Query 002920
Match_columns 865
No_of_seqs 581 out of 3765
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 8E-42 2.8E-46 369.5 31.8 247 99-493 20-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-42 1.1E-46 374.0 28.0 253 96-490 36-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 2.9E-40 9.8E-45 357.3 30.5 243 195-655 21-264 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 6.9E-39 2.4E-43 347.8 24.9 249 193-653 38-289 (292)
5 4f02_A Polyadenylate-binding p 100.0 6E-31 2.1E-35 272.3 20.0 173 193-493 12-184 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 5.5E-30 1.9E-34 252.7 21.6 163 102-274 1-165 (166)
7 1b7f_A Protein (SXL-lethal pro 100.0 4.6E-30 1.6E-34 254.2 21.0 165 195-487 2-168 (168)
8 3md3_A Nuclear and cytoplasmic 100.0 7.9E-30 2.7E-34 251.6 21.4 165 197-488 1-165 (166)
9 1b7f_A Protein (SXL-lethal pro 100.0 6.8E-30 2.3E-34 253.0 20.7 165 100-273 2-168 (168)
10 4f02_A Polyadenylate-binding p 100.0 3.3E-30 1.1E-34 266.7 19.1 168 99-277 13-182 (213)
11 1fxl_A Paraneoplastic encephal 100.0 8.2E-30 2.8E-34 251.8 20.8 164 196-487 2-167 (167)
12 1l3k_A Heterogeneous nuclear r 100.0 8.9E-30 3.1E-34 258.9 21.1 179 191-493 8-186 (196)
13 1fxl_A Paraneoplastic encephal 100.0 1.2E-29 4.2E-34 250.5 20.6 164 101-273 2-167 (167)
14 2cjk_A Nuclear polyadenylated 100.0 2.9E-30 9.8E-35 255.6 13.5 166 99-276 1-166 (167)
15 1l3k_A Heterogeneous nuclear r 100.0 3.2E-29 1.1E-33 254.8 20.8 170 98-278 10-185 (196)
16 2qfj_A FBP-interacting repress 100.0 3.2E-29 1.1E-33 258.8 21.1 171 99-278 26-207 (216)
17 2cjk_A Nuclear polyadenylated 100.0 5.1E-30 1.7E-34 253.8 13.5 165 195-490 2-166 (167)
18 2qfj_A FBP-interacting repress 100.0 3.7E-29 1.3E-33 258.3 19.6 180 195-491 27-206 (216)
19 2g4b_A Splicing factor U2AF 65 100.0 6.4E-29 2.2E-33 247.1 19.1 159 99-273 2-171 (172)
20 3nmr_A Cugbp ELAV-like family 100.0 2.1E-28 7E-33 243.8 19.0 166 195-488 2-175 (175)
21 3nmr_A Cugbp ELAV-like family 100.0 1.7E-28 5.8E-33 244.4 18.0 164 100-273 2-174 (175)
22 2yh0_A Splicing factor U2AF 65 100.0 9.9E-28 3.4E-32 244.2 19.5 163 99-277 2-195 (198)
23 2g4b_A Splicing factor U2AF 65 100.0 1.4E-27 4.7E-32 237.5 18.6 158 195-487 3-171 (172)
24 1fje_B Nucleolin RBD12, protei 100.0 3.6E-28 1.2E-32 242.7 14.2 166 192-490 9-174 (175)
25 2yh0_A Splicing factor U2AF 65 100.0 3.3E-27 1.1E-31 240.3 20.9 182 195-491 3-195 (198)
26 1fje_B Nucleolin RBD12, protei 99.9 7.6E-28 2.6E-32 240.3 14.7 163 98-276 10-174 (175)
27 3tyt_A Heterogeneous nuclear r 99.9 1.4E-26 4.9E-31 237.7 21.1 195 195-487 3-204 (205)
28 3tyt_A Heterogeneous nuclear r 99.9 9.5E-27 3.2E-31 239.1 18.6 158 100-273 3-204 (205)
29 3pgw_A U1-A; protein-RNA compl 99.9 9E-26 3.1E-30 243.3 22.7 240 193-488 6-281 (282)
30 2adc_A Polypyrimidine tract-bi 99.9 9.5E-26 3.3E-30 235.9 21.6 195 193-490 31-228 (229)
31 3pgw_A U1-A; protein-RNA compl 99.9 9.7E-26 3.3E-30 243.1 21.7 160 98-274 6-281 (282)
32 2adc_A Polypyrimidine tract-bi 99.9 1.2E-25 4.1E-30 235.1 21.3 160 98-276 31-228 (229)
33 1qm9_A Polypyrimidine tract-bi 99.9 8.3E-26 2.9E-30 230.4 18.9 192 196-490 3-197 (198)
34 3sde_A Paraspeckle component 1 99.9 7.2E-26 2.5E-30 241.6 19.1 156 99-276 20-179 (261)
35 3sde_A Paraspeckle component 1 99.9 1.3E-25 4.6E-30 239.5 20.2 160 192-491 18-180 (261)
36 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-25 3.7E-30 229.6 16.5 158 100-276 2-197 (198)
37 2kn4_A Immunoglobulin G-bindin 99.8 3.5E-20 1.2E-24 182.0 15.0 129 149-277 10-151 (158)
38 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-19 8E-24 176.1 15.8 82 404-490 69-150 (158)
39 4f25_A Polyadenylate-binding p 99.8 2.8E-19 9.5E-24 166.1 10.5 80 405-491 5-84 (115)
40 2i2y_A Fusion protein consists 99.8 6E-19 2.1E-23 171.7 11.6 123 149-277 10-149 (150)
41 4f25_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 162.1 10.1 102 100-212 4-113 (115)
42 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-18 9.6E-23 154.8 11.3 82 403-489 17-98 (99)
43 2i2y_A Fusion protein consists 99.8 2.1E-18 7E-23 167.9 11.0 77 404-490 72-148 (150)
44 4fxv_A ELAV-like protein 1; RN 99.7 5.3E-18 1.8E-22 153.0 11.1 83 193-275 16-98 (99)
45 3s8s_A Histone-lysine N-methyl 99.7 4.7E-17 1.6E-21 149.7 12.1 85 403-492 4-88 (110)
46 2lxi_A RNA-binding protein 10; 99.7 8.1E-18 2.8E-22 149.3 6.8 82 406-491 2-84 (91)
47 2lkz_A RNA-binding protein 5; 99.7 4.1E-17 1.4E-21 145.8 8.2 83 406-489 10-94 (95)
48 2lxi_A RNA-binding protein 10; 99.7 2.6E-17 8.8E-22 146.1 6.8 83 196-278 1-85 (91)
49 3s8s_A Histone-lysine N-methyl 99.7 1.5E-16 5.2E-21 146.3 12.1 84 194-277 4-87 (110)
50 2lkz_A RNA-binding protein 5; 99.7 8.1E-17 2.8E-21 143.9 9.1 84 192-275 5-94 (95)
51 2lea_A Serine/arginine-rich sp 99.7 3.6E-17 1.2E-21 156.2 7.0 123 154-277 6-128 (135)
52 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.7E-16 5.9E-21 139.1 10.8 82 404-490 5-86 (87)
53 3md1_A Nuclear and cytoplasmic 99.7 2.2E-16 7.6E-21 137.0 11.0 80 406-490 2-81 (83)
54 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.4E-16 8.2E-21 138.1 10.7 83 194-276 4-86 (87)
55 1whw_A Hypothetical protein ri 99.7 6.1E-16 2.1E-20 139.1 13.1 86 193-278 5-90 (99)
56 3md1_A Nuclear and cytoplasmic 99.7 4.2E-16 1.4E-20 135.3 11.6 81 197-277 2-82 (83)
57 3ns6_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 146.2 6.2 84 403-491 4-94 (100)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.7E-16 1.3E-20 136.3 10.7 81 403-488 5-85 (85)
59 2do4_A Squamous cell carcinoma 99.7 7.3E-16 2.5E-20 139.0 12.8 85 401-491 13-97 (100)
60 1whw_A Hypothetical protein ri 99.7 4.7E-16 1.6E-20 139.9 11.5 85 403-492 6-90 (99)
61 2x1f_A MRNA 3'-END-processing 99.7 4.4E-16 1.5E-20 139.4 11.0 83 405-492 2-84 (96)
62 2cqc_A Arginine/serine-rich sp 99.6 7.9E-16 2.7E-20 137.2 12.3 84 401-489 11-94 (95)
63 2e5h_A Zinc finger CCHC-type a 99.6 7.3E-16 2.5E-20 137.2 11.9 82 402-488 13-94 (94)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.1E-16 1.4E-20 154.2 11.0 121 157-277 11-153 (165)
65 2dnz_A Probable RNA-binding pr 99.6 5.5E-16 1.9E-20 138.3 10.8 83 404-491 4-86 (95)
66 2cpz_A CUG triplet repeat RNA- 99.6 6.3E-16 2.2E-20 143.2 11.4 86 401-491 21-106 (115)
67 2x1f_A MRNA 3'-END-processing 99.6 8.2E-16 2.8E-20 137.6 11.7 83 196-278 2-84 (96)
68 2cq0_A Eukaryotic translation 99.6 1.1E-15 3.9E-20 138.5 12.6 86 192-277 11-96 (103)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.6E-16 2.3E-20 134.7 10.7 82 193-274 4-85 (85)
70 2cq0_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 140.2 10.8 86 401-491 11-96 (103)
71 2dnz_A Probable RNA-binding pr 99.6 1.3E-15 4.4E-20 135.9 12.3 84 194-277 3-86 (95)
72 2dgs_A DAZ-associated protein 99.6 1.7E-15 6E-20 136.2 13.2 86 192-278 6-91 (99)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.7E-16 2.3E-20 139.7 10.4 84 403-491 10-93 (102)
74 2dgs_A DAZ-associated protein 99.6 6.7E-16 2.3E-20 138.9 10.4 84 402-491 7-90 (99)
75 1x5u_A Splicing factor 3B subu 99.6 8.4E-16 2.9E-20 139.8 11.1 86 401-491 11-96 (105)
76 1x5t_A Splicing factor 3B subu 99.6 4.9E-16 1.7E-20 138.8 9.4 83 404-491 4-87 (96)
77 2lea_A Serine/arginine-rich sp 99.6 1.1E-16 3.7E-21 152.9 5.3 82 404-490 46-127 (135)
78 2dgo_A Cytotoxic granule-assoc 99.6 1.4E-15 4.7E-20 140.8 12.6 86 401-491 11-96 (115)
79 2e5h_A Zinc finger CCHC-type a 99.6 1.5E-15 5E-20 135.2 12.1 83 192-274 12-94 (94)
80 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-15 3.5E-20 138.4 11.3 87 192-278 8-94 (102)
81 2cqc_A Arginine/serine-rich sp 99.6 1.3E-15 4.5E-20 135.7 11.6 85 191-275 10-94 (95)
82 2jrs_A RNA-binding protein 39; 99.6 7E-16 2.4E-20 141.4 9.9 86 401-491 22-107 (108)
83 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-15 1.1E-19 138.2 14.5 88 191-278 10-97 (115)
84 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.5E-21 140.0 5.7 81 197-277 2-84 (90)
85 1x5u_A Splicing factor 3B subu 99.6 1.4E-15 4.7E-20 138.4 11.6 86 192-277 11-96 (105)
86 3pgw_S U1-70K; protein-RNA com 99.6 2E-16 6.7E-21 180.1 7.3 157 118-278 9-184 (437)
87 3ns6_A Eukaryotic translation 99.6 2.8E-16 9.5E-21 141.9 6.8 83 195-277 5-94 (100)
88 1p27_B RNA-binding protein 8A; 99.6 7.8E-16 2.7E-20 140.3 9.7 83 403-490 21-103 (106)
89 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.9E-20 137.5 10.6 83 401-488 9-99 (99)
90 2dnm_A SRP46 splicing factor; 99.6 1.5E-15 5E-20 137.7 11.4 86 192-277 9-94 (103)
91 2do4_A Squamous cell carcinoma 99.6 1.9E-15 6.5E-20 136.2 12.0 84 193-277 14-97 (100)
92 3p5t_L Cleavage and polyadenyl 99.6 2E-16 6.9E-21 139.9 5.3 81 406-491 2-84 (90)
93 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4E-20 140.1 10.6 85 402-491 23-107 (110)
94 1x5t_A Splicing factor 3B subu 99.6 8.7E-16 3E-20 137.2 9.5 84 194-277 3-87 (96)
95 1x5s_A Cold-inducible RNA-bind 99.6 7.2E-16 2.5E-20 139.5 9.0 84 403-491 10-93 (102)
96 3s7r_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 132.4 11.4 80 402-487 8-87 (87)
97 2dnm_A SRP46 splicing factor; 99.6 7.5E-16 2.6E-20 139.7 9.0 85 402-491 10-94 (103)
98 2jrs_A RNA-binding protein 39; 99.6 1.4E-15 4.9E-20 139.3 10.9 86 192-277 22-107 (108)
99 1s79_A Lupus LA protein; RRM, 99.6 4.5E-16 1.5E-20 141.3 7.4 82 402-490 8-89 (103)
100 2la6_A RNA-binding protein FUS 99.6 1.6E-15 5.6E-20 136.4 11.1 84 191-274 8-99 (99)
101 1x4h_A RNA-binding protein 28; 99.6 2.4E-15 8.3E-20 138.1 12.3 87 192-278 11-103 (111)
102 2dnh_A Bruno-like 5, RNA bindi 99.6 1.7E-15 5.9E-20 137.7 11.1 84 402-491 12-98 (105)
103 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.3E-20 137.9 10.1 87 191-277 7-93 (102)
104 2cpf_A RNA binding motif prote 99.6 1E-15 3.4E-20 137.5 9.3 83 404-491 4-89 (98)
105 2cpz_A CUG triplet repeat RNA- 99.6 1.8E-15 6.2E-20 140.1 11.3 87 192-278 21-107 (115)
106 1sjq_A Polypyrimidine tract-bi 99.6 8.6E-16 2.9E-20 139.0 8.7 82 401-491 12-93 (105)
107 1p27_B RNA-binding protein 8A; 99.6 1.5E-15 5.2E-20 138.3 10.5 85 193-277 20-104 (106)
108 2cph_A RNA binding motif prote 99.6 1.6E-15 5.4E-20 138.4 10.6 86 401-491 11-98 (107)
109 3ucg_A Polyadenylate-binding p 99.6 1.9E-15 6.4E-20 133.0 10.6 80 405-490 6-85 (89)
110 2div_A TRNA selenocysteine ass 99.6 1.4E-15 4.9E-20 136.7 9.8 86 192-277 5-95 (99)
111 2dnh_A Bruno-like 5, RNA bindi 99.6 3.4E-15 1.2E-19 135.8 12.3 86 192-278 11-99 (105)
112 4a8x_A RNA-binding protein wit 99.6 1.5E-15 5.3E-20 133.2 9.7 81 405-490 4-85 (88)
113 2cph_A RNA binding motif prote 99.6 3.1E-15 1.1E-19 136.4 12.1 87 192-278 11-99 (107)
114 4a8x_A RNA-binding protein wit 99.6 2E-15 6.8E-20 132.5 10.3 83 195-277 3-86 (88)
115 3ulh_A THO complex subunit 4; 99.6 2.5E-15 8.4E-20 137.2 11.3 81 402-488 26-106 (107)
116 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.7E-15 5.9E-20 149.7 11.0 84 403-491 70-153 (165)
117 2khc_A Testis-specific RNP-typ 99.6 2.1E-15 7.3E-20 140.2 11.0 83 401-488 36-118 (118)
118 2dng_A Eukaryotic translation 99.6 4.1E-15 1.4E-19 134.8 12.6 85 191-277 10-94 (103)
119 2ywk_A Putative RNA-binding pr 99.6 1.9E-15 6.7E-20 134.7 10.3 82 402-489 13-94 (95)
120 3lqv_A PRE-mRNA branch site pr 99.6 5.3E-16 1.8E-20 143.6 6.8 104 99-222 6-109 (115)
121 1oo0_B CG8781-PA, drosophila Y 99.6 2.5E-15 8.4E-20 138.0 11.2 86 192-277 22-107 (110)
122 2dng_A Eukaryotic translation 99.6 2.3E-15 7.8E-20 136.5 10.6 82 403-491 13-94 (103)
123 1wi8_A EIF-4B, eukaryotic tran 99.6 2.4E-15 8.1E-20 136.7 10.7 82 403-491 13-95 (104)
124 2div_A TRNA selenocysteine ass 99.6 1.6E-15 5.5E-20 136.4 9.4 83 403-490 7-94 (99)
125 2cpf_A RNA binding motif prote 99.6 2.3E-15 7.8E-20 135.1 10.4 84 194-277 3-89 (98)
126 3pgw_S U1-70K; protein-RNA com 99.6 4.7E-16 1.6E-20 177.0 7.3 83 404-491 101-183 (437)
127 1wi8_A EIF-4B, eukaryotic tran 99.6 5.1E-15 1.7E-19 134.5 12.7 84 192-277 11-95 (104)
128 1u6f_A Tcubp1, RNA-binding pro 99.6 4.1E-15 1.4E-19 142.5 12.7 86 401-491 38-123 (139)
129 2wbr_A GW182, gawky, LD47780P; 99.6 2.9E-15 9.8E-20 129.6 10.3 74 404-488 6-79 (89)
130 2cpe_A RNA-binding protein EWS 99.6 2.2E-15 7.4E-20 139.0 10.3 86 401-491 11-104 (113)
131 3n9u_C Cleavage and polyadenyl 99.6 1.8E-15 6E-20 148.0 10.2 83 404-491 54-138 (156)
132 2d9p_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 134.9 11.9 85 192-278 11-95 (103)
133 2d9p_A Polyadenylate-binding p 99.6 2.3E-15 7.9E-20 136.4 10.3 83 402-491 12-94 (103)
134 2cq4_A RNA binding motif prote 99.6 1.7E-15 5.7E-20 140.1 9.5 82 404-491 24-105 (114)
135 3s7r_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 130.4 11.3 81 192-273 7-87 (87)
136 2dgp_A Bruno-like 4, RNA bindi 99.6 1.7E-15 5.9E-20 138.0 9.3 85 402-491 10-97 (106)
137 2cqd_A RNA-binding region cont 99.6 4.2E-15 1.4E-19 137.8 12.0 84 401-490 13-96 (116)
138 2cqi_A Nucleolysin TIAR; RNA r 99.6 6.8E-15 2.3E-19 133.3 13.0 83 402-491 12-94 (103)
139 3r27_A HnRNP L, heterogeneous 99.6 3.1E-15 1.1E-19 134.0 10.5 78 402-490 18-97 (100)
140 2dgp_A Bruno-like 4, RNA bindi 99.6 2.5E-15 8.6E-20 136.9 10.2 86 192-277 9-97 (106)
141 2dgx_A KIAA0430 protein; RRM d 99.6 4.2E-15 1.4E-19 133.1 11.4 79 404-490 8-90 (96)
142 2kxn_B Transformer-2 protein h 99.6 1.5E-15 5.2E-20 143.7 8.9 85 401-490 42-126 (129)
143 2cq3_A RNA-binding protein 9; 99.6 7.5E-15 2.6E-19 133.0 13.2 84 401-491 11-94 (103)
144 2cqp_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 135.5 9.2 83 403-490 13-95 (98)
145 3ucg_A Polyadenylate-binding p 99.6 2.7E-15 9.3E-20 132.0 9.9 80 196-276 6-85 (89)
146 2dgx_A KIAA0430 protein; RRM d 99.6 5E-15 1.7E-19 132.5 11.7 83 192-277 5-91 (96)
147 2cpe_A RNA-binding protein EWS 99.6 4.9E-15 1.7E-19 136.6 12.0 87 192-278 11-105 (113)
148 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.4E-20 137.7 8.4 84 405-493 8-91 (104)
149 2kxn_B Transformer-2 protein h 99.6 2.3E-15 7.8E-20 142.5 9.8 87 191-277 41-127 (129)
150 2fy1_A RNA-binding motif prote 99.6 2.6E-15 9E-20 139.4 10.0 83 403-491 5-87 (116)
151 1s79_A Lupus LA protein; RRM, 99.6 2E-15 6.9E-20 137.0 8.6 80 194-275 9-88 (103)
152 2fy1_A RNA-binding motif prote 99.6 5.1E-15 1.7E-19 137.4 11.5 85 193-278 4-88 (116)
153 2rs2_A Musashi-1, RNA-binding 99.6 3.7E-15 1.3E-19 136.8 10.5 85 401-491 21-105 (109)
154 2dh8_A DAZ-associated protein 99.6 1.9E-15 6.6E-20 137.4 8.5 84 402-491 13-96 (105)
155 2cqg_A TDP-43, TAR DNA-binding 99.6 8.4E-15 2.9E-19 132.7 12.6 84 401-491 11-94 (103)
156 2khc_A Testis-specific RNP-typ 99.6 3.3E-15 1.1E-19 138.9 10.1 83 192-274 36-118 (118)
157 1sjq_A Polypyrimidine tract-bi 99.6 2.7E-15 9.4E-20 135.7 9.1 82 191-278 11-94 (105)
158 3ex7_B RNA-binding protein 8A; 99.6 2.5E-15 8.5E-20 141.5 9.2 85 402-491 19-103 (126)
159 2j76_E EIF-4B, EIF4B, eukaryot 99.6 9.4E-16 3.2E-20 138.4 6.0 82 402-490 16-98 (100)
160 3ulh_A THO complex subunit 4; 99.6 6.4E-15 2.2E-19 134.4 11.6 82 192-274 25-106 (107)
161 2ek1_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 135.2 7.5 80 404-488 14-93 (95)
162 2ywk_A Putative RNA-binding pr 99.6 4.3E-15 1.5E-19 132.5 10.1 82 192-274 12-93 (95)
163 2dhg_A TRNA selenocysteine ass 99.6 1.7E-15 5.9E-20 137.5 7.6 84 402-491 6-91 (104)
164 2mss_A Protein (musashi1); RNA 99.6 1.5E-15 5E-20 129.2 6.6 75 198-273 1-75 (75)
165 2cqp_A RNA-binding protein 12; 99.6 3.1E-15 1.1E-19 134.2 9.1 84 193-276 12-95 (98)
166 2dgw_A Probable RNA-binding pr 99.6 6.8E-15 2.3E-19 130.1 11.1 80 403-490 8-87 (91)
167 2dgv_A HnRNP M, heterogeneous 99.6 6.5E-15 2.2E-19 130.4 11.0 84 192-277 4-87 (92)
168 1x4e_A RNA binding motif, sing 99.6 8.9E-16 3E-20 134.0 5.3 80 404-488 4-83 (85)
169 2cqd_A RNA-binding region cont 99.6 1.1E-14 3.7E-19 135.0 12.9 85 192-277 13-97 (116)
170 2mss_A Protein (musashi1); RNA 99.6 1.3E-15 4.3E-20 129.7 6.1 75 407-487 1-75 (75)
171 1x4e_A RNA binding motif, sing 99.6 1.5E-15 5E-20 132.6 6.6 81 194-274 3-83 (85)
172 1x4h_A RNA-binding protein 28; 99.6 6.5E-15 2.2E-19 135.2 11.3 92 401-492 11-103 (111)
173 3n9u_C Cleavage and polyadenyl 99.6 3.1E-15 1.1E-19 146.3 9.6 83 195-277 54-138 (156)
174 3lqv_A PRE-mRNA branch site pr 99.6 4.1E-15 1.4E-19 137.6 10.0 80 403-490 6-85 (115)
175 2dhg_A TRNA selenocysteine ass 99.6 3.7E-15 1.3E-19 135.3 9.4 86 192-278 5-92 (104)
176 2cq3_A RNA-binding protein 9; 99.6 1.6E-14 5.5E-19 130.8 13.6 86 191-278 10-95 (103)
177 1p1t_A Cleavage stimulation fa 99.6 2.7E-15 9.1E-20 136.2 8.3 84 195-278 7-90 (104)
178 2m2b_A RNA-binding protein 10; 99.6 1.4E-15 4.9E-20 144.3 6.7 83 402-490 20-108 (131)
179 2dgv_A HnRNP M, heterogeneous 99.6 4.5E-15 1.5E-19 131.5 9.4 82 403-491 6-87 (92)
180 2cpy_A RNA-binding protein 12; 99.6 3.4E-15 1.2E-19 138.1 8.9 83 403-492 13-96 (114)
181 1x4b_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 137.0 10.2 82 404-491 26-107 (116)
182 2do0_A HnRNP M, heterogeneous 99.6 8.5E-15 2.9E-19 135.2 11.4 83 402-490 12-94 (114)
183 3ex7_B RNA-binding protein 8A; 99.6 5.7E-15 1.9E-19 139.0 10.3 86 192-277 18-103 (126)
184 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.5E-14 5E-19 131.1 12.6 84 192-277 11-94 (103)
185 1u6f_A Tcubp1, RNA-binding pro 99.6 8.9E-15 3E-19 140.1 11.8 86 193-278 39-124 (139)
186 2cq1_A PTB-like protein L; RRM 99.6 8.5E-15 2.9E-19 132.2 10.9 81 402-491 12-92 (101)
187 2cpi_A CCR4-NOT transcription 99.6 4.7E-15 1.6E-19 136.5 9.4 84 403-491 13-102 (111)
188 2dgw_A Probable RNA-binding pr 99.6 1.1E-14 3.7E-19 128.8 11.4 83 192-277 6-88 (91)
189 2dh8_A DAZ-associated protein 99.6 5.3E-15 1.8E-19 134.5 9.7 86 192-278 12-97 (105)
190 2hvz_A Splicing factor, argini 99.6 2.6E-15 9E-20 135.5 7.6 76 406-491 1-76 (101)
191 2ek1_A RNA-binding protein 12; 99.6 2.9E-15 9.9E-20 133.5 7.7 82 193-274 12-93 (95)
192 3r27_A HnRNP L, heterogeneous 99.6 7.9E-15 2.7E-19 131.3 10.4 80 192-277 17-98 (100)
193 2rs2_A Musashi-1, RNA-binding 99.6 8.8E-15 3E-19 134.2 11.1 85 192-277 21-105 (109)
194 2kt5_A RNA and export factor-b 99.6 9.2E-15 3.2E-19 137.2 11.4 83 402-490 32-114 (124)
195 2nlw_A Eukaryotic translation 99.6 5E-15 1.7E-19 134.9 9.2 82 402-490 12-100 (105)
196 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.1E-15 1.1E-19 135.0 7.7 83 192-276 15-98 (100)
197 2wbr_A GW182, gawky, LD47780P; 99.6 6.8E-15 2.3E-19 127.2 9.3 75 194-274 5-79 (89)
198 2err_A Ataxin-2-binding protei 99.6 7.3E-15 2.5E-19 134.8 10.2 83 401-490 25-107 (109)
199 2do0_A HnRNP M, heterogeneous 99.6 3E-14 1E-18 131.5 14.5 85 192-277 11-95 (114)
200 2cpi_A CCR4-NOT transcription 99.6 6.7E-15 2.3E-19 135.5 9.7 85 193-277 12-102 (111)
201 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.4E-14 4.7E-19 138.7 12.3 82 401-487 59-140 (140)
202 2cq4_A RNA binding motif prote 99.6 8E-15 2.7E-19 135.5 10.2 82 195-277 24-105 (114)
203 1x4a_A Splicing factor, argini 99.6 2.3E-14 7.9E-19 131.2 13.2 83 401-491 18-100 (109)
204 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.1E-19 142.2 11.9 84 403-491 37-120 (156)
205 1x4d_A Matrin 3; structural ge 99.6 4.4E-15 1.5E-19 134.1 8.0 80 403-491 13-93 (102)
206 1x5o_A RNA binding motif, sing 99.6 1.5E-14 5E-19 133.7 11.6 84 401-490 21-112 (114)
207 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.7E-15 9.2E-20 128.2 6.1 76 197-273 1-76 (77)
208 2kt5_A RNA and export factor-b 99.6 1.9E-14 6.4E-19 135.1 12.4 86 192-278 31-116 (124)
209 2cqg_A TDP-43, TAR DNA-binding 99.6 2.5E-14 8.4E-19 129.6 12.8 85 192-278 11-95 (103)
210 2db1_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 136.3 9.9 82 403-491 15-99 (118)
211 2a3j_A U1 small nuclear ribonu 99.6 7.7E-15 2.6E-19 138.2 9.6 83 402-492 26-112 (127)
212 2dis_A Unnamed protein product 99.6 6.1E-15 2.1E-19 135.0 8.4 84 404-492 7-94 (109)
213 2ki2_A SS-DNA binding protein 99.6 1.3E-15 4.5E-20 134.4 3.8 80 406-491 2-81 (90)
214 2ad9_A Polypyrimidine tract-bi 99.6 6.4E-15 2.2E-19 136.6 8.5 81 402-491 28-108 (119)
215 2hvz_A Splicing factor, argini 99.5 5.5E-15 1.9E-19 133.4 7.8 76 197-277 1-76 (101)
216 2jwn_A Embryonic polyadenylate 99.5 1E-14 3.4E-19 136.9 9.8 80 405-490 36-115 (124)
217 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.8E-14 6.1E-19 140.9 11.9 86 192-277 35-120 (156)
218 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.2E-15 1.1E-19 127.7 5.8 77 406-488 1-77 (77)
219 1wel_A RNA-binding protein 12; 99.5 3.8E-15 1.3E-19 140.0 6.8 85 402-492 22-106 (124)
220 2cq1_A PTB-like protein L; RRM 99.5 3.9E-14 1.3E-18 127.8 13.2 81 192-278 11-93 (101)
221 2hgl_A HNRPF protein, heteroge 99.5 7E-15 2.4E-19 140.1 8.6 83 402-491 41-126 (136)
222 1x5o_A RNA binding motif, sing 99.5 2E-14 6.7E-19 132.8 11.4 83 193-276 22-112 (114)
223 1wg5_A Heterogeneous nuclear r 99.5 1.9E-14 6.6E-19 130.7 11.2 83 193-277 12-95 (104)
224 2nlw_A Eukaryotic translation 99.5 1.2E-14 4E-19 132.4 9.7 83 193-277 12-101 (105)
225 2m2b_A RNA-binding protein 10; 99.5 3.2E-15 1.1E-19 141.9 6.1 84 193-277 20-109 (131)
226 1x4b_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 134.3 10.3 83 195-278 26-108 (116)
227 2ki2_A SS-DNA binding protein 99.5 1.8E-15 6.2E-20 133.5 4.1 80 197-277 2-81 (90)
228 2dis_A Unnamed protein product 99.5 1.7E-14 5.6E-19 132.1 10.6 85 194-278 6-94 (109)
229 2cpy_A RNA-binding protein 12; 99.5 8.7E-15 3E-19 135.4 8.7 84 192-277 11-95 (114)
230 2err_A Ataxin-2-binding protei 99.5 1.5E-14 5.3E-19 132.6 10.2 84 191-276 24-107 (109)
231 1wez_A HnRNP H', FTP-3, hetero 99.5 1.1E-14 3.8E-19 131.9 9.1 83 192-277 11-93 (102)
232 2jwn_A Embryonic polyadenylate 99.5 1.3E-14 4.6E-19 136.0 10.0 82 195-277 35-116 (124)
233 2hgl_A HNRPF protein, heteroge 99.5 6.7E-15 2.3E-19 140.2 7.9 82 193-276 41-125 (136)
234 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.8E-14 6E-19 138.0 11.0 82 192-273 59-140 (140)
235 1wg5_A Heterogeneous nuclear r 99.5 9.9E-15 3.4E-19 132.7 8.7 81 403-490 13-94 (104)
236 1wez_A HnRNP H', FTP-3, hetero 99.5 6.9E-15 2.3E-19 133.3 7.6 80 403-490 13-92 (102)
237 2fc9_A NCL protein; structure 99.5 2.1E-14 7.2E-19 129.6 10.6 81 402-491 12-92 (101)
238 1x4a_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 129.9 12.4 83 192-277 18-100 (109)
239 1x4d_A Matrin 3; structural ge 99.5 1.6E-14 5.6E-19 130.4 9.7 79 193-277 12-93 (102)
240 2fc9_A NCL protein; structure 99.5 4.3E-14 1.5E-18 127.5 12.5 82 192-277 11-92 (101)
241 2cpx_A Hypothetical protein FL 99.5 6.6E-15 2.3E-19 136.2 7.1 85 402-491 22-106 (115)
242 1x4c_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 130.0 11.9 77 403-491 13-94 (108)
243 2ad9_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 132.0 11.5 81 192-278 27-109 (119)
244 1x4f_A Matrin 3; structural ge 99.5 1.1E-14 3.9E-19 133.4 8.4 82 401-491 21-103 (112)
245 2dnn_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 132.1 9.5 78 405-490 16-93 (109)
246 1wex_A Hypothetical protein (r 99.5 1.5E-14 5.1E-19 131.4 8.9 80 403-491 13-92 (104)
247 1wex_A Hypothetical protein (r 99.5 3.9E-14 1.3E-18 128.6 11.7 80 193-278 12-93 (104)
248 1fj7_A Nucleolin RBD1, protein 99.5 3E-15 1E-19 135.2 4.2 82 403-491 15-96 (101)
249 2jvr_A Nucleolar protein 3; RN 99.5 2E-14 6.9E-19 132.0 9.7 79 403-490 26-105 (111)
250 2a3j_A U1 small nuclear ribonu 99.5 2.2E-14 7.4E-19 135.1 9.9 83 193-278 26-112 (127)
251 1nu4_A U1A RNA binding domain; 99.5 1.1E-14 3.8E-19 130.2 7.6 83 402-492 5-91 (97)
252 2krb_A Eukaryotic translation 99.5 6E-15 2.1E-19 127.6 5.6 72 406-484 2-80 (81)
253 2la4_A Nuclear and cytoplasmic 99.5 1.9E-14 6.4E-19 129.9 8.9 77 403-490 25-101 (101)
254 1why_A Hypothetical protein ri 99.5 3.6E-14 1.2E-18 127.1 10.6 79 402-491 14-94 (97)
255 2xnq_A Nuclear polyadenylated 99.5 4.7E-14 1.6E-18 126.5 11.3 77 401-490 18-95 (97)
256 1x4c_A Splicing factor, argini 99.5 5E-14 1.7E-18 128.9 11.7 79 192-277 11-94 (108)
257 2db1_A Heterogeneous nuclear r 99.5 1.9E-14 6.3E-19 134.0 8.9 82 193-276 14-98 (118)
258 2fc8_A NCL protein; structure 99.5 4.1E-14 1.4E-18 127.9 10.9 82 402-491 12-93 (102)
259 1iqt_A AUF1, heterogeneous nuc 99.5 4.9E-15 1.7E-19 125.9 4.5 75 407-487 1-75 (75)
260 2dnq_A RNA-binding protein 4B; 99.5 2.9E-14 9.9E-19 125.8 9.6 76 403-491 6-81 (90)
261 2lmi_A GRSF-1, G-rich sequence 99.5 7E-15 2.4E-19 134.4 5.7 83 402-491 8-93 (107)
262 2hgn_A Heterogeneous nuclear r 99.5 4.5E-15 1.6E-19 141.9 4.6 121 153-277 2-124 (139)
263 2krb_A Eukaryotic translation 99.5 9.7E-15 3.3E-19 126.3 6.2 72 197-270 2-80 (81)
264 1x4g_A Nucleolysin TIAR; struc 99.5 3.5E-14 1.2E-18 130.1 10.3 79 402-491 22-100 (109)
265 2dnq_A RNA-binding protein 4B; 99.5 6.6E-14 2.3E-18 123.5 11.7 79 192-278 4-82 (90)
266 2ytc_A PRE-mRNA-splicing facto 99.5 4.5E-14 1.5E-18 123.0 10.2 76 402-488 9-85 (85)
267 1wel_A RNA-binding protein 12; 99.5 9.5E-15 3.3E-19 137.2 6.2 84 193-277 22-105 (124)
268 2e5j_A Methenyltetrahydrofolat 99.5 4.1E-14 1.4E-18 126.7 10.0 79 402-490 16-94 (97)
269 1iqt_A AUF1, heterogeneous nuc 99.5 6.9E-15 2.4E-19 125.0 4.6 75 198-273 1-75 (75)
270 2jvr_A Nucleolar protein 3; RN 99.5 2.7E-14 9.3E-19 131.1 8.8 80 193-276 25-105 (111)
271 2fc8_A NCL protein; structure 99.5 6.2E-14 2.1E-18 126.7 11.1 84 192-278 11-94 (102)
272 2jvo_A Nucleolar protein 3; nu 99.5 4.3E-14 1.5E-18 129.4 10.1 78 401-491 27-104 (108)
273 1why_A Hypothetical protein ri 99.5 6.2E-14 2.1E-18 125.5 10.9 80 192-277 13-94 (97)
274 1nu4_A U1A RNA binding domain; 99.5 2.7E-14 9.3E-19 127.7 8.4 82 193-277 5-90 (97)
275 2dnn_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 129.0 10.1 79 195-276 15-93 (109)
276 2dgt_A RNA-binding protein 30; 99.5 8.6E-14 3E-18 123.3 11.4 77 402-491 7-83 (92)
277 2cpj_A Non-POU domain-containi 99.5 4.9E-14 1.7E-18 126.7 9.5 79 402-491 12-90 (99)
278 2dgu_A Heterogeneous nuclear r 99.5 8.5E-14 2.9E-18 126.1 11.1 77 403-492 9-85 (103)
279 2lmi_A GRSF-1, G-rich sequence 99.5 1.3E-14 4.6E-19 132.5 5.8 83 192-276 7-92 (107)
280 3q2s_C Cleavage and polyadenyl 99.5 1.7E-14 5.8E-19 150.2 7.3 83 404-491 67-151 (229)
281 2lcw_A RNA-binding protein FUS 99.2 1.9E-15 6.6E-20 140.2 0.0 84 403-491 5-96 (116)
282 2cpd_A Apobec-1 stimulating pr 99.5 1.7E-13 6E-18 123.1 12.7 76 403-491 13-90 (99)
283 2cpj_A Non-POU domain-containi 99.5 7E-14 2.4E-18 125.7 10.1 80 192-277 11-90 (99)
284 1fj7_A Nucleolin RBD1, protein 99.5 6.5E-15 2.2E-19 132.9 3.3 83 193-277 14-96 (101)
285 1x4f_A Matrin 3; structural ge 99.5 3.8E-14 1.3E-18 129.9 8.4 80 193-278 22-104 (112)
286 2ytc_A PRE-mRNA-splicing facto 99.5 9.1E-14 3.1E-18 121.0 10.3 77 192-274 8-85 (85)
287 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.6E-19 130.5 5.8 80 404-491 8-87 (102)
288 1x4g_A Nucleolysin TIAR; struc 99.5 8.6E-14 3E-18 127.5 10.7 80 193-278 22-101 (109)
289 3egn_A RNA-binding protein 40; 99.5 1.4E-14 4.8E-19 139.5 5.6 85 402-491 42-131 (143)
290 2dnp_A RNA-binding protein 14; 99.5 8.4E-14 2.9E-18 122.8 10.2 76 402-490 6-81 (90)
291 1fjc_A Nucleolin RBD2, protein 99.5 5.1E-14 1.7E-18 125.7 8.8 80 402-491 13-92 (96)
292 2la4_A Nuclear and cytoplasmic 99.5 5E-14 1.7E-18 127.1 8.7 76 194-275 25-100 (101)
293 3q2s_C Cleavage and polyadenyl 99.5 2.8E-14 9.5E-19 148.6 8.0 82 195-276 67-150 (229)
294 2dha_A FLJ20171 protein; RRM d 99.5 2.9E-14 9.8E-19 133.4 7.0 81 404-491 22-106 (123)
295 1whx_A Hypothetical protein ri 99.5 4E-14 1.4E-18 130.3 7.8 76 404-490 9-84 (111)
296 2dgu_A Heterogeneous nuclear r 99.5 2.4E-13 8E-18 123.2 12.8 79 192-278 7-85 (103)
297 2cpx_A Hypothetical protein FL 99.5 2E-14 7E-19 132.8 5.8 86 193-278 22-107 (115)
298 2dgt_A RNA-binding protein 30; 99.5 2.6E-13 9.1E-18 120.1 12.6 79 192-278 6-84 (92)
299 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-13 4E-18 126.5 10.4 78 192-277 27-104 (108)
300 2f3j_A RNA and export factor b 99.5 6.9E-14 2.4E-18 139.7 9.4 84 401-490 84-167 (177)
301 2j8a_A Histone-lysine N-methyl 99.5 5.9E-14 2E-18 129.3 8.1 79 406-489 3-95 (136)
302 2xnq_A Nuclear polyadenylated 99.5 1.8E-13 6.2E-18 122.6 11.2 77 192-276 18-95 (97)
303 2lcw_A RNA-binding protein FUS 99.2 3.8E-15 1.3E-19 138.2 0.0 85 194-278 5-97 (116)
304 2e5j_A Methenyltetrahydrofolat 99.5 6.6E-14 2.3E-18 125.4 8.2 80 193-277 16-95 (97)
305 1whx_A Hypothetical protein ri 99.5 8.6E-14 3E-18 128.0 9.0 76 195-276 9-84 (111)
306 2cqh_A IGF-II mRNA-binding pro 99.5 7.5E-14 2.6E-18 123.9 8.2 77 403-491 6-84 (93)
307 2dnp_A RNA-binding protein 14; 99.5 2E-13 6.8E-18 120.4 10.9 78 192-277 5-82 (90)
308 1fjc_A Nucleolin RBD2, protein 99.5 7.7E-14 2.6E-18 124.6 8.1 81 192-277 12-92 (96)
309 2j8a_A Histone-lysine N-methyl 99.5 6.9E-14 2.4E-18 128.9 7.9 78 197-274 3-94 (136)
310 2kvi_A Nuclear polyadenylated 99.5 6.7E-14 2.3E-18 125.1 7.6 77 402-491 7-84 (96)
311 2e44_A Insulin-like growth fac 99.5 9E-14 3.1E-18 124.1 8.3 78 404-490 14-92 (96)
312 1wf1_A RNA-binding protein RAL 99.5 1.8E-13 6.1E-18 125.6 10.4 75 403-490 25-100 (110)
313 2cpd_A Apobec-1 stimulating pr 99.5 4E-13 1.4E-17 120.7 12.4 78 192-277 11-90 (99)
314 2xs2_A Deleted in azoospermia- 99.5 4.2E-14 1.4E-18 127.8 5.9 81 194-277 7-87 (102)
315 2hgm_A HNRPF protein, heteroge 99.5 4.8E-14 1.6E-18 132.3 6.3 80 403-490 40-121 (126)
316 1wg1_A KIAA1579 protein, homol 99.4 1.9E-13 6.5E-18 120.1 9.3 75 404-490 4-78 (88)
317 2hgn_A Heterogeneous nuclear r 99.4 2.4E-14 8.1E-19 136.9 3.7 81 403-491 44-124 (139)
318 3d2w_A TAR DNA-binding protein 99.4 2.4E-13 8.1E-18 119.9 9.8 78 402-491 8-85 (89)
319 2f3j_A RNA and export factor b 99.4 1.6E-13 5.5E-18 137.0 9.8 85 192-277 84-168 (177)
320 2e5g_A U6 snRNA-specific termi 99.4 1.9E-13 6.5E-18 121.6 9.2 77 404-491 7-83 (94)
321 1x5p_A Negative elongation fac 99.4 6.7E-13 2.3E-17 118.8 12.8 77 402-491 12-88 (97)
322 2cqh_A IGF-II mRNA-binding pro 99.4 1.5E-13 5E-18 122.0 8.4 78 193-277 5-84 (93)
323 2hgm_A HNRPF protein, heteroge 99.4 1.2E-13 4.1E-18 129.6 8.2 81 193-276 39-121 (126)
324 1wf1_A RNA-binding protein RAL 99.4 2.2E-13 7.4E-18 125.0 9.7 77 193-277 24-101 (110)
325 2kvi_A Nuclear polyadenylated 99.4 1.6E-13 5.4E-18 122.7 8.4 77 193-277 7-84 (96)
326 2dha_A FLJ20171 protein; RRM d 99.4 6.1E-14 2.1E-18 131.2 5.9 81 194-276 21-105 (123)
327 2pe8_A Splicing factor 45; RRM 99.4 4.7E-13 1.6E-17 121.6 11.4 81 404-489 7-93 (105)
328 2diu_A KIAA0430 protein; struc 99.4 1.8E-13 6E-18 119.5 8.1 72 406-492 10-86 (96)
329 2cq2_A Hypothetical protein LO 99.4 1.7E-13 6E-18 125.6 8.1 77 403-490 23-106 (114)
330 2diu_A KIAA0430 protein; struc 99.4 3.4E-13 1.2E-17 117.7 9.5 74 195-278 8-86 (96)
331 2e5g_A U6 snRNA-specific termi 99.4 4.4E-13 1.5E-17 119.3 10.4 79 193-277 5-83 (94)
332 1wg1_A KIAA1579 protein, homol 99.4 4.5E-13 1.5E-17 117.7 10.1 76 195-277 4-79 (88)
333 2e44_A Insulin-like growth fac 99.4 2.4E-13 8.3E-18 121.3 8.3 80 194-277 13-93 (96)
334 3zzy_A Polypyrimidine tract-bi 99.4 7E-13 2.4E-17 124.4 11.7 82 193-279 25-109 (130)
335 1x5p_A Negative elongation fac 99.4 1.2E-12 4E-17 117.2 12.5 79 192-278 11-89 (97)
336 3egn_A RNA-binding protein 40; 99.4 6.7E-14 2.3E-18 134.7 4.7 82 193-277 42-131 (143)
337 3d2w_A TAR DNA-binding protein 99.4 5.7E-13 1.9E-17 117.4 10.0 77 192-277 7-85 (89)
338 2cq2_A Hypothetical protein LO 99.4 3.2E-13 1.1E-17 123.9 8.2 80 192-277 21-107 (114)
339 2voo_A Lupus LA protein; RNA-b 99.4 1E-12 3.4E-17 133.1 12.7 114 161-276 63-187 (193)
340 1sjr_A Polypyrimidine tract-bi 99.4 7.1E-13 2.4E-17 129.1 10.5 81 193-277 43-125 (164)
341 2dnl_A Cytoplasmic polyadenyla 99.4 4.1E-13 1.4E-17 124.1 8.4 77 404-488 7-86 (114)
342 3zzy_A Polypyrimidine tract-bi 99.4 1.2E-12 4.1E-17 122.8 11.4 76 406-491 29-107 (130)
343 2hzc_A Splicing factor U2AF 65 99.4 7.4E-13 2.5E-17 115.7 8.8 72 99-186 4-86 (87)
344 2hzc_A Splicing factor U2AF 65 99.4 7.1E-13 2.4E-17 115.8 8.6 71 404-486 5-86 (87)
345 2dnl_A Cytoplasmic polyadenyla 99.4 7.9E-13 2.7E-17 122.1 9.4 77 194-273 6-85 (114)
346 1sjr_A Polypyrimidine tract-bi 99.4 9.3E-13 3.2E-17 128.2 10.0 78 405-491 46-125 (164)
347 2e5i_A Heterogeneous nuclear r 99.4 2.1E-12 7.4E-17 120.5 12.1 78 195-278 24-104 (124)
348 3beg_B Splicing factor, argini 99.4 5.5E-13 1.9E-17 123.4 7.6 76 194-276 14-94 (115)
349 3beg_B Splicing factor, argini 99.4 3.9E-13 1.3E-17 124.4 6.6 75 404-490 15-94 (115)
350 2pe8_A Splicing factor 45; RRM 99.4 2E-12 6.7E-17 117.6 10.8 83 193-275 5-93 (105)
351 2bz2_A Negative elongation fac 99.4 1.4E-12 4.8E-17 121.8 8.9 77 402-491 36-112 (121)
352 1wf0_A TDP-43, TAR DNA-binding 99.4 7E-13 2.4E-17 116.4 6.4 75 405-491 5-79 (88)
353 2e5i_A Heterogeneous nuclear r 99.3 6.4E-12 2.2E-16 117.3 12.7 74 407-491 27-103 (124)
354 2voo_A Lupus LA protein; RNA-b 99.3 2.3E-12 7.9E-17 130.5 10.5 79 405-490 109-187 (193)
355 1wf0_A TDP-43, TAR DNA-binding 99.3 1.6E-12 5.4E-17 114.1 7.8 77 194-277 3-79 (88)
356 3v4m_A Splicing factor U2AF 65 99.3 4E-12 1.4E-16 115.6 9.2 81 404-489 4-96 (105)
357 2bz2_A Negative elongation fac 99.3 3.9E-12 1.3E-16 118.8 9.2 78 192-277 35-112 (121)
358 2dit_A HIV TAT specific factor 99.3 9.3E-12 3.2E-16 114.5 10.2 81 402-491 12-103 (112)
359 3u1l_A PRE-mRNA-splicing facto 99.3 4.8E-12 1.6E-16 131.4 8.0 79 402-491 131-230 (240)
360 2dit_A HIV TAT specific factor 99.2 2.8E-11 9.4E-16 111.3 11.3 84 192-279 11-105 (112)
361 3ue2_A Poly(U)-binding-splicin 99.2 1.4E-11 4.9E-16 114.2 9.2 81 404-489 19-108 (118)
362 3u1l_A PRE-mRNA-splicing facto 99.2 1E-11 3.5E-16 128.9 8.5 79 193-277 131-230 (240)
363 3v4m_A Splicing factor U2AF 65 99.2 2.3E-11 7.8E-16 110.5 9.3 82 194-275 3-96 (105)
364 1jmt_A Splicing factor U2AF 35 99.2 7.9E-12 2.7E-16 113.4 3.9 72 410-487 20-103 (104)
365 1jmt_A Splicing factor U2AF 35 99.2 9.9E-12 3.4E-16 112.7 4.2 72 201-273 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.2 5.6E-11 1.9E-15 110.1 9.0 80 195-274 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.1E-10 1.4E-14 101.0 10.1 75 405-491 10-91 (100)
368 3s6e_A RNA-binding protein 39; 99.1 3.7E-10 1.3E-14 103.9 9.9 78 403-489 5-92 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.1 9.1E-10 3.1E-14 98.8 11.6 75 196-277 10-91 (100)
370 3s6e_A RNA-binding protein 39; 99.0 3.4E-10 1.2E-14 104.2 7.5 85 556-654 6-92 (114)
371 3tht_A Alkylated DNA repair pr 99.0 6.3E-10 2.2E-14 121.5 9.3 76 402-488 15-97 (345)
372 3tht_A Alkylated DNA repair pr 99.0 8.2E-10 2.8E-14 120.6 9.5 77 192-274 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 98.8 7.3E-09 2.5E-13 89.6 8.3 75 402-490 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.8 5.5E-09 1.9E-13 96.3 7.9 81 401-490 14-96 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.7 6.2E-08 2.1E-12 83.8 8.4 75 194-277 5-87 (91)
376 1owx_A Lupus LA protein, SS-B, 98.6 8.3E-08 2.8E-12 88.5 9.2 76 192-273 14-93 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.6 7.1E-08 2.4E-12 83.8 7.0 73 401-487 11-92 (95)
378 3dxb_A Thioredoxin N-terminall 98.5 1.6E-07 5.4E-12 96.9 9.1 78 406-488 125-211 (222)
379 3dxb_A Thioredoxin N-terminall 98.4 4.1E-07 1.4E-11 93.8 8.4 67 208-274 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.4 2.7E-07 9.1E-12 80.2 4.6 72 193-273 12-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.1 1.8E-05 6.1E-10 70.1 10.3 73 404-487 20-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.7 6.5E-05 2.2E-09 66.5 7.4 73 194-272 19-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.6 0.00023 8E-09 62.6 9.2 89 99-209 6-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.4 0.00055 1.9E-08 60.2 8.6 73 404-490 7-84 (104)
385 1uw4_A UPF3X; nonsense mediate 97.2 0.0011 3.7E-08 57.6 8.2 81 558-653 2-86 (91)
386 1wey_A Calcipressin 1; structu 97.1 0.00089 3.1E-08 59.2 6.5 73 406-489 6-83 (104)
387 1whv_A Poly(A)-specific ribonu 96.8 0.0027 9.3E-08 55.1 7.3 59 192-259 12-70 (100)
388 1wey_A Calcipressin 1; structu 96.7 0.0057 2E-07 54.0 8.3 75 196-276 5-84 (104)
389 1uw4_A UPF3X; nonsense mediate 96.4 0.01 3.4E-07 51.5 8.4 68 406-478 2-71 (91)
390 3ctr_A Poly(A)-specific ribonu 96.2 0.0036 1.2E-07 54.6 4.1 54 197-259 7-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 96.0 0.021 7.2E-07 51.8 8.3 71 99-186 22-93 (119)
392 1whv_A Poly(A)-specific ribonu 95.9 0.023 7.8E-07 49.4 7.5 55 405-468 16-70 (100)
393 2l08_A Regulator of nonsense t 95.7 0.023 8E-07 49.6 7.2 79 195-273 8-93 (97)
394 1wwh_A Nucleoporin 35, nucleop 95.6 0.054 1.9E-06 49.1 9.3 76 404-492 23-99 (119)
395 3ctr_A Poly(A)-specific ribonu 95.1 0.025 8.4E-07 49.4 5.1 54 406-468 7-60 (101)
396 2l08_A Regulator of nonsense t 94.0 0.076 2.6E-06 46.4 5.6 78 406-488 10-94 (97)
397 3p3d_A Nucleoporin 53; structu 93.8 0.044 1.5E-06 50.4 4.0 77 405-488 7-97 (132)
398 3p3d_A Nucleoporin 53; structu 93.2 0.12 4E-06 47.6 5.7 85 100-186 6-95 (132)
399 3pq1_A Poly(A) RNA polymerase; 93.1 0.04 1.4E-06 62.1 3.0 57 99-170 51-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 91.6 0.09 3.1E-06 59.2 3.5 56 405-466 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 73.7 5.8 0.0002 45.3 7.8 57 194-259 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 62.2 13 0.00045 42.3 7.6 57 558-638 441-497 (507)
403 4eyt_A Telomerase associated p 29.4 2.5E+02 0.0086 23.5 10.9 81 404-492 11-93 (129)
404 3lpe_A Putative transcription 22.8 3.2E+02 0.011 22.9 8.1 53 127-218 39-91 (92)
405 4e8u_A Putative uncharacterize 21.9 1.2E+02 0.004 29.1 5.5 57 197-256 13-81 (172)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8e-42 Score=369.47 Aligned_cols=247 Identities=21% Similarity=0.268 Sum_probs=225.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...++|||+|||+++|+++|+++|+.|| |.+|.+ +.++|||||+|.+.++|.+|+..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 83 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR 83 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------------ETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---------------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 5678999999999999999999999999 999987 467899999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
|+.|.+... ...++|||+|||+.+|+++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|..|+..|
T Consensus 84 g~~i~v~~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 84 ERELSVQLQ------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp TEECEEEEC------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEEEec------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 999999753 24569999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHH
Q 002920 259 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIAR 338 (865)
Q Consensus 259 ng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (865)
+|..|.|++|.|.|+.+.....
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~~---------------------------------------------------------- 179 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLTP---------------------------------------------------------- 179 (284)
T ss_dssp TTCEETTEECEEEECCGGGCCT----------------------------------------------------------
T ss_pred CCCEeCCcEEEEEECCCCCCCc----------------------------------------------------------
Confidence 9999999999999985432100
Q ss_pred HHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCC-
Q 002920 339 KVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL- 417 (865)
Q Consensus 339 ~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~v- 417 (865)
.....++|||+|||+++
T Consensus 180 --------------------------------------------------------------~~~~~~~l~v~nlp~~~~ 197 (284)
T 3smz_A 180 --------------------------------------------------------------ALLHSRCLCVDRLPPGFN 197 (284)
T ss_dssp --------------------------------------------------------------TTTSCSEEEEECCCTTCC
T ss_pred --------------------------------------------------------------ccCCccEEEEecCCcccC
Confidence 11234799999999996
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhh
Q 002920 418 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 493 (865)
Q Consensus 418 teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~ 493 (865)
|+++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.++...
T Consensus 198 ~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 198 DVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD-----GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCSSSCH
T ss_pred CHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC-----CCccCCeEEEEEEecCCCcc
Confidence 999999999999999999999886 79999999999999999999999999 99999999999999887653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.3e-42 Score=374.04 Aligned_cols=253 Identities=19% Similarity=0.276 Sum_probs=214.5
Q ss_pred cccCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCC
Q 002920 96 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 175 (865)
Q Consensus 96 ~~~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~ 175 (865)
..++..++|||+|||+++|+++|+++|+.||.|.+|+++.+. .| ++|||||+|.+.++|.+|+. |||.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----------~~-~~g~afV~f~~~~~A~~A~~-~~~~ 103 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL----------KK-NFRFARIEFARYDGALAAIT-KTHK 103 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT----------TS-SSEEEEEEESSHHHHHHHHT-TTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----------CC-CcEEEEEEECCHHHHHHHHH-hCCc
Confidence 344778999999999999999999999999999999998763 22 57999999999999999996 9999
Q ss_pred ccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEcccCCCCCccceEEEEECCHHHHHHH
Q 002920 176 EIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 254 (865)
Q Consensus 176 ~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~A 254 (865)
.|.|+.|.+... ..++|||+|||+.+++++|+++|+.|| .|..|.|+.+.. |.++|||||+|.+.++|..|
T Consensus 104 ~~~g~~i~v~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 104 VVGQNEIIVSHL-------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp EETTEECEEEEC-------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EeCCcEEEEEEC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 999999999764 467999999999999999999999999 999999998875 88999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHH
Q 002920 255 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 334 (865)
Q Consensus 255 l~~lng~~i~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 334 (865)
+..|||..|.|+.|.|.|+.+.......
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------- 203 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------- 203 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----------------------------------------------------------
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccc----------------------------------------------------
Confidence 9999999999999999998754311000
Q ss_pred HHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCC
Q 002920 335 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 414 (865)
Q Consensus 335 ~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP 414 (865)
.......++|||+|||
T Consensus 204 ----------------------------------------------------------------~~~~~~~~~l~v~nlp 219 (292)
T 2ghp_A 204 ----------------------------------------------------------------DSATLEGREIMIRNLS 219 (292)
T ss_dssp -------------------------------------------------------------------CCTTTEEEEEEEC
T ss_pred ----------------------------------------------------------------cccCCCCceEEEECCC
Confidence 0012235799999999
Q ss_pred CC-CCHHHHHHHhhccCCeeEEEEeecCC-CCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 415 FD-LDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 415 ~~-vteedL~e~Fs~fG~V~sv~i~~d~~-~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
+. +|+++|+++|+.||.|.+|.|+.+.. ||.++|||||+|.+.++|.+|+ .|| |..|+|++|.|.||.++
T Consensus 220 ~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-----g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 220 TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-----RSLLGNREISVSLADKK 291 (292)
T ss_dssp TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-----TEEETTEEEEEEECCCC
T ss_pred cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-----CCEECCcEEEEEEecCC
Confidence 99 99999999999999999999998875 5999999999999999999999 999 99999999999999876
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.9e-40 Score=357.29 Aligned_cols=243 Identities=21% Similarity=0.282 Sum_probs=216.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+++|+++|+++|+.|| |.+|.+ +.++|||||+|.+.++|..|+..|||..|.|++|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999 998988 4578999999999999999999999999999999999852
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+
T Consensus 94 ~------------------------------------------------------------------------------- 94 (284)
T 3smz_A 94 T------------------------------------------------------------------------------- 94 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
.++|||+|||+++|+++|+++|+.||.|.+
T Consensus 95 --------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~ 124 (284)
T 3smz_A 95 --------------------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLER 124 (284)
T ss_dssp --------------------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred --------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeE
Confidence 258999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccchhhh
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLA 514 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l~l~ 514 (865)
|.++.+..+|.++|||||+|.+.++|.+|+..|+ |..|+|++|.|.|+.++....
T Consensus 125 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~i~v~~a~~~~~~~-------------------- 179 (284)
T 3smz_A 125 CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-----GKPLGPRTLYVHWTDAGQLTP-------------------- 179 (284)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCGGGCCT--------------------
T ss_pred EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCCCCc--------------------
Confidence 9999998899999999999999999999999999 999999999999987542100
Q ss_pred ccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCccC-CHHHHHHHHHHHHHhhhccCCCCe
Q 002920 515 KEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSM-TEKGLKKLCIDAVVSRASKQKPVI 593 (865)
Q Consensus 515 ~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~v-tee~L~~lF~~~v~~~~~~~~G~I 593 (865)
.....++|||+|||..+ |+++|+++|+ +||.|
T Consensus 180 --------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~---------~~G~i 212 (284)
T 3smz_A 180 --------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALS---------AVHSP 212 (284)
T ss_dssp --------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTC---------SSSCC
T ss_pred --------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhh---------CCCCe
Confidence 00134789999999995 9999999999 69999
Q ss_pred EEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEeccc
Q 002920 594 KQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDN 655 (865)
Q Consensus 594 ~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~e~ 655 (865)
..|.|+++. + +.++|||||+|.++++|..|+..|||. .++ ++.|.|.||...
T Consensus 213 ~~v~i~~~~-~------g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~-g~~l~v~~a~~~ 264 (284)
T 3smz_A 213 TFCQLACGQ-D------GQLKGFAVLEYETAEMAEEAQQQADGL--SLG-GSHLRVSFCAPG 264 (284)
T ss_dssp SEEEEEECS-S------CCEEEEEEEECSSHHHHHHHHHHHTTC--EET-TEECEEEECCSS
T ss_pred EEEEEEECC-C------CCcccEEEEEeCCHHHHHHHHHHhCCC--ccC-CeEEEEEEecCC
Confidence 999999875 3 478999999999999999999999997 444 477789999654
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.9e-39 Score=347.85 Aligned_cols=249 Identities=17% Similarity=0.247 Sum_probs=208.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.+.. + ++|||||+|.+.++|..||. |+|..|.|++|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999763 3 58999999999999999996 899999999999998
Q ss_pred cCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002920 273 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 352 (865)
Q Consensus 273 a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~p 352 (865)
+.
T Consensus 115 ~~------------------------------------------------------------------------------ 116 (292)
T 2ghp_A 115 LT------------------------------------------------------------------------------ 116 (292)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 51
Q ss_pred CCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-C
Q 002920 353 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG-E 431 (865)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG-~ 431 (865)
.++|||+|||+.+++++|+++|+.|| .
T Consensus 117 ----------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 117 ----------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp ----------------------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 25899999999999999999999999 9
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhhhhhhhhhcccccccccch
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNL 511 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~d~~~l 511 (865)
|.+|.++.+.. |.++|||||+|.+.++|.+|+..|| |..|+|++|.|.|+.++......
T Consensus 145 i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~~~~--------------- 203 (292)
T 2ghp_A 145 ALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN-----GLKIEGYTLVTKVSNPLEKSKRT--------------- 203 (292)
T ss_dssp CCEEECC--------CCEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCCC---------------------
T ss_pred eEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCcccccc---------------
Confidence 99999988864 7899999999999999999999999 99999999999998765321100
Q ss_pred hhhccccccCCCCCCCCCCchhHHHHHHHHHHhhhhcCCCCCCCccCeEEEeCCCcc-CCHHHHHHHHHHHHHhhhccCC
Q 002920 512 YLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS-MTEKGLKKLCIDAVVSRASKQK 590 (865)
Q Consensus 512 ~l~~~g~i~~~s~~~~~~s~~~~~~r~~~~~~~~~~l~~p~~~~s~~~L~V~NLP~~-vtee~L~~lF~~~v~~~~~~~~ 590 (865)
.......++|||+|||.. +|+++|+++|. +|
T Consensus 204 ---------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~---------~~ 235 (292)
T 2ghp_A 204 ---------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFE---------GF 235 (292)
T ss_dssp ------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHG---------GG
T ss_pred ---------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHh---------cc
Confidence 000123578999999999 99999999999 59
Q ss_pred CCeEEEEEeeccc-CCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEec
Q 002920 591 PVIKQIKFLQSLK-KGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 653 (865)
Q Consensus 591 G~I~~v~i~~d~~-~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~p~~fg~~~rliV~fA~ 653 (865)
|.|..|+|+++.. +| .++|||||+|.++++|..|+ .|||. .++ +++|.|.||.
T Consensus 236 G~v~~v~i~~~~~~tg------~~~g~afV~F~~~~~A~~A~-~l~g~--~~~-g~~i~V~~a~ 289 (292)
T 2ghp_A 236 GSIEKINIPAGQKEHS------FNNCCAFMVFENKDSAERAL-QMNRS--LLG-NREISVSLAD 289 (292)
T ss_dssp SCEEEEECCSCCC---------CCCEEEEEEESSHHHHHHHG-GGTTE--EET-TEEEEEEECC
T ss_pred CCeeEEEEEecCCcCC------CCceEEEEEeCCHHHHHHHH-HhcCC--EEC-CcEEEEEEec
Confidence 9999999998754 33 78999999999999999999 99997 444 4677799995
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=6e-31 Score=272.27 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=154.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
..+.++|||+|||+++|+++|+++|+.||.|.+|+|+++..+|+++|||||+|.+.++|.+||..||+..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002920 273 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 352 (865)
Q Consensus 273 a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~p 352 (865)
+......
T Consensus 92 ~~~~~~~------------------------------------------------------------------------- 98 (213)
T 4f02_A 92 SQRDPSL------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCCTHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7533200
Q ss_pred CCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe
Q 002920 353 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 432 (865)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V 432 (865)
.....++|||+|||+.+|+++|+++|+.||.|
T Consensus 99 ------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 99 ------------------------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp ------------------------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ------------------------------------------------cccccccceECCcccccHHHHHHHHHhhcCCe
Confidence 00012589999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhh
Q 002920 433 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 493 (865)
Q Consensus 433 ~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~ 493 (865)
.+|+|+.+. +.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.++...
T Consensus 131 ~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln-----g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 131 LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCCHHHH
T ss_pred EEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEcCCCccc
Confidence 999999885 4479999999999999999999999 99999999999999987543
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-30 Score=252.74 Aligned_cols=163 Identities=20% Similarity=0.359 Sum_probs=151.1
Q ss_pred CEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeE
Q 002920 102 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 181 (865)
Q Consensus 102 rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~ 181 (865)
|+|||+|||+++|+++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 799999999999999999999999999999998773 5789999999999999999999999999999999
Q ss_pred EEEeccCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 182 VWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 182 i~v~~~~~~--~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
|.+...... ......++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..||
T Consensus 71 i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 71 VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 998765332 345567899999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCCeeEEEEecC
Q 002920 260 GQKFGKRPIAVDWAV 274 (865)
Q Consensus 260 g~~i~gr~l~V~~a~ 274 (865)
|..|.|++|.|.|+.
T Consensus 151 g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 151 GQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEETTEECEEEESC
T ss_pred CCccCCcEEEEEecC
Confidence 999999999999985
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4.6e-30 Score=254.20 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=153.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999985
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+..
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (168)
T 1b7f_A 82 PGG----------------------------------------------------------------------------- 84 (168)
T ss_dssp CCS-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 432
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
.....++|||+|||..+++++|+++|++||.|..
T Consensus 85 ----------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 85 ----------------------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp ----------------------------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred ----------------------------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 0112369999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEEEEEEc
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKA 487 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L~V~~A 487 (865)
+.++.+..+|.++|||||+|.+.++|.+|+..|| |..|.| ++|.|.||
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-----NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCEecCCCeEEEEEeC
Confidence 9999998889999999999999999999999999 999988 99999986
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-30 Score=251.64 Aligned_cols=165 Identities=23% Similarity=0.380 Sum_probs=151.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
++|||+|||+++|+++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999887 4779999999999999999999999999999999999998543
Q ss_pred CccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCc
Q 002920 277 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 356 (865)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~ 356 (865)
...
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (166)
T 3md3_A 80 QQS----------------------------------------------------------------------------- 82 (166)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 200
Q ss_pred chhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEE
Q 002920 357 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 436 (865)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~ 436 (865)
.....++|||+|||..+|+++|+++|+.||.|.++.
T Consensus 83 --------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 83 --------------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp --------------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred --------------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 112346999999999999999999999999999999
Q ss_pred EeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEcc
Q 002920 437 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 437 i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~ 488 (865)
++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CCccCCcEEEEEecC
Confidence 99998899999999999999999999999999 999999999999985
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=6.8e-30 Score=253.00 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=154.7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCC
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 179 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G 179 (865)
+.++|||+|||+++++++|+++|+.||.|.+|.++.++. +|.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---------TTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC---------CCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 468999999999999999999999999999999976643 78899999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 180 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 180 ~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
+.|.+............++|||+|||+.+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|+..||
T Consensus 73 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 73 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp EECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 99999877766666778999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CceeCC--eeEEEEec
Q 002920 260 GQKFGK--RPIAVDWA 273 (865)
Q Consensus 260 g~~i~g--r~l~V~~a 273 (865)
|..|.| ++|.|.||
T Consensus 153 g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 153 NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCEecCCCeEEEEEeC
Confidence 999977 99999986
No 10
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=3.3e-30 Score=266.70 Aligned_cols=168 Identities=19% Similarity=0.214 Sum_probs=151.3
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
.+.+||||+|||+++|+++|+++|+.||.|.+|+|+.++. +|+++|||||+|.+.++|.+||..||+..+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---------TRRSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC---------CCCccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 4568999999999999999999999999999999988754 7899999999999999999999999999999
Q ss_pred CeEEEEeccCCCC--CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHH
Q 002920 179 GGTVWARQLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 256 (865)
Q Consensus 179 G~~i~v~~~~~~~--~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~ 256 (865)
|+.|++....... ......+|||+|||+.+|+++|+++|+.||.|..|.|+++. +.++|||||+|.+.++|.+||.
T Consensus 84 g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 84 GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHH
T ss_pred CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHH
Confidence 9999887654322 12345789999999999999999999999999999999885 4589999999999999999999
Q ss_pred HhCCceeCCeeEEEEecCCCC
Q 002920 257 KFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 257 ~lng~~i~gr~l~V~~a~~k~ 277 (865)
.|||..|.|++|.|.|+.++.
T Consensus 162 ~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 162 KMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHTTCEETTEECEEEECCCHH
T ss_pred HhCCCEECCEEEEEEEcCCCc
Confidence 999999999999999998764
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=8.2e-30 Score=251.78 Aligned_cols=164 Identities=27% Similarity=0.487 Sum_probs=151.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+|||+.+++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|+|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999854
Q ss_pred CCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002920 276 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 355 (865)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~ 355 (865)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 320
Q ss_pred cchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 002920 356 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 435 (865)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv 435 (865)
....++|||+|||..+++++|+++|+.||.|..+
T Consensus 85 ----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 85 ----------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp ----------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred ----------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 0123689999999999999999999999999999
Q ss_pred EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE--EEEEEc
Q 002920 436 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ--LTVLKA 487 (865)
Q Consensus 436 ~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~--L~V~~A 487 (865)
.++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|+. |.|.||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-----CCccCCCccceEEEeC
Confidence 999998899999999999999999999999999 99999964 888886
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=8.9e-30 Score=258.90 Aligned_cols=179 Identities=20% Similarity=0.331 Sum_probs=153.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||.. ++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3455778999999999999999999999999999999999998999999999999999999999985 999999999999
Q ss_pred EecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002920 271 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 350 (865)
Q Consensus 271 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~ 350 (865)
.++.+......
T Consensus 87 ~~~~~~~~~~~--------------------------------------------------------------------- 97 (196)
T 1l3k_A 87 KRAVSREDSQR--------------------------------------------------------------------- 97 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCcccccc---------------------------------------------------------------------
Confidence 99864321000
Q ss_pred CCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC
Q 002920 351 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 430 (865)
Q Consensus 351 ~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG 430 (865)
.......++|||+|||+++|+++|+++|+.||
T Consensus 98 ------------------------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 129 (196)
T 1l3k_A 98 ------------------------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129 (196)
T ss_dssp -----------------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS
T ss_pred ------------------------------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC
Confidence 00111247999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCchhh
Q 002920 431 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 493 (865)
Q Consensus 431 ~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~~~ 493 (865)
.|..|.|+.+..+|.++|||||+|.+.++|.+|+.. + |..|+|+.|.|.||.++...
T Consensus 130 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-----~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-----YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-----CCEETTEECEEEECC-----
T ss_pred CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-----CcEECCEEEEEEecCChhHh
Confidence 999999999988999999999999999999999976 7 89999999999999987654
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.2e-29 Score=250.50 Aligned_cols=164 Identities=26% Similarity=0.335 Sum_probs=153.2
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCe
Q 002920 101 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 180 (865)
Q Consensus 101 ~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~ 180 (865)
.++|||+|||+++++++|+++|+.||.|.+|.++.++. +|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 58999999999999999999999999999999987743 789999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 181 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 181 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
.|.+............++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||
T Consensus 73 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 73 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp ECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 99998776655566778999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ceeCCee--EEEEec
Q 002920 261 QKFGKRP--IAVDWA 273 (865)
Q Consensus 261 ~~i~gr~--l~V~~a 273 (865)
..|.|+. |.|.||
T Consensus 153 ~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPSGATEPITVKFA 167 (167)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CccCCCccceEEEeC
Confidence 9999965 888875
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.9e-30 Score=255.60 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=151.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
++.++|||+|||+++|+++|+++|+.||.|.+|+++.++. +|.++|||||+|.+.++|.+|+.. +..+.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~a~~A~~~--~~~~~ 69 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA---------TGRSRGFGFLSFEKPSSVDEVVKT--QHILD 69 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT---------TSSCCSCEEEEESSTHHHHHHHHS--CCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC---------CCCccceEEEEEccHHHHHHHHhc--ccccC
Confidence 3578999999999999999999999999999999988753 789999999999999999999984 67899
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
|+.|.+............++|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+. |
T Consensus 70 g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 70 GKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp TEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred CeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 999988765443334456799999999999999999999999999999999998899999999999999999999998 8
Q ss_pred CCceeCCeeEEEEecCCC
Q 002920 259 NGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 259 ng~~i~gr~l~V~~a~~k 276 (865)
+|..|.|++|.|.|+.|+
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999875
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3.2e-29 Score=254.77 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=150.1
Q ss_pred cCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 98 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
+...++|||+|||+++|+++|+++|+.||.|.+|.++.++. +|.++|||||+|.+.++|.+|+. +++..|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~-~~~~~~ 79 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---------TKRSRGFGFVTYATVEEVDAAMN-ARPHKV 79 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHH-TCSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---------CCCccceEEEEeCCHHHHHHHHh-cCCCEE
Confidence 35678999999999999999999999999999999987753 78899999999999999999998 599999
Q ss_pred CCeEEEEeccCCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHH
Q 002920 178 KGGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 251 (865)
Q Consensus 178 ~G~~i~v~~~~~~~------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A 251 (865)
.|+.|.+....... .....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|
T Consensus 80 ~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp TTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 99999987653321 223458999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEecCCCCc
Q 002920 252 ESAIQKFNGQKFGKRPIAVDWAVPKNI 278 (865)
Q Consensus 252 ~~Al~~lng~~i~gr~l~V~~a~~k~~ 278 (865)
.+||.. +|..|.|+.|.|.|+.++..
T Consensus 160 ~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHC-SCCEETTEECEEEECC----
T ss_pred HHHHHh-CCcEECCEEEEEEecCChhH
Confidence 999985 89999999999999988764
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.2e-29 Score=258.82 Aligned_cols=171 Identities=14% Similarity=0.237 Sum_probs=154.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...++|||+|||+++|+++|+++|+.||.|.+|+++.++. +|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV---------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C---------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---------CCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 4578999999999999999999999999999999987743 7889999999999999999999999999999
Q ss_pred CeEEEEeccCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECC
Q 002920 179 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 247 (865)
Q Consensus 179 G~~i~v~~~~~~~-----------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~ 247 (865)
|+.|.|....... .....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|.+
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 9999996654322 12456899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 002920 248 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 278 (865)
Q Consensus 248 ~e~A~~Al~~lng~~i~gr~l~V~~a~~k~~ 278 (865)
.++|.+|+..|||..|.|+.|.|.|+.++..
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999999999987653
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5.1e-30 Score=253.83 Aligned_cols=165 Identities=21% Similarity=0.423 Sum_probs=150.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
+.++|||+|||+++|+++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|..|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45799999999999999999999999999999999998899999999999999999999998 4678999999998874
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3210
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
....++|||+|||.++|+++|+++|+.||.|.+
T Consensus 84 -----------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 84 -----------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp -----------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred -----------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 001358999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
|.++.+..+|.++|||||+|.+.++|.+|+. ++ |..|+|++|.|.||.++
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK-----FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS-----EECSSSSCEEEEECCCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC-----CEEeCCeEEEEeecCCC
Confidence 9999998899999999999999999999998 88 99999999999999876
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.7e-29 Score=258.33 Aligned_cols=180 Identities=26% Similarity=0.396 Sum_probs=154.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+++|+++|+++|+.||.|.+|.|+++..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35699999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
..... ...... ...
T Consensus 107 ~~~~~------------------------------------------------------~~~~~~-~~~----------- 120 (216)
T 2qfj_A 107 NIGQA------------------------------------------------------QPIIDQ-LAE----------- 120 (216)
T ss_dssp CCGGG------------------------------------------------------HHHHHH-HHH-----------
T ss_pred Ccccc------------------------------------------------------chhhhh-hhc-----------
Confidence 33210 000000 000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 434 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s 434 (865)
.....++|||+|||.++|+++|+++|+.||.|..
T Consensus 121 ----------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 121 ----------------------------------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp ----------------------------------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred ----------------------------------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 1113479999999999999999999999999999
Q ss_pred EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 435 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 435 v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
|.|+.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.++.
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-----g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-----LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBCSSSBCEEEECSSCS
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc-----CCEeCCcEEEEEEecCCC
Confidence 9999998899999999999999999999999999 999999999999998763
No 19
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=6.4e-29 Score=247.13 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=148.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcc----C-------CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHH
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 167 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~ 167 (865)
++.++|||+|||+++|+++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------------~~~~g~afV~f~~~~~A~~ 66 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------------ETTTTEEEEEESSHHHHHH
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 467899999999999999999999999 6 7777766 4568999999999999999
Q ss_pred HHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECC
Q 002920 168 SVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 247 (865)
Q Consensus 168 Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~ 247 (865)
|+ .|||..|.|+.|.+............++|||+|||+.+|+++|+++|+.||.|..|.++.++.+|.++|||||+|.+
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred HH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 99 79999999999999887666666678999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 248 KRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 248 ~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.++|.+|+..|||..|.|+.|.|.||
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999997
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.1e-28 Score=243.82 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=146.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCC--CccceEEEEECCHHHHHHHHHHhCCceeC---CeeEE
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---KRPIA 269 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~lng~~i~---gr~l~ 269 (865)
..++|||+|||+++|+++|+++|+.||.|.+|.|++++.+| .++|||||+|.+.++|..|+..|+|..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998876 89999999999999999999999998875 67777
Q ss_pred EEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCC
Q 002920 270 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 349 (865)
Q Consensus 270 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 349 (865)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 777532210
Q ss_pred CCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcc
Q 002920 350 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 429 (865)
Q Consensus 350 ~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~f 429 (865)
.....++|||+|||+++|+++|+++|++|
T Consensus 91 ---------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 91 ---------------------------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSF 119 (175)
T ss_dssp ---------------------------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred ---------------------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC
Confidence 11124699999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec---CeEEEEEEcc
Q 002920 430 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKAL 488 (865)
Q Consensus 430 G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~---Gr~L~V~~A~ 488 (865)
|.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|| |..+. |++|.|.||.
T Consensus 120 G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 120 GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH-----QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TSCCCTTCSSCCEEEECC
T ss_pred CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc-----CCcccCCCCCCeEEEecC
Confidence 999999999886 68999999999999999999999999 87665 4999999973
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.7e-28 Score=244.40 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=145.1
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCC--CccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEG--CKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g--~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
++++|||+|||+++|+++|+++|+.||.|.+|+++.++. +| +++|||||+|.+.++|.+|+..|||..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS---------QNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS---------SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---------CCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 468999999999999999999999999999999987743 33 8999999999999999999999999887
Q ss_pred C---CeEEEEeccCCC-CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHH
Q 002920 178 K---GGTVWARQLGGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 253 (865)
Q Consensus 178 ~---G~~i~v~~~~~~-~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~ 253 (865)
. ++.+.+...... ......++|||+|||+.+|+++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp CTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHH
T ss_pred ccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHH
Confidence 6 566666554322 223467899999999999999999999999999999999986 58999999999999999999
Q ss_pred HHHHhCCceeC---CeeEEEEec
Q 002920 254 AIQKFNGQKFG---KRPIAVDWA 273 (865)
Q Consensus 254 Al~~lng~~i~---gr~l~V~~a 273 (865)
|+..|||..+. +++|.|.||
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCcccCCCCCCeEEEec
Confidence 99999998875 499999997
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=9.9e-28 Score=244.16 Aligned_cols=163 Identities=19% Similarity=0.302 Sum_probs=145.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcc----C-------CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHH
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 167 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~ 167 (865)
+.+++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------------~~~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------------ETTTTEEEEEESCSHHHHH
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 357999999999999999999999999 4 5665555 5678999999999999999
Q ss_pred HHHHhcCCccCCeEEEEeccCCCC--------------------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEE
Q 002920 168 SVALLHQKEIKGGTVWARQLGGEG--------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 227 (865)
Q Consensus 168 Al~~lng~~i~G~~i~v~~~~~~~--------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~ 227 (865)
|+ .|||..|.|+.|.|....... .....++|||+|||+.+++++|+++|+.||.|..|.
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 99 799999999999987543211 124568999999999999999999999999999999
Q ss_pred EcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 228 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 228 i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.++.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99998899999999999999999999999999999999999999998764
No 23
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.4e-27 Score=237.46 Aligned_cols=158 Identities=26% Similarity=0.446 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
+.++|||+|||+++|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 777777643 5899999999999999999 7999999
Q ss_pred CCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhh
Q 002920 264 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 343 (865)
Q Consensus 264 ~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (865)
.|++|.|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~------------------------------------------------------------------ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ------------------------------------------------------------------ 89 (172)
T ss_dssp TTEECEEECCSSCC------------------------------------------------------------------
T ss_pred cCceeeecCCcccC------------------------------------------------------------------
Confidence 99999999864321
Q ss_pred cccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHH
Q 002920 344 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 423 (865)
Q Consensus 344 ~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~ 423 (865)
.....++|||+|||..+|+++|+
T Consensus 90 ---------------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~ 112 (172)
T 2g4b_A 90 ---------------------------------------------------------PLPGAHKLFIGGLPNYLNDDQVK 112 (172)
T ss_dssp ---------------------------------------------------------CCTTTTCEEEECCCTTCCHHHHH
T ss_pred ---------------------------------------------------------CCCCCCEEEEEcCCCcCCHHHHH
Confidence 00113689999999999999999
Q ss_pred HHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEc
Q 002920 424 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 487 (865)
Q Consensus 424 e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A 487 (865)
++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||
T Consensus 113 ~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 113 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-----TCEETTEECEEEEC
T ss_pred HHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CCEECCeEEEEEeC
Confidence 999999999999999998899999999999999999999999999 99999999999997
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.6e-28 Score=242.66 Aligned_cols=166 Identities=22% Similarity=0.334 Sum_probs=145.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|..||+ |||..|.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567889999999999999999999999998776 344555678899999999999999999995 99999999999999
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
++.+....
T Consensus 87 ~~~~~~~~------------------------------------------------------------------------ 94 (175)
T 1fje_B 87 KPKGRDSK------------------------------------------------------------------------ 94 (175)
T ss_dssp CCCCSSCS------------------------------------------------------------------------
T ss_pred cCCCcccc------------------------------------------------------------------------
Confidence 98643200
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 431 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~ 431 (865)
.....++|||+|||..+|+++|+++|+.||.
T Consensus 95 -------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~ 125 (175)
T 1fje_B 95 -------------------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALE 125 (175)
T ss_dssp -------------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSE
T ss_pred -------------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCe
Confidence 0112469999999999999999999999998
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCc
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 490 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k 490 (865)
|..+ ..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.++
T Consensus 126 v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 126 IRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT-----EEEETTEEEEEEECSSC
T ss_pred EEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEecCCC
Confidence 8765 4578899999999999999999999999 99999999999999875
No 25
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3.3e-27 Score=240.31 Aligned_cols=182 Identities=24% Similarity=0.400 Sum_probs=147.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
..++|||+|||+++|+++|+++|+.| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45799999999999999999999999 4 5666655 446899999999999999999 7999999
Q ss_pred CCeeEEEEecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhh
Q 002920 264 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 343 (865)
Q Consensus 264 ~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (865)
.|++|.|.++.+......... . .. .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~------------------------------------~---~~-~--------------- 100 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSE------------------------------------N---PS-V--------------- 100 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSS------------------------------------C---SS-C---------------
T ss_pred cCceEEEeCCCCCCCCCCCcC------------------------------------C---Cc-C---------------
Confidence 999999999865431100000 0 00 0
Q ss_pred cccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHH
Q 002920 344 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 423 (865)
Q Consensus 344 ~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~ 423 (865)
..|. ..........++|||+|||+.+++++|+
T Consensus 101 ------~~~~------------------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 132 (198)
T 2yh0_A 101 ------YVPG------------------------------------------VVSTVVPDSAHKLFIGGLPNYLNDDQVK 132 (198)
T ss_dssp ------CCTT------------------------------------------SSCCCSSCCCCEEEEECCCTTCCHHHHH
T ss_pred ------CCCC------------------------------------------CccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 0000 0000022345899999999999999999
Q ss_pred HHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEEccCch
Q 002920 424 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 424 e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|| |..|+|+.|.|.||.++.
T Consensus 133 ~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 133 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT-----TCEETTEECEEEESCCCC
T ss_pred HHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEECCCCC
Confidence 999999999999999998899999999999999999999999999 999999999999998763
No 26
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=7.6e-28 Score=240.35 Aligned_cols=163 Identities=17% Similarity=0.281 Sum_probs=143.4
Q ss_pred cCCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCcc
Q 002920 98 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 177 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i 177 (865)
+...++|||+|||+++++++|+++|..||.|..+.+ .+. .+|.++|||||+|.+.++|.+|++ |||..|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~---------~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~ 78 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDV---------RTGTNRKFGYVDFESAEDLEKALE-LTGLKV 78 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEE---------EEETTTTEEEEEESSHHHHHHHHH-GGGEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EEC---------CCCccccEEEEEECCHHHHHHHHh-cCCCEe
Confidence 467899999999999999999999999998766322 221 468899999999999999999995 999999
Q ss_pred CCeEEEEeccCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHH
Q 002920 178 KGGTVWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 255 (865)
Q Consensus 178 ~G~~i~v~~~~~~--~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al 255 (865)
.|+.|.|...... ......++|||+|||+.+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+
T Consensus 79 ~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 79 FGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred CCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 9999999776432 233467899999999999999999999999998766 347889999999999999999999
Q ss_pred HHhCCceeCCeeEEEEecCCC
Q 002920 256 QKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 256 ~~lng~~i~gr~l~V~~a~~k 276 (865)
..|||..|.|+.|.|.|+.++
T Consensus 154 ~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEEETTEEEEEEECSSC
T ss_pred HHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999775
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.4e-26 Score=237.73 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=143.9
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 195 QKWKLIIRNIP-FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 195 ~~~~l~V~nLp-~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
+.++|||+||| +.+|+++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|+.||..|||..|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred CCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002920 274 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 353 (865)
Q Consensus 274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps 353 (865)
........... . .. .+. .. ...........|....
T Consensus 78 ~~~~~~p~~~~-----~-----~~-----------~~~-~~----~~~~~~~~~~r~~~~~------------------- 112 (205)
T 3tyt_A 78 KQPAIMPGQSY-----G-----LE-----------DGS-CS----YKDFSESRNNRFSTPE------------------- 112 (205)
T ss_dssp SCSCCCCCSCC-----B-----CT-----------TSC-BS----EEECTTCTTCSCSSHH-------------------
T ss_pred cCCccCCCccc-----c-----cc-----------cCC-cc----ccccCCCccccccCcc-------------------
Confidence 65432100000 0 00 000 00 0000000000000000
Q ss_pred CCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe-
Q 002920 354 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV- 432 (865)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V- 432 (865)
. .. ......++++|||+|||+++|+++|+++|++||.|
T Consensus 113 ------------------~----~~-------------------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 113 ------------------Q----AA-------------------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp ------------------H----HT-------------------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred ------------------c----cc-------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 0 00 00012345799999999999999999999999999
Q ss_pred -eEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe----EEEEEEc
Q 002920 433 -VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR----QLTVLKA 487 (865)
Q Consensus 433 -~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr----~L~V~~A 487 (865)
.+++++.+. +..+|||||+|.+.++|.+||..|| |..|.|+ ++.|.+|
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ln-----g~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLN-----HYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHT-----TCEECCSSSSSCEECEEE
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCCccCCCCCcceEEEec
Confidence 899887764 4567999999999999999999999 9999887 7888876
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=9.5e-27 Score=239.10 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=137.6
Q ss_pred CCCEEEEcCCC-CcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 100 VARTVIIGGLL-NADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 100 ~~rtVfV~nLp-~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
+.++|||+||| +.+++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|..||..|||..|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46799999999 89999999999999999999999643 3699999999999999999999999999
Q ss_pred CeEEEEeccCCCC-------------------------------------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q 002920 179 GGTVWARQLGGEG-------------------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 221 (865)
Q Consensus 179 G~~i~v~~~~~~~-------------------------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G 221 (865)
|+.|.|....... ...+.++|||+|||+.+|+++|+++|+.||
T Consensus 69 g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 69 GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp TEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred CceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 9999986432100 012346899999999999999999999999
Q ss_pred ce--EEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCe----eEEEEec
Q 002920 222 LV--WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR----PIAVDWA 273 (865)
Q Consensus 222 ~I--~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr----~l~V~~a 273 (865)
.| .+|+++.+. |.++|||||+|.+.++|..||..|||..|.|. ++.|.++
T Consensus 149 ~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 149 VKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99 899998764 55679999999999999999999999999776 6777765
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=9e-26 Score=243.33 Aligned_cols=240 Identities=17% Similarity=0.229 Sum_probs=151.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
....++|||+|||+++|+++|+ ++|+.||.|.+|.|++ +|.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999966 8999999999999986 68899999999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCcccCcCCCC------C--C-------CC--CCCC---CCCCCC---------Ccc--cCCCCCCC
Q 002920 269 AVDWAVPKNIYSSGGAAAGVQNKG------D--G-------NS--DSGS---DDDLGD---------DDA--ETASDDSN 317 (865)
Q Consensus 269 ~V~~a~~k~~~~~~~~~~~~~~~~------~--~-------~~--~~~~---~~~~~~---------~~~--g~~~~~~~ 317 (865)
.|.|+................... . . .. .... ...... ... ........
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 999997654321110000000000 0 0 00 0000 000000 000 00000000
Q ss_pred CccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccc
Q 002920 318 SSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQ 397 (865)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~ 397 (865)
........+.... ..+..+.... .+ ............
T Consensus 163 ~~~~p~~~~~~~~----------------~~~~~~~~~~--------------------------~~-~~~~~~~~~~~~ 199 (282)
T 3pgw_A 163 YMPPPGMIPPPGL----------------APGQIPPGAM--------------------------PP-QQLMPGQMPPAQ 199 (282)
T ss_pred CCCCCCCCCCCCC----------------CccccCcccC--------------------------cc-cccCccccCccC
Confidence 0000000000000 0000000000 00 000000000000
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 398 TEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 398 ~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
.......+++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|||||+|.+.++|.+|+..|| |..|
T Consensus 200 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~-----g~~~ 269 (282)
T 3pgw_A 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ-----GFKI 269 (282)
T ss_pred CccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC-----CcEe
Confidence 11134457899999999999999999999999999999988543 6899999999999999999999 9999
Q ss_pred c-CeEEEEEEcc
Q 002920 478 K-GRQLTVLKAL 488 (865)
Q Consensus 478 ~-Gr~L~V~~A~ 488 (865)
+ |+.|.|.||.
T Consensus 270 ~~g~~l~v~~ak 281 (282)
T 3pgw_A 270 TQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEEEec
Confidence 9 9999999985
No 30
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=9.5e-26 Score=235.86 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=148.1
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
....++|||+|||+ .+++++|+++|+.||.|.+|.|+.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999998864 7899999999999999999999999999999999
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
|+.+........... . .....+.. . .....+
T Consensus 106 ~a~~~~~~~~~~~~~----------~-----------~~~~~~~~----~---~~~~~~--------------------- 136 (229)
T 2adc_A 106 LSKHQNVQLPREGQE----------D-----------QGLTKDYG----N---SPLHRF--------------------- 136 (229)
T ss_dssp CCSCCCCCCCCSSSS----------T-----------TTTEEECT----T---CSSCCC---------------------
T ss_pred EecCccccCcccccc----------c-----------cccccccc----c---Cccccc---------------------
Confidence 997654221100000 0 00000000 0 000000
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG- 430 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG- 430 (865)
..+..........++++|||+|||..+++++|+++|+.||
T Consensus 137 ---------------------------------------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 137 ---------------------------------------KKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp ---------------------------------------CSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred ---------------------------------------CCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 0000000001223468999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec-CeEEEEEEccCc
Q 002920 431 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 490 (865)
Q Consensus 431 ~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~-Gr~L~V~~A~~k 490 (865)
.|.+|+++.+ .+|||||+|.+.++|.+|+..|| |..|+ |++|.|.||.++
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT-----TCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC-----CCccCCCCeEEEEEecCC
Confidence 9999988643 47999999999999999999999 99999 999999998754
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=9.7e-26 Score=243.06 Aligned_cols=160 Identities=15% Similarity=0.192 Sum_probs=141.6
Q ss_pred cCCCCEEEEcCCCCcccHHHHH----HHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhc
Q 002920 98 QRVARTVIIGGLLNADMAEEVH----RLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 173 (865)
Q Consensus 98 ~~~~rtVfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~ln 173 (865)
..+.++|||+|||+++++++|+ ++|+.||.|.+|+++. +|.++|||||+|.+.++|.+|+..||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------------~~~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------------SLKMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------------CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3678999999999999999966 8999999999999842 57899999999999999999999999
Q ss_pred CCccCCeEEEEeccCCC---------------------------------------------------------------
Q 002920 174 QKEIKGGTVWARQLGGE--------------------------------------------------------------- 190 (865)
Q Consensus 174 g~~i~G~~i~v~~~~~~--------------------------------------------------------------- 190 (865)
|..|.|+.|.|......
T Consensus 74 g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (282)
T 3pgw_A 74 GFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRI 153 (282)
T ss_pred CCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccc
Confidence 99999999987532110
Q ss_pred ------------------------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc
Q 002920 191 ------------------------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL 222 (865)
Q Consensus 191 ------------------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~ 222 (865)
......++|||+|||+.+++++|+++|+.||.
T Consensus 154 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 233 (282)
T 3pgw_A 154 MHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPG 233 (282)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCC
Confidence 01124578999999999999999999999999
Q ss_pred eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEecC
Q 002920 223 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAV 274 (865)
Q Consensus 223 I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~-gr~l~V~~a~ 274 (865)
|..|.|+.+. +|||||+|.+.++|.+|+..|||..|. |+.|+|.|+.
T Consensus 234 i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 234 FKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred eEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999998643 589999999999999999999999999 9999999985
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.2e-25 Score=235.12 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=141.8
Q ss_pred cCCCCEEEEcCCCC-cccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCc
Q 002920 98 QRVARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 176 (865)
Q Consensus 98 ~~~~rtVfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~ 176 (865)
..+.++|||+|||+ ++++++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|.+|+..|||..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~--------------~~g~afV~F~~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------------KKENALVQMADGNQAQLAMSHLNGHK 96 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT--------------TSCCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC--------------CCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 35689999999999 9999999999999999999999655 16899999999999999999999999
Q ss_pred cCCeEEEEeccCCC-----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q 002920 177 IKGGTVWARQLGGE-----------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 221 (865)
Q Consensus 177 i~G~~i~v~~~~~~-----------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G 221 (865)
|.|+.|.|...... ....+.++|||+|||+.+++++|+++|+.||
T Consensus 97 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 97 LHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred ECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 99999998643211 0012368999999999999999999999999
Q ss_pred -ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEecCCC
Q 002920 222 -LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 276 (865)
Q Consensus 222 -~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~-gr~l~V~~a~~k 276 (865)
.|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |++|.|.|+.++
T Consensus 177 ~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 177 GVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999653 4789999999999999999999999999 999999999754
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=8.3e-26 Score=230.42 Aligned_cols=192 Identities=21% Similarity=0.229 Sum_probs=146.1
Q ss_pred CcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 196 KWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 196 ~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
.++|||+|||+ .+++++|+++|+.||.|.+|.|+.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998864 7899999999999999999999999999999999987
Q ss_pred CCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002920 275 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 354 (865)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ps~ 354 (865)
+............. +...... ......+
T Consensus 78 ~~~~~~~~~~~~~~---------------------~~~~~~~-------~~~~~r~------------------------ 105 (198)
T 1qm9_A 78 HQNVQLPREGQEDQ---------------------GLTKDYG-------NSPLHRF------------------------ 105 (198)
T ss_dssp CCSCCCSSSSSSSS---------------------SCEEESS-------CCCTTSS------------------------
T ss_pred CCCcCCCCcCCccc---------------------ccccccc-------CCchhhc------------------------
Confidence 65422110000000 0000000 0000000
Q ss_pred CcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-Cee
Q 002920 355 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG-EVV 433 (865)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG-~V~ 433 (865)
.+ +..........++++|||+|||..+++++|+++|+.|| .|.
T Consensus 106 ----------------------------~~--------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 106 ----------------------------KK--------PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp ----------------------------SS--------CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred ----------------------------cC--------ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce
Confidence 00 00000001223468999999999999999999999999 999
Q ss_pred EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec-CeEEEEEEccCc
Q 002920 434 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 490 (865)
Q Consensus 434 sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~-Gr~L~V~~A~~k 490 (865)
+|.++.+ .+|||||+|.+.++|.+|+..|| |..|+ |++|.|.|+.++
T Consensus 150 ~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 150 GFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEESST-----TSSCEEEECSSHHHHHHHHHHHT-----SSCCSSCCSCCEEEECCC
T ss_pred EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc-----CCccCCCCeEEEEeeccc
Confidence 9988653 37999999999999999999999 99999 999999998753
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=7.2e-26 Score=241.57 Aligned_cols=156 Identities=20% Similarity=0.202 Sum_probs=142.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...++|||+|||+++|+++|+++|+.||.|.+|.+. +++|||||.|.+.++|.+|+..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------------~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------------RDRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------------CCCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 567899999999999999999999999999999983 34799999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
|+.|.|.... ...+|||+|||+.+|+++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..|
T Consensus 85 g~~l~v~~a~------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 85 SRPLRIRFAT------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp TEECEEEECC------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeEeeecc------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 9999997653 3569999999999999999999999999999999999 48999999999999999999999999
Q ss_pred C-CceeC---CeeEEEEecCCC
Q 002920 259 N-GQKFG---KRPIAVDWAVPK 276 (865)
Q Consensus 259 n-g~~i~---gr~l~V~~a~~k 276 (865)
| +..+. +++|.|.++.+.
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 4 55554 999999998754
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.3e-25 Score=239.49 Aligned_cols=160 Identities=28% Similarity=0.441 Sum_probs=145.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345678999999999999999999999999999999964 47999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCcccCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002920 272 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 351 (865)
Q Consensus 272 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~ 351 (865)
|+.+
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 9732
Q ss_pred CCCCcchhhhcCCCCCCchhhhhhhccccccccccCCCCCCCCccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC
Q 002920 352 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 431 (865)
Q Consensus 352 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~ 431 (865)
+++|||+|||+.+|+++|+++|+.||.
T Consensus 96 -----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 96 -----------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp -----------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred -----------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 258999999999999999999999999
Q ss_pred eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec---CeEEEEEEccCch
Q 002920 432 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKALDKK 491 (865)
Q Consensus 432 V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~---Gr~L~V~~A~~k~ 491 (865)
|.+|.|+.+ .+|.++|||||+|.+.++|.+|+..||. |..+. |++|.|.++....
T Consensus 123 i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~----~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 123 VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD----GAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH----SCEESSSSCCBCEEEECCCEE
T ss_pred eEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC----CeEEecCCCceEEEeeccccC
Confidence 999999999 4899999999999999999999999951 56665 9999999998754
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.1e-25 Score=229.56 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=140.2
Q ss_pred CCCEEEEcCCCC-cccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 100 VARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 100 ~~rtVfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
..++|||+|||+ .+++++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|.+|+..|||..|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--------------~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------------KKENALVQMADGNQAQLAMSHLNGHKLH 67 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--------------CSSCCEEECTTTHHHHHHHHHHTTCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--------------CCCEEEEEECCHHHHHHHHHHhCCCeec
Confidence 358999999999 9999999999999999999999654 1689999999999999999999999999
Q ss_pred CeEEEEeccCCC-----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC-c
Q 002920 179 GGTVWARQLGGE-----------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-L 222 (865)
Q Consensus 179 G~~i~v~~~~~~-----------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~ 222 (865)
|+.|.|...... ....+.++|||+|||..+++++|+++|+.|| .
T Consensus 68 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~ 147 (198)
T 1qm9_A 68 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 147 (198)
T ss_dssp SCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC
T ss_pred CeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC
Confidence 999988543211 0013478999999999999999999999999 9
Q ss_pred eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEecCCC
Q 002920 223 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 276 (865)
Q Consensus 223 I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~-gr~l~V~~a~~k 276 (865)
|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |++|.|.|+.++
T Consensus 148 v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 148 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999764 3799999999999999999999999999 999999998764
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=3.5e-20 Score=181.98 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=108.7
Q ss_pred CCccceEEEEECCHHHHHHHHHHhcCCccCCeEEEEec-------------cCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 002920 149 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ-------------LGGEGSKTQKWKLIIRNIPFKAKVNEIKD 215 (865)
Q Consensus 149 g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~-------------~~~~~~~~~~~~l~V~nLp~~~tee~L~~ 215 (865)
..++|||||+|.+.++|++|+..+++....+..+.+.. ..........++|||+|||+.+|+++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 46899999999999999999998876433322222111 01112334578999999999999999999
Q ss_pred hhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 216 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 216 ~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|++|.|.|+.+..
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999998899999999999999999999999999999999999999998764
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.3e-19 Score=176.10 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 143 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELR 143 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-----TEESSSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 35799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.||.++
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999865
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=2.8e-19 Score=166.06 Aligned_cols=80 Identities=36% Similarity=0.561 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+||..|| |..|+|++|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~-----~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 4689999999999999999999999999999999985 4479999999999999999999999 99999999999
Q ss_pred EEccCch
Q 002920 485 LKALDKK 491 (865)
Q Consensus 485 ~~A~~k~ 491 (865)
.++.++.
T Consensus 78 ~~a~~~~ 84 (115)
T 4f25_A 78 GRFKSRK 84 (115)
T ss_dssp EESSCCC
T ss_pred EECCCcc
Confidence 9998654
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=6e-19 Score=171.72 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=110.0
Q ss_pred CCccceEEEEECCHHHHHHHHHHh-cCCccCCeEEEEeccCC----------------CCCCCCCcEEEEcCCCCCCCHH
Q 002920 149 GCKMDASAVLYTTVKSACASVALL-HQKEIKGGTVWARQLGG----------------EGSKTQKWKLIIRNIPFKAKVN 211 (865)
Q Consensus 149 g~~~G~AfV~F~s~e~A~~Al~~l-ng~~i~G~~i~v~~~~~----------------~~~~~~~~~l~V~nLp~~~tee 211 (865)
...+|+++|+|.+.++|++|+..| ||..|.| .+.+..... .......++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 888755332 2234567899999999999999
Q ss_pred HHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 212 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 212 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
+|+++|+.||.|.+|.|+.+ ++|||||+|.+.++|..||..|||..|.|++|.|.|+.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999875 68999999999999999999999999999999999997653
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.1e-18 Score=162.06 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCC
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 179 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G 179 (865)
...+|||+|||+++++++|+++|+.||.|.+|+|+.+ .+.++|||||+|.+.++|++||..|||..|.|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-----------~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-----------ENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-----------TTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-----------CCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999999999999999999999999999876 34578999999999999999999999999999
Q ss_pred eEEEEeccCCC--------CCCCCCcEEEEcCCCCCCCHHH
Q 002920 180 GTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNE 212 (865)
Q Consensus 180 ~~i~v~~~~~~--------~~~~~~~~l~V~nLp~~~tee~ 212 (865)
+.|.|...... ......++|||+|||+++|++.
T Consensus 73 ~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 73 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EECEEEESSCCCC----------------------------
T ss_pred EEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 99998654321 1223456899999999999864
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=154.79 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+++|||+|||+++|+++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~~gr~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-----GLRLQSKTI 91 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 347899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccC
Q 002920 483 TVLKALD 489 (865)
Q Consensus 483 ~V~~A~~ 489 (865)
.|.||.|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999965
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2.1e-18 Score=167.94 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD-----GRTLCGCRVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS-----SSCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 4589999999999999999999999999999999865 58999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.||.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999765
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=152.98 Aligned_cols=83 Identities=30% Similarity=0.526 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+++|+++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 002920 273 AVP 275 (865)
Q Consensus 273 a~~ 275 (865)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=149.67 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-----g~~~~gr~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-----LTSVMGNII 78 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCchh
Q 002920 483 TVLKALDKKL 492 (865)
Q Consensus 483 ~V~~A~~k~~ 492 (865)
.|.+|.....
T Consensus 79 ~V~~a~~~~~ 88 (110)
T 3s8s_A 79 HAQLDIKGQQ 88 (110)
T ss_dssp EEEECSTTHH
T ss_pred EEEECCCCcH
Confidence 9999976543
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=149.30 Aligned_cols=82 Identities=15% Similarity=0.328 Sum_probs=76.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG-~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.|+. +..|+|++|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~----~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH----SLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT----EEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC----CeEECCEEEEE
Confidence 6899999999999999999999999 899999999999999999999999999999999998741 67899999999
Q ss_pred EEccCch
Q 002920 485 LKALDKK 491 (865)
Q Consensus 485 ~~A~~k~ 491 (865)
.||.++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998764
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=145.77 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~--V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+|||+|||+++|+++|+++|++||. |.+|+|++|+.+|.++|||||+|.+.++|.+|++.||... ..+.|+||+|.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~-~~~~i~Gr~i~ 88 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH-PPLKIDGKTIG 88 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS-SCEEETTEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC-CCceECCEEEE
Confidence 58999999999999999999999995 6789999999999999999999999999999999999210 01479999999
Q ss_pred EEEccC
Q 002920 484 VLKALD 489 (865)
Q Consensus 484 V~~A~~ 489 (865)
|.||.+
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=146.07 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh-CCceeCCeeEEEEec
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIAVDWA 273 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-ng~~i~gr~l~V~~a 273 (865)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++++.+|.++|||||+|.+.++|.+||+.| ++..|.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999999999999999999999999999999999977 466799999999999
Q ss_pred CCCCc
Q 002920 274 VPKNI 278 (865)
Q Consensus 274 ~~k~~ 278 (865)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=146.26 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.+.++|||+|||+.+++++|+++|+.||.|.+|.|++|+.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6553
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-17 Score=143.86 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc--eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc----eeCC
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGK 265 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~----~i~g 265 (865)
......+|||+|||+.+|+++|+++|++||. |.+|+|++|+.+|.++|||||+|.+.++|.+||+.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456789999999999999999999999995 678999999999999999999999999999999999997 5899
Q ss_pred eeEEEEecCC
Q 002920 266 RPIAVDWAVP 275 (865)
Q Consensus 266 r~l~V~~a~~ 275 (865)
++|.|.||..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 51
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=3.6e-17 Score=156.25 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=83.1
Q ss_pred eEEEEECCHHHHHHHHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCC
Q 002920 154 ASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 233 (865)
Q Consensus 154 ~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~ 233 (865)
|+|+.|.+...+..|+..++|....|+.-.. ...........++|||+|||+.+|+++|+++|+.||.|..|.|+.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMS-YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp -----------------------------CC-SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCC-cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 6889999999999999999888776654322 122233445678999999999999999999999999999999999988
Q ss_pred CCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 234 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 234 tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
+|.++|||||+|.+.++|++||..|||..|.|++|.|.|+.+..
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999998654
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=139.07 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 45799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.||.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999765
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.2e-16 Score=137.04 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=77.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-----CCeeCCcEEEEE
Confidence 589999999999999999999999999999999998899999999999999999999999999 999999999999
Q ss_pred EccCc
Q 002920 486 KALDK 490 (865)
Q Consensus 486 ~A~~k 490 (865)
||.++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99875
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=138.13 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+.+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 002920 274 VPK 276 (865)
Q Consensus 274 ~~k 276 (865)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=139.13 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987754
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=4.2e-16 Score=135.27 Aligned_cols=81 Identities=23% Similarity=0.535 Sum_probs=77.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
.+|||+|||+.+++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|||..|.|++|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999865
Q ss_pred C
Q 002920 277 N 277 (865)
Q Consensus 277 ~ 277 (865)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=6.2e-17 Score=146.21 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE
Q 002920 403 ELQNTIFICNLPF------DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 476 (865)
Q Consensus 403 ~~~~tLfV~NLP~------~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~ 476 (865)
..+++|||+|||+ ++++++|+++|++||.|.+|.|++++.+|.++|||||+|.+.++|.+|+..|| |..
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~ 78 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-----GKR 78 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCB
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-----Ccc
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999 999
Q ss_pred ecC-eEEEEEEccCch
Q 002920 477 LKG-RQLTVLKALDKK 491 (865)
Q Consensus 477 l~G-r~L~V~~A~~k~ 491 (865)
|+| ++|.|.+|.++.
T Consensus 79 ~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 79 LDLKHRLFLYTMKDVE 94 (100)
T ss_dssp SSSSCBCEEEESHHHH
T ss_pred cCCCeEEEEEECchhh
Confidence 999 999999998654
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=3.7e-16 Score=136.29 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 356899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 002920 483 TVLKAL 488 (865)
Q Consensus 483 ~V~~A~ 488 (865)
.|.||.
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999974
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=138.96 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||.++|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 86 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD-----GMTIKEN 86 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TEESSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34556899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=139.88 Aligned_cols=85 Identities=31% Similarity=0.480 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-----GQVFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-----TEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccCchh
Q 002920 483 TVLKALDKKL 492 (865)
Q Consensus 483 ~V~~A~~k~~ 492 (865)
.|.++.++..
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999987643
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=4.4e-16 Score=139.37 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=79.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
+++|||+|||.++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|| |..|+|+.|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-----GYQLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEE
Confidence 4799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccCchh
Q 002920 485 LKALDKKL 492 (865)
Q Consensus 485 ~~A~~k~~ 492 (865)
.+|.++..
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99987654
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=137.18 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 002920 481 QLTVLKALD 489 (865)
Q Consensus 481 ~L~V~~A~~ 489 (865)
+|.|.||.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=137.20 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-----NKQLFGRV 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-----CCeeCCcE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 002920 482 LTVLKAL 488 (865)
Q Consensus 482 L~V~~A~ 488 (865)
|.|.||.
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=4.1e-16 Score=154.23 Aligned_cols=121 Identities=24% Similarity=0.407 Sum_probs=80.4
Q ss_pred EEECCHHHHHHHHHHhcCCccC--CeEEEEec--------------------cCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 002920 157 VLYTTVKSACASVALLHQKEIK--GGTVWARQ--------------------LGGEGSKTQKWKLIIRNIPFKAKVNEIK 214 (865)
Q Consensus 157 V~F~s~e~A~~Al~~lng~~i~--G~~i~v~~--------------------~~~~~~~~~~~~l~V~nLp~~~tee~L~ 214 (865)
..|...++|..|+..|++.... |+.+.... ...+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999887655 44332211 0011223456789999999999999999
Q ss_pred HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 215 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 215 ~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|++|.|.|+.++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999999999999998899999999999999999999999999999999999999997664
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=138.26 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||..+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-----GFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEE
Confidence 45899999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.|+.++.
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 99998764
No 66
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=6.3e-16 Score=143.17 Aligned_cols=86 Identities=27% Similarity=0.411 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 95 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-----GFQIGMK 95 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.|+.++.
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=8.2e-16 Score=137.56 Aligned_cols=83 Identities=29% Similarity=0.520 Sum_probs=79.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCc
Q 002920 276 KNI 278 (865)
Q Consensus 276 k~~ 278 (865)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=138.48 Aligned_cols=86 Identities=27% Similarity=0.583 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998765
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=6.6e-16 Score=134.66 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|++|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 002920 273 AV 274 (865)
Q Consensus 273 a~ 274 (865)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=140.20 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||.++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 85 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-----GFGYDHL 85 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-----CCeeCCc
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.||.++.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=135.87 Aligned_cols=84 Identities=25% Similarity=0.505 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8765
No 72
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=136.19 Aligned_cols=86 Identities=20% Similarity=0.420 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999 99999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987653
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=139.67 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998764
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=138.92 Aligned_cols=84 Identities=25% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+. || |..|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~ 80 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-----FHDIMGKK 80 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-----CCBSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-----CCEECCeE
Confidence 3456899999999999999999999999999999999998899999999999999999999998 99 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.++.++.
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 9999998764
No 75
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=139.79 Aligned_cols=86 Identities=26% Similarity=0.297 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD-----MIKLYGK 85 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS-----SCBCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC-----CCeECCe
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 76
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=138.85 Aligned_cols=83 Identities=33% Similarity=0.462 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv-~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
.+++|||+|||+++++++|+++|+.||.|..| .|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-----GQYLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-----TCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCEEE
Confidence 45899999999999999999999999999999 999998899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 79 ~v~~a~~~~ 87 (96)
T 1x5t_A 79 TVSYAFKKD 87 (96)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccC
Confidence 999998764
No 77
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=1.1e-16 Score=152.92 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|.|++|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-----g~~i~g~~l~ 120 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELR 120 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT-----TCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 35799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.|+.++
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999765
No 78
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.4e-15 Score=140.85 Aligned_cols=86 Identities=27% Similarity=0.407 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGR 85 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.||.++.
T Consensus 86 ~l~V~~a~~~~ 96 (115)
T 2dgo_A 86 QIRTNWATRKP 96 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=135.20 Aligned_cols=83 Identities=30% Similarity=0.411 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecC
Q 002920 272 WAV 274 (865)
Q Consensus 272 ~a~ 274 (865)
|+.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=138.42 Aligned_cols=87 Identities=30% Similarity=0.440 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45577899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987653
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=135.73 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCC
Q 002920 271 DWAVP 275 (865)
Q Consensus 271 ~~a~~ 275 (865)
.|+.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99853
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=141.37 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-----GFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.++.++.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998763
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=3.3e-15 Score=138.22 Aligned_cols=88 Identities=32% Similarity=0.568 Sum_probs=82.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCCc
Q 002920 271 DWAVPKNI 278 (865)
Q Consensus 271 ~~a~~k~~ 278 (865)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 84
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=1.9e-16 Score=140.02 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
.+|||+|||+++|+++|+++|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 002920 275 PKN 277 (865)
Q Consensus 275 ~k~ 277 (865)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 85
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=138.38 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998765
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=2e-16 Score=180.11 Aligned_cols=157 Identities=13% Similarity=0.205 Sum_probs=110.0
Q ss_pred HHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceE--EEEECCHHHHHHHHHHhcCCccCCe---------------
Q 002920 118 VHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDAS--AVLYTTVKSACASVALLHQKEIKGG--------------- 180 (865)
Q Consensus 118 L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~A--fV~F~s~e~A~~Al~~lng~~i~G~--------------- 180 (865)
|..||..+|+|..|..+.... ..........|++ |+.|....++..++..++...+.+.
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p----~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~ 84 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLP----HEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVET 84 (437)
T ss_pred HHHhcCCCCCCcCCCCccccc----ccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998873321100 0000112223344 7777765554443332222111111
Q ss_pred --EEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh
Q 002920 181 --TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 258 (865)
Q Consensus 181 --~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 258 (865)
.+|.............++|||+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||..|
T Consensus 85 ~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 85 ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 111111111122345679999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCeeEEEEecCCCCc
Q 002920 259 NGQKFGKRPIAVDWAVPKNI 278 (865)
Q Consensus 259 ng~~i~gr~l~V~~a~~k~~ 278 (865)
||..|.|+.|.|.|+.+...
T Consensus 165 ng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCEECCEEEEEEEeCCCCC
Confidence 99999999999999987643
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=2.8e-16 Score=141.92 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC-ee
Q 002920 195 QKWKLIIRNIPF------KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-RP 267 (865)
Q Consensus 195 ~~~~l~V~nLp~------~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g-r~ 267 (865)
..++|||+|||+ .+++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|.+||..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEecCCCC
Q 002920 268 IAVDWAVPKN 277 (865)
Q Consensus 268 l~V~~a~~k~ 277 (865)
|.|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997654
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=140.27 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQPI 95 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-----TCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-----CCEECCcEE
Confidence 356899999999999999999999999999999999999899999999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.||.++
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 99999765
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=137.46 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s--------v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
.....++|||+|||.++++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|.+|+..||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~---- 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD---- 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC----
Confidence 3445689999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CCeEecCeEEEEEEcc
Q 002920 473 LGIFLKGRQLTVLKAL 488 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~A~ 488 (865)
|..|+|+.|.|.+|.
T Consensus 85 -g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 -GKEFSGNPIKVSFAT 99 (99)
T ss_dssp -TCBSSSSBCEEEECC
T ss_pred -CCEeCCcEEEEEecC
Confidence 999999999999973
No 90
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=137.75 Aligned_cols=86 Identities=28% Similarity=0.493 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 997654
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=136.20 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=2e-16 Score=139.87 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG--~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-----GSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-----CCeeCCEEEE
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.++.+..
T Consensus 77 V~~~~~~~ 84 (90)
T 3p5t_L 77 VTPSNKLE 84 (90)
T ss_dssp ECCC----
T ss_pred EEECCCCc
Confidence 99998753
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=140.11 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...+++|||+|||..+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~ 97 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQT 97 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999997653
No 94
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.7e-16 Score=137.24 Aligned_cols=84 Identities=32% Similarity=0.531 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEE-EEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
...++|||+|||+.+++++|+++|+.||.|..| .|+.++.+|.++|||||+|.+.++|+.||..|||..|.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98765
No 95
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.2e-16 Score=139.47 Aligned_cols=84 Identities=30% Similarity=0.530 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-----GKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-----TCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 356899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998764
No 96
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.9e-15 Score=132.44 Aligned_cols=80 Identities=30% Similarity=0.499 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+.. + +..|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-----~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K-----EHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S-----CEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C-----CCEECCEE
Confidence 34568999999999999999999999999999999999998999999999999999999999955 6 78899999
Q ss_pred EEEEEc
Q 002920 482 LTVLKA 487 (865)
Q Consensus 482 L~V~~A 487 (865)
|.|.+|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 97
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.5e-16 Score=139.67 Aligned_cols=85 Identities=26% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-----GAELDGRE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-----SCCBTTBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 3456899999999999999999999999999999999999899999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.+..
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999998653
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=139.29 Aligned_cols=86 Identities=22% Similarity=0.506 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997653
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=141.30 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++. |.++|||||+|.+.++|.+|+. ++ |..|+|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~-----~~~~~gr~ 80 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP-----GQKYKETD 80 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS-----CCCCTTTT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC-----CCEECCEE
Confidence 34468999999999999999999999999999999999986 9999999999999999999998 89 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.++...
T Consensus 81 l~V~~~~~~ 89 (103)
T 1s79_A 81 LLILFKDDY 89 (103)
T ss_dssp CEEEEHHHH
T ss_pred EEEEEchHH
Confidence 999998754
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=136.42 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 262 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~ 262 (865)
..+...++|||+|||+++++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..|+..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567899999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeEEEEecC
Q 002920 263 FGKRPIAVDWAV 274 (865)
Q Consensus 263 i~gr~l~V~~a~ 274 (865)
|.|+.|+|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999973
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=138.12 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC------CceeCC
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN------GQKFGK 265 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln------g~~i~g 265 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEecCCCCc
Q 002920 266 RPIAVDWAVPKNI 278 (865)
Q Consensus 266 r~l~V~~a~~k~~ 278 (865)
+.|.|.|+.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987653
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=1.7e-15 Score=137.73 Aligned_cols=84 Identities=25% Similarity=0.279 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-- 479 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G-- 479 (865)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|| |..|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~gg~ 85 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH-----GSQTMPGA 85 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS-----SCCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc-----CCccCCCC
Confidence 3457899999999999999999999999999999999997 79999999999999999999999999 999988
Q ss_pred -eEEEEEEccCch
Q 002920 480 -RQLTVLKALDKK 491 (865)
Q Consensus 480 -r~L~V~~A~~k~ 491 (865)
++|.|.||.++.
T Consensus 86 ~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 86 SSSLVVKFADTDK 98 (105)
T ss_dssp SSCCEEEESCSSC
T ss_pred CccEEEEECccCc
Confidence 999999998764
No 103
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=137.88 Aligned_cols=87 Identities=29% Similarity=0.476 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.|+.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998765
No 104
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=137.46 Aligned_cols=83 Identities=27% Similarity=0.338 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~---~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-----GHTVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-----TCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-----CCeeCCe
Confidence 357999999999999999999999999999999999876 56899999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.++.++.
T Consensus 79 ~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 KLEVRISERAT 89 (98)
T ss_dssp ECEEECSSCSS
T ss_pred EEEEEEccCCC
Confidence 99999998653
No 105
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=1.8e-15 Score=140.09 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||..||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987653
No 106
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.6e-16 Score=138.97 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.+.+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..|+.. +..|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~---~~~l~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQ 82 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTS---CCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccC---CceECCE
Confidence 4456789999999999999999999999999999998854 799999999999999999988611 4799999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 83 ~l~V~~A~~~~ 93 (105)
T 1sjq_A 83 PIYIQFSNHKE 93 (105)
T ss_dssp ECCBCCCSSSS
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=138.33 Aligned_cols=85 Identities=27% Similarity=0.580 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 108
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=138.42 Aligned_cols=86 Identities=28% Similarity=0.425 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec-CCCCCCCceEEEEeCCHHHHHHHHHHh-cCCCCCCeEec
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLK 478 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d-~~~g~~kG~aFV~F~s~e~A~~Al~~l-n~~~~~g~~l~ 478 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ..++.++|||||+|.+.++|.+|+..| | |..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH-----STHLY 85 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT-----CCBSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc-----CCeEC
Confidence 3445689999999999999999999999999999999998 789999999999999999999999999 9 99999
Q ss_pred CeEEEEEEccCch
Q 002920 479 GRQLTVLKALDKK 491 (865)
Q Consensus 479 Gr~L~V~~A~~k~ 491 (865)
|++|.|.||.++.
T Consensus 86 g~~l~v~~a~~~~ 98 (107)
T 2cph_A 86 GRRLVLEWADSEV 98 (107)
T ss_dssp SCBCEEEECCCCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998764
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.9e-15 Score=132.99 Aligned_cols=80 Identities=21% Similarity=0.459 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+++++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+ .|| |..|+|+.|.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-----g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-----ESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-----CCEECCcEEEE
Confidence 479999999999999999999999999999999999889999999999999999999999 999 99999999999
Q ss_pred EEccCc
Q 002920 485 LKALDK 490 (865)
Q Consensus 485 ~~A~~k 490 (865)
.++.+.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998753
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=136.68 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceE-EEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCee---
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW-NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP--- 267 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~--- 267 (865)
.....++|||+|||+.+++++|+++|+.||.|. +|.|++++.+|.++|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445678999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred -EEEEecCCCC
Q 002920 268 -IAVDWAVPKN 277 (865)
Q Consensus 268 -l~V~~a~~k~ 277 (865)
|+|.|+.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 111
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=3.4e-15 Score=135.76 Aligned_cols=86 Identities=23% Similarity=0.401 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC---eeE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK---RPI 268 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g---r~l 268 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999987 79999999999999999999999999999988 999
Q ss_pred EEEecCCCCc
Q 002920 269 AVDWAVPKNI 278 (865)
Q Consensus 269 ~V~~a~~k~~ 278 (865)
.|.|+.++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987653
No 112
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=133.16 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC-CCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR-PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~-~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.++|||+|||.++|+++|+++|+.||.|.+|.++.+..++. ++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-----GGQIDGQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-----CCeECCeEEE
Confidence 47999999999999999999999999999999999887665 89999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999764
No 113
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=136.42 Aligned_cols=87 Identities=34% Similarity=0.649 Sum_probs=81.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEccc-CCCCCccceEEEEECCHHHHHHHHHHh-CCceeCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~afV~F~~~e~A~~Al~~l-ng~~i~gr~l~ 269 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+ ..+|.++|||||+|.+.++|.+||..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999998 778999999999999999999999999 99999999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.|+.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987653
No 114
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=132.46 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCC-ccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+..++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999887666 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 115
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.5e-15 Score=137.19 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+|+++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN-----GVPLDGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 3456899999999999999999999999999999999998 99999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 002920 482 LTVLKAL 488 (865)
Q Consensus 482 L~V~~A~ 488 (865)
|.|.+|.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.7e-15 Score=149.68 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+++|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|| |..|.|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 346799999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 999998654
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=2.1e-15 Score=140.21 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 110 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN-----GFQVGTK 110 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC-----CCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 002920 481 QLTVLKAL 488 (865)
Q Consensus 481 ~L~V~~A~ 488 (865)
+|.|.|+.
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999973
No 118
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.1e-15 Score=134.80 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+++++|+++|+.|| |..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456778999999999999999999999997 999999999989999999999999999999999 79999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998765
No 119
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=134.68 Aligned_cols=82 Identities=27% Similarity=0.388 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++. +.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 86 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN-----GIRLYGRP 86 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC-----CCEECCCE
Confidence 34568999999999999999999999999999999999874 8899999999999999999999999 99999999
Q ss_pred EEEEEccC
Q 002920 482 LTVLKALD 489 (865)
Q Consensus 482 L~V~~A~~ 489 (865)
|.|.||..
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999853
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=5.3e-16 Score=143.63 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=91.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...++|||+|||+.+++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------------CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45789999999999999999999999999999999644 566999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc
Q 002920 179 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL 222 (865)
Q Consensus 179 G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~ 222 (865)
|+.|.|......... ++++...++++|.++|+.||.
T Consensus 74 g~~l~v~~a~~~~~~--------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 74 NRYLVVLYYNANRAF--------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SCBCEEEECCHHHHT--------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEEecCChhh--------hhhhHhHhHHHHHHHHHHhCC
Confidence 999998765321111 678888999999999999984
No 121
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=2.5e-15 Score=137.96 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 122
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=2.3e-15 Score=136.52 Aligned_cols=82 Identities=27% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++++++|+++|+.|| |..|.|+.+..++.++|||||+|.+.++|.+|+ .|| |..|+|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-----GALLGDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-----TCEETTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-----CCeECCeEE
Confidence 3468999999999999999999999997 999999999989999999999999999999999 999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.+|.++.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=136.68 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC-CCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~-g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+++|+++|+++|+.|| |..|.|+.++.+ +.++|||||+|.+.++|.+|| .|| |..|+|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-----TCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-----CCEeCCcE
Confidence 3458999999999999999999999999 999999999887 899999999999999999999 999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.++.
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=136.38 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV-SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~-sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+++++++|+++|+.||.|. +|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN-----GKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT-----TSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc-----CCccCCCC
Confidence 3568999999999999999999999999999 99999999899999999999999999999999999 99999999
Q ss_pred ----EEEEEccCc
Q 002920 482 ----LTVLKALDK 490 (865)
Q Consensus 482 ----L~V~~A~~k 490 (865)
|.|.||.+.
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998754
No 125
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=135.10 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCC---CCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567999999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.|+.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997764
No 126
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=4.7e-16 Score=176.95 Aligned_cols=83 Identities=17% Similarity=0.413 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| |..|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD-----GKKIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC-----CCEECCEEEE
Confidence 45799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.||.++.
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998653
No 127
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-15 Score=134.47 Aligned_cols=84 Identities=24% Similarity=0.448 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC-CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 999999999999999999999 89999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.++.++.
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998765
No 128
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=142.49 Aligned_cols=86 Identities=23% Similarity=0.445 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 112 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-----GFNILNK 112 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-----TEECSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCe
Confidence 44567899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.+|.++.
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.9e-15 Score=129.59 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
.+..|||+||++.+|+++|+++|.+||+|.+|+++. ++|||||+|.+.++|.+|++.|| |..|+||+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln-----~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALN-----NCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhc-----CCEECCcEEE
Confidence 356899999999999999999999999999999864 69999999999999999999999 9999999999
Q ss_pred EEEcc
Q 002920 484 VLKAL 488 (865)
Q Consensus 484 V~~A~ 488 (865)
|.+|.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99993
No 130
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=139.03 Aligned_cols=86 Identities=26% Similarity=0.308 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--------SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~--------sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
.....++|||+|||+++|+++|+++|+.||.|. .|.|+.++.++.++|||||+|.+.++|.+||..||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~---- 86 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD---- 86 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT----
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC----
Confidence 344578999999999999999999999999999 59999998899999999999999999999999999
Q ss_pred CCeEecCeEEEEEEccCch
Q 002920 473 LGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~A~~k~ 491 (865)
|..|.|++|.|.++.++.
T Consensus 87 -g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 87 -GKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp -TCEETTEECEEECSSCCC
T ss_pred -CCccCCCEEEEEECCCCC
Confidence 999999999999998764
No 131
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=148.04 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG--~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+|.++|||||+|.+.++|.+||..|| |..|+|+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-----g~~~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-----GKVLNGEK 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-----TCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 457999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.++.
T Consensus 129 l~V~~a~~~~ 138 (156)
T 3n9u_C 129 VDVRPATRQN 138 (156)
T ss_dssp CEEEECCHHH
T ss_pred eEEEEcCCCc
Confidence 9999998764
No 132
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=134.88 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457889999999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987653
No 133
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=136.43 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 345789999999999999999999999999999999987 78899999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999998764
No 134
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=140.10 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|| |..|+|+.|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-----GQRLLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-----TEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-----CCEeCCeEEE
Confidence 4589999999999999999999999999999999999988999999999999999999999 999 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.|+.++.
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99987654
No 135
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=4e-15 Score=130.43 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 58999999999999
Q ss_pred ec
Q 002920 272 WA 273 (865)
Q Consensus 272 ~a 273 (865)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 136
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=1.7e-15 Score=137.99 Aligned_cols=85 Identities=27% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe---c
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL---K 478 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l---~ 478 (865)
....++|||+|||.++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..|| |..+ .
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~~ 84 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-----EQKTLPGM 84 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-----TTCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCcccCCC
Confidence 4456899999999999999999999999999999999999899999999999999999999999999 8887 8
Q ss_pred CeEEEEEEccCch
Q 002920 479 GRQLTVLKALDKK 491 (865)
Q Consensus 479 Gr~L~V~~A~~k~ 491 (865)
|++|.|.||.++.
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 9999999998754
No 137
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=137.80 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|+ + .|.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-----~-~~~g~ 86 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-----P-IIDGR 86 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-----C-EETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-----C-cCCCE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 8 89999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
+|.|.||.+.
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 9999999754
No 138
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-15 Score=133.34 Aligned_cols=83 Identities=24% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .++|||||+|.+.++|.+|+..|| |..|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMN-----GRKILGKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhC-----CCCcCCCe
Confidence 34568999999999999999999999999999999998853 368999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 9999998764
No 139
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=133.96 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCe--EecC
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI--FLKG 479 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~--~l~G 479 (865)
..++++|||+|||+++|+++|+++|++||.|.+|.++. .+|||||+|.+.++|.+|+..|+ |. .|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln-----~~~~~i~G 86 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAA-----DNQIYIAG 86 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHH-----HSCEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhc-----CCCceeCC
Confidence 34578999999999999999999999999999998873 47999999999999999999999 54 5899
Q ss_pred eEEEEEEccCc
Q 002920 480 RQLTVLKALDK 490 (865)
Q Consensus 480 r~L~V~~A~~k 490 (865)
++|.|.|+.++
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999999765
No 140
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2.5e-15 Score=136.89 Aligned_cols=86 Identities=27% Similarity=0.408 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee---CCeeE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPI 268 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i---~gr~l 268 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456778999999999999999999999999999999999998999999999999999999999999999998 89999
Q ss_pred EEEecCCCC
Q 002920 269 AVDWAVPKN 277 (865)
Q Consensus 269 ~V~~a~~k~ 277 (865)
.|.|+.++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998765
No 141
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=133.06 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 404 LQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~----e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
.+++|||+|||+.+++++|+ ++|++||.|.+|.|+.+..+ +|||||+|.+.++|.+|+..|| |..|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~-----g~~~~g 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH-----RYKIGS 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT-----TEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC-----CCEECC
Confidence 46799999999999999999 99999999999999988754 8999999999999999999999 999999
Q ss_pred eEEEEEEccCc
Q 002920 480 RQLTVLKALDK 490 (865)
Q Consensus 480 r~L~V~~A~~k 490 (865)
++|.|.+|.++
T Consensus 80 r~l~V~~a~~~ 90 (96)
T 2dgx_A 80 KKILVSLATGA 90 (96)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEEcCCC
Confidence 99999999765
No 142
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=1.5e-15 Score=143.72 Aligned_cols=85 Identities=22% Similarity=0.417 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
...+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-----g~~i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGR 116 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
+|.|.|+.++
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999999765
No 143
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.5e-15 Score=133.04 Aligned_cols=84 Identities=23% Similarity=0.498 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 83 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH-----GTVVEGR 83 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 344568999999999999999999999999999999998853 389999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cq3_A 84 KIEVNNATARV 94 (103)
T ss_dssp ECEEEECCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=135.49 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCeeCCeEE
Confidence 345899999999999999999999999999998889988899999999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.++..+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 145
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=2.7e-15 Score=131.96 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 002920 196 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 275 (865)
Q Consensus 196 ~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~ 275 (865)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 8999999999999999976
Q ss_pred C
Q 002920 276 K 276 (865)
Q Consensus 276 k 276 (865)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 146
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=132.54 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCee
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 267 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~ 267 (865)
.....++|||+|||+.+++++|+ ++|+.||.|.+|.|+.++.+ +|||||+|.+.++|.+||..|||..|.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999998754 899999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 002920 268 IAVDWAVPKN 277 (865)
Q Consensus 268 l~V~~a~~k~ 277 (865)
|.|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 147
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.9e-15 Score=136.63 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=81.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceE--------EEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
.....++|||+|||+.+|+++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345778999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCc
Q 002920 264 GKRPIAVDWAVPKNI 278 (865)
Q Consensus 264 ~gr~l~V~~a~~k~~ 278 (865)
.|+.|.|.|+.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987653
No 148
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=137.69 Aligned_cols=84 Identities=35% Similarity=0.553 Sum_probs=79.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|| |..|+|+.|.|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 82 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-----GREFSGRALRV 82 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-----SBSCSSSCBEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEEE
Confidence 4799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccCchhh
Q 002920 485 LKALDKKLA 493 (865)
Q Consensus 485 ~~A~~k~~~ 493 (865)
.||.++...
T Consensus 83 ~~a~~~~~~ 91 (104)
T 1p1t_A 83 DNAASEKNK 91 (104)
T ss_dssp EETTCTTHH
T ss_pred EeCCCccch
Confidence 999876543
No 149
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.3e-15 Score=142.49 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=81.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 150
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=139.35 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||.++|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN-----GKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS-----SCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 345799999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999998653
No 151
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=136.99 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+++|+++|+++|+.||.|.+|.|++++. |.++|||||+|.+.++|..||. ++|..|.|+.|.|.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4567999999999999999999999999999999999987 9999999999999999999999 8999999999999997
Q ss_pred CC
Q 002920 274 VP 275 (865)
Q Consensus 274 ~~ 275 (865)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 152
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=137.42 Aligned_cols=85 Identities=26% Similarity=0.403 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+++|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
+.++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 153
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3.7e-15 Score=136.75 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+.+..+|.++|||||+|.+.++|.+|+..+ +..|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~------~~~l~g~ 94 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS------RHELDSK 94 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS------CEEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC------CCcCCCE
Confidence 3445689999999999999999999999999999999999889999999999999999999999875 5899999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.+|.++.
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 154
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=137.43 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. + +..|+|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-----~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-----PHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-----SEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-----CCeECCEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999 9 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.++.
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 155
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.4e-15 Score=132.71 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||. + +..|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~-----~~~~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q-----RHMIDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S-----CEEETTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c-----CCeeCCe
Confidence 34456899999999999999999999999999999999998899999999999999999999998 4 6899999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.|+.++.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999998764
No 156
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.3e-15 Score=138.92 Aligned_cols=83 Identities=27% Similarity=0.409 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q 002920 272 WAV 274 (865)
Q Consensus 272 ~a~ 274 (865)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 157
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=135.65 Aligned_cols=82 Identities=21% Similarity=0.382 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC--CceeCCeeE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPI 268 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln--g~~i~gr~l 268 (865)
+.+...++|||+|||+.+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|+..|+ +..|.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 46678899999999999999999999999999999999874 7999999999999999999886 478999999
Q ss_pred EEEecCCCCc
Q 002920 269 AVDWAVPKNI 278 (865)
Q Consensus 269 ~V~~a~~k~~ 278 (865)
+|.|+.++..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999987653
No 158
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=2.5e-15 Score=141.47 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...+++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 93 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQP 93 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCeE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 94 l~v~~a~~~~ 103 (126)
T 3ex7_B 94 ISVDWCFVRG 103 (126)
T ss_dssp CEEEESEESS
T ss_pred EEEEEecCCC
Confidence 9999997654
No 159
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=9.4e-16 Score=138.38 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-CCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~-~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
....++|||+|||+++++++|+++|+.|| |.+|.|+.+. .+|.++|||||+|.+.++|.+|+ .|| |..|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-----g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-----TCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-----CCEECCe
Confidence 44578999999999999999999999999 9999999987 58999999999999999999999 999 9999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
.|.|.+|.++
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999999765
No 160
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=6.4e-15 Score=134.43 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45677899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecC
Q 002920 272 WAV 274 (865)
Q Consensus 272 ~a~ 274 (865)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 161
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.6e-15 Score=135.22 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-----CCeECCcEEE
Confidence 35799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEcc
Q 002920 484 VLKAL 488 (865)
Q Consensus 484 V~~A~ 488 (865)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99875
No 162
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=132.45 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999875 8999999999999999999999999999999999999
Q ss_pred ecC
Q 002920 272 WAV 274 (865)
Q Consensus 272 ~a~ 274 (865)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 975
No 163
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=137.45 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE-ecC
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSA-FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF-LKG 479 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~-fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~-l~G 479 (865)
....++|||+|||+++|+++|+++|+. ||.|.+|.|+.+. ++.++|||||+|.+.++|.+|+..|| |.. |+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ-----GAVGLGS 79 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT-----TCCSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc-----CCcccCC
Confidence 345689999999999999999999999 9999999999998 99999999999999999999999999 999 999
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
++|.|.+|.++.
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999997664
No 164
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.5e-15 Score=129.25 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=72.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
+|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|++|+. |||..|.|++|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999985
No 165
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=134.19 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 002920 273 AVPK 276 (865)
Q Consensus 273 a~~k 276 (865)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 166
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=130.15 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++++++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+|+. || |..|+|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~-----g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN-----REYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC-----SEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC-----CceeCCcEE
Confidence 346899999999999999999999999 9999999999 689999999999999999999999 99 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.+|.++
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99999765
No 167
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=6.5e-15 Score=130.41 Aligned_cols=84 Identities=31% Similarity=0.429 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 78899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 997764
No 168
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-16 Score=133.98 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
++++|||+|||+++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-----HHTCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-----CCeEeeEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999 9999999998
Q ss_pred EEEcc
Q 002920 484 VLKAL 488 (865)
Q Consensus 484 V~~A~ 488 (865)
|.++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 87753
No 169
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=135.05 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 455778999999999999999999999999999999999998999999999999999999999999998 8999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.3e-15 Score=129.65 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 486 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~ 486 (865)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ || |..|+|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-----~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-----FHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-----CCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-----CCEECCEEEEEEe
Confidence 49999999999999999999999999999999998899999999999999999999997 99 9999999999998
Q ss_pred c
Q 002920 487 A 487 (865)
Q Consensus 487 A 487 (865)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 171
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=132.60 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999988775
Q ss_pred C
Q 002920 274 V 274 (865)
Q Consensus 274 ~ 274 (865)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=135.24 Aligned_cols=92 Identities=35% Similarity=0.489 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCC-CCCCeEecC
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT-SGLGIFLKG 479 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~-~~~g~~l~G 479 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||.. ...|..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3445789999999999999999999999999999999999989999999999999999999999999610 111588999
Q ss_pred eEEEEEEccCchh
Q 002920 480 RQLTVLKALDKKL 492 (865)
Q Consensus 480 r~L~V~~A~~k~~ 492 (865)
++|.|.|+.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987643
No 173
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=146.26 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
..++|||+|||+++|+++|+++|+.|| .|.+|.|+.|+.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97653
No 174
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=4.1e-15 Score=137.61 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+++|||+|||+.+|+++|+++|+.||.|.+|.|+.+ +.++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 77 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLS-----GFNVSNRYL 77 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHT-----TCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEE
Confidence 35689999999999999999999999999999999865 4569999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.|+.++
T Consensus 78 ~v~~a~~~ 85 (115)
T 3lqv_A 78 VVLYYNAN 85 (115)
T ss_dssp EEEECCHH
T ss_pred EEEEecCC
Confidence 99998754
No 175
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=135.29 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcC-CCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce-eCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~-i~gr~l~ 269 (865)
.....++|||+|||+++|+++|+++|+. ||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||.. |.|++|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977653
No 176
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=130.81 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+|+++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456778999999999999999999999999999999998763 38999999999999999999999999999999999
Q ss_pred EecCCCCc
Q 002920 271 DWAVPKNI 278 (865)
Q Consensus 271 ~~a~~k~~ 278 (865)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987653
No 177
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=136.16 Aligned_cols=84 Identities=31% Similarity=0.550 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCc
Q 002920 275 PKNI 278 (865)
Q Consensus 275 ~k~~ 278 (865)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7653
No 178
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=144.30 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCe----
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI---- 475 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s--v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~---- 475 (865)
....++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+. +|.+|+..|| |.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-----g~~~~~ 93 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-----ALHPPL 93 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-----TCCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-----CCCCCc
Confidence 345689999999999999999999999999977 99999999999999999999999 9999999999 98
Q ss_pred EecCeEEEEEEccCc
Q 002920 476 FLKGRQLTVLKALDK 490 (865)
Q Consensus 476 ~l~Gr~L~V~~A~~k 490 (865)
.|+|++|.|.||.++
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 999999999999875
No 179
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=4.5e-15 Score=131.47 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||.++++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN-----GMKLSGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT-----TCCBTTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 35689999999999999999999999999999999874 78899999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.|+.+..
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999997653
No 180
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=138.14 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEV-VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V-~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. | |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~-----~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-H-----RKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-C-----SEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-C-----CCccCCeE
Confidence 346899999999999999999999999999 889999998 999999999999999999999987 9 99999999
Q ss_pred EEEEEccCchh
Q 002920 482 LTVLKALDKKL 492 (865)
Q Consensus 482 L~V~~A~~k~~ 492 (865)
|.|.+|.++..
T Consensus 86 i~v~~a~~~~~ 96 (114)
T 2cpy_A 86 AFVHVVTLEDM 96 (114)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999976643
No 181
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=136.97 Aligned_cols=82 Identities=23% Similarity=0.483 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. + +..|+|+.|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-----PHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-----SEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-----CcEECCEEEE
Confidence 357999999999999999999999999999999999988999999999999999999999988 8 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.+|.++.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99998764
No 182
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.5e-15 Score=135.19 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 85 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN-----GQLLFDRP 85 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC-----CCEeCCCE
Confidence 3456899999999999999999999999999999999987 68999999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.++...
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998753
No 183
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=5.7e-15 Score=139.01 Aligned_cols=86 Identities=27% Similarity=0.573 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 997664
No 184
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=131.12 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345678999999999999999999999999999999999853 378999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998765
No 185
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=8.9e-15 Score=140.15 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
+.++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987653
No 186
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.5e-15 Score=132.21 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..++++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+.. +..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAV---TPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC---CceECCcE
Confidence 345689999999999999999999999999999987743 799999999999999999987411 68899999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||..+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998654
No 187
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-15 Score=136.50 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeecCCCC---CCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQVTK---RPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 476 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~---e~Fs~fG~V~sv~i~~d~~~g---~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~ 476 (865)
...++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+|+..|| |..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-----g~~ 87 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-----NVV 87 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-----TEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-----CCE
Confidence 346799999999999999999 999999999999999887644 566999999999999999999999 999
Q ss_pred ecCeEEEEEEccCch
Q 002920 477 LKGRQLTVLKALDKK 491 (865)
Q Consensus 477 l~Gr~L~V~~A~~k~ 491 (865)
|+|++|.|.||.++.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999998764
No 188
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=128.82 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++++++|+++|+.| .|..|.|+++ .+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999998 689999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997653
No 189
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=134.50 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987653
No 190
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=135.53 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
++|||+|||.++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|+..|| |..|+|+.|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD-----GKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH-----HSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC-----CCeECCcEEEEE
Confidence 48999999999999999999999999999998866 68999999999999999999999 999999999999
Q ss_pred EccCch
Q 002920 486 KALDKK 491 (865)
Q Consensus 486 ~A~~k~ 491 (865)
|+.++.
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 998764
No 191
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=2.9e-15 Score=133.55 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999898988888999999999999999999999999999999999999998
Q ss_pred cC
Q 002920 273 AV 274 (865)
Q Consensus 273 a~ 274 (865)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 192
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=131.31 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCce--eCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~--i~gr~l~ 269 (865)
...++++|||+|||+.+|+++|+++|++||.|.+|.+++ .+|||||+|.+.++|..|+..|++.. |.|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445778999999999999999999999999999999975 47999999999999999999999875 7899999
Q ss_pred EEecCCCC
Q 002920 270 VDWAVPKN 277 (865)
Q Consensus 270 V~~a~~k~ 277 (865)
|.|+.++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99997654
No 193
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=8.8e-15 Score=134.22 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||..+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999975 699999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 194
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=9.2e-15 Score=137.23 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...+++|||+|||..+++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~ 105 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGRP 105 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT-----TEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 3456899999999999999999999999999999999998 89999999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.||.+.
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 999999765
No 195
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=134.91 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCe
Q 002920 402 DELQNTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 475 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~v------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~ 475 (865)
...+++|||+|||+.+ |+++|+++|++||.|.+|.|+ ..+|.++|||||+|.+.++|.+|+..|| |.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~-----g~ 84 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GY 84 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS-----SE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC-----Cc
Confidence 3446899999999999 789999999999999999887 4688999999999999999999999999 99
Q ss_pred EecCe-EEEEEEccCc
Q 002920 476 FLKGR-QLTVLKALDK 490 (865)
Q Consensus 476 ~l~Gr-~L~V~~A~~k 490 (865)
.|+|+ +|.|.+|.+.
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 99998 9999998754
No 196
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=134.95 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccC-CCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.....++|||+|||+++++++|+++|+.|| |.+|.|+.+. .+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999988 68999999999999999999999 79999999999999
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999765
No 197
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=6.8e-15 Score=127.25 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
..+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999999965 6899999999999999999999999999999999998
Q ss_pred C
Q 002920 274 V 274 (865)
Q Consensus 274 ~ 274 (865)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 198
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=134.77 Aligned_cols=83 Identities=23% Similarity=0.532 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||.++|+++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLH-----GTVVEGR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34457899999999999999999999999999999999885 3489999999999999999999999 9999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
+|.|.+|.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999765
No 199
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=131.46 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 200
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=135.46 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HhhcCCCceEEEEEcccCCCC---CccceEEEEECCHHHHHHHHHHhCCceeCCe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTDTG---LSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~---~~F~~~G~I~~v~i~~d~~tg---~~kG~afV~F~~~e~A~~Al~~lng~~i~gr 266 (865)
....++|||+|||+.+++++|+ ++|+.||.|..|.|+.+..++ .++|||||+|.+.++|++||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457799999999999999999 999999999999999887654 4669999999999999999999999999999
Q ss_pred eEEEEecCCCC
Q 002920 267 PIAVDWAVPKN 277 (865)
Q Consensus 267 ~l~V~~a~~k~ 277 (865)
+|.|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 201
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=138.73 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+.+|+++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-----EEEETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEc
Q 002920 481 QLTVLKA 487 (865)
Q Consensus 481 ~L~V~~A 487 (865)
+|.|.||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999986
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=135.47 Aligned_cols=82 Identities=26% Similarity=0.396 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999989999999999999999999999 899999999999999997
Q ss_pred CCC
Q 002920 275 PKN 277 (865)
Q Consensus 275 ~k~ 277 (865)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=131.24 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 89 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRD-----GYDYDGY 89 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCe
Confidence 344568999999999999999999999999999998864 45689999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.|+.++.
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999997653
No 204
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.2e-14 Score=142.16 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| |..|+|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-----GTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 456899999999999999999999999999999999999899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.+..
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 205
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=134.08 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~-~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
.++++|||+|||+ ++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..||.. +..|.|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTT---PALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCC---CceECCcE
Confidence 3578999999999 9999999999999999999998754 589999999999999999999811 34699999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||..+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998653
No 206
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=133.66 Aligned_cols=84 Identities=21% Similarity=0.440 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe---
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--- 477 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l--- 477 (865)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~~ 94 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN-----GKFIKTP 94 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB-----TCCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEEcCC
Confidence 34456899999999999999999999999999999999998 89999999999999999999999999 8888
Q ss_pred -----cCeEEEEEEccCc
Q 002920 478 -----KGRQLTVLKALDK 490 (865)
Q Consensus 478 -----~Gr~L~V~~A~~k 490 (865)
.+++|.|.||.++
T Consensus 95 ~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 95 PGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TTSCCCSSCBEEEECCCS
T ss_pred ccccCCCCceeEEccCCC
Confidence 6888999999764
No 207
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=128.17 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999988 9999999999987
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=135.14 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987653
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-14 Score=129.60 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 5789999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987653
No 210
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=8.7e-15 Score=136.28 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~---V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+||. || |..|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD-----RESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT-----TEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCeECC
Confidence 45689999999999999999999999999 89999999975 9999999999999999999999 99 999999
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
|.|.|.++..++
T Consensus 88 r~i~V~~a~~~~ 99 (118)
T 2db1_A 88 RYIEVFKSHRTE 99 (118)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999986553
No 211
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=138.17 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 402 DELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~----e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
..++++|||+|||+.+++++|+ ++|++||.|..|.+. .++.++|||||+|.+.++|..|+..|| |..|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~ln-----g~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQ-----GYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHST-----TCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHC-----CCEe
Confidence 4457899999999999999876 799999999998764 367899999999999999999999999 9999
Q ss_pred cCeEEEEEEccCchh
Q 002920 478 KGRQLTVLKALDKKL 492 (865)
Q Consensus 478 ~Gr~L~V~~A~~k~~ 492 (865)
.|++|.|.||..+..
T Consensus 98 ~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 98 QGNPLVITFSETPQS 112 (127)
T ss_dssp TTSCCEEEECCCCCH
T ss_pred CCCEEEEEEccCcch
Confidence 999999999987654
No 212
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.1e-15 Score=135.04 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEe-ecCCCCCCCceEEEEeCCHHHHHHHHHHh-cCCCCCC-eEecC
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPV-LHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLG-IFLKG 479 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~-V~sv~i~-~d~~~g~~kG~aFV~F~s~e~A~~Al~~l-n~~~~~g-~~l~G 479 (865)
..++|||+|||+++|+++|+++|+.||. |.+|.++ .+..+|.++|||||+|.+.++|.+|+..| + | ..|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-----g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP-----GRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTT-----CCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhC-----CCceecC
Confidence 4689999999999999999999999998 9999988 78888899999999999999999999999 5 6 89999
Q ss_pred eEEEEEEccCchh
Q 002920 480 RQLTVLKALDKKL 492 (865)
Q Consensus 480 r~L~V~~A~~k~~ 492 (865)
+.|.|.||.++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999987643
No 213
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.3e-15 Score=134.38 Aligned_cols=80 Identities=31% Similarity=0.530 Sum_probs=74.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.+ |.+|+..|| |..|+|++|.|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~-----g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD-----NTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC-----SSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC-----CCEECCeEEEEE
Confidence 58999999999999999999999999999999999989999999999999999 999999999 999999999999
Q ss_pred EccCch
Q 002920 486 KALDKK 491 (865)
Q Consensus 486 ~A~~k~ 491 (865)
+|.+..
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 998653
No 214
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.4e-15 Score=136.57 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+..|+.. +..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~---~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHH---CCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccC---CceECCeE
Confidence 345689999999999999999999999999999998864 799999999999999999998711 36899999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 99 l~V~~a~~k~ 108 (119)
T 2ad9_A 99 IYIQFSNHKE 108 (119)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 215
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=133.42 Aligned_cols=76 Identities=30% Similarity=0.460 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 7899999999999999999999999999999999999765
Q ss_pred C
Q 002920 277 N 277 (865)
Q Consensus 277 ~ 277 (865)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1e-14 Score=136.88 Aligned_cols=80 Identities=20% Similarity=0.463 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|| |..|+|+.|.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-----ETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 479999999999999999999999999999999999889999999999999999999999 899 99999999999
Q ss_pred EEccCc
Q 002920 485 LKALDK 490 (865)
Q Consensus 485 ~~A~~k 490 (865)
.|+.+.
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998754
No 217
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.55 E-value=1.8e-14 Score=140.94 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998754
No 218
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-15 Score=127.72 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 485 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~ 485 (865)
++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..++ ..|+|++|.|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~------~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR------HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT------CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC------CccCCEEEEEE
Confidence 479999999999999999999999999999999998899999999999999999999999886 78999999999
Q ss_pred Ecc
Q 002920 486 KAL 488 (865)
Q Consensus 486 ~A~ 488 (865)
+|.
T Consensus 75 ~a~ 77 (77)
T 1uaw_A 75 VAF 77 (77)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 219
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-15 Score=139.97 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. || |..|+|+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-----KQYMGNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-----SBCSTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-----CCeECCcE
Confidence 3456899999999999999999999999999987677777799999999999999999999999 99 99999999
Q ss_pred EEEEEccCchh
Q 002920 482 LTVLKALDKKL 492 (865)
Q Consensus 482 L~V~~A~~k~~ 492 (865)
|.|.+|..+..
T Consensus 96 i~V~~a~~~~~ 106 (124)
T 1wel_A 96 IQVHPITKKGM 106 (124)
T ss_dssp BEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999987653
No 220
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.9e-14 Score=127.84 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh--CCceeCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--ng~~i~gr~l~ 269 (865)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998763 799999999999999999977 46789999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.|+.++..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987653
No 221
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=7e-15 Score=140.11 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~---V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. || |..|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~-----g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD-----RESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT-----EEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCEEC
Confidence 345689999999999999999999999999 89999999986 9999999999999999999999 99 99999
Q ss_pred CeEEEEEEccCch
Q 002920 479 GRQLTVLKALDKK 491 (865)
Q Consensus 479 Gr~L~V~~A~~k~ 491 (865)
||.|.|.++.+++
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 9999999987553
No 222
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=132.81 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee--------C
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--------G 264 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i--------~ 264 (865)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeeEEEEecCCC
Q 002920 265 KRPIAVDWAVPK 276 (865)
Q Consensus 265 gr~l~V~~a~~k 276 (865)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999764
No 223
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=130.72 Aligned_cols=83 Identities=29% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEE-EEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
....++|||+|||+.+|+++|+++|+.||.|.. |.|+.+ .+|+++|||||+|.+.++|++||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 356789999999999999999999999999987 889888 6899999999999999999999996 9999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 224
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=132.42 Aligned_cols=83 Identities=23% Similarity=0.428 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCC------CHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCe
Q 002920 193 KTQKWKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr 266 (865)
....++|||+|||+.+ |+++|+++|+.||.|.+|.|+ ..+|.++|||||+|.+.++|..||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 789999999999999999998 35799999999999999999999999999999998
Q ss_pred -eEEEEecCCCC
Q 002920 267 -PIAVDWAVPKN 277 (865)
Q Consensus 267 -~l~V~~a~~k~ 277 (865)
+|.|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987554
No 225
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=141.87 Aligned_cols=84 Identities=20% Similarity=0.401 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEE--EEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc----eeCCe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGKR 266 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~----~i~gr 266 (865)
....++|||+|||+++|+++|+++|+.||.|.. |+|++++.+|.++|||||+|.+. +|.+||..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEecCCCC
Q 002920 267 PIAVDWAVPKN 277 (865)
Q Consensus 267 ~l~V~~a~~k~ 277 (865)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997754
No 226
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=134.34 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457999999999999999999999999999999999998999999999999999999999997 9999999999999998
Q ss_pred CCCc
Q 002920 275 PKNI 278 (865)
Q Consensus 275 ~k~~ 278 (865)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7753
No 227
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=1.8e-15 Score=133.51 Aligned_cols=80 Identities=31% Similarity=0.511 Sum_probs=74.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
++|||+|||+.+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.+ |..|+..|||..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999765
Q ss_pred C
Q 002920 277 N 277 (865)
Q Consensus 277 ~ 277 (865)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 228
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=132.13 Aligned_cols=85 Identities=32% Similarity=0.425 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEc-ccCCCCCccceEEEEECCHHHHHHHHHHhC--CceeCCeeEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIP-HNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIA 269 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i~-~d~~tg~~kG~afV~F~~~e~A~~Al~~ln--g~~i~gr~l~ 269 (865)
...++|||+|||+.+|+++|+++|+.||. |..|.|+ .+..+|.++|||||+|.+.++|..|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 229
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=135.37 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCce-EEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV-WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.....++|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 899999999999999999999996 999999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 230
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=132.57 Aligned_cols=84 Identities=35% Similarity=0.531 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 191 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
......++|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=131.91 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|+.||.| .|.|+.++ +|+++|||||+|.+.++|++||. +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999955 89999997 89999999999999999999996 79999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 986543
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.3e-14 Score=136.04 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred CCC
Q 002920 275 PKN 277 (865)
Q Consensus 275 ~k~ 277 (865)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 233
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=6.7e-15 Score=140.25 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
....++|||+|||+++|+++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|++||. ||+..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 88999999986 9999999999999999999999 999999999999
Q ss_pred EEecCCC
Q 002920 270 VDWAVPK 276 (865)
Q Consensus 270 V~~a~~k 276 (865)
|.++.+.
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 234
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=137.99 Aligned_cols=82 Identities=30% Similarity=0.446 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ec
Q 002920 272 WA 273 (865)
Q Consensus 272 ~a 273 (865)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 235
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.9e-15 Score=132.66 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s-v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+++|+++|+++|+.||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. | +..|+||.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~-----~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H-----KERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T-----TCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C-----cchhCCcE
Confidence 34689999999999999999999999999998 888888 6899999999999999999999987 8 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.++..+
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999998654
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.9e-15 Score=133.25 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|+.||. +.|.|++++ +++++|||||+|.+.++|.+|| .+| +..|+||.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKD-----KANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTS-----SCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhC-----CCeECCcEE
Confidence 34689999999999999999999999995 499999997 8999999999999999999999 579 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.++...
T Consensus 85 ~V~~~~~~ 92 (102)
T 1wez_A 85 ELFLNSTA 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99998754
No 237
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=129.57 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.||.| .++.+ .++.++|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-----KREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS-----SEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC-----CCEeCCeE
Confidence 3456899999999999999999999999987 45666 588999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.|+.++.
T Consensus 83 l~v~~a~~~~ 92 (101)
T 2fc9_A 83 IRLELQGPRG 92 (101)
T ss_dssp EEEEECSSCC
T ss_pred EEEEEcCCCC
Confidence 9999998763
No 238
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-14 Score=129.95 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999664 5689999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998764
No 239
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=130.36 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc--eeCCeeEE
Q 002920 193 KTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~--~i~gr~l~ 269 (865)
..+.++|||+|||+ .+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|..||..||+. .|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999864 589999999999999999998864 59999999
Q ss_pred EEecCCCC
Q 002920 270 VDWAVPKN 277 (865)
Q Consensus 270 V~~a~~k~ 277 (865)
|.|+..+.
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 240
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-14 Score=127.50 Aligned_cols=82 Identities=24% Similarity=0.527 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.| .++.+ .+|.++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999987 56666 578999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-15 Score=136.17 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..+.++|||+|||+++|+++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN-----GYKLYGKI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST-----TCBCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 3457899999999999999999999999999443333333378899999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 242
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.4e-14 Score=129.98 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC---
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--- 479 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--- 479 (865)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|.+||..|| |..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEG 80 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSS-----SEEEECTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHC-----cCCccCCcC
Confidence 34689999999999999999999999999999998755 899999999999999999999 999999
Q ss_pred --eEEEEEEccCch
Q 002920 480 --RQLTVLKALDKK 491 (865)
Q Consensus 480 --r~L~V~~A~~k~ 491 (865)
++|.|.+|.++.
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999998764
No 243
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=132.00 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC--ceeCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng--~~i~gr~l~ 269 (865)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999874 79999999999999999998874 689999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.|+.++..
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 244
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=133.39 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 401 EDELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~-vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
...++++|||+|||++ +|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|..|+..|+.. +..|.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~---~~~l~G 91 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKK---ALWFQG 91 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHS---CCCSSS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccC---CceECC
Confidence 3456789999999998 99999999999999999998863 5899999999999999999988611 467999
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
|+|.|.||..+.
T Consensus 92 r~l~V~~a~~~~ 103 (112)
T 1x4f_A 92 RCVKVDLSEKYK 103 (112)
T ss_dssp SCCEEEEECSCS
T ss_pred EEEEEEECcccc
Confidence 999999997654
No 245
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=132.06 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+++|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|.+|| .|| +..|+||.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRN-----RMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTT-----TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 4799999999999999999999999 899999999974 999999999999999999999 799 99999999999
Q ss_pred EEccCc
Q 002920 485 LKALDK 490 (865)
Q Consensus 485 ~~A~~k 490 (865)
..+..+
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 988654
No 246
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=131.37 Aligned_cols=80 Identities=13% Similarity=0.274 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
.++++|||+|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|+..|+.. +..|.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~---~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADV---PVYIAGQQA 83 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHS---CCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccC---CceECCEEE
Confidence 4568999999999999999999999999999998764 3799999999999999999998711 356999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.|+..+.
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999998653
No 247
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=128.60 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCc--eeCCeeEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPIAV 270 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~--~i~gr~l~V 270 (865)
..+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|++. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998762 799999999999999999988765 489999999
Q ss_pred EecCCCCc
Q 002920 271 DWAVPKNI 278 (865)
Q Consensus 271 ~~a~~k~~ 278 (865)
.|+.++..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987653
No 248
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3e-15 Score=135.19 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ || |..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-----g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-----GLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-----GCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-----CcEECCcEE
Confidence 34689999999999999999999999999988 677777789999999999999999999998 99 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.+|.++.
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 249
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=2e-14 Score=131.95 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG-~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+++++++|+++|+.|| .|..+.|+. +.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~ln-----g~~l~Gr~ 96 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLN-----NIEFRGSV 96 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 3467999999999999999999999999 899998753 3479999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.++...
T Consensus 97 i~V~~a~~~ 105 (111)
T 2jvr_A 97 ITVERDDNP 105 (111)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 999998754
No 250
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=135.12 Aligned_cols=83 Identities=16% Similarity=0.335 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
..+.++|||+|||+.+++++|+ ++|+.||.|.+|.+.. +|.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 7999999999998864 57899999999999999999999999999999999
Q ss_pred EEEecCCCCc
Q 002920 269 AVDWAVPKNI 278 (865)
Q Consensus 269 ~V~~a~~k~~ 278 (865)
.|.|+.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 251
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.1e-14 Score=130.23 Aligned_cols=83 Identities=25% Similarity=0.416 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 402 DELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~----e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
..++++|||+|||.++++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|..|+..|| |..|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ-----GFPF 76 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT-----TCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC-----CCEE
Confidence 3456899999999999999999 9999999999998763 56789999999999999999999999 9999
Q ss_pred cCeEEEEEEccCchh
Q 002920 478 KGRQLTVLKALDKKL 492 (865)
Q Consensus 478 ~Gr~L~V~~A~~k~~ 492 (865)
+|++|.|.||.++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 YDKPMRIQYAKTDSD 91 (97)
T ss_dssp TTEECEEEECSSCCT
T ss_pred CCcEEEEEEccCCCc
Confidence 999999999987643
No 252
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=6e-15 Score=127.56 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 406 NTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 406 ~tLfV~NLP~~v------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
++|||+|||..+ |+++|+++|++||.|.+|.++ +.+|.++|||||+|.+.++|.+|+..|| |..|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSS-----SCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhc-----CcccCC
Confidence 699999999999 779999999999999999877 4588999999999999999999999999 999999
Q ss_pred e-EEEE
Q 002920 480 R-QLTV 484 (865)
Q Consensus 480 r-~L~V 484 (865)
+ +|.|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-14 Score=129.91 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..+++|||+|||.++++++|+++|+.||.|.+|.++ .++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA-----NFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEE
Confidence 346899999999999999999999999999999887 368999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.||.++
T Consensus 94 ~V~~a~~~ 101 (101)
T 2la4_A 94 RTGWGKER 101 (101)
T ss_dssp CCCBCCCC
T ss_pred EEEeccCC
Confidence 99998753
No 254
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=127.11 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec--C
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--G 479 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~--G 479 (865)
..+.++|||+|||.++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|| |..|. |
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR-----GFPLGGPD 82 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT-----TCBCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC-----CCEeCCCC
Confidence 345689999999999999999999999999999988642 7899999999999999999999 99999 9
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
++|.|.||.++.
T Consensus 83 ~~l~V~~a~~~~ 94 (97)
T 1why_A 83 RRLRVDFAKSGP 94 (97)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998763
No 255
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.7e-14 Score=126.46 Aligned_cols=77 Identities=19% Similarity=0.434 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 401 EDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~-~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
....+++|||+|||+ ++++++|+++|+.||.|..|.+ ++|||||+|.+.++|.+|+..|| |..|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXES-----QEMNFG 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHT-----TSEETT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECC
Confidence 445678999999998 9999999999999999999987 37999999999999999999999 999999
Q ss_pred eEEEEEEccCc
Q 002920 480 RQLTVLKALDK 490 (865)
Q Consensus 480 r~L~V~~A~~k 490 (865)
+.|.|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998764
No 256
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5e-14 Score=128.87 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC-----e
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-----R 266 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g-----r 266 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|+.||..|||..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999875 899999999999999999999999999 9
Q ss_pred eEEEEecCCCC
Q 002920 267 PIAVDWAVPKN 277 (865)
Q Consensus 267 ~l~V~~a~~k~ 277 (865)
.|.|.++.++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998764
No 257
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.9e-14 Score=134.04 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
....++|||+|||+++|+++|+++|+.||. |..|.|+.+.. |+++|||||+|.+.++|++||. ||+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999999 89999999876 9999999999999999999999 999999999999
Q ss_pred EEecCCC
Q 002920 270 VDWAVPK 276 (865)
Q Consensus 270 V~~a~~k 276 (865)
|.++.+.
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 258
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=127.87 Aligned_cols=82 Identities=28% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+||..|| |..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 83 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-----DGEIDGNK 83 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCeECCeE
Confidence 44568999999999999999999999874 67788888899999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 259
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=4.9e-15 Score=125.92 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 486 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V~~ 486 (865)
+|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+.. + +..|+|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-----YHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-----SCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-----CCeECCEEEEEEE
Confidence 599999999999999999999999999999999988999999999999999999999985 7 8999999999988
Q ss_pred c
Q 002920 487 A 487 (865)
Q Consensus 487 A 487 (865)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 260
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=125.81 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH-----HYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc-----CCccCCcEE
Confidence 346899999999999999999999999999999886 6899999999999999999999 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.|+.++.
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 261
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=7e-15 Score=134.39 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~---V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
....++|||+|||+++|+++|+++|+.||. |..|.|+.+.. |+++|||||+|.+.++|.+||. || |..|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH-----RMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT-----TCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC-----cceeC
Confidence 345689999999999999999999999998 89999999986 9999999999999999999999 99 99999
Q ss_pred CeEEEEEEccCch
Q 002920 479 GRQLTVLKALDKK 491 (865)
Q Consensus 479 Gr~L~V~~A~~k~ 491 (865)
||.|.|.++.++.
T Consensus 81 gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 81 QRYVEVYEINNED 93 (107)
T ss_dssp SSCCCCEECCHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999987654
No 262
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.52 E-value=4.5e-15 Score=141.88 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=74.4
Q ss_pred ceEEEEECCHHHHHHHHHHhcCCccCCeEEEEec--cCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcc
Q 002920 153 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQ--LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 230 (865)
Q Consensus 153 G~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~--~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~ 230 (865)
|+||..|...+.+..++..+... ..|...-... ..........++|||+|||+++|+++|+++|+.|| |..|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 56788888887777666654333 2332221111 11122345678999999999999999999999999 66999999
Q ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 002920 231 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 277 (865)
Q Consensus 231 d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k~ 277 (865)
++. |+++|||||+|.+.++|++|| .+|+..|.|+.|.|.++.+..
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 975 999999999999999999999 689999999999999987654
No 263
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=9.7e-15 Score=126.26 Aligned_cols=72 Identities=26% Similarity=0.517 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCC------CHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCe-eEE
Q 002920 197 WKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIA 269 (865)
Q Consensus 197 ~~l~V~nLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr-~l~ 269 (865)
++|||+|||+.+ ++++|+++|+.||.|.+|.|+. .+|.++|||||+|.+.++|..|+..|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 7899999999999999999883 5799999999999999999999999999999999 887
Q ss_pred E
Q 002920 270 V 270 (865)
Q Consensus 270 V 270 (865)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 264
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=130.08 Aligned_cols=79 Identities=22% Similarity=0.400 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN-----GTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 345689999999999999999999999999999998854 7999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999998764
No 265
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=123.51 Aligned_cols=79 Identities=30% Similarity=0.382 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++++++|+++|+.||.|..|.|+ +|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34577899999999999999999999999999999996 5899999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 266
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=123.03 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHh-cCCCCCCeEecCe
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLKGR 480 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~l-n~~~~~g~~l~Gr 480 (865)
....++|||+|||..+++++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|+..| + |..|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~-----~~~~~g~ 77 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFN-----KLIVNGR 77 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTT-----TCEETTE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcC-----CeeECCC
Confidence 34568999999999999999999999999999999875 3799999999999999999999 8 9999999
Q ss_pred EEEEEEcc
Q 002920 481 QLTVLKAL 488 (865)
Q Consensus 481 ~L~V~~A~ 488 (865)
+|.|.||.
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999973
No 267
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.5e-15 Score=137.21 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999999886666667789999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97643
No 268
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=126.72 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQ-----GLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHT-----TCCSSSSC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 34468999999999999999999999999997 666644 589999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.+|.++
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999875
No 269
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=6.9e-15 Score=124.99 Aligned_cols=75 Identities=17% Similarity=0.358 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 198 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 198 ~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
+|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999999 5999999999999875
No 270
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=2.7e-14 Score=131.09 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
+...++|||+|||+++++++|+++|+.|| .|..|.|+. +.++|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 899999864 2478999999999999999999999999999999999
Q ss_pred ecCCC
Q 002920 272 WAVPK 276 (865)
Q Consensus 272 ~a~~k 276 (865)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 271
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=126.66 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456778999999999999999999999884 56777787889999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987653
No 272
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=4.3e-14 Score=129.40 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
.....++|||+|||.++|+++|+++|+.||.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 93 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH-----GKSFANQ 93 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC-----CCEECCe
Confidence 44567899999999999999999999999999999886 7999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
.|.|.|+.++.
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999997653
No 273
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=125.50 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC--CeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~--gr~l~ 269 (865)
...+.++|||+|||+.+|+++|+++|+.||.|..|.++.+ +|||||+|.+.++|+.|+..|||..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999999753 789999999999999999999999999 99999
Q ss_pred EEecCCCC
Q 002920 270 VDWAVPKN 277 (865)
Q Consensus 270 V~~a~~k~ 277 (865)
|.|+.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 274
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=2.7e-14 Score=127.71 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
..+.++|||+|||+.+++++|+ ++|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999974 57789999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 002920 269 AVDWAVPKN 277 (865)
Q Consensus 269 ~V~~a~~k~ 277 (865)
.|.|+.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 275
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=129.03 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
...+|||+|||+++|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|.+|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999875 999999999999999999999 589999999999999886
Q ss_pred CC
Q 002920 275 PK 276 (865)
Q Consensus 275 ~k 276 (865)
+.
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 276
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-14 Score=123.29 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.||.|..|.++ ++||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLD-----NTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCeeCCcE
Confidence 3456899999999999999999999999999999886 4599999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.|+.++.
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998763
No 277
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=126.68 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||..+|+++|+++|+.||.|..|.++. .+|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~-----g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELD-----NMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHT-----TCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhC-----CCEeCCce
Confidence 34568999999999999999999999999999998873 37999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.|+.++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 278
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=8.5e-14 Score=126.11 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|+.||.|..|.|+ ++||||+|.+.++|.+|+..|| |..|.|++|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN-----GKDLEGENI 75 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC-----CCccCCCEE
Confidence 345899999999999999999999999999999875 5699999999999999999999 999999999
Q ss_pred EEEEccCchh
Q 002920 483 TVLKALDKKL 492 (865)
Q Consensus 483 ~V~~A~~k~~ 492 (865)
.|.|+.++..
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999987643
No 279
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=132.50 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999999987 9999999999999999999999 99999999999
Q ss_pred EEEecCCC
Q 002920 269 AVDWAVPK 276 (865)
Q Consensus 269 ~V~~a~~k 276 (865)
.|.++.+.
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 280
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=1.7e-14 Score=150.23 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG--~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++++.+++++|||||+|.+.++|.+||..|| |..|+|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln-----g~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST-----TSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCeECCEE
Confidence 467999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.+..
T Consensus 142 l~V~~a~~~~ 151 (229)
T 3q2s_C 142 PVVTPVNKQF 151 (229)
T ss_dssp CEEEECCHHH
T ss_pred eEEEECCCCc
Confidence 9999998654
No 281
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-15 Score=140.16 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 474 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~s--------v~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g 474 (865)
...++|||+|||+++++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.+|+..|| |
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g 79 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-----G 79 (116)
Confidence 34689999999999999999999999999999 8999998889999999999999999999999999 9
Q ss_pred eEecCeEEEEEEccCch
Q 002920 475 IFLKGRQLTVLKALDKK 491 (865)
Q Consensus 475 ~~l~Gr~L~V~~A~~k~ 491 (865)
..|.|++|.|.+|.++.
T Consensus 80 ~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRA 96 (116)
Confidence 99999999999998764
No 282
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-13 Score=123.06 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~f--G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
...++|||+|||+.+|+++|+++|+.| |.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN-----GKVLDGS 79 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS-----SEEETTE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC-----CCEeCCc
Confidence 456899999999999999999999999 999998763 6899999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 283
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7e-14 Score=125.66 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|++ .+|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 445678999999999999999999999999999999975 37999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998765
No 284
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=6.5e-15 Score=132.92 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+++|+++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999987 667777789999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
No 285
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=129.89 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC--ceeCCeeEE
Q 002920 193 KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng--~~i~gr~l~ 269 (865)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|..|+..|++ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 479999999999999999998864 568999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.|+..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976653
No 286
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.1e-14 Score=121.05 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHh-CCceeCCeeEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIAV 270 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-ng~~i~gr~l~V 270 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.+++ ++|||||+|.+.++|..|+..| +|..+.|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 445678999999999999999999999999999999986 4799999999999999999998 999999999999
Q ss_pred EecC
Q 002920 271 DWAV 274 (865)
Q Consensus 271 ~~a~ 274 (865)
.|+.
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 287
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.6e-14 Score=130.53 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+. + |..|+|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~-----~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--S-----QINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--C-----CCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--C-----CCeECCEEEE
Confidence 35799999999999999999999999999999999998 99999999999999999999998 8 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.++.++.
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99998664
No 288
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.6e-14 Score=127.45 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 289
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=139.53 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEE--Ee---ecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV--PV---LHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 476 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~--i~---~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~ 476 (865)
..++++|||+|||+.+|+++|+++|+.||.|..|. ++ ....+|.++|||||+|.+.++|.+|+..|| |..
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~ 116 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-----GYV 116 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-----TBE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-----CCE
Confidence 34568999999999999999999999999998751 11 112478899999999999999999999999 999
Q ss_pred ecCeEEEEEEccCch
Q 002920 477 LKGRQLTVLKALDKK 491 (865)
Q Consensus 477 l~Gr~L~V~~A~~k~ 491 (865)
|+|++|.|.||.+..
T Consensus 117 ~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 117 LFGKPMVVQFARSAR 131 (143)
T ss_dssp ETTEECEEEECCCSC
T ss_pred eCCcEEEEEECCCCC
Confidence 999999999997654
No 290
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.4e-14 Score=122.82 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+++|+++|+++|+.||.|..|.++ ++||||+|.+.++|.+|+..|| |..|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLN-----GKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 3456899999999999999999999999999999886 4599999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.|+.++
T Consensus 73 l~v~~a~~~ 81 (90)
T 2dnp_A 73 INVELSTKG 81 (90)
T ss_dssp CEEEESCCC
T ss_pred EEEEECCCC
Confidence 999999865
No 291
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=125.74 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT-----EEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCeE
Confidence 3456899999999999999999999999988766 2478899999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.++.
T Consensus 83 l~v~~a~~~~ 92 (96)
T 1fjc_A 83 VSLYYTGEKG 92 (96)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEcCCCC
Confidence 9999997653
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=5e-14 Score=127.08 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+.+++++|+++|+.||.|.+|.++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999999999973 6899999999999999999999999999999999998
Q ss_pred CC
Q 002920 274 VP 275 (865)
Q Consensus 274 ~~ 275 (865)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 293
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=2.8e-14 Score=148.59 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
..++|||+|||+.+|+++|+++|+.|| .|.+|.|++++.+|+++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 002920 273 AVPK 276 (865)
Q Consensus 273 a~~k 276 (865)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 294
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=133.42 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEV----VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 479 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V----~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G 479 (865)
..++|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|.+||.. | +..|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~-----~~~l~g 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-H-----KDLLGK 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-T-----TEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-C-----CCeeCC
Confidence 35799999999999999999999999975 689999884 899999999999999999999986 8 999999
Q ss_pred eEEEEEEccCch
Q 002920 480 RQLTVLKALDKK 491 (865)
Q Consensus 480 r~L~V~~A~~k~ 491 (865)
|.|.|..+..++
T Consensus 95 R~i~V~~a~~~e 106 (123)
T 2dha_A 95 RYIELFRSTAAE 106 (123)
T ss_dssp CEECCEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999987554
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4e-14 Score=130.29 Aligned_cols=76 Identities=20% Similarity=0.085 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLA-----YSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHT-----TCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 357999999999999999999999999999998762 57899999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.||...
T Consensus 78 V~~a~~~ 84 (111)
T 1whx_A 78 LEWAPIG 84 (111)
T ss_dssp EEEEETT
T ss_pred EEECCCC
Confidence 9998753
No 296
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=2.4e-13 Score=123.19 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987654
No 297
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2e-14 Score=132.84 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|..|.+..+..+|.++|||||+|.+.++|..||..|||..|.|++|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984332222222688999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002920 273 AVPKNI 278 (865)
Q Consensus 273 a~~k~~ 278 (865)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-13 Score=120.13 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|++ +||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 455678999999999999999999999999999999974 499999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987653
No 299
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=1.2e-13 Score=126.48 Aligned_cols=78 Identities=28% Similarity=0.569 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+++|+++|+++|+.||.|..|.|+ +|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999996 6899999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998754
No 300
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=6.9e-14 Score=139.69 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 401 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
....+++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln-----g~~l~Gr 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGR 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST-----TCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
+|.|.||...
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9999999765
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.9e-14 Score=129.34 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=71.7
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCC----HHH----HHHHHH--HhcCCC
Q 002920 406 NTIFICNL----PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT----VEA----ATAAVS--ASKTTS 471 (865)
Q Consensus 406 ~tLfV~NL----P~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s----~e~----A~~Al~--~ln~~~ 471 (865)
+.|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln--- 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS--- 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT---
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc---
Confidence 58999999 9999999999999999999999999999999999999999996 433 888888 778
Q ss_pred CCCeEecCeEEEEEEccC
Q 002920 472 GLGIFLKGRQLTVLKALD 489 (865)
Q Consensus 472 ~~g~~l~Gr~L~V~~A~~ 489 (865)
|..|+|++|.|.+-..
T Consensus 80 --g~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 80 --GCFIMGFKFEVILNKH 95 (136)
T ss_dssp --CEEETTEEEEEEECCT
T ss_pred --CCeecCcEEEEEECcc
Confidence 9999999999998543
No 302
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.8e-13 Score=122.64 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 192 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.....++|||+|||+ .+++++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345778999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 303
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.8e-15 Score=138.20 Aligned_cols=85 Identities=24% Similarity=0.445 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g 265 (865)
...++|||+|||+.+++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred eeEEEEecCCCCc
Q 002920 266 RPIAVDWAVPKNI 278 (865)
Q Consensus 266 r~l~V~~a~~k~~ 278 (865)
+.|.|.|+.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987653
No 304
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.6e-14 Score=125.39 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+++++|+++|+.||.|. +.++. +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999997 66664 45889999999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 305
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=128.02 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|+.||.|..|.|+. ++|||||+|.+.++|+.||..|||..|.|++|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999874 57899999999999999999999999999999999996
Q ss_pred CC
Q 002920 275 PK 276 (865)
Q Consensus 275 ~k 276 (865)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 306
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.5e-14 Score=123.90 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCC-eEecCe
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG-IFLKGR 480 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~-V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g-~~l~Gr 480 (865)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|| | ..|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLS-----GKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHT-----TTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHcc-----CCeeECCE
Confidence 34579999999999999999999999999 6666542 48999999999999999999999 9 999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.||.++.
T Consensus 74 ~l~v~~a~~~~ 84 (93)
T 2cqh_A 74 IMEVDYSVSKK 84 (93)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998763
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=120.41 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+|+++|+++|+.||.|..|.|++ +||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456778999999999999999999999999999999974 499999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997764
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=7.7e-14 Score=124.57 Aligned_cols=81 Identities=23% Similarity=0.445 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2368899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997664
No 309
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.9e-14 Score=128.89 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=71.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECC----HHH----HHHHHH--HhCCce
Q 002920 197 WKLIIRNI----PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC----KRD----AESAIQ--KFNGQK 262 (865)
Q Consensus 197 ~~l~V~nL----p~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~----~e~----A~~Al~--~lng~~ 262 (865)
..|||+|| |+.+++++|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEEecC
Q 002920 263 FGKRPIAVDWAV 274 (865)
Q Consensus 263 i~gr~l~V~~a~ 274 (865)
|.|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 310
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.7e-14 Score=125.14 Aligned_cols=77 Identities=19% Similarity=0.391 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 402 DELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 402 ~~~~~tLfV~NLP~-~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|..|+..|| |..|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES-----QEMNFGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT-----CSSCBTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC-----CCeeCCc
Confidence 34568999999999 99999999999999999999873 7899999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 002920 481 QLTVLKALDKK 491 (865)
Q Consensus 481 ~L~V~~A~~k~ 491 (865)
+|.|.|+.++.
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 99999997653
No 311
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9e-14 Score=124.09 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv-~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
..++|||+|||+++++++|+++|+.||.|.+| .|+.++.+ |.|||+|.+.++|.+|+..|| |..|+|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLN-----GFQLENFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 46899999999999999999999999999999 47777643 449999999999999999999 999999999
Q ss_pred EEEEccCc
Q 002920 483 TVLKALDK 490 (865)
Q Consensus 483 ~V~~A~~k 490 (865)
.|.+|.++
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999876
No 312
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=1.8e-13 Score=125.57 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 403 ELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 403 ~~~~tLfV~NLP~~-vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN-----GRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 34689999999999 999999999999999999987 48999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 002920 482 LTVLKALDK 490 (865)
Q Consensus 482 L~V~~A~~k 490 (865)
|.|.||.+.
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 313
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4e-13 Score=120.71 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCC--CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV--GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
.....++|||+|||+.+|+++|+++|+.| |.|..|.++ +|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999999874 57999999999999999999999999999999
Q ss_pred EEecCCCC
Q 002920 270 VDWAVPKN 277 (865)
Q Consensus 270 V~~a~~k~ 277 (865)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 314
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=4.2e-14 Score=127.81 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+. ++..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356799999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7664
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=4.8e-14 Score=132.28 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCee--EEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~--sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+||.. + +..|+||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~-----~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-H-----KERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-T-----TCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-C-----CCEECCE
Confidence 346799999999999999999999999 577 899999986 99999999999999999999974 7 7999999
Q ss_pred EEEEEEccCc
Q 002920 481 QLTVLKALDK 490 (865)
Q Consensus 481 ~L~V~~A~~k 490 (865)
.|.|.++..+
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998644
No 316
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.9e-13 Score=120.09 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++++++|+++|++| .|.+|.+. .++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH-----QYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC-----CCeECCcEEE
Confidence 35799999999999999999999999 99999874 478999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 002920 484 VLKALDK 490 (865)
Q Consensus 484 V~~A~~k 490 (865)
|.||...
T Consensus 72 V~~a~~~ 78 (88)
T 1wg1_A 72 VQLQPTD 78 (88)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998643
No 317
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.45 E-value=2.4e-14 Score=136.91 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEE
Q 002920 403 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 482 (865)
Q Consensus 403 ~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L 482 (865)
...++|||+|||+++|+++|+++|++|| |+.|.|++++. ++++|||||+|.+.++|.+|| .+| +..|+||.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~-----g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD-----RANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC-----SCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC-----CCEECCEEE
Confidence 3457999999999999999999999999 77999999975 999999999999999999999 889 999999999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.++..+.
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999987653
No 318
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=119.87 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ |+.. .+.+.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~---~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE---DLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC---EEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC---CcccCCEE
Confidence 345689999999999999999999999999999998864 79999999999999983 4511 35567999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.+|.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1.6e-13 Score=137.00 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|.|++|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=121.62 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 483 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~ 483 (865)
..++|||+|||+++|+++|+++|+.||.|.+| +.+..++. ||||+|.+.++|.+|+. || |..|+|+.|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~-----g~~~~g~~l~ 75 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QS-----QHSLGGHRLR 75 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CS-----CCEETTEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cC-----CeEECCEEEE
Confidence 34799999999999999999999999999987 56665655 99999999999999999 99 9999999999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.+|.++.
T Consensus 76 V~~a~~~~ 83 (94)
T 2e5g_A 76 VRPREQKE 83 (94)
T ss_dssp CBCSCCSC
T ss_pred EEECCcCC
Confidence 99987653
No 321
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.7e-13 Score=118.77 Aligned_cols=77 Identities=23% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~ 78 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESVQ 78 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeE
Confidence 345689999996 89999999999999999999874 478999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 322
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=122.00 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC-ceeCCeeEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-QKFGKRPIAV 270 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng-~~i~gr~l~V 270 (865)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|..|+..||| ..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6655552 579999999999999999999999 9999999999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.|+.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998765
No 323
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=1.2e-13 Score=129.56 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceE--EEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
....++|||+|||+++|+++|+++|+.| .|. +|.|+.++. |+++|||||+|.+.++|++||. +++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999999999 566 899999986 9999999999999999999998 5889999999999
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988543
No 324
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=2.2e-13 Score=124.98 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
....++|||+|||+. +++++|+++|+.||.|..|.| ++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345589999999999 999999999999999999998 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.+..
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 325
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.6e-13 Score=122.69 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 193 KTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 193 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
..+.++|||+|||+ .+++++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 997654
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.1e-14 Score=131.18 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCce----EEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLV----WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I----~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
....+|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345799999999999999999999999975 689999884 899999999999999999999995 99999999999
Q ss_pred EEecCCC
Q 002920 270 VDWAVPK 276 (865)
Q Consensus 270 V~~a~~k 276 (865)
|..+.+.
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=4.7e-13 Score=121.65 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEeecCCC-CCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 404 LQNTIFICNLPF-----DLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 404 ~~~tLfV~NLP~-----~vteedL~e~Fs~fG~V~sv~i~~d~~~-g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
++++|+|+||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|| |..|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-----G~~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-----GRYF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-----TCEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-----CCEE
Confidence 468999999963 2378999999999999999999988654 6889999999999999999999999 9999
Q ss_pred cCeEEEEEEccC
Q 002920 478 KGRQLTVLKALD 489 (865)
Q Consensus 478 ~Gr~L~V~~A~~ 489 (865)
+||+|.|.++..
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999864
No 328
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=119.50 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=65.1
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 406 NTIFICNLPFDLDNEE----VKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 406 ~tLfV~NLP~~vteed----L~e~Fs~f-G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
+.|||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|+ |..|.||
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~-----G~~l~gr 74 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRME-----NEDVFGN 74 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHT-----TCCSSSS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhc-----CCccCCc
Confidence 3499999999999887 56899999 599997 33 999999999999999999999 9999999
Q ss_pred EEEEEEccCchh
Q 002920 481 QLTVLKALDKKL 492 (865)
Q Consensus 481 ~L~V~~A~~k~~ 492 (865)
+|.|.||..+.+
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999987654
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=125.62 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=68.9
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe---
Q 002920 403 ELQNTIFI--CNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--- 477 (865)
Q Consensus 403 ~~~~tLfV--~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l--- 477 (865)
.++++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|+..|| |..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~~ 91 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVVDD 91 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT-----TCEEECT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCEEccc
Confidence 34679999 66999999999999999999999987652 37999999999999999999999 9988
Q ss_pred --cCeEEEEEEccCc
Q 002920 478 --KGRQLTVLKALDK 490 (865)
Q Consensus 478 --~Gr~L~V~~A~~k 490 (865)
.|++|+|.|+...
T Consensus 92 lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 92 LGQKITLYLNFVEKV 106 (114)
T ss_dssp TSCEEECEEEEESCC
T ss_pred cCCCcEEEEEecccC
Confidence 7999999998754
No 330
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=117.67 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHH----HHHhhcCCC-ceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 002920 195 QKWKLIIRNIPFKAKVNE----IKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 269 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~----L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~ 269 (865)
..+.|||+|||+.+++++ |+++|++|| .|.+| +| |+|||.|.+.++|.+|++.|+|..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344499999999999988 558999995 99988 34 9999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 002920 270 VDWAVPKNI 278 (865)
Q Consensus 270 V~~a~~k~~ 278 (865)
|.+|..+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987653
No 331
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=119.26 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
....++|||+|||+.+|+++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|..||. |||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 45555554 99999999999999999 999999999999998
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87554
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=4.5e-13 Score=117.69 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
..++|||+|||+.+++++|+++|+.| .|..|.|. .++|||||+|.+.++|..|+..|||..+.|++|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 478999999999999999999999999999999999986
Q ss_pred CCC
Q 002920 275 PKN 277 (865)
Q Consensus 275 ~k~ 277 (865)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=121.29 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEE-EEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 272 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~ 272 (865)
...++|||+|||+.+++++|+++|+.||.|..| .|+.++.+| .|||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 588876543 499999999999999999999999999999999
Q ss_pred cCCCC
Q 002920 273 AVPKN 277 (865)
Q Consensus 273 a~~k~ 277 (865)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=7e-13 Score=124.40 Aligned_cols=82 Identities=16% Similarity=0.357 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccce-EEEEECCHHHHHHHHHHhCCceeCC--eeEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIA 269 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~lng~~i~g--r~l~ 269 (865)
+..-..|||+||++.+|+++|+++|+.||.|.+|.|+.+ .+|| |||+|.+.++|..|+..|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344567899999999999999999999999999998764 3677 9999999999999999999999987 9999
Q ss_pred EEecCCCCcc
Q 002920 270 VDWAVPKNIY 279 (865)
Q Consensus 270 V~~a~~k~~~ 279 (865)
|+|+.+....
T Consensus 100 I~~ak~~~l~ 109 (130)
T 3zzy_A 100 IDFSKLTSLN 109 (130)
T ss_dssp EEECSCSSCC
T ss_pred EEecCCCcee
Confidence 9999877543
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-12 Score=117.20 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|| ++|+++|+++|+.||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 478999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
|+.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987653
No 336
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=6.7e-14 Score=134.74 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEE--------EEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeC
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV--------YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 264 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v--------~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~ 264 (865)
....++|||+|||+.+|+++|+++|+.||.|..| .+. .+|.++|||||+|.+.++|..||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999998764 332 36889999999999999999999999999999
Q ss_pred CeeEEEEecCCCC
Q 002920 265 KRPIAVDWAVPKN 277 (865)
Q Consensus 265 gr~l~V~~a~~k~ 277 (865)
|++|.|.|+.+..
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=5.7e-13 Score=117.40 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee--CCeeEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIA 269 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i--~gr~l~ 269 (865)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+++ ++|||||+|.+.++|++ |++..+ .|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999874 78999999999999983 456554 699999
Q ss_pred EEecCCCC
Q 002920 270 VDWAVPKN 277 (865)
Q Consensus 270 V~~a~~k~ 277 (865)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.2e-13 Score=123.87 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=71.2
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee-----C
Q 002920 192 SKTQKWKLII--RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-----G 264 (865)
Q Consensus 192 ~~~~~~~l~V--~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i-----~ 264 (865)
...+..+||| +||++.+++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|+..|||..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445778999 77999999999999999999999998864 379999999999999999999999998 7
Q ss_pred CeeEEEEecCCCC
Q 002920 265 KRPIAVDWAVPKN 277 (865)
Q Consensus 265 gr~l~V~~a~~k~ 277 (865)
|++|+|.++...+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 9999999987543
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=1e-12 Score=133.15 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHh--cCCccCCeEEEEeccCCCCCC---------CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEc
Q 002920 161 TVKSACASVALL--HQKEIKGGTVWARQLGGEGSK---------TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 229 (865)
Q Consensus 161 s~e~A~~Al~~l--ng~~i~G~~i~v~~~~~~~~~---------~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~ 229 (865)
+.+.+..|+... ....+.+....+++......+ ...++|||+|||+.+|+++|+++|+.||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 566777777755 444555555555544221111 124799999999999999999999999999999999
Q ss_pred ccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 002920 230 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 276 (865)
Q Consensus 230 ~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~~k 276 (865)
++. +|.++|||||+|.+.++|..||..+ +..|.|++|.|.|+...
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 886 5889999999999999999999864 56999999999997543
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=7.1e-13 Score=129.07 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC--eeEEE
Q 002920 193 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK--RPIAV 270 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g--r~l~V 270 (865)
+....+|||+||++.+|+++|+++|+.||.|.+|.|+.+ .++|||||+|.+.++|+.|+..|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 445567999999999999999999999999999999653 257999999999999999999999999955 99999
Q ss_pred EecCCCC
Q 002920 271 DWAVPKN 277 (865)
Q Consensus 271 ~~a~~k~ 277 (865)
.|+.++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=124.08 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~---g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
..++|||+|||+++|+++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||..|+ + ++|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-----~--~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-----E--EDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-----E--ETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-----h--cCCc
Confidence 458999999999999999999999999999 888888776 7999999999999999999999986 3 7788
Q ss_pred EEEEEEcc
Q 002920 481 QLTVLKAL 488 (865)
Q Consensus 481 ~L~V~~A~ 488 (865)
.|.+..+.
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 88777654
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=1.2e-12 Score=122.83 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCce-EEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEE
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 482 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~-aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L 482 (865)
..|||+||++.+|+++|+++|++||.|.+|.|+.. .+|| |||+|.+.++|..|+..|| |..|.| +.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~Ln-----G~~i~g~~~~L 98 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTL 98 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHT-----TCEEETTEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcC-----CCeecCCCcEE
Confidence 47889999999999999999999999999987753 3687 9999999999999999999 999988 999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998653
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=7.4e-13 Score=115.70 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcc----C-------CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHH
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 167 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~ 167 (865)
+..++|||+|||+++++++|+++|+.| | .|.+|.++ ..+|||||+|.+.++|.+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~---------------~~kg~afV~f~~~~~a~~ 68 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------------QDKNFAFLEFRSVDETTQ 68 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC---------------SSSSEEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec---------------CCCcEEEEEcCCHHHHHH
Confidence 567899999999999999999999999 8 99999983 237999999999999999
Q ss_pred HHHHhcCCccCCeEEEEec
Q 002920 168 SVALLHQKEIKGGTVWARQ 186 (865)
Q Consensus 168 Al~~lng~~i~G~~i~v~~ 186 (865)
|+ .|||..|.|+.|.|.+
T Consensus 69 A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 69 AM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HG-GGTTCEETTEECEEEC
T ss_pred HH-hcCCCEECCeEEEEeC
Confidence 99 8999999999999864
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=7.1e-13 Score=115.84 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAF----G-------EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~f----G-------~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
..++|||+|||+++++++|+++|+.| | .|.++.++.+ +|||||+|.+.++|.+|+ .||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~---- 73 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD---- 73 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC----
Confidence 45799999999999999999999999 8 8999987643 799999999999999999 999
Q ss_pred CCeEecCeEEEEEE
Q 002920 473 LGIFLKGRQLTVLK 486 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~ 486 (865)
|..|+|+.|.|..
T Consensus 74 -g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 -GIIFQGQSLKIRR 86 (87)
T ss_dssp -TCEETTEECEEEC
T ss_pred -CCEECCeEEEEeC
Confidence 9999999999974
No 345
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.9e-13 Score=122.11 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC---CCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
...++|||+|||+++|+++|+++|+.||.|. +.++.+..+ |.++|||||+|.+.++|++||..|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 888888777 7999999999999999999999883 356666655
Q ss_pred Eec
Q 002920 271 DWA 273 (865)
Q Consensus 271 ~~a 273 (865)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=9.3e-13 Score=128.24 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=70.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 482 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L 482 (865)
-.+|||+|||+.+|+++|+++|++||.|..|.|+.. .++|||||+|.+.++|..|+..|| |..|.| +.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~Ln-----G~~i~g~g~~L 116 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTL 116 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHST-----TBCSSSSCSCE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCcEE
Confidence 357999999999999999999999999999988643 268999999999999999999999 999965 999
Q ss_pred EEEEccCch
Q 002920 483 TVLKALDKK 491 (865)
Q Consensus 483 ~V~~A~~k~ 491 (865)
.|.||.++.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999998763
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=120.52 Aligned_cols=78 Identities=24% Similarity=0.363 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccce-EEEEECCHHHHHHHHHHhCCceeCC--eeEEEE
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIAVD 271 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~lng~~i~g--r~l~V~ 271 (865)
....|||+|||+.+|+++|+++|+.||.|.+|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3345789999999999999999999999999999652 286 9999999999999999999999977 699999
Q ss_pred ecCCCCc
Q 002920 272 WAVPKNI 278 (865)
Q Consensus 272 ~a~~k~~ 278 (865)
++.++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9987753
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=5.5e-13 Score=123.44 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCee-----E
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-----I 268 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~-----l 268 (865)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|+.||..|||..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999875 89999999999999999999999999998 7
Q ss_pred EEEecCCC
Q 002920 269 AVDWAVPK 276 (865)
Q Consensus 269 ~V~~a~~k 276 (865)
.|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776554
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=3.9e-13 Score=124.40 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE--
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ-- 481 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~-- 481 (865)
..++|||.|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|| |..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT-----TCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC-----CCEECCcEee
Confidence 4589999999999999999999999999999998754 899999999999999999999 99999998
Q ss_pred ---EEEEEccCc
Q 002920 482 ---LTVLKALDK 490 (865)
Q Consensus 482 ---L~V~~A~~k 490 (865)
|.|..+.++
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 777766543
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=2e-12 Score=117.56 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHhhcCCCceEEEEEcccCCC-CCccceEEEEECCHHHHHHHHHHhCCceeCCe
Q 002920 193 KTQKWKLIIRNIPF-----KAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 266 (865)
Q Consensus 193 ~~~~~~l~V~nLp~-----~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~lng~~i~gr 266 (865)
..++++|+|+||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999963 2378999999999999999999988654 68899999999999999999999999999999
Q ss_pred eEEEEecCC
Q 002920 267 PIAVDWAVP 275 (865)
Q Consensus 267 ~l~V~~a~~ 275 (865)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=1.4e-12 Score=121.80 Aligned_cols=77 Identities=23% Similarity=0.411 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeE
Q 002920 402 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 481 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~ 481 (865)
...+++|||+|| ++|+++|+++|+.||.|.+|.|+ .++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln-----g~~~~g~~ 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESVQ 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCBCSSCB
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC-----CCEECCeE
Confidence 345789999996 69999999999999999999885 478999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 002920 482 LTVLKALDKK 491 (865)
Q Consensus 482 L~V~~A~~k~ 491 (865)
|.|.||.++.
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7e-13 Score=116.36 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=65.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||.++|+++|+++|+.||.|.+|.|+.+ ++|||||+|.+.++|++| +.. .+.+.|++|.|
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~---~~~~~g~~l~v 72 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGE---DLIIKGISVHI 72 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTC---EEEETTEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcC---CceeCCEEEEE
Confidence 589999999999999999999999999999988754 689999999999999754 311 46679999999
Q ss_pred EEccCch
Q 002920 485 LKALDKK 491 (865)
Q Consensus 485 ~~A~~k~ 491 (865)
.++.++.
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998764
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=6.4e-12 Score=117.33 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCce-EEEEeCCHHHHHHHHHHhcCCCCCCeEecC--eEEE
Q 002920 407 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLT 483 (865)
Q Consensus 407 tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~-aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G--r~L~ 483 (865)
.|||+|||+.+|+++|+++|++||.|..|.|+. . .|| |||+|.+.++|..|+..|| |..|.| ++|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~Ln-----G~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALN-----GADIYAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHT-----TCCCBTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCeEEE
Confidence 467999999999999999999999999998864 2 286 9999999999999999999 999987 6999
Q ss_pred EEEccCch
Q 002920 484 VLKALDKK 491 (865)
Q Consensus 484 V~~A~~k~ 491 (865)
|.||.++.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998764
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2.3e-12 Score=130.50 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCeEEEE
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 484 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr~L~V 484 (865)
.++|||+|||+++|+++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|+..++ ..|+|++|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~------~~~~Gr~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG------QKYKETDLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT------CEETTEECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC------CeECCEEEEE
Confidence 4799999999999999999999999999999999886 58899999999999999999997765 5899999999
Q ss_pred EEccCc
Q 002920 485 LKALDK 490 (865)
Q Consensus 485 ~~A~~k 490 (865)
.++..-
T Consensus 182 ~~~~~y 187 (193)
T 2voo_A 182 LFKDDY 187 (193)
T ss_dssp EETTTC
T ss_pred EEhHHH
Confidence 997653
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=114.09 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEec
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 273 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a 273 (865)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999864 78999999999999986433 134459999999999
Q ss_pred CCCC
Q 002920 274 VPKN 277 (865)
Q Consensus 274 ~~k~ 277 (865)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=4e-12 Score=115.55 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=71.4
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeecCCC--CCCCceEEEEeCCHHHHHHHHHHhcCCC
Q 002920 404 LQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTS 471 (865)
Q Consensus 404 ~~~tLfV~NL--P~~vt--------eedL~e~Fs~fG~V~sv~i~~d~~~--g~~kG~aFV~F~s~e~A~~Al~~ln~~~ 471 (865)
++++|.|.|+ |.++. +++|++.|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|+..||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln--- 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT--- 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT---
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC---
Confidence 4689999999 44443 3799999999999999999988754 3689999999999999999999999
Q ss_pred CCCeEecCeEEEEEEccC
Q 002920 472 GLGIFLKGRQLTVLKALD 489 (865)
Q Consensus 472 ~~g~~l~Gr~L~V~~A~~ 489 (865)
|..|+||+|.|.|+..
T Consensus 81 --G~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 81 --GRKFANRVVVTKYCDP 96 (105)
T ss_dssp --TCEETTEECEEEEECH
T ss_pred --CCEeCCCEEEEEEeCH
Confidence 9999999999999754
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=3.9e-12 Score=118.81 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 271 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~ 271 (865)
.....++|||+|| ++|+++|+++|+.||.|.+|.|. .++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 378999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002920 272 WAVPKN 277 (865)
Q Consensus 272 ~a~~k~ 277 (865)
|+.++.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998764
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=9.3e-12 Score=114.52 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCC
Q 002920 402 DELQNTIFICNLPFDLD-----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 470 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~vt-----------eedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~ 470 (865)
..++++|+|+||....+ +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln-- 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD-- 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST--
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC--
Confidence 34578999999944332 5899999999999999955 443 379999999999999999999999
Q ss_pred CCCCeEecCeEEEEEEccCch
Q 002920 471 SGLGIFLKGRQLTVLKALDKK 491 (865)
Q Consensus 471 ~~~g~~l~Gr~L~V~~A~~k~ 491 (865)
|..|+|++|.|.||.++.
T Consensus 86 ---g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 ---GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp ---TCEETTEECEEEECCSCC
T ss_pred ---CCEECCcEEEEEEeCCCC
Confidence 999999999999998754
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=4.8e-12 Score=131.38 Aligned_cols=79 Identities=25% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 402 DELQNTIFICNLPFDL---------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 402 ~~~~~tLfV~NLP~~v---------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
....++|||+|||..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|..|+.+|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~---- 200 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS---- 200 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT----
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC----
Confidence 3456899999999998 7999999999999999999874 48999999999999999999999
Q ss_pred CCeEe------------cCeEEEEEEccCch
Q 002920 473 LGIFL------------KGRQLTVLKALDKK 491 (865)
Q Consensus 473 ~g~~l------------~Gr~L~V~~A~~k~ 491 (865)
|..| .|+.|.|.||....
T Consensus 201 -g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 201 -NQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp -TCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred -CCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9998 89999999998654
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.8e-11 Score=111.33 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCC
Q 002920 192 SKTQKWKLIIRNIPFKAK-----------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 260 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t-----------ee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng 260 (865)
.+...++|+|+||....+ +++|+++|++||.|..|.| .+. .++|||||+|.+.++|..|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456788999999944332 6899999999999999976 443 3799999999999999999999999
Q ss_pred ceeCCeeEEEEecCCCCcc
Q 002920 261 QKFGKRPIAVDWAVPKNIY 279 (865)
Q Consensus 261 ~~i~gr~l~V~~a~~k~~~ 279 (865)
..|.|++|.|.|+.++..+
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999876543
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=1.4e-11 Score=114.17 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhccCCeeEEEEeecCC----CCCCCceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 002920 404 LQNTIFICNLP--FDL---DNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 474 (865)
Q Consensus 404 ~~~tLfV~NLP--~~v---teedL~e~Fs~fG~V~sv~i~~d~~----~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g 474 (865)
++++|+|.||- .++ .+++|++.|++||.|.+|.|+.+.. ++.++|+|||+|.+.++|.+|+..|| |
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-----G 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----G 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-----T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-----C
Confidence 46899999993 223 3789999999999999999998864 35678999999999999999999999 9
Q ss_pred eEecCeEEEEEEccC
Q 002920 475 IFLKGRQLTVLKALD 489 (865)
Q Consensus 475 ~~l~Gr~L~V~~A~~ 489 (865)
..|+||+|.|.|+..
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999753
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=1e-11 Score=128.86 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 193 KTQKWKLIIRNIPFKA---------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~~---------tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
....++|||+|||..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999985 589999999999999999999999999
Q ss_pred ------------CCeeEEEEecCCCC
Q 002920 264 ------------GKRPIAVDWAVPKN 277 (865)
Q Consensus 264 ------------~gr~l~V~~a~~k~ 277 (865)
.|+.|.|.||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=2.3e-11 Score=110.50 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHhhcCCCceEEEEEcccCCC--CCccceEEEEECCHHHHHHHHHHhCCc
Q 002920 194 TQKWKLIIRNI--PFKAK--------VNEIKDMFSPVGLVWNVYIPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQ 261 (865)
Q Consensus 194 ~~~~~l~V~nL--p~~~t--------ee~L~~~F~~~G~I~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~lng~ 261 (865)
.+++.|+|.|+ |..+. +++|++.|++||.|.+|.|+++..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 43443 4789999999999999999988754 368999999999999999999999999
Q ss_pred eeCCeeEEEEecCC
Q 002920 262 KFGKRPIAVDWAVP 275 (865)
Q Consensus 262 ~i~gr~l~V~~a~~ 275 (865)
.|.||+|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=7.9e-12 Score=113.39 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 410 ICNLPFDLDNEEVKQRF------------SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 410 V~NLP~~vteedL~e~F------------s~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
+.|||..+++++|+++| ++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln-----g~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN-----NRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT-----TCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC-----CCEE
Confidence 45677777777777666 999999999999876 47899999999999999999999999 9999
Q ss_pred cCeEEEEEEc
Q 002920 478 KGRQLTVLKA 487 (865)
Q Consensus 478 ~Gr~L~V~~A 487 (865)
+||+|.|.|+
T Consensus 94 ~Gr~i~v~~s 103 (104)
T 1jmt_A 94 NGQPIHAELS 103 (104)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999986
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=9.9e-12 Score=112.74 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 201 IRNIPFKAKVNEIKDMF------------SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 201 V~nLp~~~tee~L~~~F------------~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
+.|||+.+++++|++.| ++||.|.+|.|+++. ++.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777666 999999999999876 47899999999999999999999999999999999
Q ss_pred EEEec
Q 002920 269 AVDWA 273 (865)
Q Consensus 269 ~V~~a 273 (865)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=5.6e-11 Score=110.12 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHhhcCCCceEEEEEcccCC----CCCccceEEEEECCHHHHHHHHHHhCCceeCC
Q 002920 195 QKWKLIIRNIPF--KA---KVNEIKDMFSPVGLVWNVYIPHNTD----TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 195 ~~~~l~V~nLp~--~~---tee~L~~~F~~~G~I~~v~i~~d~~----tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g 265 (865)
++++|+|.|+-. ++ .+++|++.|++||.|.+|.|+++.. ++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999842 22 3789999999999999999998864 45788999999999999999999999999999
Q ss_pred eeEEEEecC
Q 002920 266 RPIAVDWAV 274 (865)
Q Consensus 266 r~l~V~~a~ 274 (865)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.1e-10 Score=101.04 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEe
Q 002920 405 QNTIFICNLP-------FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 477 (865)
Q Consensus 405 ~~tLfV~NLP-------~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l 477 (865)
..+|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|..|+..++ + +
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-----~--~ 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-----G--L 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-----B--C
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-----C--C
Confidence 4577776654 468999999999999999999887 3689999999999999999999877 5 5
Q ss_pred cCeEEEEEEccCch
Q 002920 478 KGRQLTVLKALDKK 491 (865)
Q Consensus 478 ~Gr~L~V~~A~~k~ 491 (865)
.|++|.|.||.++.
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 79999999987653
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=3.7e-10 Score=103.92 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCC--CCC--------CHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 002920 403 ELQNTIFICNLP--FDL--------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 472 (865)
Q Consensus 403 ~~~~tLfV~NLP--~~v--------teedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~ 472 (865)
.++++|.|.||= .+. .+++|++.|++||.|.+|.|+.+. ++|+|||+|.+.++|.+|+..||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ln---- 76 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALH---- 76 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHT----
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhC----
Confidence 346799999993 221 246899999999999999886542 58999999999999999999999
Q ss_pred CCeEecCeEEEEEEccC
Q 002920 473 LGIFLKGRQLTVLKALD 489 (865)
Q Consensus 473 ~g~~l~Gr~L~V~~A~~ 489 (865)
|..|+||.|.|.|+..
T Consensus 77 -G~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 77 -GRWFAGKMITAAYVPL 92 (114)
T ss_dssp -TCEETTEECEEEEECH
T ss_pred -CCEECCEEEEEEEEcH
Confidence 9999999999999854
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.1e-10 Score=98.80 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=63.0
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 196 KWKLIIRNIP-------FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 196 ~~~l~V~nLp-------~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
..+|.|.-.+ ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|..||..++ .+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4456665443 468999999999999999999997 3589999999999999999999744 4789999
Q ss_pred EEEecCCCC
Q 002920 269 AVDWAVPKN 277 (865)
Q Consensus 269 ~V~~a~~k~ 277 (865)
.|.|+.++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999997664
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.03 E-value=3.4e-10 Score=104.16 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=63.6
Q ss_pred ccCeEEEeCC--CccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHH
Q 002920 556 SRTRLVIYNL--PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRV 633 (865)
Q Consensus 556 s~~~L~V~NL--P~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~ 633 (865)
++++|.|+|| |.+..++++...+.+.+.+.|. +||.|.+|.|+++ .++|||||+|.+.++|..|+..
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~----------~~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKN----------SAQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTT----------CTTCCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecC----------CCcEEEEEEECCHHHHHHHHHH
Confidence 4578999999 5554433333333333444444 5999999999865 3589999999999999999999
Q ss_pred hcCCCCCCCCCCceEEEEecc
Q 002920 634 LNNNPKTFGPEHRPIVEFAVD 654 (865)
Q Consensus 634 lng~p~~fg~~~rliV~fA~e 654 (865)
|||+ +|+ |+.|.|+|+.+
T Consensus 75 lnG~--~f~-GR~i~v~~~~~ 92 (114)
T 3s6e_A 75 LHGR--WFA-GKMITAAYVPL 92 (114)
T ss_dssp HTTC--EET-TEECEEEEECH
T ss_pred hCCC--EEC-CEEEEEEEEcH
Confidence 9998 776 46777999953
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=6.3e-10 Score=121.55 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec-
Q 002920 402 DELQNTIFICN--LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK- 478 (865)
Q Consensus 402 ~~~~~tLfV~N--LP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~- 478 (865)
..++.+|||+| |++.+|+++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|++.|| |..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~ 83 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVVD 83 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT-----TCEEEC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCcccc
Confidence 44568999999 588999999999999999999976542 57999999999999999999999 88773
Q ss_pred --Ce--EEEEEEcc
Q 002920 479 --GR--QLTVLKAL 488 (865)
Q Consensus 479 --Gr--~L~V~~A~ 488 (865)
|+ +|+|.|+.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 45 78888874
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=8.2e-10 Score=120.64 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee---CCe
Q 002920 192 SKTQKWKLIIRN--IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKR 266 (865)
Q Consensus 192 ~~~~~~~l~V~n--Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i---~gr 266 (865)
...+..+|||+| |++.+|+++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456778999999 588999999999999999999988854 479999999999999999999999988 345
Q ss_pred --eEEEEecC
Q 002920 267 --PIAVDWAV 274 (865)
Q Consensus 267 --~l~V~~a~ 274 (865)
+|+|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=7.3e-09 Score=89.63 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=64.0
Q ss_pred CCCCCEEEEcCCC----CCCCH----HHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 002920 402 DELQNTIFICNLP----FDLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 473 (865)
Q Consensus 402 ~~~~~tLfV~NLP----~~vte----edL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~ 473 (865)
+++..||+|..+| .++-+ .+|.+.|++||.|..++++.+. +||+|.+.++|.+|+. ||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn----- 69 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN----- 69 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT-----
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC-----
Confidence 4456799998877 23434 6899999999999999998653 8999999999999998 99
Q ss_pred CeEecCeEEEEEEccCc
Q 002920 474 GIFLKGRQLTVLKALDK 490 (865)
Q Consensus 474 g~~l~Gr~L~V~~A~~k 490 (865)
|..++||.|+|.++.+.
T Consensus 70 G~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 70 GKELLNRTITIALKSPS 86 (91)
T ss_dssp TCEETTEEEEEEECCCS
T ss_pred CeEeCCeEEEEEeCCCC
Confidence 99999999999998653
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.5e-09 Score=96.32 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCC-HHHHHHHHHHhcCCCCCCeEec
Q 002920 401 EDELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT-VEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~-vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s-~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
.-+.++.|||.||+.+ ++.++|+++|+.||.|.+|.++.+.. +|||.|.+ +.+|..|+..||.. +..|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~---~~~i~ 84 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG---NLQLR 84 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS---CBCTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC---CcEEe
Confidence 3456899999999999 99999999999999999999887642 59999999 89999999999633 89999
Q ss_pred CeEEEEEEccCc
Q 002920 479 GRQLTVLKALDK 490 (865)
Q Consensus 479 Gr~L~V~~A~~k 490 (865)
|..+.+....-.
T Consensus 85 g~~~~~evL~Ge 96 (121)
T 1owx_A 85 NKEVTWEVLEGE 96 (121)
T ss_dssp SSSEEEEECCHH
T ss_pred CcEEEEEECCCH
Confidence 999988876543
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=6.2e-08 Score=83.83 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCC
Q 002920 194 TQKWKLIIRNIPF----KAKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 265 (865)
Q Consensus 194 ~~~~~l~V~nLp~----~~te----e~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~g 265 (865)
++..+|+|.-+|. .+-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+||. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4556888887762 3333 5789999999999999998863 8999999999999998 99999999
Q ss_pred eeEEEEecCCCC
Q 002920 266 RPIAVDWAVPKN 277 (865)
Q Consensus 266 r~l~V~~a~~k~ 277 (865)
+.|+|.++.+.-
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999987653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=8.3e-08 Score=88.46 Aligned_cols=76 Identities=9% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECC-HHHHHHHHHHhC--CceeCCee
Q 002920 192 SKTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC-KRDAESAIQKFN--GQKFGKRP 267 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~-~e~A~~Al~~ln--g~~i~gr~ 267 (865)
.......|||+||++. ++.++|+++|+.||.|..|.+.++.. .|||.|.+ ..+|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999988754 49999999 899999999995 77889998
Q ss_pred EEEEec
Q 002920 268 IAVDWA 273 (865)
Q Consensus 268 l~V~~a 273 (865)
+.+...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888765
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=7.1e-08 Score=83.84 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCCCCEEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCC
Q 002920 401 EDELQNTIFICNLPFD-----LDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTS 471 (865)
Q Consensus 401 ~~~~~~tLfV~NLP~~-----vte----edL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~ 471 (865)
.+++..||+|..++.. +.+ .+|.+.|+.||.|..++++.+. +||+|.+.++|.+||. ||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld--- 78 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD--- 78 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG---
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC---
Confidence 3456789999988743 333 5789999999999999998664 9999999999999998 99
Q ss_pred CCCeEecCeEEEEEEc
Q 002920 472 GLGIFLKGRQLTVLKA 487 (865)
Q Consensus 472 ~~g~~l~Gr~L~V~~A 487 (865)
|..++||.|.|.+-
T Consensus 79 --G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 79 --GMKVKGRAVKISGP 92 (95)
T ss_dssp --GSEETTEEEEEECC
T ss_pred --CeeeCCeEEEEecc
Confidence 99999999999874
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.6e-07 Score=96.89 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CEEEEcCCC-----CCCCHHHHHHHhhccCCeeEEEEeecCC----CCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeE
Q 002920 406 NTIFICNLP-----FDLDNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 476 (865)
Q Consensus 406 ~tLfV~NLP-----~~vteedL~e~Fs~fG~V~sv~i~~d~~----~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~ 476 (865)
..+.+.|+- .+-.+++|++.|++||.|.++.|+.+.. ++.++|++||+|.+.++|.+|+..|| |..
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-----gr~ 199 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----GRW 199 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-----Cce
Confidence 456666652 2345789999999999999999986653 44889999999999999999999999 999
Q ss_pred ecCeEEEEEEcc
Q 002920 477 LKGRQLTVLKAL 488 (865)
Q Consensus 477 l~Gr~L~V~~A~ 488 (865)
|+||+|.|.|+.
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999999975
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=4.1e-07 Score=93.78 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCHHHHHHhhcCCCceEEEEEcccC----CCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 002920 208 AKVNEIKDMFSPVGLVWNVYIPHNT----DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 274 (865)
Q Consensus 208 ~tee~L~~~F~~~G~I~~v~i~~d~----~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V~~a~ 274 (865)
-.+++|.+.|+.||.|.+|.|+++. .++.++|++||+|.+.++|.+|+..|||..|.||.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999998554 345899999999999999999999999999999999999974
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=2.7e-07 Score=80.23 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCcee
Q 002920 193 KTQKWKLIIRNIPFK-----AKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 263 (865)
Q Consensus 193 ~~~~~~l~V~nLp~~-----~te----e~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i 263 (865)
.++..+|+|.-++.. +-. .+|.+.|..||.|..+++..+. +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345679999988743 222 4688999999999999998864 9999999999999998 999999
Q ss_pred CCeeEEEEec
Q 002920 264 GKRPIAVDWA 273 (865)
Q Consensus 264 ~gr~l~V~~a 273 (865)
.||.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.8e-05 Score=70.09 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAF-----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~f-----G~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
..++|-|.|||..+++..|+.++.+| |.|..+.++.| -+-|+|+|.+...|-+|.-+|+ |..|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~-----G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILN-----GSQFQ 88 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHS-----SEEET
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcC-----Ceeec
Confidence 35799999999999999999999999 99999987765 3579999999999999999999 99999
Q ss_pred CeEEEEEEc
Q 002920 479 GRQLTVLKA 487 (865)
Q Consensus 479 Gr~L~V~~A 487 (865)
||+|.|.-.
T Consensus 89 gr~Lr~gTv 97 (117)
T 2l9w_A 89 GKVIRSGTI 97 (117)
T ss_dssp TEEEEEECH
T ss_pred CeEEEecCH
Confidence 999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=6.5e-05 Score=66.53 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-----CceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPV-----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 268 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l 268 (865)
...++|-+-|||..++...|+.++.++ |.|..|.+..|- |=|+|+|.+...|.+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 999999998764 239999999999999999999999999999
Q ss_pred EEEe
Q 002920 269 AVDW 272 (865)
Q Consensus 269 ~V~~ 272 (865)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9974
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00023 Score=62.57 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhc-----cCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhc
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGS-----IGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 173 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~-----~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~ln 173 (865)
...++|.|.|||..+.++-|.-+|+. -|+|.+|... + +-|+|+|.+.+.|++.|+ -.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--------------~---~~AvItF~d~~va~rVL~-k~ 67 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--------------G---CGGVLTFREPADAERVLA-QA 67 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--------------T---TEEEEEESSHHHHHHHHT-CS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--------------C---CcEEEEEcChHHHHHHhc-CC
Confidence 35679999999999999999999986 2599999882 2 349999999999999887 44
Q ss_pred CCccCCeEEEEeccCCCCCCCCCcEEEEcCCCCCCC
Q 002920 174 QKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAK 209 (865)
Q Consensus 174 g~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~~~t 209 (865)
...|+|..|.|.+. .+...++|++.+||+.++
T Consensus 68 ~H~L~~~~LsV~P~----~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 68 DHELHGAQLSLRPA----PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CCBSSSSBCEEEEC----CCCCCCCCCCCSCCCCCC
T ss_pred cceecCeEEEEEcC----CCCCcceEeeecCCCCCC
Confidence 67788889999875 344567899999998765
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00055 Score=60.24 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-----cCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSA-----FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~-----fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
.+.+|.|.|||..+.++.|.-+|+. =|.|..+... . +.|+|+|.+...|++.|..-. +.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------~-~~AvItF~d~~va~rVL~k~~------H~L~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------G-CGGVLTFREPADAERVLAQAD------HELH 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------T-TEEEEEESSHHHHHHHHTCSC------CBSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------C-CcEEEEEcChHHHHHHhcCCc------ceec
Confidence 3579999999999999999999986 2678877653 1 679999999999999997643 6888
Q ss_pred CeEEEEEEccCc
Q 002920 479 GRQLTVLKALDK 490 (865)
Q Consensus 479 Gr~L~V~~A~~k 490 (865)
|..|.|....++
T Consensus 73 ~~~LsV~P~~~~ 84 (104)
T 2dhx_A 73 GAQLSLRPAPPR 84 (104)
T ss_dssp SSBCEEEECCCC
T ss_pred CeEEEEEcCCCC
Confidence 999999886544
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.19 E-value=0.0011 Score=57.63 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=62.9
Q ss_pred CeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 558 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 558 ~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
+.|.||+||+.+|++++.+.+. +.+.+..........+ .....-.-|+|.|.+.+++..-.+.++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~---------~~~~~d~~~fv~G~~s----~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ---------PMPEHDYFEFFSNDTS----LYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC---------SCCCEEEEEEEESCCS----STTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhc---------CcccceEEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999998 5777776666543222 22334468999999999999999999997
Q ss_pred CCCC----CCCCceEEEEec
Q 002920 638 PKTF----GPEHRPIVEFAV 653 (865)
Q Consensus 638 p~~f----g~~~rliV~fA~ 653 (865)
+| |...+++|+||.
T Consensus 69 --~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 69 --VFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp --EEECTTCCEEECEEEECS
T ss_pred --EEEcCCCCEeeeEEEEcC
Confidence 55 333456799996
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00089 Score=59.16 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=62.7
Q ss_pred CEEEEcCCCCCC-C----HHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecCe
Q 002920 406 NTIFICNLPFDL-D----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 480 (865)
Q Consensus 406 ~tLfV~NLP~~v-t----eedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~Gr 480 (865)
++|+|.||+.++ . .+.++++|..|+++........ -.-..|.|.++++|.+|...|+ +..+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh-----~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLH-----KTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTST-----TSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhc-----cceecCc
Confidence 689999999876 2 2678999999999988766533 3357999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 002920 481 QLTVLKALD 489 (865)
Q Consensus 481 ~L~V~~A~~ 489 (865)
.|.|-++++
T Consensus 75 ~~r~YFgq~ 83 (104)
T 1wey_A 75 EMKLYFAQT 83 (104)
T ss_dssp ECEEECCCC
T ss_pred eeEEEecCC
Confidence 999999873
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.83 E-value=0.0027 Score=55.13 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 192 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 192 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
.+...+.++| ++|..+...||.++|+.||.|. |..+-|. -|||.|.+++.|..|+..++
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445567777 9999999999999999999766 7776653 49999999999999999763
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.66 E-value=0.0057 Score=54.03 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 002920 196 KWKLIIRNIPFKA-K----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 270 (865)
Q Consensus 196 ~~~l~V~nLp~~~-t----ee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~lng~~i~gr~l~V 270 (865)
.++|+|.||+..+ . .+.++.+|..|+++......+. -.-..|.|.++++|.+|-..|++..+.|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 2 2578999999999887776653 224799999999999999999999999999999
Q ss_pred EecCCC
Q 002920 271 DWAVPK 276 (865)
Q Consensus 271 ~~a~~k 276 (865)
-++++-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999754
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.45 E-value=0.01 Score=51.53 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=56.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC--CCceEEEEeCCHHHHHHHHHHhcCCCCCCeEec
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR--PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 478 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~--~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~ 478 (865)
+.|.|++||+.+|++++.+.++.+..+.....+....+.. ...-|||.|.+.+++......++ |..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~-----g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-----GYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT-----TCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CcEEE
Confidence 4799999999999999999999999888877665543322 34569999999999999999999 77764
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0036 Score=54.57 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 197 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 197 ~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
+.++| ++|..+...||..+|+.||.|. |..+-|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999999655 7776653 49999999999999999764
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.021 Score=51.82 Aligned_cols=71 Identities=8% Similarity=0.013 Sum_probs=56.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccC
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 178 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~ 178 (865)
...+.|.|-+.|..... .|...|+.||+|++...+ .+ ...-+|.|.+..+|++||. .||..|.
T Consensus 22 ~~~~wVtVFGFp~~~~~-~VL~~F~~~G~Iv~~~~~-------------~~--~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASAS-YILLQFAQYGNILKHVMS-------------NT--GNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGGHH-HHHHHHHTTSCEEEEEEC-------------SS--SSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHhhCcEEEeccC-------------CC--CCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 44678999999999755 577899999999988872 12 2468999999999999999 8999998
Q ss_pred CeE-EEEec
Q 002920 179 GGT-VWARQ 186 (865)
Q Consensus 179 G~~-i~v~~ 186 (865)
|.. |-|.+
T Consensus 85 g~~mIGV~p 93 (119)
T 1wwh_A 85 ESIMIGVKP 93 (119)
T ss_dssp TTEECEEEE
T ss_pred CCEEEEEEE
Confidence 643 44443
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.85 E-value=0.023 Score=49.38 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=45.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
...++| ++|.++.-.||.++|+.||.| .|+-+-| ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 356777 999999999999999999954 3444433 379999999999999998773
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.73 E-value=0.023 Score=49.57 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCC-C-CccceEEEEECCHHHHHHHHHHhCCceeC---C--ee
Q 002920 195 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-G-LSKGFAFVKFTCKRDAESAIQKFNGQKFG---K--RP 267 (865)
Q Consensus 195 ~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t-g-~~kG~afV~F~~~e~A~~Al~~lng~~i~---g--r~ 267 (865)
.+-+|.|+.||+.+||+++.+.++.+-.+..........+ + ..-.-|||.|.+.++.....+.++|..|. | -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3458999999999999999988887655432222111111 1 12245999999999999999999999882 2 24
Q ss_pred EEEEec
Q 002920 268 IAVDWA 273 (865)
Q Consensus 268 l~V~~a 273 (865)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 456665
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.58 E-value=0.054 Score=49.14 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC-eEE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-RQL 482 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G-r~L 482 (865)
..+.|.|.++|... -..|..+|+.||.|...... ....+-.|.|.+..+|++||.. | |..|+| -.|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-N-----G~ii~g~~mI 89 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-D-----GRIFGESIMI 89 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-T-----TCEETTTEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-C-----CeEecCCEEE
Confidence 35789999999885 66788899999999987641 2357999999999999999965 7 899985 667
Q ss_pred EEEEccCchh
Q 002920 483 TVLKALDKKL 492 (865)
Q Consensus 483 ~V~~A~~k~~ 492 (865)
-|.+..++..
T Consensus 90 GV~p~~d~~v 99 (119)
T 1wwh_A 90 GVKPCIDKNV 99 (119)
T ss_dssp EEEECCCHHH
T ss_pred EEEECCCHHH
Confidence 7887665543
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.10 E-value=0.025 Score=49.36 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=44.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhc
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 468 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln 468 (865)
..++| ++|.++.-.||.++|++||. ..|.-+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999999993 34555533 379999999999999999874
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.99 E-value=0.076 Score=46.35 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC--CCceEEEEeCCHHHHHHHHHHhcCCCCCCeEecC----
Q 002920 406 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR--PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG---- 479 (865)
Q Consensus 406 ~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~--~kG~aFV~F~s~e~A~~Al~~ln~~~~~g~~l~G---- 479 (865)
-.|.|+.||+.+|++++.+.++.+-.+.....+....+.. .-..|||.|.+.++........+ |..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~-----g~~F~D~kg~ 84 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD-----GYIFLDSKGL 84 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST-----TEEEECTTCC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CcEEEeCCCC
Confidence 4799999999999999999988776655543332222211 23468999999999999999999 877732
Q ss_pred -eEEEEEEcc
Q 002920 480 -RQLTVLKAL 488 (865)
Q Consensus 480 -r~L~V~~A~ 488 (865)
-+..|.+|.
T Consensus 85 ~~~a~VE~AP 94 (97)
T 2l08_A 85 EYPAVVEFAP 94 (97)
T ss_dssp EEEEEEEECC
T ss_pred EeeeEEEecC
Confidence 244556553
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.82 E-value=0.044 Score=50.44 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC-------------CC-CCCceEEEEeCCHHHHHHHHHHhcCC
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-------------TK-RPKGTGFLKFKTVEAATAAVSASKTT 470 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~-------------~g-~~kG~aFV~F~s~e~A~~Al~~ln~~ 470 (865)
...|.|.+.|.+... .|.++|+.||.|..-.-+.+.. .. ....+..|+|++..+|.+||. .|
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N-- 82 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN-- 82 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT--
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC--
Confidence 357999999876554 5778899999987721111000 00 125678999999999999995 46
Q ss_pred CCCCeEecCeEEEEEEcc
Q 002920 471 SGLGIFLKGRQLTVLKAL 488 (865)
Q Consensus 471 ~~~g~~l~Gr~L~V~~A~ 488 (865)
|..|+|..|-|.+..
T Consensus 83 ---G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 ---GAVFNGVLLGVIPYT 97 (132)
T ss_dssp ---TCEETTEECEEEECC
T ss_pred ---CeEeCcEEEEEEECC
Confidence 899999989998875
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.17 E-value=0.12 Score=47.64 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=53.9
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhccCCeEEE-EeeCCch--hhhhccccc-CC-CccceEEEEECCHHHHHHHHHHhcC
Q 002920 100 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSV-TYPLPKE--ELEQHGLAQ-EG-CKMDASAVLYTTVKSACASVALLHQ 174 (865)
Q Consensus 100 ~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~~k~--~~~~~~~~~-~g-~~~G~AfV~F~s~e~A~~Al~~lng 174 (865)
....|.|=+.|.+.... +.+.|+.||.|++- .+..+.. .+....... .+ .......|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34578999998888775 55799999998762 2211100 000000000 00 023567999999999999999 899
Q ss_pred CccCCeEEEEec
Q 002920 175 KEIKGGTVWARQ 186 (865)
Q Consensus 175 ~~i~G~~i~v~~ 186 (865)
..|.|..|-|.+
T Consensus 84 ~ii~G~mIGV~P 95 (132)
T 3p3d_A 84 AVFNGVLLGVIP 95 (132)
T ss_dssp CEETTEECEEEE
T ss_pred eEeCcEEEEEEE
Confidence 999998666644
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.06 E-value=0.04 Score=62.07 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=42.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhccCCeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHH
Q 002920 99 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVA 170 (865)
Q Consensus 99 ~~~rtVfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~ 170 (865)
...|+|||. .|..+++.+|.++|+.||.|.++.+-.+ .| -||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----------~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----------FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----------SS---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----------CC---eEEEEEeCCHHHHHHHHh
Confidence 457899998 7999999999999999999999988322 22 699999999999987655
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.60 E-value=0.09 Score=59.23 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002920 405 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 466 (865)
Q Consensus 405 ~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ 466 (865)
.++|||. .|..+++.+|.++|++||.|.++....+ ..-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHhc
Confidence 3799997 7999999999999999999999855432 236999999999998876544
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.68 E-value=5.8 Score=45.31 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCceEEEEEcccCCCCCccceEEEEECCHHHHHHHHHHhC
Q 002920 194 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 259 (865)
Q Consensus 194 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ln 259 (865)
.....++|+ +|..+...+|.++|+.||.|. |+.+-+ ..|||.|.+.+.|..++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 345667776 999999999999999999654 665543 259999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.22 E-value=13 Score=42.33 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=46.3
Q ss_pred CeEEEeCCCccCCHHHHHHHHHHHHHhhhccCCCCeEEEEEeecccCCccCCCCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 002920 558 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 637 (865)
Q Consensus 558 ~~L~V~NLP~~vtee~L~~lF~~~v~~~~~~~~G~I~~v~i~~d~~~g~~~~~~~srG~aFVeF~~~e~A~~Al~~lng~ 637 (865)
..++|+ +|..+...+|.++|+ +||.| .|+.+ ....|||.|.+++.|..++..++.+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs---------~fg~v-~V~wi-------------ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFS---------AFGNI-QISWI-------------DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGG---------GGCCC-EEEEC-------------SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred cEEEEe-CCCCCCHHHHHHHHH---------hcCCE-EEEEE-------------cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 457776 899999999999998 58854 45544 2457999999999999999999876
Q ss_pred C
Q 002920 638 P 638 (865)
Q Consensus 638 p 638 (865)
|
T Consensus 497 ~ 497 (507)
T 3d45_A 497 E 497 (507)
T ss_dssp S
T ss_pred C
Confidence 4
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.42 E-value=2.5e+02 Score=23.51 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCCCceEEEEeCCHHHHHHHHHHhcCCCCC--CeEecCeE
Q 002920 404 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL--GIFLKGRQ 481 (865)
Q Consensus 404 ~~~tLfV~NLP~~vteedL~e~Fs~fG~V~sv~i~~d~~~g~~kG~aFV~F~s~e~A~~Al~~ln~~~~~--g~~l~Gr~ 481 (865)
..|-|-|-|+|..+-..++.-.....|---+|..+ -|.|+|.|.+.++..-|+..|-+.... ...+.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 46889999999999999988888888877777654 467999999999999999876322211 24567877
Q ss_pred EEEEEccCchh
Q 002920 482 LTVLKALDKKL 492 (865)
Q Consensus 482 L~V~~A~~k~~ 492 (865)
..|--..+..+
T Consensus 83 cdvistipede 93 (129)
T 4eyt_A 83 CDVISTIPEDE 93 (129)
T ss_dssp EEEECCCCHHH
T ss_pred eeeeecCCchh
Confidence 77766555433
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.82 E-value=3.2e+02 Score=22.90 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.1
Q ss_pred CeEEEEeeCCchhhhhcccccCCCccceEEEEECCHHHHHHHHHHhcCCccCCeEEEEeccCCCCCCCCCcEEEEcCCCC
Q 002920 127 TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 206 (865)
Q Consensus 127 ~V~~v~i~~~k~~~~~~~~~~~g~~~G~AfV~F~s~e~A~~Al~~lng~~i~G~~i~v~~~~~~~~~~~~~~l~V~nLp~ 206 (865)
.|.+|.++. ...||-||++.-.++...+|....|. +=||++
T Consensus 39 ~i~~v~vP~--------------~fPGYVfVe~~~~~~~~~~I~~t~gV----------------------~gfvg~--- 79 (92)
T 3lpe_A 39 DVYSILASE--------------SLKGYVLVEAETKGDVEELIKGMPRV----------------------RGIVPG--- 79 (92)
T ss_dssp CEEEEEECT--------------TSTTEEEEEESSHHHHHHHHTTCTTE----------------------EEECSS---
T ss_pred cEEEEEEec--------------ccCCEEEEEEecchhHHHHHHCCCCc----------------------eEeCCC---
Confidence 477777742 26899999999999888877644332 224444
Q ss_pred CCCHHHHHHhhc
Q 002920 207 KAKVNEIKDMFS 218 (865)
Q Consensus 207 ~~tee~L~~~F~ 218 (865)
.++++++..++.
T Consensus 80 pl~~~Ev~~il~ 91 (92)
T 3lpe_A 80 TIAIEEIEPLLT 91 (92)
T ss_dssp CCCHHHHHHHHC
T ss_pred CCCHHHHHHHhC
Confidence 678888887765
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.88 E-value=1.2e+02 Score=29.06 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=39.4
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHhh--cCCCceEEEEEcccCCCCCccceEEEEECCHHH-HHHHHH
Q 002920 197 WKLIIRNIPF-K--------AKVNEIKDMF--SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD-AESAIQ 256 (865)
Q Consensus 197 ~~l~V~nLp~-~--------~tee~L~~~F--~~~G~I~~v~i~~d~~tg~~kG~afV~F~~~e~-A~~Al~ 256 (865)
+.++|-|+|. . .....|.+.| +.|.++. |+.+..+. | +.|+|.|.|.+.-. -..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~-G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL-G-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS-B-EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC-C-CceeEEEEecCChHHHHHHHH
Confidence 4788889887 2 3457899977 9999877 55545442 3 78999999985443 334444
Done!