999987655422110000
Q ss_pred hcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHH
Q 002920 343 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEV 422 (865)
Q Consensus 343 ~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL 422 (865)
....-+++||.|++.+++++.|
T Consensus 163 ----------------------------------------------------------~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 163 ----------------------------------------------------------YKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred ----------------------------------------------------------hhhhhhhhheeccccccchHHH
Confidence 0011258999999999999999
Q ss_pred HHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcc
Q 002920 423 KQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSK 502 (865)
Q Consensus 423 ~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~ 502 (865)
.++|+.||.|.++.++.+. .+.++||+||.|.++++|..|+..|+ |..++|..+.|..+..+.+....-
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~~l----- 253 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREAEL----- 253 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHHHH-----
Confidence 9999999999999998885 67799999999999999999999999 999999999999987643221100
Q ss_pred cccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccCCHHHHHHHHHHHH
Q 002920 503 NETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 582 (865)
Q Consensus 503 ~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v 582 (865)
+...... ...+.......+|||.||+..++.+.|+.+|.
T Consensus 254 ----------------------------------~~~~~~~----~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~--- 292 (369)
T KOG0123|consen 254 ----------------------------------KRKFEQE----FAKRSVSLQGANLYVKNLDETLSDEKLRKIFS--- 292 (369)
T ss_pred ----------------------------------hhhhHhh----hhhccccccccccccccCccccchhHHHHHHh---
Confidence 0000000 00111122346799999999999999999999
Q ss_pred HhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEecccHHHHHHH
Q 002920 583 VSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQR 662 (865)
Q Consensus 583 ~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~e~~~~~~~~ 662 (865)
.||.|.+++|+.+. .+.++|||||+|.+.++|..|+..+||. +.+ ++.+.|.++ ++.+.+
T Consensus 293 ------~~GeI~s~kv~~~~-------~g~skG~gfV~fs~~eeA~~A~~~~n~~--~i~-~k~l~vav~----qr~~~r 352 (369)
T KOG0123|consen 293 ------SFGEITSAKVMVDE-------NGKSKGFGFVEFSSPEEAKKAMTEMNGR--LIG-GKPLYVAVA----QRKEDR 352 (369)
T ss_pred ------cccceeeEEEEecc-------CCCccceEEEEcCCHHHHHHHHHhhChh--hhc-CCchhhhHH----hhhccc
Confidence 49999999999874 4589999999999999999999999997 444 245558888 566666
Q ss_pred HHHHHHHHH
Q 002920 663 NAKIQAQQQ 671 (865)
Q Consensus 663 ~~~~~~~~~ 671 (865)
.++++.+++
T Consensus 353 ~~~~~~~~~ 361 (369)
T KOG0123|consen 353 RARLQAVFG 361 (369)
T ss_pred hhhhhhhcc
Confidence 666655554
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-37 Score=358.70 Aligned_cols=301 Identities=21% Similarity=0.238 Sum_probs=233.1
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC-
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK- 178 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~- 178 (865)
..++|||+|||+++++++|+++|+.||.|.+|+|+++ .+|+++|||||+|.+.++|++||..||+..|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D----------~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD----------FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC----------CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 3579999999999999999999999999999999988 37999999999999999999999999999885
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEE-cccCCCCCccceEEEEECCHHHHHHHHH
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYI-PHNTDTGLSKGFAFVKFTCKRDAESAIQ 256 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i-~~d~~tg~~kG~afV~F~~~e~A~~Al~ 256 (865)
|+.|.+... ...++|||+|||..+++++|.+.|+.++. +..+.+ ......++++|||||+|.+.++|..|+.
T Consensus 127 Gr~l~V~~S------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 127 GRLLGVCIS------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred Ccccccccc------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 777766543 24579999999999999999999999864 444443 3333456789999999999999999998
Q ss_pred HhCC--ceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHH
Q 002920 257 KFNG--QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 334 (865)
Q Consensus 257 ~lng--~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 334 (865)
.|+. ..+.|+.|.|.|+.+..... +.
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d---------------------------------------~~------------- 228 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVD---------------------------------------ED------------- 228 (578)
T ss_pred HhhccceEecCceEEEEeeccccccc---------------------------------------cc-------------
Confidence 8764 35789999999986542100 00
Q ss_pred HHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCC
Q 002920 335 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 414 (865)
Q Consensus 335 ~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP 414 (865)
.....++|||+|||
T Consensus 229 ------------------------------------------------------------------~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 229 ------------------------------------------------------------------VMAKVKILYVRNLM 242 (578)
T ss_pred ------------------------------------------------------------------ccccccEEEEeCCC
Confidence 00113589999999
Q ss_pred CCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchh
Q 002920 415 FDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 492 (865)
Q Consensus 415 ~~vteedL~e~Fs~f--G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~ 492 (865)
.++|+++|+++|+.| |.|..|.++ ++||||+|.+.++|.+|++.|| |..|+|+.|.|.||.+...
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln-----G~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN-----GKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEccCCCc
Confidence 999999999999999 999999765 4699999999999999999999 9999999999999987643
Q ss_pred hhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccCCHH
Q 002920 493 AHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEK 572 (865)
Q Consensus 493 ~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~vtee 572 (865)
......... .|. ...... .... ..+......+.++++.|+++.++++
T Consensus 310 ~~~~~~~rg--------------~gg-~~~~~~-----------------~~~~-~~g~~~sp~s~~~~~g~~~~~~~~~ 356 (578)
T TIGR01648 310 KSYVRYTRG--------------TGG-RGKERQ-----------------AARQ-SLGQVYDPASRSLAYEDYYYHPPYA 356 (578)
T ss_pred ccccccccc--------------cCC-Cccccc-----------------cccc-ccCcccCcccccccccccccccccc
Confidence 211000000 000 000000 0000 0111122245789999999999999
Q ss_pred HHHHHHHH
Q 002920 573 GLKKLCID 580 (865)
Q Consensus 573 ~L~~lF~~ 580 (865)
-+.++|..
T Consensus 357 ~~~~~f~~ 364 (578)
T TIGR01648 357 PSLHFPRM 364 (578)
T ss_pred chhhcccc
Confidence 99999984
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=309.05 Aligned_cols=302 Identities=23% Similarity=0.390 Sum_probs=236.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|+|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|-++++|++|+..|||..+..+.|.|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
|+.|..
T Consensus 117 yARPSs-------------------------------------------------------------------------- 122 (360)
T KOG0145|consen 117 YARPSS-------------------------------------------------------------------------- 122 (360)
T ss_pred eccCCh--------------------------------------------------------------------------
Confidence 997653
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 431 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~ 431 (865)
+...+.+|||.+||..+|..||.++|++||.
T Consensus 123 -------------------------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr 153 (360)
T KOG0145|consen 123 -------------------------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGR 153 (360)
T ss_pred -------------------------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhh
Confidence 1112468999999999999999999999999
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEEEEEEccCchhhhhhhhhhccccccccc
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKSKNETNDHR 509 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L~V~~A~~k~~~~~~~~~~~~~~~~d~~ 509 (865)
|.-.+|+.|..+|.++|.|||.|+...+|..||..|| |..--| -+|.|.||...........-...-.....+
T Consensus 154 IItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-----G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr 228 (360)
T KOG0145|consen 154 IITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARR 228 (360)
T ss_pred hhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc-----CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcccc
Confidence 9999999999999999999999999999999999999 665544 589999998664433222111100000000
Q ss_pred c---h----------hhh-ccccccCCCCCC-CCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccCCHHHH
Q 002920 510 N---L----------YLA-KEGLILEGTPAA-EGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGL 574 (865)
Q Consensus 510 ~---l----------~l~-~~g~i~~~s~~~-~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~vtee~L 574 (865)
- + ++. ....+...+|.. .+++. .....-|...-...+|||.||.++.+|.-|
T Consensus 229 ~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~-------------l~~~~lp~~~~~g~ciFvYNLspd~de~~L 295 (360)
T KOG0145|consen 229 YGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG-------------LAGVNLPGGPGGGWCIFVYNLSPDADESIL 295 (360)
T ss_pred CCCcccchhhhhccccccchhhhhccCCCccccccce-------------eeeeccCCCCCCeeEEEEEecCCCchHhHH
Confidence 0 0 000 000000011110 00000 001111333334679999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q 002920 575 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 652 (865)
Q Consensus 575 ~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA 652 (865)
.++|. |||.|..|+|++|..+. +++|||||.+.+-++|..||..|||. -+| ++.|-|.|-
T Consensus 296 WQlFg---------pFGAv~nVKvirD~ttn------kCKGfgFVtMtNYdEAamAi~sLNGy--~lg-~rvLQVsFK 355 (360)
T KOG0145|consen 296 WQLFG---------PFGAVTNVKVIRDFTTN------KCKGFGFVTMTNYDEAAMAIASLNGY--RLG-DRVLQVSFK 355 (360)
T ss_pred HHHhC---------cccceeeEEEEecCCcc------cccceeEEEecchHHHHHHHHHhcCc--ccc-ceEEEEEEe
Confidence 99999 79999999999998776 89999999999999999999999997 456 355559986
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.2e-37 Score=303.73 Aligned_cols=314 Identities=23% Similarity=0.282 Sum_probs=240.3
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
...|+|.=||..+|++||+.+|...|+|++|++++|+. +|.+.||+||.|-.+++|++||..|||-.+..+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi---------tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc---------cccccccceeeecChHHHHHHHhhhcceeeccc
Confidence 44588888999999999999999999999999999975 899999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 181 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 181 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
.|.|.............+|||.+||..+|..+|..+|++||.|..-+|+.|..+|.++|.|||.|....+|+.||..|||
T Consensus 112 TIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred eEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 99997776666677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCC--eeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhH--HHH
Q 002920 261 QKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE--VDI 336 (865)
Q Consensus 261 ~~i~g--r~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~ 336 (865)
..-.| .+|.|.++..+........-... ...+...+... ...
T Consensus 192 ~~P~g~tepItVKFannPsq~t~~a~ls~l----------------------------------y~sp~rr~~Gp~hh~~ 237 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQKTNQALLSQL----------------------------------YQSPARRYGGPMHHQA 237 (360)
T ss_pred CCCCCCCCCeEEEecCCcccccchhhhHHh----------------------------------hcCccccCCCcccchh
Confidence 98744 58999998654321110000000 00000000000 000
Q ss_pred HHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCC
Q 002920 337 ARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFD 416 (865)
Q Consensus 337 ~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~ 416 (865)
.+-.+.+++. |.+......|...... ....-.--.+....+.+|||.||.++
T Consensus 238 ~r~r~~~~~~-----~~~~~~rfsP~~~d~m-----------------------~~l~~~~lp~~~~~g~ciFvYNLspd 289 (360)
T KOG0145|consen 238 QRFRLDNLLN-----PHAAQARFSPMTIDGM-----------------------SGLAGVNLPGGPGGGWCIFVYNLSPD 289 (360)
T ss_pred hhhccccccc-----hhhhhccCCCcccccc-----------------------ceeeeeccCCCCCCeeEEEEEecCCC
Confidence 0000111110 0001111111111110 00000001123445789999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 417 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 417 vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
.+|.-|.++|.+||.|..|+|++|..+.+++|||||.+.+.++|..||..|| |..+++|.|.|.|...+
T Consensus 290 ~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-----Gy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 290 ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-----GYRLGDRVLQVSFKTNK 358 (360)
T ss_pred chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-----CccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999996543
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=6.1e-36 Score=344.22 Aligned_cols=279 Identities=21% Similarity=0.270 Sum_probs=222.0
Q ss_pred CHHHHHHHHHHhcCCccCCeEEEEeccC-----CCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCC
Q 002920 161 TVKSACASVALLHQKEIKGGTVWARQLG-----GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 235 (865)
Q Consensus 161 s~e~A~~Al~~lng~~i~G~~i~v~~~~-----~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg 235 (865)
-.++|.+||..++|..+........... ....+...++|||+|||++++|++|+++|+.||.|.+|+|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 3688999999888877654322221111 1122445689999999999999999999999999999999999 789
Q ss_pred CccceEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCC
Q 002920 236 LSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD 314 (865)
Q Consensus 236 ~~kG~afV~F~~~e~A~~Al~~lng~~i~-gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 314 (865)
.++|||||+|.+.++|+.||..||+..|. |+.|.|.++.
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~---------------------------------------- 136 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV---------------------------------------- 136 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------------------------------------
Confidence 99999999999999999999999999884 7776665531
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCC
Q 002920 315 DSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKS 394 (865)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~ 394 (865)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEee-cCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 395 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 395 ~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~-V~sv~i~~-d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
..++|||+|||.++++++|.++|+.|+. ++.+.++. ....++++|||||+|.++++|..|+..|+..
T Consensus 137 ---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g-- 205 (578)
T TIGR01648 137 ---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG-- 205 (578)
T ss_pred ---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc--
Confidence 1258999999999999999999999864 44443322 2235678999999999999999999988621
Q ss_pred CCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCC
Q 002920 473 LGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN 552 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~ 552 (865)
.+.+.|+.|.|.|+.+...... .
T Consensus 206 -ki~l~Gr~I~VdwA~p~~~~d~--------------------------------------------------------~ 228 (578)
T TIGR01648 206 -RIQLWGHVIAVDWAEPEEEVDE--------------------------------------------------------D 228 (578)
T ss_pred -ceEecCceEEEEeecccccccc--------------------------------------------------------c
Confidence 3578999999999876432100 0
Q ss_pred CCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCC--CCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHH
Q 002920 553 FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK--PVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 630 (865)
Q Consensus 553 ~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~--G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~A 630 (865)
.....++|||+|||..+|+++|+++|+ .| |.|..|+++ ++||||+|.++++|..|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~---------~f~~G~I~rV~~~--------------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFS---------EFKPGKVERVKKI--------------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHH---------hcCCCceEEEEee--------------cCeEEEEeCCHHHHHHH
Confidence 001235799999999999999999999 48 999999776 56999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEecc
Q 002920 631 LRVLNNNPKTFGPEHRPIVEFAVD 654 (865)
Q Consensus 631 l~~lng~p~~fg~~~rliV~fA~e 654 (865)
|..||+. .|+ ++.|.|+||..
T Consensus 286 i~~lnG~--~i~-Gr~I~V~~Akp 306 (578)
T TIGR01648 286 MDELNGK--ELE-GSEIEVTLAKP 306 (578)
T ss_pred HHHhCCC--EEC-CEEEEEEEccC
Confidence 9999997 444 36777999953
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.4e-35 Score=339.03 Aligned_cols=337 Identities=21% Similarity=0.298 Sum_probs=227.7
Q ss_pred cccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC
Q 002920 96 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 175 (865)
Q Consensus 96 ~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~ 175 (865)
...+..+||||+|||+.+++++|+++|+.||.|..|+|+.++. +|.++|||||+|.+.++|.+||. |+|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---------~~~skg~afVeF~~~e~A~~Al~-l~g~ 153 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---------SRRSKGVAYVEFYDVESVIKALA-LTGQ 153 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---------CCCcceEEEEEECCHHHHHHHHH-hCCC
Confidence 3457789999999999999999999999999999999988753 78999999999999999999998 9999
Q ss_pred ccCCeEEEEeccCCC------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEE
Q 002920 176 EIKGGTVWARQLGGE------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243 (865)
Q Consensus 176 ~i~G~~i~v~~~~~~------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV 243 (865)
.|.|++|.+...... ......++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+|.++|||||
T Consensus 154 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 154 MLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred EECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 999999988643211 11123689999999999999999999999999999999999988999999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccC
Q 002920 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKED 323 (865)
Q Consensus 244 ~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 323 (865)
+|.+.++|..|+..|||..|.|++|.|.|+............. ... ..... +
T Consensus 234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~--~~~-~~~~~------------~------------- 285 (457)
T TIGR01622 234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTF--EDI-DKQQQ------------M------------- 285 (457)
T ss_pred EECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhh--ccc-ccccc------------C-------------
Confidence 9999999999999999999999999999987332111110000 000 00000 0
Q ss_pred CCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccc---cCCCCCCCCccc--c
Q 002920 324 LPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKL---NSSKSKPKSLKQ--T 398 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~s~~~~~~~~~~--~ 398 (865)
........................+.+|............ ..+ ..+....|. ............ .
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
T TIGR01622 286 -GKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKL-QRD--------GIIDPNIPSRYATGALAIMARNSFVPS 355 (457)
T ss_pred -CcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccc-ccc--------ccccccccccccccccccccCCCCCCc
Confidence 0000000000000000000000000001000000000000 000 000000000 000000000000 0
Q ss_pred CCCCCCCCEEEEcCCCCCCC----------HHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 399 EGEDELQNTIFICNLPFDLD----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 399 ~~~~~~~~tLfV~NLP~~vt----------eedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
........+|+|.||....+ .+||++.|++||.|+.|.|.. ....|++||+|.++++|.+|+..||
T Consensus 356 ~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~ln 431 (457)
T TIGR01622 356 TNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALN 431 (457)
T ss_pred ccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhc
Confidence 01234578999999955443 378999999999999998753 3468999999999999999999999
Q ss_pred CCCCCCeEecCeEEEEEEccC
Q 002920 469 TTSGLGIFLKGRQLTVLKALD 489 (865)
Q Consensus 469 ~~~~~g~~l~Gr~L~V~~A~~ 489 (865)
|.+|+|+.|.|.|...
T Consensus 432 -----Gr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 432 -----GRYFGGKMITAAFVVN 447 (457)
T ss_pred -----CcccCCeEEEEEEEcH
Confidence 9999999999999754
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1e-34 Score=336.76 Aligned_cols=325 Identities=18% Similarity=0.197 Sum_probs=232.1
Q ss_pred ChhHHHHHHh--hcCcccCCceeeEEecccccchHHhhhhhhhhhhhhhhhhcccCCCCCCCCcCCCCchhhccCCCCCC
Q 002920 1 MEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP 78 (865)
Q Consensus 1 ~eda~~A~~~--~n~~~~~gr~i~v~~a~~r~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~e~~~~~~~ 78 (865)
.|+|.+||+. +|+..|.||+|+|+|+..+... |. .+ ++ .
T Consensus 48 ~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~--~~---~~------------------~~---~------------- 88 (481)
T TIGR01649 48 EESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK--RD---GN------------------SD---F------------- 88 (481)
T ss_pred hHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc--cC---CC------------------Cc---c-------------
Confidence 3789999997 4788999999999999433210 00 00 00 0
Q ss_pred CCccccCCCcCCCcccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEE
Q 002920 79 RKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVL 158 (865)
Q Consensus 79 ~k~~~~~~~~~~~~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~ 158 (865)
.........+|||+||++.+|+++|+++|+.||.|.+|.|+.+ . ..|+|||+
T Consensus 89 ---------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~-----------~--~~~~afVe 140 (481)
T TIGR01649 89 ---------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK-----------N--NVFQALVE 140 (481)
T ss_pred ---------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec-----------C--CceEEEEE
Confidence 0000123468999999999999999999999999999998654 1 24689999
Q ss_pred ECCHHHHHHHHHHhcCCccCCe--EEEEeccC----------CC------------------------------------
Q 002920 159 YTTVKSACASVALLHQKEIKGG--TVWARQLG----------GE------------------------------------ 190 (865)
Q Consensus 159 F~s~e~A~~Al~~lng~~i~G~--~i~v~~~~----------~~------------------------------------ 190 (865)
|.+.++|.+|+..|||..|.|. .|.+.-.. ..
T Consensus 141 f~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (481)
T TIGR01649 141 FESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSY 220 (481)
T ss_pred ECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccC
Confidence 9999999999999999999764 33321000 00
Q ss_pred -------------------------------------------------CCCCCCcEEEEcCCCC-CCCHHHHHHhhcCC
Q 002920 191 -------------------------------------------------GSKTQKWKLIIRNIPF-KAKVNEIKDMFSPV 220 (865)
Q Consensus 191 -------------------------------------------------~~~~~~~~l~V~nLp~-~~tee~L~~~F~~~ 220 (865)
......++|||+|||+ .+|+++|+++|+.|
T Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y 300 (481)
T TIGR01649 221 GHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY 300 (481)
T ss_pred CCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 0012456999999998 69999999999999
Q ss_pred CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCC
Q 002920 221 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS 300 (865)
Q Consensus 221 G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~ 300 (865)
|.|..|+|+++ .+|||||+|.+.++|..||..|||..|.|++|+|.++.......... + ..+.
T Consensus 301 G~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~---~-------~~~~-- 363 (481)
T TIGR01649 301 GNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPRE---G-------QLDD-- 363 (481)
T ss_pred CCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCC---C-------cCcC--
Confidence 99999999875 36999999999999999999999999999999999986543211000 0 0000
Q ss_pred CCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhcccc
Q 002920 301 DDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVS 380 (865)
Q Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
+ .. ...+|... .. ..+.
T Consensus 364 ---------~-~~------------~~~d~~~~------~~-~r~~---------------------------------- 380 (481)
T TIGR01649 364 ---------G-LT------------SYKDYSSS------RN-HRFK---------------------------------- 380 (481)
T ss_pred ---------C-Cc------------ccccccCC------cc-ccCC----------------------------------
Confidence 0 00 00000000 00 0000
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeecCCCCCCCceEEEEeCCHH
Q 002920 381 DVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRPKGTGFLKFKTVE 458 (865)
Q Consensus 381 ~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~--V~sv~i~~d~~~g~~kG~aFV~F~s~e 458 (865)
.|. .........++.+|||+|||.++|+++|+++|+.||. |..|+++... ++ .+|+|||+|.+.+
T Consensus 381 --~~~---------~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e 447 (481)
T TIGR01649 381 --KPG---------SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVE 447 (481)
T ss_pred --Ccc---------cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHH
Confidence 000 0000001235679999999999999999999999998 8888776443 33 5899999999999
Q ss_pred HHHHHHHHhcCCCCCCeEecCeE------EEEEEccCc
Q 002920 459 AATAAVSASKTTSGLGIFLKGRQ------LTVLKALDK 490 (865)
Q Consensus 459 ~A~~Al~~ln~~~~~g~~l~Gr~------L~V~~A~~k 490 (865)
+|..||..|| |..|.|+. |.|.|+.++
T Consensus 448 ~A~~Al~~ln-----~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 448 DAVEALIALN-----HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHhc-----CCccCCCCCCccceEEEEeccCC
Confidence 9999999999 99999985 999998654
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5e-35 Score=339.31 Aligned_cols=331 Identities=24% Similarity=0.334 Sum_probs=224.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456799999999999999999999999999999999999999999999999999999999997 8999999999999876
Q ss_pred CCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002920 274 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 353 (865)
Q Consensus 274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps 353 (865)
.......... ...
T Consensus 166 ~~~~~~~~~~------------------------------------------------------------~~~------- 178 (457)
T TIGR01622 166 QAEKNRAAKA------------------------------------------------------------ATH------- 178 (457)
T ss_pred chhhhhhhhc------------------------------------------------------------ccc-------
Confidence 4321100000 000
Q ss_pred CCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCee
Q 002920 354 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 433 (865)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~ 433 (865)
. ....+..++|||+|||..+|+++|+++|+.||.|.
T Consensus 179 -------------------------~-------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 179 -------------------------Q-------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred -------------------------c-------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 0 00011247999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhh--hcccccccccc-
Q 002920 434 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEID--KSKNETNDHRN- 510 (865)
Q Consensus 434 sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~--~~~~~~~d~~~- 510 (865)
.|.|+.+..+|.++|||||+|.+.++|.+|+..|| |+.|.|++|.|.||............ ..........+
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-----GFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNL 289 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-----CcEECCEEEEEEEccCCCccccchhhhccccccccCCcCC
Confidence 99999999889999999999999999999999999 99999999999998743221111000 00000000000
Q ss_pred -------h--hhhcc----ccccCCCCC-CCCCCchh--HHHH---------HHH-HHHhhhhcCCCCCCCccCeEEEeC
Q 002920 511 -------L--YLAKE----GLILEGTPA-AEGVSDDD--MSKR---------QML-HEKKMTKLQSPNFHVSRTRLVIYN 564 (865)
Q Consensus 511 -------l--~l~~~----g~i~~~s~~-~~~~s~~~--~~~r---------~~~-~~~~~~~l~~p~~~~s~~~L~V~N 564 (865)
+ .+... +...++... ...+.... .... ... .......+...+...+..+|+|.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n 369 (457)
T TIGR01622 290 NTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSN 369 (457)
T ss_pred CccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEec
Confidence 0 00000 000111000 00000000 0000 000 000000111111335668899999
Q ss_pred CCcc--CCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 002920 565 LPKS--MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFG 642 (865)
Q Consensus 565 LP~~--vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg 642 (865)
|... ..+..+...|.+.|.+.|. .||.|..|.|... .+.|++||+|.++++|..|++.|||. +|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~~----------~~~G~~fV~F~~~e~A~~A~~~lnGr--~f~ 436 (457)
T TIGR01622 370 MFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDTK----------NSAGKIYLKFSSVDAALAAFQALNGR--YFG 436 (457)
T ss_pred CCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeCC----------CCceeEEEEECCHHHHHHHHHHhcCc--ccC
Confidence 9433 2233333333334455555 4999999998743 46899999999999999999999998 787
Q ss_pred CCCceEEEEeccc
Q 002920 643 PEHRPIVEFAVDN 655 (865)
Q Consensus 643 ~~~rliV~fA~e~ 655 (865)
++.|.|.|..+.
T Consensus 437 -gr~i~~~~~~~~ 448 (457)
T TIGR01622 437 -GKMITAAFVVND 448 (457)
T ss_pred -CeEEEEEEEcHH
Confidence 455569999654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=315.42 Aligned_cols=249 Identities=24% Similarity=0.315 Sum_probs=215.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc-
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI- 177 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i- 177 (865)
...+.||||.||.++.|++|..||.+.|.|-++++|+++. +|.++|||||.|.+.++|+.||..||+.+|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~---------sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF---------SGDNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc---------CCCCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 5578999999999999999999999999999999999976 899999999999999999999999999988
Q ss_pred CCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEcccCC-CCCccceEEEEECCHHHHHHHH
Q 002920 178 KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTD-TGLSKGFAFVKFTCKRDAESAI 255 (865)
Q Consensus 178 ~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~-tg~~kG~afV~F~~~e~A~~Al 255 (865)
.|+.|.|.-+ ...++|||+|||.++++++|.+.|+..++ |+.|.|+..+. ..+++|||||+|.+...|..|-
T Consensus 152 ~GK~igvc~S------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 152 PGKLLGVCVS------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred CCCEeEEEEe------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 5788887543 34569999999999999999999999886 77787776663 3579999999999999999998
Q ss_pred HHhCCc--eeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhH
Q 002920 256 QKFNGQ--KFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 333 (865)
Q Consensus 256 ~~lng~--~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 333 (865)
..|-.- .+.|..+.|+||.|.....
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~d----------------------------------------------------- 252 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPD----------------------------------------------------- 252 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCC-----------------------------------------------------
Confidence 876443 4689999999997653100
Q ss_pred HHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCC
Q 002920 334 VDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL 413 (865)
Q Consensus 334 ~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NL 413 (865)
.+.|+. -..|||+||
T Consensus 253 ------------------------------------------ed~ms~-----------------------VKvLYVRNL 267 (506)
T KOG0117|consen 253 ------------------------------------------EDTMSK-----------------------VKVLYVRNL 267 (506)
T ss_pred ------------------------------------------hhhhhh-----------------------eeeeeeecc
Confidence 000111 147999999
Q ss_pred CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhh
Q 002920 414 PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 493 (865)
Q Consensus 414 P~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~ 493 (865)
+.++|++.|.++|+.||.|..|+.+ +.||||.|.+.++|.+||+.|| |..|+|..|.|.+|.+....
T Consensus 268 ~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~~n-----gkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 268 MESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKETN-----GKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred chhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHHhc-----CceecCceEEEEecCChhhh
Confidence 9999999999999999999999876 4499999999999999999999 99999999999999987543
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-36 Score=332.81 Aligned_cols=294 Identities=24% Similarity=0.369 Sum_probs=250.9
Q ss_pred hhHHHHHHhhcCcccCCceeeEEecccccchHHhhhhhhhhhhhhhhhhcccCCCCCCCCcCCCCchhhccCCCCCCCCc
Q 002920 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKA 81 (865)
Q Consensus 2 eda~~A~~~~n~~~~~gr~i~v~~a~~r~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~e~~~~~~~~k~ 81 (865)
+||++||+.+|++.|.|++|||||+ +|+|+
T Consensus 48 ~da~~A~~~~n~~~~~~~~~rim~s-~rd~~------------------------------------------------- 77 (369)
T KOG0123|consen 48 ADAERALDTMNFDVLKGKPIRIMWS-QRDPS------------------------------------------------- 77 (369)
T ss_pred HHHHHHHHHcCCcccCCcEEEeehh-ccCCc-------------------------------------------------
Confidence 7999999999999999999999999 66644
Q ss_pred cccCCCcCCCcccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECC
Q 002920 82 ATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 161 (865)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s 161 (865)
.|||.||+.+++..+|+++|+.||.|+||++..+. +| ++|| ||+|.+
T Consensus 78 ---------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~----------~g-~kg~-FV~f~~ 124 (369)
T KOG0123|consen 78 ---------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE----------NG-SKGY-FVQFES 124 (369)
T ss_pred ---------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC----------CC-ceee-EEEeCC
Confidence 19999999999999999999999999999998883 45 9999 999999
Q ss_pred HHHHHHHHHHhcCCccCCeEEEEeccCCC--------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCC
Q 002920 162 VKSACASVALLHQKEIKGGTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 233 (865)
Q Consensus 162 ~e~A~~Al~~lng~~i~G~~i~v~~~~~~--------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~ 233 (865)
+++|.+|+..|||..+.|+.|++...... ......+.+||.|++.+++++.|..+|..+|.|.++.++.+.
T Consensus 125 e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~- 203 (369)
T KOG0123|consen 125 EESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS- 203 (369)
T ss_pred HHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-
Confidence 99999999999999999999998543221 123456789999999999999999999999999999999876
Q ss_pred CCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCC
Q 002920 234 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETAS 313 (865)
Q Consensus 234 tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 313 (865)
.|.++||+||.|.++++|..|+..|++..+.+..+.|..+..+..+.....
T Consensus 204 ~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~----------------------------- 254 (369)
T KOG0123|consen 204 IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELK----------------------------- 254 (369)
T ss_pred CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHh-----------------------------
Confidence 467999999999999999999999999999999999998865321110000
Q ss_pred CCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCC
Q 002920 314 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPK 393 (865)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~ 393 (865)
.+......
T Consensus 255 ------------------------~~~~~~~~------------------------------------------------ 262 (369)
T KOG0123|consen 255 ------------------------RKFEQEFA------------------------------------------------ 262 (369)
T ss_pred ------------------------hhhHhhhh------------------------------------------------
Confidence 00000000
Q ss_pred CccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 394 SLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 473 (865)
Q Consensus 394 ~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~ 473 (865)
.........+|||.||+..++.+.|+.+|+.||.|.+++|+.+. .|.++|||||+|.+.++|.+|+..+|
T Consensus 263 ----~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n----- 332 (369)
T KOG0123|consen 263 ----KRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMN----- 332 (369)
T ss_pred ----hccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhC-----
Confidence 00012345699999999999999999999999999999999885 78999999999999999999999999
Q ss_pred CeEecCeEEEEEEccCc
Q 002920 474 GIFLKGRQLTVLKALDK 490 (865)
Q Consensus 474 g~~l~Gr~L~V~~A~~k 490 (865)
|..+.|++|.|.++..+
T Consensus 333 ~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 333 GRLIGGKPLYVAVAQRK 349 (369)
T ss_pred hhhhcCCchhhhHHhhh
Confidence 99999999999998744
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=305.61 Aligned_cols=293 Identities=24% Similarity=0.298 Sum_probs=232.6
Q ss_pred ECCHHHHHHHHHHhcCCccCCeEEEEeccCC------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccC
Q 002920 159 YTTVKSACASVALLHQKEIKGGTVWARQLGG------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 232 (865)
Q Consensus 159 F~s~e~A~~Al~~lng~~i~G~~i~v~~~~~------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~ 232 (865)
..+.++|.+||..-.|..|.-. .--+..++ ...+...+-|||+.||.++.|++|.-+|...|.|.+++|++|+
T Consensus 41 ~~~~eaal~al~E~tgy~l~ve-~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~ 119 (506)
T KOG0117|consen 41 VQSEEAALKALLERTGYTLVVE-NGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP 119 (506)
T ss_pred cccHHHHHHHHHHhcCceEEEe-ccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecc
Confidence 3447888888876555433200 00011111 1234667899999999999999999999999999999999999
Q ss_pred CCCCccceEEEEECCHHHHHHHHHHhCCcee-CCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccC
Q 002920 233 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAET 311 (865)
Q Consensus 233 ~tg~~kG~afV~F~~~e~A~~Al~~lng~~i-~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (865)
.+|.++|||||.|.+.+.|+.||+.||+..| .|+.|.|+.+..
T Consensus 120 ~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva------------------------------------ 163 (506)
T KOG0117|consen 120 FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA------------------------------------ 163 (506)
T ss_pred cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee------------------------------------
Confidence 9999999999999999999999999999999 799999998632
Q ss_pred CCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCC
Q 002920 312 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK 391 (865)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~ 391 (865)
T Consensus 164 -------------------------------------------------------------------------------- 163 (506)
T KOG0117|consen 164 -------------------------------------------------------------------------------- 163 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecC-CCCCCCceEEEEeCCHHHHHHHHHHhcC
Q 002920 392 PKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQ-VTKRPKGTGFLKFKTVEAATAAVSASKT 469 (865)
Q Consensus 392 ~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~-V~sv~i~~d~-~~g~~kG~aFV~F~s~e~A~~Al~~ln~ 469 (865)
.|+|||+|||.++++++|.+.|++.+. |+.|.|...+ ...+++|||||+|.++..|..|-..|-.
T Consensus 164 -------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 164 -------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred -------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 369999999999999999999999876 6666554444 2457899999999999999999988762
Q ss_pred CCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcC
Q 002920 470 TSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ 549 (865)
Q Consensus 470 ~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~ 549 (865)
. .+.|.|+.+.|.||.+..+-..- .|.
T Consensus 231 g---~~klwgn~~tVdWAep~~e~ded------------------------------------~ms-------------- 257 (506)
T KOG0117|consen 231 G---KIKLWGNAITVDWAEPEEEPDED------------------------------------TMS-------------- 257 (506)
T ss_pred C---ceeecCCcceeeccCcccCCChh------------------------------------hhh--------------
Confidence 2 58899999999999877432100 000
Q ss_pred CCCCCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHH
Q 002920 550 SPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 629 (865)
Q Consensus 550 ~p~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~ 629 (865)
.-..|||+||+.++|++.|+++|.+ ||.|..|+.++| ||||.|.+.++|.+
T Consensus 258 ------~VKvLYVRNL~~~tTeE~lk~~F~~---------~G~veRVkk~rD--------------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 258 ------KVKVLYVRNLMESTTEETLKKLFNE---------FGKVERVKKPRD--------------YAFVHFAEREDAVK 308 (506)
T ss_pred ------heeeeeeeccchhhhHHHHHHHHHh---------ccceEEeecccc--------------eeEEeecchHHHHH
Confidence 1246999999999999999999994 999999988854 99999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEecccHHHHHHHHHHH
Q 002920 630 ALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKI 666 (865)
Q Consensus 630 Al~~lng~p~~fg~~~rliV~fA~e~~~~~~~~~~~~ 666 (865)
|+..|||. .+-| ..|-|-+|.--.++...|.+.+
T Consensus 309 Am~~~ngk-eldG--~~iEvtLAKP~~k~k~~r~~~~ 342 (506)
T KOG0117|consen 309 AMKETNGK-ELDG--SPIEVTLAKPVDKKKKERKAMR 342 (506)
T ss_pred HHHHhcCc-eecC--ceEEEEecCChhhhccchhhhh
Confidence 99999998 5555 3444999976544444443333
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.6e-33 Score=324.32 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=155.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...++|||+|||+.+++++|+++|..||.|.+|+|+.++. +|+++|||||+|.+.++|..|+..|||..|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---------TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---------CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 4567999999999999999999999999999999988854 7899999999999999999999999999999
Q ss_pred CeEEEEeccCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECC
Q 002920 179 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 247 (865)
Q Consensus 179 G~~i~v~~~~~~~-----------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~ 247 (865)
|+.|.|....... .....++|||+|||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999986543211 11245799999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 248 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 248 ~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
.++|..||..||+..|+|+.|+|.++.++.
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999998654
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.1e-34 Score=335.39 Aligned_cols=277 Identities=21% Similarity=0.231 Sum_probs=212.5
Q ss_pred cccCCCCEEEEcCCCCcccHHHHHHHhhcc------------CCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHH
Q 002920 96 QKQRVARTVIIGGLLNADMAEEVHRLAGSI------------GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 163 (865)
Q Consensus 96 ~~~~~~rtVfV~nLp~~~te~~L~~~F~~~------------G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e 163 (865)
...+..|+|||||||+.+|+++|+++|..| +.|..|.+ +..+|||||+|.+.+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------~~~kg~afVeF~~~e 234 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------NKEKNFAFLEFRTVE 234 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------CCCCCEEEEEeCCHH
Confidence 345678999999999999999999999975 24444444 456799999999999
Q ss_pred HHHHHHHHhcCCccCCeEEEEeccCCCC-----------------------------CCCCCcEEEEcCCCCCCCHHHHH
Q 002920 164 SACASVALLHQKEIKGGTVWARQLGGEG-----------------------------SKTQKWKLIIRNIPFKAKVNEIK 214 (865)
Q Consensus 164 ~A~~Al~~lng~~i~G~~i~v~~~~~~~-----------------------------~~~~~~~l~V~nLp~~~tee~L~ 214 (865)
+|..||. |||..|.|+.|.+....... .....++|||+|||+.+|+++|+
T Consensus 235 ~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~ 313 (509)
T TIGR01642 235 EATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIK 313 (509)
T ss_pred HHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 9999996 99999999999885422100 11235799999999999999999
Q ss_pred HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCC
Q 002920 215 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDG 294 (865)
Q Consensus 215 ~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~ 294 (865)
++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++............
T Consensus 314 ~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~--------- 384 (509)
T TIGR01642 314 ELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTS--------- 384 (509)
T ss_pred HHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccc---------
Confidence 99999999999999999889999999999999999999999999999999999999998543211000000
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhh
Q 002920 295 NSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVN 374 (865)
Q Consensus 295 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~ 374 (865)
....... . .+....
T Consensus 385 ----------------------------~~~~~~~-------------~-------~~~~~~------------------ 398 (509)
T TIGR01642 385 ----------------------------NGMAPVT-------------L-------LAKALS------------------ 398 (509)
T ss_pred ----------------------------ccccccc-------------c-------ccccch------------------
Confidence 0000000 0 000000
Q ss_pred hhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEEeecC---
Q 002920 375 ESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL----------DNEEVKQRFSAFGEVVSFVPVLHQ--- 441 (865)
Q Consensus 375 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~v----------teedL~e~Fs~fG~V~sv~i~~d~--- 441 (865)
..+ . .....+..+|+|.||.... ..++|+++|++||.|..|.|+.+.
T Consensus 399 --~~~-------------~-----~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~ 458 (509)
T TIGR01642 399 --QSI-------------L-----QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDR 458 (509)
T ss_pred --hhh-------------c-----cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCC
Confidence 000 0 0012235789999996421 236899999999999999998652
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEcc
Q 002920 442 VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 442 ~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~ 488 (865)
.++...|+|||+|.+.++|.+|+..|| |..|+|+.|.|.|..
T Consensus 459 ~~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 459 NSTPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYG 500 (509)
T ss_pred CcCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeC
Confidence 345668999999999999999999999 999999999999975
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=312.57 Aligned_cols=338 Identities=23% Similarity=0.314 Sum_probs=230.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
.+|||++||+.++.++|.++|+.+|+|..|.++.+..++.++|||||.|.-.+++++|+..+++..|.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 69999999999999999999999999999999999988899999999999999999999999999999999999999766
Q ss_pred CccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCc
Q 002920 277 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 356 (865)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~ 356 (865)
......... . +. .....+.
T Consensus 86 ~r~e~~~~~-----------e-------------------------~~---------------~veK~~~---------- 104 (678)
T KOG0127|consen 86 ARSEEVEKG-----------E-------------------------NK---------------AVEKPIE---------- 104 (678)
T ss_pred ccchhcccc-----------c-------------------------ch---------------hhhcccc----------
Confidence 422100000 0 00 0000000
Q ss_pred chhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccC-CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 002920 357 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTE-GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 435 (865)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~-~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv 435 (865)
+.++.. ....+...|.|+||||.+...+|..+|+.||.|..|
T Consensus 105 -------------------------------------q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 105 -------------------------------------QKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred -------------------------------------cCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 000000 011224589999999999999999999999999999
Q ss_pred EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhh------hhhc--ccc---
Q 002920 436 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE------IDKS--KNE--- 504 (865)
Q Consensus 436 ~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~------~~~~--~~~--- 504 (865)
.|++.. .|...|||||+|....+|..||+.+| |..|+||+|.|.||+++....... +.+. ..+
T Consensus 148 ~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N-----~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 148 VIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFN-----GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred EcccCC-CCCccceEEEEEeeHHHHHHHHHhcc-----CceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 999776 45556999999999999999999999 999999999999999986543311 1110 000
Q ss_pred -cccccchhhhcccccc-------CC---------CCCCCCCCchhHHHHHHHHHHhhhhcCC-CCCCCccCeEEEeCCC
Q 002920 505 -TNDHRNLYLAKEGLIL-------EG---------TPAAEGVSDDDMSKRQMLHEKKMTKLQS-PNFHVSRTRLVIYNLP 566 (865)
Q Consensus 505 -~~d~~~l~l~~~g~i~-------~~---------s~~~~~~s~~~~~~r~~~~~~~~~~l~~-p~~~~s~~~L~V~NLP 566 (865)
+.+..+-.....|... .+ ......-...+.+........+...... +....-..+|||+|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 1111010000000000 00 0000000000000000000000000000 1111112689999999
Q ss_pred ccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhc---CCCCCCCC
Q 002920 567 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN---NNPKTFGP 643 (865)
Q Consensus 567 ~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~ln---g~p~~fg~ 643 (865)
+++|+++|..+|+ +||.|.++.|+.++.|+ +++|+|||.|.+..+|..||.+.. +--.+...
T Consensus 302 fD~tEEel~~~fs---------kFG~v~ya~iV~~k~T~------~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 302 FDTTEEELKEHFS---------KFGEVKYAIIVKDKDTG------HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccHHHHHHHHH---------hhccceeEEEEeccCCC------CcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 9999999999999 59999999999999887 999999999999999999999883 21102222
Q ss_pred CCceEEEEec
Q 002920 644 EHRPIVEFAV 653 (865)
Q Consensus 644 ~~rliV~fA~ 653 (865)
|+-|.|..|+
T Consensus 367 GR~Lkv~~Av 376 (678)
T KOG0127|consen 367 GRLLKVTLAV 376 (678)
T ss_pred ccEEeeeecc
Confidence 3444499886
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=8.9e-35 Score=324.98 Aligned_cols=381 Identities=22% Similarity=0.350 Sum_probs=266.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
.....|||+||||..++++|+.+| |||.|..++.|.+|...|+|+.+.
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf--------------------------------a~v~~~~~~~avka~~~~D~k~fq 272 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF--------------------------------AFVTFMFPEHAVKAYSELDGKVFQ 272 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh--------------------------------HHHhhhhhHHHHhhhhhccccccc
Confidence 346789999999999999999988 578888888888888888888888
Q ss_pred CeEEEEeccCCC---------------------------------------------------------------C----
Q 002920 179 GGTVWARQLGGE---------------------------------------------------------------G---- 191 (865)
Q Consensus 179 G~~i~v~~~~~~---------------------------------------------------------------~---- 191 (865)
|+.|.+.+.... +
T Consensus 273 grmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr 352 (725)
T KOG0110|consen 273 GRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVR 352 (725)
T ss_pred cceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHH
Confidence 887764321000 0
Q ss_pred ----------------------------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEE
Q 002920 192 ----------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 243 (865)
Q Consensus 192 ----------------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV 243 (865)
.....+.|+|+|||..+..++|..+|..||.|..|.++. .|. -|+|
T Consensus 353 ~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv 426 (725)
T KOG0110|consen 353 LALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIV 426 (725)
T ss_pred HHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeee
Confidence 011247899999999999999999999999999996652 232 2999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccC
Q 002920 244 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKED 323 (865)
Q Consensus 244 ~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 323 (865)
.|.++.+|..|+..|....+...++++.|+... .+........-.+..... ............
T Consensus 427 ~fl~p~eAr~Afrklaysr~k~~plyle~aP~d-vf~~~pka~~~~~e~~~~------~ee~~~Er~s~~---------- 489 (725)
T KOG0110|consen 427 EFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED-VFTEDPKADDLSAESRSK------MEENPSERVSAE---------- 489 (725)
T ss_pred eecCccchHHHHHHhchhhhccCccccccChhh-hccCCccccccccccccc------cccCcceecccc----------
Confidence 999999999999999999999999999998432 221111000000000000 000000000000
Q ss_pred CCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCC
Q 002920 324 LPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDE 403 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~ 403 (865)
.+.+....+.. +.. .+..+ .....
T Consensus 490 ------------------------d~~v~eD~d~t------e~s----------s~a~~----------------a~~~~ 513 (725)
T KOG0110|consen 490 ------------------------DGQVEEDKDPT------EES----------SLARV----------------AEDEE 513 (725)
T ss_pred ------------------------cccccccCCcc------ccc----------cchhh----------------hhccc
Confidence 00000000000 000 00000 00111
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCC---CCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK---RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g---~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
..+.|||+||++++|.++|..+|..+|.|.+|.|...+... .+.|||||+|.++++|+.|+..|+ |+.|+|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtvldGH 588 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTVLDGH 588 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-----CceecCc
Confidence 12349999999999999999999999999999887665321 356999999999999999999999 9999999
Q ss_pred EEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeE
Q 002920 481 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 560 (865)
Q Consensus 481 ~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L 560 (865)
.|.|.++..+...... + ...... ..+.|
T Consensus 589 ~l~lk~S~~k~~~~~g---K---------------------------------------------~~~~kk----~~tKI 616 (725)
T KOG0110|consen 589 KLELKISENKPASTVG---K---------------------------------------------KKSKKK----KGTKI 616 (725)
T ss_pred eEEEEeccCccccccc---c---------------------------------------------cccccc----cccee
Confidence 9999998733211100 0 000000 13789
Q ss_pred EEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 561 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT 640 (865)
Q Consensus 561 ~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~ 640 (865)
+|+|||+..+-.+++.||. +||.|.+|+|+.... .+-++|||||+|.++.+|.+|+.+|.+. |+
T Consensus 617 lVRNipFeAt~rEVr~LF~---------aFGqlksvRlPKK~~------k~a~rGF~Fv~f~t~~ea~nA~~al~ST-Hl 680 (725)
T KOG0110|consen 617 LVRNIPFEATKREVRKLFT---------AFGQLKSVRLPKKIG------KGAHRGFGFVDFLTPREAKNAFDALGST-HL 680 (725)
T ss_pred eeeccchHHHHHHHHHHHh---------cccceeeeccchhhc------chhhccceeeeccCcHHHHHHHHhhccc-ce
Confidence 9999999999999999999 699999999997532 3367999999999999999999999954 89
Q ss_pred CCCCCceEEEEecccHHHHHHHHHH
Q 002920 641 FGPEHRPIVEFAVDNVQTLKQRNAK 665 (865)
Q Consensus 641 fg~~~rliV~fA~e~~~~~~~~~~~ 665 (865)
|| +||+++||..+.-+...|+..
T Consensus 681 yG--RrLVLEwA~~d~~~e~~r~r~ 703 (725)
T KOG0110|consen 681 YG--RRLVLEWAKSDNTMEALRERT 703 (725)
T ss_pred ec--hhhheehhccchHHHHHHHHH
Confidence 98 999999998876544444433
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.2e-32 Score=319.20 Aligned_cols=310 Identities=19% Similarity=0.239 Sum_probs=211.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCC------------CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV------------GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~------------G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
.....++|||+|||+.+|+++|.++|..| +.|..+.+ +..+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567899999999999999999999964 34555554 3357999999999999999995 99
Q ss_pred CceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHH
Q 002920 260 GQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 339 (865)
Q Consensus 260 g~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (865)
|..|.|++|.|.+............ .. .. ..+....
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~--------~~-~~--------------------------~~~~~~~--------- 279 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITP--------EV-SQ--------------------------KNPDDNA--------- 279 (509)
T ss_pred CeEeeCceeEecCccccCCccccCC--------CC-CC--------------------------CCCcccc---------
Confidence 9999999999975432210000000 00 00 0000000
Q ss_pred HhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCH
Q 002920 340 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDN 419 (865)
Q Consensus 340 ~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vte 419 (865)
. .... ...........++|||+|||+.+|+
T Consensus 280 ------~----------------------------------~~~~----------~~~~~~~~~~~~~l~v~nlp~~~~~ 309 (509)
T TIGR01642 280 ------K----------------------------------NVEK----------LVNSTTVLDSKDRIYIGNLPLYLGE 309 (509)
T ss_pred ------c----------------------------------cccc----------ccccccCCCCCCEEEEeCCCCCCCH
Confidence 0 0000 0000001123479999999999999
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhh
Q 002920 420 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEID 499 (865)
Q Consensus 420 edL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~ 499 (865)
++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|| |+.|+|+.|.|.+|..........
T Consensus 310 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-----g~~~~~~~l~v~~a~~~~~~~~~~-- 382 (509)
T TIGR01642 310 DQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-----GKDTGDNKLHVQRACVGANQATID-- 382 (509)
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECccCCCCCCcc--
Confidence 9999999999999999999998899999999999999999999999999 999999999999986432111000
Q ss_pred hcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCcc--C--------
Q 002920 500 KSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS--M-------- 569 (865)
Q Consensus 500 ~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~--v-------- 569 (865)
..+ +.. +.......+.. . .+. ....+..+|+|.||... +
T Consensus 383 --------~~~------~~~-~~~~~~~~~~~-----------~---~~~--~~~~~s~v~~l~N~~~~~~l~~d~~~~~ 431 (509)
T TIGR01642 383 --------TSN------GMA-PVTLLAKALSQ-----------S---ILQ--IGGKPTKVVQLTNLVTGDDLMDDEEYEE 431 (509)
T ss_pred --------ccc------ccc-ccccccccchh-----------h---hcc--ccCCCceEEEeccCCchhHhcCcchHHH
Confidence 000 000 00000000000 0 000 01123568999999532 1
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEE
Q 002920 570 TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIV 649 (865)
Q Consensus 570 tee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV 649 (865)
..++|+++|. .||.|..|.|+++.... ..+.+.|+|||+|.++++|..||..|||. +|+ ++.|+|
T Consensus 432 ~~edl~~~f~---------~~G~v~~v~i~~~~~~~---~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~-gr~v~~ 496 (509)
T TIGR01642 432 IYEDVKTEFS---------KYGPLINIVIPRPNGDR---NSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFN-DRVVVA 496 (509)
T ss_pred HHHHHHHHHH---------hcCCeeEEEeeccCcCC---CcCCCcceEEEEECCHHHHHHHHHHcCCC--EEC-CeEEEE
Confidence 1256778887 49999999999753221 22357899999999999999999999998 676 577779
Q ss_pred EEeccc
Q 002920 650 EFAVDN 655 (865)
Q Consensus 650 ~fA~e~ 655 (865)
.|..++
T Consensus 497 ~~~~~~ 502 (509)
T TIGR01642 497 AFYGED 502 (509)
T ss_pred EEeCHH
Confidence 999754
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=289.04 Aligned_cols=378 Identities=21% Similarity=0.306 Sum_probs=241.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC-cc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EI 177 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~-~i 177 (865)
.+.-.+|||.||..++|.||+.+|++||.|.+|.|++|+. +|.++|||||.|.+.++|.+|+.+||+. .|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~---------t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS---------TGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc---------cCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 4456799999999999999999999999999999999974 8899999999999999999999999765 56
Q ss_pred CCe--EEEEeccCCCCCC-CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHH
Q 002920 178 KGG--TVWARQLGGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254 (865)
Q Consensus 178 ~G~--~i~v~~~~~~~~~-~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~A 254 (865)
.|. +|.|+....+... ...++|||+-|+..+||.+|+++|++||.|++|.|+++. .|.++|||||.|.+.+-|..|
T Consensus 103 pG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred CCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHH
Confidence 665 5556655444322 357899999999999999999999999999999999987 589999999999999999999
Q ss_pred HHHhCCce-e--CCeeEEEEecCCCCccCCCCc-----------ccC--cCCCC------CC-----C---CCCCCCCCC
Q 002920 255 IQKFNGQK-F--GKRPIAVDWAVPKNIYSSGGA-----------AAG--VQNKG------DG-----N---SDSGSDDDL 304 (865)
Q Consensus 255 l~~lng~~-i--~gr~l~V~~a~~k~~~~~~~~-----------~~~--~~~~~------~~-----~---~~~~~~~~~ 304 (865)
|+.|||.. + ...+|.|.|+.+++....... ..+ ..+.. .. . .........
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~ 261 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG 261 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc
Confidence 99999976 4 457899999988765432110 000 00000 00 0 000000000
Q ss_pred CCCcccC----------------------CCCCCC-------CccccCCC------CCCCch-----hHHHHHHHHhhhc
Q 002920 305 GDDDAET----------------------ASDDSN-------SSEKEDLP------SNADFD-----EEVDIARKVLNKL 344 (865)
Q Consensus 305 ~~~~~g~----------------------~~~~~~-------~~~~~~~~------~~~~~~-----~~~~~~~~~l~~~ 344 (865)
+--..++ ..+... .....-.+ ...... -..-.++..+...
T Consensus 262 g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t 341 (510)
T KOG0144|consen 262 GLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGT 341 (510)
T ss_pred cccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCC
Confidence 0000000 000000 00000000 000000 0000111111111
Q ss_pred ccCCC---CC-----CCCCcchhh---hcCCCCCCchhhhhhhcccccc-------ccccCCC----CCCCCccccCCCC
Q 002920 345 TSTTG---SL-----PSLSDDSAL---VKGNKEQDSDKTVNESAKVSDV-------SKLNSSK----SKPKSLKQTEGED 402 (865)
Q Consensus 345 ~~~~G---~~-----ps~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~p~~s~~----~~~~~~~~~~~~~ 402 (865)
...++ .+ ++....... ..+............-+.+.+. .|-..+. +.....-....++
T Consensus 342 ~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eG 421 (510)
T KOG0144|consen 342 PANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEG 421 (510)
T ss_pred chhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccC
Confidence 00011 00 000000000 0000000000000000000000 0000000 0000001112366
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
+.+.+|||++||.+.-+.+|...|..||.|.+.++..|+.|+-+++|+||.|++..+|..||..|| |+.|++++|
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn-----gfQig~Krl 496 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN-----GFQIGSKRL 496 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc-----chhhccccc
Confidence 778999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|....++.
T Consensus 497 kVQlk~~~~ 505 (510)
T KOG0144|consen 497 KVQLKRDRN 505 (510)
T ss_pred eEEeeeccC
Confidence 999977653
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-32 Score=272.28 Aligned_cols=233 Identities=25% Similarity=0.433 Sum_probs=191.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...|||||+||..++||+-|..||+..|.|.+++|+.+.. .
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-------------------------------~-------- 44 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-------------------------------K-------- 44 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-------------------------------c--------
Confidence 4679999999999999999999999999999999965411 0
Q ss_pred CeEEEEeccCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHH
Q 002920 179 GGTVWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256 (865)
Q Consensus 179 G~~i~v~~~~~~--~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~ 256 (865)
.+|....+.. ........|||+.|...++-+.|++.|.+||+|.+++|++|..|++++|||||.|...++|+.||.
T Consensus 45 --v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~ 122 (321)
T KOG0148|consen 45 --VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQ 122 (321)
T ss_pred --cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHH
Confidence 2222111111 112235679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHH
Q 002920 257 KFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDI 336 (865)
Q Consensus 257 ~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (865)
.|||..|++|.|+-.|+..+.... +.. ...|++
T Consensus 123 ~MnGqWlG~R~IRTNWATRKp~e~------------------------------------------n~~-~ltfde---- 155 (321)
T KOG0148|consen 123 QMNGQWLGRRTIRTNWATRKPSEM------------------------------------------NGK-PLTFDE---- 155 (321)
T ss_pred HhCCeeeccceeeccccccCcccc------------------------------------------CCC-CccHHH----
Confidence 999999999999999998765100 000 000100
Q ss_pred HHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCC
Q 002920 337 ARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFD 416 (865)
Q Consensus 337 ~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~ 416 (865)
++ ++ ..+.+|+|||+||+..
T Consensus 156 -------V~----------------------------------NQ-------------------ssp~NtsVY~G~I~~~ 175 (321)
T KOG0148|consen 156 -------VY----------------------------------NQ-------------------SSPDNTSVYVGNIASG 175 (321)
T ss_pred -------Hh----------------------------------cc-------------------CCCCCceEEeCCcCcc
Confidence 00 00 2334689999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 417 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 417 vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
+|+++|++.|++||.|.+|+|..+ +||+||.|.+.|+|..||..|| +..|+|..++|.|....
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mN-----ntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMN-----NTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhc-----CceeCceEEEEeccccC
Confidence 999999999999999999999866 6999999999999999999999 99999999999997654
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=259.98 Aligned_cols=176 Identities=23% Similarity=0.355 Sum_probs=148.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
-.|||+.|..+++.++|++.|.+||.|..++|++|..|++++|||||.|-+.++|++||..|| |.+|++|.|+-.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-----GqWlG~R~IRTN 137 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-----GQWLGRRTIRTN 137 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-----Ceeeccceeecc
Confidence 369999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCC
Q 002920 486 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL 565 (865)
Q Consensus 486 ~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NL 565 (865)
||..|....... .++-. .... .. ....|+|||+||
T Consensus 138 WATRKp~e~n~~------------------------------~ltfd----------eV~N-Qs----sp~NtsVY~G~I 172 (321)
T KOG0148|consen 138 WATRKPSEMNGK------------------------------PLTFD----------EVYN-QS----SPDNTSVYVGNI 172 (321)
T ss_pred ccccCccccCCC------------------------------CccHH----------HHhc-cC----CCCCceEEeCCc
Confidence 998775221100 00000 0000 01 113589999999
Q ss_pred CccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 002920 566 PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 645 (865)
Q Consensus 566 P~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~ 645 (865)
+..+||++|+++|+ +||.|..|+|.++ +||+||.|.++|.|..||..|||. ++-|
T Consensus 173 ~~~lte~~mr~~Fs---------~fG~I~EVRvFk~------------qGYaFVrF~tkEaAahAIv~mNnt-ei~G--- 227 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFS---------PFGPIQEVRVFKD------------QGYAFVRFETKEAAAHAIVQMNNT-EIGG--- 227 (321)
T ss_pred CccccHHHHHHhcc---------cCCcceEEEEecc------------cceEEEEecchhhHHHHHHHhcCc-eeCc---
Confidence 99999999999999 7999999999976 899999999999999999999997 4544
Q ss_pred ceE-EEEecccH
Q 002920 646 RPI-VEFAVDNV 656 (865)
Q Consensus 646 rli-V~fA~e~~ 656 (865)
.++ +.|..++.
T Consensus 228 ~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 228 QLVRCSWGKEGD 239 (321)
T ss_pred eEEEEeccccCC
Confidence 555 99997654
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=272.00 Aligned_cols=173 Identities=28% Similarity=0.423 Sum_probs=150.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee---CCeeEEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIAV 270 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i---~gr~l~V 270 (865)
...-++||+-+|..|+|.+|+++|++||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+.+||+... ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4556899999999999999999999999999999999999999999999999999999999999998764 4577888
Q ss_pred EecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002920 271 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 350 (865)
Q Consensus 271 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~ 350 (865)
.++.....
T Consensus 112 k~Ad~E~e------------------------------------------------------------------------ 119 (510)
T KOG0144|consen 112 KYADGERE------------------------------------------------------------------------ 119 (510)
T ss_pred cccchhhh------------------------------------------------------------------------
Confidence 88732110
Q ss_pred CCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC
Q 002920 351 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 430 (865)
Q Consensus 351 ~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG 430 (865)
.-...+.|||+-|+..+||.+|+++|++||
T Consensus 120 --------------------------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 120 --------------------------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRFG 149 (510)
T ss_pred --------------------------------------------------ccccchhhhhhhccccccHHHHHHHHHhhC
Confidence 001236899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCC-eEecC--eEEEEEEccCchhhh
Q 002920 431 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG-IFLKG--RQLTVLKALDKKLAH 494 (865)
Q Consensus 431 ~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g-~~l~G--r~L~V~~A~~k~~~~ 494 (865)
.|.+|.|++|. .+.++|||||+|.+.+.|..||++|| | ..+.| .+|.|.||.++....
T Consensus 150 ~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n-----g~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 150 HIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN-----GTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc-----cceeeccCCCceEEEecccCCCch
Confidence 99999999996 78999999999999999999999999 5 44554 699999999876553
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.9e-28 Score=269.78 Aligned_cols=171 Identities=26% Similarity=0.473 Sum_probs=155.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.|..+++++|||||+|.+.++|+.||..||+..|.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 9753210
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 431 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~ 431 (865)
....++|||.|||..+|+++|+++|++||.
T Consensus 190 --------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 190 --------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred --------------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 001258999999999999999999999999
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEEEEEEccCc
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDK 490 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L~V~~A~~k 490 (865)
|..|+|+.+..++.++|||||+|.+.++|.+||+.|| +..|.| ++|.|.+|...
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCcc
Confidence 9999999999899999999999999999999999999 888865 79999998765
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.8e-28 Score=268.40 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=155.9
Q ss_pred cCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 98 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+.. +|+++|||||+|.++++|++||..||+..|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~---------tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l 174 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK---------TGYSFGYAFVDFGSEADSQRAIKNLNGITV 174 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCccCcEEEEEEccHHHHHHHHHHcCCCcc
Confidence 34678999999999999999999999999999999988754 789999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHH
Q 002920 178 KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257 (865)
Q Consensus 178 ~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ 257 (865)
.++.|.|............++|||+|||+.+|+++|+++|+.||.|..|.|+++..+|.++|||||+|.+.++|++||..
T Consensus 175 ~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 175 RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred CCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 99999987654433445677899999999999999999999999999999999998999999999999999999999999
Q ss_pred hCCceeCC--eeEEEEecCCCC
Q 002920 258 FNGQKFGK--RPIAVDWAVPKN 277 (865)
Q Consensus 258 lng~~i~g--r~l~V~~a~~k~ 277 (865)
||+..+.+ ++|.|.++....
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred hCCCccCCCceeEEEEECCccc
Confidence 99999865 789999987653
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=272.02 Aligned_cols=180 Identities=26% Similarity=0.439 Sum_probs=155.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|..||.|.+|.|+.|+.+|+++|||||+|.+.++|..||..|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
...... .... .+.
T Consensus 186 ~~p~a~---------------------------------------------~~~~--------------~~~-------- 198 (612)
T TIGR01645 186 NMPQAQ---------------------------------------------PIID--------------MVQ-------- 198 (612)
T ss_pred cccccc---------------------------------------------cccc--------------ccc--------
Confidence 211000 0000 000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
......++|||+|||+++++++|+++|+.||.|.+
T Consensus 199 ---------------------------------------------~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 199 ---------------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred ---------------------------------------------ccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE
Confidence 01112368999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
|+|+.+..++.++|||||+|.+.++|.+|+..|| |+.|+|+.|.|.++....
T Consensus 234 vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-----g~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 234 CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEEEecCCCc
Confidence 9999999899999999999999999999999999 999999999999998643
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=4.7e-27 Score=257.23 Aligned_cols=330 Identities=23% Similarity=0.308 Sum_probs=225.9
Q ss_pred cccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhc
Q 002920 94 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 173 (865)
Q Consensus 94 ~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~ln 173 (865)
....+++.||||+-.|+-.++..+|.+||+.+|.|..|+++.++. .++++|.|||+|.+.+++..||. |.
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---------s~rskgi~Yvef~D~~sVp~aia-Ls 241 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---------SRRSKGIAYVEFCDEQSVPLAIA-LS 241 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---------chhhcceeEEEEecccchhhHhh-hc
Confidence 345568999999999999999999999999999999999999864 78899999999999999999997 99
Q ss_pred CCccCCeEEEEeccCC--------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccc
Q 002920 174 QKEIKGGTVWARQLGG--------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKG 239 (865)
Q Consensus 174 g~~i~G~~i~v~~~~~--------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG 239 (865)
|..+.|-+|.|..... .+...+...|||+||.+++++++|+.+|++||.|..|.++.|.+||.++|
T Consensus 242 Gqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skg 321 (549)
T KOG0147|consen 242 GQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKG 321 (549)
T ss_pred CCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccC
Confidence 9999999999865311 11123344599999999999999999999999999999999999999999
Q ss_pred eEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 002920 240 FAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSS 319 (865)
Q Consensus 240 ~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 319 (865)
||||+|.+.++|.+|+..|||..|.|+.|+|......-...... ....+ .|++ +.++.+..
T Consensus 322 fGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~---------~~~~d--~D~~----d~~gl~~~---- 382 (549)
T KOG0147|consen 322 FGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAA---------VTQFD--FDED----DRQGLSLG---- 382 (549)
T ss_pred cceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccc---------ccccc--cchh----hccccccc----
Confidence 99999999999999999999999999999998764332111000 00000 0000 00000000
Q ss_pred cccCCCCCCCchhHHHHHHHHhhhcccCCC-CCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCcccc
Q 002920 320 EKEDLPSNADFDEEVDIARKVLNKLTSTTG-SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQT 398 (865)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~ 398 (865)
.-. .. +.+..++...| .+|+............... ...........+.|.. . .
T Consensus 383 ---------~~g-~~----Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~--~~~~~~~~~~~~~p~~--------~--~ 436 (549)
T KOG0147|consen 383 ---------SGG-RN----QLMAKLAEGKGRSLPSTAISALLLLAKLASA--AQFNGVVRVRSVDPAD--------A--S 436 (549)
T ss_pred ---------ccc-HH----HHHHHHhccCCccccchhhhHHHhccccchH--HhhcCCcCccccCccc--------c--c
Confidence 000 00 11111111111 1222211111111000000 0000000000011100 0 1
Q ss_pred CCCCCCCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 399 EGEDELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 399 ~~~~~~~~tLfV~NL--P~~vt--------eedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
+.-..++.|+.|+|+ |.+.| .++|.+-+.+||.|..|.|. + .+-|+.||.|.+.+.|..|+.+||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd--~---ns~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVD--K---NSAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEc--c---CCCceEEEecCcHHHHHHHHHHHh
Confidence 112245678999998 33332 37888999999999887663 2 245999999999999999999999
Q ss_pred CCCCCCeEecCeEEEEEEcc
Q 002920 469 TTSGLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 469 ~~~~~g~~l~Gr~L~V~~A~ 488 (865)
|.+|.||.|.+.|-.
T Consensus 512 -----grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 -----GRWFAGRMITAKYLP 526 (549)
T ss_pred -----hhhhccceeEEEEee
Confidence 999999999999953
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=7.7e-26 Score=234.04 Aligned_cols=178 Identities=26% Similarity=0.487 Sum_probs=153.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+.+.+.+.|+.|+..|.+||+|.+|.+..|+.|++++|||||+|+-+|.|..|++.|||..++||.|.|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred CCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002920 276 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 355 (865)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~ 355 (865)
++... .++..+-.
T Consensus 193 ------------------------------------------------mpQAQ----------piID~vqe--------- 205 (544)
T KOG0124|consen 193 ------------------------------------------------MPQAQ----------PIIDMVQE--------- 205 (544)
T ss_pred ------------------------------------------------Ccccc----------hHHHHHHH---------
Confidence 11100 00000000
Q ss_pred cchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 002920 356 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 435 (865)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv 435 (865)
+...-.+|||..+.++.+++||+.+|+.||.|.+|
T Consensus 206 ---------------------------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 206 ---------------------------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred ---------------------------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 01112589999999999999999999999999999
Q ss_pred EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 436 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 436 ~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
.+.+++..+.++|||||+|.+..+...|+..|| -+.|+|..|+|..+...
T Consensus 241 ~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-----lFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 241 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTP 290 (544)
T ss_pred EeeccCCCCCccceeeEEeccccchHHHhhhcc-----hhhcccceEecccccCC
Confidence 999999888999999999999999999999999 89999999999987654
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=2.1e-27 Score=260.05 Aligned_cols=328 Identities=20% Similarity=0.299 Sum_probs=234.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++||+-.|+..+++-+|.++|+.+|.|..|+|+.|..++.++|.|||+|.+.+....||. |.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 35789999999999999999999999999999999999999999999999999999999996 89999999999998753
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
..... ..++..
T Consensus 257 aeknr-------------------------------------------------------------~a~~s~-------- 267 (549)
T KOG0147|consen 257 AEKNR-------------------------------------------------------------AANASP-------- 267 (549)
T ss_pred HHHHH-------------------------------------------------------------HHhccc--------
Confidence 21100 000000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
...+ .+-..+-..|||+||.+++++++|+.+|.+||.|..
T Consensus 268 ------------------------------a~~~----------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~ 307 (549)
T KOG0147|consen 268 ------------------------------ALQG----------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN 307 (549)
T ss_pred ------------------------------cccc----------cccccchhhhhhcccccCchHHHHhhhccCccccee
Confidence 0000 000111233999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhh
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLA 514 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~ 514 (865)
|.+++|..||.++|||||+|.+.++|.+|+..|| |+.|-||.|.|.....+-...............+...+.+.
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln-----gfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~ 382 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQLN-----GFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLG 382 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHHhc-----cceecCceEEEEEeeeecccccccccccccchhhccccccc
Confidence 9999999999999999999999999999999999 99999999999886654332211000000000011222111
Q ss_pred ccc------cccCCCCCC---------CCCCchhHHHHHHH---HHHhhhhcCCCCCCCccCeEEEeCC--CccCCHHHH
Q 002920 515 KEG------LILEGTPAA---------EGVSDDDMSKRQML---HEKKMTKLQSPNFHVSRTRLVIYNL--PKSMTEKGL 574 (865)
Q Consensus 515 ~~g------~i~~~s~~~---------~~~s~~~~~~r~~~---~~~~~~~l~~p~~~~s~~~L~V~NL--P~~vtee~L 574 (865)
..| ...++.... ..+...+....... .......-..|.+.++..++.++|| |.+.|+..+
T Consensus 383 ~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~ 462 (549)
T KOG0147|consen 383 SGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNW 462 (549)
T ss_pred cccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcch
Confidence 111 001111100 00000000000000 0000001113556677788999999 888899888
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceE-EEEec
Q 002920 575 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPI-VEFAV 653 (865)
Q Consensus 575 ~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rli-V~fA~ 653 (865)
..-+.+.|++.|.+ ||.|..|.+-. .+-|+.||.|.+.+.|..|+.+|||. ||+ +++| ..|-.
T Consensus 463 d~eI~edV~Eec~k-~g~v~hi~vd~-----------ns~g~VYvrc~s~~~A~~a~~alhgr--WF~--gr~Ita~~~~ 526 (549)
T KOG0147|consen 463 DQEIREDVIEECGK-HGKVCHIFVDK-----------NSAGCVYVRCPSAEAAGTAVKALHGR--WFA--GRMITAKYLP 526 (549)
T ss_pred hhHHHHHHHHHHHh-cCCeeEEEEcc-----------CCCceEEEecCcHHHHHHHHHHHhhh--hhc--cceeEEEEee
Confidence 88888899999986 99998887764 34599999999999999999999998 998 6777 88764
No 33
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=9.2e-25 Score=230.03 Aligned_cols=416 Identities=20% Similarity=0.283 Sum_probs=267.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcC--Cc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ--KE 176 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng--~~ 176 (865)
.+++-|.++|||++++|.+|..++..||.|..+.+.. |.+ -|||+|.++++|..-+..+.. -.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-------------Gkn--QAflem~d~~sAvtmv~~y~~~~p~ 90 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-------------GKN--QAFLEMADEESAVTMVNYYTSVTPV 90 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeec-------------cch--hhhhhhcchhhhhheeecccccCcc
Confidence 5678999999999999999999999999999998843 333 599999999998763332111 12
Q ss_pred cCCeEEEEecc----------------------------------------CCCCCCCCCcEEEEcCCCCCCCHHHHHHh
Q 002920 177 IKGGTVWARQL----------------------------------------GGEGSKTQKWKLIIRNIPFKAKVNEIKDM 216 (865)
Q Consensus 177 i~G~~i~v~~~----------------------------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~ 216 (865)
+.|++|++..+ +....+..--+++|.|+-+.++-+-|+.+
T Consensus 91 lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 91 LRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred ccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 44555543210 00111223357889999999999999999
Q ss_pred hcCCCceEEEEEcccCCCCCccce-EEEEECCHHHHHHHHHHhCCcee--CCeeEEEEecCCCCccCCCCcccCcCCCCC
Q 002920 217 FSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGD 293 (865)
Q Consensus 217 F~~~G~I~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~lng~~i--~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~ 293 (865)
|+.||.|..|.-... +-|| |.|+|.+.+.|..|-..|+|..| +.+.|+|+++.-......+..
T Consensus 171 FS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynn--------- 236 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNN--------- 236 (492)
T ss_pred HhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccc---------
Confidence 999999988765442 2233 99999999999999999999998 668899998865443322221
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcc-cCCCCCCCCCcchhhhcCCCCCCchhh
Q 002920 294 GNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLT-STTGSLPSLSDDSALVKGNKEQDSDKT 372 (865)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~~ps~~~~~~~~~~~~~~~~~~~ 372 (865)
+++.|...-.-..|+ .+. .+..++ ..+++.|-... .|.+....
T Consensus 237 ---dkSRDyTnp~LP~gd---------------------~~p----~l~~~~~aa~~~~~~~~g---~p~aip~~----- 280 (492)
T KOG1190|consen 237 ---DKSRDYTNPDLPVGD---------------------GQP----SLDQLMAAAFGSVPAVHG---APLAIPSG----- 280 (492)
T ss_pred ---cccccccCCCCCCCc---------------------ccc----ccchhhhccccccccccC---CcccCCcc-----
Confidence 000000000000000 000 000000 01111111000 00000000
Q ss_pred hhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEE
Q 002920 373 VNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP-FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGF 451 (865)
Q Consensus 373 ~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP-~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aF 451 (865)
...... .. ... .....++.|.|.||. ..+|.+-|..+|+.||.|..|+|+..+ +.-|+
T Consensus 281 ---------~~~a~~-----a~-~~~-~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~AL 339 (492)
T KOG1190|consen 281 ---------AAGANA-----AD-GKI-ESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNAL 339 (492)
T ss_pred ---------chhhcc-----cc-ccc-ccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Cccee
Confidence 000000 00 000 000025789999985 558999999999999999999998765 36799
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCc
Q 002920 452 LKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSD 531 (865)
Q Consensus 452 V~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~ 531 (865)
|.|.+...|+-|+..|+ |..+.|++|+|.+..- .++.+..+|.-..|..-.. ..
T Consensus 340 IQmsd~~qAqLA~~hL~-----g~~l~gk~lrvt~SKH-------------------~~vqlp~egq~d~glT~dy--~~ 393 (492)
T KOG1190|consen 340 IQMSDGQQAQLAMEHLE-----GHKLYGKKLRVTLSKH-------------------TNVQLPREGQEDQGLTKDY--GN 393 (492)
T ss_pred eeecchhHHHHHHHHhh-----cceecCceEEEeeccC-------------------ccccCCCCCCccccccccC--CC
Confidence 99999999999999999 9999999999999642 2233333332211111110 11
Q ss_pred hhHHHHHHHHHHhhhhcCCC-CCCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCC
Q 002920 532 DDMSKRQMLHEKKMTKLQSP-NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTK 610 (865)
Q Consensus 532 ~~~~~r~~~~~~~~~~l~~p-~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~ 610 (865)
+.+. ..++...+++ ++..+..+|++.|||.+++|++|+.+|.+ +-|.|...++..
T Consensus 394 spLh------rfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~--------~g~~vkafkff~---------- 449 (492)
T KOG1190|consen 394 SPLH------RFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE--------PGGQVKAFKFFQ---------- 449 (492)
T ss_pred Cchh------hccCcccccccccCCchhheeeccCCcccchhHHHHhhhc--------CCceEEeeeecC----------
Confidence 1111 1111222232 23445678999999999999999999996 455566555542
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEec
Q 002920 611 HYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 653 (865)
Q Consensus 611 ~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~ 653 (865)
..+-+|++.+.+.|+|..|+-.++++ -.|.+.++.|+|+.
T Consensus 450 -kd~kmal~q~~sveeA~~ali~~hnh--~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 450 -KDRKMALPQLESVEEAIQALIDLHNH--YLGENHHLRVSFSK 489 (492)
T ss_pred -CCcceeecccCChhHhhhhccccccc--cCCCCceEEEEeec
Confidence 45779999999999999999999997 56766788899985
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=252.52 Aligned_cols=265 Identities=23% Similarity=0.365 Sum_probs=213.8
Q ss_pred cccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhc
Q 002920 94 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 173 (865)
Q Consensus 94 ~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~ln 173 (865)
.+...+..+-|+|+|||..+..++|..+|..||.|..|-+| + .|.. |+|.|....+|.+|+..|.
T Consensus 378 F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~-----------~G~~---aiv~fl~p~eAr~Afrkla 442 (725)
T KOG0110|consen 378 FSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-P-----------GGTG---AIVEFLNPLEARKAFRKLA 442 (725)
T ss_pred chhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC-c-----------ccce---eeeeecCccchHHHHHHhc
Confidence 44466778899999999999999999999999999999664 2 2333 9999999999999999999
Q ss_pred CCccCCeEEEEecc-----C--------------C-------------------CC------------CCCCCcEEEEcC
Q 002920 174 QKEIKGGTVWARQL-----G--------------G-------------------EG------------SKTQKWKLIIRN 203 (865)
Q Consensus 174 g~~i~G~~i~v~~~-----~--------------~-------------------~~------------~~~~~~~l~V~n 203 (865)
+..+...++++... . . .. .....++|||.|
T Consensus 443 ysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkN 522 (725)
T KOG0110|consen 443 YSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKN 522 (725)
T ss_pred hhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhc
Confidence 88877666642100 0 0 00 011234499999
Q ss_pred CCCCCCHHHHHHhhcCCCceEEEEEcccCCC---CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccC
Q 002920 204 IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYS 280 (865)
Q Consensus 204 Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~ 280 (865)
|++++|.++|..+|...|.|.+|.|...+.. -.+.|||||+|.+.++|+.|+..|+|+.|.|+.|.|.++..+..-.
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~ 602 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST 602 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc
Confidence 9999999999999999999999988765421 1356999999999999999999999999999999999985211000
Q ss_pred CCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhh
Q 002920 281 SGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSAL 360 (865)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~ 360 (865)
+| .
T Consensus 603 ----------------------------~g---------------K---------------------------------- 605 (725)
T KOG0110|consen 603 ----------------------------VG---------------K---------------------------------- 605 (725)
T ss_pred ----------------------------cc---------------c----------------------------------
Confidence 00 0
Q ss_pred hcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec
Q 002920 361 VKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH 440 (865)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d 440 (865)
........+.|.|+|||+..+..+|+.+|..||.|.+|+|+.-
T Consensus 606 -------------------------------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 606 -------------------------------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred -------------------------------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 0001112578999999999999999999999999999999877
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchh
Q 002920 441 QVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 492 (865)
Q Consensus 441 ~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~ 492 (865)
...+.++|||||.|-++.+|.+|+.+|. ++.|.||.|.+.||..-..
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~-----STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALG-----STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhc-----ccceechhhheehhccchH
Confidence 5566789999999999999999999999 8999999999999987654
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=227.88 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=201.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhh-ccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAG-SIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
..-|.|||.|||+++.+++|++||. +.|+|+-|.+..| ..|+++|+|.|+|+++|.+++|++.||...+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D----------~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD----------ESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc----------cCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 5567899999999999999999998 6789999999988 5799999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCC------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHH
Q 002920 178 KGGTVWARQLGGEGS------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251 (865)
Q Consensus 178 ~G~~i~v~~~~~~~~------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A 251 (865)
.||+|.|....+... .....++|++++...+-...|...|+--|.+..-.+.+|. ++.+++..+++|...-.+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~-Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD-DRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc-cccccccCcccccccccc
Confidence 999999976543211 1234689999999999999999999988877777777775 588999999999988777
Q ss_pred HHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCch
Q 002920 252 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFD 331 (865)
Q Consensus 252 ~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (865)
..++..++.....-+++.+ +.
T Consensus 191 ~~~~~lfgl~~~Flr~~h~-f~---------------------------------------------------------- 211 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHI-FS---------------------------------------------------------- 211 (608)
T ss_pred chhhhcccchhhhhhhccC-CC----------------------------------------------------------
Confidence 7777755444333333332 11
Q ss_pred hHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEc
Q 002920 332 EEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFIC 411 (865)
Q Consensus 332 ~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~ 411 (865)
++....+||.
T Consensus 212 ----------------------------------------------------------------------pPl~~k~fva 221 (608)
T KOG4212|consen 212 ----------------------------------------------------------------------PPLHNKVFVA 221 (608)
T ss_pred ----------------------------------------------------------------------CCccceeeee
Confidence 1122479999
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEE
Q 002920 412 NLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 486 (865)
Q Consensus 412 NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~ 486 (865)
||.+.+....|++.|.--|.|.++.+-.|+ -|.++|||.++|+++-+|..||..++ +.-+..++..+.+
T Consensus 222 nl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~-----~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 222 NLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLD-----RQGLFDRRMTVRL 290 (608)
T ss_pred ccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhc-----cCCCccccceeec
Confidence 999999999999999999999999998887 46899999999999999999999999 6667777777766
No 36
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.2e-24 Score=221.23 Aligned_cols=168 Identities=14% Similarity=0.201 Sum_probs=153.7
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
-++||||.|.+.+.++-|+..|..||+|.+|.+-.|. -+|+++|||||+|+-+|.|.-|++.|||..+.||
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---------~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---------ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccc---------ccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 4689999999999999999999999999999997664 4899999999999999999999999999999999
Q ss_pred EEEEeccCCCCC-----------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHH
Q 002920 181 TVWARQLGGEGS-----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 249 (865)
Q Consensus 181 ~i~v~~~~~~~~-----------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e 249 (865)
.|.|.+...-.. .....+|||..+.++++++||+.+|+-||+|..|.+.+++..+.++||+||+|.+..
T Consensus 184 NiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 184 NIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred cccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 999976544322 235689999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 250 DAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 250 ~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
+...||..||-..++|..|+|-.+....
T Consensus 264 s~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chHHHhhhcchhhcccceEecccccCCC
Confidence 9999999999999999999998876544
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=1.8e-24 Score=206.00 Aligned_cols=172 Identities=30% Similarity=0.449 Sum_probs=155.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
..+..+|||+||+..++++.|+++|-+.|+|..+.|++|..+...+|||||+|.++|+|+-|++-||...+-|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002920 273 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 352 (865)
Q Consensus 273 a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~p 352 (865)
+.....
T Consensus 86 as~~~~-------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 86 ASAHQK-------------------------------------------------------------------------- 91 (203)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 741100
Q ss_pred CCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe
Q 002920 353 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 432 (865)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V 432 (865)
....+.+|||+||.+.+++.-|.+.|+.||.+
T Consensus 92 ------------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l 123 (203)
T KOG0131|consen 92 ------------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVL 123 (203)
T ss_pred ------------------------------------------------cccccccccccccCcchhHHHHHHHHHhcccc
Confidence 11124689999999999999999999999998
Q ss_pred eEE-EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 433 VSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 433 ~sv-~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
... .|++++.||.++|||||.|.+.+.+.+|+..|| |..+..++|.|.+|..+.
T Consensus 124 ~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-----gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 124 ISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-----GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-----cchhcCCceEEEEEEecC
Confidence 773 788999999999999999999999999999999 999999999999997653
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=203.47 Aligned_cols=168 Identities=22% Similarity=0.317 Sum_probs=153.0
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
..|||||||+..++++-|+++|-.+|+|..|++|.++. +....|||||+|.++|+|+-|++.||...|.|+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv---------~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV---------TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh---------cccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 46999999999999999999999999999999999876 567899999999999999999999999999999
Q ss_pred EEEEeccCCC-CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEE-EEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 181 TVWARQLGGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 181 ~i~v~~~~~~-~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
+|++...+.. ....-..+|||+||.+.++|..|++.|+.||.+... .|++++.||.++|||||.|.+.+.+.+|+..|
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 9999877632 223445799999999999999999999999997653 88899999999999999999999999999999
Q ss_pred CCceeCCeeEEEEecCCCC
Q 002920 259 NGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 259 ng~~i~gr~l~V~~a~~k~ 277 (865)
||..+..++|.|.++..+.
T Consensus 160 ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccchhcCCceEEEEEEecC
Confidence 9999999999999997553
No 39
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-20 Score=195.76 Aligned_cols=443 Identities=18% Similarity=0.232 Sum_probs=276.3
Q ss_pred ccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHh--
Q 002920 95 SQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL-- 172 (865)
Q Consensus 95 ~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~l-- 172 (865)
..++..+--|.|++|=..+++.+|.+.++.||.|.-|.++.- +.-|.|+|++.+.|+.++...
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---------------~r~alvefedi~~akn~Vnfaa~ 89 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---------------KRQALVEFEDIEGAKNCVNFAAD 89 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---------------cceeeeeeccccchhhheehhcc
Confidence 345566778999999999999999999999999999887433 224999999999999988732
Q ss_pred cCCccCCeEEEE--------eccCCCCCCCCCcEEE--EcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEE
Q 002920 173 HQKEIKGGTVWA--------RQLGGEGSKTQKWKLI--IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 242 (865)
Q Consensus 173 ng~~i~G~~i~v--------~~~~~~~~~~~~~~l~--V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~af 242 (865)
|...+.|..-.. ++.+. .+......|. |-|--+.+|-+-|+.++...|.|..|.|++. +|. -|.
T Consensus 90 n~i~i~gq~Al~NyStsq~i~R~g~-es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAm 163 (494)
T KOG1456|consen 90 NQIYIAGQQALFNYSTSQCIERPGD-ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAM 163 (494)
T ss_pred CcccccCchhhcccchhhhhccCCC-CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeE
Confidence 333455553332 22222 2223333343 4466678999999999999999999999875 443 499
Q ss_pred EEECCHHHHHHHHHHhCCcee--CCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCcc
Q 002920 243 VKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSE 320 (865)
Q Consensus 243 V~F~~~e~A~~Al~~lng~~i--~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 320 (865)
|+|.+.+.|++|-..|||..| +...|.|+|+.|..........+... .......+.-......
T Consensus 164 VEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwD-------------yTlp~~~~~~~~g~~~-- 228 (494)
T KOG1456|consen 164 VEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWD-------------YTLPDLRGPYDPGRNH-- 228 (494)
T ss_pred EeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCcccc-------------ccCCCCCCCCCCCCCC--
Confidence 999999999999999999988 77899999999876544322111110 0000000000000000
Q ss_pred ccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcch--hhhcCCCCCCchhhhhhhccccccccc--cCCCCCCCCcc
Q 002920 321 KEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDS--ALVKGNKEQDSDKTVNESAKVSDVSKL--NSSKSKPKSLK 396 (865)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~--~s~~~~~~~~~ 396 (865)
...+.. +.. .|..|+..... .-+.+....+ ....|. ......+. ..
T Consensus 229 ------~~r~~~---------p~~---~~~~pss~~G~h~~y~sg~~~~p-----------~~~~P~r~~~~~~~~~-g~ 278 (494)
T KOG1456|consen 229 ------YDRQRQ---------PAP---LGYHPSSRGGGHSGYYSGDRHGP-----------PHPPPSRYRDGYRDGR-GY 278 (494)
T ss_pred ------CccccC---------CCc---cCCChhhcCCCCCCCcccccCCC-----------CCCCCCCCccccccCC-CC
Confidence 000000 000 00000000000 0000000000 000000 00000000 01
Q ss_pred ccCCCCCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCe
Q 002920 397 QTEGEDELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 475 (865)
Q Consensus 397 ~~~~~~~~~~tLfV~NLP~~-vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~ 475 (865)
.+.+...+++.++|.+|... ++.+.|..+|..||.|..|++|..+ .|.|+|++.+..+.++|+..|| +.
T Consensus 279 a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn-----n~ 348 (494)
T KOG1456|consen 279 ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN-----NI 348 (494)
T ss_pred CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc-----cC
Confidence 11235567899999999876 5789999999999999999999764 6899999999999999999999 99
Q ss_pred EecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCC
Q 002920 476 FLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHV 555 (865)
Q Consensus 476 ~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~ 555 (865)
.+.|.+|.|.+....--. .-+.|+ +..+++.....+.+...+-.......+..++.|
T Consensus 349 ~lfG~kl~v~~SkQ~~v~--------------~~~pfl-----LpDgSpSfKdys~SkNnRFssp~qAsKNrIq~P---- 405 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQNFVS--------------PVQPFL-----LPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPP---- 405 (494)
T ss_pred ccccceEEEeeccccccc--------------cCCcee-----cCCCCcchhhcccccccccCChhHhhcccccCC----
Confidence 999999999885421100 012222 233455544444433222222233344445544
Q ss_pred ccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhc
Q 002920 556 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 635 (865)
Q Consensus 556 s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~ln 635 (865)
+++|+..|.|..+||+.|..+|... --.-.+|+|.... ..-.--|.++|++.++|..||..+|
T Consensus 406 -s~vLHffNaP~~vtEe~l~~i~nek--------~v~~~svkvFp~k--------serSssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 406 -SNVLHFFNAPLGVTEEQLIGICNEK--------DVPPTSVKVFPLK--------SERSSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred -cceeEEecCCCccCHHHHHHHhhhc--------CCCcceEEeeccc--------ccccccceeeeehHHHHHHHHHHhc
Confidence 4889999999999999999999851 1113556666321 1223478999999999999999999
Q ss_pred CCCCCCCCCCce-EEEEec
Q 002920 636 NNPKTFGPEHRP-IVEFAV 653 (865)
Q Consensus 636 g~p~~fg~~~rl-iV~fA~ 653 (865)
+.|+---.+.-+ +|.|+-
T Consensus 469 H~pi~~p~gs~PfilKlcf 487 (494)
T KOG1456|consen 469 HYPIEGPNGSFPFILKLCF 487 (494)
T ss_pred cccccCCCCCCCeeeeeee
Confidence 987443223334 366653
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=195.90 Aligned_cols=279 Identities=21% Similarity=0.296 Sum_probs=177.9
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
.|+|.|.+...+......++|||+-|...-.|+|++.+|..||.|.+|.+.+.+ .|.++|||||.|.+..+|..||..|
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh
Confidence 467777777666666688999999999999999999999999999999999976 5899999999999999999999999
Q ss_pred CCcee---CCeeEEEEecCCCCccCCCCcc--cCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhH
Q 002920 259 NGQKF---GKRPIAVDWAVPKNIYSSGGAA--AGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 333 (865)
Q Consensus 259 ng~~i---~gr~l~V~~a~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 333 (865)
||..- ....|.|.++...+++....-. .+.-..... .. .+...+..-
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~P--------------------l~--------l~~g~~~ay 132 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNP--------------------LA--------LPFGAYGAY 132 (371)
T ss_pred cccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCc--------------------cc--------cccchhHHH
Confidence 99764 3467888888654332110000 000000000 00 000000000
Q ss_pred --------HHHHHH-----------------------Hhhhc-----ccCC-CCCCCCCcch-----hhhcCCCC---CC
Q 002920 334 --------VDIARK-----------------------VLNKL-----TSTT-GSLPSLSDDS-----ALVKGNKE---QD 368 (865)
Q Consensus 334 --------~~~~~~-----------------------~l~~~-----~~~~-G~~ps~~~~~-----~~~~~~~~---~~ 368 (865)
...... .++.+ +... +..|...... ..+.+... ..
T Consensus 133 ~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~ 212 (371)
T KOG0146|consen 133 AQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLP 212 (371)
T ss_pred HHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCC
Confidence 000000 00000 0000 0000000000 00000000 00
Q ss_pred ---chhhhhh---------------------hccccc------cc-----cccCCC-CCCCCccccCCCCCCCCEEEEcC
Q 002920 369 ---SDKTVNE---------------------SAKVSD------VS-----KLNSSK-SKPKSLKQTEGEDELQNTIFICN 412 (865)
Q Consensus 369 ---~~~~~~~---------------------~~~~~~------~~-----p~~s~~-~~~~~~~~~~~~~~~~~tLfV~N 412 (865)
......+ .....+ .. |..++. +.++.......+++.+|+|||.+
T Consensus 213 ~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYH 292 (371)
T KOG0146|consen 213 PQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYH 292 (371)
T ss_pred CCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEe
Confidence 0000000 000000 01 111111 12222233346788999999999
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 413 LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 413 LP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
||.++.+.||..+|-+||.|++.+|.+|+.|+.+++||||.|+++.+|+.||.+|| |+.|+=++|.|.+..+++
T Consensus 293 LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-----GFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 293 LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-----GFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-----chhhhhhhhhhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999987764
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=1.2e-19 Score=196.99 Aligned_cols=458 Identities=17% Similarity=0.170 Sum_probs=254.3
Q ss_pred ccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCc
Q 002920 97 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 176 (865)
Q Consensus 97 ~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~ 176 (865)
+.....-|-+.+|||++|++||++||+.| .|+++.++.. +|+..|-|||+|.+++++++|++ .+...
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-----------~Gr~sGeA~Ve~~seedv~~Alk-kdR~~ 72 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-----------NGRPSGEAYVEFTSEEDVEKALK-KDRES 72 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-----------CCCcCcceEEEeechHHHHHHHH-hhHHH
Confidence 34566789999999999999999999999 6777777543 79999999999999999999998 78888
Q ss_pred cCCeEEEEeccC-----------CCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEcccCCCCCccceEEEE
Q 002920 177 IKGGTVWARQLG-----------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVK 244 (865)
Q Consensus 177 i~G~~i~v~~~~-----------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~afV~ 244 (865)
+.-+.|.|-... ..........|-+++||+.||+++|.+||+..-.|.. |.++.+. .+++.|-|||+
T Consensus 73 mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVq 151 (510)
T KOG4211|consen 73 MGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQ 151 (510)
T ss_pred hCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEE
Confidence 888888764332 2222346778999999999999999999998765555 5566665 47899999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccC-CCCCCCCccccC
Q 002920 245 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAET-ASDDSNSSEKED 323 (865)
Q Consensus 245 F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 323 (865)
|++.+.|+.||.. |...|+.|-|.|-.+.................. ...-+.. ......-+++. ...+..
T Consensus 152 F~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~r-pGpy~~~-~a~Rg~~d~~~~~~~~~~------ 222 (510)
T KOG4211|consen 152 FESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGR-PGPYDRP-GAPRGGYDYGQGRDPGRN------ 222 (510)
T ss_pred ecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCC-CCccccc-cCCccccccccccCCCcc------
Confidence 9999999999995 888899999999776543322221111000000 0000000 00000000000 000000
Q ss_pred CCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhcccccc-ccccCCCCCCCCccccCCCC
Q 002920 324 LPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDV-SKLNSSKSKPKSLKQTEGED 402 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~s~~~~~~~~~~~~~~~ 402 (865)
.-.+.. .....+ .+...|+..+. -..+.. ... ... .|..+........-....-.
T Consensus 223 ---~~r~g~-------~~~g~~-g~~~~~~~~d~--~~~gs~---------~~~--~~~~~~~~~g~~~~g~~g~~~~~~ 278 (510)
T KOG4211|consen 223 ---ATRYGA-------GGEGYY-GFSRYPSLQDY--GNFGSY---------GGG--RDPNYPVSSGPHRQGGAGDYGNGG 278 (510)
T ss_pred ---cccccc-------ccCCcc-ccccCcccccc--cccccc---------ccc--cccccCCCCCcccCCCcccccCCC
Confidence 000000 000000 00000000000 000000 000 000 00000000000000000112
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+..+..++||+..++.++.++|+..-.+ .|.|-..+ +|+..|-|+|+|.+.++|..||..= +.-+..+-|
T Consensus 279 ~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~Amskd------~anm~hrYV 350 (510)
T KOG4211|consen 279 PGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGAMGKD------GANMGHRYV 350 (510)
T ss_pred CCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHhhhccC------CcccCccee
Confidence 223789999999999999999999986544 66666664 8999999999999999999998552 345555555
Q ss_pred EEEEccCchhhhhhhhhhcccccccccchhhhccccc------------cCCCCCCCCCCchhHHHHHHHHHHhhhhcCC
Q 002920 483 TVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLI------------LEGTPAAEGVSDDDMSKRQMLHEKKMTKLQS 550 (865)
Q Consensus 483 ~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i------------~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~ 550 (865)
.+-.-- ..-........ ........-...-+.. ..+...+.+........ .-......
T Consensus 351 ElFln~-~~ga~g~~~~s---~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~~~G~~~~~~~~------~~~~Gy~g 420 (510)
T KOG4211|consen 351 ELFLNG-APGASGGGGPS---GPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGSPYGRPSDGYSS------PGGGGYSG 420 (510)
T ss_pred eecccC-CcccccCccCC---CCCCccccccccCCCCccccccccCCCCCccccCCCCCCcccccC------CCCCCCcC
Confidence 443311 00000000000 0000000000000000 00000000000000000 00000000
Q ss_pred CC-----CCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHH
Q 002920 551 PN-----FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 625 (865)
Q Consensus 551 p~-----~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e 625 (865)
|. ...-.-+|..+.+|+..++.++.++|. +++. -+|.|.+|... ...|-|-|.|.+.+
T Consensus 421 ~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~---------~~~~-a~~~~~yd~~~-------~~~~~a~~~~~~~~ 483 (510)
T KOG4211|consen 421 PRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFH---------PIRP-AQVELLYDHQF-------QRSGDARVIFYNRK 483 (510)
T ss_pred cccCCCCccccccccCcCCCCccccccchhhccc---------ccCc-ccccccccccc-------cccCceeEEEechh
Confidence 00 001123678889999999999999998 4554 46888888543 34789999999999
Q ss_pred HHHHHHHHhcC
Q 002920 626 HALVALRVLNN 636 (865)
Q Consensus 626 ~A~~Al~~lng 636 (865)
+++.|+..-.-
T Consensus 484 ~~q~a~~~~~~ 494 (510)
T KOG4211|consen 484 DYQDALMKDKQ 494 (510)
T ss_pred hhHHHHHhhhh
Confidence 99999876443
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=1.1e-18 Score=184.38 Aligned_cols=341 Identities=20% Similarity=0.214 Sum_probs=229.3
Q ss_pred ChhHHHHHHhhcCc-----ccCCceeeEEecccccchH------HhhhhhhhhhhhhhhhhcccCCCCCCCCcCCCCchh
Q 002920 1 MEDANRAVEMKNGT-----SVGGRKIGVKHAMHRASLE------QRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKL 69 (865)
Q Consensus 1 ~eda~~A~~~~n~~-----~~~gr~i~v~~a~~r~p~~------~r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~ 69 (865)
|+|.+.|+..+|++ .++|++|.|.+++++.-.. .|-...-.. .+
T Consensus 71 m~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~----------------~s--------- 125 (492)
T KOG1190|consen 71 MADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQA----------------VS--------- 125 (492)
T ss_pred hcchhhhhheeecccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhh----------------hh---------
Confidence 78999999999998 7889999999997774221 110000000 00
Q ss_pred hccCCCCCCCCccccCCC-cCCCcccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccC
Q 002920 70 LESGKTVKPRKAATLGID-LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 148 (865)
Q Consensus 70 ~e~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~ 148 (865)
.+........ .+........+...-.++|+|+-+.++.+.|+.+|+.||.|..|.-+....
T Consensus 126 --------~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn---------- 187 (492)
T KOG1190|consen 126 --------SVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN---------- 187 (492)
T ss_pred --------cccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----------
Confidence 0000000000 011111222335667899999999999999999999999999887654321
Q ss_pred CCccceEEEEECCHHHHHHHHHHhcCCccCCeEEEEec-------------------cCC----CC--------------
Q 002920 149 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ-------------------LGG----EG-------------- 191 (865)
Q Consensus 149 g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~-------------------~~~----~~-------------- 191 (865)
|- -|+|+|.+.+.|..|-..|+|..|....+..+- +.. .+
T Consensus 188 ~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~ 264 (492)
T KOG1190|consen 188 GF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAF 264 (492)
T ss_pred ch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccc
Confidence 21 299999999999999999999988765443210 000 00
Q ss_pred --------------------------CCC--CCcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEE
Q 002920 192 --------------------------SKT--QKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 242 (865)
Q Consensus 192 --------------------------~~~--~~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~af 242 (865)
... ....|.|.||.. .+|.+.|..+|+-||.|..|.|+.++. --|.
T Consensus 265 ~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~AL 339 (492)
T KOG1190|consen 265 GSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNAL 339 (492)
T ss_pred cccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----ccee
Confidence 001 136778888864 689999999999999999999998753 3499
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCcccc
Q 002920 243 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKE 322 (865)
Q Consensus 243 V~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 322 (865)
|+|.+...|+.|+..|+|..+.|++|+|.+++.......... ..+ .| .+.+...+
T Consensus 340 IQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg----------q~d-----------~g----lT~dy~~s 394 (492)
T KOG1190|consen 340 IQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG----------QED-----------QG----LTKDYGNS 394 (492)
T ss_pred eeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC----------Ccc-----------cc----ccccCCCC
Confidence 999999999999999999999999999999976543221100 000 00 00000000
Q ss_pred CCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCC
Q 002920 323 DLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGED 402 (865)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~ 402 (865)
.... | ...| ...+ ..--
T Consensus 395 pLhr---f---------------kkpg--------------------------------------------sKN~-~ni~ 411 (492)
T KOG1190|consen 395 PLHR---F---------------KKPG--------------------------------------------SKNY-QNIF 411 (492)
T ss_pred chhh---c---------------cCcc--------------------------------------------cccc-cccC
Confidence 0000 0 0000 0000 0012
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC-eE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-RQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G-r~ 481 (865)
++..+|.+.|+|.++++++|+.+|..-|-....... .+..+.+|++.+.+.|+|..|+-.++ .+.+++ ..
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~h-----nh~lgen~h 482 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLH-----NHYLGENHH 482 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccc-----cccCCCCce
Confidence 345799999999999999999999998887665443 23457799999999999999999999 778875 48
Q ss_pred EEEEEccC
Q 002920 482 LTVLKALD 489 (865)
Q Consensus 482 L~V~~A~~ 489 (865)
|+|.|..+
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99999653
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=2.3e-20 Score=189.50 Aligned_cols=149 Identities=26% Similarity=0.416 Sum_probs=137.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
..|||+|||..+++.+|+.+|++||.|++|.|+++ ||||..++...|+.||..|||..|.|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999864 8999999999999999999999999999999987544
Q ss_pred CccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCc
Q 002920 277 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 356 (865)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~ 356 (865)
.
T Consensus 75 s------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 75 S------------------------------------------------------------------------------- 75 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred chhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEE
Q 002920 357 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 436 (865)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~ 436 (865)
..+++|+|+||.+.++.+||+..|.+||+|..|.
T Consensus 76 ----------------------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 76 ----------------------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred ----------------------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 1136899999999999999999999999999999
Q ss_pred EeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 437 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 437 i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
|+ ++|+||.|+..++|..|+..|+ +..|.|++|+|.+..++-
T Consensus 110 iv--------kdy~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 110 IV--------KDYAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ee--------cceeEEEEeeccchHHHHhccc-----ccccccceeeeeeecccc
Confidence 97 5699999999999999999999 999999999999987663
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=3.2e-20 Score=188.47 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=136.9
Q ss_pred EEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeEE
Q 002920 103 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 182 (865)
Q Consensus 103 tVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i 182 (865)
.|||||||..+++.+|+.+|..||.|++|.|+.+ ||||..++...|+.||..|||..|+|..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------------YgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------------cceEEeecccccHHHHhhcccceecceEE
Confidence 5899999999999999999999999999999654 89999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce
Q 002920 183 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262 (865)
Q Consensus 183 ~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~ 262 (865)
.|..+... ....++|+|+||.+.++..+|+..|.+||+|.+|.|++ +|+||.|...++|..|++.|++..
T Consensus 67 nVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 67 NVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred EEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 99876543 45678999999999999999999999999999999975 589999999999999999999999
Q ss_pred eCCeeEEEEecCCC
Q 002920 263 FGKRPIAVDWAVPK 276 (865)
Q Consensus 263 i~gr~l~V~~a~~k 276 (865)
|.|++++|+.+...
T Consensus 137 ~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSR 150 (346)
T ss_pred cccceeeeeeeccc
Confidence 99999999998654
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=8.6e-17 Score=170.93 Aligned_cols=195 Identities=19% Similarity=0.182 Sum_probs=157.2
Q ss_pred hhHHHHHHhhcCcccCCceeeEEecccccchHHhhhhhhhhhhhhhhhhcccCCCCCCCCcCCCCchhhccCCCCCCCCc
Q 002920 2 EDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKA 81 (865)
Q Consensus 2 eda~~A~~~~n~~~~~gr~i~v~~a~~r~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~e~~~~~~~~k~ 81 (865)
|.+++|+|.||-+++.||+|.|+-. +.. +| ....
T Consensus 97 E~~qKa~E~lnk~~~~GR~l~vKEd-~d~---q~-~~~~----------------------------------------- 130 (608)
T KOG4212|consen 97 ENVQKALEKLNKYEVNGRELVVKED-HDE---QR-DQYG----------------------------------------- 130 (608)
T ss_pred HHHHHHHHHhhhccccCceEEEecc-Cch---hh-hhhh-----------------------------------------
Confidence 6789999999999999999999865 111 11 1111
Q ss_pred cccCCCcCCCcccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECC
Q 002920 82 ATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 161 (865)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s 161 (865)
-..+..-++|++++.+.+-..-|...|.--|.+..-.+..| .++.+++..+++|..
T Consensus 131 --------------~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D----------~Dr~sr~~~t~t~~~ 186 (608)
T KOG4212|consen 131 --------------RIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRD----------DDRLSRRNNTNTMSN 186 (608)
T ss_pred --------------heeeccCcccccCcceecccccccccCCCCccccCCCCccc----------ccccccccCcccccc
Confidence 12256678999999999999999999998887766666555 368889999999999
Q ss_pred HHHHHHHHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceE
Q 002920 162 VKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 241 (865)
Q Consensus 162 ~e~A~~Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~a 241 (865)
.-.+..++..++.....-+.+.. -.++....+||.||.+.+....|++.|.-.|.|..|.+-.|++ |.++|||
T Consensus 187 ~~~~~~~~~lfgl~~~Flr~~h~------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~ 259 (608)
T KOG4212|consen 187 DYNNSSNYNLFGLSASFLRSLHI------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFA 259 (608)
T ss_pred ccccchhhhcccchhhhhhhccC------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCee
Confidence 88888888866666555554442 2345567899999999999999999999999999999988876 7899999
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 242 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 242 fV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.++|..+-.|..||..|++.-+..++..+...
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 99999999999999999987778888777764
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=1.9e-16 Score=172.29 Aligned_cols=300 Identities=21% Similarity=0.253 Sum_probs=189.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.....|.+++|||++|+++|.+||+.|+ |.++.+.+ .+|+..|-|||+|.+.+++++||+ .+...+..|-|.|-.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3455788999999999999999999995 77776665 479999999999999999999999 4888999999999876
Q ss_pred CCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002920 274 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 353 (865)
Q Consensus 274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps 353 (865)
.....- -.+...|
T Consensus 84 ~~~e~d---------------------------------------------------------------~~~~~~g---- 96 (510)
T KOG4211|consen 84 GGAEAD---------------------------------------------------------------WVMRPGG---- 96 (510)
T ss_pred CCcccc---------------------------------------------------------------ccccCCC----
Confidence 433210 0000000
Q ss_pred CCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCee
Q 002920 354 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 433 (865)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~ 433 (865)
| ........|.+++||+.||++||.+||+..-.|.
T Consensus 97 ------------------------------~---------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~ 131 (510)
T KOG4211|consen 97 ------------------------------P---------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVP 131 (510)
T ss_pred ------------------------------C---------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccc
Confidence 0 0001235899999999999999999999876555
Q ss_pred E-EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhccccc-------
Q 002920 434 S-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNET------- 505 (865)
Q Consensus 434 s-v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~------- 505 (865)
. +.+++++ .+++.|-|||+|++.+.|+.||.... ..|+-|-|.|..+.-.+..... ......-.
T Consensus 132 ~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr------e~iGhRYIEvF~Ss~~e~~~~~-~~~~~~~~rpGpy~~ 203 (510)
T KOG4211|consen 132 DGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR------ENIGHRYIEVFRSSRAEVKRAA-GPGDGRVGRPGPYDR 203 (510)
T ss_pred cceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH------HhhccceEEeehhHHHHHHhhc-cccccccCCCCcccc
Confidence 5 4455554 67899999999999999999998765 7788888988776432211110 00000000
Q ss_pred -ccccch--hhh---------ccccccCCC------C---CCCCCCchhHHHHHHHHHHh---hhhcCCC----CCCCcc
Q 002920 506 -NDHRNL--YLA---------KEGLILEGT------P---AAEGVSDDDMSKRQMLHEKK---MTKLQSP----NFHVSR 557 (865)
Q Consensus 506 -~d~~~l--~l~---------~~g~i~~~s------~---~~~~~s~~~~~~r~~~~~~~---~~~l~~p----~~~~s~ 557 (865)
...|.. |.. ..+....+. + ...... +....+ ...-.. ...+..+ ++....
T Consensus 204 ~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g-s~~~~~-~~~~~~~~g~~~~g~~g~~~~~~~~g 281 (510)
T KOG4211|consen 204 PGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG-SYGGGR-DPNYPVSSGPHRQGGAGDYGNGGPGG 281 (510)
T ss_pred ccCCccccccccccCCCccccccccccCCccccccCcccccccccc-cccccc-ccccCCCCCcccCCCcccccCCCCCC
Confidence 000000 000 000000000 0 000000 000000 000000 0011111 111222
Q ss_pred CeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcC
Q 002920 558 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 636 (865)
Q Consensus 558 ~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng 636 (865)
..++.++||+..++.++..+|+ ......|.|-..+ .++..|-|+|+|.|+++|..|+-.=..
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFs----------pl~p~~v~i~ig~-------dGr~TGEAdveF~t~edav~Amskd~a 343 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFS----------PLNPYRVHIEIGP-------DGRATGEADVEFATGEDAVGAMGKDGA 343 (510)
T ss_pred ceeeecCCCccCCCcchhhhcC----------CCCceeEEEEeCC-------CCccCCcceeecccchhhHhhhccCCc
Confidence 5789999999999999999999 3444466666542 358899999999999999999865443
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=2.2e-17 Score=184.65 Aligned_cols=274 Identities=19% Similarity=0.260 Sum_probs=206.1
Q ss_pred ccccCCCCEEEEcCCCCcccHHHHHHHhhcc-----------C-CeEEEEeeCCchhhhhcccccCCCccceEEEEECCH
Q 002920 95 SQKQRVARTVIIGGLLNADMAEEVHRLAGSI-----------G-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTV 162 (865)
Q Consensus 95 ~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~-----------G-~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~ 162 (865)
+......+.++|+++|+.++++.+..+|..- | .|.+|.+ .....|||++|.+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------------n~~~nfa~ie~~s~ 233 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------------NLEKNFAFIEFRSI 233 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------------cccccceeEEecCC
Confidence 3344678999999999999999999988754 3 3666665 23457899999999
Q ss_pred HHHHHHHHHhcCCccCCeEEEEeccCC-----------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcC
Q 002920 163 KSACASVALLHQKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 219 (865)
Q Consensus 163 e~A~~Al~~lng~~i~G~~i~v~~~~~-----------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~ 219 (865)
+.|..|.. +++..+.|.++.+..... .........+||++||..+++.++.++...
T Consensus 234 ~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 234 SEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred Cchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 99999987 999999999877644221 112345678999999999999999999999
Q ss_pred CCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCC
Q 002920 220 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSG 299 (865)
Q Consensus 220 ~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~ 299 (865)
||.+....++.+..+|.++||||.+|.++.-...|+..|||+.+++..|.|..+............ +..
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---------~~~-- 381 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---------ISQ-- 381 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---------ccc--
Confidence 999999999999999999999999999999999999999999999999999998654321100000 000
Q ss_pred CCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccc
Q 002920 300 SDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKV 379 (865)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (865)
. ....+.....
T Consensus 382 --------------------------------~----~~~~i~~~~~--------------------------------- 392 (500)
T KOG0120|consen 382 --------------------------------S----QVPGIPLLMT--------------------------------- 392 (500)
T ss_pred --------------------------------c----ccccchhhhc---------------------------------
Confidence 0 0000000000
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeecCC---CCCC
Q 002920 380 SDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQV---TKRP 446 (865)
Q Consensus 380 ~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NL--P~~vt--------eedL~e~Fs~fG~V~sv~i~~d~~---~g~~ 446 (865)
.....+...|.+.|+ |.+.. -|+|+.-++.||.|.+|.|.++-. ....
T Consensus 393 -------------------q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G 453 (500)
T KOG0120|consen 393 -------------------QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPG 453 (500)
T ss_pred -------------------ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCC
Confidence 002223456666665 22221 256777889999999999987722 2345
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEcc
Q 002920 447 KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 447 kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~ 488 (865)
.|-.||+|.+.+++++|+++|+ |..|.||.|...|..
T Consensus 454 ~GkVFVefas~ed~qrA~~~L~-----GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 454 TGKVFVEFADTEDSQRAMEELT-----GRKFANRTVVASYYD 490 (500)
T ss_pred cccEEEEecChHHHHHHHHHcc-----CceeCCcEEEEEecC
Confidence 7889999999999999999999 999999999999965
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=1e-17 Score=179.46 Aligned_cols=175 Identities=25% Similarity=0.457 Sum_probs=152.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
...+|||++|++.++++.|++.|.+||.|..|.+++|+.+++++||+||+|.+++....+|.. .-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567999999999999999999999999999999999999999999999999999999999873 6778999999998887
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+........
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 653210000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
.......|||++||.++++++|+++|.+||.|..
T Consensus 93 ----------------------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 93 ----------------------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred ----------------------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 0002358999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhh
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 493 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~ 493 (865)
+.++.|..+.+++||+||.|.+.+.+.+++.. . -+.|.|+.+.|..|.++...
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~-----f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K-----FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eEEeecccccccccceeeEeccccccceeccc-c-----eeeecCceeeEeeccchhhc
Confidence 99999999999999999999999998888754 3 68999999999999998643
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.9e-17 Score=183.67 Aligned_cols=303 Identities=20% Similarity=0.363 Sum_probs=213.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCC-----------Cc-eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPV-----------GL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~-----------G~-I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
..+...++|+++|+.++++.+..+|..- |+ |..|.+-. .+.|||++|.+.++|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-ccc
Confidence 3466789999999999999999999863 32 55566533 56799999999999999987 799
Q ss_pred ceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 002920 261 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 340 (865)
Q Consensus 261 ~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (865)
..+.|.++.+..-.....-.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p------------------------------------------------------------ 264 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVP------------------------------------------------------------ 264 (500)
T ss_pred hhhCCCCceecccccccCCc------------------------------------------------------------
Confidence 99999999886532111000
Q ss_pred hhhcccCC---CCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCC
Q 002920 341 LNKLTSTT---GSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 417 (865)
Q Consensus 341 l~~~~~~~---G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~v 417 (865)
.++..+ +.++... .........+.+||.|||..+
T Consensus 265 --~~~~~~~~~~~~~~~~-----------------------------------------~~t~~~~~~~ki~v~~lp~~l 301 (500)
T KOG0120|consen 265 --GITLSPSQLGKVGLLP-----------------------------------------ASTDVPDSPNKIFVGGLPLYL 301 (500)
T ss_pred --cchhhhccccccCCcc-----------------------------------------cccCcccccchhhhccCcCcc
Confidence 000000 0000000 000012234689999999999
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhh
Q 002920 418 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE 497 (865)
Q Consensus 418 teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~ 497 (865)
++.++.++...||.+....++.+..+|.++||||.+|.++.....|+..|| |..++++.|.|..|.........
T Consensus 302 ~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-----Gm~lgd~~lvvq~A~~g~~~~~~- 375 (500)
T KOG0120|consen 302 TEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-----GMQLGDKKLVVQRAIVGASNANV- 375 (500)
T ss_pred CHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc-----hhhhcCceeEeehhhccchhccc-
Confidence 999999999999999999999999999999999999999999999999999 99999999999998754321110
Q ss_pred hhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCC--CccC-CHHHH
Q 002920 498 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL--PKSM-TEKGL 574 (865)
Q Consensus 498 ~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NL--P~~v-tee~L 574 (865)
+.+++ . + ...+.+ .+..+...++..+|++.|+ |.++ .+++.
T Consensus 376 ----------~~~~~--~-~-~~~~i~----------------------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~Ey 419 (500)
T KOG0120|consen 376 ----------NFNIS--Q-S-QVPGIP----------------------LLMTQMAGIPTEVLCLTNVVTPDELKDDEEY 419 (500)
T ss_pred ----------cCCcc--c-c-ccccch----------------------hhhcccCCCcchhhhhhhcCCHHHhcchHHH
Confidence 11100 0 0 000100 0111122334567888888 5554 45555
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEecc
Q 002920 575 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVD 654 (865)
Q Consensus 575 ~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~e 654 (865)
.++.+ .|.-+|.+ ||.|..|.|+++.... ....+.|..||+|.+.++++.|+.+|+|. .|. ++.++..|..+
T Consensus 420 eeIlE-dvr~ec~k-~g~v~~v~ipr~~~~~---~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~-nRtVvtsYyde 491 (500)
T KOG0120|consen 420 EEILE-DVRTECAK-FGAVRSVEIPRPYPDE---NPVPGTGKVFVEFADTEDSQRAMEELTGR--KFA-NRTVVASYYDE 491 (500)
T ss_pred HHHHH-HHHHHhcc-cCceeEEecCCCCCCC---CcCCCcccEEEEecChHHHHHHHHHccCc--eeC-CcEEEEEecCH
Confidence 66655 46777775 9999999999873222 33467899999999999999999999998 677 24444777755
Q ss_pred c
Q 002920 655 N 655 (865)
Q Consensus 655 ~ 655 (865)
+
T Consensus 492 D 492 (500)
T KOG0120|consen 492 D 492 (500)
T ss_pred H
Confidence 4
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=8.3e-18 Score=180.05 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=149.9
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCC
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 179 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G 179 (865)
+.++|||++|+|.++++.|+++|+.||+|..|.++.+.. +++++||+||+|.+.+....+|. ..-..|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~---------t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS---------TGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC---------CCCcccccceecCCCcchheeec-ccccccCC
Confidence 678999999999999999999999999999999998864 69999999999999999998887 55666888
Q ss_pred eEEEEeccCCCCC------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHH
Q 002920 180 GTVWARQLGGEGS------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253 (865)
Q Consensus 180 ~~i~v~~~~~~~~------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~ 253 (865)
+.|.+........ ......|||++||.++++++|+++|.+||.|..+.++.|..+.+.+||+||.|.+++.+.+
T Consensus 75 r~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 8887755433221 2235589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEecCCCCcc
Q 002920 254 AIQKFNGQKFGKRPIAVDWAVPKNIY 279 (865)
Q Consensus 254 Al~~lng~~i~gr~l~V~~a~~k~~~ 279 (865)
++. ...+.|.|+.+.|..|.|+...
T Consensus 155 v~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 155 VTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecc-cceeeecCceeeEeeccchhhc
Confidence 998 5889999999999999988643
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3.7e-17 Score=164.00 Aligned_cols=172 Identities=24% Similarity=0.360 Sum_probs=146.1
Q ss_pred cccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC
Q 002920 96 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 175 (865)
Q Consensus 96 ~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~ 175 (865)
....+.|.||||=|...-.|+|++.+|..||.|.+|.+... .+|.++|+|||.|.+..+|..||..|||.
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg----------~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG----------PDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC----------CCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 34446789999999999999999999999999999999655 57999999999999999999999999985
Q ss_pred cc-CCe--EEEE--------------------------------------------------------------------
Q 002920 176 EI-KGG--TVWA-------------------------------------------------------------------- 184 (865)
Q Consensus 176 ~i-~G~--~i~v-------------------------------------------------------------------- 184 (865)
.- .|- .|-|
T Consensus 84 qTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~m 163 (371)
T KOG0146|consen 84 QTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQM 163 (371)
T ss_pred ccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHH
Confidence 42 221 0000
Q ss_pred ----------------eccC---------------------------------C--------------------------
Q 002920 185 ----------------RQLG---------------------------------G-------------------------- 189 (865)
Q Consensus 185 ----------------~~~~---------------------------------~-------------------------- 189 (865)
.+.. +
T Consensus 164 Q~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~l 243 (371)
T KOG0146|consen 164 QQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPL 243 (371)
T ss_pred HHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchh
Confidence 0000 0
Q ss_pred -----------------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC
Q 002920 190 -----------------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 234 (865)
Q Consensus 190 -----------------------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t 234 (865)
.......++|||-.||....+.+|..+|-+||.|.+.++..|+.|
T Consensus 244 q~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT 323 (371)
T KOG0146|consen 244 QQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT 323 (371)
T ss_pred hhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc
Confidence 000245789999999999999999999999999999999999999
Q ss_pred CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 235 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 235 g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
+.+++|+||.|.++.+|+.||..|||..|+=++|+|.+-+|+.
T Consensus 324 NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 324 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred ccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999999999999988775
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=2.6e-15 Score=149.66 Aligned_cols=208 Identities=21% Similarity=0.269 Sum_probs=146.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHH----hhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 195 QKWKLIIRNIPFKAKVNEIKD----MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~----~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
+..+|||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+|..+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998887 999999999998875 5779999999999999999999999999999999999
Q ss_pred EecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002920 271 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 350 (865)
Q Consensus 271 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~ 350 (865)
+||..+..........-.......... . + ..
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~-----------------------~-------------------~-------~~ 115 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGE-----------------------I-------------------L-------AR 115 (221)
T ss_pred ecccCccchhhccCceeccccCccccc-----------------------c-------------------c-------cc
Confidence 999866533222110000000000000 0 0 00
Q ss_pred CCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC
Q 002920 351 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 430 (865)
Q Consensus 351 ~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG 430 (865)
.+...+..+. +........+.+.. ....++...||+.|||.+++.+.|..+|.+|.
T Consensus 116 ~~~~~~~ng~-----------------------~~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~ 171 (221)
T KOG4206|consen 116 IKQPLDTNGH-----------------------FYNMNRMNLPPPFL-AQMAPPNNILFLTNIPSESESEMLSDLFEQFP 171 (221)
T ss_pred cCCccccccc-----------------------ccccccccCCCCcc-ccCCCCceEEEEecCCcchhHHHHHHHHhhCc
Confidence 0000000000 00000000000111 22345678999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec-CeEEEEEEcc
Q 002920 431 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 488 (865)
Q Consensus 431 ~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~-Gr~L~V~~A~ 488 (865)
....++++.. -.+.|||+|.+...|..|...+. |..|- ...+.|.+|.
T Consensus 172 g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq-----~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 172 GFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQ-----GFKITKKNTMQITFAK 220 (221)
T ss_pred ccceeEeccC-----CCceeEEecchhhhhHHHhhhhc-----cceeccCceEEecccC
Confidence 9999987754 37899999999999999999999 88876 8888888764
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.65 E-value=3e-15 Score=149.23 Aligned_cols=202 Identities=25% Similarity=0.354 Sum_probs=141.3
Q ss_pred CEEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 406 NTIFICNLPFDLDNEEVKQ----RFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e----~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
.||||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|..|+.+|+ |+.|.|++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~-----gfpFygK~ 81 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQ-----GFPFYGKP 81 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhc-----CCcccCch
Confidence 3999999999999998888 99999999998654 367899999999999999999999999 99999999
Q ss_pred EEEEEccCchhhhhhhhhh-cccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCC---CCCCcc
Q 002920 482 LTVLKALDKKLAHDKEIDK-SKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSP---NFHVSR 557 (865)
Q Consensus 482 L~V~~A~~k~~~~~~~~~~-~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p---~~~~s~ 557 (865)
+.|.||..+...-...... ....... +.--+...+ ..+...+.... .....++.| ....+.
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~-~~~~~~~~~----~~~~~ng~~~~----------~~~~~~p~p~~~~~~ppn 146 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKI-NGEILARIK----QPLDTNGHFYN----------MNRMNLPPPFLAQMAPPN 146 (221)
T ss_pred hheecccCccchhhccCceeccccCcc-ccccccccC----Ccccccccccc----------cccccCCCCccccCCCCc
Confidence 9999998775433221100 0000000 000000000 00000000000 000000111 113345
Q ss_pred CeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 558 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 558 ~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
..||+.|||.+++.+.|..+|. +|+.-..|+++.. -.|+|||+|.+...|..|...|++.
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~---------qf~g~keir~i~~-----------~~~iAfve~~~d~~a~~a~~~lq~~ 206 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFE---------QFPGFKEIRLIPP-----------RSGIAFVEFLSDRQASAAQQALQGF 206 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHh---------hCcccceeEeccC-----------CCceeEEecchhhhhHHHhhhhccc
Confidence 7899999999999999999999 6999999999853 4789999999999999999999997
Q ss_pred CCCCCCCCceEEEEe
Q 002920 638 PKTFGPEHRPIVEFA 652 (865)
Q Consensus 638 p~~fg~~~rliV~fA 652 (865)
.+ .+.+.+.|.||
T Consensus 207 ~i--t~~~~m~i~~a 219 (221)
T KOG4206|consen 207 KI--TKKNTMQITFA 219 (221)
T ss_pred ee--ccCceEEeccc
Confidence 44 33466668887
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=8e-15 Score=140.14 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=130.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
+..++|||+|||.++-+.+|.++|.+||.|..|.+... -..-+||||+|++.-+|+.||..-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r------------~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR------------PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC------------CCCCCeeEEEecCccchhhhhhcccccccC
Confidence 56799999999999999999999999999999998432 223579999999999999999999999999
Q ss_pred CeEEEEeccCC--------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccC
Q 002920 179 GGTVWARQLGG--------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 232 (865)
Q Consensus 179 G~~i~v~~~~~--------------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~ 232 (865)
|..|+|.-... ........+|.|.+||...++++|+++....|.|....+.+|
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 99999843211 112345678999999999999999999999999998888775
Q ss_pred CCCCccceEEEEECCHHHHHHHHHHhCCcee--CCeeEEEEe
Q 002920 233 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDW 272 (865)
Q Consensus 233 ~tg~~kG~afV~F~~~e~A~~Al~~lng~~i--~gr~l~V~~ 272 (865)
|++.|+|...|+.+-||..|....+ .|-...+..
T Consensus 151 ------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 151 ------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred ------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 4799999999999999999988877 344444443
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=7.5e-15 Score=142.36 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=79.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+++|||+|||+++|+++|+++|++||.|.+|.|+.+..++.++|||||+|.+.++|+.|+..|| +..|+|++|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-----g~~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-----GKELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.|+.++.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99997654
No 56
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=3.5e-14 Score=148.28 Aligned_cols=203 Identities=16% Similarity=0.274 Sum_probs=138.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 473 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s--------v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~ 473 (865)
...++.|||.|||.++|.+++.++|++||.|.. |+|.++. .|..+|-|+|+|...++..-|+..|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD----- 204 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD----- 204 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC-----
Confidence 344678999999999999999999999998876 6777775 59999999999999999999999999
Q ss_pred CeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCC
Q 002920 474 GIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNF 553 (865)
Q Consensus 474 g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~ 553 (865)
+..|.|+.|+|..|.=...-..-...+.+....+.+.+. ..+.....+.... ..+.-
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~----------------------k~q~k~~dw~pd~-~~~sk 261 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLK----------------------KQQQKLLDWRPDR-DDPSK 261 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHH----------------------HHHHhhcccCCCc-ccccc
Confidence 999999999999986321100000000000000000000 0000000011111 11222
Q ss_pred CCccCeEEEeCC--Ccc--CCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHH
Q 002920 554 HVSRTRLVIYNL--PKS--MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 629 (865)
Q Consensus 554 ~~s~~~L~V~NL--P~~--vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~ 629 (865)
....++|.|+|| |.. .+.+.|.++ .+.+++.|.+ ||.|.+|.|.-. ++.|.+-|.|.+.++|..
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dl-kedl~eec~K-~G~v~~vvv~d~----------hPdGvvtV~f~n~eeA~~ 329 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDL-KEDLTEECEK-FGQVRKVVVYDR----------HPDGVVTVSFRNNEEADQ 329 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHH-HHHHHHHHHH-hCCcceEEEecc----------CCCceeEEEeCChHHHHH
Confidence 334578999999 443 333444444 5567777886 999999977632 678999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceE
Q 002920 630 ALRVLNNNPKTFGPEHRPI 648 (865)
Q Consensus 630 Al~~lng~p~~fg~~~rli 648 (865)
||+.|+|+ +|+ ++.|.
T Consensus 330 ciq~m~GR--~fd-gRql~ 345 (382)
T KOG1548|consen 330 CIQTMDGR--WFD-GRQLT 345 (382)
T ss_pred HHHHhcCe--eec-ceEEE
Confidence 99999998 888 45554
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=1.6e-14 Score=140.16 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|++||.|.+|.|+.+..+++++|||||+|.+.++|+.||..||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=144.56 Aligned_cols=276 Identities=21% Similarity=0.314 Sum_probs=188.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccC----CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIG----TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ 174 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G----~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng 174 (865)
.+.--|..++|||.....+|..+|...- -+.-|.. ..|+..|.|.|.|.+.|.-+-|++ -+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-------------~qgrRnge~lvrf~d~e~Rdlalk-Rhk 123 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-------------AQGRRNGEALVRFVDPEGRDLALK-RHK 123 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-------------hhhccccceEEEecCchhhhhhhH-hhh
Confidence 4455677899999999999999998541 1111111 256777889999999999999988 677
Q ss_pred CccCCeEEEEeccCCC------------C----CCCCCcEEEEcCCCCCCCHHHHHHhhcCC----CceEEEEEcccCCC
Q 002920 175 KEIKGGTVWARQLGGE------------G----SKTQKWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDT 234 (865)
Q Consensus 175 ~~i~G~~i~v~~~~~~------------~----~~~~~~~l~V~nLp~~~tee~L~~~F~~~----G~I~~v~i~~d~~t 234 (865)
..+.++.|.+-...++ . +....-.|.+++||+++++.++.+||.+- |....|.++..+ +
T Consensus 124 hh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-d 202 (508)
T KOG1365|consen 124 HHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-D 202 (508)
T ss_pred hhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-C
Confidence 7788888876443221 0 11223456778999999999999999742 234455555543 6
Q ss_pred CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCC
Q 002920 235 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD 314 (865)
Q Consensus 235 g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 314 (865)
|+..|-|||.|..+++|..||.. |...|+-|-|.+-.+.
T Consensus 203 grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST---------------------------------------- 241 (508)
T KOG1365|consen 203 GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST---------------------------------------- 241 (508)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh----------------------------------------
Confidence 89999999999999999999986 7667776666654432
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCC
Q 002920 315 DSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKS 394 (865)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~ 394 (865)
.....+++++.... +-++... .|.....
T Consensus 242 -------------------aaEvqqvlnr~~s~-pLi~~~~---------------------------sp~~p~~----- 269 (508)
T KOG1365|consen 242 -------------------AAEVQQVLNREVSE-PLIPGLT---------------------------SPLLPGG----- 269 (508)
T ss_pred -------------------HHHHHHHHHhhccc-cccCCCC---------------------------CCCCCCC-----
Confidence 11122333332210 0000000 0000000
Q ss_pred ccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eeE--EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCC
Q 002920 395 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTS 471 (865)
Q Consensus 395 ~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~-V~s--v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~ 471 (865)
+..--.......+|.+++||++.+.++|.++|..|-. |.. |.++.+. .|++.|-|||+|.+.+.|..|....+
T Consensus 270 p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~h--- 345 (508)
T KOG1365|consen 270 PARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCH--- 345 (508)
T ss_pred ccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHH---
Confidence 0000001222469999999999999999999999865 333 6666664 79999999999999999999999998
Q ss_pred CCCeEecCeEEEEEEcc
Q 002920 472 GLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 472 ~~g~~l~Gr~L~V~~A~ 488 (865)
.....+|.|.|-.+.
T Consensus 346 --k~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 346 --KKLMKSRYIEVFPCS 360 (508)
T ss_pred --HhhcccceEEEeecc
Confidence 677779999998764
No 59
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=7.8e-13 Score=138.83 Aligned_cols=301 Identities=19% Similarity=0.194 Sum_probs=197.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh--CCceeCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--ng~~i~gr~l~ 269 (865)
....+-.|.|++|-..++|.+|.+.++.||.|.-|.++.. +..|.|+|.+.+.|+.++... +...+.|..-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3456778999999999999999999999999988877643 346999999999999988631 22334555555
Q ss_pred EEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCC
Q 002920 270 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 349 (865)
Q Consensus 270 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 349 (865)
+.++....... .|
T Consensus 101 ~NyStsq~i~R-------------------------------------------------------------------~g 113 (494)
T KOG1456|consen 101 FNYSTSQCIER-------------------------------------------------------------------PG 113 (494)
T ss_pred cccchhhhhcc-------------------------------------------------------------------CC
Confidence 55442211100 00
Q ss_pred CCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEE--EEcCCCCCCCHHHHHHHhh
Q 002920 350 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTI--FICNLPFDLDNEEVKQRFS 427 (865)
Q Consensus 350 ~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tL--fV~NLP~~vteedL~e~Fs 427 (865)
. ....++..| -|-|--+.+|-+-|+.++-
T Consensus 114 --------------~-----------------------------------es~~pN~VLl~TIlNp~YpItvDVly~Icn 144 (494)
T KOG1456|consen 114 --------------D-----------------------------------ESATPNKVLLFTILNPQYPITVDVLYTICN 144 (494)
T ss_pred --------------C-----------------------------------CCCCCCeEEEEEeecCccccchhhhhhhcC
Confidence 0 001112233 3445566789999999999
Q ss_pred ccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe--cCeEEEEEEccCchhhhhhhhhhccccc
Q 002920 428 AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--KGRQLTVLKALDKKLAHDKEIDKSKNET 505 (865)
Q Consensus 428 ~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l--~Gr~L~V~~A~~k~~~~~~~~~~~~~~~ 505 (865)
+.|.|..|.|+.. + --.|+|+|++.+.|++|..+|| |..| +-..|.|.||.+-...-.+. ....
T Consensus 145 p~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alN-----GADIYsGCCTLKIeyAkP~rlnV~kn----d~Dt 210 (494)
T KOG1456|consen 145 PQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALN-----GADIYSGCCTLKIEYAKPTRLNVQKN----DKDT 210 (494)
T ss_pred CCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcc-----cccccccceeEEEEecCcceeeeeec----CCcc
Confidence 9999999977643 2 3469999999999999999999 6544 56899999998743221110 1111
Q ss_pred ccccchhhhc-----ccccc-CCCCCCCCCCchh-------------------HHHH--HHHHHHhhhhcCCCCCCCccC
Q 002920 506 NDHRNLYLAK-----EGLIL-EGTPAAEGVSDDD-------------------MSKR--QMLHEKKMTKLQSPNFHVSRT 558 (865)
Q Consensus 506 ~d~~~l~l~~-----~g~i~-~~s~~~~~~s~~~-------------------~~~r--~~~~~~~~~~l~~p~~~~s~~ 558 (865)
+|....++.. .+... -.-|+..+..++. ...| ...... .....|....+.+
T Consensus 211 wDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~--~g~a~p~g~~~g~ 288 (494)
T KOG1456|consen 211 WDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG--RGYASPGGGAPGC 288 (494)
T ss_pred ccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC--CCCCCCCCCCCCc
Confidence 2221111100 00000 0000000000000 0000 000000 1244456677889
Q ss_pred eEEEeCCCc-cCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 559 RLVIYNLPK-SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 559 ~L~V~NLP~-~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
++.|.+|.- .++-+.|..+|. .||.|..|++|+. -.|.|.|++.+..+.++|+..|||.
T Consensus 289 VmMVyGLdh~k~N~drlFNl~C---------lYGNV~rvkFmkT-----------k~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 289 VMMVYGLDHGKMNCDRLFNLFC---------LYGNVERVKFMKT-----------KPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred EEEEEeccccccchhhhhhhhh---------hcCceeeEEEeec-----------ccceeEEEcCcHHHHHHHHHHhccC
Confidence 999999964 578899999998 6999999999974 3689999999999999999999998
Q ss_pred CCCCCCCCceEEEEec
Q 002920 638 PKTFGPEHRPIVEFAV 653 (865)
Q Consensus 638 p~~fg~~~rliV~fA~ 653 (865)
+ +|| .+|-|.++.
T Consensus 349 ~-lfG--~kl~v~~Sk 361 (494)
T KOG1456|consen 349 P-LFG--GKLNVCVSK 361 (494)
T ss_pred c-ccc--ceEEEeecc
Confidence 5 687 788888885
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.52 E-value=3.9e-13 Score=140.54 Aligned_cols=200 Identities=21% Similarity=0.320 Sum_probs=141.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceE--------EEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g 265 (865)
...+.|||.|||.++|.+++.++|+.||.|. .|.|.++. .|..+|=|.|.|--.+++..|+..|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999875 47888876 49999999999999999999999999999999
Q ss_pred eeEEEEecCCCCc--cCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhh
Q 002920 266 RPIAVDWAVPKNI--YSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 343 (865)
Q Consensus 266 r~l~V~~a~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (865)
+.|+|+.|.-... +...... . ....+.. ........
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~-------------------------------------k-~k~~~~k----k~~k~q~k 248 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKE-------------------------------------K-GKCKDKK----KLKKQQQK 248 (382)
T ss_pred cEEEEehhhhhhccCcCccccc-------------------------------------c-cccccHH----HHHHHHHh
Confidence 9999998853221 0000000 0 0000000 00000000
Q ss_pred cccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCC----CCCC-
Q 002920 344 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP----FDLD- 418 (865)
Q Consensus 344 ~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP----~~vt- 418 (865)
++ +..|.... .......++|.|+||= +..+
T Consensus 249 ~~-----------------------------------dw~pd~~~----------~sk~r~~~tVi~kn~Ftp~~~~~~~ 283 (382)
T KOG1548|consen 249 LL-----------------------------------DWRPDRDD----------PSKARADRTVILKNMFTPEDFEKNP 283 (382)
T ss_pred hc-----------------------------------ccCCCccc----------cccccCCcEEEeeecCCHHHhccCH
Confidence 00 00110000 0022345799999992 2223
Q ss_pred ------HHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 419 ------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 419 ------eedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
.++|++-+++||.|.+|.|. + ..+.|.+-|.|.+.++|..||..|+ |.+|+||.|.......+
T Consensus 284 ~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~-----GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 284 DLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMD-----GRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhc-----CeeecceEEEEEEeCCc
Confidence 46788889999999998654 3 3478999999999999999999999 99999999999886544
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.52 E-value=4.3e-13 Score=132.09 Aligned_cols=209 Identities=24% Similarity=0.258 Sum_probs=130.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec-CCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec---C
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---G 479 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d-~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~---G 479 (865)
.-+||||.+||.++..-+|+.+|..|-.-..+.|-+. +.....+-+|||+|.+..+|..|+.+|| |+.|+ +
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-----GvrFDpE~~ 107 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN-----GVRFDPETG 107 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc-----CeeeccccC
Confidence 3589999999999999999999999977777655433 2223456899999999999999999999 99996 8
Q ss_pred eEEEEEEccCchhhhhhhhhhccc----ccccccchhhh-------ccccccC----CCCCCCCCCchhHHHHHHHHHHh
Q 002920 480 RQLTVLKALDKKLAHDKEIDKSKN----ETNDHRNLYLA-------KEGLILE----GTPAAEGVSDDDMSKRQMLHEKK 544 (865)
Q Consensus 480 r~L~V~~A~~k~~~~~~~~~~~~~----~~~d~~~l~l~-------~~g~i~~----~s~~~~~~s~~~~~~r~~~~~~~ 544 (865)
..|+|.+|.+....+.......-. -..+.++.... .++...+ ....+..+...+......+.. .
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a-~ 186 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA-P 186 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh-h
Confidence 899999998765443322221000 00000110000 0010000 000111111111111111100 0
Q ss_pred hhhcCCC--------CCC---CccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCC
Q 002920 545 MTKLQSP--------NFH---VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYS 613 (865)
Q Consensus 545 ~~~l~~p--------~~~---~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~s 613 (865)
..+.+.. .+. .--.+|||-||..+|||++|+.+|+. |.....++|--. ..
T Consensus 187 ~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~---------~~gf~~l~~~~~----------~g 247 (284)
T KOG1457|consen 187 DSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR---------YPGFHILKIRAR----------GG 247 (284)
T ss_pred hhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh---------CCCceEEEEecC----------CC
Confidence 0111110 111 01137999999999999999999995 777766666521 23
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 614 RGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 614 rG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
-..|||+|.+.+.|..|+..|+|+
T Consensus 248 ~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 248 MPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cceEeecHHHHHHHHHHHHHhhcc
Confidence 458999999999999999999998
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.2e-13 Score=129.30 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=128.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||.++-+.+|.++|.+||.|..|.+-..+ .+.+||||+|+++-+|..||..-+ |.-++|..|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRd-----GYdydg~rLR 76 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRD-----GYDYDGCRLR 76 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccc-----ccccCcceEE
Confidence 45899999999999999999999999999999775332 357899999999999999999999 9999999999
Q ss_pred EEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEe
Q 002920 484 VLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 563 (865)
Q Consensus 484 V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~ 563 (865)
|.|+..-... .+.+..|-..-.. +... . .-..|---.|..++.|.
T Consensus 77 VEfprggr~s------------~~~~G~y~gggrg---Ggg~---g-----------------g~rgppsrrSe~RVvVs 121 (241)
T KOG0105|consen 77 VEFPRGGRSS------------SDRRGSYSGGGRG---GGGG---G-----------------GRRGPPSRRSEYRVVVS 121 (241)
T ss_pred EEeccCCCcc------------cccccccCCCCCC---CCCC---C-----------------cccCCcccccceeEEEe
Confidence 9998643211 1112222111000 0000 0 00011112244689999
Q ss_pred CCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 564 NLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 564 NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
+||..-+.++|+++..+ -|.|....+.+| |++.|+|...|+-.-|++.|...
T Consensus 122 GLp~SgSWQDLKDHmRe---------aGdvCfadv~rD-------------g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 122 GLPPSGSWQDLKDHMRE---------AGDVCFADVQRD-------------GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred cCCCCCchHHHHHHHHh---------hCCeeeeeeecc-------------cceeeeeeehhhHHHHHHhhccc
Confidence 99999999999999996 688888877764 68999999999999999999986
No 63
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=2e-12 Score=127.45 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccC-CCCCccceEEEEECCHHHHHHHHHHhCCcee---CCeeEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIA 269 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~afV~F~~~e~A~~Al~~lng~~i---~gr~l~ 269 (865)
..-++|||.+||.++..-+|+.+|..|-..+.+.|.... ....++-+|||.|.+..+|..|+..|||..| .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 446899999999999999999999998776666664322 1223568999999999999999999999999 688999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|+++.....
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999876543
No 64
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=135.78 Aligned_cols=284 Identities=18% Similarity=0.241 Sum_probs=178.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
....|..++||+..++.+|..+|...-...--+.+.....|+..|.|.|.|.+.|.-+.|++. +...++++.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 344667789999999999999998643222222222223577889999999999999999995 8888899999987664
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
...-.. .. ..++
T Consensus 138 ge~f~~-ia---------------------------------------------------------------gg~s---- 149 (508)
T KOG1365|consen 138 GEEFLK-IA---------------------------------------------------------------GGTS---- 149 (508)
T ss_pred chhheE-ec---------------------------------------------------------------CCcc----
Confidence 321000 00 0000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcc----C
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF----G 430 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~f----G 430 (865)
....+.. .....-.|.+++||+++++.++.++|.+- |
T Consensus 150 -------------------------~e~~~fl--------------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~ 190 (508)
T KOG1365|consen 150 -------------------------NEAAPFL--------------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTG 190 (508)
T ss_pred -------------------------ccCCCCC--------------CcccceEEEecCCCCCcchHHHHHhcCCCCcccC
Confidence 0000000 00112378999999999999999999633 2
Q ss_pred CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccc
Q 002920 431 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRN 510 (865)
Q Consensus 431 ~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~ 510 (865)
.+..+-.+.. .+|+..|-|||.|..+++|+.||.... ..|+-|.|.+-.....+-.+-.. .
T Consensus 191 g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khr------q~iGqRYIElFRSTaaEvqqvln--r---------- 251 (508)
T KOG1365|consen 191 GTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHR------QNIGQRYIELFRSTAAEVQQVLN--R---------- 251 (508)
T ss_pred CccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHH------HHHhHHHHHHHHHhHHHHHHHHH--h----------
Confidence 3444544444 479999999999999999999998754 34555555554332211111000 0
Q ss_pred hhhhccccccC-CCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccC
Q 002920 511 LYLAKEGLILE-GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQ 589 (865)
Q Consensus 511 l~l~~~g~i~~-~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~ 589 (865)
+ ..++.|.. ++|..-++ +. .+. | ...++.+|.+++||+..+.++|..+|.++....
T Consensus 252 -~-~s~pLi~~~~sp~~p~~-p~--------------~~~-p-~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i---- 308 (508)
T KOG1365|consen 252 -E-VSEPLIPGLTSPLLPGG-PA--------------RLV-P-PTRSKDCVRLRGLPYEATVEDILDFLGDFATDI---- 308 (508)
T ss_pred -h-ccccccCCCCCCCCCCC-cc--------------ccC-C-CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhc----
Confidence 0 00111111 11111000 00 000 1 112356899999999999999999999853322
Q ss_pred CCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 590 KPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 590 ~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
.-..|.++.+ .+|+..|-|||+|.+.|.|..|....+++
T Consensus 309 --~f~gVHmv~N-------~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 309 --RFQGVHMVLN-------GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred --ccceeEEEEc-------CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 1122666654 56799999999999999999999999986
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=6.2e-13 Score=112.11 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 408 LfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
|||+|||.++|+++|+++|+.||.|..+.++.+ .++..+|+|||+|.+.++|..|+..|+ |..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 799999999999999999999999999999987 578899999999999999999999999 9999999985
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=7.1e-13 Score=111.75 Aligned_cols=70 Identities=37% Similarity=0.668 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 199 l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|+.|+..|+|..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.7e-13 Score=134.02 Aligned_cols=84 Identities=31% Similarity=0.670 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
.....+|.|.||+.+++|++|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||.-+..-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 002920 273 AVPK 276 (865)
Q Consensus 273 a~~k 276 (865)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.1e-13 Score=134.90 Aligned_cols=167 Identities=22% Similarity=0.365 Sum_probs=131.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+.-+|..|+..||+..|.|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999988874 378999999999999999999999999988999998643
Q ss_pred CccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCc
Q 002920 277 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 356 (865)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~ 356 (865)
...... .... +. ++
T Consensus 74 ~~~~g~----------------------------------------~~~g---~r--------------------~~--- 87 (216)
T KOG0106|consen 74 RRGRGR----------------------------------------PRGG---DR--------------------RS--- 87 (216)
T ss_pred ccccCC----------------------------------------CCCC---Cc--------------------cc---
Confidence 211000 0000 00 00
Q ss_pred chhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEE
Q 002920 357 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 436 (865)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~ 436 (865)
.+... .......+.|+|.||+..+.+++|.++|++||.+.+..
T Consensus 88 ---------------------~~~~~----------------~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 88 ---------------------DSRRY----------------RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ---------------------hhhcc----------------CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 00000 00123457999999999999999999999999996553
Q ss_pred EeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEc
Q 002920 437 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 487 (865)
Q Consensus 437 i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A 487 (865)
+ ..+++||+|.+.++|.+|+..|+ |..+.|+.|.+...
T Consensus 131 ~--------~~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 131 A--------RRNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEKN 168 (216)
T ss_pred h--------hccccceeehhhhhhhhcchhcc-----chhhcCceeeeccc
Confidence 3 46799999999999999999999 99999999999443
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=4.4e-12 Score=135.56 Aligned_cols=80 Identities=34% Similarity=0.663 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+|||+.+|+++|.++|..||.|..|.+..++.+|.++|||||.|.+.++|..|+..|+|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=7.6e-13 Score=119.67 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
.+++|||+||++.++|++|+++|+.+|.|..|.+-.|+.+..+.|||||+|.+.++|..||+.++|+.+..++|+|+|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56799999999999999999999999999999999999888899999999999999999999999999999999999964
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.6e-12 Score=130.33 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|.|.||+.++++.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|| |+-++.-.|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.|+.++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=8.6e-13 Score=131.89 Aligned_cols=78 Identities=32% Similarity=0.526 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
-+.|||+||++.++.+.|+.+|++||.|+++.|+.|+.+|+++|||||+|.+.++|.+|+...| -+|+||+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~------piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN------PIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC------Cccccccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999887 7899999999
Q ss_pred EEcc
Q 002920 485 LKAL 488 (865)
Q Consensus 485 ~~A~ 488 (865)
.+|.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 9875
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=7.7e-12 Score=133.66 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=118.1
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
.++|||+|||+.+++++|.++|..||.|..|.++.++. +|.++|||||.|.+.++|..|+..++|..|.|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~---------~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE---------TGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc---------cCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 69999999999999999999999999999999988753 799999999999999999999999999999999
Q ss_pred EEEEeccC----C--------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCC
Q 002920 181 TVWARQLG----G--------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL 236 (865)
Q Consensus 181 ~i~v~~~~----~--------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~ 236 (865)
.|.|.... . .........+++.+++..++...+...|..+|.+..+.+........
T Consensus 186 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (306)
T COG0724 186 PLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKI 265 (306)
T ss_pred eeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcc
Confidence 99987631 1 01123467899999999999999999999999997777765543333
Q ss_pred ccceEEEEECCHHHHHHHHH
Q 002920 237 SKGFAFVKFTCKRDAESAIQ 256 (865)
Q Consensus 237 ~kG~afV~F~~~e~A~~Al~ 256 (865)
...+.++.+.....+..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 266 PKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccccchhHHHhhhhhhc
Confidence 44444444444444444443
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=5.9e-12 Score=106.56 Aligned_cols=70 Identities=29% Similarity=0.500 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 408 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 408 LfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|+..++ |..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~-----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN-----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC-----CcEECCEEcC
Confidence 79999999999999999999999999999999876 8899999999999999999999999 9999999984
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.7e-12 Score=131.20 Aligned_cols=146 Identities=29% Similarity=0.446 Sum_probs=124.0
Q ss_pred CEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeE
Q 002920 102 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 181 (865)
Q Consensus 102 rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~ 181 (865)
..||||+||+.+.+.+|..||..||.|..|.+ ..||+||.|.+.-+|..||..||+..|.|-.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-----------------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-----------------KNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-----------------ecccceeccCchhhhhcccchhcCceeccee
Confidence 36999999999999999999999999999988 2368999999999999999999999999987
Q ss_pred EEEeccCC---------CC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceE
Q 002920 182 VWARQLGG---------EG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 241 (865)
Q Consensus 182 i~v~~~~~---------~~-----------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~a 241 (865)
+-+..... .+ .....+.++|.||+..+.+.+|.+.|..+|.+....+ ..+++
T Consensus 65 ~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~ 136 (216)
T KOG0106|consen 65 LVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFA 136 (216)
T ss_pred eeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hcccc
Confidence 54422210 00 1234578999999999999999999999999854444 35689
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 242 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 242 fV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
||+|...++|..|+..|++..+.++.|.+..
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999999999943
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=9.5e-12 Score=105.30 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 199 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 199 l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
|||+|||+.+++++|.++|+.||.|..+.+..++. |.++|+|||+|.+.++|..|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=8.9e-12 Score=108.70 Aligned_cols=82 Identities=24% Similarity=0.407 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...+.|||+|||+.+|.++..++|..||.|..|+|=..+ ..+|.|||.|++..+|.+|+..|+ |+.+.++.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ryl 87 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRYL 87 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhc-----ccccCCceE
Confidence 346799999999999999999999999999999886444 468999999999999999999999 999999999
Q ss_pred EEEEccCchh
Q 002920 483 TVLKALDKKL 492 (865)
Q Consensus 483 ~V~~A~~k~~ 492 (865)
.|.+..+-..
T Consensus 88 ~vlyyq~~~~ 97 (124)
T KOG0114|consen 88 VVLYYQPEDA 97 (124)
T ss_pred EEEecCHHHH
Confidence 9999876543
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=5.6e-12 Score=114.13 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.++||||+||.+.++|++|.++|+.+|.|..|.+=.|+.+..+.|||||+|-+.++|..|+..++ |+.|+.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCccccccee
Confidence 46899999999999999999999999999999888888888899999999999999999999999 9999999999
Q ss_pred EEEcc
Q 002920 484 VLKAL 488 (865)
Q Consensus 484 V~~A~ 488 (865)
|.|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99954
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.6e-13 Score=127.55 Aligned_cols=83 Identities=28% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
..+.-|||+|||+.+||.+|.-+|++||.|+.|.+++|..||+++||||+.|.+..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 002920 274 VPK 276 (865)
Q Consensus 274 ~~k 276 (865)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 533
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=127.38 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|| .|| |..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLn-----G~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLS-----GATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-Hhc-----CCeeCCceEEE
Confidence 47999999999999999999999999999999988753 5799999999999999999 499 99999999999
Q ss_pred EEccC
Q 002920 485 LKALD 489 (865)
Q Consensus 485 ~~A~~ 489 (865)
.++.+
T Consensus 75 t~a~~ 79 (260)
T PLN03120 75 TPAED 79 (260)
T ss_pred EeccC
Confidence 99864
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3.4e-11 Score=133.81 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=117.5
Q ss_pred cccccccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHH
Q 002920 92 EDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVAL 171 (865)
Q Consensus 92 ~~~~~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~ 171 (865)
..++++....++|+|-|||.++++++|+.+|+.||+|..|+. +-..+|..||+|.+.-+|+.|++.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------------t~~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------------TPNKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------------ccccCceEEEEEeehHhHHHHHHH
Confidence 446677889999999999999999999999999999999876 445678899999999999999999
Q ss_pred hcCCccCCeEEEEeccCCC--------------------CC---CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEE
Q 002920 172 LHQKEIKGGTVWARQLGGE--------------------GS---KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI 228 (865)
Q Consensus 172 lng~~i~G~~i~v~~~~~~--------------------~~---~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i 228 (865)
||+..|.|+.|. ++.+.. .. ......+|+ .|++.....-+.-.|.-+|.+.. +.
T Consensus 132 l~~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~ 208 (549)
T KOG4660|consen 132 LNRREIAGKRIK-RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE 208 (549)
T ss_pred HHHHHhhhhhhc-CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc
Confidence 999999998776 221100 00 011222332 38888888777777777887764 22
Q ss_pred cccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 229 PHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 229 ~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
++.-.-.-|+.|.+..++..++..+ |..+.+....+.++.+
T Consensus 209 -----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 -----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred -----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 2222225678888888886666543 6677777777777655
No 82
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1e-11 Score=129.04 Aligned_cols=103 Identities=29% Similarity=0.437 Sum_probs=90.8
Q ss_pred hcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHH
Q 002920 172 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251 (865)
Q Consensus 172 lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A 251 (865)
-++....|..+...+...........+|+|.|||+..-+-||+.+|.+||.|.+|.|+.+. -| +||||||+|.+.++|
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~da 149 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADA 149 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhH
Confidence 3566667777777776666667778899999999999999999999999999999999864 23 899999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEecCCC
Q 002920 252 ESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 252 ~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
++|-..|||..|.||+|.|..+...
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999998765
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.7e-11 Score=127.18 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46999999999999999999999999999999998753 57999999999999999996 999999999999999854
Q ss_pred C
Q 002920 276 K 276 (865)
Q Consensus 276 k 276 (865)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=127.14 Aligned_cols=80 Identities=23% Similarity=0.513 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.-++|+|.||||..-+-||+.+|.+||.|.+|.|+.+. .-++|||||+|+++++|++|..+|| |..|.||+|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkIE 167 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELH-----GTVVEGRKIE 167 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhh-----cceeeceEEE
Confidence 34689999999999999999999999999999999874 3489999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|..|..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9999876
No 85
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.1e-12 Score=125.45 Aligned_cols=81 Identities=27% Similarity=0.453 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+.-|||+|||+++|+.||.-+|++||.|+.|.+++|..||+++||||++|.+.-+..-|+..|| |+.|.||.|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-----Giki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-----GIKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-----CceecceeEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccC
Q 002920 484 VLKALD 489 (865)
Q Consensus 484 V~~A~~ 489 (865)
|.....
T Consensus 109 VDHv~~ 114 (219)
T KOG0126|consen 109 VDHVSN 114 (219)
T ss_pred eeeccc
Confidence 987544
No 86
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=9.2e-12 Score=124.58 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+||+|.++.+.|+++|++||+|++..|+.|+.+|+++|||||+|.+.++|.+|++. -.-.|+||+..+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34567999999999999999999999999999999999999999999999999999999999985 45678999988887
Q ss_pred cC
Q 002920 273 AV 274 (865)
Q Consensus 273 a~ 274 (865)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 74
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=3e-11 Score=130.74 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCH--HHHHHHHHHhCCceeCCeeEEEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK--RDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~--e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
....+||||||++.+++++|..+|+.||.|.+|.|++ ++| +|||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999994 567 99999999987 78999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
.|.+..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998753
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-11 Score=121.50 Aligned_cols=87 Identities=28% Similarity=0.441 Sum_probs=82.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||++|...++|.-|...|-+||.|..|.++.|.++++++|||||+|.-.|+|..||..||+..+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 002920 273 AVPKNIY 279 (865)
Q Consensus 273 a~~k~~~ 279 (865)
+.|....
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9987654
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.1e-11 Score=119.09 Aligned_cols=84 Identities=32% Similarity=0.544 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
........|.|-||-+-++.++|+.+|+.||.|-+|.|++|+.|+.++|||||.|....+|+.|+++|+|..|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 002920 271 DWAV 274 (865)
Q Consensus 271 ~~a~ 274 (865)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9875
No 90
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.6e-11 Score=115.88 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+||+..+++.+|..+|..||+|.+|+|.++ ..|||||+|.++-+|+.|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34679999999999999999999999999999999875 4699999999999999999999999999999999998
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
.-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6543
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.19 E-value=9.1e-11 Score=98.25 Aligned_cols=72 Identities=38% Similarity=0.565 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
+|||+|||..++.++|+++|..||.|..+.++.+. +.++|+|||+|.+.++|..|+..++ |..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEeeC
Confidence 58999999999999999999999999999888775 6789999999999999999999999 999999999873
No 92
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=6.7e-11 Score=121.74 Aligned_cols=82 Identities=23% Similarity=0.456 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
.+-+||||.-|+++++|..|+..|+.||.|..|+||.+..||+++|||||+|.+.-+...|.+..+ |+.|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-----G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-----GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-----CceecCcEE
Confidence 445899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccC
Q 002920 483 TVLKALD 489 (865)
Q Consensus 483 ~V~~A~~ 489 (865)
.|.+-.-
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 9998543
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=6.7e-11 Score=128.12 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCH--HHHHHHHHHhcCCCCCCeEecCe
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV--EAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~--e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
..+.+|||+||++++|+++|..+|+.||.|..|.|+ +.+| +|||||+|.+. .++.+||..|| |..+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLN-----GAEWKGR 78 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGG 78 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhc-----CCeecCc
Confidence 345799999999999999999999999999999998 4466 99999999987 78999999999 9999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
.|.|..|.+.
T Consensus 79 ~LKVNKAKP~ 88 (759)
T PLN03213 79 RLRLEKAKEH 88 (759)
T ss_pred eeEEeeccHH
Confidence 9999999874
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.17 E-value=9e-11 Score=119.79 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+||++.+|+++|+++|+.||.|.+|.|+++. ...|||||+|.++++|+.||. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 456899999999999999996 99999999999998764
No 95
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=3.8e-11 Score=117.28 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
-.+|.|-||-+-++.++|+.+|++||.|-.|.|+.|..|+.++|||||.|....+|+.|+++|+ |.+|+|+.|.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgRelrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGRELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccceeee
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEcc
Q 002920 485 LKAL 488 (865)
Q Consensus 485 ~~A~ 488 (865)
.+|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9975
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=101.62 Aligned_cols=83 Identities=28% Similarity=0.467 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
++.-.+.|||+|||+++|.+++.++|..||.|..|+|-..+. .+|-|||.|.+..+|.+|+..|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 345567899999999999999999999999999999977544 58999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
+.++..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 987654
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.17 E-value=3.1e-10 Score=127.64 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=123.0
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
.+-|-+.+.++..+..++++||-.. .|-++.|..+.. .+...|.+||.|....++.+|+. -|.+.+-.|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v---------~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R 379 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRV---------APPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNR 379 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhc---------CCCcCCceEEEecCcchHHHHHh-cCchhhhhc
Confidence 4557778999999999999998753 445555533321 23336779999999999999988 566666666
Q ss_pred EEEEeccCCC---------------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q 002920 181 TVWARQLGGE---------------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 221 (865)
Q Consensus 181 ~i~v~~~~~~---------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G 221 (865)
.+.+.+.+.. ....-..+|||..||..+++.++.++|...-
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 6654322100 0122357899999999999999999999877
Q ss_pred ceEE-EEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 222 LVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 222 ~I~~-v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
.|++ |.|-+-+ +++.++.|||.|..++.+..|+..-+.+.++.+.|+|.....+.
T Consensus 460 ~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 460 AVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred hhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 7776 6665544 68889999999999999999988767778889999998765443
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=4.1e-11 Score=134.24 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=79.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.+|.++||||++|.+.++|..|++.|| |..+.||+|.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-----g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-----GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-----CcccCCceEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccCchh
Q 002920 486 KALDKKL 492 (865)
Q Consensus 486 ~A~~k~~ 492 (865)
|+.....
T Consensus 94 ~~~~~~~ 100 (435)
T KOG0108|consen 94 YASNRKN 100 (435)
T ss_pred cccccch
Confidence 9876544
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=5.2e-11 Score=108.68 Aligned_cols=85 Identities=26% Similarity=0.545 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
.-..+.|||.++...+||++|.+.|..||+|..|.+..|+.||-.+|||+|+|.+.++|+.|+..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+..+.
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 96543
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.7e-11 Score=108.42 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...+..|||.++..+.|+++|.+.|..||.|..+.+-.|..||..+|||+|+|.+.++|+.|+.+|| |..|.|.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-----g~~ll~q~ 143 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-----GAELLGQN 143 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-----chhhhCCc
Confidence 4457899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.|+..+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999998754
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4e-12 Score=146.60 Aligned_cols=237 Identities=19% Similarity=0.155 Sum_probs=186.8
Q ss_pred ccCCCCEEEEcCCCCcccHH-HHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC
Q 002920 97 KQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 175 (865)
Q Consensus 97 ~~~~~rtVfV~nLp~~~te~-~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~ 175 (865)
.+...+...+.|+.+..... .++..|..+|.|..|+++.... .-....++++++....+++.|.. ..+.
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~---------k~h~q~~~~~~~s~~~~~esat~-pa~~ 636 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF---------KAHEQPQQQKVQSKHGSAESATV-PAGG 636 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc---------cccccchhhhhhccccchhhccc-cccc
Confidence 33556677778887777665 5677999999999999975321 11122278999999999999977 7788
Q ss_pred ccCCeEEEEeccCCCCC----------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEE
Q 002920 176 EIKGGTVWARQLGGEGS----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 245 (865)
Q Consensus 176 ~i~G~~i~v~~~~~~~~----------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F 245 (865)
.+.++.+-+........ .....++||+||+..+.+.+|...|..+|.+..+++......++.+|+|||.|
T Consensus 637 ~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F 716 (881)
T KOG0128|consen 637 ALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEF 716 (881)
T ss_pred ccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEe
Confidence 78888776643322111 12345789999999999999999999999988887765556789999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCC
Q 002920 246 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLP 325 (865)
Q Consensus 246 ~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 325 (865)
..++++.+||....++.++
T Consensus 717 ~~~~~~~aaV~f~d~~~~g------------------------------------------------------------- 735 (881)
T KOG0128|consen 717 LKPEHAGAAVAFRDSCFFG------------------------------------------------------------- 735 (881)
T ss_pred ecCCchhhhhhhhhhhhhh-------------------------------------------------------------
Confidence 9999999999853332221
Q ss_pred CCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCC
Q 002920 326 SNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQ 405 (865)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~ 405 (865)
.
T Consensus 736 -------------------------------------------------------------------------------K 736 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------K 736 (881)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
..|||.|+|+..|.++|+.+|+.+|.+.+.+++... .|+++|.|||.|.++.+|.+++..+. +..+.-+.+.|.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d-----~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD-----VAGKRENNGEVQ 810 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccch-----hhhhhhcCcccc
Confidence 269999999999999999999999999999887775 79999999999999999999999888 777777777776
Q ss_pred EccC
Q 002920 486 KALD 489 (865)
Q Consensus 486 ~A~~ 489 (865)
...+
T Consensus 811 vsnp 814 (881)
T KOG0128|consen 811 VSNP 814 (881)
T ss_pred ccCC
Confidence 6544
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.5e-10 Score=118.12 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+++. ...+||||+|.++++|..|+ .|+ |..|.|++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLn-----Ga~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLS-----GATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcC-----CCeeCCceEE
Confidence 35799999999999999999999999999999999874 45689999999999999999 789 9999999999
Q ss_pred EEEccC
Q 002920 484 VLKALD 489 (865)
Q Consensus 484 V~~A~~ 489 (865)
|..+..
T Consensus 75 It~~~~ 80 (243)
T PLN03121 75 ITRWGQ 80 (243)
T ss_pred EEeCcc
Confidence 999764
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=1.8e-10 Score=96.48 Aligned_cols=72 Identities=44% Similarity=0.790 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
+|||+|||..+++++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999999999999998873
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.5e-10 Score=96.45 Aligned_cols=71 Identities=38% Similarity=0.550 Sum_probs=66.8
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 410 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 410 V~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|+ +..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-----~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-----GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-----CCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999 999999999873
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2e-10 Score=118.35 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
..+..||||.-|+++++|..|+..|+.||+|..|.|++|..||+++|||||+|..+-+...|.+..+|..|.|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 002920 273 AVP 275 (865)
Q Consensus 273 a~~ 275 (865)
-.-
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 643
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=2.4e-10 Score=95.28 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 201 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 201 V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888778999999999999999999999999999999998873
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.2e-11 Score=116.56 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=78.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
-++|||++|..++|+.-|...|-+||.|..|.+++|.++++++|||||+|...|+|..||..|| +..|.||.|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCch
Q 002920 485 LKALDKK 491 (865)
Q Consensus 485 ~~A~~k~ 491 (865)
.+|.|..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9998753
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=7.4e-10 Score=93.22 Aligned_cols=74 Identities=39% Similarity=0.551 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 486 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~ 486 (865)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .+.|+|||+|.+.++|..|+..++ +..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEeC
Confidence 4899999999999999999999999999999877644 679999999999999999999999 9999999999864
No 109
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=3.5e-10 Score=108.31 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..+.|||+||+..+++.||...|..||.|.+|-|... +.|||||+|+++-+|..|+..|+ |..|.|..|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcC-----CccccCceEE
Confidence 4689999999999999999999999999999977654 58999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.+..-.
T Consensus 79 VE~S~G~ 85 (195)
T KOG0107|consen 79 VELSTGR 85 (195)
T ss_pred EEeecCC
Confidence 9997543
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.08 E-value=1.9e-10 Score=128.92 Aligned_cols=81 Identities=32% Similarity=0.593 Sum_probs=78.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
+.|||||+|+++++++|..+|+..|.|.+++++.|+++|+++||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 002920 277 N 277 (865)
Q Consensus 277 ~ 277 (865)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=1.3e-09 Score=91.66 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ ..+|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887643 6789999999999999999999999999999999874
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8.5e-09 Score=114.05 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=116.5
Q ss_pred cCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC--
Q 002920 98 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-- 175 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~-- 175 (865)
.+-++.||||+||++++|++|...|..||.+. |..+.... ..+.....-+.||+|+.|+++.++..-|.++.-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~---~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKAN---SRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCcc---ccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 35678999999999999999999999999864 45543211 1111111112259999999999998877765321
Q ss_pred ---------ccCCeEEEEecc---------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhc-CCCceEEEEEcccCCCCC
Q 002920 176 ---------EIKGGTVWARQL---------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFS-PVGLVWNVYIPHNTDTGL 236 (865)
Q Consensus 176 ---------~i~G~~i~v~~~---------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg~ 236 (865)
.+..+.+.+++- .....-.+.+|||||+||.-++-++|..+|. -||.|.-+-|-.|++-+-
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 111222222221 1223346788999999999999999999999 599999999999987788
Q ss_pred ccceEEEEECCHHHHHHHHHH
Q 002920 237 SKGFAFVKFTCKRDAESAIQK 257 (865)
Q Consensus 237 ~kG~afV~F~~~e~A~~Al~~ 257 (865)
.+|-|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 999999999999999999984
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.96 E-value=2.2e-09 Score=90.92 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=55.9
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeecCCC--CCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 419 NEEVKQRFS----AFGEVVSFV-PVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 419 eedL~e~Fs----~fG~V~sv~-i~~d~~~--g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
+++|+++|+ .||.|.+|. |++++.+ +.++|||||+|.+.++|.+|+..|| |..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 578899998 999999995 7777766 8999999999999999999999999 99999999986
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=2.9e-09 Score=86.00 Aligned_cols=56 Identities=34% Similarity=0.497 Sum_probs=50.2
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEc
Q 002920 422 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 487 (865)
Q Consensus 422 L~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A 487 (865)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..|| |..++|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEC
Confidence 78999999999999876432 6999999999999999999999 99999999999986
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.4e-10 Score=112.78 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=122.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...|||||+|+-..++++-|.++|-..|+|..|.|+.. +++..+ ||||.|.++-++.-|+..+||..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~----------~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG----------QDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC----------ccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 45689999999999999999999999999999999776 356666 9999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcC----CCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHH
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRN----IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~n----Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~A 254 (865)
+..+.+ +++.++ |...++++.+...|+..|++..+++..+.. |+++.++|+.+.-....-.+
T Consensus 76 ~~e~q~-------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 76 EDEEQR-------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred cchhhc-------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 998877 344555 777899999999999999999999998864 88999999999888777778
Q ss_pred HHHhCCceeC
Q 002920 255 IQKFNGQKFG 264 (865)
Q Consensus 255 l~~lng~~i~ 264 (865)
+....+....
T Consensus 142 ~~~y~~l~~~ 151 (267)
T KOG4454|consen 142 LDLYQGLELF 151 (267)
T ss_pred hhhhcccCcC
Confidence 7766655543
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.7e-08 Score=111.76 Aligned_cols=172 Identities=23% Similarity=0.311 Sum_probs=120.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC-C--Cccc---eEEEEECCHHHHHHHHHHhCCceeC
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-G--LSKG---FAFVKFTCKRDAESAIQKFNGQKFG 264 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t-g--~~kG---~afV~F~~~e~A~~Al~~lng~~i~ 264 (865)
....-.+.|||++||++++|+.|...|..||.+. |..+..... + ..+| |+|+.|.++.++..-|.... ..
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EG 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hc
Confidence 3455678999999999999999999999999987 666642211 1 2456 99999999999887666432 24
Q ss_pred CeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhc
Q 002920 265 KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKL 344 (865)
Q Consensus 265 gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (865)
...+.+..+.+...-.. ...-. -...+.+|..
T Consensus 330 ~~~~yf~vss~~~k~k~-----------------------------------VQIrP-W~laDs~fv~------------ 361 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKE-----------------------------------VQIRP-WVLADSDFVL------------ 361 (520)
T ss_pred ccceEEEEecCcccccc-----------------------------------eeEEe-eEeccchhhh------------
Confidence 55555554433210000 00000 0000000000
Q ss_pred ccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 002920 345 TSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQ 424 (865)
Q Consensus 345 ~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e 424 (865)
. .. ..-.+.+||||++||--++-++|-.
T Consensus 362 -----------------d--------------------------~s---------q~lDprrTVFVGgvprpl~A~eLA~ 389 (520)
T KOG0129|consen 362 -----------------D--------------------------HN---------QPIDPRRTVFVGGLPRPLTAEELAM 389 (520)
T ss_pred -----------------c--------------------------cC---------cccCccceEEecCCCCcchHHHHHH
Confidence 0 00 0122457999999999999999999
Q ss_pred Hhh-ccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002920 425 RFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 466 (865)
Q Consensus 425 ~Fs-~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ 466 (865)
+|. .||.|.++-|-.|++-+.++|-|-|+|.+..+-.+||.+
T Consensus 390 imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 390 IMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999 799999999999988999999999999999999999976
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.93 E-value=4.7e-09 Score=84.76 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=51.0
Q ss_pred HHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 213 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 213 L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
|+++|++||.|..|.+..+. +++|||+|.+.++|..|+..|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997642 689999999999999999999999999999999986
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.92 E-value=1.7e-09 Score=116.20 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=135.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC-cc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EI 177 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~-~i 177 (865)
....++|++++.+.+.+.++..++..+|.+..+.+.... ....++||++|.|...+.+..|+. +.+. .+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---------~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~ 155 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---------DSLSSKGGLSVHFAGKSQFFAALE-ESGSKVL 155 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc---------cccccccceeeccccHHHHHHHHH-hhhcccc
Confidence 467899999999999999888999999987777664332 367889999999999999999998 5553 44
Q ss_pred CCeEEEE-----ec-----cCCCCCCCCCcEEE-EcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEEC
Q 002920 178 KGGTVWA-----RQ-----LGGEGSKTQKWKLI-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 246 (865)
Q Consensus 178 ~G~~i~v-----~~-----~~~~~~~~~~~~l~-V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~ 246 (865)
.++.+.. +. ...........++| |+||++.+++++|+.+|..+|.|..++++.++.++.++|||||.|.
T Consensus 156 ~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 156 DGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred ccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 4443321 11 01111223444555 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 247 CKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 247 ~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
....+..++.. ....+.++++.|.+..+..
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999999986 7888999999999876553
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.90 E-value=4e-09 Score=89.37 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=55.2
Q ss_pred HHHHHHhhc----CCCceEEEE-EcccCCC--CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 210 VNEIKDMFS----PVGLVWNVY-IPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 210 ee~L~~~F~----~~G~I~~v~-i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||.|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 6666666 889999999999999999999999999999999976
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-09 Score=112.74 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
++.+.|||.-|.+-+|+++|.-+|+.||.|.+|.|++|..||.+-.||||+|.+.+++.+|.-.|+ +..|+++.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrRI 311 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRRI 311 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccceE
Confidence 456799999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
+|.|.++-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997654
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.84 E-value=7.5e-08 Score=108.88 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCC-EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~-tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
.+++ .|-|.|+|++++-+||.+||..|-.+-.-.+++..+.|.++|-|.|.|++.++|.+|...|+ +..|..|.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~-----~~~i~nr~ 938 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLD-----GQKIRNRV 938 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccc-----cCccccee
Confidence 3455 89999999999999999999999776554455555789999999999999999999999999 99999999
Q ss_pred EEEEE
Q 002920 482 LTVLK 486 (865)
Q Consensus 482 L~V~~ 486 (865)
|++..
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 98864
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2.9e-09 Score=123.85 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=136.8
Q ss_pred ccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCc
Q 002920 97 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 176 (865)
Q Consensus 97 ~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~ 176 (865)
..+..+|||+|||+..+++.+|+..|..+|.|.+|.|-... -+.-.-||||.|.+...+-.|...+.+..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----------~~~esa~~f~~~~n~dmtp~ak~e~s~~~ 437 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----------IKTESAYAFVSLLNTDMTPSAKFEESGPL 437 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----------CCcccchhhhhhhccccCcccchhhcCCc
Confidence 34678999999999999999999999999999999996552 35556789999999999999999898887
Q ss_pred cCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHH
Q 002920 177 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256 (865)
Q Consensus 177 i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~ 256 (865)
|....+.+.-.. ......+.++|++|+.++....|...|..||.|..|.+-. ..-||||.|.+...|+.|+.
T Consensus 438 I~~g~~r~glG~--~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 438 IGNGTHRIGLGQ--PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccCcccccccc--cccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHH
Confidence 766655543321 1456778999999999999999999999999999877632 34599999999999999999
Q ss_pred HhCCceeCC--eeEEEEecCCCC
Q 002920 257 KFNGQKFGK--RPIAVDWAVPKN 277 (865)
Q Consensus 257 ~lng~~i~g--r~l~V~~a~~k~ 277 (865)
.|.|..|+| +.|+|.++.+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HHhcCcCCCCCcccccccccCCC
Confidence 999999965 678888886543
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.4e-10 Score=131.01 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=129.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
+...++||+||++.+.+.+|...|..+|.+..|++..- ...++.+|+|||.|...+++.+||....+. +.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h---------~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~ 734 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH---------KNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FF 734 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH---------hhccccccceeeEeecCCchhhhhhhhhhh-hh
Confidence 55678999999999999999999999999888877311 247889999999999999999999944444 44
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
| ...|||.|+|+..|.++|+.+|..+|.+.+++++..+ .|+.+|.|||.|.++.+|.+++...
T Consensus 735 g----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 735 G----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred h----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccc
Confidence 3 3478999999999999999999999999999987765 6999999999999999999999988
Q ss_pred CCceeCCeeEEEEecCC
Q 002920 259 NGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 259 ng~~i~gr~l~V~~a~~ 275 (865)
++..+..+.+.|..+.|
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 88888877788877665
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8.5e-09 Score=108.20 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
.++.+.|||.-|.+-+|.++|.-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-.|++..|..+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
++.-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.74 E-value=2.5e-08 Score=98.46 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~f-G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
.....++|..+|..+.+.+|..+|.+| |.|..+++-++..||.++|||||+|++.+.|.-|.+.|| ++.|.|+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~l 121 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHL 121 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhhe
Confidence 344579999999999999999999999 778888888999999999999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.+-.+-
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999996543
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.70 E-value=3.6e-08 Score=97.34 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
.....+||..+|..+.+.+|..+|.+| |.|..+++.++..||.++|||||+|.+.+.|.-|-+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445689999999999999999999998 7888889989999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 002920 273 AVPK 276 (865)
Q Consensus 273 a~~k 276 (865)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7554
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.66 E-value=2.1e-08 Score=107.88 Aligned_cols=177 Identities=18% Similarity=0.222 Sum_probs=138.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc-eeCCeeEEEEec
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-KFGKRPIAVDWA 273 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~-~i~gr~l~V~~a 273 (865)
...++|++++.+.+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..||.. .+. .+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCccc
Confidence 466899999999999999999999999888887777667788999999999999999999984 553 445554444332
Q ss_pred CCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002920 274 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 353 (865)
Q Consensus 274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps 353 (865)
.....+.. +...
T Consensus 166 ~~~~~~~~-------------------------------------------------------------n~~~------- 177 (285)
T KOG4210|consen 166 TRRGLRPK-------------------------------------------------------------NKLS------- 177 (285)
T ss_pred cccccccc-------------------------------------------------------------chhc-------
Confidence 21110000 0000
Q ss_pred CCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCee
Q 002920 354 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 433 (865)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~ 433 (865)
........+.++|.||++.+++++|+.+|..+|.|.
T Consensus 178 --------------------------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~ 213 (285)
T KOG4210|consen 178 --------------------------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT 213 (285)
T ss_pred --------------------------------------------ccccCccccceeecccccccchHHHhhhccCcCcce
Confidence 000111223455999999999999999999999999
Q ss_pred EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 434 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 434 sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
.++++.++.++.++|||||.|.....+..++.. . ...+.|+++.|.+..+.
T Consensus 214 ~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 214 SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-----TRSIGGRPLRLEEDEPR 264 (285)
T ss_pred eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-----cCcccCcccccccCCCC
Confidence 999999999999999999999999999999987 7 78999999999997765
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=8.7e-09 Score=101.89 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=117.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||.||...++|+-|.++|-+.|+|..|.|+.+.. +..+ ||||.|.++-++.-|+..|||..+.+..+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345678999999999999999999999999999999988764 5566 99999999999999999999999988888876
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
+-.-..
T Consensus 83 ~r~G~s-------------------------------------------------------------------------- 88 (267)
T KOG4454|consen 83 LRCGNS-------------------------------------------------------------------------- 88 (267)
T ss_pred cccCCC--------------------------------------------------------------------------
Confidence 531000
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 431 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~ 431 (865)
.. -|...++++.+...|+.-|.
T Consensus 89 -----------------------------------------------------ha-----pld~r~~~ei~~~v~s~a~p 110 (267)
T KOG4454|consen 89 -----------------------------------------------------HA-----PLDERVTEEILYEVFSQAGP 110 (267)
T ss_pred -----------------------------------------------------cc-----hhhhhcchhhheeeecccCC
Confidence 00 14556788889999999999
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
+..+++..+. +|+++.++||.+.-.-+.-.++....
T Consensus 111 ~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 111 IEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred CCCccccccc-cCCccCccchhhhhhhcCcHHhhhhc
Confidence 9999998886 58899999999987777777777666
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=3.4e-08 Score=100.02 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
..||++.|..+++++-|-..|.+|-.....+++++..||+++||+||.|.++.++.+|+.+|+ |.+++.|+|.+.
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-----gkyVgsrpiklR 265 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-----GKYVGSRPIKLR 265 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc-----ccccccchhHhh
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999886
Q ss_pred Ecc
Q 002920 486 KAL 488 (865)
Q Consensus 486 ~A~ 488 (865)
-..
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 543
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=3.4e-08 Score=100.01 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=123.9
Q ss_pred CCEEEEcCCCCcccHHH-H--HHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 101 ARTVIIGGLLNADMAEE-V--HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~-L--~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
....|++++-..+..+- | ...|+.+-......++.+ +-+..++++|+.|.....-.++-..-+++.+
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~----------~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki 165 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD----------RPQPIRPEAFESFKASDALLKAETEKEKKKI 165 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhc----------CCCccCcccccCcchhhhhhhhccccccccc
Confidence 44566777655554333 2 556666554444444433 3467789999999988887777666677766
Q ss_pred CCeEEEEecc------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHH
Q 002920 178 KGGTVWARQL------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251 (865)
Q Consensus 178 ~G~~i~v~~~------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A 251 (865)
.-..|+.... ..........+||.+.|.-+++.+.|-..|..|-.....+++++..||+++||+||.|.+..++
T Consensus 166 ~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 166 GKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred cCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 6555443221 1122356678999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEec
Q 002920 252 ESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 252 ~~Al~~lng~~i~gr~l~V~~a 273 (865)
..|+..|+|..++.++|.+.-+
T Consensus 246 ~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHHhhcccccccchhHhhhh
Confidence 9999999999999999988654
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.1e-07 Score=105.12 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
....+++|+|.+|...+--.+|+.+|++||.|+-++|+.+..+.-.++|+||++.+.++|.+||..|+ ...|+|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGr 475 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGR 475 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcce
Confidence 45678999999999999999999999999999999999887676789999999999999999999999 8999999
Q ss_pred EEEEEEccC
Q 002920 481 QLTVLKALD 489 (865)
Q Consensus 481 ~L~V~~A~~ 489 (865)
.|.|..|..
T Consensus 476 mISVEkaKN 484 (940)
T KOG4661|consen 476 MISVEKAKN 484 (940)
T ss_pred eeeeeeccc
Confidence 999999865
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=2e-07 Score=98.42 Aligned_cols=80 Identities=28% Similarity=0.410 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.+..-.+|||++|-..+++.+|+++|.+||.|.++.++.. +++|||+|.+.++|+.|....-. -+.|+|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n----~lvI~G~ 293 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN----KLVINGF 293 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc----eeeecce
Confidence 4555689999999889999999999999999999988744 57999999999999999877541 6788999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
+|.|.|..++
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999998873
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=2e-07 Score=107.10 Aligned_cols=79 Identities=19% Similarity=0.429 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++||||++||..+++.||.++|+.||.|.+|.++ .++|+|||++.+..+|.+|+.+|+ ...+.++.
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~ 486 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLS-----NVKVADKT 486 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHh-----ccccccee
Confidence 3457899999999999999999999999999999765 258999999999999999999999 89999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|+|.||..+-
T Consensus 487 Iki~Wa~g~G 496 (894)
T KOG0132|consen 487 IKIAWAVGKG 496 (894)
T ss_pred eEEeeeccCC
Confidence 9999998763
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2.2e-07 Score=106.78 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
-++||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||.+....+|.+||.+|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 368999999999999999999999999999999865 57999999999999999999999999999999999998
Q ss_pred CCCccC
Q 002920 275 PKNIYS 280 (865)
Q Consensus 275 ~k~~~~ 280 (865)
.+....
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 765443
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=1.1e-07 Score=111.05 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=132.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
+...+++||++||+..+++.+|+..|..||.|..|.|-... -+...-||||.|-+...+-.|+..+. +..|..-
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s-----~~~I~~g 441 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEES-----GPLIGNG 441 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhc-----CCccccC
Confidence 44567899999999999999999999999999999876543 34456799999999999999999988 7777655
Q ss_pred EEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeE
Q 002920 481 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 560 (865)
Q Consensus 481 ~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L 560 (865)
.+.+.+...+ ....+.+
T Consensus 442 ~~r~glG~~k---------------------------------------------------------------st~ttr~ 458 (975)
T KOG0112|consen 442 THRIGLGQPK---------------------------------------------------------------STPTTRL 458 (975)
T ss_pred cccccccccc---------------------------------------------------------------cccceee
Confidence 5555543221 0124789
Q ss_pred EEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 561 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT 640 (865)
Q Consensus 561 ~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~ 640 (865)
++++|+.++....|...|.. ||.|..|.+- +.--||+|.|.+...|+.|++.|-|.| +
T Consensus 459 ~sgglg~w~p~~~l~r~fd~---------fGpir~Idy~------------hgq~yayi~yes~~~aq~a~~~~rgap-~ 516 (975)
T KOG0112|consen 459 QSGGLGPWSPVSRLNREFDR---------FGPIRIIDYR------------HGQPYAYIQYESPPAAQAATHDMRGAP-L 516 (975)
T ss_pred ccCCCCCCChHHHHHHHhhc---------cCcceeeecc------------cCCcceeeecccCccchhhHHHHhcCc-C
Confidence 99999999999999999995 9999986554 345699999999999999999999996 4
Q ss_pred CCCCCceEEEEec
Q 002920 641 FGPEHRPIVEFAV 653 (865)
Q Consensus 641 fg~~~rliV~fA~ 653 (865)
=+..+++.|.||.
T Consensus 517 G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 517 GGPPRRLRVDLAS 529 (975)
T ss_pred CCCCccccccccc
Confidence 5666788899995
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=9e-07 Score=93.61 Aligned_cols=77 Identities=30% Similarity=0.432 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHH-hCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK-FNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~-lng~~i~gr~l~V~ 271 (865)
.....+|||++|-..++|.+|+++|-+||.|.+|.+.. .+|+|||+|.+.+.|+.|... +|...|.|+.|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 44567999999999999999999999999999999976 356999999999999998875 45566799999999
Q ss_pred ecCC
Q 002920 272 WAVP 275 (865)
Q Consensus 272 ~a~~ 275 (865)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=2.1e-06 Score=76.73 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcC--CCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC----CeeEEE
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAV 270 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~----gr~l~V 270 (865)
++|.|+|||...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988876 567888999999999999999999999999999999999999884 567888
Q ss_pred EecCC
Q 002920 271 DWAVP 275 (865)
Q Consensus 271 ~~a~~ 275 (865)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88753
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.33 E-value=1.4e-06 Score=90.64 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|+|.|||+.+++++|+++|..||.+..+.|.+++ +|.+.|.|-|.|...++|..|++.+||..+.|++|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3455789999999999999999999999999999998886 699999999999999999999999999999999999988
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 766543
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=7.3e-06 Score=73.30 Aligned_cols=82 Identities=23% Similarity=0.266 Sum_probs=67.7
Q ss_pred cCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcC
Q 002920 557 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 636 (865)
Q Consensus 557 ~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng 636 (865)
+|+|.|+|||...|.++|.+++... -.|...-+.++.|..++ -+.|||||.|.+++.|..-...++|
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~-------~~g~yDF~YLPiDf~~~------~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEH-------FKGKYDFFYLPIDFKNK------CNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHh-------ccCcceEEEeeeeccCC------CceEEEEEEcCCHHHHHHHHHHHcC
Confidence 4789999999999999999999864 25888889999887665 7899999999999999999999999
Q ss_pred CCCCC--CCCCceEEEEe
Q 002920 637 NPKTF--GPEHRPIVEFA 652 (865)
Q Consensus 637 ~p~~f--g~~~rliV~fA 652 (865)
.+ |- .+.+..-|.||
T Consensus 68 ~~-w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 68 KK-WPNFNSKKVCEISYA 84 (97)
T ss_pred Cc-cccCCCCcEEEEehh
Confidence 73 42 33232338888
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.30 E-value=2e-06 Score=89.37 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
...|+|.|||+.|+++||+++|..||.+..+-|-+++ .|.+.|+|-|.|...++|.+|++.+| |+.++|++|.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~ 156 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKI 156 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeee
Confidence 3689999999999999999999999988888777775 89999999999999999999999999 99999999999
Q ss_pred EEccCchhh
Q 002920 485 LKALDKKLA 493 (865)
Q Consensus 485 ~~A~~k~~~ 493 (865)
....+....
T Consensus 157 ~~i~~~~~~ 165 (243)
T KOG0533|consen 157 EIISSPSQS 165 (243)
T ss_pred EEecCcccc
Confidence 987765544
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.29 E-value=5.3e-07 Score=96.26 Aligned_cols=193 Identities=17% Similarity=0.151 Sum_probs=120.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC---CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
.|.|.||.+.+|.++++.||...|.|..+.|+..... ......|||.|.+...+..|-. |.++.|-++.|.|..+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7899999999999999999999999999998764322 2345689999999999998866 78888888888776653
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
...... .|...+-......+.++...|.+|..
T Consensus 88 ~~~~p~------------------------------------------------r~af~~l~~~navprll~pdg~Lp~~ 119 (479)
T KOG4676|consen 88 DEVIPD------------------------------------------------RFAFVELADQNAVPRLLPPDGVLPGD 119 (479)
T ss_pred CCCCcc------------------------------------------------HHHHHhcCcccccccccCCCCccCCC
Confidence 221100 00000000001111122212222111
Q ss_pred Ccch---hhhcCCCCCCchhhhhhhccccccccccCCCCCCCCcccc---CCCCCCCCEEEEcCCCCCCCHHHHHHHhhc
Q 002920 355 SDDS---ALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQT---EGEDELQNTIFICNLPFDLDNEEVKQRFSA 428 (865)
Q Consensus 355 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~---~~~~~~~~tLfV~NLP~~vteedL~e~Fs~ 428 (865)
.... +.+... ..++.+.+. ..-....++|+|.+|+..+...++.+.|..
T Consensus 120 ~~lt~~nh~p~ai-------------------------lktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r 174 (479)
T KOG4676|consen 120 RPLTKINHSPNAI-------------------------LKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFER 174 (479)
T ss_pred CccccccCCccce-------------------------ecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhh
Confidence 1000 000000 000000000 011222478999999999999999999999
Q ss_pred cCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 429 FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 429 fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
||.|.+.++. .+....+|.|.|....+...|+..++
T Consensus 175 ~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 175 KGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred cchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcc
Confidence 9999998764 34456688899998888888886653
No 142
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.27 E-value=1.2e-06 Score=97.05 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.-.++|||.+|...+--.+|+.+|+.||.|+...|+.+..+.-.++|+||++.+.++|.+||..|+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34679999999999999999999999999999999988777668999999999999999999999999999999999988
Q ss_pred CCC
Q 002920 274 VPK 276 (865)
Q Consensus 274 ~~k 276 (865)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 643
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.17 E-value=2.8e-06 Score=95.21 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
..+|||+|||++++..+|.++|..||.|+...|......+...+||||+|.+.++++.||.+- -..|+|++|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeEEE
Confidence 455999999999999999999999999999888765433444599999999999999999875 48999999999
Q ss_pred EEccC
Q 002920 485 LKALD 489 (865)
Q Consensus 485 ~~A~~ 489 (865)
.--.+
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 87554
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.14 E-value=5.8e-06 Score=94.42 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~---~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
++..++|||.||++.++++.|...|..||+|.+++|+.... ..+.+.+|||.|.+..+|++|+..|+ |..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceeee
Confidence 55678999999999999999999999999999999987652 34567899999999999999999999 99999
Q ss_pred CeEEEEEEcc
Q 002920 479 GRQLTVLKAL 488 (865)
Q Consensus 479 Gr~L~V~~A~ 488 (865)
+..+.+.|+.
T Consensus 246 ~~e~K~gWgk 255 (877)
T KOG0151|consen 246 EYEMKLGWGK 255 (877)
T ss_pred eeeeeecccc
Confidence 9999999973
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.12 E-value=1.3e-06 Score=93.37 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=119.2
Q ss_pred CEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeE
Q 002920 102 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 181 (865)
Q Consensus 102 rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~ 181 (865)
.-|.|.||.+.+|.++++.||.-.|.|..++++.... ...-......|||.|.+...+..|-. |.+++|-++.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~------d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdra 80 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVD------DSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRA 80 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCC------CccCcceeeeEEEeccCCcceeHHhh-hccceeeeee
Confidence 3799999999999999999999999999999865422 11123345679999999999988855 9999999998
Q ss_pred EEEeccCCCCC--------------------------------------------------------CCCCcEEEEcCCC
Q 002920 182 VWARQLGGEGS--------------------------------------------------------KTQKWKLIIRNIP 205 (865)
Q Consensus 182 i~v~~~~~~~~--------------------------------------------------------~~~~~~l~V~nLp 205 (865)
|.|.++..... ..-.++|+|.+|+
T Consensus 81 liv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~ 160 (479)
T KOG4676|consen 81 LIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLI 160 (479)
T ss_pred EEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcch
Confidence 88766432100 0113679999999
Q ss_pred CCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC
Q 002920 206 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 264 (865)
Q Consensus 206 ~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~ 264 (865)
..+...++.++|..+|.|....+. .|...-||.|.|....+...|+. ++|..+.
T Consensus 161 ~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 161 SAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999999998866653 35556788999999999999998 5777765
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.09 E-value=4.2e-06 Score=87.28 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
......+||+|+.+.+|.+++...|+.||.|..|.|+.+...|.++|||||+|.+.+.++.|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456689999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred cCCC
Q 002920 273 AVPK 276 (865)
Q Consensus 273 a~~k 276 (865)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7543
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.05 E-value=5.6e-06 Score=92.86 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
...|||+|||++++.++|.++|..||.|....|......+...+||||+|.+.+++..||.+ +-..|+++.|.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999988876543355559999999999999999996 78888999999987554
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.98 E-value=1.2e-05 Score=91.80 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccC---CCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT---DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
.+..++|||+||++.++++.|...|..||+|.+|+|+..+ +..+.+-||||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999987644 2234677999999999999999999999999999999
Q ss_pred EEecCCC
Q 002920 270 VDWAVPK 276 (865)
Q Consensus 270 V~~a~~k 276 (865)
+-|+.+-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.92 E-value=9.8e-07 Score=94.89 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=123.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce-eCCeeEEEEecCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIAVDWAVP 275 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~-i~gr~l~V~~a~~ 275 (865)
..+|++||.+.++..+|..+|...-.-.+-.++. -.||+||.+.+...|.+|++.|+|.. +.|.++.|.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998741111111111 35899999999999999999999874 7899999988766
Q ss_pred CCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002920 276 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 355 (865)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~ 355 (865)
+..+
T Consensus 76 kkqr---------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 76 KKQR---------------------------------------------------------------------------- 79 (584)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5421
Q ss_pred cchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 002920 356 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 435 (865)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv 435 (865)
++.+-|+|+|+..-++-|..+...||.|..|
T Consensus 80 -------------------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 80 -------------------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred -------------------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 2468899999999999999999999999999
Q ss_pred EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 436 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 436 ~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
..+.- ..-.-..-|+|.+.+.+..||..++ |..|....+.|.|-...
T Consensus 111 eqvnt---~~etavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 111 EQVNT---DSETAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhcc---chHHHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccCchh
Confidence 65422 1123344588999999999999999 99999999999996543
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.90 E-value=3.1e-05 Score=66.00 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=47.7
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 406 NTIFICNLPFDLDNEE----VKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 406 ~tLfV~NLP~~vteed----L~e~Fs~fG-~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
+.|||.|||.+.+... |+.++..+| .|.+| +.+.|+|.|.+.+.|.+|.+.|+ |-.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRME-----GEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhc-----ccccccc
Confidence 4799999999998655 555666775 56665 25789999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 002920 481 QLTVLKALD 489 (865)
Q Consensus 481 ~L~V~~A~~ 489 (865)
+|.|.|...
T Consensus 68 kI~v~~~~~ 76 (90)
T PF11608_consen 68 KISVSFSPK 76 (90)
T ss_dssp --EEESS--
T ss_pred eEEEEEcCC
Confidence 999999743
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.87 E-value=1.8e-05 Score=82.62 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
....+||+|+.+.+|.+++..+|+.||.|..+.|+.+...+.++||+||+|.+.+.+..|+. |+ |..|.|+.+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-----gs~i~~~~i~ 173 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-----GSEIPGPAIE 173 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-----Ccccccccce
Confidence 34689999999999999999999999999999999999888999999999999999999998 99 9999999999
Q ss_pred EEEccC
Q 002920 484 VLKALD 489 (865)
Q Consensus 484 V~~A~~ 489 (865)
|.+..-
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 998653
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.81 E-value=2.2e-06 Score=92.33 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=120.4
Q ss_pred EEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC-ccCCeE
Q 002920 103 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIKGGT 181 (865)
Q Consensus 103 tVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~-~i~G~~ 181 (865)
.+|++||.+.++..+|..+|... .++..+.. =...|||||.+.+...|.+|++.++|+ .+.|..
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~f---------l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQF---------LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCcce---------eeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 58999999999999999999876 33322210 113589999999999999999999986 478888
Q ss_pred EEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEc-ccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 182 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP-HNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 182 i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~-~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
+.+...-. ....++.+-|+|+|+...++.|..++..||.+..|... .+++ .-..-|+|...+.+..||..|+|
T Consensus 68 ~e~~~sv~--kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 68 QEVEHSVP--KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred eeccchhh--HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 87755432 23445679999999999999999999999999988653 3332 23455788999999999999999
Q ss_pred ceeCCeeEEEEecC
Q 002920 261 QKFGKRPIAVDWAV 274 (865)
Q Consensus 261 ~~i~gr~l~V~~a~ 274 (865)
..+....+.|.|..
T Consensus 142 ~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 142 PQLENQHLKVGYIP 155 (584)
T ss_pred hHhhhhhhhcccCc
Confidence 99999999988863
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=2.3e-05 Score=88.18 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=63.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
+...++|+|-|||..|++++|+.+|+.||.|..|+. +-..+|..||+|-+.-+|++|+++|+ +..|.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~-----~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALN-----RREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHH-----HHHhhhhh
Confidence 455789999999999999999999999999999653 44468999999999999999999999 78887777
Q ss_pred EE
Q 002920 482 LT 483 (865)
Q Consensus 482 L~ 483 (865)
|.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 66
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=6.8e-05 Score=68.66 Aligned_cols=78 Identities=27% Similarity=0.321 Sum_probs=49.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
|+.|+|.+++..++.++|+++|+.||.|.+|.+... -..|||.|.+++.|+.|+..+....+.++.|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 468999999999999999999999999999876532 35799999999999999998874434467788877777
Q ss_pred EEcc
Q 002920 485 LKAL 488 (865)
Q Consensus 485 ~~A~ 488 (865)
..-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 6643
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.67 E-value=0.00022 Score=60.90 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=46.4
Q ss_pred CeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 558 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 558 ~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
+.|+|.|||...+...++.-.......| -|.|..| +.|.|+|.|.+++.|.+|...|+|-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNC----GGkVl~v----------------~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNC----GGKVLSV----------------SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTT----T--EEE------------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhcc----CCEEEEE----------------eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 4699999999888655544433322222 4667665 3588999999999999999999997
Q ss_pred CCCCCCCCceEEEEecc
Q 002920 638 PKTFGPEHRPIVEFAVD 654 (865)
Q Consensus 638 p~~fg~~~rliV~fA~e 654 (865)
.+|| +++.|+|...
T Consensus 63 -dVfG--~kI~v~~~~~ 76 (90)
T PF11608_consen 63 -DVFG--NKISVSFSPK 76 (90)
T ss_dssp --SSS--S--EEESS--
T ss_pred -cccc--ceEEEEEcCC
Confidence 6888 7999999953
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.19 E-value=0.00029 Score=75.76 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCe
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 475 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s--------v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~ 475 (865)
...+|||-+||..++.++|.++|.++|.|.. |.|-++++|+.++|-|.|.|.++..|+.|+.-++ +.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gk 139 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GK 139 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----cc
Confidence 3468999999999999999999999998754 6677888899999999999999999999999999 99
Q ss_pred EecCeEEEEEEccCch
Q 002920 476 FLKGRQLTVLKALDKK 491 (865)
Q Consensus 476 ~l~Gr~L~V~~A~~k~ 491 (865)
.|.|.+|.|.+|..+.
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999987654
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.11 E-value=0.00036 Score=75.02 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceE--------EEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 264 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~ 264 (865)
.....+|||-+||..+++++|.++|.+||.|. .|.|.++.+|+..+|-|.|.|.+...|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567899999999999999999999999874 4788899999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCC
Q 002920 265 KRPIAVDWAVPKN 277 (865)
Q Consensus 265 gr~l~V~~a~~k~ 277 (865)
+.+|.|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886554
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.94 E-value=0.0017 Score=59.46 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-----KFGKRPIAVD 271 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~-----~i~gr~l~V~ 271 (865)
..|+|.+++..++.++|+++|+.||.|..|.+... ...|||.|.+++.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999999998888653 235999999999999999876543 4566666555
Q ss_pred e
Q 002920 272 W 272 (865)
Q Consensus 272 ~ 272 (865)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0018 Score=66.60 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=67.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 486 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~ 486 (865)
.|||.||..-+..+.|..-|+.||.|....++.|. .+++.+-++|.|...-.|.+|+..++ ..+.+....+++..|..
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~-~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR-EGGFGGTTGGRPVGVEP 110 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc-cCccccCCCCCccCCCh
Confidence 69999999999999999999999999998777774 68899999999999999999999985 22334556788887776
Q ss_pred cc
Q 002920 487 AL 488 (865)
Q Consensus 487 A~ 488 (865)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 53
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.84 E-value=0.0023 Score=67.65 Aligned_cols=81 Identities=21% Similarity=0.428 Sum_probs=62.9
Q ss_pred CCEEEEcCCCCCCCHHHH------HHHhhccCCeeEEEEeecCCC-CCCCc-e-EEEEeCCHHHHHHHHHHhcCCCCCCe
Q 002920 405 QNTIFICNLPFDLDNEEV------KQRFSAFGEVVSFVPVLHQVT-KRPKG-T-GFLKFKTVEAATAAVSASKTTSGLGI 475 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL------~e~Fs~fG~V~sv~i~~d~~~-g~~kG-~-aFV~F~s~e~A~~Al~~ln~~~~~g~ 475 (865)
..-+||-+||+.+-.+++ .++|.+||.|..|.|-..-.. ....+ + .||+|.+.++|.+||.+.+ |.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs 188 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GS 188 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----cc
Confidence 356899999999877762 579999999998755432211 11122 2 3999999999999999999 99
Q ss_pred EecCeEEEEEEccCc
Q 002920 476 FLKGRQLTVLKALDK 490 (865)
Q Consensus 476 ~l~Gr~L~V~~A~~k 490 (865)
.++||.|...|...+
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 999999999997654
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0028 Score=67.04 Aligned_cols=82 Identities=21% Similarity=0.371 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHhhcCCCceEEEEEcccCCCC-CccceE--EEEECCHHHHHHHHHHhCCceeCC
Q 002920 195 QKWKLIIRNIPFKAKVNEI------KDMFSPVGLVWNVYIPHNTDTG-LSKGFA--FVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L------~~~F~~~G~I~~v~i~~d~~tg-~~kG~a--fV~F~~~e~A~~Al~~lng~~i~g 265 (865)
+..-|||-+||+.+..+++ .++|.+||.|..|.|.+...+. ...+.+ ||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4557899999998876662 4799999999998886643211 122323 999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 002920 266 RPIAVDWAVPK 276 (865)
Q Consensus 266 r~l~V~~a~~k 276 (865)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999886543
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0035 Score=70.70 Aligned_cols=79 Identities=24% Similarity=0.500 Sum_probs=64.8
Q ss_pred CCCcEEEEcCCCCCCC------HHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee-CCe
Q 002920 194 TQKWKLIIRNIPFKAK------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKR 266 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~t------ee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i-~gr 266 (865)
.-...|+|.|+|---. ..-|..+|+.+|.|..+.++.+.++| ++||.|++|.+..+|+.|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4456899999985322 23467899999999999999988755 999999999999999999999999998 566
Q ss_pred eEEEEec
Q 002920 267 PIAVDWA 273 (865)
Q Consensus 267 ~l~V~~a 273 (865)
.+.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6766543
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.76 E-value=0.0035 Score=49.83 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHH
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASV 169 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al 169 (865)
++.|-|.+.|.+..+. +..+|..||+|..+.+. ....++||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---------------CCCcEEEEEECCHHHHHhhC
Confidence 3679999999887765 55689999999999884 12346999999999999985
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.59 E-value=0.0032 Score=66.95 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccC--CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIG--TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 176 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~ 176 (865)
....++|||||-|.+|.++|.+.+...| .+..++++.++ .+|.++|||+|...+..++++-++.|-.+.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---------~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---------TNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---------cCCcccceEEEEecchHHHHHHHHhcccce
Confidence 4456899999999999999999888877 67777776554 389999999999999999999999888888
Q ss_pred cCCeEEEE
Q 002920 177 IKGGTVWA 184 (865)
Q Consensus 177 i~G~~i~v 184 (865)
|.|..-.|
T Consensus 149 iHGQ~P~V 156 (498)
T KOG4849|consen 149 IHGQSPTV 156 (498)
T ss_pred ecCCCCee
Confidence 88764433
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.006 Score=68.87 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE
Q 002920 403 ELQNTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 476 (865)
Q Consensus 403 ~~~~tLfV~NLP~~v------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~ 476 (865)
....+|+|-|+|.-- -..-|..+|+++|.|..+.++.+..+| ++||.|++|.+..+|+.|++.|| |..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~-----G~~ 129 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN-----GKR 129 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc-----cce
Confidence 446799999999532 234567899999999999988887555 99999999999999999999999 888
Q ss_pred ec-CeEEEEEEcc
Q 002920 477 LK-GRQLTVLKAL 488 (865)
Q Consensus 477 l~-Gr~L~V~~A~ 488 (865)
|+ .+.+.|..-.
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 86 6777776643
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.42 E-value=0.0018 Score=66.49 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=60.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC--------CCccc----eEEEEECCHHHHHHHHHHhCCceeC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT--------GLSKG----FAFVKFTCKRDAESAIQKFNGQKFG 264 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t--------g~~kG----~afV~F~~~e~A~~Al~~lng~~i~ 264 (865)
..||+++||+.+...-|+++|+.||.|-.|.+-....+ |.+.+ -|+|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 38999999999999999999999999999988765444 22222 2889999999999999999999998
Q ss_pred Cee
Q 002920 265 KRP 267 (865)
Q Consensus 265 gr~ 267 (865)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 865
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.30 E-value=0.0032 Score=66.95 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCc--eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
..++||+||-|.+|+++|.+.+...|. |.++++..++.+|.++|||+|...+....++-++.|-...|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 348999999999999999999888764 777888888999999999999999999999999999999998877666543
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.25 E-value=0.0039 Score=68.35 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=56.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec---CCCC--C--------CCceEEEEeCCHHHHHHHHHHhc
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH---QVTK--R--------PKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d---~~~g--~--------~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
-++++|.+.|||.+-.-+.|.++|+.||.|.+|+|+.. +.+. . .+-+|||+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46789999999999999999999999999999999766 3322 1 25679999999999999999997
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0085 Score=61.80 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEE
Q 002920 165 ACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 244 (865)
Q Consensus 165 A~~Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~ 244 (865)
|+.|-..|++....|+.+.|+-... ..|||.||+..+.-+.|...|+.||+|....++.|- .++..|-++|.
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~ 78 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVE 78 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhh
Confidence 4555667999999999999976432 489999999999999999999999999887777764 58889999999
Q ss_pred ECCHHHHHHHHHHhCCcee----CCeeEEEEec
Q 002920 245 FTCKRDAESAIQKFNGQKF----GKRPIAVDWA 273 (865)
Q Consensus 245 F~~~e~A~~Al~~lng~~i----~gr~l~V~~a 273 (865)
|...-.|.+|+..++-.-| .+++.-|...
T Consensus 79 ~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 79 FAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 9999999999987643333 4555555443
No 170
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.19 E-value=0.0064 Score=69.06 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=70.5
Q ss_pred hhhhcCCCCCCCccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCC
Q 002920 544 KMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTE 623 (865)
Q Consensus 544 ~~~~l~~p~~~~s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~ 623 (865)
......+|.-+..+++|||.||=--.|.-+|+.|+.. -.|.|... +|- +-+.-|||.|.+
T Consensus 431 ~~~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~r--------tgg~Vee~-WmD-----------kIKShCyV~yss 490 (718)
T KOG2416|consen 431 PKERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGR--------TGGNVEEF-WMD-----------KIKSHCYVSYSS 490 (718)
T ss_pred ccccCCCCCCCCccceEeeecccccchHHHHHHHHhh--------ccCchHHH-HHH-----------HhhcceeEeccc
Confidence 3345566777777899999999666699999999996 36667766 442 236679999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeccc
Q 002920 624 HQHALVALRVLNNNPKTFGPEHRPIVEFAVDN 655 (865)
Q Consensus 624 ~e~A~~Al~~lng~p~~fg~~~rliV~fA~e~ 655 (865)
.++|...+.+|||-.---+..++|++.|+.++
T Consensus 491 ~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 491 VEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred HHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 99999999999995212355588999999654
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.09 E-value=0.013 Score=46.68 Aligned_cols=52 Identities=31% Similarity=0.483 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHH
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 464 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al 464 (865)
+.|-|.+.|.+..+ .|..+|..||.|..+.+. ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 47889999976664 566699999999998764 23668999999999999985
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.01 E-value=0.016 Score=60.55 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=61.0
Q ss_pred CEEEEcCC--CCCCC---HHHHHHHhhccCCeeEEEEeecCCCCCC-CceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 406 NTIFICNL--PFDLD---NEEVKQRFSAFGEVVSFVPVLHQVTKRP-KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 406 ~tLfV~NL--P~~vt---eedL~e~Fs~fG~V~sv~i~~d~~~g~~-kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
..|.++|+ +-.++ ++++.+.+.+||.|..|.|...+..... .--.||+|...++|.+|+-.|| |.+|+|
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-----GRyFGG 356 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-----GRYFGG 356 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-----Cceecc
Confidence 34666666 33443 4688899999999999988776532222 2247999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 002920 480 RQLTVLKAL 488 (865)
Q Consensus 480 r~L~V~~A~ 488 (865)
|.+...|..
T Consensus 357 r~v~A~Fyn 365 (378)
T KOG1996|consen 357 RVVSACFYN 365 (378)
T ss_pred eeeeheecc
Confidence 999998864
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.96 E-value=0.033 Score=50.39 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-------CCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-------VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~-------~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
.+.|.|.+.|.. .-..|.++|+.||.|.+..-+... .......+..|+|+++.+|.+||.. | |..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-N-----G~i~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-N-----GTIF 78 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-T-----TEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-C-----CeEE
Confidence 468999999988 556788999999999886411000 0012456899999999999999954 6 8999
Q ss_pred cCeEE-EEEEc
Q 002920 478 KGRQL-TVLKA 487 (865)
Q Consensus 478 ~Gr~L-~V~~A 487 (865)
.|..| -|.|+
T Consensus 79 ~g~~mvGV~~~ 89 (100)
T PF05172_consen 79 SGSLMVGVKPC 89 (100)
T ss_dssp TTCEEEEEEE-
T ss_pred cCcEEEEEEEc
Confidence 88655 46665
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.93 E-value=0.027 Score=50.92 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCch-hhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKE-ELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~-~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
..+.|.|=+.|...+. .|.+.|+.||+|++..-..... .+... ........-.|+|.+..+|.+||. .||..|.
T Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~Ile~~~~~~~~~~~~~~---~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPSASN-QVLRHFSSFGTILEHFEVLRSSSGINPY---PIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp GCCEEEEE---GGGHH-HHHHHHHCCS-EECEEGGG-------------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CCeEEEEEccCHHHHH-HHHHHHHhcceEEEeecccccccccccc---cCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 4567999999999665 5778999999998876211100 00000 011223478999999999999999 8999999
Q ss_pred CeEEE
Q 002920 179 GGTVW 183 (865)
Q Consensus 179 G~~i~ 183 (865)
|..|-
T Consensus 80 g~~mv 84 (100)
T PF05172_consen 80 GSLMV 84 (100)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 87664
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.91 E-value=0.0085 Score=61.72 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCcc----ceEEEEECCHHHHHHHHHHhcC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM----DASAVLYTTVKSACASVALLHQ 174 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~----G~AfV~F~s~e~A~~Al~~lng 174 (865)
+..--||+++||+.+...-|+++|+.||.|-.|.+.........+.. +.|.+. --|+|+|.+...|......||+
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~-~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARK-RKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHh-hcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 45668999999999999999999999999999988655443221111 223332 2378999999999999999999
Q ss_pred CccCCeE
Q 002920 175 KEIKGGT 181 (865)
Q Consensus 175 ~~i~G~~ 181 (865)
..|.|+.
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999874
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.72 E-value=0.034 Score=47.83 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=43.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
+...+..+|. +|..+...||.++|+.||.|. |..+.|. -|||.....+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3444566666 999999999999999999988 6665542 399999999999999988753
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.32 E-value=0.0076 Score=62.30 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=52.3
Q ss_pred HHHHHHhh-ccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEc
Q 002920 420 EEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 487 (865)
Q Consensus 420 edL~e~Fs-~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A 487 (865)
++|...|+ +||.|..+.|..+. .-.-.|-+||.|...++|++|+..|| +.+|.|++|+..+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeec
Confidence 56666667 99999998655432 33568899999999999999999999 99999999999985
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.08 E-value=0.025 Score=62.23 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=56.6
Q ss_pred ccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCC--------ceEEEEEeCCHHHH
Q 002920 556 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYS--------RGVAFVEFTEHQHA 627 (865)
Q Consensus 556 s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~s--------rG~aFVeF~~~e~A 627 (865)
...+|.+.|||.+-.-+.|.+||. .+|.|..|+|+.-. -..++..+.+ +-+|||+|.+.+.|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg---------~~G~IksIRIckPg-aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFG---------TVGSIKSIRICKPG-AIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhh---------cccceeeeeecCCC-CCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 457899999999988899999999 59999999999751 1111112222 44899999999999
Q ss_pred HHHHHHhcCC
Q 002920 628 LVALRVLNNN 637 (865)
Q Consensus 628 ~~Al~~lng~ 637 (865)
.+|.+.||..
T Consensus 300 ~KA~e~~~~e 309 (484)
T KOG1855|consen 300 RKARELLNPE 309 (484)
T ss_pred HHHHHhhchh
Confidence 9999999764
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.81 E-value=0.059 Score=56.48 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCCceEEEEEcccCCCCC-ccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 210 VNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 210 ee~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
++++.+-+..||.|..|.|...+..-. ..---||+|...++|.+|+-.|||..|+|+.+..+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 567888999999999998877652211 12237999999999999999999999999999988763
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.79 E-value=0.13 Score=49.45 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCC------CCCH---HHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC
Q 002920 195 QKWKLIIRNIPF------KAKV---NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 195 ~~~~l~V~nLp~------~~te---e~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g 265 (865)
+..+|.|.=+.+ ...+ .+|.+.|..||.|.-|++..+ .-+|+|.+.++|-+|+. |+|..++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 444666665541 2222 367788999999887877643 48999999999999998 89999999
Q ss_pred eeEEEEecCCC
Q 002920 266 RPIAVDWAVPK 276 (865)
Q Consensus 266 r~l~V~~a~~k 276 (865)
+.|.|..-.|.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999986554
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.71 E-value=0.034 Score=63.46 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe--
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL-- 477 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs-~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l-- 477 (865)
....++.|+|.||---+|.-+|+.++. ..|.|..+ -+|+ -+..|||.|.+.++|...+.+|| |+.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~Alh-----nV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALH-----NVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHh-----ccccCC
Confidence 445678999999999999999999999 56666665 3343 36789999999999999999999 8776
Q ss_pred -cCeEEEEEEccC
Q 002920 478 -KGRQLTVLKALD 489 (865)
Q Consensus 478 -~Gr~L~V~~A~~ 489 (865)
+++.|.+.|+..
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 578999999754
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.66 E-value=0.015 Score=60.23 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=51.7
Q ss_pred HHHHHhhc-CCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 211 NEIKDMFS-PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 211 e~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
++|...|+ .||.|.++.|-.+. .-.-.|-+||.|...++|++|+..||+..|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 79999988775543 23468899999999999999999999999999999999874
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.35 E-value=0.19 Score=48.38 Aligned_cols=73 Identities=26% Similarity=0.314 Sum_probs=51.3
Q ss_pred CCCCEEEEcCCC-----CCCCH----HHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 403 ELQNTIFICNLP-----FDLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 473 (865)
Q Consensus 403 ~~~~tLfV~NLP-----~~vte----edL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~ 473 (865)
++..||.|.=+. ....+ .+|.+.|..||.|.-++++- +.-+|+|.+-++|-+|+ .|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~d----- 90 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLD----- 90 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGC-----
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccC-----
Confidence 344567665444 11222 47888999999988887752 35799999999999998 678
Q ss_pred CeEecCeEEEEEEccC
Q 002920 474 GIFLKGRQLTVLKALD 489 (865)
Q Consensus 474 g~~l~Gr~L~V~~A~~ 489 (865)
|..++|+.|.|.+-.+
T Consensus 91 g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CSEETTEEEEEEE---
T ss_pred CcEECCEEEEEEeCCc
Confidence 9999999999998544
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.10 E-value=0.12 Score=51.92 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcC-CCce---EEEE--EcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC---C
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSP-VGLV---WNVY--IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG---K 265 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~-~G~I---~~v~--i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~---g 265 (865)
....|.|++||+.+|++++++.++. ++.. ..+. +.........-.-|||.|.+.+++......++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999998887 6665 2232 1111111112345999999999999999999998882 2
Q ss_pred --eeEEEEecCC
Q 002920 266 --RPIAVDWAVP 275 (865)
Q Consensus 266 --r~l~V~~a~~ 275 (865)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3556777754
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.77 E-value=0.3 Score=42.17 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
...+|. +|.+|-..||.++|++||.|.- ..+- -..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~-------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIN-------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEE-EEEC-------TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEc-------CCcEEEEeecHHHHHHHHHHhc
Confidence 456665 9999999999999999998743 3432 3479999999999999998887
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.29 E-value=0.26 Score=46.69 Aligned_cols=73 Identities=26% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 403 ELQNTIFICNLPFDL----DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 403 ~~~~tLfV~NLP~~v----teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
++-.+|.|+=|..++ +-..|...++.||+|.+|.+. .+..|.|.|.+..+|-+|+.++. ...-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~------s~~p 150 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQ------SRAP 150 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhc------CCCC
Confidence 344678886555444 445667778999999998653 35689999999999999999997 3566
Q ss_pred CeEEEEEEcc
Q 002920 479 GRQLTVLKAL 488 (865)
Q Consensus 479 Gr~L~V~~A~ 488 (865)
|..+.+.|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 8888888854
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.43 E-value=0.4 Score=39.26 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCC----CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
...|+|+|+. +++.++|+.+|..| ++ ..|.++-|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3479999984 58899999999998 54 457777664 2999999999999999764
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.98 E-value=0.067 Score=57.67 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeecCC--CC-CCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 406 NTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQV--TK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~---e~Fs~fG~V~sv~i~~d~~--~g-~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
.-+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+ |+.++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 468888898887666554 5899999999987766552 11 122238999999999999999999 999999
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
+.|...+...+-
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 999988877653
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.66 E-value=0.97 Score=42.97 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=55.1
Q ss_pred ccCeEEEeCCCccCC-HHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 002920 556 SRTRLVIYNLPKSMT-EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 634 (865)
Q Consensus 556 s~~~L~V~NLP~~vt-ee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~l 634 (865)
+..+|.|+=|...+. .++|+.+.... . .||.|.+|.+. ++-.|.|.|.+..+|-.|+.++
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~L-----s-~fGpI~SVT~c-------------GrqsavVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRL-----S-VFGPIQSVTLC-------------GRQSAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHH-----H-hcCCcceeeec-------------CCceEEEEehhhHHHHHHHHhh
Confidence 467888887766653 45565554421 1 49999999776 3778999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEe
Q 002920 635 NNNPKTFGPEHRPIVEFA 652 (865)
Q Consensus 635 ng~p~~fg~~~rliV~fA 652 (865)
+.+ ..| ..+.+.|-
T Consensus 146 ~s~--~pg--tm~qCsWq 159 (166)
T PF15023_consen 146 QSR--APG--TMFQCSWQ 159 (166)
T ss_pred cCC--CCC--ceEEeecc
Confidence 986 334 56667775
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.84 E-value=0.32 Score=49.02 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEeecC-CCCC-CCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSA-FGEV---VSFVPVLHQ-VTKR-PKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~-fG~V---~sv~i~~d~-~~g~-~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
.+..|.|++||+++|++++.+.++. ++.. .++.-.... .... ...-|||.|.+.+++...+..++ |+.|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-----g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-----GHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-----TEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-----CcEE
Confidence 3468999999999999999998887 6665 333311221 1121 23469999999999999999999 8766
Q ss_pred cC-----eEEEEEEccC
Q 002920 478 KG-----RQLTVLKALD 489 (865)
Q Consensus 478 ~G-----r~L~V~~A~~ 489 (865)
-+ .+..|.+|.-
T Consensus 81 ~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp E-TTS-EEEEEEEE-SS
T ss_pred ECCCCCCcceeEEEcch
Confidence 32 3556677654
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.24 E-value=0.14 Score=55.27 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HhhcCCCceEEEEEcccCC--CCC-ccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 195 QKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTD--TGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~---~~F~~~G~I~~v~i~~d~~--tg~-~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
...-+||-+|+..+..+.+. +.|.+||.|..|.+..++. .+. ...-+||+|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888888876555443 5899999999999988762 111 11238999999999999999999999999998
Q ss_pred EEEecCCC
Q 002920 269 AVDWAVPK 276 (865)
Q Consensus 269 ~V~~a~~k 276 (865)
...+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 87776554
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.97 E-value=1.3 Score=36.29 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHh
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAF----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 467 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~f----G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~l 467 (865)
..|+|+|++ +++.++|+.+|..| + ...|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999996 58889999999999 4 3455555442 4789999999999999865
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=1.3 Score=47.07 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
..=|-|-++|+....- |..+|..||+|++.... .+-.+-+|.|.+.-+|.+||. .||+.|.|.
T Consensus 197 D~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~---------------~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTP---------------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchhH-HHHHHHhhCeeeeeecC---------------CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 3456777888776654 56799999999987663 223368999999999999999 899988876
Q ss_pred EE
Q 002920 181 TV 182 (865)
Q Consensus 181 ~i 182 (865)
.+
T Consensus 260 vm 261 (350)
T KOG4285|consen 260 VM 261 (350)
T ss_pred eE
Confidence 55
No 194
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.82 E-value=13 Score=39.85 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=116.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC-------CCCCCceEEEEeCCHHHHHHHH----HHhcC
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-------TKRPKGTGFLKFKTVEAATAAV----SASKT 469 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~-------~g~~kG~aFV~F~s~e~A~~Al----~~ln~ 469 (865)
+....|.|...|+..+++-..+...|-.||+|.+|.++.+.. .........+.|-+.+.+.... ..|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344578999999999999999999999999999999987651 1234567889999988765433 23321
Q ss_pred CCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcC
Q 002920 470 TSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ 549 (865)
Q Consensus 470 ~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~ 549 (865)
. ...+....|.|.|..-+-..+... +....|...++... + .. .+-
T Consensus 91 f---K~~L~S~~L~lsFV~l~y~~~~~~-----~~~~~~~~~~~~~~-----------------------L---~~-~i~ 135 (309)
T PF10567_consen 91 F---KTKLKSESLTLSFVSLNYQKKTDP-----NDEEADFSDYLVAS-----------------------L---QY-NII 135 (309)
T ss_pred H---HHhcCCcceeEEEEEEeccccccc-----cccccchhhHHhhh-----------------------h---hh-eee
Confidence 1 245677888888864221110000 00011111111000 0 00 001
Q ss_pred CCCCCCccCeEEEeCCCccCCHHH-HHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHH
Q 002920 550 SPNFHVSRTRLVIYNLPKSMTEKG-LKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHAL 628 (865)
Q Consensus 550 ~p~~~~s~~~L~V~NLP~~vtee~-L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~ 628 (865)
++. ..+.|.|. +...+..++ +.+.+ .+......+ -=.|.+|.|+--... .+.-+..||.+.|-+.-.|.
T Consensus 136 ~~g---ATRSl~Ie-F~~~~~~~dl~~~kL-~fL~~~~n~-RYVlEsIDlVna~~~----~~~Fp~~YaILtFlnIsMAi 205 (309)
T PF10567_consen 136 NRG---ATRSLAIE-FKDPVDKDDLIEKKL-PFLKNSNNK-RYVLESIDLVNADEP----SKHFPKNYAILTFLNISMAI 205 (309)
T ss_pred cCC---cceEEEEE-ecCccchhHHHHHhh-hhhccCCCc-eEEEEEEEEeccCcc----cccCCcceEEEeehhHHhHH
Confidence 111 12346665 334453333 33333 222111111 124677888743221 23346789999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEec
Q 002920 629 VALRVLNNNPKTFGPEHRPIVEFAV 653 (865)
Q Consensus 629 ~Al~~lng~p~~fg~~~rliV~fA~ 653 (865)
..+..|..+....|..+-..|..+.
T Consensus 206 EV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 206 EVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred HHHHHHHhcccccCcceEEEEeccC
Confidence 9999998543345544444466663
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.42 E-value=1.8 Score=49.65 Aligned_cols=90 Identities=19% Similarity=0.320 Sum_probs=63.6
Q ss_pred HHHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcC--CCceEEEEEcccCCCCCccceEEEE
Q 002920 167 ASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFVK 244 (865)
Q Consensus 167 ~Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~ 244 (865)
.+|...-+..+..+-..|++ ....+.|+++-||..+-.|+|+.||.. |-.+.+|.+-.+. + =||+
T Consensus 152 Evlresp~VqvDekgekVrp------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--n-----WyIT 218 (684)
T KOG2591|consen 152 EVLRESPNVQVDEKGEKVRP------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--N-----WYIT 218 (684)
T ss_pred HHHhcCCCceeccCcccccc------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--c-----eEEE
Confidence 33444444555544444443 344567889999999999999999986 7778888886542 1 6999
Q ss_pred ECCHHHHHHHHHHhCC--ceeCCeeEE
Q 002920 245 FTCKRDAESAIQKFNG--QKFGKRPIA 269 (865)
Q Consensus 245 F~~~e~A~~Al~~lng--~~i~gr~l~ 269 (865)
|.+..||+.|.+.|.. ..|.|++|.
T Consensus 219 fesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcchh
Confidence 9999999999987643 345666554
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.21 E-value=1.1 Score=51.17 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhc--cCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcC--Cc
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGS--IGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ--KE 176 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~--~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng--~~ 176 (865)
.+-|+|+-||..+-+++++.||+. |-.+.+|.+..+. + -||+|++..+|+.|...|.- +.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----------n-----WyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----------N-----WYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----------c-----eEEEeecchhHHHHHHHHHHHHHh
Confidence 345788999999999999999995 7789999985442 1 69999999999999998743 56
Q ss_pred cCCeEEEEec
Q 002920 177 IKGGTVWARQ 186 (865)
Q Consensus 177 i~G~~i~v~~ 186 (865)
|.|++|.+|-
T Consensus 239 fqgKpImARI 248 (684)
T KOG2591|consen 239 FQGKPIMARI 248 (684)
T ss_pred hcCcchhhhh
Confidence 7888886653
No 197
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=4.2 Score=47.08 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCCccc-HHHHHHHhhcc----CCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHh
Q 002920 98 QRVARTVIIGGLLNADM-AEEVHRLAGSI----GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL 172 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~t-e~~L~~~F~~~----G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~l 172 (865)
....++|-|-||.|+-. ..+|.-+|+.| |.|++|.|-.. .-|+ ..|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS----------eFGk-------------------eRM 221 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS----------EFGK-------------------ERM 221 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh----------hhhH-------------------HHh
Confidence 46789999999999865 77899998876 58999998322 1222 234
Q ss_pred cCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHH
Q 002920 173 HQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 252 (865)
Q Consensus 173 ng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~ 252 (865)
.-..+.|-++-+-.......... .....-++..+..+.+|+. ..++ -=||.|+|.+.+.|.
T Consensus 222 ~eEeV~GP~~el~~~~e~~~~s~--------sD~ee~~~~~~~kLR~Yq~-~rLk----------YYyAVvecDsi~tA~ 282 (650)
T KOG2318|consen 222 KEEEVHGPPKELFKPVEEYKESE--------SDDEEEEDVDREKLRQYQL-NRLK----------YYYAVVECDSIETAK 282 (650)
T ss_pred hhhcccCChhhhccccccCcccc--------cchhhhhhHHHHHHHHHHh-hhhe----------eEEEEEEecCchHHH
Confidence 44455555443322211111000 1111111223344444431 1111 127999999999999
Q ss_pred HHHHHhCCceeC--CeeEEEEec
Q 002920 253 SAIQKFNGQKFG--KRPIAVDWA 273 (865)
Q Consensus 253 ~Al~~lng~~i~--gr~l~V~~a 273 (865)
.....++|..|. +..|-+.|.
T Consensus 283 ~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 283 AVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHhcCcceeccccceeeeeec
Confidence 999999999995 455555553
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.56 E-value=0.67 Score=52.09 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=58.7
Q ss_pred cEEEEcCCCCCC-CHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 197 WKLIIRNIPFKA-KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 197 ~~l~V~nLp~~~-tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
+.|-+.-.|+.+ |-++|...|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|.++.|.|.|..+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 334444445554 56889999999999999988553 2349999999999988876 599999999999999877
Q ss_pred CC
Q 002920 276 KN 277 (865)
Q Consensus 276 k~ 277 (865)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.83 E-value=2.7 Score=42.61 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred CHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC--CceeCCeeEEEEecCCC
Q 002920 209 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 209 tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln--g~~i~gr~l~V~~a~~k 276 (865)
..+.|+.+|..|+.+..+.++.. -+-..|.|.+.+.|..|...|+ +..+.|..|+|.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999999888777652 3458999999999999999999 99999999999998543
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.54 E-value=7.9 Score=35.79 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=47.5
Q ss_pred CEEEEcCCC-CCCCHHHHHHHhhccC-CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 406 NTIFICNLP-FDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 406 ~tLfV~NLP-~~vteedL~e~Fs~fG-~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
++|.|--.| .-++.++|..+.+.+- .|..++|+++. ..++-.++++|.+.++|......+| |..|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN-----Gk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN-----GKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC-----CCccC
Confidence 445444444 4455566766666654 46678888764 2356789999999999999999999 88775
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.29 E-value=0.86 Score=51.26 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 404 LQNTIFICNLPFDL-DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 404 ~~~tLfV~NLP~~v-teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+.|-+.-.|+.. |-++|..+|.+||.|..|.|-. +.-.|.|+|.+..+|-.|.. .+ +..|+||.|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~-----~avlnnr~i 438 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SH-----GAVLNNRFI 438 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cc-----cceecCcee
Confidence 34567777777776 5789999999999999996633 24568999999999977764 34 799999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.|-.+.
T Consensus 439 Kl~whnps 446 (526)
T KOG2135|consen 439 KLFWHNPS 446 (526)
T ss_pred EEEEecCC
Confidence 99997653
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.06 E-value=8.2 Score=35.70 Aligned_cols=67 Identities=4% Similarity=-0.091 Sum_probs=48.6
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccC-CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIG-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...+.+...|+-++.++|..+...+- .|..++|+++. ..++--+.+.|.+.++|..-...+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----------~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----------TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----------CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44555555556666667766666554 67788886652 235567899999999999999999999876
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.78 E-value=3.3 Score=44.18 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=56.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCee-EEEEecC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-IAVDWAV 274 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~-l~V~~a~ 274 (865)
..-|-|-++|+.. -..|..+|+.||.|+...... .-.+-+|.|.+.-+|.+||.. ||+.|.|.. |=|..+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 4557777887754 367888999999999776542 335799999999999999995 999997754 4566655
Q ss_pred CCC
Q 002920 275 PKN 277 (865)
Q Consensus 275 ~k~ 277 (865)
.+.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 443
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.14 E-value=1.3 Score=51.89 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=61.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
-++..++||+|+-..+..+-++.+...+|.|.++..+. |||+.|..+..+.+|+..++ -..++|..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t-----~~~~~~~k 102 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT-----ELNIDDQK 102 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc-----ccCCCcch
Confidence 33456999999999999999999999999999986542 99999999999999999998 77888888
Q ss_pred EEEEE
Q 002920 482 LTVLK 486 (865)
Q Consensus 482 L~V~~ 486 (865)
|.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 87765
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.16 E-value=1.3 Score=53.10 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee--CCeeEEEEecCC
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVP 275 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i--~gr~l~V~~a~~ 275 (865)
+.++-|.+-..+-.-|..+|+.||.|.+++.+++- ..|.|.|.+.+.|..|+.+|+|..+ -|-+.+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34445556677888999999999999999988764 3599999999999999999999986 788999999988
Q ss_pred CCccCCC
Q 002920 276 KNIYSSG 282 (865)
Q Consensus 276 k~~~~~~ 282 (865)
-..+...
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 7776654
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=78.88 E-value=1.4 Score=51.57 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
...+..+|||+|+.+.+..+-++.+...||.|.++.... |||..|....-+..|+..|+-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345677999999999999999999999999988765533 89999999999999999988888888877665
Q ss_pred e
Q 002920 272 W 272 (865)
Q Consensus 272 ~ 272 (865)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.32 E-value=5.2 Score=45.07 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG-~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
+++.|+|-.+|..+|-.||..|+..|- .|..++|++|.. ..+-.++|+|.+.++|......+| |..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN-----Gk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN-----GKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC-----CCcCC
Confidence 378999999999999999999998764 578899998642 245579999999999999999999 88775
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.64 E-value=8.1 Score=32.21 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 416 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 416 ~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++-++++..+..|+- .+|..|. + || ||.|.+..+|.+|....+ |..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~-----~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAED-----GTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcC-----CCEEEEEEEEe
Confidence 4678899999999974 2444453 3 33 899999999999999999 88888777654
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=76.53 E-value=6.6 Score=39.81 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=44.5
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccC
Q 002920 418 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 489 (865)
Q Consensus 418 teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~ 489 (865)
..+.|+++|..|+.+..+.++. +-+-..|.|.+.++|.+|...|+.. +..+.|..|.|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~---~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWD---GTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhccc---ccccCCCceEEEEccc
Confidence 3478999999999998886653 3456899999999999999998722 6789999999999843
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.42 E-value=5 Score=35.45 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=43.5
Q ss_pred EEEEECCHHHHHHHHHHh-cCCccCCeEEEEe--ccCCC-------CCCCCCcEEEEcCCCCCCCHHHHHHhhc
Q 002920 155 SAVLYTTVKSACASVALL-HQKEIKGGTVWAR--QLGGE-------GSKTQKWKLIIRNIPFKAKVNEIKDMFS 218 (865)
Q Consensus 155 AfV~F~s~e~A~~Al~~l-ng~~i~G~~i~v~--~~~~~-------~~~~~~~~l~V~nLp~~~tee~L~~~F~ 218 (865)
|+|+|...+-|+..+..- +-..+.+..+.+. +.... ......++|.|.|||..+++++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988732 2223445544432 22111 1234677999999999999999997654
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.55 E-value=14 Score=42.89 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=62.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeecC----------CCCC---------------------
Q 002920 402 DELQNTIFICNLPFD-LDNEEVKQRFSAF----GEVVSFVPVLHQ----------VTKR--------------------- 445 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~-vteedL~e~Fs~f----G~V~sv~i~~d~----------~~g~--------------------- 445 (865)
....++|=|.||.|+ +...+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445689999999987 5789999999866 589999875432 0121
Q ss_pred ----------------CCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec--CeEEEEEEcc
Q 002920 446 ----------------PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--GRQLTVLKAL 488 (865)
Q Consensus 446 ----------------~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~--Gr~L~V~~A~ 488 (865)
..-||.|+|.+.+.|......|+ |+.|. |..|.+.|-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-----G~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-----GIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-----cceeccccceeeeeecC
Confidence 12479999999999999999999 99996 5666666643
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.37 E-value=17 Score=30.90 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=35.6
Q ss_pred CCCCHHHHHHhhcCCCc-----eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 206 FKAKVNEIKDMFSPVGL-----VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 206 ~~~tee~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
..++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888877543 55677743 3789987755 788899999999999999999864
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.67 E-value=13 Score=41.96 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=56.9
Q ss_pred ccCeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhc
Q 002920 556 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 635 (865)
Q Consensus 556 s~~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~ln 635 (865)
+.+.|+|-.+|..+|--+|..++..+ ...|..++|+||.- ..+=.++|.|.+.++|..-...+|
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~--------~~~I~~irivRd~~--------pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASF--------IKQISDIRIVRDGM--------PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHH--------hhhhheeEEeecCC--------CceEEEEEEeccchhHHHHHHHcC
Confidence 36789999999999999999998853 56799999999642 356688999999999999999999
Q ss_pred CC
Q 002920 636 NN 637 (865)
Q Consensus 636 g~ 637 (865)
|.
T Consensus 137 Gk 138 (493)
T KOG0804|consen 137 GK 138 (493)
T ss_pred CC
Confidence 97
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=70.06 E-value=3.9 Score=49.33 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=58.6
Q ss_pred eEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCC
Q 002920 559 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 638 (865)
Q Consensus 559 ~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p 638 (865)
..++.|.+-..+-.-|..+|.+ ||.|.+.+.+|+ -..|.|+|.+.+.|..|+.+|+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~---------yg~v~s~wtlr~------------~N~alvs~~s~~sai~a~dAl~gke 358 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSD---------YGSVASAWTLRD------------LNMALVSFSSVESAILALDALQGKE 358 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHh---------hcchhhheeccc------------ccchhhhhHHHHHHHHhhhhhcCCc
Confidence 3455566667788899999994 999999999876 4579999999999999999999984
Q ss_pred CCCCCCCceEEEEec
Q 002920 639 KTFGPEHRPIVEFAV 653 (865)
Q Consensus 639 ~~fg~~~rliV~fA~ 653 (865)
++-.+-.-.|.||.
T Consensus 359 -vs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 359 -VSVTGAPSRVSFAK 372 (1007)
T ss_pred -ccccCCceeEEecc
Confidence 55544444499984
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.14 E-value=6 Score=38.39 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=55.3
Q ss_pred cceEEEEECCHHHHHHHHHHhcCCccCCeEEEEeccCCCCCC------CCCcEEEEcCCCCC-CCHHHHHHhhcCCCceE
Q 002920 152 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK------TQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVW 224 (865)
Q Consensus 152 ~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~~~~~~~~------~~~~~l~V~nLp~~-~tee~L~~~F~~~G~I~ 224 (865)
.++..+.|.+.+++.+++. .....+.|..+.+..-.+.... ...--|.|.|||.. .+++-|+.+.+.+|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 3679999999999999877 4555567766665544321111 12223667799987 68888999999999998
Q ss_pred EEEEcc
Q 002920 225 NVYIPH 230 (865)
Q Consensus 225 ~v~i~~ 230 (865)
.+....
T Consensus 134 ~vD~~t 139 (153)
T PF14111_consen 134 EVDENT 139 (153)
T ss_pred EEEcCC
Confidence 887643
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.15 E-value=25 Score=29.32 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=43.6
Q ss_pred CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 207 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 207 ~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.++-++|+..+..|+-.. |..++ + | =||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467899999999997543 33332 3 4 499999999999999999999988777654
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.35 E-value=4.1 Score=42.67 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCc------------ccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCcc-----ce--------
Q 002920 100 VARTVIIGGLLNA------------DMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM-----DA-------- 154 (865)
Q Consensus 100 ~~rtVfV~nLp~~------------~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~-----G~-------- 154 (865)
..-||++.+||-. -+++-|+..|..||.|..|.||+-.. + .-..+|+.. ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdp-l---r~~mn~kisgiq~~gfg~g~dlff 223 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDP-L---REEMNGKISGIQFHGFGFGGDLFF 223 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccch-h---HHHhcCccccceeeccccCcchhH
Confidence 3458999999832 24678999999999999999876432 1 111233332 22
Q ss_pred -EEEEECCHHHHHHHHHHhcCCcc
Q 002920 155 -SAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 155 -AfV~F~s~e~A~~Al~~lng~~i 177 (865)
|||+|..-.....|+..|.|..+
T Consensus 224 eayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 224 EAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHHhHHHHHHHHhcchH
Confidence 45666666666667777777654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=56.48 E-value=40 Score=28.55 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEc
Q 002920 415 FDLDNEEVKQRFSAFGE-----VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 487 (865)
Q Consensus 415 ~~vteedL~e~Fs~fG~-----V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A 487 (865)
..++..+|..++...+. |-.|.|. ..|+||+-.. +.|..++..|+ +..+.|++|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~-----~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALN-----GKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHT-----T--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhc-----CCCCCCeeEEEEEC
Confidence 46788899999887654 4455553 3588999875 57899999999 99999999999875
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.58 E-value=21 Score=31.64 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFS 427 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs 427 (865)
..++|.|.|||...++++|++.+.
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 457999999999999999998764
No 220
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=53.02 E-value=34 Score=31.46 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCc--cCCeEEEEec
Q 002920 109 LLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE--IKGGTVWARQ 186 (865)
Q Consensus 109 Lp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~--i~G~~i~v~~ 186 (865)
||+-+.. |-++|..-|.|.+|..... |.+ ..|+-.++|.. +.|. ||+..
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItvtq----------------------ypd----ndal~~~~G~lE~vDg~-i~IGs 61 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITVTQ----------------------YPD----NDALLYVHGTLEQVDGN-IRIGS 61 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEEec----------------------cCC----chhhheeeeehhhccCc-EEEcc
Confidence 5655543 8899999999999865321 111 12233355542 3444 66532
Q ss_pred cCCCCCCCCCcEEEEcC---------CCCCCCHHHHHHhhcC---CCceEEEEEcccCCCCCccceEEEEECCH
Q 002920 187 LGGEGSKTQKWKLIIRN---------IPFKAKVNEIKDMFSP---VGLVWNVYIPHNTDTGLSKGFAFVKFTCK 248 (865)
Q Consensus 187 ~~~~~~~~~~~~l~V~n---------Lp~~~tee~L~~~F~~---~G~I~~v~i~~d~~tg~~kG~afV~F~~~ 248 (865)
.. ....|+|.+ -|+.+|..+|+++|.. |-.|..-.+.+|.--.-+-..||.-|...
T Consensus 62 ~q------~~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 62 GQ------TPASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CC------CcccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 21 222333332 3678999999999986 44455445555422112345688887654
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=42.82 E-value=52 Score=35.05 Aligned_cols=50 Identities=6% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCC-eEEEEeeCCchhhhhcccccCCCccceEEEEECCHH
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGT-VCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 163 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e 163 (865)
....-|+|+|||.++-..+|+..+.+.|. -.++.+ ..++|-||+.|-+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---------------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---------------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee---------------ecCCcceeEecCCcc
Confidence 34456999999999999999999988773 355544 234567999998754
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=38.27 E-value=38 Score=32.68 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.2
Q ss_pred CEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEE
Q 002920 406 NTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVP 437 (865)
Q Consensus 406 ~tLfV~NLP~~-vteedL~e~Fs~fG~V~sv~i 437 (865)
.-|.|.|||.. ++++-|..+.+.+|.+..+..
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 36888999988 578889999999999988754
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.81 E-value=30 Score=34.57 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=54.1
Q ss_pred CEEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 406 NTIFICNLPFDLDN-----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 406 ~tLfV~NLP~~vte-----edL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
+++++.+++..+-. .....+|.+|.....+.++ ++.+..-|.|.+++.|..|...++ +..|.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~-----~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLH-----STSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhh-----hcccCCC
Confidence 57888888877632 3345566666655544433 245567789999999999999999 8889888
Q ss_pred -EEEEEEccCc
Q 002920 481 -QLTVLKALDK 490 (865)
Q Consensus 481 -~L~V~~A~~k 490 (865)
.+..-+|++.
T Consensus 80 ~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 80 NELKLYFAQPG 90 (193)
T ss_pred ceEEEEEccCC
Confidence 8888888764
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.87 E-value=39 Score=31.60 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=28.9
Q ss_pred EEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHH
Q 002920 407 TIFICNLPFDL---------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEA 459 (865)
Q Consensus 407 tLfV~NLP~~v---------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~ 459 (865)
++.|-|+|.+. +.++|.+.|+.|..+. ++.+.+. ..+.|+++|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 67788886543 5689999999999875 5555554 2468999999976443
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.42 E-value=57 Score=30.48 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=29.5
Q ss_pred EEEEcCCCCcc---------cHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHH-HHHHHHH
Q 002920 103 TVIIGGLLNAD---------MAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK-SACASVA 170 (865)
Q Consensus 103 tVfV~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e-~A~~Al~ 170 (865)
+++|-|+|... ..++|.+.|+.|..+. |+.... ..-+.|++.|.|..-- .-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~-----------~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYG-----------KQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEE-----------TTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcC-----------CCCCcEEEEEEECCChHHHHHHHH
Confidence 57777776554 3478999999998765 444332 2356799999999643 3344544
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=87 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHH
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 257 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ 257 (865)
-.+.|-|.++|.....+||..+|..|+. -..|.++-|. .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4578999999999999999999999875 3446665543 499999999999999973
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.84 E-value=60 Score=32.55 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=52.6
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCe-eEEE
Q 002920 197 WKLIIRNIPFKAK-----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIAV 270 (865)
Q Consensus 197 ~~l~V~nLp~~~t-----ee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr-~l~V 270 (865)
+.+++.+++..+- ......+|.+|-......+++ +.++.-|.|.+++.|..|...+++..|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776542 223445666665555445544 456788999999999999999999999887 7887
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
-++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=1.4e+02 Score=33.42 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=46.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHh
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV-SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 467 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~-sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~l 467 (865)
+......|-|.++|...-.+||...|+.|+.-- .|+.|- ...||-.|.+...|..||..-
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-------dthalaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-------DTHALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-------cceeEEeecchHHHHHHhhcc
Confidence 334567899999999999999999999997532 233332 347999999999999998653
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=25.47 E-value=74 Score=33.71 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=28.4
Q ss_pred CEEEEcCCCCCC------------CHHHHHHHhhccCCeeEEEEeec
Q 002920 406 NTIFICNLPFDL------------DNEEVKQRFSAFGEVVSFVPVLH 440 (865)
Q Consensus 406 ~tLfV~NLP~~v------------teedL~e~Fs~fG~V~sv~i~~d 440 (865)
.||++.+||-.| ++..|+..|..||.|..|.|+..
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 478888888544 56889999999999999887653
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.54 E-value=1.5e+02 Score=33.27 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=27.9
Q ss_pred cCCCCEEEEcCCCCccc-HHHHHHHhhcc----CCeEEEEe
Q 002920 98 QRVARTVIIGGLLNADM-AEEVHRLAGSI----GTVCSVTY 133 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~t-e~~L~~~F~~~----G~V~~v~i 133 (865)
..+...|-|-||.|+-. ..+|..+|+.| |.|..|.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 45678899999999754 67888888865 57777776
No 231
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=17 Score=40.93 Aligned_cols=78 Identities=6% Similarity=-0.174 Sum_probs=61.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
...|+..||...++.++.-+|..||.|..+.+-+....|...-.+||.-.+ ..|..||..+. -..+.|-.++|.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k-----~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQK-----RQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHH-----Hhhhhhhhhhhh
Confidence 467889999999999999999999999888766655556666778888764 45777787776 567788888887
Q ss_pred EccC
Q 002920 486 KALD 489 (865)
Q Consensus 486 ~A~~ 489 (865)
++..
T Consensus 78 ~~~~ 81 (572)
T KOG4365|consen 78 VSPS 81 (572)
T ss_pred cCch
Confidence 7654
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.80 E-value=19 Score=41.71 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
..+.|||+|++++++-++|..+++.+-.+..+.+-....-.....+++|.|.-.-....|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 34679999999999999999999998766666554333223456678999998888888888888877754443
No 233
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.66 E-value=1.1e+02 Score=34.18 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEcccCCC--CCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
....|.|.+||+..++.+|.+-..+|-. +....+.....+ ..-.+.|||.|...++.......++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3457899999999999999988887543 222222211100 12356799999999998888777777665
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.37 E-value=16 Score=42.27 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..|+||++|++++++-.+|..+++.+--+..+.+.....-.....++.|+|.---.-..|+.+|| ++.+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn-----~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN-----GIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh-----hccccccc
Confidence 35899999999999999999999998777776554333233445678899987666777777777 55554433
Done!