Query 002921
Match_columns 865
No_of_seqs 283 out of 2981
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 13:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1E-112 3E-117 855.5 65.1 839 3-857 1-852 (885)
2 KOG2171 Karyopherin (importin) 100.0 1.8E-75 3.9E-80 630.9 73.8 791 15-863 4-1054(1075)
3 KOG1241 Karyopherin (importin) 100.0 1.6E-62 3.6E-67 503.3 61.1 741 16-830 2-818 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 1.6E-50 3.5E-55 400.7 65.3 738 16-828 5-814 (858)
5 KOG1991 Nuclear transport rece 100.0 1.1E-46 2.3E-51 399.6 66.3 774 14-844 3-871 (1010)
6 KOG2274 Predicted importin 9 [ 100.0 2.7E-36 5.8E-41 316.5 60.5 741 15-824 4-835 (1005)
7 KOG2171 Karyopherin (importin) 100.0 3.2E-35 7E-40 319.4 67.9 711 14-806 204-1030(1075)
8 KOG1992 Nuclear export recepto 100.0 5.8E-36 1.2E-40 310.6 56.3 752 13-827 3-849 (960)
9 KOG1993 Nuclear transport rece 100.0 9E-36 2E-40 307.5 53.2 767 17-843 2-884 (978)
10 COG5656 SXM1 Importin, protein 100.0 9.9E-33 2.1E-37 283.0 63.3 751 15-825 3-851 (970)
11 KOG2023 Nuclear transport rece 100.0 1.4E-34 3E-39 293.0 46.1 697 49-842 11-794 (885)
12 KOG1241 Karyopherin (importin) 100.0 4.4E-29 9.5E-34 258.0 60.1 689 13-789 32-819 (859)
13 KOG1824 TATA-binding protein-i 100.0 1.5E-28 3.3E-33 258.5 59.4 723 62-845 16-1058(1233)
14 COG5215 KAP95 Karyopherin (imp 100.0 1.2E-23 2.7E-28 210.2 60.0 639 62-790 105-819 (858)
15 KOG1824 TATA-binding protein-i 100.0 2E-22 4.3E-27 213.0 66.5 460 17-532 48-623 (1233)
16 COG5657 CSE1 CAS/CSE protein i 100.0 6.6E-24 1.4E-28 224.9 48.0 753 17-830 6-841 (947)
17 KOG0213 Splicing factor 3b, su 99.9 8.6E-22 1.9E-26 202.6 57.4 745 8-833 356-1152(1172)
18 KOG2021 Nuclear mRNA export fa 99.9 6.9E-22 1.5E-26 204.1 50.9 636 15-713 3-785 (980)
19 KOG2022 Nuclear transport rece 99.9 1.5E-16 3.3E-21 168.6 69.8 714 10-785 2-871 (982)
20 COG5181 HSH155 U2 snRNP splice 99.9 4.3E-19 9.3E-24 179.4 45.2 690 15-780 168-911 (975)
21 KOG1991 Nuclear transport rece 99.9 3.8E-17 8.2E-22 175.8 60.8 665 104-830 15-807 (1010)
22 COG5101 CRM1 Importin beta-rel 99.9 1.1E-16 2.4E-21 162.7 59.5 785 13-848 12-1036(1053)
23 PLN03200 cellulose synthase-in 99.9 1.9E-18 4.1E-23 205.0 54.1 719 26-827 69-864 (2102)
24 KOG0213 Splicing factor 3b, su 99.9 3.1E-18 6.8E-23 176.8 44.3 596 140-843 372-1044(1172)
25 PLN03200 cellulose synthase-in 99.9 3.7E-17 7.9E-22 194.3 56.6 698 14-826 12-767 (2102)
26 KOG0915 Uncharacterized conser 99.9 6.6E-17 1.4E-21 180.4 47.0 552 223-845 820-1407(1702)
27 KOG0915 Uncharacterized conser 99.8 4.9E-15 1.1E-19 165.8 50.5 607 62-757 829-1489(1702)
28 KOG1242 Protein containing ada 99.8 7E-16 1.5E-20 159.5 38.2 495 103-685 27-557 (569)
29 KOG2081 Nuclear transport regu 99.8 8.1E-15 1.8E-19 149.3 38.8 465 34-553 2-540 (559)
30 KOG1242 Protein containing ada 99.8 6.9E-15 1.5E-19 152.2 37.1 477 62-617 67-546 (569)
31 COG5181 HSH155 U2 snRNP splice 99.7 5.8E-14 1.3E-18 142.8 36.8 591 105-824 258-871 (975)
32 KOG0212 Uncharacterized conser 99.7 5.4E-14 1.2E-18 142.1 35.1 410 97-573 4-425 (675)
33 KOG0212 Uncharacterized conser 99.7 3E-13 6.5E-18 136.8 38.7 473 184-785 4-484 (675)
34 PF08506 Cse1: Cse1; InterPro 99.7 9.7E-15 2.1E-19 149.9 21.0 276 196-503 56-370 (370)
35 PF01602 Adaptin_N: Adaptin N 99.6 8.6E-12 1.9E-16 140.8 46.2 505 15-689 7-521 (526)
36 COG5656 SXM1 Importin, protein 99.6 1.9E-09 4.1E-14 113.2 57.9 685 94-843 5-827 (970)
37 PF01602 Adaptin_N: Adaptin N 99.6 4.7E-11 1E-15 134.8 49.3 509 91-735 2-522 (526)
38 KOG0166 Karyopherin (importin) 99.6 6.9E-14 1.5E-18 144.3 22.0 323 388-782 108-437 (514)
39 PTZ00429 beta-adaptin; Provisi 99.6 1.4E-10 3E-15 129.5 47.7 409 17-514 70-513 (746)
40 PTZ00429 beta-adaptin; Provisi 99.6 4.2E-10 9E-15 125.7 51.2 431 22-551 39-473 (746)
41 KOG1248 Uncharacterized conser 99.6 1.4E-08 3.1E-13 113.1 61.2 703 6-857 130-897 (1176)
42 KOG1992 Nuclear export recepto 99.6 3.5E-09 7.7E-14 112.7 52.6 622 15-736 87-792 (960)
43 KOG0211 Protein phosphatase 2A 99.6 2.3E-11 5E-16 133.8 36.0 567 62-739 93-666 (759)
44 KOG1943 Beta-tubulin folding c 99.5 1.2E-09 2.6E-14 120.0 45.5 533 89-710 337-900 (1133)
45 KOG0166 Karyopherin (importin) 99.5 9.8E-12 2.1E-16 128.6 28.0 358 95-552 68-439 (514)
46 KOG2274 Predicted importin 9 [ 99.4 3.5E-07 7.6E-12 99.0 55.9 696 54-835 7-792 (1005)
47 KOG0211 Protein phosphatase 2A 99.4 9E-10 1.9E-14 121.5 36.7 569 97-780 86-663 (759)
48 PF10508 Proteasom_PSMB: Prote 99.4 1.5E-09 3.2E-14 118.8 36.6 398 98-550 43-463 (503)
49 PRK13800 putative oxidoreducta 99.4 1.4E-10 3E-15 136.5 28.6 273 96-505 624-896 (897)
50 PRK09687 putative lyase; Provi 99.3 3.5E-10 7.7E-15 112.7 24.3 252 133-504 25-278 (280)
51 KOG1248 Uncharacterized conser 99.3 4.3E-06 9.3E-11 94.0 57.6 264 475-760 650-922 (1176)
52 KOG1060 Vesicle coat complex A 99.3 5.9E-08 1.3E-12 103.0 38.3 476 184-788 39-540 (968)
53 PRK09687 putative lyase; Provi 99.3 8.1E-10 1.7E-14 110.2 23.1 252 182-545 25-278 (280)
54 PRK13800 putative oxidoreducta 99.3 1E-09 2.2E-14 129.2 27.9 273 133-545 623-895 (897)
55 COG5064 SRP1 Karyopherin (impo 99.3 3.5E-11 7.5E-16 114.3 12.2 356 391-780 73-442 (526)
56 KOG1060 Vesicle coat complex A 99.3 2.6E-07 5.6E-12 98.3 40.9 494 97-698 39-539 (968)
57 KOG2020 Nuclear transport rece 99.3 6E-06 1.3E-10 94.6 54.3 238 10-253 5-261 (1041)
58 PF10508 Proteasom_PSMB: Prote 99.2 9.1E-08 2E-12 104.8 36.9 315 136-511 43-369 (503)
59 KOG1020 Sister chromatid cohes 99.2 1.4E-05 3E-10 91.8 52.8 164 110-289 794-958 (1692)
60 COG5064 SRP1 Karyopherin (impo 99.2 6.4E-10 1.4E-14 105.9 15.2 353 132-549 72-443 (526)
61 KOG1993 Nuclear transport rece 99.1 2.6E-05 5.6E-10 83.7 48.8 388 406-827 411-816 (978)
62 KOG1943 Beta-tubulin folding c 99.1 2.5E-05 5.3E-10 87.0 49.3 444 61-566 351-855 (1133)
63 KOG1062 Vesicle coat complex A 99.1 3.4E-06 7.4E-11 90.6 39.9 303 133-523 109-429 (866)
64 KOG0392 SNF2 family DNA-depend 99.1 4.3E-06 9.3E-11 93.8 41.8 222 62-292 88-326 (1549)
65 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.7E-09 3.8E-14 87.1 10.9 94 408-507 2-95 (97)
66 KOG4224 Armadillo repeat prote 99.0 5.9E-09 1.3E-13 100.4 15.4 377 367-784 101-496 (550)
67 KOG1059 Vesicle coat complex A 99.0 7.5E-05 1.6E-09 79.5 44.9 249 186-508 115-365 (877)
68 PF03378 CAS_CSE1: CAS/CSE pro 99.0 5.6E-08 1.2E-12 102.7 22.3 305 511-842 17-346 (435)
69 KOG1059 Vesicle coat complex A 99.0 5.2E-06 1.1E-10 87.9 35.8 190 86-292 137-366 (877)
70 KOG0414 Chromosome condensatio 99.0 0.00017 3.6E-09 81.5 52.4 106 98-212 317-431 (1251)
71 PF03810 IBN_N: Importin-beta 99.0 2.6E-09 5.6E-14 84.3 8.6 67 36-103 1-76 (77)
72 KOG1020 Sister chromatid cohes 98.9 0.00031 6.6E-09 81.3 56.4 142 93-248 816-958 (1692)
73 KOG1062 Vesicle coat complex A 98.9 1.4E-05 2.9E-10 86.1 35.8 196 86-292 135-380 (866)
74 COG5240 SEC21 Vesicle coat com 98.9 5.7E-05 1.2E-09 78.1 37.3 271 368-691 281-554 (898)
75 KOG1061 Vesicle coat complex A 98.9 8.2E-06 1.8E-10 87.9 32.5 418 18-506 52-487 (734)
76 KOG4224 Armadillo repeat prote 98.9 4E-07 8.6E-12 88.1 20.2 339 368-740 143-496 (550)
77 KOG1240 Protein kinase contain 98.8 6.2E-07 1.3E-11 100.0 23.7 294 132-510 423-727 (1431)
78 PF12460 MMS19_C: RNAPII trans 98.8 3.6E-06 7.8E-11 90.5 28.8 322 406-756 57-413 (415)
79 KOG4535 HEAT and armadillo rep 98.8 8.1E-05 1.7E-09 75.3 34.0 458 104-619 7-586 (728)
80 COG5240 SEC21 Vesicle coat com 98.8 1.8E-05 3.8E-10 81.6 29.0 284 177-507 261-554 (898)
81 PF12460 MMS19_C: RNAPII trans 98.7 3.1E-05 6.8E-10 83.3 32.4 366 436-843 2-414 (415)
82 KOG4535 HEAT and armadillo rep 98.7 7.3E-05 1.6E-09 75.6 30.9 554 142-761 7-625 (728)
83 PF12348 CLASP_N: CLASP N term 98.7 6.2E-07 1.3E-11 88.4 16.7 179 363-554 19-211 (228)
84 PF12348 CLASP_N: CLASP N term 98.7 1.6E-06 3.5E-11 85.4 18.8 184 61-257 17-213 (228)
85 KOG1240 Protein kinase contain 98.6 6.1E-06 1.3E-10 92.4 23.0 300 390-740 423-728 (1431)
86 PF12755 Vac14_Fab1_bd: Vacuol 98.6 1.1E-06 2.3E-11 71.1 11.2 86 449-539 2-87 (97)
87 KOG2259 Uncharacterized conser 98.5 0.0011 2.5E-08 70.2 34.8 321 132-571 199-527 (823)
88 KOG2032 Uncharacterized conser 98.5 0.00021 4.7E-09 73.0 28.6 307 389-737 217-531 (533)
89 KOG1061 Vesicle coat complex A 98.5 0.00022 4.9E-09 77.2 30.1 457 20-549 18-486 (734)
90 KOG2259 Uncharacterized conser 98.5 0.00021 4.6E-09 75.4 27.6 297 223-598 200-515 (823)
91 PF13513 HEAT_EZ: HEAT-like re 98.5 2.7E-07 5.8E-12 66.8 4.8 55 406-460 1-55 (55)
92 COG5096 Vesicle coat complex, 98.4 0.0044 9.6E-08 68.9 38.6 124 367-509 71-196 (757)
93 PF03378 CAS_CSE1: CAS/CSE pro 98.4 0.00021 4.5E-09 76.0 27.6 307 472-803 19-349 (435)
94 KOG1078 Vesicle coat complex C 98.4 0.0034 7.4E-08 68.2 35.7 496 101-736 29-531 (865)
95 PF08389 Xpo1: Exportin 1-like 98.4 5.8E-07 1.2E-11 81.9 7.0 136 106-245 1-148 (148)
96 PF05804 KAP: Kinesin-associat 98.4 0.00033 7.1E-09 78.2 28.4 373 237-694 265-651 (708)
97 cd00020 ARM Armadillo/beta-cat 98.3 1.5E-06 3.2E-11 75.9 8.0 110 390-507 8-119 (120)
98 KOG1058 Vesicle coat complex C 98.3 0.01 2.2E-07 64.3 35.2 405 14-532 22-445 (948)
99 KOG1078 Vesicle coat complex C 98.3 0.0053 1.1E-07 66.8 33.2 104 178-289 243-346 (865)
100 KOG1077 Vesicle coat complex A 98.2 0.013 2.8E-07 63.0 34.9 257 106-427 161-439 (938)
101 PF12717 Cnd1: non-SMC mitotic 98.2 7.9E-05 1.7E-09 69.5 15.4 133 144-291 1-139 (178)
102 PF12717 Cnd1: non-SMC mitotic 98.1 0.00028 6.1E-09 65.8 18.5 132 106-249 1-138 (178)
103 KOG2021 Nuclear mRNA export fa 98.1 0.027 5.9E-07 61.1 50.1 282 364-670 453-783 (980)
104 KOG4653 Uncharacterized conser 98.1 0.0004 8.6E-09 75.8 20.5 229 480-736 728-963 (982)
105 KOG2022 Nuclear transport rece 98.1 0.033 7.2E-07 61.7 36.1 348 444-824 477-868 (982)
106 COG5096 Vesicle coat complex, 98.0 0.044 9.4E-07 61.4 43.2 173 184-422 22-196 (757)
107 KOG0168 Putative ubiquitin fus 98.0 0.026 5.6E-07 62.1 31.8 157 430-596 208-366 (1051)
108 KOG1410 Nuclear transport rece 98.0 0.04 8.6E-07 59.0 52.0 146 13-162 3-159 (1082)
109 KOG2956 CLIP-associating prote 98.0 0.0011 2.4E-08 67.5 19.9 177 235-465 301-480 (516)
110 KOG1058 Vesicle coat complex C 98.0 0.043 9.3E-07 59.7 32.3 143 372-531 38-185 (948)
111 KOG2032 Uncharacterized conser 98.0 0.033 7.2E-07 57.7 32.2 116 177-292 255-372 (533)
112 KOG1077 Vesicle coat complex A 98.0 0.045 9.7E-07 59.0 42.4 406 12-525 11-450 (938)
113 cd00020 ARM Armadillo/beta-cat 98.0 3E-05 6.4E-10 67.6 8.0 110 434-548 8-119 (120)
114 PF13513 HEAT_EZ: HEAT-like re 98.0 1.7E-05 3.7E-10 57.3 5.3 55 677-735 1-55 (55)
115 PF05004 IFRD: Interferon-rela 97.9 0.0061 1.3E-07 62.1 25.2 210 270-530 51-283 (309)
116 KOG0392 SNF2 family DNA-depend 97.9 0.081 1.8E-06 61.1 40.5 215 637-864 750-987 (1549)
117 PF05004 IFRD: Interferon-rela 97.9 0.0065 1.4E-07 61.9 25.3 210 478-694 42-259 (309)
118 KOG1967 DNA repair/transcripti 97.9 0.065 1.4E-06 59.9 55.9 151 662-817 866-1018(1030)
119 PF05804 KAP: Kinesin-associat 97.9 0.0022 4.8E-08 71.8 23.4 371 408-826 265-652 (708)
120 PF05918 API5: Apoptosis inhib 97.9 0.021 4.4E-07 61.8 29.4 150 62-232 33-189 (556)
121 PF08506 Cse1: Cse1; InterPro 97.9 0.0052 1.1E-07 64.1 24.4 215 195-457 111-370 (370)
122 PF13646 HEAT_2: HEAT repeats; 97.9 0.00016 3.4E-09 58.7 10.7 85 392-504 2-88 (88)
123 KOG2956 CLIP-associating prote 97.9 0.0017 3.6E-08 66.3 19.6 211 82-309 276-494 (516)
124 PF14500 MMS19_N: Dos2-interac 97.9 0.0051 1.1E-07 60.7 22.5 249 438-712 4-258 (262)
125 KOG4413 26S proteasome regulat 97.8 0.016 3.4E-07 56.4 24.2 302 144-509 53-378 (524)
126 KOG4413 26S proteasome regulat 97.8 0.014 2.9E-07 56.8 23.7 168 113-292 63-244 (524)
127 KOG4653 Uncharacterized conser 97.8 0.0019 4.2E-08 70.7 19.9 219 62-289 738-962 (982)
128 KOG1293 Proteins containing ar 97.8 0.088 1.9E-06 56.7 31.8 141 406-551 391-535 (678)
129 KOG0891 DNA-dependent protein 97.8 0.29 6.2E-06 62.5 44.4 418 367-826 581-1044(2341)
130 PF14500 MMS19_N: Dos2-interac 97.8 0.0055 1.2E-07 60.5 21.0 249 135-440 3-257 (262)
131 KOG2062 26S proteasome regulat 97.8 0.099 2.2E-06 56.9 37.3 124 664-807 556-679 (929)
132 KOG1293 Proteins containing ar 97.7 0.11 2.3E-06 56.1 31.0 135 583-738 395-534 (678)
133 PF13646 HEAT_2: HEAT repeats; 97.7 0.00029 6.3E-09 57.1 9.2 86 435-545 1-88 (88)
134 KOG1967 DNA repair/transcripti 97.7 0.16 3.4E-06 56.9 52.0 142 700-848 863-1008(1030)
135 PLN03076 ARF guanine nucleotid 97.6 0.027 5.9E-07 69.9 28.4 340 125-491 1131-1514(1780)
136 KOG0168 Putative ubiquitin fus 97.6 0.028 6.1E-07 61.9 25.0 385 260-710 209-649 (1051)
137 KOG0891 DNA-dependent protein 97.6 0.51 1.1E-05 60.3 53.7 169 650-824 552-720 (2341)
138 PF04826 Arm_2: Armadillo-like 97.6 0.0042 9E-08 60.9 16.7 217 47-282 11-253 (254)
139 TIGR02270 conserved hypothetic 97.6 0.021 4.6E-07 60.4 23.2 210 181-508 87-296 (410)
140 KOG1820 Microtubule-associated 97.5 0.013 2.9E-07 66.6 22.4 208 385-609 249-459 (815)
141 TIGR02270 conserved hypothetic 97.5 0.023 5E-07 60.1 22.7 242 93-462 54-296 (410)
142 PF08767 CRM1_C: CRM1 C termin 97.5 0.048 1.1E-06 56.0 24.3 143 583-781 90-244 (319)
143 PLN03076 ARF guanine nucleotid 97.5 0.43 9.4E-06 59.8 35.9 304 437-759 1141-1512(1780)
144 KOG4524 Uncharacterized conser 97.5 0.29 6.4E-06 55.3 45.8 389 412-830 568-980 (1014)
145 PF04826 Arm_2: Armadillo-like 97.5 0.0032 7E-08 61.6 14.6 189 391-599 14-210 (254)
146 KOG1525 Sister chromatid cohes 97.5 0.46 1E-05 57.0 42.2 370 87-532 42-436 (1266)
147 KOG0413 Uncharacterized conser 97.5 0.3 6.6E-06 54.8 35.5 180 104-289 483-683 (1529)
148 KOG1820 Microtubule-associated 97.4 0.0082 1.8E-07 68.2 19.1 205 131-394 253-457 (815)
149 KOG0946 ER-Golgi vesicle-tethe 97.4 0.35 7.6E-06 53.3 33.2 178 368-549 40-241 (970)
150 KOG0414 Chromosome condensatio 97.4 0.51 1.1E-05 54.7 48.5 168 633-826 936-1105(1251)
151 PF02985 HEAT: HEAT repeat; I 97.3 0.00022 4.8E-09 43.9 3.0 30 434-463 1-30 (31)
152 PF08167 RIX1: rRNA processing 97.3 0.01 2.2E-07 54.3 15.2 136 428-571 20-163 (165)
153 COG1413 FOG: HEAT repeat [Ener 97.3 0.16 3.5E-06 53.4 26.4 109 367-508 196-304 (335)
154 PF05918 API5: Apoptosis inhib 97.3 0.24 5.3E-06 53.8 27.2 288 12-315 20-320 (556)
155 KOG0413 Uncharacterized conser 97.3 0.47 1E-05 53.4 39.7 149 677-843 945-1094(1529)
156 COG5098 Chromosome condensatio 97.3 0.43 9.2E-06 51.8 51.5 176 664-859 893-1074(1128)
157 COG1413 FOG: HEAT repeat [Ener 97.2 0.26 5.7E-06 51.8 26.9 185 48-289 43-240 (335)
158 KOG2933 Uncharacterized conser 97.2 0.011 2.5E-07 57.2 13.9 148 391-552 90-237 (334)
159 KOG2160 Armadillo/beta-catenin 97.2 0.041 8.8E-07 55.1 18.0 187 633-826 96-285 (342)
160 KOG1525 Sister chromatid cohes 97.2 1 2.2E-05 54.2 51.8 360 62-496 61-441 (1266)
161 PF10274 ParcG: Parkin co-regu 97.1 0.0039 8.6E-08 56.4 10.0 91 477-569 36-130 (183)
162 PF10274 ParcG: Parkin co-regu 97.1 0.0055 1.2E-07 55.5 10.9 89 663-755 38-130 (183)
163 KOG2062 26S proteasome regulat 97.1 0.014 3.1E-07 63.0 15.4 203 5-237 477-681 (929)
164 PF08167 RIX1: rRNA processing 97.1 0.023 5E-07 52.0 15.1 130 664-801 26-163 (165)
165 PF13251 DUF4042: Domain of un 97.1 0.0061 1.3E-07 55.8 11.1 145 407-551 1-176 (182)
166 KOG0889 Histone acetyltransfer 97.0 2.4 5.2E-05 55.4 45.1 293 389-736 984-1305(3550)
167 PF13001 Ecm29: Proteasome sta 96.9 1 2.2E-05 49.9 31.7 82 17-104 25-113 (501)
168 PF11865 DUF3385: Domain of un 96.9 0.014 3.1E-07 52.8 11.4 148 387-550 8-158 (160)
169 KOG2933 Uncharacterized conser 96.9 0.011 2.3E-07 57.4 10.7 135 363-511 100-237 (334)
170 PF08569 Mo25: Mo25-like; Int 96.8 0.73 1.6E-05 47.4 27.1 188 96-295 79-287 (335)
171 KOG1822 Uncharacterized conser 96.8 1.5 3.2E-05 53.7 29.7 133 435-576 878-1013(2067)
172 PF12231 Rif1_N: Rap1-interact 96.8 0.88 1.9E-05 48.2 29.2 317 368-737 10-352 (372)
173 PF12719 Cnd3: Nuclear condens 96.8 0.2 4.4E-06 51.3 20.4 146 666-824 30-185 (298)
174 PF02985 HEAT: HEAT repeat; I 96.7 0.0038 8.2E-08 38.4 4.3 31 664-694 1-31 (31)
175 cd00256 VATPase_H VATPase_H, r 96.7 0.64 1.4E-05 49.2 23.1 69 664-737 354-425 (429)
176 KOG2025 Chromosome condensatio 96.6 0.32 6.8E-06 53.0 20.4 172 48-245 81-254 (892)
177 KOG1517 Guanine nucleotide bin 96.6 0.12 2.5E-06 58.7 17.6 225 237-510 486-734 (1387)
178 PF13251 DUF4042: Domain of un 96.6 0.023 5E-07 52.1 10.4 146 108-253 1-177 (182)
179 cd00256 VATPase_H VATPase_H, r 96.6 1.3 2.9E-05 46.9 26.5 191 47-251 52-259 (429)
180 KOG2160 Armadillo/beta-catenin 96.5 0.23 5E-06 49.9 17.8 141 406-551 97-242 (342)
181 KOG2025 Chromosome condensatio 96.5 0.5 1.1E-05 51.6 20.7 112 87-210 79-194 (892)
182 PF12719 Cnd3: Nuclear condens 96.5 0.44 9.6E-06 48.8 20.4 116 93-209 27-143 (298)
183 KOG1851 Uncharacterized conser 96.4 3.5 7.7E-05 49.7 33.5 129 721-855 1540-1671(1710)
184 KOG2549 Transcription initiati 96.4 0.41 8.9E-06 50.7 19.0 179 221-443 207-393 (576)
185 KOG1517 Guanine nucleotide bin 96.3 0.33 7.1E-06 55.3 18.6 193 46-252 470-673 (1387)
186 KOG1243 Protein kinase [Genera 96.2 0.089 1.9E-06 57.3 13.8 188 221-465 330-518 (690)
187 KOG1243 Protein kinase [Genera 96.2 0.089 1.9E-06 57.3 13.7 256 186-510 260-517 (690)
188 KOG1048 Neural adherens juncti 96.2 0.33 7.1E-06 53.9 18.1 132 701-842 515-665 (717)
189 COG5218 YCG1 Chromosome conden 96.2 2.3 5.1E-05 45.5 46.1 170 106-285 24-193 (885)
190 PF01603 B56: Protein phosphat 96.2 0.86 1.9E-05 48.9 21.2 263 406-702 104-380 (409)
191 PF11864 DUF3384: Domain of un 96.2 2.7 5.9E-05 46.2 35.5 289 108-461 5-329 (464)
192 PF10521 DUF2454: Protein of u 96.1 0.21 4.5E-06 50.6 15.6 168 406-575 89-277 (282)
193 KOG1949 Uncharacterized conser 96.1 0.16 3.5E-06 54.9 14.9 204 81-292 113-332 (1005)
194 PF11865 DUF3385: Domain of un 96.1 0.033 7.2E-07 50.5 8.7 151 657-823 4-157 (160)
195 PF04118 Dopey_N: Dopey, N-ter 96.0 2 4.3E-05 43.6 24.3 165 106-292 2-168 (307)
196 PF04118 Dopey_N: Dopey, N-ter 96.0 0.67 1.5E-05 46.9 18.2 231 584-844 27-280 (307)
197 KOG2759 Vacuolar H+-ATPase V1 96.0 0.86 1.9E-05 46.7 18.6 70 663-738 366-439 (442)
198 PF08064 UME: UME (NUC010) dom 96.0 0.16 3.5E-06 42.3 11.5 79 233-314 27-105 (107)
199 KOG1949 Uncharacterized conser 95.9 0.67 1.5E-05 50.5 18.3 172 22-209 181-371 (1005)
200 KOG2137 Protein kinase [Signal 95.9 0.56 1.2E-05 51.6 18.2 192 560-785 309-500 (700)
201 PF01603 B56: Protein phosphat 95.9 0.7 1.5E-05 49.5 18.8 229 15-258 133-378 (409)
202 KOG1851 Uncharacterized conser 95.8 6.5 0.00014 47.7 34.9 176 368-554 1504-1683(1710)
203 PF08569 Mo25: Mo25-like; Int 95.8 2.4 5.1E-05 43.7 21.4 184 62-251 87-284 (335)
204 KOG0803 Predicted E3 ubiquitin 95.8 1.5 3.2E-05 53.0 22.3 238 178-446 39-289 (1312)
205 KOG0946 ER-Golgi vesicle-tethe 95.7 4.5 9.8E-05 45.2 39.3 117 130-251 121-242 (970)
206 KOG0889 Histone acetyltransfer 95.7 12 0.00026 49.6 40.7 98 478-576 983-1088(3550)
207 PF08064 UME: UME (NUC010) dom 95.6 0.17 3.7E-06 42.2 10.4 78 675-758 27-105 (107)
208 smart00802 UME Domain in UVSB 95.5 0.39 8.5E-06 39.7 11.9 96 215-313 5-104 (107)
209 KOG2137 Protein kinase [Signal 95.5 1.7 3.7E-05 48.1 19.8 249 15-289 239-494 (700)
210 PF12231 Rif1_N: Rap1-interact 95.4 4.4 9.6E-05 43.0 30.6 182 634-824 148-353 (372)
211 PF08623 TIP120: TATA-binding 95.3 0.2 4.4E-06 45.1 10.2 96 427-530 3-116 (169)
212 PF08767 CRM1_C: CRM1 C termin 95.2 2.3 5E-05 43.8 19.3 162 367-532 43-226 (319)
213 KOG1222 Kinesin associated pro 95.2 4.9 0.00011 42.0 27.6 158 513-693 501-664 (791)
214 PF08623 TIP120: TATA-binding 95.1 0.19 4.1E-06 45.3 9.5 118 698-821 3-145 (169)
215 PF10521 DUF2454: Protein of u 95.1 0.39 8.5E-06 48.6 13.0 144 126-275 114-278 (282)
216 cd08050 TAF6 TATA Binding Prot 95.0 0.53 1.2E-05 49.0 14.1 153 225-421 182-340 (343)
217 COG5116 RPN2 26S proteasome re 95.0 0.52 1.1E-05 49.9 13.4 160 45-233 513-674 (926)
218 KOG4500 Rho/Rac GTPase guanine 94.9 5.5 0.00012 41.2 22.0 107 662-776 314-426 (604)
219 PF04510 DUF577: Family of unk 94.8 2.5 5.5E-05 37.8 15.4 147 93-251 3-165 (174)
220 PF10363 DUF2435: Protein of u 94.7 0.31 6.7E-06 39.1 8.8 75 180-255 3-77 (92)
221 PF12530 DUF3730: Protein of u 94.7 4.8 0.0001 39.4 19.3 190 26-234 12-216 (234)
222 smart00802 UME Domain in UVSB 94.6 0.46 9.9E-06 39.3 9.9 77 676-758 28-105 (107)
223 PF10363 DUF2435: Protein of u 94.6 0.35 7.6E-06 38.8 8.9 72 434-511 4-75 (92)
224 PF12054 DUF3535: Domain of un 94.6 8.3 0.00018 41.8 22.3 96 107-209 101-208 (441)
225 KOG0567 HEAT repeat-containing 94.5 4.8 0.0001 38.8 18.7 89 391-507 189-279 (289)
226 PF13001 Ecm29: Proteasome sta 94.5 0.39 8.4E-06 53.1 12.1 180 16-211 238-445 (501)
227 KOG4500 Rho/Rac GTPase guanine 94.3 7.5 0.00016 40.2 27.6 112 388-508 314-431 (604)
228 PF01347 Vitellogenin_N: Lipop 94.3 1.7 3.7E-05 50.3 17.6 144 130-288 430-586 (618)
229 COG5095 TAF6 Transcription ini 94.2 1.5 3.2E-05 42.6 13.4 145 231-424 208-362 (450)
230 KOG1048 Neural adherens juncti 94.2 12 0.00025 42.2 22.0 142 636-781 535-684 (717)
231 COG5116 RPN2 26S proteasome re 93.9 0.56 1.2E-05 49.7 10.9 112 406-536 566-678 (926)
232 KOG2759 Vacuolar H+-ATPase V1 93.8 9.6 0.00021 39.5 26.9 196 48-253 65-274 (442)
233 KOG2149 Uncharacterized conser 93.6 1.6 3.6E-05 44.7 13.4 131 394-531 63-193 (393)
234 PF12830 Nipped-B_C: Sister ch 93.6 1.9 4E-05 40.6 13.1 127 178-310 6-139 (187)
235 PF03224 V-ATPase_H_N: V-ATPas 93.5 1.5 3.2E-05 45.4 13.6 185 664-856 107-308 (312)
236 KOG2081 Nuclear transport regu 93.5 13 0.00029 40.1 30.7 181 635-839 367-553 (559)
237 COG5095 TAF6 Transcription ini 93.4 2.5 5.3E-05 41.2 13.4 150 426-594 194-359 (450)
238 PF05536 Neurochondrin: Neuroc 93.4 16 0.00035 40.8 32.8 183 367-554 73-266 (543)
239 PF14664 RICTOR_N: Rapamycin-i 93.4 12 0.00027 39.4 27.4 237 126-421 20-269 (371)
240 PF12054 DUF3535: Domain of un 93.2 15 0.00032 39.9 23.8 80 363-445 99-180 (441)
241 KOG2149 Uncharacterized conser 93.2 2 4.3E-05 44.2 13.1 111 182-292 60-171 (393)
242 smart00638 LPD_N Lipoprotein N 93.1 7 0.00015 44.7 19.6 159 113-288 376-542 (574)
243 COG5218 YCG1 Chromosome conden 92.6 18 0.00038 39.2 39.1 242 13-286 9-261 (885)
244 KOG3961 Uncharacterized conser 92.4 0.39 8.4E-06 44.0 6.3 95 477-574 112-209 (262)
245 smart00638 LPD_N Lipoprotein N 92.3 9.4 0.0002 43.6 19.2 139 47-207 392-543 (574)
246 cd08050 TAF6 TATA Binding Prot 92.2 1.6 3.5E-05 45.4 11.7 95 406-505 231-337 (343)
247 KOG1822 Uncharacterized conser 92.2 39 0.00085 42.4 52.1 190 51-252 54-250 (2067)
248 COG5657 CSE1 CAS/CSE protein i 92.0 27 0.00059 40.1 33.1 93 768-861 509-609 (947)
249 KOG2549 Transcription initiati 92.0 6.7 0.00014 42.1 15.5 154 367-531 223-394 (576)
250 PF00514 Arm: Armadillo/beta-c 91.9 0.28 6.2E-06 32.4 3.8 28 434-461 13-40 (41)
251 PF03224 V-ATPase_H_N: V-ATPas 91.9 8.1 0.00018 40.0 16.5 203 367-582 73-301 (312)
252 KOG2213 Apoptosis inhibitor 5/ 91.7 6.9 0.00015 40.0 14.5 54 447-509 38-91 (460)
253 PF05536 Neurochondrin: Neuroc 91.6 27 0.00058 39.2 38.0 137 145-292 71-214 (543)
254 KOG1837 Uncharacterized conser 91.2 46 0.00099 41.0 28.1 98 584-701 1523-1620(1621)
255 KOG0567 HEAT repeat-containing 90.9 17 0.00036 35.4 17.7 91 130-248 186-278 (289)
256 PF07571 DUF1546: Protein of u 90.8 1 2.3E-05 36.2 6.7 59 363-422 18-79 (92)
257 PF01347 Vitellogenin_N: Lipop 90.7 34 0.00073 39.6 21.8 119 105-246 447-585 (618)
258 cd03567 VHS_GGA VHS domain fam 90.3 9.9 0.00021 33.4 12.8 77 477-553 36-120 (139)
259 KOG3961 Uncharacterized conser 90.2 0.85 1.8E-05 41.9 6.2 89 663-755 114-205 (262)
260 PF08389 Xpo1: Exportin 1-like 90.2 1.5 3.3E-05 39.4 8.3 124 367-503 4-148 (148)
261 PF00514 Arm: Armadillo/beta-c 89.9 0.68 1.5E-05 30.6 4.2 30 478-507 11-40 (41)
262 cd03568 VHS_STAM VHS domain fa 89.8 2.2 4.8E-05 37.8 8.5 78 128-211 34-112 (144)
263 cd03568 VHS_STAM VHS domain fa 89.6 13 0.00027 33.1 13.1 79 475-553 33-114 (144)
264 cd03561 VHS VHS domain family; 89.2 4.9 0.00011 35.2 10.2 80 127-212 33-115 (133)
265 KOG0803 Predicted E3 ubiquitin 88.9 43 0.00094 41.2 20.5 230 477-715 39-287 (1312)
266 PF12830 Nipped-B_C: Sister ch 88.7 21 0.00046 33.5 14.8 78 130-219 7-84 (187)
267 cd03569 VHS_Hrs_Vps27p VHS dom 88.6 2.5 5.5E-05 37.4 8.0 78 128-211 38-116 (142)
268 KOG1848 Uncharacterized conser 88.3 70 0.0015 39.0 23.5 126 567-693 997-1133(1610)
269 COG5098 Chromosome condensatio 88.2 48 0.001 37.0 48.2 128 34-164 280-419 (1128)
270 PF14222 MOR2-PAG1_N: Cell mor 87.9 51 0.0011 37.0 20.5 376 88-508 125-549 (552)
271 KOG3687 Tuberin - Rap/ran-GTPa 87.7 61 0.0013 37.7 33.6 39 674-712 484-522 (1697)
272 PF04510 DUF577: Family of unk 87.5 18 0.00039 32.6 12.4 37 681-717 60-97 (174)
273 cd03567 VHS_GGA VHS domain fam 87.4 6.3 0.00014 34.6 9.6 77 129-211 36-118 (139)
274 PF08713 DNA_alkylation: DNA a 87.1 13 0.00028 35.9 12.9 158 32-219 35-194 (213)
275 PF11698 V-ATPase_H_C: V-ATPas 87.0 2.9 6.3E-05 35.2 6.9 69 434-508 44-115 (119)
276 cd03561 VHS VHS domain family; 86.6 9.5 0.00021 33.4 10.5 89 432-524 36-130 (133)
277 PF12074 DUF3554: Domain of un 86.5 46 0.00099 34.9 19.5 198 50-256 24-241 (339)
278 KOG1837 Uncharacterized conser 86.3 97 0.0021 38.4 31.4 80 477-556 1539-1618(1621)
279 PF03542 Tuberin: Tuberin; In 86.2 46 0.001 34.7 17.1 174 128-315 138-329 (356)
280 cd03569 VHS_Hrs_Vps27p VHS dom 86.2 23 0.00051 31.3 12.6 79 476-554 38-119 (142)
281 PF08161 NUC173: NUC173 domain 86.1 21 0.00045 33.8 13.0 57 638-696 18-74 (198)
282 PF04388 Hamartin: Hamartin pr 86.1 17 0.00038 41.8 14.8 94 745-843 66-160 (668)
283 PF12783 Sec7_N: Guanine nucle 86.1 12 0.00026 34.5 11.4 107 145-251 36-147 (168)
284 PF09324 DUF1981: Domain of un 85.7 5.3 0.00012 31.7 7.6 57 231-287 28-84 (86)
285 PF04388 Hamartin: Hamartin pr 85.2 43 0.00093 38.7 17.4 128 700-835 66-204 (668)
286 PF11919 DUF3437: Domain of un 84.9 2.3 4.9E-05 33.9 5.1 49 809-857 4-53 (90)
287 PF08161 NUC173: NUC173 domain 84.7 21 0.00046 33.7 12.3 64 491-554 12-75 (198)
288 smart00288 VHS Domain present 84.4 27 0.00059 30.5 12.3 79 475-553 33-115 (133)
289 PF00790 VHS: VHS domain; Int 84.0 30 0.00065 30.6 13.2 80 474-553 37-122 (140)
290 PF11919 DUF3437: Domain of un 83.9 2.6 5.6E-05 33.6 5.0 57 406-463 3-59 (90)
291 PF12765 Cohesin_HEAT: HEAT re 83.6 1.8 4E-05 28.7 3.4 26 179-204 17-42 (42)
292 KOG3036 Protein involved in ce 83.5 22 0.00048 34.0 11.5 71 663-737 124-197 (293)
293 PF00790 VHS: VHS domain; Int 83.5 12 0.00025 33.2 9.6 79 127-211 38-120 (140)
294 PF09324 DUF1981: Domain of un 83.4 5.3 0.00012 31.7 6.7 65 791-855 15-82 (86)
295 PF11864 DUF3384: Domain of un 83.2 79 0.0017 34.9 39.0 287 64-420 3-329 (464)
296 KOG2973 Uncharacterized conser 82.9 54 0.0012 32.8 20.4 105 393-508 7-111 (353)
297 KOG1848 Uncharacterized conser 82.9 1.3E+02 0.0027 37.0 21.4 166 104-292 853-1027(1610)
298 PF11707 Npa1: Ribosome 60S bi 82.7 42 0.00092 34.9 15.0 173 107-292 40-238 (330)
299 PF11701 UNC45-central: Myosin 82.7 3.2 7E-05 37.6 5.9 130 367-505 21-156 (157)
300 PF12530 DUF3730: Protein of u 82.3 53 0.0011 32.2 21.1 167 103-289 11-187 (234)
301 PF14664 RICTOR_N: Rapamycin-i 82.0 74 0.0016 33.7 18.6 214 63-292 37-270 (371)
302 KOG0929 Guanine nucleotide exc 81.6 88 0.0019 39.0 18.3 236 47-292 1035-1299(1514)
303 PF14225 MOR2-PAG1_C: Cell mor 81.2 61 0.0013 32.3 20.1 191 516-741 60-258 (262)
304 PF12765 Cohesin_HEAT: HEAT re 80.9 2.5 5.4E-05 28.1 3.3 25 432-456 17-41 (42)
305 PF12333 Ipi1_N: Rix1 complex 80.5 6.3 0.00014 32.5 6.3 60 655-716 5-65 (102)
306 PF11698 V-ATPase_H_C: V-ATPas 80.5 5.5 0.00012 33.6 5.9 73 49-123 44-116 (119)
307 PF11701 UNC45-central: Myosin 80.4 10 0.00022 34.4 8.3 139 98-246 8-155 (157)
308 PF12783 Sec7_N: Guanine nucle 79.3 42 0.00092 30.8 12.3 100 193-292 35-147 (168)
309 PF07539 DRIM: Down-regulated 79.1 34 0.00073 30.3 10.7 30 179-208 16-45 (141)
310 smart00288 VHS Domain present 78.8 44 0.00096 29.2 12.3 76 432-511 36-114 (133)
311 PF07571 DUF1546: Protein of u 78.8 8.1 0.00018 31.1 6.3 58 406-463 20-79 (92)
312 PF12397 U3snoRNP10: U3 small 77.5 14 0.00029 31.8 7.9 73 429-509 2-75 (121)
313 cd03572 ENTH_epsin_related ENT 77.1 40 0.00087 28.8 10.1 44 474-517 33-76 (122)
314 cd00197 VHS_ENTH_ANTH VHS, ENT 76.9 26 0.00055 29.7 9.4 77 126-208 32-114 (115)
315 KOG0929 Guanine nucleotide exc 76.7 2.1E+02 0.0046 35.9 19.9 160 104-271 1048-1225(1514)
316 smart00185 ARM Armadillo/beta- 76.5 3.6 7.7E-05 26.8 3.2 28 434-461 13-40 (41)
317 KOG1877 Putative transmembrane 75.9 1.1E+02 0.0023 35.6 15.8 105 137-249 62-173 (819)
318 PF14631 FancD2: Fanconi anaem 75.7 2.4E+02 0.0052 36.0 32.7 121 422-551 424-544 (1426)
319 KOG2085 Serine/threonine prote 74.7 47 0.001 34.6 11.6 61 11-81 146-207 (457)
320 PF04078 Rcd1: Cell differenti 74.4 39 0.00084 33.1 10.5 136 639-781 69-218 (262)
321 cd03572 ENTH_epsin_related ENT 73.9 56 0.0012 27.9 10.6 72 178-249 36-118 (122)
322 PF08713 DNA_alkylation: DNA a 73.9 29 0.00063 33.4 10.2 143 94-262 52-196 (213)
323 KOG2011 Sister chromatid cohes 73.3 2.1E+02 0.0046 34.4 18.6 145 130-289 281-433 (1048)
324 PF12333 Ipi1_N: Rix1 complex 72.9 17 0.00038 29.9 7.0 59 213-271 3-62 (102)
325 smart00185 ARM Armadillo/beta- 72.8 7 0.00015 25.4 3.9 28 480-507 13-40 (41)
326 cd07064 AlkD_like_1 A new stru 72.7 92 0.002 29.8 17.3 160 32-219 28-189 (208)
327 PF04078 Rcd1: Cell differenti 71.5 1.1E+02 0.0023 30.2 16.1 101 145-251 110-219 (262)
328 KOG2005 26S proteasome regulat 70.6 1.9E+02 0.0041 32.5 16.8 287 388-737 414-704 (878)
329 PF14868 DUF4487: Domain of un 70.3 1.9E+02 0.0041 32.5 24.0 80 383-464 473-554 (559)
330 cd03565 VHS_Tom1 VHS domain fa 69.5 81 0.0018 27.9 10.9 91 432-525 37-133 (141)
331 KOG2199 Signal transducing ada 67.1 76 0.0016 32.8 11.0 78 385-465 41-121 (462)
332 COG5234 CIN1 Beta-tubulin fold 67.1 2.3E+02 0.0049 32.1 22.7 145 6-164 376-527 (993)
333 PF08146 BP28CT: BP28CT (NUC21 66.7 72 0.0016 28.7 10.1 80 539-619 40-121 (153)
334 KOG1789 Endocytosis protein RM 66.0 2.9E+02 0.0063 33.1 19.8 91 196-292 1741-1842(2235)
335 KOG2122 Beta-catenin-binding p 65.8 3.5E+02 0.0076 33.9 22.4 73 750-827 531-605 (2195)
336 PF12397 U3snoRNP10: U3 small 65.7 37 0.0008 29.1 7.9 73 385-463 2-75 (121)
337 PF12612 TFCD_C: Tubulin foldi 65.6 1.2E+02 0.0027 28.6 12.4 153 431-595 5-159 (193)
338 cd00197 VHS_ENTH_ANTH VHS, ENT 65.6 83 0.0018 26.6 10.0 73 385-460 33-113 (115)
339 PF14911 MMS22L_C: S-phase gen 65.0 1.9E+02 0.0041 30.5 18.2 89 766-858 272-370 (373)
340 KOG1222 Kinesin associated pro 64.8 2E+02 0.0044 30.8 23.5 123 407-534 278-400 (791)
341 PF14668 RICTOR_V: Rapamycin-i 64.7 14 0.0003 28.2 4.3 55 408-464 3-60 (73)
342 cd06561 AlkD_like A new struct 63.9 1.3E+02 0.0029 28.3 13.4 75 436-520 108-182 (197)
343 KOG2199 Signal transducing ada 63.6 78 0.0017 32.7 10.3 77 432-511 44-121 (462)
344 PF14225 MOR2-PAG1_C: Cell mor 63.3 1.7E+02 0.0036 29.3 19.8 145 390-553 112-258 (262)
345 COG5209 RCD1 Uncharacterized p 62.9 19 0.00041 33.8 5.6 92 765-863 159-254 (315)
346 KOG1087 Cytosolic sorting prot 62.9 41 0.00089 36.4 9.0 102 100-212 12-115 (470)
347 cd06561 AlkD_like A new struct 62.6 69 0.0015 30.3 10.0 66 392-465 108-173 (197)
348 PF03542 Tuberin: Tuberin; In 61.1 2.2E+02 0.0047 29.9 16.4 76 448-531 212-287 (356)
349 PF12612 TFCD_C: Tubulin foldi 60.4 1.5E+02 0.0033 27.9 12.7 132 406-549 21-158 (193)
350 PF10350 DUF2428: Putative dea 60.2 1.9E+02 0.004 28.8 13.7 102 214-315 135-250 (255)
351 cd03565 VHS_Tom1 VHS domain fa 58.8 1.3E+02 0.0028 26.6 12.8 78 476-553 35-119 (141)
352 KOG3036 Protein involved in ce 58.6 1.8E+02 0.004 28.2 13.9 101 192-293 137-249 (293)
353 COG5537 IRR1 Cohesin [Cell div 57.7 3.1E+02 0.0067 30.6 16.4 85 230-316 284-368 (740)
354 PF14961 BROMI: Broad-minded p 57.2 1.2E+02 0.0026 36.7 11.9 71 96-166 164-237 (1296)
355 KOG1087 Cytosolic sorting prot 56.7 91 0.002 33.9 10.2 77 477-553 36-116 (470)
356 PF03130 HEAT_PBS: PBS lyase H 56.5 13 0.00029 21.7 2.4 14 449-462 1-14 (27)
357 PF11935 DUF3453: Domain of un 56.2 2.1E+02 0.0045 28.1 14.4 87 179-265 42-160 (239)
358 KOG4199 Uncharacterized conser 55.8 2.4E+02 0.0053 28.8 30.3 133 367-506 300-442 (461)
359 PF10350 DUF2428: Putative dea 55.6 2.2E+02 0.0048 28.3 13.7 160 364-531 60-251 (255)
360 KOG2122 Beta-catenin-binding p 54.0 5.5E+02 0.012 32.4 25.9 71 663-738 530-602 (2195)
361 smart00582 RPR domain present 53.7 69 0.0015 27.4 7.5 99 98-209 5-107 (121)
362 PF14911 MMS22L_C: S-phase gen 53.3 3E+02 0.0064 29.0 22.6 83 428-510 64-152 (373)
363 PF13925 Katanin_con80: con80 52.0 79 0.0017 28.9 7.9 54 113-166 46-104 (164)
364 KOG4524 Uncharacterized conser 51.0 5E+02 0.011 30.9 46.2 80 702-788 801-883 (1014)
365 COG5537 IRR1 Cohesin [Cell div 50.9 2.1E+02 0.0046 31.7 11.6 99 141-250 285-386 (740)
366 KOG2256 Predicted protein invo 49.3 4.4E+02 0.0095 29.8 20.7 54 474-527 277-331 (661)
367 PF12074 DUF3554: Domain of un 49.1 3.4E+02 0.0073 28.4 20.9 158 663-828 61-240 (339)
368 PF11935 DUF3453: Domain of un 47.6 2.9E+02 0.0062 27.2 19.1 127 442-574 2-164 (239)
369 COG5369 Uncharacterized conser 47.6 49 0.0011 35.7 6.4 134 410-549 407-545 (743)
370 PF14961 BROMI: Broad-minded p 47.0 5.4E+02 0.012 31.6 14.9 72 133-213 163-235 (1296)
371 PF01465 GRIP: GRIP domain; I 46.8 35 0.00076 23.2 3.5 36 89-124 3-38 (46)
372 PF04499 SAPS: SIT4 phosphatas 46.5 3.6E+02 0.0078 29.8 13.1 41 697-740 53-95 (475)
373 smart00567 EZ_HEAT E-Z type HE 45.1 29 0.00063 20.7 2.7 15 406-420 1-15 (30)
374 PF12243 CTK3: CTD kinase subu 43.4 2.3E+02 0.005 25.0 11.9 79 437-529 12-93 (139)
375 COG5369 Uncharacterized conser 42.4 64 0.0014 34.9 6.3 136 368-509 406-546 (743)
376 COG5234 CIN1 Beta-tubulin fold 42.2 1.2E+02 0.0025 34.2 8.3 149 92-251 245-417 (993)
377 KOG1789 Endocytosis protein RM 41.7 5.3E+02 0.012 31.1 13.4 137 146-292 1740-1884(2235)
378 KOG1566 Conserved protein Mo25 41.3 4E+02 0.0087 27.1 16.4 184 63-251 91-287 (342)
379 KOG3687 Tuberin - Rap/ran-GTPa 40.9 7E+02 0.015 29.8 24.7 58 407-464 277-336 (1697)
380 PF07539 DRIM: Down-regulated 40.6 2.5E+02 0.0055 24.8 8.9 83 477-572 15-97 (141)
381 PF10193 Telomere_reg-2: Telom 39.9 1.3E+02 0.0029 25.4 6.8 86 752-838 6-94 (114)
382 KOG1877 Putative transmembrane 39.8 1.6E+02 0.0034 34.3 9.2 94 707-805 59-152 (819)
383 KOG3678 SARM protein (with ste 39.3 5.1E+02 0.011 27.7 14.5 140 18-160 183-336 (832)
384 smart00755 Grip golgin-97, Ran 38.5 41 0.00089 22.9 2.8 34 90-124 3-36 (46)
385 PF10193 Telomere_reg-2: Telom 38.5 2.4E+02 0.0053 23.8 9.1 81 182-262 5-91 (114)
386 PF08146 BP28CT: BP28CT (NUC21 38.3 3E+02 0.0065 24.8 10.5 80 681-761 39-120 (153)
387 COG5209 RCD1 Uncharacterized p 38.2 97 0.0021 29.4 6.0 95 637-736 117-217 (315)
388 KOG2973 Uncharacterized conser 37.3 4.6E+02 0.01 26.6 20.4 101 97-209 7-111 (353)
389 KOG1104 Nuclear cap-binding co 36.7 2.3E+02 0.005 32.3 9.6 110 746-861 64-182 (759)
390 KOG2038 CAATT-binding transcri 35.7 7.6E+02 0.016 28.7 28.0 75 217-295 300-375 (988)
391 PF11841 DUF3361: Domain of un 35.5 3.4E+02 0.0074 24.6 12.8 76 178-254 56-135 (160)
392 KOG1823 DRIM (Down-regulated i 34.9 1E+03 0.022 30.0 34.7 371 429-823 560-961 (1364)
393 COG4912 Predicted DNA alkylati 34.6 1.9E+02 0.0041 27.6 7.4 81 376-464 104-185 (222)
394 PF06685 DUF1186: Protein of u 34.0 4.7E+02 0.01 25.8 12.9 165 605-796 30-195 (249)
395 PF05327 RRN3: RNA polymerase 33.5 7.7E+02 0.017 28.1 18.5 58 474-531 341-404 (563)
396 cd03562 CID CID (CTD-Interacti 32.6 3E+02 0.0065 23.1 9.2 46 475-520 33-78 (114)
397 PF12422 Condensin2nSMC: Conde 32.2 3.8E+02 0.0082 24.1 9.0 94 65-158 43-146 (152)
398 PF08620 RPAP1_C: RPAP1-like, 31.9 76 0.0016 24.2 3.6 32 132-163 40-71 (73)
399 KOG3723 PH domain protein Melt 31.4 7.6E+02 0.016 27.4 18.9 20 676-695 103-122 (851)
400 KOG3678 SARM protein (with ste 31.3 6.9E+02 0.015 26.9 16.1 161 33-209 166-336 (832)
401 PF09759 Atx10homo_assoc: Spin 30.6 1.5E+02 0.0032 24.5 5.3 56 409-465 3-62 (102)
402 PF06371 Drf_GBD: Diaphanous G 30.0 1.8E+02 0.0038 27.1 6.9 91 367-461 92-186 (187)
403 PHA01351 putative minor struct 29.7 7.3E+02 0.016 28.2 11.7 27 735-761 127-153 (1070)
404 cd07064 AlkD_like_1 A new stru 28.6 5.3E+02 0.011 24.7 15.8 165 63-261 24-190 (208)
405 PF11640 TAN: Telomere-length 27.6 4.6E+02 0.0099 23.6 10.4 90 97-193 8-120 (155)
406 COG1698 Uncharacterized protei 27.6 3.1E+02 0.0068 21.7 7.7 38 7-45 8-48 (93)
407 PF11841 DUF3361: Domain of un 27.1 4.8E+02 0.01 23.7 12.7 96 111-213 32-135 (160)
408 KOG2005 26S proteasome regulat 26.9 9.9E+02 0.021 27.3 17.9 69 127-207 409-479 (878)
409 COG5221 DOP1 Dopey and related 26.6 1.2E+03 0.027 28.3 13.5 92 639-739 82-177 (1618)
410 KOG2011 Sister chromatid cohes 26.3 1.3E+03 0.027 28.3 22.0 87 217-305 278-369 (1048)
411 cd00870 PI3Ka_III Phosphoinosi 26.3 5.1E+02 0.011 23.7 10.7 117 8-144 5-125 (166)
412 PF12463 DUF3689: Protein of u 25.4 3.7E+02 0.008 27.5 8.3 59 641-699 118-180 (303)
413 PF14668 RICTOR_V: Rapamycin-i 25.4 1.7E+02 0.0038 22.3 4.6 52 368-422 4-59 (73)
414 KOG1810 Cell cycle-associated 25.0 1.4E+03 0.031 28.5 15.6 100 365-464 843-968 (1417)
415 smart00582 RPR domain present 24.7 4.3E+02 0.0093 22.4 10.1 62 438-513 5-66 (121)
416 PF06371 Drf_GBD: Diaphanous G 24.3 2.8E+02 0.006 25.8 7.1 55 144-208 129-186 (187)
417 PF13981 SopA: SopA-like centr 24.1 4.9E+02 0.011 22.8 8.4 56 237-292 69-124 (135)
418 cd00872 PI3Ka_I Phosphoinositi 24.0 1.4E+02 0.003 27.4 4.7 77 432-525 38-114 (171)
419 PF08324 PUL: PUL domain; Int 23.9 7.1E+02 0.015 24.8 10.5 99 406-507 124-230 (268)
420 PF14228 MOR2-PAG1_mid: Cell m 23.5 1.5E+03 0.033 28.3 34.3 87 369-464 488-574 (1120)
421 PF12726 SEN1_N: SEN1 N termin 22.9 1.3E+03 0.028 27.3 33.0 530 10-616 36-607 (727)
422 COG4912 Predicted DNA alkylati 22.9 6.9E+02 0.015 24.0 9.4 74 126-212 113-186 (222)
423 KOG2085 Serine/threonine prote 22.5 9.6E+02 0.021 25.6 15.0 37 428-464 171-208 (457)
424 PF14868 DUF4487: Domain of un 22.5 1.2E+03 0.025 26.5 25.4 115 433-552 434-555 (559)
425 PHA02855 anti-apoptotic membra 22.2 5.8E+02 0.013 23.0 8.1 39 474-512 71-110 (180)
426 PF01417 ENTH: ENTH domain; I 21.5 5.2E+02 0.011 22.1 8.0 61 371-431 20-81 (125)
427 COG5110 RPN1 26S proteasome re 21.3 1.1E+03 0.025 26.0 32.2 76 48-126 47-128 (881)
428 PLN03205 ATR interacting prote 21.3 6.1E+02 0.013 26.6 8.8 113 92-209 322-446 (652)
429 COG5231 VMA13 Vacuolar H+-ATPa 21.1 9E+02 0.02 24.8 21.9 69 663-737 356-428 (432)
430 PF00613 PI3Ka: Phosphoinositi 20.8 6.9E+02 0.015 23.3 9.3 114 9-143 5-123 (184)
431 PF05997 Nop52: Nucleolar prot 20.8 7.7E+02 0.017 23.8 9.9 93 483-575 4-98 (217)
432 KOG4199 Uncharacterized conser 20.1 9.8E+02 0.021 24.8 27.1 135 392-535 286-430 (461)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-112 Score=855.54 Aligned_cols=839 Identities=55% Similarity=0.949 Sum_probs=786.8
Q ss_pred CCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhh
Q 002921 3 TSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (865)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~ 82 (865)
+.|.|+|+++.++++.++|++..|||++ +|+.+...+.++...|+|..+|..||...++.+..+|..|+.+|||.++.+
T Consensus 1 ~~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~ 79 (885)
T KOG2023|consen 1 MAMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH 79 (885)
T ss_pred CCCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccc
Confidence 3589999999999999999999999999 999999999999999999999999998778889999999999999999999
Q ss_pred hCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhc
Q 002921 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (865)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~ 162 (865)
|..++++...++|..+++.+.++++.+|...+.+|.+|+...+-..||+++|.|.+++.+++.+..++|+.+|..++++.
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 002921 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (865)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~ 242 (865)
...+..++. ++.++.++|.++++++++++.+|..|+.|++.++-..+..+..+++.+++.++.+..|+++++|+.+|
T Consensus 160 a~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC 236 (885)
T KOG2023|consen 160 AQFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVC 236 (885)
T ss_pred HHHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 988876543 57889999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhh
Q 002921 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (865)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~ 322 (865)
.+|..+.+..++.+.||++.+++++++..++.+++|..+|+|||.++++.+.++..+.||+++++|+++..|.+.++|+-
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999988
Q ss_pred hhh-hcccCCCCCccCCCCcccccccCCCCCC-------CCC--CCccccccccHHHHHHHHHHHHHhhhCcchhhhhHH
Q 002921 323 LVE-AEEDESLPDRDQDLKPRFHSSRLHGSEN-------PED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMP 392 (865)
Q Consensus 323 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~--~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ 392 (865)
+.. +++|+..+++++.|||.|++++.++..+ +|| ||||...+|++|++++.+++.++..+|+++++.++|
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 777 5567889999999999999887665522 111 344556789999999999999999999999999999
Q ss_pred HHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002921 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (865)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (865)
.+.+.+.+++ |.+|++++.++|.+++||.+.+.+|++.++|++++++.|..|.||..+||+|++++.|.... .
T Consensus 397 lLk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~ 469 (885)
T KOG2023|consen 397 LLKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----S 469 (885)
T ss_pred HHHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----C
Confidence 9999999988 99999999999999999999999999999999999999999999999999999999998643 4
Q ss_pred chhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 473 ~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
..+++..++..+++.+-|.+..|+++||+|+..+-+..++.+.||+..|+..+..+++.+..+++...++++++++.++|
T Consensus 470 ~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 470 RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhcccccCC
Q 002921 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA--KVDSVAAGA 630 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~~~~~ 630 (865)
....+|.|++.+||++++.|+..+++|+++..+++|++.++.++|.+|.||.++++++++.++++..+. +...+...+
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~ 629 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVE 629 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865332 333444455
Q ss_pred CCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHH
Q 002921 631 QYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAA 710 (865)
Q Consensus 631 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 710 (865)
.||.+++.+++++++.+++++|++..+++.+..+..+++.|++|.-++||++|+.++|++++.|.+.+.|++..+++.+.
T Consensus 630 ~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 630 APDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred CCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 67889999999999999999999999999876799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccccc
Q 002921 711 KQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH 790 (865)
Q Consensus 711 ~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 790 (865)
..+..+ +..+..||+|++|.++...+...++|+..++..+.-+++.+. ....+.+|...++|||...+|+.+.|+
T Consensus 710 ~Nl~~~----~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~~~tllENtAITIGrLg~~~Pe~vAp~ 784 (885)
T KOG2023|consen 710 ANLNPE----NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-TPKTLLENTAITIGRLGYICPEEVAPH 784 (885)
T ss_pred hcCChh----hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-chHHHHHhhhhhhhhhhccCHHhcchh
Confidence 888887 778999999999999999999999999999999999998774 477899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc-HHHHHHHHH
Q 002921 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT-LHLILLSVI 857 (865)
Q Consensus 791 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 857 (865)
++.+++.||..+....|.++|..||+|+|+++..||.++...+..|+.++++|.|++. +.++|..++
T Consensus 785 l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL 852 (885)
T KOG2023|consen 785 LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKIL 852 (885)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999775 888887765
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-75 Score=630.89 Aligned_cols=791 Identities=24% Similarity=0.337 Sum_probs=660.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHH
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i 94 (865)
+++.+++.++.+|||+ +|++||+.|+.....+.....|.+++.. +.++++|++||+++|+.+.++|+.++.+.++.|
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 5788999999999999 9999999999877665688889999875 899999999999999999999999999999999
Q ss_pred HHHHhhhh-hCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 95 KSELLPCL-GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 95 ~~~ll~~l-~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
|+.++.++ .++.+.||++.|.+++.|++.+.++.||+++++|.++.+|+++..|+.|+.+|..+.+.++..+.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~------ 154 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ------ 154 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc------
Confidence 99999976 57899999999999999999987779999999999999999999999999999999999887653
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--HHhHHhHHHHHHHH----HHhhCCCCHHHHHHHHHHHHH
Q 002921 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGL----FLLSNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~l~~l----~~~~~~~~~~~r~~~~~~l~~ 247 (865)
++++.+.+.+.+.++|++..||..|+++++.++..++ ....+++..++|.+ -..+.+.+.+....++++|..
T Consensus 155 --~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 155 --PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred --hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 4679999999999999877799999999999998875 44444444445544 444556677778899999999
Q ss_pred HHhhchhhhhhhHHHHHHHHhhhcCC--CCHHHHHHHHHHHHHhhcc-CCchhhHHhhhhhHHHHHHhhccCChhhhhhh
Q 002921 248 LIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~ 324 (865)
+++..|+.+++++.+++++++....+ -++.+|..|++++..+++. +.+.+...++..++++.++..|+..++|. .|
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~-ew 311 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD-EW 311 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch-hh
Confidence 99999999999999999999998765 4788999999999999887 33445556788999999999999877763 33
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC-cchhhhhHHHHHHhhccCCC
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-DEILPTLMPVIQAKLSASGD 403 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~ 403 (865)
.+. |+.|||+++ +....|..++++++...| +.+++.+++.+..++++++
T Consensus 312 ~~~------------------------d~~ded~~~-----~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~- 361 (1075)
T KOG2171|consen 312 SNE------------------------DDLDEDDEE-----TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE- 361 (1075)
T ss_pred ccc------------------------ccccccccc-----CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-
Confidence 221 112212211 357789999999999996 5889999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002921 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (865)
|+.|+|++++|+.+++||++.+.+.+++|++.+++.++||+|+||.+||.++|+++..+.+. ....+.+.+.+.
T Consensus 362 --w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 362 --WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPPA 435 (1075)
T ss_pred --HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999764 344555666678
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHH-HHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhh
Q 002921 484 LLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQ-HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVY 560 (865)
Q Consensus 484 l~~~l~d~-~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~-~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (865)
++..+.++ +++|+..|+.++-++.+.+ ++.+.||++.+++ .+..++++....+++.+..+|++++.+.+..|. +|
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~--pY 513 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI--PY 513 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH--hH
Confidence 88888876 7899999999999999987 7889999999999 455555666667888999999999999999998 99
Q ss_pred HhhhhHHHHHHHhcCCCCC-cch-hhHHHHHHHHHHHhcc-ccccchHHHHHHHHHH-----------------------
Q 002921 561 LDILMPPLIAKWQQLPNSD-KDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINI----------------------- 614 (865)
Q Consensus 561 ~~~l~~~l~~~l~~~~~~~-~~~-~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~----------------------- 614 (865)
++.+||.+.+.+.+.++++ +.+ ...++|++.++.++|+ .|.|+..++++.+...
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 9999999999999887444 333 6778888888887774 6777666666655433
Q ss_pred ---------------------HHHHHHHh-hcc------------------ccc--------------------------
Q 002921 615 ---------------------IQTQQLAK-VDS------------------VAA-------------------------- 628 (865)
Q Consensus 615 ---------------------l~~~~~~~-~~~------------------~~~-------------------------- 628 (865)
.+...... .|+ +.+
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l 673 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL 673 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh
Confidence 11000000 000 000
Q ss_pred --------------------------------------------------------------------------------
Q 002921 629 -------------------------------------------------------------------------------- 628 (865)
Q Consensus 629 -------------------------------------------------------------------------------- 628 (865)
T Consensus 674 k~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~v 753 (1075)
T KOG2171|consen 674 KEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEI 753 (1075)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence
Q ss_pred ----------------------------------------------C-C-----------CCCcchhHhhhhhhhHHHHH
Q 002921 629 ----------------------------------------------G-A-----------QYDKEFVVCCLDLLSGLAEG 650 (865)
Q Consensus 629 ----------------------------------------------~-~-----------~~~~~~~~~al~~l~~l~~~ 650 (865)
. + |.|..+...+.+.+..+++.
T Consensus 754 l~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~ 833 (1075)
T KOG2171|consen 754 LESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKA 833 (1075)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 0 0 01112344566777788888
Q ss_pred hhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 002921 651 LGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACW 730 (865)
Q Consensus 651 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~ 730 (865)
.++.|.+++.+ +.|.+...+....+.-|+.|+.++++++..+++...+|...++|.+...+.++ +++||++|++
T Consensus 834 ~k~~f~p~f~~--~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~----~pEVRqaAsY 907 (1075)
T KOG2171|consen 834 LKGSFLPFFEN--FLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS----DPEVRQAAAY 907 (1075)
T ss_pred ccccccHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC----CHHHHHHHHH
Confidence 88889999987 99999998887666669999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHhcCch---hhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCC
Q 002921 731 AIGELAVKARQEISPIVMTVVLCLVPILKHSE---ELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (865)
Q Consensus 731 ~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 807 (865)
.+|.+++..+....|.....++.+..++..+. +.+....+|++++++++...+|..+. ++++++.|++.||...|
T Consensus 908 GiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 908 GMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCccc
Confidence 99999999998877878888888888776653 22456779999999999999888777 99999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhCchhhHh----hHHHHHHHhhccCCCcc---------HHHHHHHHHhcCccc
Q 002921 808 DTEKEDAFRGLCAMVKANPSGALS----SLVFMCRAIASWHVRIT---------LHLILLSVIFFGSFW 863 (865)
Q Consensus 808 ~~~~~~~~~~l~~l~~~~~~~~~~----~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 863 (865)
.++.+..+..|+.+++.|++.+.. ++|.|+.++++-.+... ++++.+++++-+|-|
T Consensus 986 ~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~ 1054 (1075)
T KOG2171|consen 986 KEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQF 1054 (1075)
T ss_pred hhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999887775 89999999887766552 688888888766655
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-62 Score=503.31 Aligned_cols=741 Identities=24% Similarity=0.371 Sum_probs=602.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHH-----------Hhh
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i-----------~~~ 82 (865)
++.++|+.+.|||.. +|++||++|.++.. .|+|...|.++|++ ....+..|..|++.|||.+ ..+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 467888999999999 99999999999864 68999999999985 4778999999999999988 347
Q ss_pred hCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc-CcCChHHHHHHHHHhhccCChh-HHhHHHHHHHHHHh
Q 002921 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDIN-HMEGAMDALSKICE 160 (865)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~-~r~~al~~L~~l~~ 160 (865)
|-.++.+.|+++|..++..|.++.+..++.++++++.||..+ |.+.||++++.+.....++.+. ++++++.+++.+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999997 7899999999999999887664 89999999999999
Q ss_pred hchhhcccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHH
Q 002921 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAE 236 (865)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~ 236 (865)
+..+... +...+.++..+.++.+. ++..||.+|+++|....++....+.... .-+|+.++...+.++.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 9876521 23457888888888876 5779999999999998876432222211 23578888888999999
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhHHH-HHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCc-----------------hhh
Q 002921 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~-----------------~~~ 298 (865)
++.+++.||..+...+++++.+|+.+ ++...+..+.+.+++|..+++|||+++|+.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 889999999999999999999999999886321 122
Q ss_pred HHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002921 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (865)
Q Consensus 299 ~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l 378 (865)
.+..++.++|.++..|...++ ++|+ ++|++.++|..||.-+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqde-----------------------------------~~d~----DdWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQDE-----------------------------------DDDD----DDWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCCC-----------------------------------Cccc----ccCcHHHHHHHHHHHH
Confidence 233455778888877765322 1111 2499999999999999
Q ss_pred HhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHHHHH
Q 002921 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (865)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (865)
++..|+.++++++|++.+.+++++ |+.|++|.+++|++.++.. +.+.+..++.+|.++..+.|++-.||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 9999999999999998765 456788999999999999999999999999999
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc---------cchhhhHHHHHHHHHHH
Q 002921 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---------EELAPRLEIILQHLMMA 528 (865)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~---------~~~~~~~~~i~~~l~~~ 528 (865)
|+++++++... ....+...++..+++.++| +|+|...+|+++.++++.+. ....|+++.|+..|++.
T Consensus 431 grI~d~l~e~~---~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEAI---INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhhc---ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999998653 4567888999999999999 59999999999999998752 23568999999999988
Q ss_pred hcccc---hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC------CCCCcc----h-hhHHHHHHHHHH
Q 002921 529 FGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL------PNSDKD----L-FPLLECFTSIAQ 594 (865)
Q Consensus 529 l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~----~-~~~~~~l~~l~~ 594 (865)
-+..+ ...+..++++++.+++...+... +.+..+...+.+.+.+. +.+++. + ..++.+++.+.+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy--~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~r 584 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVY--PMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIR 584 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 76643 34456899999999998887665 55555555555544432 112222 2 356789999999
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcC
Q 002921 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD 674 (865)
Q Consensus 595 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 674 (865)
.+|+.+.++.++++..++++++... ..-+-+.++-+++++++.+|+.|..|++. +.|+|...+++
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s~~-------------s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n 649 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFESKR-------------SAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSN 649 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcCCc-------------cccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhc
Confidence 9999999999999999999988621 22334468899999999999999999987 99999999954
Q ss_pred -CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHH
Q 002921 675 -DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLC 753 (865)
Q Consensus 675 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~ 753 (865)
.+..|...|+++.|++++..+..+.||...++..+..+|+++..+| ++|-....++|+|+...+.+|.+|+..++..
T Consensus 650 ~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR--~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~l 727 (859)
T KOG1241|consen 650 FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR--NVKPAILSVFGDIALAIGADFEPYLEMVMPL 727 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999998865 8999999999999999999999999998887
Q ss_pred HHHHhc---Cc-----hhhhhhHHHHHHHHHHhhhh---h--CCCcccccHHHHHHHHHHHhccCCC-hHHHHHHHHHHH
Q 002921 754 LVPILK---HS-----EELNKSLIENSAITLGRLAW---V--CPELVSPHMEHFMQPWCIALSMIRD-DTEKEDAFRGLC 819 (865)
Q Consensus 754 l~~~l~---~~-----~~~~~~~~~~~~~~l~~l~~---~--~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~l~ 819 (865)
+...-. ++ .+....+|++++.+..-++. . .+..+.||++.+++-+-..-.+... ...-..++-.+.
T Consensus 728 lq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIg 807 (859)
T KOG1241|consen 728 LQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIG 807 (859)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 776541 11 11245577777766543332 1 2345668888877655443332221 223445666677
Q ss_pred HHHhhCchhhH
Q 002921 820 AMVKANPSGAL 830 (865)
Q Consensus 820 ~l~~~~~~~~~ 830 (865)
.+....|.++.
T Consensus 808 DL~~~fg~~~~ 818 (859)
T KOG1241|consen 808 DLATMFGKGVI 818 (859)
T ss_pred HHHHHcccchh
Confidence 77777775544
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-50 Score=400.65 Aligned_cols=738 Identities=16% Similarity=0.220 Sum_probs=569.8
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHhc--CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHH-----------Hh
Q 002921 16 EICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RT 81 (865)
Q Consensus 16 ~~~~~l~~-~~s~~~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i-----------~~ 81 (865)
++.++.++ .+|||+. +|..||++|.++.+ ..+|...+.+.+++ ....++.|..|++.|||.+ ..
T Consensus 5 ef~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 5 EFRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 34455554 4799999 99999999999986 35677888898885 4778999999999999988 34
Q ss_pred hhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc-CcCChHHHHHHHHHhhccCCh-hHHhHHHHHHHHHH
Q 002921 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKIC 159 (865)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~-~~r~~al~~L~~l~ 159 (865)
+|..+++|.|+++|...+++|.++.+..-..++++++.||+.+ +.+.||+++..+.....++.| ..+..++.+++..+
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999997 788999999999999988765 67788999999999
Q ss_pred hhchh-hcccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhccccHHhH-H-hHHHHHHHHHHhhCCCC
Q 002921 160 EDIPQ-VLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALF-V-SMDQYLQGLFLLSNDPS 234 (865)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~~ 234 (865)
+...+ .+.. ..+.++-.+..+... ++..+|.+|+++|..-..+....+. + .-.-+++..+...+.++
T Consensus 163 es~~Pe~li~--------~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 163 ESEAPEDLIQ--------MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred hccCHHHHHH--------HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 87665 2221 124444455554443 4779999999999885443222221 1 12235777888888889
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhHHH-HHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHh------------
Q 002921 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE------------ 301 (865)
Q Consensus 235 ~~~r~~~~~~l~~l~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~------------ 301 (865)
.++...++.||..+...+++++.+|++. +.....+.+++.++++...+++||+++++.+...+.-..
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999999999999999999999999984 556667889999999999999999999987433222222
Q ss_pred ---hhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002921 302 ---FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (865)
Q Consensus 302 ---~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l 378 (865)
....++|.++..++...+|. ++ ++|++..+|..||.-.
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed~-----------------------------------~~----DdWn~smaA~sCLqlf 355 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGEDY-----------------------------------YG----DDWNPSMAASSCLQLF 355 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-----------------------------------cc----cccchhhhHHHHHHHH
Confidence 23456777777666532221 11 3599999999999999
Q ss_pred HhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh-hhhccHHHHHHHHHhccCCCChHHHHHHHHHH
Q 002921 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (865)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (865)
++..|+.++..++.++.+.+++++ |..|++|.+++|++..+..+ .+.++.++.+|.+...+.|+.-.|+.++.||+
T Consensus 356 aq~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~ 432 (858)
T COG5215 356 AQLKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCF 432 (858)
T ss_pred HHHhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHH
Confidence 999999999999999999999999 99999999999999987764 45688999999999999999999999999999
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHHHHHhc
Q 002921 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-------EELAPRLEIILQHLMMAFG 530 (865)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-------~~~~~~~~~i~~~l~~~l~ 530 (865)
|+++.++...++| ..++...+...+..+.| ++.+...+++...++++... ..+.++++.|+..|++.-+
T Consensus 433 g~iad~va~~i~p---~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 433 GAIADHVAMIISP---CGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred HHHHHHHHHhcCc---cccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 9999999876432 44566777777777777 57888899999999998752 3467888889888887654
Q ss_pred cc--chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC----C----CCCc----ch-hhHHHHHHHHHHH
Q 002921 531 KY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL----P----NSDK----DL-FPLLECFTSIAQA 595 (865)
Q Consensus 531 ~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~----~~~~----~~-~~~~~~l~~l~~~ 595 (865)
.. +...+..+++++++++..+.+... +.+..+.....+.+.+. + .+|. ++ .+.+..+..+.+.
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~--~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVS--DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 234456889999999988776654 44444444444444321 1 1121 12 4567788888888
Q ss_pred hccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCC
Q 002921 596 LGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD 675 (865)
Q Consensus 596 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 675 (865)
.+..+.+-.++++..++++|++... .-.....+.+++.+..++++.|..|++. +.|++.+.++..
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~~-------------t~~~~dV~~aIsal~~sl~e~Fe~y~~~--fiPyl~~aln~~ 651 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTKP-------------TTAFGDVYTAISALSTSLEERFEQYASK--FIPYLTRALNCT 651 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccCC-------------chhhhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhcch
Confidence 8889999999999999999886421 1122236778999999999999999987 999999999889
Q ss_pred ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 002921 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLV 755 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~ 755 (865)
+..+...|++++|+++...+.+|.+|...++..+..+++++..++ +++.....++|+++...+.+|.+|++.++-.+.
T Consensus 652 d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R--~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHR--DLKPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcc--ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987755 889999999999999999999999999887666
Q ss_pred HHhcC-ch-------hhhhhHHHHH---HHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHh
Q 002921 756 PILKH-SE-------ELNKSLIENS---AITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD-DTEKEDAFRGLCAMVK 823 (865)
Q Consensus 756 ~~l~~-~~-------~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~l~~l~~ 823 (865)
..-.- +. +....+++.. ...++.-+..-+..+.||+..++..+-....+... ....+.++-.+..+..
T Consensus 730 qas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~ 809 (858)
T COG5215 730 QASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAG 809 (858)
T ss_pred HHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHH
Confidence 54321 11 1122233322 22233444444667788887777665444333332 2233566777777888
Q ss_pred hCchh
Q 002921 824 ANPSG 828 (865)
Q Consensus 824 ~~~~~ 828 (865)
..|.+
T Consensus 810 mfpkg 814 (858)
T COG5215 810 MFPKG 814 (858)
T ss_pred hCCCc
Confidence 87754
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-46 Score=399.61 Aligned_cols=774 Identities=19% Similarity=0.269 Sum_probs=568.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc--------
Q 002921 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (865)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~-------- 85 (865)
.+.+.+++.++.+||++ .|++||++|+++++.|+|+..+++|+.++ +.+..+|+.|++.|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 35789999999999998 99999999999999999999999999864 788899999999999999999985
Q ss_pred -CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 86 -~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
+.+++|+.+|++++..+...+.-+|.+...++..|.+.++|+.||.+++.+...+++++.....+|+.+|..+++.+..
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5789999999999999998899999999999999999999999999999999999999999999999999999998764
Q ss_pred hcccCCCCCCCcchhhhHHHH----HHHhcCCC---HHHHHHHHHHHHHHhcc-ccHHhH--HhHHHHHHHHHHhhCCC-
Q 002921 165 VLDSDVPGLAECPINIFLPRL----LQFFQSPH---TSLRKLSLGSVNQFIML-MPSALF--VSMDQYLQGLFLLSNDP- 233 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l----~~~l~~~~---~~vr~~a~~~l~~~~~~-~~~~~~--~~~~~~l~~l~~~~~~~- 233 (865)
....+ +.-+...+..++|.+ .+++.+++ .++....++++.+++.+ +|..+. ..+..+++.+...++.+
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 32221 111122344444444 44555554 46778889999888865 566554 23455555555544321
Q ss_pred ----------------CHHHHHHHHHHHHHHHhhchhh--------------hhhhHHHHHHHHhhhcC---C---CCHH
Q 002921 234 ----------------SAEVRKLVCAAFNLLIEVRPSF--------------LEPHLRNLFEYMLQVNK---D---TDDD 277 (865)
Q Consensus 234 ----------------~~~~r~~~~~~l~~l~~~~~~~--------------~~~~l~~l~~~l~~~~~---~---~~~~ 277 (865)
-.++++.|+..|..+.+.+++. +..+.+.+.+..++.+. . -.++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 1357788999998888765421 12233344444443321 1 3577
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhHHHHH-HhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (865)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (865)
+-..++.++..++.....++.++||+..++.-. ++.|+.+++|.+.|++||.| |+|-.|.. .+
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E-------YiR~~~Di--------~e- 383 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE-------YIRKKFDI--------FE- 383 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH-------HHHhcCch--------hc-
Confidence 888999999999888778999999999988755 59999999999999998875 56644421 11
Q ss_pred CCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc-----CCCcchhHHHHHHHHHHHHHhchhh--hhhc
Q 002921 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIK--GLYP 429 (865)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~ 429 (865)
+..+++.+|..++..++...|++.++.+++++.+.+++ +...+.+.+++|+.++|++++-..+ .++.
T Consensus 384 ------d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 384 ------DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred ------ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 13467899999999999999999999999999988872 2234599999999999999976543 2334
Q ss_pred cHHH-HHHHHHhccCCCChHHHHHHHHHHHhhHH-HHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q 002921 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (865)
Q Consensus 430 ~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l 506 (865)
.++. +++.+++.++++...+|.+|||.+++++. .++ ....+.+.+.....+|. |++-.||..|+.||..|
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 4444 67789999999999999999999999994 333 56778899999999998 78899999999999999
Q ss_pred HHHhc---cchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH----HhcCCC--
Q 002921 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK----WQQLPN-- 577 (865)
Q Consensus 507 ~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~----l~~~~~-- 577 (865)
+.+.. +.+.++++++++.++++.+..+.+.+. .++..++...++++. ||...++..|.+. ++..++
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseEls--PfA~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELS--PFAVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99874 559999999999999999988777665 445566677777776 7776666655444 443111
Q ss_pred ---CCcch--hhHHHHHHHHHHHhcc--ccccchHH-HHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHH
Q 002921 578 ---SDKDL--FPLLECFTSIAQALGA--GFTQFAQP-VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (865)
Q Consensus 578 ---~~~~~--~~~~~~l~~l~~~~~~--~~~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~ 649 (865)
+++.+ ..++.++.++..++.. .+..++.+ +++.+-.+|.+.. .++.+.+++.+..+.-
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF 671 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh
Confidence 12222 3455666666666654 22223322 3333333344321 2455555555555444
Q ss_pred HhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH---hhHHHHHHHHHHhcCCCCCCCchhHHH
Q 002921 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSVAN 726 (865)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~~~ 726 (865)
..+ ...|-+-+ +++++..++++...+--....-++.+++...+..+. .|...++..+.+.+.+++. ...-..
T Consensus 672 ~~~-~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~--~D~d~~ 746 (1010)
T KOG1991|consen 672 LSK-EISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENG--EDSDCE 746 (1010)
T ss_pred hhc-ccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCC--chHHHH
Confidence 332 23444444 889999998887766667777777777777665554 3567777788888877532 223456
Q ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccccc------HHHHHHHHHH
Q 002921 727 NACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH------MEHFMQPWCI 800 (865)
Q Consensus 727 ~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~l~~~~~ 800 (865)
.|+..+..++.++++.+..|++..++..+..+....+ ....+--++.++.....++|...... ...+++.|++
T Consensus 747 ~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e-~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~ 825 (1010)
T KOG1991|consen 747 SACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVE-TSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQ 825 (1010)
T ss_pred HHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHH
Confidence 7899999999999888888888888888877766321 23345555555555555666654433 4568899999
Q ss_pred HhccCCChHHHHHHHHHHHHHHhh--CchhhHhhHHHHHHHhhccC
Q 002921 801 ALSMIRDDTEKEDAFRGLCAMVKA--NPSGALSSLVFMCRAIASWH 844 (865)
Q Consensus 801 ~l~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~~~~~~~~~~ 844 (865)
.+.......+|+.++.+++.++.. .|+.....+.++++++....
T Consensus 826 ~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~ 871 (1010)
T KOG1991|consen 826 FINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELL 871 (1010)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 887766678999999999999998 34445566777777766543
No 6
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=2.7e-36 Score=316.55 Aligned_cols=741 Identities=19% Similarity=0.264 Sum_probs=527.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc---------
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~--------- 85 (865)
+.+..+|.+.+|||+. +|.+||.+|+++...++|..+|.++..+ +..+.+.||.|.+.|++.+.+||..
T Consensus 4 ~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 4689999999999999 9999999999999999999999999884 5678999999999999999999985
Q ss_pred -CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 86 -~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
.+.+.|..||+.+++++-+++..+|+.++.+++.|+..++|+.||++++.+.+++.+.+.+..++|+++|..+..+...
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHh---cCCCHHHHHHH--HHHHHHHhcccc-------HHhHHh----HHHHHHHHHH
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLS--LGSVNQFIMLMP-------SALFVS----MDQYLQGLFL 228 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~vr~~a--~~~l~~~~~~~~-------~~~~~~----~~~~l~~l~~ 228 (865)
...... .+-.++.+.... ...+...|..+ .+.+.++...+. ...... +..++..+..
T Consensus 162 ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 162 EEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211110 122333333333 33333444333 355555543321 111122 3333333333
Q ss_pred hhC--C-CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhc----------------------CCCC------HH
Q 002921 229 LSN--D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTD------DD 277 (865)
Q Consensus 229 ~~~--~-~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~----------------------~~~~------~~ 277 (865)
.++ + .+...|....+++..+.++.|..+.+++...++..++.. .+.+ +.
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 322 2 245788889999999999999988888776666555431 0112 22
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (865)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (865)
.....++|+..++...-..+.++..++.+++.+..++..+++.++.|.+|++. ++ .++
T Consensus 315 l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~-------fV---------------~dE 372 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQ-------FV---------------ADE 372 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHH-------hh---------------ccC
Confidence 34577888888876532344455566777888888888899999999887652 11 111
Q ss_pred CccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc-------CCCcchhHHHHHHHHHHHHHhchhhhhhcc
Q 002921 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-------SGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (865)
Q Consensus 358 ~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 430 (865)
++. +..|..+...+-.+...+|.+.+..+.......++. .+..||+..++.+.+......+ +.....
T Consensus 373 d~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~ 446 (1005)
T KOG2274|consen 373 DDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDK 446 (1005)
T ss_pred CCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHH
Confidence 111 356788888888888888887766666665444432 2234588888888887776632 223344
Q ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Q 002921 431 LSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 431 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~ 508 (865)
+..++..+...+. +..|..-.+++|+++.+++... ...+.+..++...+..+. |..+.+|.+|+.++..++
T Consensus 447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~- 519 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC- 519 (1005)
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-
Confidence 5555556666654 4567666699999998888754 356677777777777766 556788999988887777
Q ss_pred HhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHH
Q 002921 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLE 587 (865)
Q Consensus 509 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~ 587 (865)
..+.+.++.|.++..|..+..+.++.+...+.+++..+++. .+++.. ..-..+.|.++..+...+ +|+.+ ..+-+
T Consensus 520 -~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~a-s~~skI~P~~i~lF~k~s-~DP~V~~~~qd 595 (1005)
T KOG2274|consen 520 -KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAA-SMESKICPLTINLFLKYS-EDPQVASLAQD 595 (1005)
T ss_pred -CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhhh-hhhcchhHHHHHHHHHhc-CCchHHHHHHH
Confidence 34667889999999999999988888988899999877763 333331 344567777777776655 56655 44555
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHH
Q 002921 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDM 667 (865)
Q Consensus 588 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~ 667 (865)
++..+.. ......|+....+|.+++++..... . ........+++.+.++++.-++.....+-. ..+|.
T Consensus 596 ~f~el~q-~~~~~g~m~e~~iPslisil~~~~~------~----~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~Fpa 663 (1005)
T KOG2274|consen 596 LFEELLQ-IAANYGPMQERLIPSLISVLQLNAD------K----APAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPA 663 (1005)
T ss_pred HHHHHHH-HHHhhcchHHHHHHHHHHHHcCccc------c----cCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHH
Confidence 6665555 3345667788888888888875421 0 013456678899999999877765443322 37777
Q ss_pred HHHH-hcCCChhHHHHHHHHHHHHHhhchhhhHhh-------HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH---
Q 002921 668 LLQC-CMDDASDVRQSAFALLGDLARVCPVHLQAR-------LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA--- 736 (865)
Q Consensus 668 l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~--- 736 (865)
+.+| ++.++....+.+-+|+..++....+++..| ++.+|..+.+.|+.. +.+.++..+|.++
T Consensus 664 Vak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~-------~sds~a~~VG~lV~tL 736 (1005)
T KOG2274|consen 664 VAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE-------TSDSAAAFVGPLVLTL 736 (1005)
T ss_pred hHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc-------cchhHHHHHhHHHHHH
Confidence 7776 456788889999999999998866665544 456888888666543 4455555667654
Q ss_pred -HhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccc------------ccHHHHHHHHHHHhc
Q 002921 737 -VKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVS------------PHMEHFMQPWCIALS 803 (865)
Q Consensus 737 -~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------~~~~~~l~~~~~~l~ 803 (865)
.+.+..+.|.+.+|+..++..+...+ ..++.++.+.+++.|...+++.+. |-+..++..|++..+
T Consensus 737 it~a~~el~~n~d~IL~Avisrmq~ae--~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqh 814 (1005)
T KOG2274|consen 737 ITHASSELGPNLDQILRAVISRLQQAE--TLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQH 814 (1005)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhh
Confidence 55677888999999999999998876 467899999999999865443322 345679999999886
Q ss_pred cCCChHHHHHHHHHHHHHHhh
Q 002921 804 MIRDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 804 ~~~~~~~~~~~~~~l~~l~~~ 824 (865)
......+++...+++|.++++
T Consensus 815 l~~g~ye~kv~i~alc~al~~ 835 (1005)
T KOG2274|consen 815 LYFGEYEGKVSIKALCKALQH 835 (1005)
T ss_pred hhhhhhhchhhHHHHHHHHHh
Confidence 666666777777777777775
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-35 Score=319.36 Aligned_cols=711 Identities=19% Similarity=0.205 Sum_probs=527.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCC--------cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh---
Q 002921 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPD--------FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT--- 81 (865)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~--------~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~--- 81 (865)
++.+..++..+...++...-+.+.+.|.++.. .|. .+++.+.|.. |++.+..+|+.|..++-.+...
T Consensus 204 lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~-n~~l~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 204 LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK-NKELENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHHHHHHHHHHhhHH
Confidence 34556666666544433245677777877653 443 3455566655 5789999999999988766654
Q ss_pred hhCcCCHhHHHHHHHHHhhhhhCC---------------C-hhHHHHHHHHHHHHHHhcC-cCChHHHHHHHHHhhccCC
Q 002921 82 AYKSMSPSNQQYIKSELLPCLGAA---------------D-RHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSND 144 (865)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~l~~~---------------~-~~vr~~~a~~l~~i~~~~~-~~~w~~ll~~l~~~l~~~~ 144 (865)
.-+..++ ....+...++..+.+. + ......+.+++..++.+.+ ....|.+++.+.+.++|++
T Consensus 283 ~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 283 MCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred Hhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC
Confidence 1112222 4455555556555421 1 2256678889999999985 4567999999999999999
Q ss_pred hhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHH-
Q 002921 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL- 223 (865)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l- 223 (865)
|..|++|+.+|+.+.+++.+.+.. .++.+++.++++++|+++.||.+|+.+++.+...+++.+..+....+
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~--------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIG--------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH--------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 999999999999999999987753 47999999999999999999999999999999998888877766554
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHHHh-hchhhhhhhHHHHHHHH-hhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002921 224 QGLFLLSNDP-SAEVRKLVCAAFNLLIE-VRPSFLEPHLRNLFEYM-LQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (865)
Q Consensus 224 ~~l~~~~~~~-~~~~r~~~~~~l~~l~~-~~~~~~~~~l~~l~~~l-~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (865)
+.+...+.+. +..+...+..++..+.+ ..++.+.+|++.+++.. ....++..+.++..++..+.+++.. ....+.
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A--A~~~F~ 511 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA--AQEKFI 511 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--HhhhhH
Confidence 4666666654 45677777777766665 45678899999999954 4455667788999999999999987 778899
Q ss_pred hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 002921 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (865)
Q Consensus 301 ~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (865)
||++.++|.+...+..++++. ...+|....+|++.++.
T Consensus 512 pY~d~~Mp~L~~~L~n~~~~d------------------------------------------~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 512 PYFDRLMPLLKNFLQNADDKD------------------------------------------LRELRGKTMECLSLIAR 549 (1075)
T ss_pred hHHHHHHHHHHHHHhCCCchh------------------------------------------hHHHHhhHHHHHHHHHH
Confidence 999999999988877654210 11378888999999999
Q ss_pred hhCc-chhhhh---HHHHHHh---hccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC--------C-
Q 002921 381 VFGD-EILPTL---MPVIQAK---LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--------D- 444 (865)
Q Consensus 381 ~~~~-~~~~~~---~~~l~~~---l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--------d- 444 (865)
..|+ .+.+.. ++.+... ..+.+ -..|...+.+.+.+++..++.+.++++.++|.++...+ |
T Consensus 550 AVGke~F~~~a~eliqll~~~~~~~~~~d---d~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 550 AVGKEKFLPLAEELIQLLLELQGSDQDDD---DPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred HhhhhhhhHhHHHHHHHHHhhcccchhhc---cccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 9995 444433 3333332 22233 67788888899999999999999999999999887654 0
Q ss_pred -------------------C-C-------hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHH
Q 002921 445 -------------------K-F-------PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQ 496 (865)
Q Consensus 445 -------------------~-~-------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr 496 (865)
. + -.=+..||.+|+.++...+. ...+|..+++...+..+. ..+..||
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~-----~F~pYve~v~~l~v~~l~f~fhdgVR 701 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE-----AFAPYVEQVVELMVPLLKFYFHDGVR 701 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHHhhhhhHHH
Confidence 0 0 11257799999999998875 367888888884444444 4577899
Q ss_pred HHHHHHHHHHHHHhc-------cchhhhHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHH
Q 002921 497 EAACSAFATLEEEAA-------EELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (865)
Q Consensus 497 ~~a~~al~~l~~~~~-------~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 568 (865)
.+|+.++..+++... ..+.+....+.+.++..+.+... .+....+++++...+.+|...-.+++...+...+
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~ 781 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL 781 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 999999999987642 22344445566666666665444 4455788999999999997655556666666555
Q ss_pred HHHHhcC-------------CCC-----------Ccch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 002921 569 IAKWQQL-------------PNS-----------DKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (865)
Q Consensus 569 ~~~l~~~-------------~~~-----------~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (865)
...+.+. .+. +..+ ..+.+++..+++..+..|.|++..+.|.+++.+....
T Consensus 782 ~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~---- 857 (1075)
T KOG2171|consen 782 LAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK---- 857 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC----
Confidence 4444321 000 0112 3556778888899999999999999999998887542
Q ss_pred cccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH
Q 002921 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (865)
Q Consensus 624 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (865)
-.. ++.++-.++.+++.+|+...+|.+. ++|.++.++.+.+++||++|...+|.++.+.|..+.|.+.
T Consensus 858 ---------~~~-r~~av~~~~d~ie~~~~a~~~~~~~--~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~ 925 (1075)
T KOG2171|consen 858 ---------TVA-RQWAVCIFDDLIEGCGEASAKYKER--FLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCS 925 (1075)
T ss_pred ---------cHH-HHHHHHHHHHHHHhcccccchHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 123 7778888999999999999999876 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC--CchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 704 DFLDIAAKQLNTPKLK--ETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
..+|.+...++....+ ++....+||+.+++.++.+.+..+ | +++++..++..+--..+ ...-......++.|..
T Consensus 926 ~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i-~-vdqvl~~~l~~LPl~~D--~eEa~~iy~~l~~L~e 1001 (1075)
T KOG2171|consen 926 EALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI-P-VDQVLPAWLSWLPLKED--KEEAVPIYTFLSDLYE 1001 (1075)
T ss_pred HHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC-c-HHHHHHHHHHhCCCccc--hhhhhhHHHHHHHHHH
Confidence 9999999999887544 144567899999999999887766 5 88888888877633321 1222345678899998
Q ss_pred hCCCcccc----cHHHHHHHHHHHhccCC
Q 002921 782 VCPELVSP----HMEHFMQPWCIALSMIR 806 (865)
Q Consensus 782 ~~~~~~~~----~~~~~l~~~~~~l~~~~ 806 (865)
.++..+.. .+|.++..+...+.+.+
T Consensus 1002 ~n~p~v~~~~n~~ip~i~~v~~~~~~~~~ 1030 (1075)
T KOG2171|consen 1002 SNHPIVLGPNNQNIPKILSVCAESLADKK 1030 (1075)
T ss_pred hCCCeeeCCCcccchHHHHHHHhhhhccC
Confidence 77766665 56777777777666543
No 8
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-36 Score=310.62 Aligned_cols=752 Identities=17% Similarity=0.241 Sum_probs=526.5
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc-------
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------- 85 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~------- 85 (865)
.++++...|.++.+||++ +|+.||+.|+....+++|...+++++.+ +..++++|..|++.+||.++++|..
T Consensus 3 ~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 578899999999999999 9999999999999999999999999985 5779999999999999999999964
Q ss_pred CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh
Q 002921 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (865)
+.++.++.||..++.++-+....+..++..+++.|+++|+|+.||.|+|.+...+++.|-.+-.+.+..-.++++.+...
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 77889999999999999999999999999999999999999999999999999999999888888888888899998876
Q ss_pred cccCCCCCC----------CcchhhhHHHHHHHhcC--CCH-------HHHHHHHHHHHHHh-ccccHHhHHhHHHHHHH
Q 002921 166 LDSDVPGLA----------ECPINIFLPRLLQFFQS--PHT-------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQG 225 (865)
Q Consensus 166 ~~~~~~~~~----------~~~~~~l~~~l~~~l~~--~~~-------~vr~~a~~~l~~~~-~~~~~~~~~~~~~~l~~ 225 (865)
++++ .++ ...+-+++.......+. .+. ++....++.+.++. +.+|+.+.+++..+|+.
T Consensus 161 frSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 161 FRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 6553 111 01111222222222211 122 23444555666654 34788888999999999
Q ss_pred HHHhhCC--------C-C----HHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCC-----CCHHHHHHHHHHHH
Q 002921 226 LFLLSND--------P-S----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWH 287 (865)
Q Consensus 226 l~~~~~~--------~-~----~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~-----~~~~v~~~a~~~l~ 287 (865)
+.+.+.- . + .++|...|+.+.-.+..+++.+++++++++..++..+.+ ..+..+..|++|+.
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt 318 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLT 318 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 8887641 1 1 457888999999999999999999999999888877543 24667889999999
Q ss_pred HhhccCCchhhH--HhhhhhHHHHH-HhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 002921 288 SYFEAQLPHENL--KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (865)
Q Consensus 288 ~l~~~~~~~~~~--~~~~~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (865)
.+++.+-..+.+ ...+.++.... ++.+...++|+|.+|++|.+ |+| .+.|..|-|
T Consensus 319 ~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple-------YiR-----------RDlEGsDvd---- 376 (960)
T KOG1992|consen 319 SVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE-------YIR-----------RDLEGSDVD---- 376 (960)
T ss_pred HHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH-------HHH-----------HhcccCCcc----
Confidence 998863332221 23444555443 47777778888888877654 444 122222222
Q ss_pred ccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhc----cCCCcchhHHHHHHHHHHHHHhchhh---------hhhccH
Q 002921 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCIK---------GLYPHL 431 (865)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~l 431 (865)
+.|++|.++++-+++.+...+.+.+...+...++ ++ +.||+.++.++..+.+++..... .+.+..
T Consensus 377 -TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP-S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 377 -TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP-SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred -hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC-CccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 4689999999999999966666555555555554 22 23499999999999888765321 111112
Q ss_pred HHHHHHHHhccC----CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 432 ~~i~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
+-....+.+.|. .++|.+|..++.-+--+-.. -..+++..+++.++..+..++..|...|+.++..+.
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q--------l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ--------LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeeccc--------CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 222333444443 46788998886544333332 346678889999999999989999999999999887
Q ss_pred HHh---------ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCC
Q 002921 508 EEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS 578 (865)
Q Consensus 508 ~~~---------~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 578 (865)
... ...+.||...++..+++.++.+....-.....+|..+......... |+.+.+++.+.+.+.....+
T Consensus 527 ~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~--p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 527 TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII--PHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh--hhhhHHHHHHHHHHHHHhcC
Confidence 543 2457899999999999888766554334556666666655555554 77888888887777664422
Q ss_pred --Ccch-hhHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHh
Q 002921 579 --DKDL-FPLLECFTSIAQALGAG----FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (865)
Q Consensus 579 --~~~~-~~~~~~l~~l~~~~~~~----~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~ 651 (865)
++.. ..++++++.+.+..+.. +..+-..++|.+..+|.+.. .++.-.++++++-+++..
T Consensus 605 Ps~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--------------~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 605 PSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--------------QEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 2333 57888888888877652 45566777777777777543 267778999999999987
Q ss_pred hhhhhhhcccchHHHH-HHHHhcCCChhHHHHHHHHHHHHHhhchhhhH--hhHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 002921 652 GSGIESLVAQSNLRDM-LLQCCMDDASDVRQSAFALLGDLARVCPVHLQ--ARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (865)
Q Consensus 652 ~~~~~~~~~~~~l~~~-l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~~~a 728 (865)
++...+.+.+ ++|. +...+.++...+ -+.+.++..+++.....+. ..+..++..+-+.+.+. ..-..+
T Consensus 671 ~~~ip~~~~~--l~~~lLsp~lW~r~gNi-palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk------a~Dh~G 741 (960)
T KOG1992|consen 671 SGTIPDSYSP--LFPPLLSPNLWKRSGNI-PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK------ANDHHG 741 (960)
T ss_pred CCCCchhHHH--HHHHhcCHHHHhhcCCc-HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc------ccchhH
Confidence 7743322222 3333 333444444444 3566778888887766665 56777888887777665 223567
Q ss_pred HHHHHHHHHhcc-ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCc-cccc--------HHHHHHH-
Q 002921 729 CWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL-VSPH--------MEHFMQP- 797 (865)
Q Consensus 729 ~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~--------~~~~l~~- 797 (865)
...+..++.+.+ ..+.||..+++..+...+.+++ .+......+.+++....+..+. +... +.+++..
T Consensus 742 F~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqnsk--T~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ 819 (960)
T KOG1992|consen 742 FYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSK--TEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENF 819 (960)
T ss_pred HHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHh
Confidence 788888888876 4578999999999999999886 3555666666666555433221 1111 1222222
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhCch
Q 002921 798 WCIALSMIRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 798 ~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
|+..++.....-+|+....+...++...|.
T Consensus 820 ii~~l~~i~~~~~rk~~avg~~~l~~e~~~ 849 (960)
T KOG1992|consen 820 IIPELPKIILRVDRKIMAVGATGLLTETPE 849 (960)
T ss_pred ccccchhhhhhhhHHHHHHHHhhhhhhcHH
Confidence 222334444555677766666666665443
No 9
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-36 Score=307.55 Aligned_cols=767 Identities=14% Similarity=0.171 Sum_probs=497.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc-----CCHhHH
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~-----~~~~~~ 91 (865)
+.++|+++.|||.. ++|.||++|++.+++|||...|..|..+ ++.+..+|.+|++.+||.|.++|+. +++|.|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~-~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLS-KTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhc-cccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57889999999999 9999999999999999999999999874 6888999999999999999999985 899999
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC----ChhHHhHHHHHHHHHHhhchhhcc
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~----~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
+.||..++....++++.+..+.|.+++.||+.|+|..||+++|.|.+.+++. |....+..+..+..+.+..+...-
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999876 777888899999999988765321
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCC------------C-------HHHHHHHHHHHHHHhcc---ccH--HhHHhHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSP------------H-------TSLRKLSLGSVNQFIML---MPS--ALFVSMDQYL 223 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~------------~-------~~vr~~a~~~l~~~~~~---~~~--~~~~~~~~~l 223 (865)
...+.+|....+.+++.+...+-++ + .+.-.-+++++..++.+ .|. ++.+.+..++
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~ 239 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFL 239 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH
Confidence 1112233233344444333332221 1 12223455666655533 121 2334444443
Q ss_pred HH----HHHhhCCCCH----HHHHHH----HHHHHHHHhhchhhhhh--hHHHHHHHHhhhcCCC-------------CH
Q 002921 224 QG----LFLLSNDPSA----EVRKLV----CAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDT-------------DD 276 (865)
Q Consensus 224 ~~----l~~~~~~~~~----~~r~~~----~~~l~~l~~~~~~~~~~--~l~~l~~~l~~~~~~~-------------~~ 276 (865)
+. +...++.... ++-... .+++..+.+..|-.+.. ..+..+++.+....+. -+
T Consensus 240 e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe 319 (978)
T KOG1993|consen 240 ELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFE 319 (978)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHH
Confidence 32 1112222111 111222 33444555554444433 2333333333322211 23
Q ss_pred HHHHHHHHHHHHhhccC--C--------------chh----h-----HHhhhhhHHHHHH-hhccCChhhhhhhhhcccC
Q 002921 277 DVALEACEFWHSYFEAQ--L--------------PHE----N-----LKEFLPRLVPVLL-SNMIYADDDESLVEAEEDE 330 (865)
Q Consensus 277 ~v~~~a~~~l~~l~~~~--~--------------~~~----~-----~~~~~~~l~~~ll-~~l~~~~~d~~~~~~~~~~ 330 (865)
+...+++..+..+...+ . ..+ . ..+-+..++..++ .++..+++|.++|..||.+
T Consensus 320 ~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~ 399 (978)
T KOG1993|consen 320 EFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEG 399 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHH
Confidence 44455555554332210 0 000 0 0112334555555 5677889999999888742
Q ss_pred CCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCC------Cc
Q 002921 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG------DE 404 (865)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~------~~ 404 (865)
...|+...+-.+++|-+|..++..+...+++-..|.++..+.+..+... -.
T Consensus 400 -----------------------~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~ 456 (978)
T KOG1993|consen 400 -----------------------WVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLT 456 (978)
T ss_pred -----------------------hhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHH
Confidence 0001111112337999999999999999999989999888866544321 01
Q ss_pred chhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCC---ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHH
Q 002921 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (865)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 481 (865)
..-.+.|.+.++|.-+....+.+ ++-..+...+++.+... ...+|++.+|.+|+....- ...+...-+.
T Consensus 457 a~L~KDAiYaa~g~~a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq-------~~~e~k~l~Y 528 (978)
T KOG1993|consen 457 ALLLKDAIYAAFGLAAYELSNIL-DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQ-------QKLELKPLLY 528 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhee-------chHhHHHHHH
Confidence 14567777778887776655432 33344555566655433 3467899999999877631 2345556777
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHHh---ccchhhhHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHHHhcccCC
Q 002921 482 MGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELN 556 (865)
Q Consensus 482 ~~l~~~l~d~-~~~vr~~a~~al~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~ 556 (865)
.+++..++|. +..||..++.++...++.. .+.+.||++.+...+.+++..... +.+..++..++.++..+++...
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 8888889987 7899999999999999875 688999999999999999987654 4566889999999999999987
Q ss_pred chhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 002921 557 QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKE 635 (865)
Q Consensus 557 ~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 635 (865)
||...++..+-..|+..+ +++-+ .+++.++.+++.++|..-.++-+-++|.+ +-+. |+. ..+..-
T Consensus 609 --P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI----el~~----D~~---sP~hv~ 674 (978)
T KOG1993|consen 609 --PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI----ELST----DPS---SPEHVY 674 (978)
T ss_pred --HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH----HHhc----CCC---CCceee
Confidence 899999988878887765 44444 68899999999999985444333333322 2211 111 111223
Q ss_pred hhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhh-HhhHHHHHHHHHHhcC
Q 002921 636 FVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL-QARLSDFLDIAAKQLN 714 (865)
Q Consensus 636 ~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~ 714 (865)
+.+.++++|+........-...++ .++|.+...++.. .+....++..+..++.-.+..+ ..|...+...+.+.+.
T Consensus 675 L~EDgmeLW~~~L~n~~~l~p~ll---~L~p~l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKLTPELL---LLFPHLLYIIEQS-TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred hhhhHHHHHHHHHhcccccCHHHH---HHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 556788889888875432111122 2556665555432 3334455566655554433322 3444455555555443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccccc
Q 002921 715 TPKLKETVSVANNACWAIGELAVKAR----QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH 790 (865)
Q Consensus 715 ~~~~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 790 (865)
+- ..+--...+..+..++..-+ -.+.|.++.++..+ +.+++ .+-+.-..+..+||+...+|+.+...
T Consensus 751 dv----r~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I--~~~~~---yP~~~~~yl~vvaRi~l~n~~~~msv 821 (978)
T KOG1993|consen 751 DV----RNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSI--AENDK---YPYVMGEYLLVVARISLRNPSLFMSV 821 (978)
T ss_pred Hh----hHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHH--HhCCC---CchhHHHHHHHHHHHHhcChHHHHHH
Confidence 32 11222233333333333221 12233344444433 11222 34455666778899998888765543
Q ss_pred ----------HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhcc
Q 002921 791 ----------MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASW 843 (865)
Q Consensus 791 ----------~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~ 843 (865)
+..++..|+...++..+.+.|+....++.++++.+...++..|++|++.+.+-
T Consensus 822 lqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~ 884 (978)
T KOG1993|consen 822 LQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEV 884 (978)
T ss_pred HHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHH
Confidence 34688999999999999999999999999999998888999999999887653
No 10
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-33 Score=282.97 Aligned_cols=751 Identities=14% Similarity=0.177 Sum_probs=496.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc---------
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~--------- 85 (865)
+++++++.++.++|.. +|+.||+.|++++++|||+.++++++.++ ..++.+|+.|++.+||.|.+.|+.
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 5789999999999999 99999999999999999999999999864 689999999999999999999997
Q ss_pred CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
..++.|+.++++++......+...|...-.++..|...+++ +.|+ +.|.....+.+.+..+...|+.++.++++...-
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 33456777777777766666777787777777788888855 8999 999999999999999999999999999998765
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcC----C---CHHHHHHHHHHHHHHhcc-ccHHhHH--hHHHHHHHHHHhhCCC-
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQS----P---HTSLRKLSLGSVNQFIML-MPSALFV--SMDQYLQGLFLLSNDP- 233 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~----~---~~~vr~~a~~~l~~~~~~-~~~~~~~--~~~~~l~~l~~~~~~~- 233 (865)
....+.+. .......++|.+.+.-.. + +.++....++.+...+.+ +|+.+.. .+..+.+..+..++.|
T Consensus 160 k~ndeq~d-i~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDEQVD-ILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccchHhh-HHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 44332111 112344555555544322 2 345666677777776654 4554331 2223333333332211
Q ss_pred -------CH---------HHHHHHHHHHHHHHhhchhh--------hhhhHHHHHHHHhhh----c--CC--C---CHHH
Q 002921 234 -------SA---------EVRKLVCAAFNLLIEVRPSF--------LEPHLRNLFEYMLQV----N--KD--T---DDDV 278 (865)
Q Consensus 234 -------~~---------~~r~~~~~~l~~l~~~~~~~--------~~~~l~~l~~~l~~~----~--~~--~---~~~v 278 (865)
++ ++++.|+..|..+...+.+. +....-..++.+++. . +. . .+ .
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd-~ 317 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSD-I 317 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecch-H
Confidence 22 34567777777766544321 111111233333322 1 11 1 22 2
Q ss_pred HHHHHH-HHHHhhccCCchhhHHhhhhhHHHHH-HhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 002921 279 ALEACE-FWHSYFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (865)
Q Consensus 279 ~~~a~~-~l~~l~~~~~~~~~~~~~~~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (865)
....+. |+..++..+..+..++||++-++... ++.++.++++++.|++||++ |+|.++.. .+
T Consensus 318 ~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~e-------yirry~df--------~d- 381 (970)
T COG5656 318 ELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDE-------YIRRYYDF--------FD- 381 (970)
T ss_pred HHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHH-------HHHHhcch--------hc-
Confidence 344444 44445555568999999999998765 59999999999999998875 55544322 11
Q ss_pred CCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc-----CCCcchhHHHHHHHHHHHHHhchh--hhhhc
Q 002921 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCI--KGLYP 429 (865)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~ 429 (865)
+..+.-.+|..++-.++...++..++.+++++...+.. ++.+|.+..++|+..++++..-.. .....
T Consensus 382 ------~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an 455 (970)
T COG5656 382 ------NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAAN 455 (970)
T ss_pred ------CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHH
Confidence 11234456777777777777888888999999888842 222458899999999999887322 22233
Q ss_pred cHHH-HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 430 ~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
.++. +++.+.+.++++...+|.+||.+++.+.+.++ ......++++....++++++-.|+..|+.|+..++.
T Consensus 456 ~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 456 VMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred HHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 3443 78889999999999999999999999977665 456677888999999999989999999999999987
Q ss_pred Hh--ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH--------HhcCCC-
Q 002921 509 EA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK--------WQQLPN- 577 (865)
Q Consensus 509 ~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~--------l~~~~~- 577 (865)
+- .+.+..|+|.+|+.++.+-+..+.+.+.+++ ..++....++.. ||...++..+.+. +++.++
T Consensus 529 ~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM---e~fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d~ 603 (970)
T COG5656 529 NEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM---ESFVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSDT 603 (970)
T ss_pred chhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH---HHHHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 64 5678899999999999998888777665444 455666666666 7777777666552 222211
Q ss_pred ----CCcch--hhHHHHHHHHHHHhcc--ccccchHHHHHHHHHH-HHHHHHHhhcccccCCCCCcchhHhhhhhhhHHH
Q 002921 578 ----SDKDL--FPLLECFTSIAQALGA--GFTQFAQPVFQRCINI-IQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (865)
Q Consensus 578 ----~~~~~--~~~~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~ 648 (865)
+|+++ ..++.++..+.-++.. .+..|+.+..-.+++. |.+. -.++...+++.+.+..
T Consensus 604 ~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~--------------i~dfy~Ea~dildg~t 669 (970)
T COG5656 604 SSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE--------------ISDFYQEALDILDGYT 669 (970)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhhh
Confidence 12222 2345556666655543 2223333221112222 2221 1255556777666655
Q ss_pred HHhhhhhhhhcccchHHHHHHHHhcCCCh-hHHHHHHHHHHHHHhhchhhhH---hhHHHHHHHHHHhcCCCCCCCchhH
Q 002921 649 EGLGSGIESLVAQSNLRDMLLQCCMDDAS-DVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSV 724 (865)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~ 724 (865)
-..+. ..|.... ++.++..++.+... .-...+..++..++.+.+..+. -|...+..+...++.++.. ..+-
T Consensus 670 f~ske-I~pimwg--i~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n--~l~D 744 (970)
T COG5656 670 FMSKE-IEPIMWG--IFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN--FLED 744 (970)
T ss_pred HHHHH-hhhhhhH--HHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhh--hHHH
Confidence 44333 3355544 88888888877653 4456677788999988765553 3455555666666666521 2345
Q ss_pred HHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHH-HHhhhhhCCCcc------cccHHHHHH
Q 002921 725 ANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAIT-LGRLAWVCPELV------SPHMEHFMQ 796 (865)
Q Consensus 725 ~~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~------~~~~~~~l~ 796 (865)
+..+|..+..++.+.++. ...|++-+.......+..-.+ ....+.-++.. +..+. ..|-.. ..++..++.
T Consensus 745 ~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dE-lg~~sv~aleliinnli-~~P~eTLqiLe~qg~l~~FF~ 822 (970)
T COG5656 745 FIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDE-LGPASVYALELIINNLI-LRPKETLQILEEQGYLQSFFE 822 (970)
T ss_pred HHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhcccc-ccchhhhHHHHHHHHHh-cChHHHHHHHHHcCcHHHHHH
Confidence 667888888888888764 344665444433322222111 11122222222 22222 233221 356778999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhC
Q 002921 797 PWCIALSMIRDDTEKEDAFRGLCAMVKAN 825 (865)
Q Consensus 797 ~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 825 (865)
.|++..++.+...+++.++.++..++...
T Consensus 823 ~wf~~ipkfkrvhdkKLsvlaIltii~l~ 851 (970)
T COG5656 823 KWFSQIPKFKRVHDKKLSVLAILTIIRLQ 851 (970)
T ss_pred HHHhcCcchhhhhhhHhHHHHHHHHHHhc
Confidence 99999999888899999999999999874
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=292.96 Aligned_cols=697 Identities=17% Similarity=0.201 Sum_probs=519.2
Q ss_pred cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCC
Q 002921 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG 128 (865)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~ 128 (865)
.+.-++++|....+++.++|..+-..+.+.-. + ++.-.++. -++--+.+.+..+|..++.++.+=.+..+...
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-----~-pdfnnYL~-~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-----F-PDFNNYLI-YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-----c-cchhceee-EEEecccccchhHHHHhhhhHhccccccccCC
Confidence 34455666665457788888877666543221 1 11111110 11112234566778877777766555432221
Q ss_pred hHH----HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 129 WLE----LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 129 w~~----ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
=++ +-..+++.+.+.++.+|...-.++..++...+- +..++++|.+.+.|.+++......|+.+|
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-----------~~wpelLp~L~~~L~s~d~n~~EgA~~AL 152 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-----------QHWPELLPQLCELLDSPDYNTCEGAFGAL 152 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-----------ccchhHHHHHHHHhcCCcccccchhHHHH
Confidence 122 234566777777887776665556555554332 34699999999999999999999999999
Q ss_pred HHHhccccHHhH-----HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHH
Q 002921 205 NQFIMLMPSALF-----VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (865)
Q Consensus 205 ~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~ 279 (865)
..+++-.+..+. ..+..+++.+++..+++++.+|..++.|++.++-..+..+..++++.++.+.....|.+++||
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVR 232 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVR 232 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 999986554333 346778999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 002921 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (865)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (865)
...+..+.-+.+. ....+.|+++.+++-+++.-+..++.
T Consensus 233 k~vC~alv~Llev--r~dkl~phl~~IveyML~~tqd~dE~--------------------------------------- 271 (885)
T KOG2023|consen 233 KNVCRALVFLLEV--RPDKLVPHLDNIVEYMLQRTQDVDEN--------------------------------------- 271 (885)
T ss_pred HHHHHHHHHHHHh--cHHhcccchHHHHHHHHHHccCcchh---------------------------------------
Confidence 9998888887776 67778899999999887765544332
Q ss_pred cccccccHHHHHHHHHHHHHhhh-Ccc----hhhhhHHHHHHhh----------cc--C---------------------
Q 002921 360 DIVNVWNLRKCSAAALDVLSNVF-GDE----ILPTLMPVIQAKL----------SA--S--------------------- 401 (865)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~-~~~----~~~~~~~~l~~~l----------~~--~--------------------- 401 (865)
+.-.|.++.-.+++.- ..+ .++.++|.+.+.+ .+ +
T Consensus 272 -------VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~ 344 (885)
T KOG2023|consen 272 -------VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH 344 (885)
T ss_pred -------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc
Confidence 2233444444443332 111 1222333332211 10 0
Q ss_pred ---------C-C----------cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhH
Q 002921 402 ---------G-D----------EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 402 ---------~-~----------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (865)
+ + ..|..|..+..+|..++.-+++. .++.++|.+-..|.++.+.+|+++..++|.++
T Consensus 345 ~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 345 GNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLPILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred cCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 0 0 12999999999999999877754 46778888888899999999999999999999
Q ss_pred HHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccchhhHHHH
Q 002921 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (865)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 540 (865)
+.+.. ...++++.+++.++.+|.|..+-||.-.|++|+.+.... .+.-..|+.+++..+++.+-+.+.++++.+
T Consensus 422 EGcM~-----g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAA 496 (885)
T KOG2023|consen 422 EGCMQ-----GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAA 496 (885)
T ss_pred HHHhh-----hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 99875 367899999999999999999999999999999998765 344446788888888888878888999999
Q ss_pred HHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHH
Q 002921 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT--QFAQPVFQRCINIIQTQ 618 (865)
Q Consensus 541 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~ 618 (865)
+.+++++-+..|++.. ||+..++..+...+... ..+.+.-+..++|.++.++|..+. .|++.++|.+++-.+.-
T Consensus 497 csAfAtleE~A~~eLV--p~l~~IL~~l~~af~kY--Q~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l 572 (885)
T KOG2023|consen 497 CSAFATLEEEAGEELV--PYLEYILDQLVFAFGKY--QKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL 572 (885)
T ss_pred HHHHHHHHHhccchhH--HHHHHHHHHHHHHHHHH--hhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc
Confidence 9999999999999998 89999999999998764 344556677889999999998553 57888999887765542
Q ss_pred HHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhccc--chHHHHHHHHhc-------C-----CChhHHHHHH
Q 002921 619 QLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ--SNLRDMLLQCCM-------D-----DASDVRQSAF 684 (865)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~-------~-----~~~~vr~~a~ 684 (865)
. +.|+++.- -++++++++.++|..|.||.+. ..-+.++-++++ + .+.+.-..++
T Consensus 573 s-----------d~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL 640 (885)
T KOG2023|consen 573 S-----------DSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL 640 (885)
T ss_pred C-----------cccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH
Confidence 1 22556544 6788999999999999998875 233344443322 1 2334445789
Q ss_pred HHHHHHHhhchhhhHhhHH--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCch
Q 002921 685 ALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSE 762 (865)
Q Consensus 685 ~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~ 762 (865)
.++..++...|..+.+.+. .++..+..+++++ -++||+.+...+|.+...+.+++.|+...++..+..-+...
T Consensus 641 DL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~----~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~- 715 (885)
T KOG2023|consen 641 DLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE----VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE- 715 (885)
T ss_pred HHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC----ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-
Confidence 9999999999988888775 4999999999998 78999999999999999999999999888877666433322
Q ss_pred hhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhh
Q 002921 763 ELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIR-DDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841 (865)
Q Consensus 763 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~ 841 (865)
.-++..||+.++|.++...+....+|+..++..++-.+.... +...-+...-.+..+-...|+.+.+++.+|++-+.
T Consensus 716 --~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 716 --NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred --hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 467889999999999998888888999999988888776533 33444455566777777789999999999988776
Q ss_pred c
Q 002921 842 S 842 (865)
Q Consensus 842 ~ 842 (865)
.
T Consensus 794 ~ 794 (885)
T KOG2023|consen 794 T 794 (885)
T ss_pred H
Confidence 5
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-29 Score=257.97 Aligned_cols=689 Identities=15% Similarity=0.209 Sum_probs=478.5
Q ss_pred hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH--hcCCCcHHHHHH----------------hhhcccCCCHHHHHHHH
Q 002921 13 GFNEICRLLEQQISP--SSTADKSQIWQQLQQY--SQFPDFNNYLAF----------------ILARAEGKSVEIRQAAG 72 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~--~~~p~~~~~l~~----------------il~~~~~~~~~~R~~a~ 72 (865)
..+++..+|...+.. ++...|..|--+|++- .++|+.-.-+.+ ++..-+++.+..+..|+
T Consensus 32 nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aa 111 (859)
T KOG1241|consen 32 NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAA 111 (859)
T ss_pred cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHH
Confidence 345555555555422 1223799999999873 245532111111 11101134444444555
Q ss_pred HHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHhcCcC----ChHHHHHHHHHhhccC--Ch
Q 002921 73 LLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN--DI 145 (865)
Q Consensus 73 ~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~l~~~l~~~--~~ 145 (865)
.++-..-.- .++...-..+...+..-..++ ...+|....+++|.|+..-.|+ ....++-.+.+..+.. +.
T Consensus 112 q~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~ 188 (859)
T KOG1241|consen 112 QCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSA 188 (859)
T ss_pred HHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCch
Confidence 444322110 133333344555555555544 4469999999999999885332 4456777788877765 55
Q ss_pred hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHH
Q 002921 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (865)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 225 (865)
++|.+|+.+|..-.+.....+.++. ..+.+++.+...-+.++.+++.+|+.||..++.. .+.+++.++..
T Consensus 189 ~vRLaa~~aL~nsLef~~~nF~~E~------ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L----yY~~m~~yM~~ 258 (859)
T KOG1241|consen 189 AVRLAALNALYNSLEFTKANFNNEM------ERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL----YYEFMEPYMEQ 258 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccHh------hhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8999999999888887776776542 3478888899999999999999999999999875 45555555433
Q ss_pred -HHH----hhCCCCHHHHHHHHHHHHHHHhhchh-------hh------------hhhHHHHHHHHhhhcCC----C---
Q 002921 226 -LFL----LSNDPSAEVRKLVCAAFNLLIEVRPS-------FL------------EPHLRNLFEYMLQVNKD----T--- 274 (865)
Q Consensus 226 -l~~----~~~~~~~~~r~~~~~~l~~l~~~~~~-------~~------------~~~l~~l~~~l~~~~~~----~--- 274 (865)
++. ...+.++++..++++.+..+++..-+ .. ..-++.++|.+++.+.. .
T Consensus 259 alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~D 338 (859)
T KOG1241|consen 259 ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDD 338 (859)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccc
Confidence 443 44577889999999999877653221 11 12234677777766521 1
Q ss_pred CHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCC
Q 002921 275 DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (865)
Q Consensus 275 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 354 (865)
+......|-.++.-+++. ..+.+-| .++|.+-+.+
T Consensus 339 dWnp~kAAg~CL~l~A~~--~~D~Iv~---~Vl~Fiee~i---------------------------------------- 373 (859)
T KOG1241|consen 339 DWNPAKAAGVCLMLFAQC--VGDDIVP---HVLPFIEENI---------------------------------------- 373 (859)
T ss_pred cCcHHHHHHHHHHHHHHH--hcccchh---hhHHHHHHhc----------------------------------------
Confidence 123444444444444333 2222211 2222221000
Q ss_pred CCCCccccccccHHHHHHHHHHHHHhhhCc----chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhh--h
Q 002921 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--Y 428 (865)
Q Consensus 355 ~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~ 428 (865)
..++|+.|.+|.-+++.+...-.. ..++..+|.+...+.++. -.+|.++.++||.+++.+++.. .
T Consensus 374 ------~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s---l~VkdTaAwtlgrI~d~l~e~~~n~ 444 (859)
T KOG1241|consen 374 ------QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS---LWVKDTAAWTLGRIADFLPEAIINQ 444 (859)
T ss_pred ------CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch---hhhcchHHHHHHHHHhhchhhcccH
Confidence 114589999999999888776643 445667888888888777 6777999999999999998655 3
Q ss_pred ccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCC----cchhhHHHHHHHHHHHHc--C-CCHHHHHHHHH
Q 002921 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ----NGREQFEKVLMGLLKRIL--D-TNKRVQEAACS 501 (865)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~--d-~~~~vr~~a~~ 501 (865)
.++..+++.++..++| +|+|-..+||++..+++.+.+..... ...++++.++..|++.-+ | .....|.+|..
T Consensus 445 ~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYE 523 (859)
T ss_pred hhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 5677789999999988 79999999999999999887642211 234688888888888654 3 35789999999
Q ss_pred HHHHHHHHhccchhhhH----HHHHHHHHHHhccc----ch-----hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHH
Q 002921 502 AFATLEEEAAEELAPRL----EIILQHLMMAFGKY----QR-----RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (865)
Q Consensus 502 al~~l~~~~~~~~~~~~----~~i~~~l~~~l~~~----~~-----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 568 (865)
+|..+++.+.+...|.+ ..++..|-..+++. .. ..+...+.+++.+.+.++.++. ++.+.+|..+
T Consensus 524 ALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~--~~~d~iM~lf 601 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIR--EVSDQIMGLF 601 (859)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccch--hHHHHHHHHH
Confidence 99999998876655443 34444444444411 11 2244678889999999999876 8999999999
Q ss_pred HHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHH
Q 002921 569 IAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (865)
Q Consensus 569 ~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l 647 (865)
+..++.. ....+ ..++-.++.++..+|+.|..|++.+.|.+..-|.... |..+-..+..+++.+
T Consensus 602 lri~~s~--~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-------------e~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 602 LRIFESK--RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-------------EYQVCAAAVGLVGDL 666 (859)
T ss_pred HHHHcCC--ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-------------HHHHHHHHHHHHHHH
Confidence 9999872 12222 4678889999999999999999999999988776432 445666789999999
Q ss_pred HHHhhhhhhhhcccchHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhc--CCCCCCC---
Q 002921 648 AEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQL--NTPKLKE--- 720 (865)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l--~~~~~~~--- 720 (865)
+..++.++.||-+. ++..|..+++++ ..+|+...+.++|+++...|.+|.||+..+++.+-..- +.+..+.
T Consensus 667 ~raL~~~i~py~d~--~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~ 744 (859)
T KOG1241|consen 667 ARALEDDILPYCDE--LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMV 744 (859)
T ss_pred HHHHHhhhhhHHHH--HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHH
Confidence 99999999999987 999999999864 56788889999999999999999999999998876543 1111100
Q ss_pred --chhHHHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccc
Q 002921 721 --TVSVANNACWAIGELAVKARQ-----EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSP 789 (865)
Q Consensus 721 --~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 789 (865)
-.++|+++..+...++...+. .+.||++.|++-+-.+-.++. ..+.+...+++.+|.|+...|..+.+
T Consensus 745 dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~-~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 745 DYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPD-VSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHcccchhh
Confidence 247899999999888877663 357999999998777766663 35677888999999999877755443
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.5e-28 Score=258.55 Aligned_cols=723 Identities=16% Similarity=0.177 Sum_probs=474.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
+.|-..|++|..-|.+.+.+.-..++.+.-..+...++++|.|.+..|.+.+..+++.++.+-+..+...+++.|...+-
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~ 95 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML 95 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc
Confidence 56778999999999999998877788888888889999999999999999999999988866555555555555554433
Q ss_pred cCChhH------------------------------------------------HhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 142 SNDINH------------------------------------------------MEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 142 ~~~~~~------------------------------------------------r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
++.... +..++.+++.+...++..+-
T Consensus 96 s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~------ 169 (1233)
T KOG1824|consen 96 SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP------ 169 (1233)
T ss_pred cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc------
Confidence 333333 33333334333333333221
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhc
Q 002921 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVR 252 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~ 252 (865)
+....++..++.-++++...||+.|+.+++.++...+...+..+ ++.+...+..+ ....-+..+++|..++...
T Consensus 170 --~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~l---i~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 170 --NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVEL---IEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred --chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 11233333344444556668999999999999988766654433 44555544433 3334445789999999999
Q ss_pred hhhhhhhHHHHHHHHhhhc---CCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhccc
Q 002921 253 PSFLEPHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (865)
Q Consensus 253 ~~~~~~~l~~l~~~l~~~~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (865)
+..+..|++.+++.+.+.. +..+++.|..+++++..+.+. +++.+-||.+.++..++.++++.+.....-++|++
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 9999999999999998877 667899999999999999887 78889999999999999999986543322211111
Q ss_pred C-CCCCccCCCCcccccccCCCCCCC--CCCCccccccccHHHHHHHHHHHHHhhhCc---chhhh--------------
Q 002921 330 E-SLPDRDQDLKPRFHSSRLHGSENP--EDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPT-------------- 389 (865)
Q Consensus 330 ~-~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~-------------- 389 (865)
. ...+.+ |++ ++.+||++-+|.+|++|+.++..+.....+ .+.+.
T Consensus 323 ~~~~ed~e---------------Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE 387 (1233)
T KOG1824|consen 323 AMFLEDEE---------------DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE 387 (1233)
T ss_pred hhhhhccc---------------cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh
Confidence 1 000100 111 222345567999999999999887654422 11112
Q ss_pred -----hHHHHHHhhcc----------CC------------------------------CcchhHHHHHHHHHHHHHhchh
Q 002921 390 -----LMPVIQAKLSA----------SG------------------------------DEAWKDREAAVLALGAIAEGCI 424 (865)
Q Consensus 390 -----~~~~l~~~l~~----------~~------------------------------~~~~~~r~~a~~~l~~l~~~~~ 424 (865)
++......+.. ++ .+..+.|.+++..|..+....+
T Consensus 388 nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 22222222211 00 0013455566666666766667
Q ss_pred hhhhccHHHHHHHHHhccCCCCh--HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002921 425 KGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSA 502 (865)
Q Consensus 425 ~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~a 502 (865)
..+.++++.++|.+...++|.+. ..+..++..+.......+ ++...+++..+.+.+..+..|+...+-..|...
T Consensus 468 ~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~----p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v 543 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP----PEVFHPHLSALSPPVVAAVGDPFYKISAEALLV 543 (1233)
T ss_pred chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC----hhhcccchhhhhhHHHHHhcCchHhhhHHHHHH
Confidence 77888999999999999998654 455555554443333222 234677888888999999999999998888888
Q ss_pred HHHHHHHhc-------cchhhhHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHh
Q 002921 503 FATLEEEAA-------EELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (865)
Q Consensus 503 l~~l~~~~~-------~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (865)
...+++... ....||+.+++...++.+... +.++++.++.+++.++..+|+... ..++.+++.+.+.+.
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~ 621 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLG 621 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHh
Confidence 888887652 456889999999888888654 457888999999999999997765 678899999999887
Q ss_pred cCCCCCcchhhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhh
Q 002921 574 QLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG 652 (865)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~ 652 (865)
+ +.....++.++..|+.+.-. ...|.+..+++.+...++... ..++.+.+.++..+++..+
T Consensus 622 n----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~--------------r~lr~~~l~a~~~L~~~~~ 683 (1233)
T KOG1824|consen 622 N----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ--------------RALRLATLTALDKLVKNYS 683 (1233)
T ss_pred c----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 4 33335677777777764433 566788888888888777653 2345566677777777766
Q ss_pred hhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHH----------------------------
Q 002921 653 SGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSD---------------------------- 704 (865)
Q Consensus 653 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---------------------------- 704 (865)
+.+..+.-+ .++.-+...+.+++-.+-+.|+.++..+....+..+....+.
T Consensus 684 ~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~a 762 (1233)
T KOG1824|consen 684 DSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQA 762 (1233)
T ss_pred ccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHH
Confidence 654443322 122222222222222333333333322222221111111111
Q ss_pred --------------------------------------------------------------------------------
Q 002921 705 -------------------------------------------------------------------------------- 704 (865)
Q Consensus 705 -------------------------------------------------------------------------------- 704 (865)
T Consensus 763 lV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Ls 842 (1233)
T KOG1824|consen 763 LVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLS 842 (1233)
T ss_pred HHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhh
Confidence
Q ss_pred ---------------HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH-hcc----------------------------
Q 002921 705 ---------------FLDIAAKQLNTPKLKETVSVANNACWAIGELAV-KAR---------------------------- 740 (865)
Q Consensus 705 ---------------~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~-~~~---------------------------- 740 (865)
+-..+.+.++++ +.+++.+|.+++|.+.. +.+
T Consensus 843 lGElgr~~~~s~~~e~~~~iieaf~sp----~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi 918 (1233)
T KOG1824|consen 843 LGELGRRKDLSPQNELKDTIIEAFNSP----SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVI 918 (1233)
T ss_pred hhhhccCCCCCcchhhHHHHHHHcCCC----hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHH
Confidence 111122222222 57899999999999874 111
Q ss_pred -----ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcc----------------------------
Q 002921 741 -----QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV---------------------------- 787 (865)
Q Consensus 741 -----~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---------------------------- 787 (865)
..+.|+++.|+..+.+-....+ ++.|.....|+|+|+...|+.+
T Consensus 919 ~~~svd~~~~~v~~IW~lL~k~cE~~e---egtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 919 VSASVDGLKPYVEKIWALLFKHCECAE---EGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred HHhccchhhhhHHHHHHHHHHhcccch---hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeec
Confidence 0124566666666666665554 5567778889999986555433
Q ss_pred ------cccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCC
Q 002921 788 ------SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHV 845 (865)
Q Consensus 788 ------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~ 845 (865)
.+++.+.+..|+..+.+ .|.+.|+.++.++.+.+..-|.-+...++.+++.+-+-++
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~d-pDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTk 1058 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRD-PDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETK 1058 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhh
Confidence 33445666677777666 5788999999999999998888788889999998876555
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.2e-23 Score=210.23 Aligned_cols=639 Identities=15% Similarity=0.160 Sum_probs=434.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhC-CChhHHHHHHHHHHHHHHhcCcC----ChHHHHHHH
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIA----GWLELLQAL 136 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~l 136 (865)
+..+..-+.|+.++...-+. .++...-..+-+.+.....+ .+..++.....+++.++....|+ ....++-.+
T Consensus 105 s~epr~~~~Aaql~aaIA~~---Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ai 181 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARM---ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAI 181 (858)
T ss_pred CCccHHHHHHHHHHHHHHHh---hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHH
Confidence 45555555666655433221 13333333344444444444 34556666667888888775442 223334444
Q ss_pred HHhhccC--ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHH
Q 002921 137 VTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (865)
Q Consensus 137 ~~~l~~~--~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~ 214 (865)
.....+. +..+|.+|+.+|..-+......+..+ ...+.+++.+...-+.++.+++.+|+.||..++..
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E------~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L---- 251 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE------EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML---- 251 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch------hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH----
Confidence 4444433 55899999999988666666655443 23478888999999999999999999999999865
Q ss_pred hHHhHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHHHHhhchh--h---------------hhhhHHHHHHHHhhhcC
Q 002921 215 LFVSMDQYLQGLF-----LLSNDPSAEVRKLVCAAFNLLIEVRPS--F---------------LEPHLRNLFEYMLQVNK 272 (865)
Q Consensus 215 ~~~~~~~~l~~l~-----~~~~~~~~~~r~~~~~~l~~l~~~~~~--~---------------~~~~l~~l~~~l~~~~~ 272 (865)
.+..++.+++..+ ....++++++...+.+.+..+++..-+ . ...-..+++|.++..+.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 3444444443322 234577889999999999887763211 1 11123456666665542
Q ss_pred ----C---CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccccc
Q 002921 273 ----D---TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (865)
Q Consensus 273 ----~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 345 (865)
| .+..+...|-.++.-+++.. ....++|.+.-+ . + .+
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~-gd~i~~pVl~Fv-E---q-------------------------ni------ 375 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLK-GDKIMRPVLGFV-E---Q-------------------------NI------ 375 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHh-hhHhHHHHHHHH-H---H-------------------------hc------
Confidence 2 22334555555555444431 112333322210 0 0 00
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc----chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002921 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (865)
Q Consensus 346 ~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (865)
..++|.-|.+|.-+++.+...-.+ ..++..+|.+...++++. ..++..+.+|+|.++.
T Consensus 376 ---------------~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~---l~vk~ttAwc~g~iad 437 (858)
T COG5215 376 ---------------RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC---LWVKSTTAWCFGAIAD 437 (858)
T ss_pred ---------------cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce---eehhhHHHHHHHHHHH
Confidence 113588899999999887765543 456777888888888777 7788999999999999
Q ss_pred chhhhhh--ccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhC--CCcchhhHHHHHHHHHHHH--cCCCHHH
Q 002921 422 GCIKGLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEKVLMGLLKRI--LDTNKRV 495 (865)
Q Consensus 422 ~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l--~d~~~~v 495 (865)
+..+.+. .|+.-.++..+.++.| +|++...++|....+..++.+..+ +....+++..++..|++.- .+++...
T Consensus 438 ~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~ 516 (858)
T COG5215 438 HVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNL 516 (858)
T ss_pred HHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhH
Confidence 9887765 5777788888888887 788889999999999999987532 2234566777888887653 3556788
Q ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc---------------chhhHHHHHHHHHHHHHHhcccCCchhh
Q 002921 496 QEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY---------------QRRNLRIVYDAIGTLADAVGFELNQPVY 560 (865)
Q Consensus 496 r~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (865)
|..+..+|+.++..+.+.+.+.+-.+.....+.+... ..+.+...+..+..++...+.+.. +.
T Consensus 517 R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie--~v 594 (858)
T COG5215 517 RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE--DV 594 (858)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cH
Confidence 9999999999999887776665555544444444321 113455678888889999998877 78
Q ss_pred HhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHh
Q 002921 561 LDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVC 639 (865)
Q Consensus 561 ~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 639 (865)
.+++|..++..++... ...+ ..+.-.++.+..++++.|..|++.++|.+.+-|+.. |.-+..+
T Consensus 595 ~D~lm~Lf~r~les~~--~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~--------------d~~v~~~ 658 (858)
T COG5215 595 EDQLMELFIRILESTK--PTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT--------------DRFVLNS 658 (858)
T ss_pred HHHHHHHHHHHHhccC--CchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch--------------hHHHHHH
Confidence 8999999999998641 1122 578888999999999999999999999998877532 5566778
Q ss_pred hhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCC
Q 002921 640 CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD--DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK 717 (865)
Q Consensus 640 al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (865)
+..+++.++..++.+|.+|-+. ++.-|..|+++ ...+++...+.++|+++...|..|.+|++.++-.+... ++-+
T Consensus 659 avglvgdlantl~~df~~y~d~--~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa-s~~~ 735 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADV--LMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA-SELD 735 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccC
Confidence 9999999999999999999976 99999999986 45678889999999999999999999999987665433 2211
Q ss_pred CC-C---chhHHHHHHHHHHHH----HHhc---cccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCc
Q 002921 718 LK-E---TVSVANNACWAIGEL----AVKA---RQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (865)
Q Consensus 718 ~~-~---~~~~~~~a~~~l~~l----~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (865)
.+ . -.+.+.++..++-.- .... ...+.||+.+++..+..+-.++.- .++....+++.+|.++-..|..
T Consensus 736 p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~-se~~traalGLigDla~mfpkg 814 (858)
T COG5215 736 PHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG-SEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc-chhHHHHHHHHHHHHHHhCCCc
Confidence 10 0 134555554443322 2222 234679999999998888888753 5666678899999999877653
Q ss_pred -cccc
Q 002921 787 -VSPH 790 (865)
Q Consensus 787 -~~~~ 790 (865)
++.+
T Consensus 815 elk~~ 819 (858)
T COG5215 815 ELKFG 819 (858)
T ss_pred chhhc
Confidence 4433
No 15
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=2e-22 Score=212.97 Aligned_cols=460 Identities=17% Similarity=0.224 Sum_probs=329.3
Q ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHHh-cCCC-cHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhC--------
Q 002921 17 ICRLLEQQ-ISPSSTADKSQIWQQLQQYS-QFPD-FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYK-------- 84 (865)
Q Consensus 17 ~~~~l~~~-~s~~~~~~r~~a~~~L~~~~-~~p~-~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~-------- 84 (865)
+..++-+. -+.+.+ +.+-|.+.+--+. +-++ -+..+.+-|+++ -+...+.|-.+++.||..+..--.
T Consensus 48 vv~~lLklL~D~ngE-VQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGE-VQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHHHHhccCcH-HHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 33333333 346777 9999998887543 3232 233333333322 134556677777777666533211
Q ss_pred ---------------------------------------cCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcC
Q 002921 85 ---------------------------------------SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (865)
Q Consensus 85 ---------------------------------------~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~ 125 (865)
.+-++....+...++.-+..+...||+.+..+++.++...+
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 11111223333344444456677899999999999999998
Q ss_pred cCChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh---cCCCHHHHHHHH
Q 002921 126 IAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSL 201 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~vr~~a~ 201 (865)
...+.+++..+...+..+ .+......+.+|+.++...+..+.. +.+.++|.+.+.. +..+.++|...+
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~--------h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS--------HLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc--------ccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 889999999999988765 5566778899999999999888754 4688999999888 556889999999
Q ss_pred HHHHHHhccccHHhHHhHHHHHHHHHHhhC-CC---------------------------------CHHHHHHHHHHHHH
Q 002921 202 GSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DP---------------------------------SAEVRKLVCAAFNL 247 (865)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~---------------------------------~~~~r~~~~~~l~~ 247 (865)
+++..|+...|.++.++.+.+++.+++.+. || ++.+|+++.+|+..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 999999999999999999998888877531 00 15699999999999
Q ss_pred HHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCch-------------------hhHHhhhhhHHH
Q 002921 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH-------------------ENLKEFLPRLVP 308 (865)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~-------------------~~~~~~~~~l~~ 308 (865)
++....+.+......+-|.++.-+++.++.|+...++++..+...-..+ ..+..-.+.++.
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk 438 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK 438 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH
Confidence 9999888888888888888888888888889998888877665441000 011111111111
Q ss_pred HHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---c
Q 002921 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E 385 (865)
Q Consensus 309 ~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~ 385 (865)
.+-+.+.. .....|..+...|..+....++ +
T Consensus 439 ai~~qlr~----------------------------------------------ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 439 AIQKQLRE----------------------------------------------KSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred HHHHHHhh----------------------------------------------ccccchhhHHHHHHHHHHhCcchhhh
Confidence 11111110 0123577788888888888865 4
Q ss_pred hhhhhHHHHHHhhccCCCcchhHHHHHHHHH-HHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLAL-GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 386 ~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l-~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
..+.++|.+...+++.+. ....+..++..+ +.++.+.++.+.++++.+.+.+..+..||.+.+...|+.+.+++++.+
T Consensus 473 ~~~slvpgI~~~l~DkSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred cccccchhhhhhcCCccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 567778888888876431 134455555554 456666678889999999999999999999999999999999999988
Q ss_pred hhhhC--CCcchhhHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Q 002921 465 VQDIG--HQNGREQFEKVLMGLLKRIL--DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 465 ~~~~~--~~~~~~~~~~~~~~l~~~l~--d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 532 (865)
.+.-. .-...+++.+++...++.+. |.+..||++|..+++.++...++.+...++.+++.+++.+++.
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 65311 12456788999999988886 5689999999999999999988888888888888888887653
No 16
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.95 E-value=6.6e-24 Score=224.94 Aligned_cols=753 Identities=15% Similarity=0.177 Sum_probs=428.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc-----CCHhHH
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~-----~~~~~~ 91 (865)
++..+....|+++. .+|.||+.|+++++++||...|..+..+ +..+..+|..|++.+||.|.++|.+ +.++++
T Consensus 6 vv~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~ 83 (947)
T COG5657 6 VVKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGNSILPDEN 83 (947)
T ss_pred HHHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccc
Confidence 44556777889999 9999999999999999999999999875 4789999999999999999999986 667777
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
..||..++.++-+.+....-+.|.+++.||+.++|..||.++|.|...+++.|...-.+.+.++..+++.+....+.+
T Consensus 84 v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd-- 161 (947)
T COG5657 84 VLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD-- 161 (947)
T ss_pred hHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--
Confidence 899999999998777777779999999999999999999999999999999888888889999999999888655443
Q ss_pred CCCCcchhhhHHHHHHHhcCC--CHH-----------HHHHHHHHHHHHhc----cccHHhHHhHHHHHHHHHHhhCCCC
Q 002921 172 GLAECPINIFLPRLLQFFQSP--HTS-----------LRKLSLGSVNQFIM----LMPSALFVSMDQYLQGLFLLSNDPS 234 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~--~~~-----------vr~~a~~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (865)
.+|....+.+.+.+.+.+... ... .-+.+++.+..+.. ..++.+.+.++.++......+.-..
T Consensus 162 ~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~ 241 (947)
T COG5657 162 ALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSN 241 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Confidence 222223344444444444321 111 11224444444432 2344455667777766666554222
Q ss_pred HH-------------HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCC-----CHHHHHHHHHHHHHhhccCC--
Q 002921 235 AE-------------VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEAQL-- 294 (865)
Q Consensus 235 ~~-------------~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-----~~~v~~~a~~~l~~l~~~~~-- 294 (865)
+. +....+..+..+...+|+.+.+++-+.++.++..+.+- .+-+...++.++..+.+.+.
T Consensus 242 ~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk 321 (947)
T COG5657 242 PVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRK 321 (947)
T ss_pred hhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHH
Confidence 22 22335666777777888888887777777776655431 24456677777776666421
Q ss_pred chhhH----HhhhhhHHHHHH-hhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 002921 295 PHENL----KEFLPRLVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (865)
Q Consensus 295 ~~~~~----~~~~~~l~~~ll-~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 369 (865)
..+.+ .....+++..++ ..+...++|.|.|+++|.+ |+|. .. . .+.+.++|.
T Consensus 322 ~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~e-------yire-----------~s---~--~dye~~vr~ 378 (947)
T COG5657 322 TAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLE-------YIRE-----------QS---K--TDYEVNVRP 378 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHH-------HHHh-----------hc---c--ccchhhhhH
Confidence 11111 224445555554 5666678888899887753 2220 00 0 112346899
Q ss_pred HHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCC-cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCC--
Q 002921 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD-EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF-- 446 (865)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~-- 446 (865)
++...++.....+|+-+.+.+...+.+....++. +......+++...| +....-..+-+........+.+.+.+|+
T Consensus 379 ~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g-~g~~av~~~~~~v~~~~~~~~pd~~s~~~~ 457 (947)
T COG5657 379 CIENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFG-LGVEAVNRMVDFVKFLGSIIYPDLLSPNEI 457 (947)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhcCccccCcccC
Confidence 9999999999999966667777777777665520 00233333333333 2222222222333333344445555543
Q ss_pred --hHHHHH-HHHHHHhhHH-HHhhhhCCCcchhhH-HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhccchhhhHH
Q 002921 447 --PLIRSI-SCWTLSRFSK-FIVQDIGHQNGREQF-EKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLE 519 (865)
Q Consensus 447 --~~vr~~-a~~~l~~l~~-~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~~~ 519 (865)
.++++. +...+..-.. ..... .....+ .+.+........|. --.+|.+....+..+.-. +....+-.+
T Consensus 458 ~~~ri~~~~i~~i~~~r~~l~~~~~----~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~le 532 (947)
T COG5657 458 IHLRILRSRIAYILTFRNQLDSSEL----SESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLE 532 (947)
T ss_pred ceeEEehhccchheechhhhhhhhh----hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHH
Confidence 333222 2222211111 11000 000000 11111122222221 133444444444333221 223444566
Q ss_pred HHHHHHHHHhcccch-hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc
Q 002921 520 IILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA 598 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 598 (865)
+++-.+.+.+..... ..+...+++++.+....++... |....+++.+.+.+.... .++........+-.-..+.+.
T Consensus 533 nl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~--pl~~~il~~L~~lv~~~~-knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 533 NLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIA--PLGSEILQLLDNLVEINA-KNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhh--hhHHHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHH
Confidence 676666666666544 4566889999999988887776 777788888877776543 233222222222122222223
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh-HhhhhhhhHHHHHhhh---hhhhh-cccchHHHHHHH-Hh
Q 002921 599 GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV-VCCLDLLSGLAEGLGS---GIESL-VAQSNLRDMLLQ-CC 672 (865)
Q Consensus 599 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~al~~l~~l~~~~~~---~~~~~-~~~~~l~~~l~~-~l 672 (865)
.+....+..+|.++..+... +..+. +.+.+.++.+...+.. +|..+ +|. +...+.. ++
T Consensus 610 ~~~~~~~~~ip~l~~~l~p~--------------~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~--v~~~l~q~~~ 673 (947)
T COG5657 610 LKSGMCEITIPTLVLALVPE--------------FPVLLSEDATELWSYVLQLLSILPEHFSGDVLPS--VVKILRQPSL 673 (947)
T ss_pred hhhcccccchHHHHHhhCcc--------------chhhhhhhHHHHHHHHHHHHhhcchhhcCCcCch--HHHHHhcccC
Confidence 34444555555554443322 01111 2344444444433322 22221 221 2222221 11
Q ss_pred cCCChhHHH---HHHHHHHHHHhhchhhhH-hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc--cccch
Q 002921 673 MDDASDVRQ---SAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ--EISPI 746 (865)
Q Consensus 673 ~~~~~~vr~---~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~ 746 (865)
..+-...+. ..+.++.......+.-+. ..+..++..+...+.. +.-+..+..++..+..... -..||
T Consensus 674 ~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~-------e~~~~~~f~~~~~v~~l~~~~i~~~~ 746 (947)
T COG5657 674 ATELLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGS-------EPHDALCFLNLTVVETLYLENIYEPY 746 (947)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhc-------chHHHHHHhhHHHHHHhHHHHHHhhc
Confidence 111112221 222222332222221111 2344556666665544 3556677777777765542 24578
Q ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhh------CCCcccc-------cHHHHHHHHHHHhccCCChHHHHH
Q 002921 747 VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV------CPELVSP-------HMEHFMQPWCIALSMIRDDTEKED 813 (865)
Q Consensus 747 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~-------~~~~~l~~~~~~l~~~~~~~~~~~ 813 (865)
+..+.-.++..+.+++ .++.....+..++++... +|+.+.. .+.+++..|+-......+.-+|+.
T Consensus 747 v~~i~~lll~rl~ns~--~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~~~~i~~~~drKi 824 (947)
T COG5657 747 VNLIFVLLLSRLKNSK--TERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILGFDEIHDSKDRKI 824 (947)
T ss_pred HHHHHHHHHHHhhccc--chHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceeeccchhccHHHHHH
Confidence 8888888888888876 466666666555555543 2332221 122344444444444667789999
Q ss_pred HHHHHHHHHhhCchhhH
Q 002921 814 AFRGLCAMVKANPSGAL 830 (865)
Q Consensus 814 ~~~~l~~l~~~~~~~~~ 830 (865)
..-++.++++...+.+.
T Consensus 825 ~~ig~snllrt~~~~vl 841 (947)
T COG5657 825 HLIGLSNLLRTLHPEVL 841 (947)
T ss_pred HHHhHHhhhhhcCchhh
Confidence 99999999976444333
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8.6e-22 Score=202.63 Aligned_cols=745 Identities=13% Similarity=0.135 Sum_probs=486.2
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CC-cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh---
Q 002921 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF--PD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT--- 81 (865)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~--p~-~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~--- 81 (865)
++++..-..+..+|....+.++. -|+.|-.+|..=..+ ++ .+.-++-++.+ .+.+++-|+.-..++-+.+-+
T Consensus 356 ~~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnqiLpllMs-~tLeDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 356 EDEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQILPLLMS-PTLEDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred CcccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHHHHHHHcC-ccccchhhhhHHHHHHHHHHhhcc
Confidence 34455556688888888888888 999999998863322 22 22334444443 377888899888777766632
Q ss_pred ---hhCc----------CCHhHHH-----HHHHHHh---------hhh----hCCChhHHHHHHHHHHHHHHhcCcCChH
Q 002921 82 ---AYKS----------MSPSNQQ-----YIKSELL---------PCL----GAADRHIRSTVGTIVSVVVQLGGIAGWL 130 (865)
Q Consensus 82 ---~w~~----------~~~~~~~-----~i~~~ll---------~~l----~~~~~~vr~~~a~~l~~i~~~~~~~~w~ 130 (865)
.|.. ++++... .|..+|. ..+ .+.++.||+..+.+.+.++... ..|
T Consensus 434 lvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gip 510 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GIP 510 (1172)
T ss_pred cchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---CcH
Confidence 1211 3333221 1223222 222 1357889999999999999876 569
Q ss_pred HHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 131 ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 131 ~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
.++|+|...+.|. +|..|+.++++..+++...+-..- +++..++..+-+++.|....||..+..++..+.+
T Consensus 511 ~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--------phl~~lv~ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 511 ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--------PHLKPLVKIIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--------hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Confidence 9999999999997 899999999999999987765432 3568888899999999999999999999999998
Q ss_pred cccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh-hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 002921 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (865)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~ 288 (865)
...+--...++.++..|...+...-.....+.+++++.++........ -|-..++-.+.+-...+|++.+...+.++..
T Consensus 583 aa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~q 662 (1172)
T KOG0213|consen 583 AATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQ 662 (1172)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 766666677888888887766543333444556666666654333333 3445777778888899999999999999999
Q ss_pred hhccCCc-hhhHH-hhhhhHHHHHH-hhccCChhhh-hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 002921 289 YFEAQLP-HENLK-EFLPRLVPVLL-SNMIYADDDE-SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (865)
Q Consensus 289 l~~~~~~-~~~~~-~~~~~l~~~ll-~~l~~~~~d~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (865)
+|..... .+.++ ..++.++...- ..+....... ...+....-.+..|..++-... + +++.||.+
T Consensus 663 cc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~----v---~~lkde~e----- 730 (1172)
T KOG0213|consen 663 CCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV----V---LDLKDEPE----- 730 (1172)
T ss_pred HhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH----h---hhhccccH-----
Confidence 8876221 12211 11111111110 1111100000 0000000000001100000000 0 11211111
Q ss_pred ccHHHHHHHHHHHHHhhhCc-----chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHH
Q 002921 365 WNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (865)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (865)
..|+....+++++....|. .....++.-+.-.++.++ -. -..-+..+|.++..+...+++|+++++..++
T Consensus 731 -~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~-d~vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 731 -QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TE-DSVMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred -HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cc-hhhhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 3699999999999888874 223344555555555443 11 1245677888888888888999999999999
Q ss_pred hccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-cchhhhH
Q 002921 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRL 518 (865)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~~~~~~~ 518 (865)
..|+++.+.||..|+.+++.++..++.. .....+..+=..|.+.+....+.|--....|+..++...+ ....|-+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 9999999999999999999999987653 2233444455566777888889998888888888887654 4566778
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhc
Q 002921 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALG 597 (865)
Q Consensus 519 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~ 597 (865)
..+++.|..+|++.+.+++...+..++.++....+.....+|+.... .|++.+... .+.+ .++.+++|.|++++|
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLkah---kK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKAH---KKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHH---HHHHHHHHHhhhhHHHHhcC
Confidence 89999999999999999999999999999987655433224555444 344555432 2334 578999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCCh
Q 002921 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDAS 677 (865)
Q Consensus 598 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 677 (865)
+. .++-.+++.|... +...+.+..-+++-+++.+|. | +++|.+..-...++.
T Consensus 958 Pq------dVLatLlnnLkvq--------------eRq~RvcTtvaIaIVaE~c~p----F----tVLPalmneYrtPe~ 1009 (1172)
T KOG0213|consen 958 PQ------DVLATLLNNLKVQ--------------ERQNRVCTTVAIAIVAETCGP----F----TVLPALMNEYRTPEA 1009 (1172)
T ss_pred HH------HHHHHHHhcchHH--------------HHHhchhhhhhhhhhhhhcCc----h----hhhHHHHhhccCchh
Confidence 84 3455555554432 333344444556666666654 2 488888887777888
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHH
Q 002921 678 DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVVLCLVP 756 (865)
Q Consensus 678 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~ 756 (865)
.|++-.+..++-+..+.|+.-..|+..+.|.+...+.+. +..-|+.|+..+..++....+- -..-+-.+++.+.+
T Consensus 1010 nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr----D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWp 1085 (1172)
T KOG0213|consen 1010 NVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR----DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWP 1085 (1172)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc----cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhh
Confidence 999999999999998888888899999999999999888 6788999999999988775432 12334455666666
Q ss_pred HhcCchhhhhhHHHHHHHHHHhhhh-hCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhH
Q 002921 757 ILKHSEELNKSLIENSAITLGRLAW-VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSL 833 (865)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 833 (865)
-+-++ .+.+.+....++-.+.. .+|+.+..|. .+.|-+. ....|+...+.+-++.-.+...+.+.+
T Consensus 1086 NIle~---sPhviqa~~e~~eg~r~~Lg~~~~~~Y~-------~QGLFHP-arkVR~~yw~vyn~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1086 NILET---SPHVIQAFDEAMEGLRVALGPQAMLKYC-------LQGLFHP-ARKVRKRYWTVYNSMYHGSQDALVACY 1152 (1172)
T ss_pred hhcCC---ChHHHHHHHHHHHHHHHHhchHHHHHHH-------HHhccCc-HHHHHHHHHHHHHhHhhcccchhhhcc
Confidence 55554 35566666666654443 2343333333 2333222 233555555555444443444344333
No 18
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.9e-22 Score=204.09 Aligned_cols=636 Identities=15% Similarity=0.207 Sum_probs=411.1
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 15 ~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
+.+.+++.+...| |.. .|++|.+++++++..|+.|..+.+++.. ++.++.+|..+...|...++..+.........
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~-~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLIN-ETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4567777777766 777 9999999999999999999999999974 46889999999999999999988889999999
Q ss_pred HHHHHHhhhhh-----CC----ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCCh-hHHhHHHHHHHHHHhhc
Q 002921 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDI 162 (865)
Q Consensus 93 ~i~~~ll~~l~-----~~----~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~-~~r~~al~~L~~l~~~~ 162 (865)
.+|..+...+. +. ++.++++++++++.+...+++..|+.++..+...+.-+.. .-..--+++|..+-.+.
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEi 160 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEI 160 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHh
Confidence 99998887653 22 6779999999999999999999999999998887754321 11222333443333322
Q ss_pred hhhc--------------ccCCCCCCCcchhhhHHHHHHHhc---CC-CHHHHHHHHHHHHHHhccccHHhHHhHHHHHH
Q 002921 163 PQVL--------------DSDVPGLAECPINIFLPRLLQFFQ---SP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (865)
Q Consensus 163 ~~~~--------------~~~~~~~~~~~~~~l~~~l~~~l~---~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~ 224 (865)
.+.. ++.+| ++.++++....++++. .. ++.+-..+++|+++++.++.-.+.. -+.+++
T Consensus 161 ad~dv~rT~eei~knnliKDaMR---~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~n 236 (980)
T KOG2021|consen 161 ADQDVIRTKEEILKNNLIKDAMR---DNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLN 236 (980)
T ss_pred hhccccCChHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHH
Confidence 2110 00001 2345666666555554 33 8889999999999999986533222 223455
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhchhh-------------------------------------------------
Q 002921 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF------------------------------------------------- 255 (865)
Q Consensus 225 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~------------------------------------------------- 255 (865)
.++..+. -+++|.+||.|+..++....+-
T Consensus 237 LLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~ 314 (980)
T KOG2021|consen 237 LLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIII 314 (980)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhH
Confidence 5555544 2556666666665544321100
Q ss_pred --------------hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc----CCchhhHHhhhhhHHHHHHhhccCC
Q 002921 256 --------------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYA 317 (865)
Q Consensus 256 --------------~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~~ll~~l~~~ 317 (865)
....+..+++.+++.+.+.++++-...+.||+..... +......+.++.+++......+++.
T Consensus 315 s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicyd 394 (980)
T KOG2021|consen 315 SQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYD 394 (980)
T ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhcc
Confidence 0112234566666777777777777777776664322 2222334456667777777777775
Q ss_pred hhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHh
Q 002921 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (865)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~ 397 (865)
+.. .|+++. .++|+|+ ..-.+|+.--.+++.++...|+.++..+-..+...
T Consensus 395 emy--~nddn~-------------------------tg~EeEa--~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~a 445 (980)
T KOG2021|consen 395 EMY--FNDDNV-------------------------TGDEEEA--FFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAA 445 (980)
T ss_pred HHh--hcccCC-------------------------CCchHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 432 111110 1111111 22257888888888888888877776676666666
Q ss_pred hccCCCcchhHHHHHHHHHHHHHhchhhhh----------hccHHHHHHHHHh--ccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 398 LSASGDEAWKDREAAVLALGAIAEGCIKGL----------YPHLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 398 l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
+.+....+|..-+.|+..+..++++.+... ...+..+++.+.. ...++|+.|.---...+-++.+.+.
T Consensus 446 l~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~ 525 (980)
T KOG2021|consen 446 LMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS 525 (980)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh
Confidence 655434459999999999999999876321 1223345554444 2467899999988888888888876
Q ss_pred hhhCCCcchhhHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc----------
Q 002921 466 QDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ---------- 533 (865)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~--~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~---------- 533 (865)
. ..++++-++.+++. ++.+.+..||.+|.+.+..+++.+++.+.||.+.+++.+..+|....
T Consensus 526 ~------esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~l 599 (980)
T KOG2021|consen 526 T------ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNL 599 (980)
T ss_pred c------chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcccccc
Confidence 3 45677777777764 56677899999999999999999999999999999999999983211
Q ss_pred --hhhHHHHHHHHHHHHHHh--cccCCchhhHhhhhHHHHH---------HHhcCCCCCcch-----hhHHHHHHHHHHH
Q 002921 534 --RRNLRIVYDAIGTLADAV--GFELNQPVYLDILMPPLIA---------KWQQLPNSDKDL-----FPLLECFTSIAQA 595 (865)
Q Consensus 534 --~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~l~~~l~~---------~l~~~~~~~~~~-----~~~~~~l~~l~~~ 595 (865)
.+.+...++++|.++..- +.+.. ..|++.++.+++. .+.+ +++... ...+-+++.+++.
T Consensus 600 t~fddqlyIfEtiGviI~l~n~paE~q-aay~~~litpl~~~~~igl~~a~las--de~~pv~Ia~c~~~lmaig~lakg 676 (980)
T KOG2021|consen 600 TIFDDQLYIFETIGVIITLNNSPAELQ-AAYANTLITPLILDQIIGLLFAQLAS--DEASPVVIAECHHILMAIGTLAKG 676 (980)
T ss_pred ccccccceeeecceEEEeCCCCCHHHH-HHHHhcccChHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHHhhc
Confidence 123445677777665321 11111 1355555543322 2221 122211 1223345555555
Q ss_pred hcccccc----c----hHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHH
Q 002921 596 LGAGFTQ----F----AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDM 667 (865)
Q Consensus 596 ~~~~~~~----~----~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~ 667 (865)
+..+..+ - ..++...++..|.... .-..+|.+.--.++.++..+|+...|++|+ +...
T Consensus 677 f~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~------------k~E~iRsavrft~hRmI~~lg~~vlPfipk--lie~ 742 (980)
T KOG2021|consen 677 FHIRLVTENQVGNMVVFSNILDVILVTLSFFN------------KFENIRSAVRFTFHRMIPILGNKVLPFIPK--LIEL 742 (980)
T ss_pred ccccCcchhcccHHHHHHHHHHHHHHHHhhcc------------ccchhHHHHHHHHHHHHHhcchhhhcchHH--HHHH
Confidence 4433211 1 1112222222222211 022566666678899999999999998876 5555
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhc
Q 002921 668 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQL 713 (865)
Q Consensus 668 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 713 (865)
+ +++.+......-+..+..++..+..++.+.+++++|.+...+
T Consensus 743 l---L~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 743 L---LSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred H---HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456666666778888999998888888888877766655543
No 19
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-16 Score=168.60 Aligned_cols=714 Identities=14% Similarity=0.138 Sum_probs=418.5
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHh
Q 002921 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (865)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~ 89 (865)
++..++.+..++..++++.+.+....++++|+.++..|+.|.+-.+++.. +...++|.++|+.|.-.|.++|+..+++
T Consensus 2 d~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~ 79 (982)
T KOG2022|consen 2 DSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPAN 79 (982)
T ss_pred CchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence 34467889999999998744438889999999999999999998999875 6678889999999999999999999999
Q ss_pred HHHHHHHHHhhhhh--CC-ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC-Ch--hHHhHHHHHHHHHHhhch
Q 002921 90 NQQYIKSELLPCLG--AA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DI--NHMEGAMDALSKICEDIP 163 (865)
Q Consensus 90 ~~~~i~~~ll~~l~--~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~-~~--~~r~~al~~L~~l~~~~~ 163 (865)
....++..++..+. ++ ...|-++.+-.++.++-+.-++.||.-+..+.+.+... +| ..-..+...|..+ ...+
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~L-s~~p 158 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVL-SFMP 158 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHh-ccCc
Confidence 99999999888663 33 55566667777777777767889999888888887653 22 1111122222222 1222
Q ss_pred hhccc-CC----CCC----CCcchhhhHHHHHHHhcCC---CH-----HHHHHHHHHHHHHhccccHH---hHHhHHHHH
Q 002921 164 QVLDS-DV----PGL----AECPINIFLPRLLQFFQSP---HT-----SLRKLSLGSVNQFIMLMPSA---LFVSMDQYL 223 (865)
Q Consensus 164 ~~~~~-~~----~~~----~~~~~~~l~~~l~~~l~~~---~~-----~vr~~a~~~l~~~~~~~~~~---~~~~~~~~l 223 (865)
..++. +. ++. +........+.+-..++.. .. -.+..|++|.+.++.++.-. .......++
T Consensus 159 ~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll 238 (982)
T KOG2022|consen 159 AEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLL 238 (982)
T ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 21110 00 000 0001122222222333322 22 46788999999998753210 000000001
Q ss_pred HHHH-------------------------------Hh--------------------------------hCCCC--HHHH
Q 002921 224 QGLF-------------------------------LL--------------------------------SNDPS--AEVR 238 (865)
Q Consensus 224 ~~l~-------------------------------~~--------------------------------~~~~~--~~~r 238 (865)
..+- .. ..+++ .+.-
T Consensus 239 ~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i 318 (982)
T KOG2022|consen 239 DVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEI 318 (982)
T ss_pred HHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 0000 00 00000 0111
Q ss_pred HHHHHHHHHHHhhchhhh---------hhhHHHHHHHHhhhcCCC-----CHHHHHHHHHHHHHhhcc---------C-C
Q 002921 239 KLVCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEA---------Q-L 294 (865)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~---------~~~l~~l~~~l~~~~~~~-----~~~v~~~a~~~l~~l~~~---------~-~ 294 (865)
...+.+....+++.-..+ ..++..++..++.+.+-+ ++.+...++.||.++.+. + .
T Consensus 319 ~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~ 398 (982)
T KOG2022|consen 319 VTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIK 398 (982)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 111111111111111100 011122233333322211 344566778899888654 1 1
Q ss_pred chhhHHhhhhhHHHHHHhhccCChhhh-hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHH
Q 002921 295 PHENLKEFLPRLVPVLLSNMIYADDDE-SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (865)
Q Consensus 295 ~~~~~~~~~~~l~~~ll~~l~~~~~d~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~ 373 (865)
.+...++.+.+++..++..+....++. ..|..+. .+..-..|+.-.+
T Consensus 399 ~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s--------------------------------~e~F~~YR~diSD 446 (982)
T KOG2022|consen 399 KQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS--------------------------------REQFESYRKDISD 446 (982)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch--------------------------------HHHHHHHHHHHHH
Confidence 123334788888888888877765432 2232211 0111247888889
Q ss_pred HHHHHHhhhCcchhhhhHHHHHHhhccCC--CcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHh-ccCCCChHHH
Q 002921 374 ALDVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIR 450 (865)
Q Consensus 374 ~l~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr 450 (865)
++...-..+|+..+..+...+.+.+.+++ ++.|..-++++..+..+++..+....+.++..+..... .+.-+++..-
T Consensus 447 ~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~ 526 (982)
T KOG2022|consen 447 LLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL 526 (982)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH
Confidence 99888888899888888888888887543 44599999999999999999887766776666664433 2445688889
Q ss_pred HHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Q 002921 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (865)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 530 (865)
..+..++|.++.|+.+ .+.++...++.+++.+..+.. -..+...+..+|+.|+..+.||.++++...-..+.
T Consensus 527 ~Tss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 527 STSSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred HHHHHHHHHHHHHHhc------CCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 9999999999999974 577888999999999986443 34556679999999999999999999998888876
Q ss_pred ccc--hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC---CCCCcc--h--hhHHHHHHHHHHHhcc---
Q 002921 531 KYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL---PNSDKD--L--FPLLECFTSIAQALGA--- 598 (865)
Q Consensus 531 ~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~--~--~~~~~~l~~l~~~~~~--- 598 (865)
... ...+..++.++|.+.....++.. |+|+..+++.++..++.. +-+++. + .-.+.+++.+..++-.
T Consensus 599 ~~~~~~S~~~klm~sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~ 677 (982)
T KOG2022|consen 599 KSNAKDSDRLKLMKSIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKD 677 (982)
T ss_pred ccccCchHHHHHHHHHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 543 23455788999999887765433 489999998888887653 111111 1 1234566666654421
Q ss_pred ---------c---cccc-hHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh-hhhcccchH
Q 002921 599 ---------G---FTQF-AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-ESLVAQSNL 664 (865)
Q Consensus 599 ---------~---~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~~~l 664 (865)
. |..+ .-+++..++..+......- .+ +.++++.+......=+...++.| .|++++ +
T Consensus 678 ~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~-------~~-~s~vve~~C~i~~~~v~~~~~sF~~p~l~~--l 747 (982)
T KOG2022|consen 678 IIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW-------LG-LSDVVEASCIIMVKGVRSLLTSFPEPMLPS--L 747 (982)
T ss_pred cccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH-------hc-chhHHHHHHHHHHhccccccccchhhhHHH--H
Confidence 1 1111 1223333333333221100 00 23444433332222244445556 677766 8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHh---hchhhhHhh----HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 665 RDMLLQCCMDDASDVRQSAFALLGDLAR---VCPVHLQAR----LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 665 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~---~~~~~~~~~----~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.+++.+...... ++...++.-+. .......|. +...+...+....+....++++.-..-+.++..+..
T Consensus 748 ~~Fi~r~~~~~~-----a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilk 822 (982)
T KOG2022|consen 748 CPFIVRFLTSCL-----AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILK 822 (982)
T ss_pred HHHHHHhccchH-----HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHH
Confidence 888887443211 11111111111 111111222 222222222223322111145666667777778877
Q ss_pred hccccccc---hHHH-HHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCC
Q 002921 738 KARQEISP---IVMT-VVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE 785 (865)
Q Consensus 738 ~~~~~~~~---~~~~-il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (865)
..++-+.+ .+.+ ++...+..+..++ +....+++.++..++.+...
T Consensus 823 k~P~~~~~~~~~~ts~i~~~a~~ll~~pE---~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 823 KIPKFLEPSMLAFTSLILICAFILLNSPE---PTTIRAASQFLTALATYATS 871 (982)
T ss_pred hCcCccccchHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHHhhccc
Confidence 77644333 3333 4446777777775 45566777787777765443
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.90 E-value=4.3e-19 Score=179.44 Aligned_cols=690 Identities=15% Similarity=0.127 Sum_probs=448.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CC-cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh------hhCc
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQF--PD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT------AYKS 85 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~--p~-~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~------~w~~ 85 (865)
..+..+|....+.++. -|+.+-..|..=..+ |. .+.-++-++.+ -+.+++-|+.-..++-+.+-+ .|..
T Consensus 168 r~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~-r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 168 RDVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMS-RELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred HhHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 3467778888888888 999998888764332 32 23344444443 267888899888777776632 1211
Q ss_pred ----------CCHhHH-----HHHHHHHhh--hh-----------hCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHH
Q 002921 86 ----------MSPSNQ-----QYIKSELLP--CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (865)
Q Consensus 86 ----------~~~~~~-----~~i~~~ll~--~l-----------~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~ 137 (865)
++++.+ ..|..+|.. +| .+.++.||+..+.+.+.++... ..++++|+|.
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl~ 322 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFLE 322 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHHH
Confidence 233221 122222221 12 2357889999999999999876 4589999999
Q ss_pred HhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhH
Q 002921 138 TCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (865)
Q Consensus 138 ~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~ 216 (865)
..+.|. ++..|+.++++..+++...+...- .++..++..+-+++.|.+..||..+..++..+.+...+--.
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l--------~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi 394 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRL--------SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI 394 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHH--------hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch
Confidence 999987 899999999999999998775432 34678888899999999999999999999999887655556
Q ss_pred HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh-chhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccC-C
Q 002921 217 VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-L 294 (865)
Q Consensus 217 ~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~-~ 294 (865)
..++.++..+....+..........+++.+.++.. .|+....+-...+..+...+++++++.+...+-+...+.... .
T Consensus 395 e~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 395 EQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 67777777777655433233333445555554442 345555566778888888888888887776666665554441 1
Q ss_pred chhhHHhhhhhHHHHHHhh-----ccCChhhhhhh-hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002921 295 PHENLKEFLPRLVPVLLSN-----MIYADDDESLV-EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (865)
Q Consensus 295 ~~~~~~~~~~~l~~~ll~~-----l~~~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r 368 (865)
... -+.+++.|.+++. +.....-.... .....-+...|+.++-.... +.+.|+.| -.|
T Consensus 475 tp~---~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil-------~~~~De~e------p~r 538 (975)
T COG5181 475 TPW---KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKIL-------EYYSDEPE------PYR 538 (975)
T ss_pred CHH---HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHH-------hhccCCcc------hhh
Confidence 111 1222333332210 11000000000 00000000000000000000 11111111 268
Q ss_pred HHHHHHHHHHHhhhCc-----chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC
Q 002921 369 KCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (865)
Q Consensus 369 ~~a~~~l~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (865)
+.++.+.+++....|. ....-+...+...++.++ - .-...+-+++.+.....-..++|++.+++.++..|+
T Consensus 539 ~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~---~-t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 539 KMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD---T-TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred hhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc---c-cccEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 8888888888887763 222334444444444333 0 111122344444433334457999999999999999
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-cchhhhHHHHH
Q 002921 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIIL 522 (865)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~i~ 522 (865)
++.|.+|..|+.+.+.++..++.. .....+..+=..|.+.+....+.|--....|+..+....+ ..+.|-+..|+
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c----~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~il 690 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKAC----GETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGIL 690 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhc----chHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcc
Confidence 999999999999999999887743 1233455555667778887788888888888877776553 55778889999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccc
Q 002921 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFT 601 (865)
Q Consensus 523 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~ 601 (865)
+.+..+|.+.+.++....+..++.++...++.....+|+.... .+++.+... .+++ .++.+++|.|++++|+.
T Consensus 691 P~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~---nKeiRR~A~~tfG~Is~aiGPq-- 764 (975)
T COG5181 691 PSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSW---NKEIRRNATETFGCISRAIGPQ-- 764 (975)
T ss_pred ccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHh---hHHHHHhhhhhhhhHHhhcCHH--
Confidence 9999999998888888888999999887665433224555444 355555543 2344 57889999999999984
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHH
Q 002921 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQ 681 (865)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 681 (865)
.++..+++.|... +...+.+..-+++-+++.+|.- +++|.+..-...++..|++
T Consensus 765 ----dvL~~LlnnLkvq--------------eRq~RvctsvaI~iVae~cgpf--------sVlP~lm~dY~TPe~nVQn 818 (975)
T COG5181 765 ----DVLDILLNNLKVQ--------------ERQQRVCTSVAISIVAEYCGPF--------SVLPTLMSDYETPEANVQN 818 (975)
T ss_pred ----HHHHHHHhcchHH--------------HHHhhhhhhhhhhhhHhhcCch--------hhHHHHHhcccCchhHHHH
Confidence 4555555555432 3344555556677777777752 4888888877788889999
Q ss_pred HHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHhcC
Q 002921 682 SAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-SPIVMTVVLCLVPILKH 760 (865)
Q Consensus 682 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~il~~l~~~l~~ 760 (865)
-.+.++.-+..+.|+.-..|+..+.|.+...+.+. +..-|+.|...+..++.++++.. ..-.-.+++.+.+-+-+
T Consensus 819 GvLkam~fmFeyig~~s~dYvy~itPlleDAltDr----D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle 894 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR----DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILE 894 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc----chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccC
Confidence 99999999999999888999999999999999888 67889999999999998875332 23344456666666655
Q ss_pred chhhhhhHHHHHHHHHHhhh
Q 002921 761 SEELNKSLIENSAITLGRLA 780 (865)
Q Consensus 761 ~~~~~~~~~~~~~~~l~~l~ 780 (865)
+. +.+....-..+..+.
T Consensus 895 ~s---Phvi~~~~Eg~e~~~ 911 (975)
T COG5181 895 PS---PHVIQSFDEGMESFA 911 (975)
T ss_pred CC---cHHHHHHHHHHHHHH
Confidence 53 455555555554444
No 21
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.8e-17 Score=175.83 Aligned_cols=665 Identities=12% Similarity=0.104 Sum_probs=406.9
Q ss_pred CCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCC--hhHHhHHHHHH-HHHHhhchhhcccCC-CCCCCcchh
Q 002921 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND--INHMEGAMDAL-SKICEDIPQVLDSDV-PGLAECPIN 179 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~--~~~r~~al~~L-~~l~~~~~~~~~~~~-~~~~~~~~~ 179 (865)
++++..|+.+-+-+..+-+ -|.+++.+.+.+.+++ ..+|.+|..-+ +.+.+.++..-..-. .++.+..-.
T Consensus 15 d~d~~~R~~AE~~L~q~~K------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~ 88 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEK------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKA 88 (1010)
T ss_pred CCChHHHHHHHHHHHHhhc------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHH
Confidence 5668999988776665443 3788899999887763 36677776666 555555544310000 012233334
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch------
Q 002921 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP------ 253 (865)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~------ 253 (865)
.+-..++..+...+.-+|..-..|+..++..- +....+.+++.+-..+++++...--.++-|+..+++.+.
T Consensus 89 ~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 89 VIRENILETIVQVPELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 45556666666666677777777888887653 224455666666677777776666778888888887543
Q ss_pred -----hhhhhhHHHHHHHHhhhcCCCCHH---HHHHHHHHHHHhhccCCchhhHH-hhhhhHHHHHHhhccCChhhhhhh
Q 002921 254 -----SFLEPHLRNLFEYMLQVNKDTDDD---VALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 254 -----~~~~~~l~~l~~~l~~~~~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~d~~~~ 324 (865)
..+..+++.+.+...+.+...+.+ .....+..+.+++-......... ..+...+..++..+...-+. |..
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~-E~l 244 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPV-EVL 244 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh-hcc
Confidence 122334444554444555554433 33445554444444321111111 11222233333322221110 000
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcch------------------
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI------------------ 386 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~------------------ 386 (865)
..|.++-...+.|+.+++|...+.++.+.+|+..
T Consensus 245 ----------------------------~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~ 296 (1010)
T KOG1991|consen 245 ----------------------------SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFA 296 (1010)
T ss_pred ----------------------------cCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH
Confidence 0111222234678999999999999999997421
Q ss_pred ---hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-----hhhhccH---------------------------
Q 002921 387 ---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-----KGLYPHL--------------------------- 431 (865)
Q Consensus 387 ---~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~l--------------------------- 431 (865)
+..++..+.+.-+ +. |..-+.-..++.-+..... +.+.||+
T Consensus 297 ~~ile~~lk~l~~~~~-~~---yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~ 372 (1010)
T KOG1991|consen 297 QGILEVFLKILEQWRQ-QL---YLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY 372 (1010)
T ss_pred HHHHHHHHHHHHHHHh-cc---cCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH
Confidence 1111222222111 11 2111111111111111000 1222333
Q ss_pred ------------------------------------HHHHHHHHhccC--------CCChHHHHHHHHHHHhhHHHHhhh
Q 002921 432 ------------------------------------SEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 432 ------------------------------------~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
+.+++++..-++ ..+++-+..|+.++|.++..+.+.
T Consensus 373 EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~ 452 (1010)
T KOG1991|consen 373 EYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK 452 (1010)
T ss_pred HHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC
Confidence 333333333222 234566677888888888776531
Q ss_pred hCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HhccchhhhHHHHHHHHHHHhc-ccchhhHHHHHHHHH
Q 002921 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE-EAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (865)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~-~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~~~~l~ 545 (865)
.......-..+++.+++.++++....|.+||+.++.+++ ..++ ...+.++++...+++. +.+.+++-.+.-|+.
T Consensus 453 --s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 453 --SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred --CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 111233445677888889999999999999999999984 2222 2346667777777777 556678878888888
Q ss_pred HHHHHhccc---CCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHh
Q 002921 546 TLADAVGFE---LNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (865)
Q Consensus 546 ~l~~~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 622 (865)
.++...... +. ++++.+|..++...+..+ ...+..++..++..+++++.||..++++.+.+..-......
T Consensus 529 ~fI~~~~~~~e~~~--~hvp~~mq~lL~L~ne~E-----nd~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~ 601 (1010)
T KOG1991|consen 529 SFISNQEQADEKVS--AHVPPIMQELLKLSNEVE-----NDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTS 601 (1010)
T ss_pred HHHhcchhhhhhHh--hhhhHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhcc
Confidence 888765533 22 344455544554444322 23567788899999999999999998888766554443321
Q ss_pred hcccccCCCCCcch-hHhhhhhhhHHHHHhhhhhhh--hcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH
Q 002921 623 VDSVAAGAQYDKEF-VVCCLDLLSGLAEGLGSGIES--LVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ 699 (865)
Q Consensus 623 ~~~~~~~~~~~~~~-~~~al~~l~~l~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~ 699 (865)
.+....++|..+ ..+++.++++++.++.+...- .+. +.++|.+...+++.-.++-+.++.+...+.- ....+.
T Consensus 602 --~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le-~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~~~Is 677 (1010)
T KOG1991|consen 602 --EDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE-PIVLPVIGFILKNDITDFYEELLEIVSSLTF-LSKEIS 677 (1010)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-hhcccC
Confidence 111111223333 347888889998887765322 222 3588888888888888888888775555543 346788
Q ss_pred hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 002921 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS---PIVMTVVLCLVPILKHSEELNKSLIENSAITL 776 (865)
Q Consensus 700 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (865)
|-++.+++.+.+.+++. ..+.-...+-++.+++..+++.+. .|...++..+..++.+.. ...+-+..++..+
T Consensus 678 p~mW~ll~li~e~~~~~----~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~-~~D~d~~~a~kLl 752 (1010)
T KOG1991|consen 678 PIMWGLLELILEVFQDD----GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSEN-GEDSDCESACKLL 752 (1010)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCC-CchHHHHHHHHHH
Confidence 99999999999999987 667778888889888887766553 356777777777776642 2344566788888
Q ss_pred HhhhhhCCCcccccHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhCchhhH
Q 002921 777 GRLAWVCPELVSPHMEHFMQPWCIALSM-IRDDTEKEDAFRGLCAMVKANPSGAL 830 (865)
Q Consensus 777 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~~l~~~~~~~~~ 830 (865)
.-++..+.+.+.++++.++...++.+.. .++.+.|..++....+.+..||.-.+
T Consensus 753 e~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL 807 (1010)
T KOG1991|consen 753 EVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTL 807 (1010)
T ss_pred HHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHH
Confidence 8888888888888999999999999887 56778899999999999999996444
No 22
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.89 E-value=1.1e-16 Score=162.65 Aligned_cols=785 Identities=13% Similarity=0.171 Sum_probs=438.0
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
.++-+.++....+.++.. .+++|++.|.+++..|+.|...-.||.. +..|+.+..|..+|.+.|..+|+-++.+.|.
T Consensus 12 diallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~ 88 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQ 88 (1053)
T ss_pred CHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHH
Confidence 345667777888889998 9999999999999999999999999974 8889999999999999999999999999999
Q ss_pred HHHHHHhhhhh--CCChh-------HHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 93 YIKSELLPCLG--AADRH-------IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 93 ~i~~~ll~~l~--~~~~~-------vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
.||.-+.+.+- +.+.. +-+.+-..+..|++.++|..||+++|.+.+.-+ .+..+.+..+.+|..+.++.-
T Consensus 89 GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvF 167 (1053)
T COG5101 89 GIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVF 167 (1053)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHH
Confidence 99999998764 33444 445566677888999999999999999998766 466777788888877766542
Q ss_pred h----h--------cccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh
Q 002921 164 Q----V--------LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS 230 (865)
Q Consensus 164 ~----~--------~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 230 (865)
. + +++.+ ..-+++++..+.+.|.. .++.+-.+.+..+..+.+++|-.+.- ..++++.+..-.
T Consensus 168 dfSaeqmTq~k~~~LkNqm----~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIf-eTnIieLv~~~f 242 (1053)
T COG5101 168 DFSAEQMTQVKKRLLKNQM----KIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIF-ETNIIELVLEHF 242 (1053)
T ss_pred hccHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHH-HHHHHHHHHHHh
Confidence 1 1 11111 12346777777777754 47788899999999999998743221 112233222222
Q ss_pred CCCCHHHHHHHHHHHHHHHhhch--h-------hh---------------------------------hhhHHHHHHH--
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRP--S-------FL---------------------------------EPHLRNLFEY-- 266 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~--~-------~~---------------------------------~~~l~~l~~~-- 266 (865)
. ..++.|...++||..++.... . .+ +.++..+..+
T Consensus 243 ~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~ 321 (1053)
T COG5101 243 N-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLS 321 (1053)
T ss_pred c-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHH
Confidence 1 123444555555555443210 0 00 0011111111
Q ss_pred -------------------------HhhhcCCCCHHHHHHHHHHHHHhhcc--------CC--c----------------
Q 002921 267 -------------------------MLQVNKDTDDDVALEACEFWHSYFEA--------QL--P---------------- 295 (865)
Q Consensus 267 -------------------------l~~~~~~~~~~v~~~a~~~l~~l~~~--------~~--~---------------- 295 (865)
+++...-++.++-..+++.|..++.. +. +
T Consensus 322 s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istn 401 (1053)
T COG5101 322 SLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTN 401 (1053)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCC
Confidence 11111112344555666666654322 00 0
Q ss_pred hh----------hHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc
Q 002921 296 HE----------NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (865)
Q Consensus 296 ~~----------~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~ 365 (865)
.+ .....+.++.-.++..|..+++-. -.+++. .+.+|.+. .|.|. -
T Consensus 402 pn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVl-iVende-------gEivRefv-------------ketDt---I 457 (1053)
T COG5101 402 PNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVL-IVENDE-------GEIVREFV-------------KETDT---I 457 (1053)
T ss_pred cchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEE-EEECCC-------cHHHHHHh-------------ccccH---h
Confidence 00 000011111122222222211100 000000 00111000 01111 1
Q ss_pred cHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh-ccHHHHHHHHHh----
Q 002921 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP---- 440 (865)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~---- 440 (865)
..-+.-..+|-.++...-...-...+..+-..+... .+.|..-..-++++|+++....+... .++-.++..++.
T Consensus 458 ~lYksmRevLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~Lcem 536 (1053)
T COG5101 458 ELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEM 536 (1053)
T ss_pred HHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 123334444444444333333333444444444333 34478888889999999988876543 455555555443
Q ss_pred -ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccc------
Q 002921 441 -LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE------ 513 (865)
Q Consensus 441 -~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~------ 513 (865)
.-+|....|.......+|++-+++.. ...++..++..+++.++..+..|+..||..+-.+++.|+.+
T Consensus 537 KrgKdnKAVvASnIMyvvGQYpRFLka------hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~ 610 (1053)
T COG5101 537 KRGKDNKAVVASNIMYVVGQYPRFLKA------HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQE 610 (1053)
T ss_pred hhcCCcchhhecceeeeeccchHHHHH------HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCC
Confidence 34566667777778889999998873 57889999999999999889999999999999999988533
Q ss_pred --hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC---CCCC------cch
Q 002921 514 --LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL---PNSD------KDL 582 (865)
Q Consensus 514 --~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~------~~~ 582 (865)
-.|++..|+..+-+.-.+-........+++.+.++...+..-.....+-.+|......|.+. .++. +..
T Consensus 611 gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~t 690 (1053)
T COG5101 611 GESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMT 690 (1053)
T ss_pred CCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhH
Confidence 36788888887776665555555667888888887765543211122233333333333321 1111 111
Q ss_pred ----hhHHHHHHHHHHHhccccccchHHHHHHHHH-----H--HHHHHHH-----hhcc---------------------
Q 002921 583 ----FPLLECFTSIAQALGAGFTQFAQPVFQRCIN-----I--IQTQQLA-----KVDS--------------------- 625 (865)
Q Consensus 583 ----~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~-----~--l~~~~~~-----~~~~--------------------- 625 (865)
.+.+.+=-..+.++|..|-|.....+-..+. . +...... +..+
T Consensus 691 vki~an~~ktnVa~ctslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIs 770 (1053)
T COG5101 691 VKIDANKMKTNVAKCTSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYIS 770 (1053)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHh
Confidence 1111221222345565665532221111110 0 0000000 0000
Q ss_pred ---ccc--------------CCCC---CcchhH-hhhhhhhHHHHHhhhhhhhhcccchHHHHHHHH-----hc--CCCh
Q 002921 626 ---VAA--------------GAQY---DKEFVV-CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC-----CM--DDAS 677 (865)
Q Consensus 626 ---~~~--------------~~~~---~~~~~~-~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-----l~--~~~~ 677 (865)
|.. ..+| -++.+. .++.+.+++++..++-...-.+ .++.-++.| .+ ++.+
T Consensus 771 ka~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~--l~l~svf~ctl~mi~kdf~Eyp 848 (1053)
T COG5101 771 KARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRE--LFLISVFICTLIMIVKDFDEYP 848 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHhhhHHHHHhhhhhCh
Confidence 000 0000 011111 3556666666665542211111 122222222 11 4678
Q ss_pred hHHHHHHHHHHHHHhhchhhhH----hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc---c-----ccc
Q 002921 678 DVRQSAFALLGDLARVCPVHLQ----ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ---E-----ISP 745 (865)
Q Consensus 678 ~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~-----~~~ 745 (865)
+.|.+-+.++..+-..+-..|. |....+...+.-.+... +.++.+....++-.+..++.. . ...
T Consensus 849 Ehr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi----~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~ 924 (1053)
T COG5101 849 EHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHI----NRDVSDLGLNILLILFKNCHEMGVPFINQFYAQ 924 (1053)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhc----cchHhhhhhHHHHHHHHHHHHhCCchHHHHHHH
Confidence 8888888888877776554443 44455666666666655 567888888888877766532 1 134
Q ss_pred hHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh---hCCCccc---------ccHH-HHHHHHHHHhccCCChHHHH
Q 002921 746 IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW---VCPELVS---------PHME-HFMQPWCIALSMIRDDTEKE 812 (865)
Q Consensus 746 ~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~---------~~~~-~~l~~~~~~l~~~~~~~~~~ 812 (865)
|....++.++-++.+++ .+.+.. ..+..+++|.. .+.-.++ -+++ .+...+.++.|+... +.-+
T Consensus 925 yy~s~l~~il~vltDsD-hKsgF~-~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp~it~-e~v~ 1001 (1053)
T COG5101 925 YYMSTLENILGVLTDSD-HKSGFD-QQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFPNITQ-ESVK 1001 (1053)
T ss_pred HHHHHHHHHHeeeeccc-hhccch-HHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcCcccH-HHHH
Confidence 55666777777777774 233333 33344444443 2111111 1233 345556667776542 3333
Q ss_pred HHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc
Q 002921 813 DAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT 848 (865)
Q Consensus 813 ~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 848 (865)
.-..+|..+.+ +..-...++..|..-+-++-.+|+
T Consensus 1002 ~f~~~l~~~~~-d~~ifk~~~~df~vkv~e~g~d~~ 1036 (1053)
T COG5101 1002 IFSVGLFELCG-DDEIFKEHVEDFRVKVYEFGTDED 1036 (1053)
T ss_pred HHHHHHHHHhC-cHHHHHHHHHHHhhheeeeCCCcc
Confidence 34455555544 334456888888888888888875
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=1.9e-18 Score=205.01 Aligned_cols=719 Identities=15% Similarity=0.109 Sum_probs=436.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcC---------CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhh-----hCcCCHhHH
Q 002921 26 SPSSTADKSQIWQQLQQYSQF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-----YKSMSPSNQ 91 (865)
Q Consensus 26 s~~~~~~r~~a~~~L~~~~~~---------p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~-----w~~~~~~~~ 91 (865)
+++.. +|..|-..|.++..+ ++.++.|+++|. +.+++.|..|+..|.+.-... |..+- ..
T Consensus 69 sg~~~-vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~--v~ 142 (2102)
T PLN03200 69 SGTLG-AKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIF--ST 142 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhh--hh
Confidence 55666 787877777776542 577888999996 347899999999987765421 21111 12
Q ss_pred HHHHHHHhhhhhCC---ChhHHHHHHHHHHHHHHhcCcCChHH-----HHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 92 QYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 92 ~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~~~w~~-----ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
....+.|+..+.++ +..++..++.++.+++... .+.|.. .+|.+.+.++++++..+..|..+|..++...+
T Consensus 143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e 221 (2102)
T PLN03200 143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFE 221 (2102)
T ss_pred cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 34456778888765 3346777778888888754 556654 57899999999999999999998888876654
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCC------
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPS------ 234 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~------ 234 (865)
+... .+ .-...+|.+++++.+ .++.+|..|..+|.+++...++. ...+ ...++.++..+..++
T Consensus 222 e~~~-aV------IeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~-r~~Iv~aGgIp~LI~lL~sp~~e~~~~ 293 (2102)
T PLN03200 222 SSIS-KV------LDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA-KQAIADAGGIPALINATVAPSKEFMQG 293 (2102)
T ss_pred HHHH-HH------HHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCcchhhhcc
Confidence 3211 00 114568999999976 56799999999999998754321 1111 122445555444332
Q ss_pred ---HHHHHHHHHHHHHHHhhchhhhhhhHHHH----------------HHHHhhhcCCCCHHHHH----HHHHHHHHhhc
Q 002921 235 ---AEVRKLVCAAFNLLIEVRPSFLEPHLRNL----------------FEYMLQVNKDTDDDVAL----EACEFWHSYFE 291 (865)
Q Consensus 235 ---~~~r~~~~~~l~~l~~~~~~~~~~~l~~l----------------~~~l~~~~~~~~~~v~~----~a~~~l~~l~~ 291 (865)
...++.+..+|..++...+.. -+++..+ +..++...++.++..+. .+...+..+++
T Consensus 294 ~~~~~Lqe~AvwALsNIcgg~~~l-l~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 294 EFAQALQENAMGALANICGGMSAL-ILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred ccchHHHHHHHHHHHHHhCCchhh-HHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 345788888998888754331 1222211 11222223333322221 22344555655
Q ss_pred cCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
.+... +....+.+.+...+....- -..+.+. +-+++...-... .+ -..+..+
T Consensus 373 ~k~p~----~vqe~V~eALasl~gN~~l-~~~L~~~---------daik~LV~LL~~--------~~------~evQ~~A 424 (2102)
T PLN03200 373 PRDTK----LVQERIIEALASLYGNAYL-SRKLNHA---------EAKKVLVGLITM--------AT------ADVQEEL 424 (2102)
T ss_pred CCCCc----hhHHHHHHHHHHhcCChHH-HHHHHhc---------cchhhhhhhhcc--------CC------HHHHHHH
Confidence 42111 0112222222110110000 0000000 000110000000 00 0267788
Q ss_pred HHHHHHHHhhhCcc---h-hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCC
Q 002921 372 AAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKF 446 (865)
Q Consensus 372 ~~~l~~l~~~~~~~---~-~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~ 446 (865)
..+|..++..-.+. + -...+|.+.+.+.+++ ...++.|+.+++.++.+..+...... ...+|.+++.|.+++
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 88888887653321 1 1235788888888887 89999999999999876654322222 237888999999999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~ 524 (865)
..+|..|+|++++++.+-. .....+ ...++.+++.+++.+.++|..|+++|.+++...... .++.
T Consensus 502 ~~iqeeAawAL~NLa~~~~------qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~ 568 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSE------DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQ 568 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcH------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHH
Confidence 9999999999999987422 122223 357889999999999999999999999998754322 3345
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHhcccCCchh--hHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccc-
Q 002921 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPV--YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT- 601 (865)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 601 (865)
+..++...+...+..++++++.+....+....... -...-++.+.+.+...+ +.....+..++..++..-.....
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~~a 646 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLCES 646 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHHHH
Confidence 56667776667777788888888664433210000 01246677877777532 22224566777777652221100
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh-hhhcccchHHHHHHHHhcCCChhHH
Q 002921 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-ESLVAQSNLRDMLLQCCMDDASDVR 680 (865)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~vr 680 (865)
.-....++.++..|... +.+.+..+..+++.+......+- ..++.. ..+|.|...+++.+.+++
T Consensus 647 vv~agaIpPLV~LLss~--------------~~~v~keAA~AL~nL~~~~~~~q~~~~v~~-GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 647 LATDEIINPCIKLLTNN--------------TEAVATQSARALAALSRSIKENRKVSYAAE-DAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHcCCHHHHHHHHhcC--------------ChHHHHHHHHHHHHHHhCCCHHHHHHHHHc-CCHHHHHHHHhCCChHHH
Confidence 01223455666666642 33566667788888886433322 223433 577778888999999999
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-cc-ccchHHH--HHHHHHH
Q 002921 681 QSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QE-ISPIVMT--VVLCLVP 756 (865)
Q Consensus 681 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~-~~~~~~~--il~~l~~ 756 (865)
+.|+.+++.++........-.-...++.+.+.+++. +.+.|++|++++..++.+.+ .+ +..++.. .+..+..
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G----~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~ 787 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG----TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD 787 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC----ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH
Confidence 999999999998764221111235678888888887 77999999999999998876 23 3233322 4556777
Q ss_pred HhcCchhhhhhHHHHHHHHHHhhhhhC-CC-cc-ccc-----HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCch
Q 002921 757 ILKHSEELNKSLIENSAITLGRLAWVC-PE-LV-SPH-----MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~~-~~-~~-~~~-----~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
+|...+ ......-.++.+++.+++.. .. .. .|+ .+.=+..+...+ ........+.+++.|..+.+.+|.
T Consensus 788 ~L~~~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 788 LLNSTD-LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred HHhcCC-cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChh
Confidence 776653 12222223677777777631 11 11 122 123345555666 345677888899999999998774
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.88 E-value=3.1e-18 Score=176.75 Aligned_cols=596 Identities=15% Similarity=0.150 Sum_probs=392.6
Q ss_pred hccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhccccHHhHH
Q 002921 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV 217 (865)
Q Consensus 140 l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~ 217 (865)
+.++.+..|..|++.|..=...++.. ..+++++|.+ -++ +.+-|+..++.+..+...+.+-..+
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga~----------~lfnqiLpll----Ms~tLeDqerhllVkvidriLyklDdlvrp 437 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGAG----------PLFNQILPLL----MSPTLEDQERHLLVKVIDRILYKLDDLVRP 437 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhccH----------HHHHHHHHHH----cCccccchhhhhHHHHHHHHHHhhcccchh
Confidence 45667788888988887665555431 2345555544 333 3345777777887777665444445
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchh
Q 002921 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHE 297 (865)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~ 297 (865)
+...++-.+-.++-+++...|...-+++..++...+ +..++..+-..+.+.|+-||...-.++..++++-. ..
T Consensus 438 YVhkILvViepllided~yar~egreIisnLakaaG------la~mistmrpDidn~deYVRnttarafavvasalg-ip 510 (1172)
T KOG0213|consen 438 YVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG------LATMISTMRPDIDNKDEYVRNTTARAFAVVASALG-IP 510 (1172)
T ss_pred ceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh------hHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC-cH
Confidence 554444444444556777777766677777776544 23344444445667788899888888777776621 12
Q ss_pred hHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 002921 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (865)
Q Consensus 298 ~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~ 377 (865)
.+.|++.. ++. ...+|..|..++.+...
T Consensus 511 ~llpfLka--------vc~--------------------------------------------SkkSwqaRhTgIkivqq 538 (1172)
T KOG0213|consen 511 ALLPFLKA--------VCG--------------------------------------------SKKSWQARHTGIKIVQQ 538 (1172)
T ss_pred HHHHHHHH--------Hhc--------------------------------------------cccchhhhchhhHHHHH
Confidence 22233322 111 01357889999999999
Q ss_pred HHhhhCcchhh---hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHH
Q 002921 378 LSNVFGDEILP---TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (865)
Q Consensus 378 l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (865)
++...|..+++ .++.++...+.+.+ -.+|-.+..+++.+++.....-...++.++..+++.+...-...-.+-+
T Consensus 539 Iail~Gcsvlphl~~lv~ii~~gl~De~---qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafL 615 (1172)
T KOG0213|consen 539 IAILSGCSVLPHLKPLVKIIEHGLKDEQ---QKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFL 615 (1172)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhhcccc---hhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 99999986655 56777788888888 8999999999999999887665677888999999998877777777788
Q ss_pred HHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccc--------hhhhH--------
Q 002921 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE--------LAPRL-------- 518 (865)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~--------~~~~~-------- 518 (865)
.++|.++...... ...-|...++-.+++-+++++...+.-....+...|..-+.. +..++
T Consensus 616 kAigyliplmd~e----ya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrm 691 (1172)
T KOG0213|consen 616 KAIGYLIPLMDAE----YASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRM 691 (1172)
T ss_pred HHHhhccccccHH----HHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhh
Confidence 8888877654321 233455688888888899988777776666666665432211 11111
Q ss_pred -----------------------HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC
Q 002921 519 -----------------------EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (865)
Q Consensus 519 -----------------------~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 575 (865)
..++..++.-+.+....-+.++.+++..+...+|..-.+....+.++..++..++..
T Consensus 692 A~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 692 ALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred hccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc
Confidence 122333333333333344567777777777777765444345566666777777654
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh
Q 002921 576 PNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI 655 (865)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 655 (865)
..++ .-++.+++.++.++|....||+++|+..++..|++. ...+++.++++++.++..++.--
T Consensus 772 tt~d---~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk--------------sa~vRqqaadlis~la~Vlktc~ 834 (1172)
T KOG0213|consen 772 TTED---SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK--------------SAKVRQQAADLISSLAKVLKTCG 834 (1172)
T ss_pred ccch---hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC--------------ChhHHHHHHHHHHHHHHHHHhcc
Confidence 3222 246788999999999999999999999999888853 55788999999999998776542
Q ss_pred hh-hcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH
Q 002921 656 ES-LVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIG 733 (865)
Q Consensus 656 ~~-~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~ 733 (865)
.. .+.. +--+|...+....+++.-+.++++..++...| ....|-+..++|.+...|++. ...+..|++..+|
T Consensus 835 ee~~m~~--lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr----heKVqen~IdLvg 908 (1172)
T KOG0213|consen 835 EEKLMGH--LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR----HEKVQENCIDLVG 908 (1172)
T ss_pred HHHHHHH--hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh----HHHHHHHHHHHHH
Confidence 22 2222 44466777878899999999999999988876 445677777888888888877 7799999999999
Q ss_pred HHHHhccccccc--hHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhh-CCCcccccH-------------------
Q 002921 734 ELAVKARQEISP--IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPELVSPHM------------------- 791 (865)
Q Consensus 734 ~l~~~~~~~~~~--~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~------------------- 791 (865)
.|+...++.+.+ |.--.+ .|+.+|... ++.+|.++..++|-++.. +|+.+..-+
T Consensus 909 ~IadrgpE~v~aREWMRIcf-eLlelLkah---kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaI 984 (1172)
T KOG0213|consen 909 TIADRGPEYVSAREWMRICF-ELLELLKAH---KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAI 984 (1172)
T ss_pred HHHhcCcccCCHHHHHHHHH-HHHHHHHHH---HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhh
Confidence 999998864422 222222 244555443 578999999888888753 333222110
Q ss_pred ---------HHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhcc
Q 002921 792 ---------EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASW 843 (865)
Q Consensus 792 ---------~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~ 843 (865)
-.+++.+++-... -....+..++++++.+++..++.-..+.-.+++.+.-.
T Consensus 985 aIVaE~c~pFtVLPalmneYrt-Pe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDA 1044 (1172)
T KOG0213|consen 985 AIVAETCGPFTVLPALMNEYRT-PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDA 1044 (1172)
T ss_pred hhhhhhcCchhhhHHHHhhccC-chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHh
Confidence 0233443332221 12345667888888888876655555555554444433
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=3.7e-17 Score=194.30 Aligned_cols=698 Identities=13% Similarity=0.062 Sum_probs=438.0
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhc-C----------CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Q 002921 14 FNEICRLLEQQISP--SSTADKSQIWQQLQQYSQ-F----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (865)
Q Consensus 14 ~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~-~----------p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~ 80 (865)
...+..+++.+.+. +.+ .|++|...|..+.+ + .++++.|..+|. +.+..+|..|+-.|.+.-.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~-~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~---sg~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQ-EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR---SGTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHH-HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhc
Confidence 34577777787755 556 88888888888753 2 457788888886 4568889888866655432
Q ss_pred hhhCcCCHhHH-----HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcC-cCCh------HHHHHHHHHhhccCC---h
Q 002921 81 TAYKSMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGW------LELLQALVTCLDSND---I 145 (865)
Q Consensus 81 ~~w~~~~~~~~-----~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~-~~~w------~~ll~~l~~~l~~~~---~ 145 (865)
+ ++.+ ....+.|+..|.+.+...|..++.++..++.... .+.| +..+|.|...+++++ .
T Consensus 88 ~------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 88 E------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred C------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 2 2223 2334567888888899999999999999997632 2223 456788888888764 2
Q ss_pred hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHH
Q 002921 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQ 224 (865)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~ 224 (865)
..+..+..+|..++..-...-.. -.-...+|.+.++++++++.++..|+.++..++...++....-+ ...++
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~-------IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP 234 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSA-------TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK 234 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHH-------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 34555677888887654322100 00134788999999999999999999999888766443221111 23467
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCC---------CHHHHHHHHHHHHHhhccC
Q 002921 225 GLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDT---------DDDVALEACEFWHSYFEAQ 293 (865)
Q Consensus 225 ~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~---------~~~v~~~a~~~l~~l~~~~ 293 (865)
.+..++.+ .+..+|..|..+|..++...++.-..... ..++.++..+... ....+..|.-++..++..
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg- 313 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG- 313 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-
Confidence 88888865 45689999999999999754433221111 2233333333322 244678888888888765
Q ss_pred CchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHH
Q 002921 294 LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (865)
Q Consensus 294 ~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~ 373 (865)
. ..+++.+...+.... |. .....+..
T Consensus 314 -~--------~~ll~~L~~ll~s~r-d~--------------------------------------------~~~ada~g 339 (2102)
T PLN03200 314 -M--------SALILYLGELSESPR-SP--------------------------------------------APIADTLG 339 (2102)
T ss_pred -c--------hhhHHHHHHhhcccc-hH--------------------------------------------HHHHHHHh
Confidence 1 223333322221110 00 01111223
Q ss_pred HHHHHHhhhCc--c---hh--hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh--hhhhccHHHHHHHHHhccCC
Q 002921 374 ALDVLSNVFGD--E---IL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDD 444 (865)
Q Consensus 374 ~l~~l~~~~~~--~---~~--~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d 444 (865)
.+..+...+.. + .+ ..+.+.+.+++.+.++ ....+.+.-+|..+..+.. ..+ +-.+.++.++..+..
T Consensus 340 ALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p--~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~ 415 (2102)
T PLN03200 340 ALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDT--KLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLITM 415 (2102)
T ss_pred hHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCC--chhHHHHHHHHHHhcCChHHHHHH--Hhccchhhhhhhhcc
Confidence 33333222211 1 11 1234566677776651 2234555566655433221 111 113467778889998
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhh-HHHHHH
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR-LEIILQ 523 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~ 523 (865)
.+..++..++|++..++..-.+. ...-.-...++.+++.|.+++..+|..|+++++++.....+.-... -...++
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~----~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGL----WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHH----HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 99999999999999988642210 0011123468899999999899999999999999976432222111 135678
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhH--hhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcccc
Q 002921 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL--DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGF 600 (865)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~ 600 (865)
.|.++|.+.+.+.+..+..++++++.. +.+.. ..+ ...+|.+++.+.+. +... ..+..++.++...-..
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir--~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~-- 563 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCH-SEDIR--ACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADA-- 563 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHH--HHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccch--
Confidence 888899888888889999999998862 22211 223 35788899888753 2222 4566666666543211
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh-h-hhcccchHHHHHHHHhcCCChh
Q 002921 601 TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-E-SLVAQSNLRDMLLQCCMDDASD 678 (865)
Q Consensus 601 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~-~-~~~~~~~l~~~l~~~l~~~~~~ 678 (865)
..++.++..|.. ++......+++.++.+.......- . .-...+..++.|...+++.+..
T Consensus 564 -----~~I~~Lv~LLls--------------dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ 624 (2102)
T PLN03200 564 -----ATISQLTALLLG--------------DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEE 624 (2102)
T ss_pred -----hHHHHHHHHhcC--------------CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHH
Confidence 123444444332 144566667888888876443321 1 1111124778888889999999
Q ss_pred HHHHHHHHHHHHHhhchhhhHh-hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc-cchHHH-HHHHHH
Q 002921 679 VRQSAFALLGDLARVCPVHLQA-RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-SPIVMT-VVLCLV 755 (865)
Q Consensus 679 vr~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~-il~~l~ 755 (865)
++..|++++..++....+.... .....+|.+...++.. +.+++..++|+|+.+......+- ..++.. .++.++
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~----~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~ 700 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN----TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI 700 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH
Confidence 9999999999999866543332 2345788888888887 67899999999999997544321 122332 677888
Q ss_pred HHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCc
Q 002921 756 PILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 756 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 826 (865)
.++...+ ..+++.++.+++.++........-.-...++.+...+.. .+...|+.|..+|.++.+..|
T Consensus 701 ~LL~~~d---~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~-G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 701 KLAKSSS---IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE-GTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHhCCC---hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhCCC
Confidence 8887763 678899999999998643322110112345666666665 456789999999999999876
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=6.6e-17 Score=180.39 Aligned_cols=552 Identities=15% Similarity=0.166 Sum_probs=345.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhchh--hhhhhHHHHHHHHhhhcCCCCH---HHHHHHHHHHHHhhccCCchh
Q 002921 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPHLRNLFEYMLQVNKDTDD---DVALEACEFWHSYFEAQLPHE 297 (865)
Q Consensus 223 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~---~v~~~a~~~l~~l~~~~~~~~ 297 (865)
...+.....+++++.|++.|-.|..++...+. ...-+.++|.......+.+.|+ ++....+..++.++.....
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-- 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-- 897 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence 44455556677888888888777777766552 2334455666666666777664 3444445555555544211
Q ss_pred hHHhhhhhHHHHHHhhccC---ChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 002921 298 NLKEFLPRLVPVLLSNMIY---ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (865)
Q Consensus 298 ~~~~~~~~l~~~ll~~l~~---~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~ 374 (865)
+.....++..+...-.. ..+|-+.++.. . .. +.-| + =.-..+.-
T Consensus 898 --~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G-------------------~------Lg-~Tp~--G---g~isTYKE 944 (1702)
T KOG0915|consen 898 --KSLVDSLVNTLTGGKRKAIKVSEETELFQEG-------------------T------LG-KTPD--G---GKISTYKE 944 (1702)
T ss_pred --HHHHHHHHHHHhccccccceeccchhcccCC-------------------c------CC-CCCC--C---CcchHHHH
Confidence 22233333333210000 01111111100 0 00 0000 0 01123444
Q ss_pred HHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHH
Q 002921 375 LDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (865)
Q Consensus 375 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (865)
|-.++.-.|+ |.++=.+++.-++... |..|.+|.+.++.+++...+.+.||+++++|.+...--||++.|+.+-.
T Consensus 945 Lc~LASdl~q---PdLVYKFM~LAnh~A~--wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~ 1019 (1702)
T KOG0915|consen 945 LCNLASDLGQ---PDLVYKFMQLANHNAT--WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMT 1019 (1702)
T ss_pred HHHHHhhcCC---hHHHHHHHHHhhhhch--hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHH
Confidence 4455555554 2333344444454332 9999999999999999999999999999999999999999999999876
Q ss_pred HHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccc
Q 002921 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQ 533 (865)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~ 533 (865)
..-+.+...-+. ....|+.+++..|+..+.+...+||+++|.|+..+++.- .+.+...++++...+++.+++.+
T Consensus 1020 sIW~~Li~D~k~-----~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK 1094 (1702)
T KOG0915|consen 1020 SIWNALITDSKK-----VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK 1094 (1702)
T ss_pred HHHHHhccChHH-----HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554332 367899999999999999999999999999999999864 35677788999999999999988
Q ss_pred hhhHHH---HHHHHHHHHHHhcccCC---chhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHH
Q 002921 534 RRNLRI---VYDAIGTLADAVGFELN---QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQP 606 (865)
Q Consensus 534 ~~~~~~---~~~~l~~l~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~ 606 (865)
+.++.. +..+++.++-.+++... ....++.++|.+++.=.. + .-+++ .-.+.++-.+++..|..+.||++.
T Consensus 1095 EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1095 ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 887764 45566666555443321 125677777776543211 1 22233 457888999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------HhhcccccCCCCCcc----hhH------hhhhhhhHHHHHhhhhhhhhcccchHHHHHH
Q 002921 607 VFQRCINIIQTQQL-------AKVDSVAAGAQYDKE----FVV------CCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (865)
Q Consensus 607 i~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~----~~~------~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 669 (865)
++|.+++....-.. .+..+. +.+ .|. -.++++..++..++.. .+. .+.|-+.
T Consensus 1173 LIp~ll~~~s~lE~~vLnYls~r~~~~------e~ealDt~R~s~aksspmmeTi~~ci~~iD~~---vLe--elip~l~ 1241 (1702)
T KOG0915|consen 1173 LIPLLLNAYSELEPQVLNYLSLRLINI------ETEALDTLRASAAKSSPMMETINKCINYIDIS---VLE--ELIPRLT 1241 (1702)
T ss_pred HHHHHHHHccccchHHHHHHHHhhhhh------HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH---HHH--HHHHHHH
Confidence 99998876542110 000000 000 111 1233333333333322 112 2555555
Q ss_pred HHhcC-CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc-cccchH
Q 002921 670 QCCMD-DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ-EISPIV 747 (865)
Q Consensus 670 ~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~ 747 (865)
..++. -.-..|..+...+.-++..++.++.||..+++..++..+.+. +..+++..+.++|.++..... +++.++
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR----Nesv~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR----NESVRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc----cHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 55543 233446677788889999999999999999999999999997 889999999999999987653 455555
Q ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCch
Q 002921 748 MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 748 ~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
..++. +.+.+. ++....++.++..+..+.++.+..|.+.++|..+-..... ..+...-++-++.=+-....
T Consensus 1318 e~~l~---~~l~k~----es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee--~Ka~q~Lw~dvW~e~vsgga 1388 (1702)
T KOG0915|consen 1318 ETLLA---DLLGKD----ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE--EKANQELWNDVWAELVSGGA 1388 (1702)
T ss_pred HHHHH---HHhccC----CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCCCCc
Confidence 44433 333433 2233556666666777778888889999998877554432 22333444444444444444
Q ss_pred hhHh-hHHHHHHHhhccCC
Q 002921 828 GALS-SLVFMCRAIASWHV 845 (865)
Q Consensus 828 ~~~~-~l~~~~~~~~~~~~ 845 (865)
+..+ ++..++..+..-..
T Consensus 1389 gtvrl~~~eiLn~iceni~ 1407 (1702)
T KOG0915|consen 1389 GTVRLYLLEILNLICENIT 1407 (1702)
T ss_pred chhhhhHHHHHHHHHHHhc
Confidence 4444 45555555444433
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=4.9e-15 Score=165.75 Aligned_cols=607 Identities=14% Similarity=0.149 Sum_probs=402.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHh--HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHh
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC 139 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~--~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~ 139 (865)
+..++.|+++.+.|-..+++.-. .++. ....|...+...|.|.+..+...++.-++.+......+.-.+++..|+..
T Consensus 829 s~nph~R~A~~VWLLs~vq~l~~-~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~t 907 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYLGQ-QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNT 907 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-CchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHH
Confidence 78899999999999888876432 2221 23566788889999999999999998888776654444445666666665
Q ss_pred hccCCh---------hHHh----------HHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHH
Q 002921 140 LDSNDI---------NHME----------GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKL 199 (865)
Q Consensus 140 l~~~~~---------~~r~----------~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~ 199 (865)
+..+.. ..-+ +.+....++|.-..+ +. -++++=.++++.++. ...-|..
T Consensus 908 l~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-l~----------qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 908 LTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-LG----------QPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-cC----------ChHHHHHHHHHhhhhchhhcccc
Confidence 533210 0000 011222222221111 10 156666677777664 5567888
Q ss_pred HHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHH
Q 002921 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (865)
Q Consensus 200 a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~ 279 (865)
|..-++.++....+.+.++++.++|.++..--||+..++.+...++..++......+..|+..|+.-++-.+.+....||
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 88888888887777888999999999999888999999999999999999887888889999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 002921 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (865)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (865)
..++-++..+.... ....+...++.+...+++.| ||+.
T Consensus 1057 easclAL~dLl~g~-~~~~~~e~lpelw~~~fRvm----DDIK------------------------------------- 1094 (1702)
T KOG0915|consen 1057 EASCLALADLLQGR-PFDQVKEKLPELWEAAFRVM----DDIK------------------------------------- 1094 (1702)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH----HHHH-------------------------------------
Confidence 99999999988763 23445556666666555433 2221
Q ss_pred cccccccHHHHHHHHHHHHHhhh---C--------cchhhhhHHHHHH-hhccCCCcchhHHHHHHHHHHHHHhchhhhh
Q 002921 360 DIVNVWNLRKCSAAALDVLSNVF---G--------DEILPTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (865)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~---~--------~~~~~~~~~~l~~-~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 427 (865)
-++|.+|-.+.+.+++.. + .+++..++|++.. .+-+.. ..+|..++..+..++...+..+
T Consensus 1095 -----EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v---~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1095 -----ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKV---NEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccch---HHHHHHHHHHHHHHHHhchhhh
Confidence 036777766665555443 2 3677888888754 233555 7899999999999999999999
Q ss_pred hccHHHHHHHHHhccCCCChHH-HHHHHHHHHhhHHHHhhhh----------------CCCcchhhHHHHHHHHHHHHcC
Q 002921 428 YPHLSEIVAFLIPLLDDKFPLI-RSISCWTLSRFSKFIVQDI----------------GHQNGREQFEKVLMGLLKRILD 490 (865)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~l~d 490 (865)
.||+++++|.++.....-++.| -.-++.+.+.=.+.+.... -+..+...+.+++|.+.+.+..
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999998887654433 3334444322222111100 0012455678888888888876
Q ss_pred C-CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcc-cCCchhhHhhhhHHH
Q 002921 491 T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPL 568 (865)
Q Consensus 491 ~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l 568 (865)
. .-..|..++..+..+...++..+.||.+.++..++..+.+.++.+++....+++.++....+ ++. .++..++..+
T Consensus 1247 sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~q--KLie~~l~~~ 1324 (1702)
T KOG0915|consen 1247 SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQ--KLIETLLADL 1324 (1702)
T ss_pred cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHH
Confidence 5 45567788888888888899999999999999999999998888888888899999887655 222 3444433322
Q ss_pred HHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHH
Q 002921 569 IAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (865)
Q Consensus 569 ~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~ 648 (865)
+... +... ...+.++..|+....+.+..|...++|.++ +...... ....++.. +.|..+.
T Consensus 1325 ---l~k~--es~~-siscatis~Ian~s~e~Lkn~asaILPLiF--La~~ee~---------Ka~q~Lw~---dvW~e~v 1384 (1702)
T KOG0915|consen 1325 ---LGKD--ESLK-SISCATISNIANYSQEMLKNYASAILPLIF--LAMHEEE---------KANQELWN---DVWAELV 1384 (1702)
T ss_pred ---hccC--CCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHH--HHHhHHH---------HHHHHHHH---HHHHHhC
Confidence 2221 1111 345556666888888889999999999874 2221100 00111222 1222222
Q ss_pred HHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH-hhHHHHHHHHHHhcCCCCCCCchhHHHH
Q 002921 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANN 727 (865)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 727 (865)
..-.+...-|.++ .+.+++....++..+.+|-.+...+..++........ |++-.+.+.+...++.. .++-++.
T Consensus 1385 sggagtvrl~~~e-iLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR----iwdGKe~ 1459 (1702)
T KOG0915|consen 1385 SGGAGTVRLYLLE-ILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR----IWDGKEE 1459 (1702)
T ss_pred CCCcchhhhhHHH-HHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc----ccccHHH
Confidence 2111112223333 4666666667777788888887877777776654443 78888888888888776 5666666
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHH
Q 002921 728 ACWAIGELAVKARQEISPIVMTVVLCLVPI 757 (865)
Q Consensus 728 a~~~l~~l~~~~~~~~~~~~~~il~~l~~~ 757 (865)
...++......+...+......+.....+.
T Consensus 1460 iLKAl~~~~~a~~~~v~~~~~si~~A~~~e 1489 (1702)
T KOG0915|consen 1460 ILKALASAFEAGLADVKRNMSSIEHAVMEE 1489 (1702)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHHHH
Confidence 666676666555544433333444444443
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7e-16 Score=159.54 Aligned_cols=495 Identities=15% Similarity=0.155 Sum_probs=323.5
Q ss_pred hCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhh
Q 002921 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (865)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 181 (865)
.++...+|.....+...+...-+......+.|-..+.+++. +...|++.....+.+....... +.....+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~~~ 97 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPISI 97 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------CcchhHH
Confidence 45677788888777776666544555567888888888775 4466666665556555543221 1234667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh-hhhhH
Q 002921 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHL 260 (865)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l 260 (865)
+..++..+.-+++.+|+....|+..+....... ....+++.+.+.++......|..+...+..+....+-. +.+
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 778888888899999999999998887543211 12233455555555555566666666666665543321 111
Q ss_pred HHHHHHHhhhcCCCCHHHHHH-HHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCC
Q 002921 261 RNLFEYMLQVNKDTDDDVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (865)
Q Consensus 261 ~~l~~~l~~~~~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i 339 (865)
..++..+.....+.....++. +.-.....+.. ......||+-.++|.++.......
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~--Lg~~~EPyiv~~lp~il~~~~d~~--------------------- 229 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGN--LGPPFEPYIVPILPSILTNFGDKI--------------------- 229 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh--cCCCCCchHHhhHHHHHHHhhccc---------------------
Confidence 122333333344443332222 22222222222 235567888888887765443211
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHH
Q 002921 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (865)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 419 (865)
-.+|.+|..+.+.+...++..-++.++|.+...+.+.. |+.+.+++..+|.+
T Consensus 230 -------------------------~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k---WrtK~aslellg~m 281 (569)
T KOG1242|consen 230 -------------------------NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK---WRTKMASLELLGAM 281 (569)
T ss_pred -------------------------hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh---hhhHHHHHHHHHHH
Confidence 13799999999999999988777777666655555557 99999999999999
Q ss_pred HhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhh------------h-CCC---------------
Q 002921 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD------------I-GHQ--------------- 471 (865)
Q Consensus 420 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~-~~~--------------- 471 (865)
+...++.+...+++++|.+...+.|.++.||.++..++-+++...... + .+.
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 999999999999999999999999999999999999999888765321 0 000
Q ss_pred ---cchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002921 472 ---NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 472 ---~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (865)
...+.+.-+++.+.+.+.+.+...+..++..+++++.-. ...+.||++.+++.+-..+.+...+++..+..+++.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 133455566666777777777777778888888888876 567899999999999999999877788899999999
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhccc
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSV 626 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 626 (865)
+.+.+|.. +.+...|.+.+...... ... ....+...+...++..-..+...+++.++.......
T Consensus 442 l~e~~g~~-----~f~d~~p~l~e~~~~~k-~~~---~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~------- 505 (569)
T KOG1242|consen 442 LLERLGEV-----SFDDLIPELSETLTSEK-SLV---DRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVL------- 505 (569)
T ss_pred HHHHHHhh-----cccccccHHHHhhccch-hhh---hhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhcc-------
Confidence 99999875 33667777766654322 111 122223333333333333344455554443322211
Q ss_pred ccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHH
Q 002921 627 AAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFA 685 (865)
Q Consensus 627 ~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 685 (865)
.++.++.+.+.++.-+-...+..+.+|+.+ +++.+.+.+.+.++.++..+.+
T Consensus 506 -----~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~--i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 506 -----IDERIRDGVIWLFYLLPYIFGFQFQPYIHE--ILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred -----chhhhccCeeehhhccchhhhHHhHHHHHH--HHHHHHHHhhhcCCccccchhh
Confidence 122344444445555556677888899887 8888888877777777766554
No 29
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.1e-15 Score=149.32 Aligned_cols=465 Identities=16% Similarity=0.225 Sum_probs=295.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhh---CCChhHH
Q 002921 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (865)
Q Consensus 34 ~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~---~~~~~vr 110 (865)
..|..+|.++++....|..+-+++.. ..+.+...+|+..+|++++..+..+++......|+.+++.++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 46889999999999999999999975 578899999999999999999999999888889998777553 4455999
Q ss_pred HHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc----cCC---CCCCCcchhhhHH
Q 002921 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD----SDV---PGLAECPINIFLP 183 (865)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~----~~~---~~~~~~~~~~l~~ 183 (865)
.+++.+++.++-+.+ .|.+-++.+++.+.+..+. ...-+.+|..+.++....-. ++. .+.+......++.
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 999999999998864 7888777777777776655 22334444444433221100 000 0001123344555
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHhc--cccHHhHHhHHHHHHHHHHhhCC--------------------------
Q 002921 184 RLLQFFQSP---HTSLRKLSLGSVNQFIM--LMPSALFVSMDQYLQGLFLLSND-------------------------- 232 (865)
Q Consensus 184 ~l~~~l~~~---~~~vr~~a~~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~-------------------------- 232 (865)
.+..+++++ +..+...+++|++++.. ..+....-....++..++..+++
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~ 236 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLP 236 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCc
Confidence 555666553 36778889999999876 34432221111122233332221
Q ss_pred ----------------------CCHHHHHHHHHHHHHHHhhchhhhh---hhHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 002921 233 ----------------------PSAEVRKLVCAAFNLLIEVRPSFLE---PHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (865)
Q Consensus 233 ----------------------~~~~~r~~~~~~l~~l~~~~~~~~~---~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~ 287 (865)
.+.+-+.+.+..+..+.+.+...+. .+.-.++..++-...+.+.++....+.+|.
T Consensus 237 ~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~ 316 (559)
T KOG2081|consen 237 LAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWY 316 (559)
T ss_pred hhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhh
Confidence 1222233334444444333221111 111233444444556677789999999999
Q ss_pred Hhhcc------CCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 002921 288 SYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (865)
Q Consensus 288 ~l~~~------~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (865)
.+.+. ......++||+.+++..+...+++.. |.+ +.- |+++
T Consensus 317 ~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~-~~~------------------------------~l~-Ee~~- 363 (559)
T KOG2081|consen 317 SLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP-DQF------------------------------DLP-EEES- 363 (559)
T ss_pred hhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC-ccc------------------------------cCc-cchh-
Confidence 98775 12345678999999999988888765 210 000 1111
Q ss_pred cccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHh
Q 002921 362 VNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (865)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 440 (865)
+....|....+.+..++...|+ +.+..+...+.+ +.+. |+.-+|+++.+..++......-.+.++.++..+.+
T Consensus 364 -~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 364 -EFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN 437 (559)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC
Confidence 2335799999999999999986 545444433333 3345 99999999999999987775545566666665555
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 002921 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (865)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 520 (865)
.=.. ..+|++++..+|.+.+|+.. ....+..++..+...+.... ....+..++..++..+.....+.++.
T Consensus 438 lp~Q--~~~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~ 507 (559)
T KOG2081|consen 438 LPEQ--APLRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPS 507 (559)
T ss_pred Cccc--hhHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4322 23999999999999999873 46667777788877777643 77788888888888887666555555
Q ss_pred HHHHHHHHhcccc-hhhHHHHHHHHHHHHHHhcc
Q 002921 521 ILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVGF 553 (865)
Q Consensus 521 i~~~l~~~l~~~~-~~~~~~~~~~l~~l~~~~~~ 553 (865)
+...+........ ..... .++.++.++...+.
T Consensus 508 ~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp~ 540 (559)
T KOG2081|consen 508 LLELIRSLDSTQINEEAAC-LLQGISLIISNLPA 540 (559)
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCH
Confidence 5443332222111 11122 45555555555443
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=6.9e-15 Score=152.25 Aligned_cols=477 Identities=15% Similarity=0.183 Sum_probs=337.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
..+...|..-.+ +-..+.+|-...++ --..+.+.++..+.-+.+.+++..+.++...........-..+.+.+.+.+.
T Consensus 67 ~~~~~~~~~~~v-~~~~~a~~~~~~d~-~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~ 144 (569)
T KOG1242|consen 67 LHNDNLRNNVVV-LEGTLAFHLQIVDP-RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT 144 (569)
T ss_pred chhHHHhhhhHH-HHHHHHHhccccCc-chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc
Confidence 345666655444 33444443322232 2334557788888889999999999999988776544555677888888888
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccHHhHHhHH
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMD 220 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~ 220 (865)
...-..|.++...+..++.+.+.....+ ..++..+...+.|... ..|..++.++......+...+.+++.
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~---------~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKE---------FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhh---------hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 8888889999999988888776543222 5677788888888644 44556777887777777777778888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002921 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (865)
Q Consensus 221 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (865)
.+++.++....|....+|..+..+...+....+.. -++.+++.++..+.+.....+..+++.+..++.. ....+.
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~--ap~qLs 290 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC--APKQLS 290 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh--chHHHH
Confidence 89999999999999999999999998888765542 1233333333333333445577888888877776 567778
Q ss_pred hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 002921 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (865)
Q Consensus 301 ~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (865)
-.++.++|.+...|..+.. .+|+++..++..++.
T Consensus 291 ~~lp~iiP~lsevl~DT~~----------------------------------------------evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKP----------------------------------------------EVRKAGIETLLKFGS 324 (569)
T ss_pred HHHhHhhHHHHHHHccCCH----------------------------------------------HHHHHHHHHHHHHHH
Confidence 8889999988776665432 279999999999999
Q ss_pred hhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhh-hccHHHHHHHHHhccCCCChHHHHHHHHHHHh
Q 002921 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (865)
Q Consensus 381 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (865)
......+..++|.+.+.+.++. - .-..++..|+.-. +-..+ .+-+.-++|.+.+.+.+.+...++.++..+++
T Consensus 325 vidN~dI~~~ip~Lld~l~dp~---~-~~~e~~~~L~~tt--FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 325 VIDNPDIQKIIPTLLDALADPS---C-YTPECLDSLGATT--FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred hhccHHHHHHHHHHHHHhcCcc---c-chHHHHHhhccee--eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHH
Confidence 9987768888999999998775 2 3344455554321 11111 36778899999999999999999999999999
Q ss_pred hHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhh-HH
Q 002921 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRN-LR 538 (865)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~ 538 (865)
++....+ +....+++..+++.+-..+.|+.|.||.-+..+++.+.+..+..- ++..++.+...+......+ +.
T Consensus 399 m~~LveD---p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~k~~~~~~ 472 (569)
T KOG1242|consen 399 MCKLVED---PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSEKSLVDRS 472 (569)
T ss_pred HHHhhcC---HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccchhhhhhH
Confidence 9987732 235678899999999999999999999999999999999876442 2566666666665554332 33
Q ss_pred HHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 002921 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (865)
Q Consensus 539 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 617 (865)
...+.+..+....|. +++..+++.+...........+.....+..+..+-...+..|.+|+.++++.+.+.+..
T Consensus 473 g~aq~l~evl~~~~v-----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 473 GAAQDLSEVLAGLGV-----EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred HHhhhHHHHHhcccc-----hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 445555555544443 56777777776655443222111234455566666677778999999999988877764
No 31
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.73 E-value=5.8e-14 Score=142.82 Aligned_cols=591 Identities=14% Similarity=0.112 Sum_probs=361.8
Q ss_pred CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH
Q 002921 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (865)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (865)
++...|...-.++.+++...+- ...+..+..-+.+.++-+|...-++.+.+++.++ +++++|.
T Consensus 258 ed~~~r~~g~eii~nL~~~~Gl---~~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg--------------v~~llpf 320 (975)
T COG5181 258 EDLKRRCMGREIILNLVYRCGL---GFSVSSMRPDITSKDEYVRNVTGRAVGVVADALG--------------VEELLPF 320 (975)
T ss_pred ccHHHhcccHHHHHHHHHHhcc---ceeeeeccCCcccccHHHHHHHHHHHHHHHHhhC--------------cHHHHHH
Confidence 4455555555666666655421 1122222333456678888888888888877665 2677888
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 002921 185 LLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (865)
Q Consensus 185 l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l 263 (865)
+-....+. +.+-|+..+++...+...+.-...+++..++.-+-..+.|....+|..+..+|..+++..+..=...++.+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 77777775 88999999999999988877777788888888888888888888898889999999988776655667777
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcc-CCc-hhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCc
Q 002921 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA-QLP-HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (865)
Q Consensus 264 ~~~l~~~~~~~~~~v~~~a~~~l~~l~~~-~~~-~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~ 341 (865)
+..++...+......- .+|+.+.... +.+ ++....+....+.+++..+...+++.
T Consensus 401 l~pLw~g~~~hrgk~l---~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeem-------------------- 457 (975)
T COG5181 401 LCPLWEGASQHRGKEL---VSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEM-------------------- 457 (975)
T ss_pred HHHHHHHHHhcCCchH---HHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhc--------------------
Confidence 7777765543211111 1222222111 000 11111222233333333222221110
Q ss_pred ccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc----chhhhhHHHHHHhhccCCCcchhHHHHHH----
Q 002921 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAV---- 413 (865)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~---- 413 (865)
+.-...+.+++...|. .....+.|.+. ++- |..|-|+=
T Consensus 458 ---------------------------kk~~l~v~~~C~~v~~~tp~~lr~~v~pefF----~~f---w~rr~A~dr~~~ 503 (975)
T COG5181 458 ---------------------------KKDLLVVERICDKVGTDTPWKLRDQVSPEFF----SPF---WRRRSAGDRRSY 503 (975)
T ss_pred ---------------------------chhHHHHHHHHhccCCCCHHHHHHhhcHHhh----chH---HHhhhccccccc
Confidence 0122333333444432 12223333322 233 66555441
Q ss_pred ----HHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc
Q 002921 414 ----LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (865)
Q Consensus 414 ----~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 489 (865)
.+-..++...++ +.++..++..++|+....|..+..+.+++...++.. ...+...+.++..++..++
T Consensus 504 k~v~~ttvilAk~~g~------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~---~~dErleerl~d~il~Afq 574 (975)
T COG5181 504 KQVVLTTVILAKMGGD------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL---GFDERLEERLYDSILNAFQ 574 (975)
T ss_pred ceeehhHHHHHHHcCC------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHH
Confidence 111122221111 346777888999998888888888888777766532 2344445566677777676
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH---HhcccCCchhhHhhhhH
Q 002921 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGFELNQPVYLDILMP 566 (865)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~l~~ 566 (865)
..+..+. -...+++.++...+....||++.|+..+++.|++....++..+.+.++.++. ++|+. ..+..+-.
T Consensus 575 eq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~----~~l~klg~ 649 (975)
T COG5181 575 EQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET----KELAKLGN 649 (975)
T ss_pred hcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH----HHHHHHhH
Confidence 5433221 1233455555555667789999999999999999888888877777776665 45543 34444444
Q ss_pred HHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhh
Q 002921 567 PLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLL 644 (865)
Q Consensus 567 ~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l 644 (865)
.+.+.+ +++.+++ ..++.++..|....+- ...|-...++|.+..+|++..+ .+....+.++
T Consensus 650 iLyE~l---ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~--------------Kv~~nti~lv 712 (975)
T COG5181 650 ILYENL---GEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQ--------------KVVANTIALV 712 (975)
T ss_pred HHHHhc---CcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhH--------------HHhhhHHHHH
Confidence 444444 3355655 6788888888887775 5778889999999999987532 3445566777
Q ss_pred hHHHHHhhhhhhhhcccchHHHHHHHH---hcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCc
Q 002921 645 SGLAEGLGSGIESLVAQSNLRDMLLQC---CMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721 (865)
Q Consensus 645 ~~l~~~~~~~~~~~~~~~~l~~~l~~~---l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 721 (865)
+.++..-++ |++...++.+.+.. ++..+.++|.+|...+|.+.+..|. ++++..++..|+.. .
T Consensus 713 g~I~~~~pe----yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvq----e 778 (975)
T COG5181 713 GTICMNSPE----YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQ----E 778 (975)
T ss_pred HHHHhcCcc----cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHH----H
Confidence 777654333 55433466665554 4568899999999999999988773 35667777777665 3
Q ss_pred hhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHH
Q 002921 722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIA 801 (865)
Q Consensus 722 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 801 (865)
...|-....+++-.++.++ || .+++.+..-...|+ ..+-...+.+++.+..+.++.-..|+-.+.+.+-.+
T Consensus 779 Rq~RvctsvaI~iVae~cg----pf--sVlP~lm~dY~TPe---~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDA 849 (975)
T COG5181 779 RQQRVCTSVAISIVAEYCG----PF--SVLPTLMSDYETPE---ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDA 849 (975)
T ss_pred HHhhhhhhhhhhhhHhhcC----ch--hhHHHHHhcccCch---hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3444445556666666665 32 12344443333332 233344667888888777777778887777777777
Q ss_pred hccCCChHHHHHHHHHHHHHHhh
Q 002921 802 LSMIRDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 802 l~~~~~~~~~~~~~~~l~~l~~~ 824 (865)
+.+ +|.--|..+...+.++.-.
T Consensus 850 ltD-rD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 850 LTD-RDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred hcc-cchHHHHHHHHHHHHHhcC
Confidence 766 4666677777666666654
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.4e-14 Score=142.11 Aligned_cols=410 Identities=13% Similarity=0.107 Sum_probs=308.7
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhcC-cC---ChHHHHH-HHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGG-IA---GWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~-~~---~w~~ll~-~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
.+..+|++.-..-|+++|.-+-.+++... .+ ....++. .......+++.+.|.+++..+....-..+..-
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~----- 78 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD----- 78 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-----
Confidence 45667888888899999999999998652 22 2345566 33455667777888899999888776665432
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
..+...++|.++.++.|++..+|..||..+.+++.....++..+++.+...++.+..|++..+|. +.+.+..+...
T Consensus 79 ---~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikd 154 (675)
T KOG0212|consen 79 ---AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKD 154 (675)
T ss_pred ---HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHH
Confidence 13678999999999999999999999999999998877778888888899999988888777764 45555555432
Q ss_pred c--hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhccc
Q 002921 252 R--PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (865)
Q Consensus 252 ~--~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (865)
- ...-.-.++.++|.+-.-+...++..|...++.+..+-..+ .-.+-.|++.+++.+++.+.+..++
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~e--------- 223 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDE--------- 223 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHH---------
Confidence 1 11112357888888877777778888888888777665542 2335568888888888777753322
Q ss_pred CCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh---Ccc-hhhhhHHHHHHhhccCCCcc
Q 002921 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GDE-ILPTLMPVIQAKLSASGDEA 405 (865)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---~~~-~~~~~~~~l~~~l~~~~~~~ 405 (865)
+|..+-.+++.+.... |.. -.+..++.+...+.+++
T Consensus 224 -------------------------------------Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~--- 263 (675)
T KOG0212|consen 224 -------------------------------------VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE--- 263 (675)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---
Confidence 6777777776665544 222 35677888888888888
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCCh-HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 484 (865)
...+..|+..+..+..-.++.+-+++..++..+++++.|..+ .++..+...-+.+...+..... ..+-.+..+++.+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~--~~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL--KEEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh--ccccchHHHHHHH
Confidence 899999999999999988888889999999999999998877 4777776666566555443210 1113456899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhh
Q 002921 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (865)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l 564 (865)
.+.+.+.....|..+...+..+....+..+..+..++++.|++.+.+.++.+...+++.+..++..... +.+..+
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-----~~~~~f 416 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-----PNLRKF 416 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-----ccHHHH
Confidence 999999989999999999999988889999999999999999999999999988888888888865432 233444
Q ss_pred hHHHHHHHh
Q 002921 565 MPPLIAKWQ 573 (865)
Q Consensus 565 ~~~l~~~l~ 573 (865)
+..+++.+.
T Consensus 417 l~sLL~~f~ 425 (675)
T KOG0212|consen 417 LLSLLEMFK 425 (675)
T ss_pred HHHHHHHHh
Confidence 555556554
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3e-13 Score=136.81 Aligned_cols=473 Identities=14% Similarity=0.126 Sum_probs=316.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccc-cHHhHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH
Q 002921 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (865)
Q Consensus 184 ~l~~~l~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~ 261 (865)
.+.+.++|...+-|++|..-+..++... ...-...++.+++.+.. ...+++..-|+.++-.+...+-..+..-.+|+.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 3566777877888888887777776532 11122345556665543 344555556666665555544444444445999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCc
Q 002921 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (865)
Q Consensus 262 ~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~ 341 (865)
.+++.++.++.|.+..+|..|++.+..++.. .+..+.+|++.++..+.+....++.
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv--~k~~v~~~Fn~iFdvL~klsaDsd~---------------------- 139 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKV--AKGEVLVYFNEIFDVLCKLSADSDQ---------------------- 139 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHH--hccCcccchHHHHHHHHHHhcCCcc----------------------
Confidence 9999999999999999999999999999876 6667778888888877554443211
Q ss_pred ccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-----chhhhhHHHHHHhhccCCCcchhHHHHHHHHH
Q 002921 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (865)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l 416 (865)
++ +.+.++++++.+.... --++.++|.+.+.+...+ +..|..-+..+
T Consensus 140 ------------------------~V-~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n---~~tR~flv~Wl 191 (675)
T KOG0212|consen 140 ------------------------NV-RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVIN---PMTRQFLVSWL 191 (675)
T ss_pred ------------------------cc-ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCC---chHHHHHHHHH
Confidence 12 2266777777666521 236888999999998887 89999999999
Q ss_pred HHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHH
Q 002921 417 GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQ 496 (865)
Q Consensus 417 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr 496 (865)
..+-...+-.+..|++.+++.+++.+.|+++.||..+-.+++++-..+... | ..-...++++.++..++++++.+|
T Consensus 192 ~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~--P--~s~d~~~~i~vlv~~l~ss~~~iq 267 (675)
T KOG0212|consen 192 YVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS--P--SSMDYDDMINVLVPHLQSSEPEIQ 267 (675)
T ss_pred HHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC--c--cccCcccchhhccccccCCcHHHH
Confidence 888776666778999999999999999999999999989999888877531 1 111457788899999999999999
Q ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCC
Q 002921 497 EAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (865)
Q Consensus 497 ~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 576 (865)
..|...+..|+.-.+..+.+|+..++..++.++.+........+-..+. ..+........
T Consensus 268 ~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n--------------------~~l~~l~s~~~ 327 (675)
T KOG0212|consen 268 LKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN--------------------GLLLKLVSSER 327 (675)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH--------------------HHHHHHHhhhh
Confidence 9999999999998999999999999999999887765532211111110 01111111100
Q ss_pred CCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhh
Q 002921 577 NSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE 656 (865)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 656 (865)
.|++ --...++..+.+.+... ..+.+.++++.+..+....++...
T Consensus 328 -------------------~~~~--id~~~ii~vl~~~l~~~--------------~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 328 -------------------LKEE--IDYGSIIEVLTKYLSDD--------------REETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred -------------------hccc--cchHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHHHhhCcchhh
Confidence 0001 01223334343333321 235677899999999999998888
Q ss_pred hhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh-hhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHH
Q 002921 657 SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (865)
Q Consensus 657 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l 735 (865)
.+.++ +++.++..++|++.+|...++.++..++..-.. ...+|+..++ .+...+ ..-.+..+..-+.++
T Consensus 373 ~h~~~--if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL----~~f~e~----~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 373 VHNDS--IFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL----EMFKED----TKLLEVRGNLIIRQL 442 (675)
T ss_pred hhccH--HHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH----HHHhhh----hHHHHhhhhHHHHHH
Confidence 88876 999999999999999999999999999986543 3444544444 444433 223333333444455
Q ss_pred HHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCC
Q 002921 736 AVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE 785 (865)
Q Consensus 736 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (865)
+..... +.+...+..++...++ -......+.++..+..+.|+
T Consensus 443 C~lL~a------E~IYr~~a~ILe~e~n--l~FAstMV~~Ln~iLlTStE 484 (675)
T KOG0212|consen 443 CLLLNA------ERIYRSIADILEREEN--LKFASTMVQALNTILLTSTE 484 (675)
T ss_pred HHHhCH------HHHHHHHHHHHhcccc--chHHHHHHHHHHhhhcccHH
Confidence 543321 2334455555554332 23444555555555544443
No 34
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.65 E-value=9.7e-15 Score=149.95 Aligned_cols=276 Identities=19% Similarity=0.324 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhcc-ccHHhHHhHHHHHHHHHHhhC---------CCC-----HHHHHHHHHHHHHHHhhchhhhhhhH
Q 002921 196 LRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN---------DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHL 260 (865)
Q Consensus 196 vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~---------~~~-----~~~r~~~~~~l~~l~~~~~~~~~~~l 260 (865)
+....++++.++... +|+.+.+++..++..+...+. +++ ++++..+|+.+..+++.+.+.+.+++
T Consensus 56 ~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l 135 (370)
T PF08506_consen 56 MLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFL 135 (370)
T ss_dssp HHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777643 688787888888876655431 111 45788899999999999999999999
Q ss_pred HHHHHHHhhhcCC-----CCHHHHHHHHHHHHHhhccCCchhhH--HhhhhhHHHHH-HhhccCChhhhhhhhhcccCCC
Q 002921 261 RNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHENL--KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESL 332 (865)
Q Consensus 261 ~~l~~~l~~~~~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~ 332 (865)
+.++..+++.+.. ..+.+...++.|+.++++.......+ ++++++++..+ ++.|+..++|+|.|++||.|
T Consensus 136 ~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E-- 213 (370)
T PF08506_consen 136 PTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE-- 213 (370)
T ss_dssp HHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH--
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH--
Confidence 9998888876532 24667889999999988763222222 68889998755 69999999999999999875
Q ss_pred CCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhc----cCCCcchhH
Q 002921 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKD 408 (865)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~ 408 (865)
|||..+ |.+ +..+.|++|.+++..+++.+++.+.+.+...+.++++ ++ ..+|+.
T Consensus 214 -----YIrrd~-----------e~s-----d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~-~~~w~~ 271 (370)
T PF08506_consen 214 -----YIRRDL-----------EGS-----DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP-SNNWRS 271 (370)
T ss_dssp -----HHHHHS-----------CSS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TT-HHH
T ss_pred -----HHHhhc-----------ccc-----ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-cccHHH
Confidence 444211 111 1236899999999999999998888887777777776 22 234999
Q ss_pred HHHHHHHHHHHHhchhh---hh---hc--cHHH-HHHHHHhccC---CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhh
Q 002921 409 REAAVLALGAIAEGCIK---GL---YP--HLSE-IVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~---~~---~~--~l~~-i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (865)
+++|+..++.++..... .+ .+ .+.+ ....+++.|. +.+|.+|..|++.+..|...++ .+.
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~--------~~~ 343 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP--------KEQ 343 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---------HHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC--------HHH
Confidence 99999999999875521 11 11 1122 2223444444 6789999999999887777653 567
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAF 503 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al 503 (865)
+..+++.++..|.+++..|+..|+.|+
T Consensus 344 l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 889999999999999999999998875
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=8.6e-12 Score=140.78 Aligned_cols=505 Identities=17% Similarity=0.157 Sum_probs=308.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCCCc-HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhH
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDF-NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~---~~p~~-~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~ 90 (865)
+++...+.... .+.. .|+.+-+.|-.+. .+.++ .......+. +.+...|..+-..+..... -+++.
T Consensus 7 ~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~~-----~~~~~ 76 (526)
T PF01602_consen 7 QELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLIS---SKDLELKRLGYLYLSLYLH-----EDPEL 76 (526)
T ss_dssp HHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCS---SSSHHHHHHHHHHHHHHTT-----TSHHH
T ss_pred HHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC---CCCHHHHHHHHHHHHHHhh-----cchhH
Confidence 45556565544 3555 6777777666543 23222 233444443 6788999998887744333 34555
Q ss_pred HHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCC
Q 002921 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (865)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~ 170 (865)
.-.+.+.+.+-|.++++.+|..+..+++.+.. ++..+.+++.+.+.+.++++.+|..|+.++..+.+..++..
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---- 149 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---- 149 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH----
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH----
Confidence 55667778888999999999998888888774 45678899999999999999999999999999999876543
Q ss_pred CCCCCcchhh-hHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002921 171 PGLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (865)
Q Consensus 171 ~~~~~~~~~~-l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 249 (865)
+. +++.+.+.+.|+++.|+..|+.++..+ ...++.....++.+.+.+.+.+..+++-.+..+++++..++
T Consensus 150 --------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 150 --------EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp --------HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred --------HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 33 799999999999999999999999998 33333323445556666666666667766666666666555
Q ss_pred hhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhccc
Q 002921 250 EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (865)
Q Consensus 250 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (865)
...+..... ..+++.+...+++.++.|...++.++..+
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l---------------------------------------- 258 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKL---------------------------------------- 258 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHh----------------------------------------
Confidence 443332210 22333322222233333333333333222
Q ss_pred CCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCcchhH
Q 002921 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKD 408 (865)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~ 408 (865)
.+. .....+.+.+...+.+++ +..
T Consensus 259 ----------------------------------------------------~~~~~~~~~~~~~L~~lL~s~~---~nv 283 (526)
T PF01602_consen 259 ----------------------------------------------------SPSPELLQKAINPLIKLLSSSD---PNV 283 (526)
T ss_dssp ----------------------------------------------------SSSHHHHHHHHHHHHHHHTSSS---HHH
T ss_pred ----------------------------------------------------hcchHHHHhhHHHHHHHhhccc---chh
Confidence 111 123445556666677777 888
Q ss_pred HHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
|..++.++..++...++.+. +.... +.....++++.+|..++..+..++. ......+++.+.+.+
T Consensus 284 r~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~-----------~~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 284 RYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN-----------ESNVKEILDELLKYL 348 (526)
T ss_dssp HHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc-----------ccchhhHHHHHHHHH
Confidence 99998888888776543333 21111 2222347889999999988887775 344566888888888
Q ss_pred cC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHH
Q 002921 489 LD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP 567 (865)
Q Consensus 489 ~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 567 (865)
.+ ++..++..++.+++.++.........|+ +.+++.+..........+...+..+....+ ..-..++..
T Consensus 349 ~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v----~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~------~~~~~~l~~ 418 (526)
T PF01602_consen 349 SELSDPDFRRELIKAIGDLAEKFPPDAEWYV----DTLLKLLEISGDYVSNEIINVIRDLLSNNP------ELREKILKK 418 (526)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHHGSSHHHHH----HHHHHHHHCTGGGCHCHHHHHHHHHHHHST------TTHHHHHHH
T ss_pred HhccchhhhhhHHHHHHHHHhccCchHHHHH----HHHHHhhhhccccccchHHHHHHHHhhcCh------hhhHHHHHH
Confidence 54 3788999999999999887755544444 444555555444444455555665554432 222345666
Q ss_pred HHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhH
Q 002921 568 LIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSG 646 (865)
Q Consensus 568 l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~ 646 (865)
+.+.+.+.. ++.+ ..++-++|..+..... ......++..+.+.+.. .+.+++..++.++..
T Consensus 419 L~~~l~~~~--~~~~~~~~~wilGEy~~~~~~--~~~~~~~~~~l~~~~~~--------------~~~~vk~~ilt~~~K 480 (526)
T PF01602_consen 419 LIELLEDIS--SPEALAAAIWILGEYGELIEN--TESAPDILRSLIENFIE--------------ESPEVKLQILTALAK 480 (526)
T ss_dssp HHHHHTSSS--SHHHHHHHHHHHHHHCHHHTT--TTHHHHHHHHHHHHHTT--------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--HHHHHHHHHhhhcccCCcccc--cccHHHHHHHHHHhhcc--------------ccHHHHHHHHHHHHH
Confidence 777776532 2222 4455555555554443 01334444444332221 123455556666655
Q ss_pred HHHHhhhhhhhhcccchHHHHHHHHhc--CCChhHHHHHHHHHHH
Q 002921 647 LAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGD 689 (865)
Q Consensus 647 l~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~~l~~ 689 (865)
+....+..- .- +.+.+.+..+.+ +.+.+||+.|...+.-
T Consensus 481 l~~~~~~~~--~~--~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 481 LFKRNPENE--VQ--NEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHHSCSTT--HH--HHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHhhCCchh--hH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 555443211 11 137777777777 7899999999885543
No 36
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-09 Score=113.19 Aligned_cols=685 Identities=15% Similarity=0.122 Sum_probs=374.9
Q ss_pred HHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC--ChhHHhHHHHHH-HHHHhhchhhcccCC
Q 002921 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDAL-SKICEDIPQVLDSDV 170 (865)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~L-~~l~~~~~~~~~~~~ 170 (865)
+++.+.+.| +.++.+|..+-..+-.+- .-|.++-.+.+.+.++ ++.+|..|..-+ ..+.+.+.....+..
T Consensus 5 llqcf~qTl-dada~~rt~AE~~Lk~le------KqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i 77 (970)
T COG5656 5 LLQCFLQTL-DADAGKRTIAEAMLKDLE------KQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGI 77 (970)
T ss_pred HHHHHHHHh-ccCcchhhHHHHHHHHhh------cCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCC
Confidence 444444433 456677776655554433 3378888888888765 557776665555 666666655322211
Q ss_pred C-CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh-cc-ccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002921 171 P-GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI-ML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 171 ~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~-~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 247 (865)
. +.-...-+.+...++..+..+ +.+-+.++.+....+ .. .|...+. +.+....++.+++....-.++-|+..
T Consensus 78 ~~Dek~e~K~~lienil~v~l~s-p~~tr~~l~ail~~I~seD~ps~~wg----l~p~~~nll~s~ea~~vy~gLlcl~e 152 (970)
T COG5656 78 KADEKSEAKKYLIENILDVFLYS-PEVTRTALNAILVNIFSEDKPSDLWG----LFPKAANLLRSSEANHVYTGLLCLEE 152 (970)
T ss_pred CCcccHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHhccccCchhhcc----cchHHHHhhcccchhHHHHHHHHHHH
Confidence 1 000112233444444444443 344444555555444 22 2333333 34444555566665555667777777
Q ss_pred HHhhchh-------hhhhhHHHHHHHHhhhcC---C-CC---HHHHHHHHHHHHHhhccCCchhhHHhhhh------hHH
Q 002921 248 LIEVRPS-------FLEPHLRNLFEYMLQVNK---D-TD---DDVALEACEFWHSYFEAQLPHENLKEFLP------RLV 307 (865)
Q Consensus 248 l~~~~~~-------~~~~~l~~l~~~l~~~~~---~-~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~------~l~ 307 (865)
+++.+.- .+.+.+..+.|.+.+... . .+ .++-...+..+..+|-. .+++++. ..+
T Consensus 153 lfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~-----~LP~~lsa~e~f~sw~ 227 (970)
T COG5656 153 LFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY-----SLPDFLSAIETFSSWF 227 (970)
T ss_pred HHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh-----hCCHHHccchhhHHHH
Confidence 7765431 223334444555444321 1 22 23333334433333322 2222222 122
Q ss_pred HHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc-cHHHHHHHHHHHHHhhhCcch
Q 002921 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEI 386 (865)
Q Consensus 308 ~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~-~~r~~a~~~l~~l~~~~~~~~ 386 (865)
...+..+...-+. +.+..|| +......| +.+++|...+.++...+++..
T Consensus 228 ql~l~i~qkplp~-evlsldp-----------------------------evRs~~~wvKckKWa~ynLyR~fqRy~k~s 277 (970)
T COG5656 228 QLSLRILQKPLPN-EVLSLDP-----------------------------EVRSLSKWVKCKKWAAYNLYRSFQRYIKKS 277 (970)
T ss_pred HHHHHHHcCCCCH-HHhccCh-----------------------------hhccccchhhhhHHHHHHHHHHHHHhcchh
Confidence 2223333321110 1111111 11122334 678899999999988886321
Q ss_pred -----------hhhhHHHHHH-hhcc-CC---CcchhHHHHHHHHHHHHHhchh------hhhhccHHHHHH-HHHhccC
Q 002921 387 -----------LPTLMPVIQA-KLSA-SG---DEAWKDREAAVLALGAIAEGCI------KGLYPHLSEIVA-FLIPLLD 443 (865)
Q Consensus 387 -----------~~~~~~~l~~-~l~~-~~---~~~~~~r~~a~~~l~~l~~~~~------~~~~~~l~~i~~-~l~~~l~ 443 (865)
...++|.+.+ .++. .. ..-|. ....+..++.+.+.|. ..+.||+.-++. .+++++.
T Consensus 278 ~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWl-sd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc 356 (970)
T COG5656 278 YKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWL-SDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLC 356 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeec-chHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcC
Confidence 1113333322 1211 01 00032 3456667776666654 234566666555 3455443
Q ss_pred -----------CCChHH-----------------------------------------------------------HHHH
Q 002921 444 -----------DKFPLI-----------------------------------------------------------RSIS 453 (865)
Q Consensus 444 -----------d~~~~v-----------------------------------------------------------r~~a 453 (865)
||...+ ...|
T Consensus 357 ~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~ega 436 (970)
T COG5656 357 LSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGA 436 (970)
T ss_pred CChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhH
Confidence 222222 2334
Q ss_pred HHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Q 002921 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ 533 (865)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 533 (865)
+.+++.+...+... +......-.-+++.+++.++++..-.|.+||..++.+-...++. ..+.++++...+++++.+
T Consensus 437 lr~lasi~s~itk~--sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~ 512 (970)
T COG5656 437 LRLLASIKSFITKM--SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNH 512 (970)
T ss_pred HHHHHHHHHHhccC--chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCC
Confidence 44444444422210 00112223456777788889988899999999999885444322 245667777788888877
Q ss_pred hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHH
Q 002921 534 RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (865)
Q Consensus 534 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 613 (865)
.+++-.+.-|+..+.... ++. +-+..-+|..++.+-..+ ++-++..+-+|+..++..+.++..||.++++..+.+
T Consensus 513 lpv~ieAalAlq~fi~~~--q~h--~k~sahVp~tmekLLsLS-n~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 513 LPVMIEAALALQFFIFNE--QSH--EKFSAHVPETMEKLLSLS-NTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred cchhhhHHHHHHHHHhch--hhh--HHHHhhhhHHHHHHHHhc-ccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 788888888888877654 222 455556666666655443 334445677888999999999999999998877765
Q ss_pred ----HHHHHHHHhhcccccCCCCCcch-hHhhhhhhhHHHHHhhhhh--hhhcccchHHHHHHHHhcCCChhHHHHHHHH
Q 002921 614 ----IIQTQQLAKVDSVAAGAQYDKEF-VVCCLDLLSGLAEGLGSGI--ESLVAQSNLRDMLLQCCMDDASDVRQSAFAL 686 (865)
Q Consensus 614 ----~l~~~~~~~~~~~~~~~~~~~~~-~~~al~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~ 686 (865)
+........ +|..+.-+|.+. ..+.+..+.+++-++.... ..++.+ .+.|.+...+++.-.++.+.|+..
T Consensus 588 qFlkiaq~l~ens--~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~di 664 (970)
T COG5656 588 QFLKIAQSLLENS--SDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDI 664 (970)
T ss_pred HHHHHHHHHHcCC--ccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 322222211 111111113333 3366777777777665432 233443 588888888888888999999998
Q ss_pred HHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHhcCchh
Q 002921 687 LGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS---PIVMTVVLCLVPILKHSEE 763 (865)
Q Consensus 687 l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~il~~l~~~l~~~~~ 763 (865)
+..+.-. ...+.|-.+.++..+.+.+.++. .....+.+.-++.+++..++.+|. .|...++......+.+..+
T Consensus 665 ldg~tf~-skeI~pimwgi~Ell~~~l~~~~---t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n 740 (970)
T COG5656 665 LDGYTFM-SKEIEPIMWGIFELLLNLLIDEI---TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN 740 (970)
T ss_pred HhhhhHH-HHHhhhhhhHHHHHHHhcccccc---hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhh
Confidence 8776644 45667889999999999988873 135677888999999999887663 3555555555555555432
Q ss_pred hhhhHHHHHHHHHHhhhhhCCC-cccccHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHHhhCchhhH------hhHHH
Q 002921 764 LNKSLIENSAITLGRLAWVCPE-LVSPHMEHFMQPWCIALSMI-RDDTEKEDAFRGLCAMVKANPSGAL------SSLVF 835 (865)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~ 835 (865)
.- .-+..++..+-.++....+ ...+|+|-++...-+.+... +....+.-+++...+-+...|-..+ .++..
T Consensus 741 ~l-~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~ 819 (970)
T COG5656 741 FL-EDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQS 819 (970)
T ss_pred hH-HHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHH
Confidence 11 1223334444444444444 45567776666655444432 2234566677777777777785433 34555
Q ss_pred HHHHhhcc
Q 002921 836 MCRAIASW 843 (865)
Q Consensus 836 ~~~~~~~~ 843 (865)
|+..+.+-
T Consensus 820 FF~~wf~~ 827 (970)
T COG5656 820 FFEKWFSQ 827 (970)
T ss_pred HHHHHHhc
Confidence 55555443
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.63 E-value=4.7e-11 Score=134.78 Aligned_cols=509 Identities=17% Similarity=0.197 Sum_probs=322.0
Q ss_pred HHHHHHHHhhhhhCC--ChhH-HHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 91 QQYIKSELLPCLGAA--DRHI-RSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 91 ~~~i~~~ll~~l~~~--~~~v-r~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
++.+.+.+-+.+.+. +..- ++.+..++...... .....+++.+.+.+.+.+...|+.+...+..+...-++.
T Consensus 2 ~~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G---~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~-- 76 (526)
T PF01602_consen 2 RKRISQELAKILNSFKIDISKKKEALKKLIYLMMLG---YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL-- 76 (526)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--
Confidence 445666777777665 4433 33333344433332 233467888899999999999999999888887765542
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 247 (865)
.--+.+.+.+-++++++.+|..|+.+++++.. .+..+.+++.+...+.++++.+|+.|+.++..
T Consensus 77 ----------~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~ 140 (526)
T PF01602_consen 77 ----------LILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLK 140 (526)
T ss_dssp ----------HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 24467778888999999999999999999873 23345567777888889999999999999999
Q ss_pred HHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhc
Q 002921 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (865)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~ 327 (865)
+....|+.+... +++.+.+.+.+.++.++..|+.++..+ +. ..+.....++.++..+.+.+...
T Consensus 141 i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~--~~~~~~~~~~~~~~~L~~~l~~~---------- 204 (526)
T PF01602_consen 141 IYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KC--NDDSYKSLIPKLIRILCQLLSDP---------- 204 (526)
T ss_dssp HHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC--THHHHTTHHHHHHHHHHHHHTCC----------
T ss_pred HhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-cc--CcchhhhhHHHHHHHhhhccccc----------
Confidence 999988876553 455555667888899999999999888 22 11111133444444443332211
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcc--hh--hhhHHHHHHhhccCCC
Q 002921 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE--IL--PTLMPVIQAKLSASGD 403 (865)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~--~~--~~~~~~l~~~l~~~~~ 403 (865)
..| .+.....++. ...+.. .. ..+++.+...+++.+
T Consensus 205 -----------------------------------~~~-~q~~il~~l~---~~~~~~~~~~~~~~~i~~l~~~l~s~~- 244 (526)
T PF01602_consen 205 -----------------------------------DPW-LQIKILRLLR---RYAPMEPEDADKNRIIEPLLNLLQSSS- 244 (526)
T ss_dssp -----------------------------------SHH-HHHHHHHHHT---TSTSSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----------------------------------chH-HHHHHHHHHH---hcccCChhhhhHHHHHHHHHHHhhccc-
Confidence 123 2333334443 333221 11 346777777777777
Q ss_pred cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002921 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (865)
+.+...+..++..+..... .+..+++.+...+.++++.+|..++.++..++...++. +... ..
T Consensus 245 --~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---------v~~~-~~ 307 (526)
T PF01602_consen 245 --PSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---------VFNQ-SL 307 (526)
T ss_dssp --HHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---------HGTH-HH
T ss_pred --cHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---------hhhh-hh
Confidence 8888888888886654322 56678888999999999999999999998887764221 1111 11
Q ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHhcccCCchhhH
Q 002921 484 LLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (865)
Q Consensus 484 l~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 561 (865)
.+..+. +++..+|..++..+..++.. .....+++.|...+.+. +...+..+..+++.++...... .
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~------~ 375 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD------A 375 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS------H
T ss_pred hhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch------H
Confidence 222344 77899999999999988863 23455777777777444 4557778899999988877543 3
Q ss_pred hhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhh
Q 002921 562 DILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCL 641 (865)
Q Consensus 562 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al 641 (865)
+..++.+++.+...+ +.....++..+..+....... -..++..+++.+... .+.+++..++
T Consensus 376 ~~~v~~l~~ll~~~~--~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~-------------~~~~~~~~~~ 436 (526)
T PF01602_consen 376 EWYVDTLLKLLEISG--DYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDI-------------SSPEALAAAI 436 (526)
T ss_dssp HHHHHHHHHHHHCTG--GGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSS-------------SSHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc--ccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHh-------------hHHHHHHHHH
Confidence 445555666665432 212245555565555443221 223444444444420 1345555566
Q ss_pred hhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh-hhHhhHHHHHHHHHHhcC--CCCC
Q 002921 642 DLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAAKQLN--TPKL 718 (865)
Q Consensus 642 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~--~~~~ 718 (865)
-.+|......+. ....+ .++..+...+.+.+..+|...+.++..+....+. ...+ .+++.+.+... +.
T Consensus 437 wilGEy~~~~~~--~~~~~--~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~---~i~~~~~~~~~~~s~-- 507 (526)
T PF01602_consen 437 WILGEYGELIEN--TESAP--DILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN---EILQFLLSLATEDSS-- 507 (526)
T ss_dssp HHHHHHCHHHTT--TTHHH--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH---HHHHHHHCHHHHS-S--
T ss_pred hhhcccCCcccc--cccHH--HHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH---HHHHHHHHHhccCCC--
Confidence 666665555544 00222 3777777777778888999998888888877653 2333 44444444444 44
Q ss_pred CCchhHHHHHHHHHHHH
Q 002921 719 KETVSVANNACWAIGEL 735 (865)
Q Consensus 719 ~~~~~~~~~a~~~l~~l 735 (865)
+.++|+-|...+.-+
T Consensus 508 --~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 508 --DPEVRDRAREYLRLL 522 (526)
T ss_dssp --SHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHH
Confidence 789999887766543
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.9e-14 Score=144.26 Aligned_cols=323 Identities=16% Similarity=0.164 Sum_probs=226.6
Q ss_pred hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhh
Q 002921 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (865)
Q Consensus 388 ~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (865)
.-++|.+.+.+...+. ...+..|.++|..++.+..+.-.-..+ ..+|.++.++.+++..|+..|.|+||+++...+.
T Consensus 108 ~G~v~~lV~~l~~~~~--~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDN--PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCC--hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 3567777777764332 889999999999999988875544443 3788899999999999999999999999986543
Q ss_pred hhCCCcchhhHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHhcccchhhHHHHHHHH
Q 002921 467 DIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (865)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~l~d~~~-~vr~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l 544 (865)
. ...-.-..+++.|+..+..+.+ .....+.|+|.++|+... ..-...+..+++.|..++...+..++..++.++
T Consensus 186 ~----Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 186 C----RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred H----HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 1111234677888888887654 667789999999998752 222345678899999999999999999999999
Q ss_pred HHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhc
Q 002921 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVD 624 (865)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 624 (865)
..+.....+... .-.-..++|.+++.+...
T Consensus 262 syLsdg~ne~iq-~vi~~gvv~~LV~lL~~~------------------------------------------------- 291 (514)
T KOG0166|consen 262 SYLTDGSNEKIQ-MVIDAGVVPRLVDLLGHS------------------------------------------------- 291 (514)
T ss_pred HHHhcCChHHHH-HHHHccchHHHHHHHcCC-------------------------------------------------
Confidence 887754332211 001122333333333322
Q ss_pred ccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhchhhhHhhHH
Q 002921 625 SVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQARLS 703 (865)
Q Consensus 625 ~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (865)
+..++.-++.++++++.+.+......+.. ..+|.+..++. .....+|.+|+++++.++.+...++...+.
T Consensus 292 --------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~-~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid 362 (514)
T KOG0166|consen 292 --------SPKVVTPALRAIGNIVTGSDEQTQVVINS-GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID 362 (514)
T ss_pred --------CcccccHHHhhccceeeccHHHHHHHHhc-ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11223334555555554444444444443 57777777777 455669999999999999987777766655
Q ss_pred -HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHH--HHHHHHHHhcCchhhhhhHHHHHHHHHHhhh
Q 002921 704 -DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMT--VVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (865)
Q Consensus 704 -~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (865)
.++|.+...++.. +..+|..|+|+++++...+..+-..|+.. +++.+..+|...+ ..+...++.++..+.
T Consensus 363 a~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D---~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 363 ANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD---VKIILVALDGLENIL 435 (514)
T ss_pred cccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC---hHHHHHHHHHHHHHH
Confidence 4999999999988 67899999999999988776555566533 7888888886653 445777777777776
Q ss_pred hh
Q 002921 781 WV 782 (865)
Q Consensus 781 ~~ 782 (865)
..
T Consensus 436 ~~ 437 (514)
T KOG0166|consen 436 KV 437 (514)
T ss_pred HH
Confidence 53
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.60 E-value=1.4e-10 Score=129.51 Aligned_cols=409 Identities=14% Similarity=0.130 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCcHHHHHHhhh-cccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHH
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILA-RAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~-~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i 94 (865)
+..++....++|-+ .||-.--++.++.+ +|+........+. +-.+.++.+|-+|...|.. -..++..+.+
T Consensus 70 F~dVvk~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~-------Ir~~~i~e~l 141 (746)
T PTZ00429 70 FVDVVKLAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC-------IRVSSVLEYT 141 (746)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc-------CCcHHHHHHH
Confidence 44555556667777 88888888888765 7774333333332 2236788899888766532 1235566677
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCC-hHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc------
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD------ 167 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~------ 167 (865)
...+.+++.++++.||+.++-++.++.+.++.-. -.++++.|.+++.+.++.+..+|+.+|..+.+..+..+.
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~ 221 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWV 221 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 7788888999999999999999999998764321 124677788889999999999999999888754321000
Q ss_pred -------cCCCCC--------C-------CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHH
Q 002921 168 -------SDVPGL--------A-------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQ 224 (865)
Q Consensus 168 -------~~~~~~--------~-------~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~ 224 (865)
.+.... + +.....++..+...+++.++.|...|++++..+....++..... +..+-.
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~ 301 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNT 301 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 000000 0 11234566677777788888999999998888876543332222 222223
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhh
Q 002921 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (865)
Q Consensus 225 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 304 (865)
.++.+ .+++++++-.++..+..++...|..+.+++..++. ..+|+ ..++...++.+..++..... .
T Consensus 302 pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~----~~~Dp-~yIK~~KLeIL~~Lane~Nv--------~ 367 (746)
T PTZ00429 302 ALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYV----RYSDP-PFVKLEKLRLLLKLVTPSVA--------P 367 (746)
T ss_pred HHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhc----ccCCc-HHHHHHHHHHHHHHcCcccH--------H
Confidence 34444 34567888889999999998888887776544332 23343 45899999999999876322 2
Q ss_pred hHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc
Q 002921 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (865)
Q Consensus 305 ~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~ 384 (865)
.++..+..+.... | -.+++.+...++.++..++.
T Consensus 368 ~IL~EL~eYa~d~----------------------------------------D------~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 368 EILKELAEYASGV----------------------------------------D------MVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred HHHHHHHHHhhcC----------------------------------------C------HHHHHHHHHHHHHHHHhChH
Confidence 2233332222210 0 12788899999999987754
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc---CCCChHHHHHHHHHHHhhH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~l~ 461 (865)
....++..+.+.+.+.. - ....++..+..+....++.. +++.+...+ .=.++..|.+.+|.+|+++
T Consensus 402 -~a~~cV~~Ll~ll~~~~---~-~v~e~i~vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~ 470 (746)
T PTZ00429 402 -VAPDCANLLLQIVDRRP---E-LLPQVVTAAKDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYC 470 (746)
T ss_pred -HHHHHHHHHHHHhcCCc---h-hHHHHHHHHHHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence 44556666666665543 2 22245777777766555321 344444332 1256789999999999999
Q ss_pred HHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch
Q 002921 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL 514 (865)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~ 514 (865)
+.+.. ...++..++..+.+.++.||.....+...+.-..+...
T Consensus 471 ~~I~~----------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~ 513 (746)
T PTZ00429 471 DFIEN----------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM 513 (746)
T ss_pred hhHhh----------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 87642 23455556677777788999988888877765544333
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=4.2e-10 Score=125.75 Aligned_cols=431 Identities=12% Similarity=0.063 Sum_probs=275.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHh-cCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhh
Q 002921 22 EQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (865)
Q Consensus 22 ~~~~s~~~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~ 100 (865)
..+.+.+.. .|+.|-+.+-.+. ..-+......+++..-.+.+.+.|.+.-+.+.+... ..++..-...+.+.+
T Consensus 39 ~~L~s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalLaINtl~K 112 (746)
T PTZ00429 39 NDLNGTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALLAVNTFLQ 112 (746)
T ss_pred HHHHCCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHHHHHHHHH
Confidence 334466666 7777777666543 222332222333221126789999999988866532 345554455678888
Q ss_pred hhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhh
Q 002921 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (865)
Q Consensus 101 ~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (865)
-+.++++.+|-.+...++. ...+...+.+++.+.+++.+.++.+|..|+.++..+....++.... ..
T Consensus 113 Dl~d~Np~IRaLALRtLs~---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~----------~~ 179 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMC---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ----------QD 179 (746)
T ss_pred HcCCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc----------cc
Confidence 8899999999886555554 4345567788899999999999999999999999998766543221 35
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH
Q 002921 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (865)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 260 (865)
+.+.+.+++.|+++.|...|+.+|..+.+..|..+ ......+..++..+.+-++=.+...+++| +...|.. ....
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~-~~e~ 254 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSD-KESA 254 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCC-cHHH
Confidence 67788888999999999999999999987655433 23334455555555443333333344444 3333321 1234
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCC
Q 002921 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (865)
Q Consensus 261 ~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (865)
..++..+...+++.+..|...|+.++..+.... ....++..+..+-+.++..+. .+
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~---------------------- 310 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RD---------------------- 310 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CC----------------------
Confidence 567777777788888899999999888775431 122233333333232222211 00
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002921 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (865)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (865)
-++|..+...+..+....+..+.+. +..+.-..+++ ..+|...+.+|..++
T Consensus 311 ------------------------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp----~yIK~~KLeIL~~La 361 (746)
T PTZ00429 311 ------------------------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDP----PFVKLEKLRLLLKLV 361 (746)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCc----HHHHHHHHHHHHHHc
Confidence 1267788888888887776544332 33333334444 357888899888887
Q ss_pred hchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHH
Q 002921 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (865)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 500 (865)
.. .....++.-+.....+.+..++..+..++|+++..++ .....++..++..+.+... +...++
T Consensus 362 ne------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---------~~a~~cV~~Ll~ll~~~~~-~v~e~i 425 (746)
T PTZ00429 362 TP------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD---------SVAPDCANLLLQIVDRRPE-LLPQVV 425 (746)
T ss_pred Cc------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcCCch-hHHHHH
Confidence 52 3445667777777788889999999999999997653 3456778888888876543 334577
Q ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHh--ccc-chhhHHHHHHHHHHHHHHh
Q 002921 501 SAFATLEEEAAEELAPRLEIILQHLMMAF--GKY-QRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 501 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l--~~~-~~~~~~~~~~~l~~l~~~~ 551 (865)
..+..+++..++. + ++..+...+ ... +...+...++.+|..+...
T Consensus 426 ~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 426 TAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 7888887765432 1 344444433 222 2244556788888776654
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.4e-08 Score=113.15 Aligned_cols=703 Identities=15% Similarity=0.139 Sum_probs=379.9
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc------------HHHHHHhhhcccCCCHHHHHHHHH
Q 002921 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDF------------NNYLAFILARAEGKSVEIRQAAGL 73 (865)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~------------~~~l~~il~~~~~~~~~~R~~a~~ 73 (865)
+|+ -....+.+..++.-+.++.+- +|++|...+..+-++|-| ..+++..+.. ..-+..-+....
T Consensus 130 aW~-~~~t~~~~~~il~~~~h~~pk-vRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~--~~~~a~~t~v~~ 205 (1176)
T KOG1248|consen 130 AWS-YSSTKTELFGILAFAAHKKPK-VRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIES--KLGSAENTTVLR 205 (1176)
T ss_pred hhc-cccHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHh--hhchHHHHHHHH
Confidence 577 555667788888888888888 999999999997765533 1233333332 111111111111
Q ss_pred HHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhh----ccC-Chh--
Q 002921 74 LLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL----DSN-DIN-- 146 (865)
Q Consensus 74 ~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l----~~~-~~~-- 146 (865)
.| ..++......+....+.+-+.++..++..+..++..+-+++..++...+...-.++...++..+ -+. |+.
T Consensus 206 ~L-~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t 284 (1176)
T KOG1248|consen 206 SL-MLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLT 284 (1176)
T ss_pred HH-HHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHH
Confidence 11 1223333335667777777888888889999999999999999998865533333433444433 333 221
Q ss_pred -----HHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHH
Q 002921 147 -----HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (865)
Q Consensus 147 -----~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 221 (865)
+...|..++...=.... -+..+.+++.++.++.+...++-..|-+++..+.+..+. ..+.
T Consensus 285 ~~W~~v~~~~~~~la~~q~~~~-----------~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~----~~~~ 349 (1176)
T KOG1248|consen 285 VAWLKVLNEAHDILATLQEEKA-----------LQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT----VIDA 349 (1176)
T ss_pred HHHHHHHHHHHHHHHHhCHHHH-----------HHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc----ccHH
Confidence 12222222222211111 134577888888888888889999999999998876433 1111
Q ss_pred HHHH-HHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002921 222 YLQG-LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (865)
Q Consensus 222 ~l~~-l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (865)
+-.. +..+++-.-..+-..+++++..+.+.+++...+++...++.+.....+++..-+...=+++++.+.+- .++
T Consensus 350 ~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~Am-GPe--- 425 (1176)
T KOG1248|consen 350 LCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAM-GPE--- 425 (1176)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhh-CHH---
Confidence 1111 22233333345667788999999999998888888877776655444433322222223343333320 111
Q ss_pred hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 002921 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (865)
Q Consensus 301 ~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (865)
.+-+++|.-+ .. ++.+. .|.
T Consensus 426 -~vL~~lpLnl-----~~--------------------------------------~s~~~-----~Rs----------- 445 (1176)
T KOG1248|consen 426 -RVLTILPLNL-----HA--------------------------------------ESLSF-----TRS----------- 445 (1176)
T ss_pred -HHHHHcchhc-----cc--------------------------------------ccccc-----chh-----------
Confidence 1112222110 00 00111 121
Q ss_pred hhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC-CChH-HHHHHH-HHH
Q 002921 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPL-IRSISC-WTL 457 (865)
Q Consensus 381 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~-vr~~a~-~~l 457 (865)
-++|.+..++.... |+- +.+.+.|...++...... ++. .++. +-.+.+ ...
T Consensus 446 --------WLLPvLR~~i~~A~-------------La~----F~~~ivpla~sl~~K~~~-l~~~~~~~~~~~tl~~QLW 499 (1176)
T KOG1248|consen 446 --------WLLPVLRDYIIGAS-------------LAF----FTEYIVPLAMSLQLKAKK-LKEAGSQVSLYDTLVDQLW 499 (1176)
T ss_pred --------HhHHHHHHhhccCc-------------HHH----HHHHHHHHHHHHHHHHHh-hhhccCcHHHHHHHHHHHH
Confidence 23445544444333 000 011111221111111111 111 1111 222222 222
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh---------ccchhhhHHHHHHHHHHH
Q 002921 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA---------AEELAPRLEIILQHLMMA 528 (865)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~---------~~~~~~~~~~i~~~l~~~ 528 (865)
+-+-.+|. .|.+....+..+.+.+...+.-. +..|...|.+|..+++.. .+.+..|..++++.+++.
T Consensus 500 ~LLP~FC~---~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ 575 (1176)
T KOG1248|consen 500 SLLPGFCN---YPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNV 575 (1176)
T ss_pred HhChhhhC---CCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Confidence 22222221 12233444666666666666653 588999999999888764 133566777888888888
Q ss_pred hcccchhh------HHHHHHHHH-HHHHHhcccCCchhhHhhhhHHHHHHHhcCC-CCCcch-----hhHHHHHHHHHHH
Q 002921 529 FGKYQRRN------LRIVYDAIG-TLADAVGFELNQPVYLDILMPPLIAKWQQLP-NSDKDL-----FPLLECFTSIAQA 595 (865)
Q Consensus 529 l~~~~~~~------~~~~~~~l~-~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~-----~~~~~~l~~l~~~ 595 (865)
-....... +...+..+. ......+. .+...+.+...... +.+..+ ..++..+..++.+
T Consensus 576 ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~---------dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~ 646 (1176)
T KOG1248|consen 576 YTQTVAAGRKILASRSTVLEIIRVDYFTVTPT---------DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPV 646 (1176)
T ss_pred hcCCCccccccHHHHHHHHHHHHHHHhhcccH---------HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhcc
Confidence 76554322 222233322 12222222 12222222222211 011011 1223333333322
Q ss_pred hccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhccc--chHHHHHHHHhc
Q 002921 596 LGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ--SNLRDMLLQCCM 673 (865)
Q Consensus 596 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~ 673 (865)
.... +...++ .+.....+. .+..+...+.+++..+... .....++.+ ..++..+...++
T Consensus 647 ~~e~---~vs~l~-~v~~~~e~~-------------~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 647 QTES---QVSKLF-TVDPEFENS-------------SSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred ccch---hHHHHH-HhhHHhhcc-------------ccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHh
Confidence 2221 111111 111111110 0234555677777777765 212222222 347778888888
Q ss_pred CCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH--Hhccccc-cchHHHH
Q 002921 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA--VKARQEI-SPIVMTV 750 (865)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~--~~~~~~~-~~~~~~i 750 (865)
+.....+...+.++..+.+..+..+..+++..++.+.=.+++. +...|++|..+|-.+. ....... .| ...+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~----n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ 782 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEV----NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAI 782 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccc----cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHH
Confidence 8888899999999999999998788888888888887777665 7788999988887776 3322111 12 2334
Q ss_pred HHHHHHHhcCch--hhhhhHHHHHHHHHHhhhhhCCCcc-cccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCch
Q 002921 751 VLCLVPILKHSE--ELNKSLIENSAITLGRLAWVCPELV-SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 751 l~~l~~~l~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
++..+.++.... + ...++-..+.+++.+.....+.+ .+++++++...+..|.. +..+.++.|+.++..+++..|.
T Consensus 783 lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGD-STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCH
Confidence 444444443321 1 11122222566777776444433 35678888888888876 3567899999999999999997
Q ss_pred hh-HhhHHHHHHHhhccCCCcc------HHHHHHHHH
Q 002921 828 GA-LSSLVFMCRAIASWHVRIT------LHLILLSVI 857 (865)
Q Consensus 828 ~~-~~~l~~~~~~~~~~~~~~~------~~~~~~~~~ 857 (865)
.+ .++++.++..+..++++.. ++..+..|+
T Consensus 861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 65 5889999999999999865 555555554
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.5e-09 Score=112.71 Aligned_cols=622 Identities=13% Similarity=0.137 Sum_probs=344.5
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhc--CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcC--CHh
Q 002921 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM--SPS 89 (865)
Q Consensus 15 ~~~~~~l~~~-~s~~~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~--~~~ 89 (865)
+++-..+-.+ .+.... +.++--+.|--+.+ .|+-|+.|+.-+.+.-+..+-.-..+.....+.+-|+|+.. +++
T Consensus 87 e~ikslIv~lMl~s~~~-iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda 165 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFN-IQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA 165 (960)
T ss_pred HHHHHHHHHHHhcCcHH-HHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 4444444444 344444 67777777766654 68888877766554322222222234444445566777642 223
Q ss_pred HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhcc--CCh---hHHhHHHHHHHHHHhhchh
Q 002921 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDI---NHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~--~~~---~~r~~al~~L~~l~~~~~~ 164 (865)
.-..||-.|- .+..+ ..+++....+.++. ++. +...+.+..+..+...+.
T Consensus 166 L~~EIK~vLd-~f~~P-----------------------lt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn- 220 (960)
T KOG1992|consen 166 LWLEIKLVLD-RFAEP-----------------------LTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLN- 220 (960)
T ss_pred HHHHHHHHHH-hhHhH-----------------------HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhh-
Confidence 3333332221 11111 11222222222211 111 112223333333332222
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcCC---------C----HHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhC
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQSP---------H----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~---------~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (865)
.++.++.|+.+++..++.+.+.++-. + ..+|...|+.+.-++...++++.+.++.++.....++.
T Consensus 221 --~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~ 298 (960)
T KOG1992|consen 221 --FQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLV 298 (960)
T ss_pred --cccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 12333445667889999999988731 1 25788899999999988888888888888887777664
Q ss_pred C--CCH---HHHHHHHHHHHHHHhh--chhhhh--hhHHHHHH-----------------------HHhhhcCCCCHH-H
Q 002921 232 D--PSA---EVRKLVCAAFNLLIEV--RPSFLE--PHLRNLFE-----------------------YMLQVNKDTDDD-V 278 (865)
Q Consensus 232 ~--~~~---~~r~~~~~~l~~l~~~--~~~~~~--~~l~~l~~-----------------------~l~~~~~~~~~~-v 278 (865)
+ +++ .....|++.|..+++. +.+.+. ..+.++.+ ++.+.+...|-+ -
T Consensus 299 ~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTR 378 (960)
T KOG1992|consen 299 STSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTR 378 (960)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchh
Confidence 3 222 2334556666666542 222221 12222222 223333333333 3
Q ss_pred HHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCC
Q 002921 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (865)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 358 (865)
|+.|++++..+++. ....+.+.+...+..++.....
T Consensus 379 RR~a~dlvrgL~~~--fe~~vt~v~~~~v~~~l~~y~~------------------------------------------ 414 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKN--FEGQVTGVFSSEVQRLLDQYSK------------------------------------------ 414 (960)
T ss_pred HHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 56788888888877 3444555555555544421111
Q ss_pred ccccccccHHHHHHHHHHHHHhhhCc------------chhhhhHHHHHHhhccCC-CcchhHHHHHHHHHHHHHhchhh
Q 002921 359 DDIVNVWNLRKCSAAALDVLSNVFGD------------EILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIK 425 (865)
Q Consensus 359 ~d~~~~~~~r~~a~~~l~~l~~~~~~------------~~~~~~~~~l~~~l~~~~-~~~~~~r~~a~~~l~~l~~~~~~ 425 (865)
+.+.+|+-...+..++..++...+. .+...+...+...+.+++ ...+-.|.+++.-+...-...+
T Consensus 415 -nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~- 492 (960)
T KOG1992|consen 415 -NPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG- 492 (960)
T ss_pred -CCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC-
Confidence 1235687788888888888766421 122233334444445432 1224445554443332222222
Q ss_pred hhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhh----hhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002921 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (865)
Q Consensus 426 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~ 501 (865)
.+++-..+|.+...+..+...|-..|+.++.++-..... ...++...++...++..+++.++-+...--+..+.
T Consensus 493 --~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK 570 (960)
T KOG1992|consen 493 --KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK 570 (960)
T ss_pred --hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence 356777899999999999999988888888876554332 11233456777888888888887664444556677
Q ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhcc----cchhhH-HHHHHHHHHHHHHhcccCC--chhhHhhhhHHHHHHHhc
Q 002921 502 AFATLEEEAAEELAPRLEIILQHLMMAFGK----YQRRNL-RIVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 502 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~----~~~~~~-~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~l~~ 574 (865)
++..++....+...|+.+.++..|...+.. ++.+.. ...+++++.+....++.-- -+.+...++|.+...+.+
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 787788777888889988888888777643 333333 3678999988886665420 014667777777766654
Q ss_pred CCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhh
Q 002921 575 LPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS 653 (865)
Q Consensus 575 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~ 653 (865)
+-.+. ..++..++.++...+....+..-++++.+ -+..-+...+ -+-....++..+++.-..
T Consensus 651 ---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~l----Lsp~lW~r~g----------NipalvrLl~aflk~g~~ 713 (960)
T KOG1992|consen 651 ---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPL----LSPNLWKRSG----------NIPALVRLLQAFLKTGSQ 713 (960)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHh----cCHHHHhhcC----------CcHHHHHHHHHHHhcCch
Confidence 11222 56777788877766653333333444433 2222111111 111233444444443222
Q ss_pred hhh--hhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 002921 654 GIE--SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACW 730 (865)
Q Consensus 654 ~~~--~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~ 730 (865)
.+. ..++. ++.++-+.+.+...+ ..++.++..++.+++ ..+.||+..+...++..++.++. +..-...+.
T Consensus 714 ~~~~~~~l~~--iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT---~kf~k~~~v 786 (960)
T KOG1992|consen 714 IVEAADKLSG--ILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKT---EKFVKSFIV 786 (960)
T ss_pred hhcccccchh--HHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCc---HHHHHHHHH
Confidence 222 22333 666666665443333 357888999998887 55789999999999999999863 333333444
Q ss_pred HHHHHH
Q 002921 731 AIGELA 736 (865)
Q Consensus 731 ~l~~l~ 736 (865)
.++...
T Consensus 787 F~~~~~ 792 (960)
T KOG1992|consen 787 FFSLFT 792 (960)
T ss_pred HHHHHH
Confidence 444443
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.55 E-value=2.3e-11 Score=133.77 Aligned_cols=567 Identities=16% Similarity=0.147 Sum_probs=367.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCCh-HHHHHHHHHhh
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-LELLQALVTCL 140 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w-~~ll~~l~~~l 140 (865)
..+..-|..++..+++.-....... .+-.+.+.+-+.. +....++..++.-++.+....+...+ ..+++.+...+
T Consensus 93 ~~di~~r~~~~~~l~~~a~~~~~~~---tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 93 NTDIQLRLNSGRKLSNLALALGVER---TRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLA 168 (759)
T ss_pred chhhhhhhhhhccccchhhhcccch---hhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhh
Confidence 3445555555555544332221111 1333334444444 56777888888888888877643333 45677777777
Q ss_pred ccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc-HHhHHhH
Q 002921 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSM 219 (865)
Q Consensus 141 ~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~ 219 (865)
......+|+.++..+..+....+.... ...+.|.+.+...+.--..|..++..++......+ +.+...+
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~----------~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKL----------REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHH----------HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 777888999999999888887765321 25556655555544323467788888888776655 3444433
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhH
Q 002921 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (865)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (865)
.+..-++.++..+.+|..+..-+..++...+.. .....+++...+...|..+.||..|++.+..+...-....
T Consensus 239 ---r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~--~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-- 311 (759)
T KOG0211|consen 239 ---RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE--IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-- 311 (759)
T ss_pred ---HHHHHhhccccchhhHHHHHhhhHHHHHHHHHH--HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--
Confidence 344445567778999999999888888766652 2234555666667777788899999988777755411110
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
+....+.+.++.. .++..|.+|......+..+.
T Consensus 312 -d~~~~~~~~l~~~----------------------------------------------~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 312 -DVVKSLTESLVQA----------------------------------------------VEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred -hhhhhhhHHHHHH----------------------------------------------hcChhHHHHHHHhhhhhhHH
Confidence 1112222222110 01156889999999999999
Q ss_pred hhhCcc-hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhh--hccHHHHHHHHHhccCCCChHHHHHHHHH
Q 002921 380 NVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (865)
Q Consensus 380 ~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (865)
..+|.. ..+...+.....+++.. |..|.+...-...++....... .-....++|.+.....|.++.||.+.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~---~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~ 421 (759)
T KOG0211|consen 345 SAVGPSATRTQLVPPVSNLLKDEE---WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASV 421 (759)
T ss_pred HHhccccCcccchhhHHHHhcchh---hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcc
Confidence 998763 34566777778888888 9999988877777766544222 22334478888889999999999998765
Q ss_pred HHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccchh
Q 002921 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRR 535 (865)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~ 535 (865)
...+...++ ....+..+.+.++..++|..+.||......+..+-... ......+.+..++.+...-....+.
T Consensus 422 ~~~~~p~~~-------k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 422 ITGLSPILP-------KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred ccccCccCC-------cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHH
Confidence 554444332 34556677888888899999999998776664433322 2334445666777766666666677
Q ss_pred hHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 002921 536 NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINI 614 (865)
Q Consensus 536 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 614 (865)
++..+++.+-.++...|..|.++.|...++..+-+ ....+ ..+..++..++..+|... +...+++.++..
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d-------~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~ 565 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPD-------HVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAM 565 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhh-------hHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHH
Confidence 78888999999988888665544333322222111 11222 456777888888888432 244555555433
Q ss_pred HHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 002921 615 IQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (865)
Q Consensus 615 l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 694 (865)
..+ +..-+|.+.+..+..++..+|..+.. ..++|.+.....|..++||-.++..+..+.+..
T Consensus 566 ~~q--------------~~y~~R~t~l~si~~la~v~g~ei~~----~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 566 DLQ--------------DNYLVRMTTLFSIHELAEVLGQEITC----EDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred hcC--------------cccchhhHHHHHHHHHHHHhccHHHH----HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 221 12456778899999999999987643 248999999999999999999999999998876
Q ss_pred hhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002921 695 PVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (865)
Q Consensus 695 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 739 (865)
..... -..+.|.+.....+. +.++|-.|..+.+.+....
T Consensus 628 ~~~~~--~~~v~pll~~L~~d~----~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 628 DESVR--DEEVLPLLETLSSDQ----ELDVRYRAILAFGSIELSR 666 (759)
T ss_pred chHHH--HHHHHHHHHHhccCc----ccchhHHHHHHHHHHHHHH
Confidence 53221 123445554444455 6688888888888776543
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-09 Score=119.96 Aligned_cols=533 Identities=15% Similarity=0.118 Sum_probs=301.0
Q ss_pred hHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcc
Q 002921 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
+..+.+.+.|+.++++.+..||.++|..++.++...+..--.+.+..+...++-. +....|+|+.+|+.++..-- +
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--L- 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--L- 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--c-
Confidence 5667888999999999999999999999999999987444455666666644433 46788999999999987421 1
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcc-ccHHhHHhHHHHHHHHH-HhhCCCCHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLF-LLSNDPSAEV 237 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~--------~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~-~~~~~~~~~~ 237 (865)
+...++.++|.+.+.+.- ....||.+|+-....+... .|..+.+.+..+...++ ..+-|++-.+
T Consensus 414 ------lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 414 ------LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred ------chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 123467899999988853 3568999999999999865 45566666665665554 4566888999
Q ss_pred HHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhh-ccC
Q 002921 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN-MIY 316 (865)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~-l~~ 316 (865)
|++|..+|.+.+...+.. ||--.++... +.-.-..|.. ++..++.. ...+..|...++..+++. ++.
T Consensus 488 RRAAsAAlqE~VGR~~n~--p~Gi~Lis~~----dy~sV~~rsN---cy~~l~~~---ia~~~~y~~~~f~~L~t~Kv~H 555 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNF--PHGISLISTI----DYFSVTNRSN---CYLDLCVS---IAEFSGYREPVFNHLLTKKVCH 555 (1133)
T ss_pred hHHHHHHHHHHhccCCCC--CCchhhhhhc----chhhhhhhhh---HHHHHhHH---HHhhhhHHHHHHHHHHhccccc
Confidence 999999999998876655 3333343321 0000001222 22222221 122233334444444321 221
Q ss_pred ChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHH
Q 002921 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA 396 (865)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 396 (865)
|+ -.+|..+..+|..++...++......+|-+..
T Consensus 556 -------Wd---------------------------------------~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld 589 (1133)
T KOG1943|consen 556 -------WD---------------------------------------VKIRELAAYALHKLSLTEPKYLADYVLPPLLD 589 (1133)
T ss_pred -------cc---------------------------------------HHHHHHHHHHHHHHHHhhHHhhcccchhhhhh
Confidence 10 03788899999999999988877777777777
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHhchhhhh--hccH--------HHHHHHHHhccCCCC--hHHHHHHHHHHHhhHHHH
Q 002921 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPHL--------SEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 397 ~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~l--------~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~ 464 (865)
...+.+ ...|+++..+.|.+..++...- ..++ +.+++.+...--++. ...|.+.+..+.++...-
T Consensus 590 ~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 590 STLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred hhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 777777 8999999999998887665311 1111 112222222111211 344555444444433221
Q ss_pred hhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch-hhHHHHHHH
Q 002921 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDA 543 (865)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~ 543 (865)
... ...-..+..-..+.+.+.+++ .+|..|.++++.++......-.....+++...+..+.+... ..+....-+
T Consensus 667 ~~~----~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~la 741 (1133)
T KOG1943|consen 667 DRL----FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILA 741 (1133)
T ss_pred chh----HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 100 001111222223333344555 79999999999998764211111112566666666666533 333333333
Q ss_pred HHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHH
Q 002921 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLA 621 (865)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~ 621 (865)
++.+-. ....-++-+.+...+++...+ +...+ ....+..+..++..++. .+..-..+++..+++.+.+....
T Consensus 742 l~~lp~----~~i~~~~q~~lc~~~l~~~p~--d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd 815 (1133)
T KOG1943|consen 742 LGVLPS----ELIHRHLQEKLCKLVLELLPS--DAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTD 815 (1133)
T ss_pred HccCcH----HhhchHHHHHHHHHHhccCcc--cccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccc
Confidence 332211 100002333333333322211 10111 13456667777777763 45566778888888888765321
Q ss_pred hhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhch-hh
Q 002921 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM---DDASDVRQSAFALLGDLARVCP-VH 697 (865)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~vr~~a~~~l~~l~~~~~-~~ 697 (865)
.. +| -..-+|+.|+.++..+..-+.+ .++++.+.+-+.+...++ +.....|..|+.++..+...-+ -.
T Consensus 816 ~r-GD-----VGswVReaAm~al~~~~~~l~~--p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~ 887 (1133)
T KOG1943|consen 816 SR-GD-----VGSWVREAAMKALSSLLDTLSS--PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIP 887 (1133)
T ss_pred cC-cc-----HHHHHHHHHHHHHHhhhhhhcC--cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCC
Confidence 00 00 0123677888888888776554 234433223333333333 3344457788888887777621 12
Q ss_pred hHhhHHHHHHHHH
Q 002921 698 LQARLSDFLDIAA 710 (865)
Q Consensus 698 ~~~~~~~~l~~l~ 710 (865)
..||.+.+..++-
T Consensus 888 ~~~~~~~L~ei~~ 900 (1133)
T KOG1943|consen 888 HFRHIEKLEEIFP 900 (1133)
T ss_pred cchHHHHHHhhcC
Confidence 2355554444443
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=9.8e-12 Score=128.58 Aligned_cols=358 Identities=16% Similarity=0.139 Sum_probs=248.0
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-----CChHHHHHHHHHhhc-cCChhHHhHHHHHHHHHHhhchhhccc
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-----~~w~~ll~~l~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
-+.+++.+.+.+...+..+.+.+..+...+.. ..+...+|.+.+++. +.++..+..|.-+|..++..-.++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34555666666666677777777777666521 123457888999886 456899999999999999877664322
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSA-EVRKLVCAAF 245 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~-~~r~~~~~~l 245 (865)
- .-...+|.+.+++.+++..|+..|..+|++++...|. +.+++ ...++.++..+..+.. ...+.+.-+|
T Consensus 148 v-------v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 148 V-------VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred c-------ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 1 1256788999999999999999999999999876432 22221 1235555555554433 5666788888
Q ss_pred HHHHhhc-hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhh
Q 002921 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~ 324 (865)
..+++.. |.---..+..++|.+...+.+.|++|...|+-+++.+.... .+.+. .
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~--ne~iq--------~--------------- 274 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS--NEKIQ--------M--------------- 274 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHHHH--------H---------------
Confidence 8888765 32222456677888888888888888777776665554431 00000 0
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCc
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 404 (865)
. +-..+.|.+...+.+.+
T Consensus 275 -------------------------------------------------v-----------i~~gvv~~LV~lL~~~~-- 292 (514)
T KOG0166|consen 275 -------------------------------------------------V-----------IDAGVVPRLVDLLGHSS-- 292 (514)
T ss_pred -------------------------------------------------H-----------HHccchHHHHHHHcCCC--
Confidence 0 00134556666677777
Q ss_pred chhHHHHHHHHHHHHHhchhhhhhccHHH-HHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH
Q 002921 405 AWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (865)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (865)
...+-.|+.++|.++.+........++. .+|.+...+. ++...+|..|||++++++..-+.. ...-.-..+++
T Consensus 293 -~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q----iqaVida~l~p 367 (514)
T KOG0166|consen 293 -PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ----IQAVIDANLIP 367 (514)
T ss_pred -cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH----HHHHHHcccHH
Confidence 7788889999999888877654433332 6777778877 666779999999999998764432 12223457899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
.|+..++..+.++|..|++++++++......-..|+- .+++.+..+|.-.+.+....+++++..+.+..+
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999998876555555543 478888888866666777788888888876543
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.45 E-value=3.5e-07 Score=99.04 Aligned_cols=696 Identities=13% Similarity=0.115 Sum_probs=352.2
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhC--CChhHHHHHHHHHHHHHHhcCcC----
Q 002921 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIA---- 127 (865)
Q Consensus 54 ~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~~~~---- 127 (865)
...|..--+.++++|..|...| +.|+. ++. ....|.+...+ .+-..|..+...+.....+.+..
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l-----~qle~-~~~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~ 76 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQL-----KQLEL-TEG----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEA 76 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHH-----hcccc-chH----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhh
Confidence 3444322377899999999888 45653 222 44556665543 35567887776666666553211
Q ss_pred ---------ChHH-HHHHHHHhhccCChhHHhHHHHHHHHHHh-hchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHH
Q 002921 128 ---------GWLE-LLQALVTCLDSNDINHMEGAMDALSKICE-DIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (865)
Q Consensus 128 ---------~w~~-ll~~l~~~l~~~~~~~r~~al~~L~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 196 (865)
.-.. +...+.+.+.+++...|.++..++..++. ++++ .+++++|.+++.+.+++..-
T Consensus 77 fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd------------~WpElv~~i~~~l~~~n~n~ 144 (1005)
T KOG2274|consen 77 FRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD------------EWPELVPFILKLLSSGNENS 144 (1005)
T ss_pred ccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch------------hhHHHHHHHHHHHhccchhh
Confidence 1112 33456666666677777777777777765 3443 36999999999999988888
Q ss_pred HHHHHHHHHHHhcccc-HHhHHhHHHH---HHHHHHhhCCCCHHHHHHHH-----HHHHHHHhhchh----hhhhhHHHH
Q 002921 197 RKLSLGSVNQFIMLMP-SALFVSMDQY---LQGLFLLSNDPSAEVRKLVC-----AAFNLLIEVRPS----FLEPHLRNL 263 (865)
Q Consensus 197 r~~a~~~l~~~~~~~~-~~~~~~~~~~---l~~l~~~~~~~~~~~r~~~~-----~~l~~l~~~~~~----~~~~~l~~l 263 (865)
-..|+.+|..+..... .+.....+.. +..++..........|..+. .....++..+.+ ..+.++.++
T Consensus 145 i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 145 IHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI 224 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8899999988875432 1111111111 22333433333333333322 111222222222 222333334
Q ss_pred HHHHhhhcC-------CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCcc
Q 002921 264 FEYMLQVNK-------DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (865)
Q Consensus 264 ~~~l~~~~~-------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~ 336 (865)
++..+..+. ..+-..+...+.++..+.+. .+..+.+++...++...+.+...-.-
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~n--fp~~~~~~~~~~~~~vw~~~~~~~~~---------------- 286 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVEN--FPSLINPFMMGMFSIVWQTLEKILAV---------------- 286 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHh--hHHhhhHHHHhhhhHHHHHHHHHHhh----------------
Confidence 433333221 12334566677777777665 55555666655554432221110000
Q ss_pred CCCCcccccc--cCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh--Cc---chhhhhHHHHHHhhc----------
Q 002921 337 QDLKPRFHSS--RLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GD---EILPTLMPVIQAKLS---------- 399 (865)
Q Consensus 337 ~~i~~~~~~~--~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--~~---~~~~~~~~~l~~~l~---------- 399 (865)
|+|...... ...+.-+.+++.++ .-+.-....+++..+.... .. ..++.++..+..+++
T Consensus 287 -yir~~V~~~e~~~~~~~dsd~e~~~---~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~ 362 (1005)
T KOG2274|consen 287 -YVRESVNGTEDSYDARYDSDPEEKS---VETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWT 362 (1005)
T ss_pred -hhhhhccccccCcccccCCchhhhC---hHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHh
Confidence 011000000 00000000000000 0011122233333333222 01 112222222222221
Q ss_pred --------cCCCcchhHHHHHHHHHHHHHhchhh-hhhccHHHHHHH-----HHhccCCCC-hHHHHHHHHHHHhhHHHH
Q 002921 400 --------ASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAF-----LIPLLDDKF-PLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 400 --------~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~-----l~~~l~d~~-~~vr~~a~~~l~~l~~~~ 464 (865)
+.++ ....|..+...+-.+....+. .+.+.....-.. -...++.++ ..+..+..+........
T Consensus 363 sD~~~fV~dEd~-~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~- 440 (1005)
T KOG2274|consen 363 SDVNQFVADEDD-GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID- 440 (1005)
T ss_pred ccHHHhhccCCC-CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC-
Confidence 1111 134444444444444433331 111111111000 111122222 34455554444433311
Q ss_pred hhhhCCCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchh-hHHHHHH
Q 002921 465 VQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYD 542 (865)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~ 542 (865)
.....++..++..+...+.. ..|..-.++..+++.+.+... ...+.+..++...++.+.....+ .+..++.
T Consensus 441 ------~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~ 513 (1005)
T KOG2274|consen 441 ------DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAVR 513 (1005)
T ss_pred ------cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHHH
Confidence 11334444445455455543 356666688888887765421 22344556666666666654443 3334444
Q ss_pred HHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCC--CCcchhhHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHH
Q 002921 543 AIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN--SDKDLFPLLECFTSIAQALGAGFT-QFAQPVFQRCINIIQTQQ 619 (865)
Q Consensus 543 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~ 619 (865)
++... ++.+ .+..+.|.+++.+.+... .+..+.-++|+++.+++.= .+|. ..-..|.|..+.++....
T Consensus 514 ~~~~~---~~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s 584 (1005)
T KOG2274|consen 514 AFCGY---CKVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYS 584 (1005)
T ss_pred HHHhc---cCce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhc
Confidence 44433 3433 334444555555444321 1222356778887777533 3333 233456777776665542
Q ss_pred HHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhch
Q 002921 620 LAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA----SDVRQSAFALLGDLARVCP 695 (865)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~----~~vr~~a~~~l~~l~~~~~ 695 (865)
.|+.+...+-+++..+... .....++-. ..+|-+...+..+. .....-|+..|..++++.+
T Consensus 585 ------------~DP~V~~~~qd~f~el~q~-~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 585 ------------EDPQVASLAQDLFEELLQI-AANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred ------------CCchHHHHHHHHHHHHHHH-HHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 1444444455555554431 111222222 26666666665443 5667788999999999988
Q ss_pred hhhH-hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc-----cch--HHHHHHHHHHHhcCchhhhhh
Q 002921 696 VHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-----SPI--VMTVVLCLVPILKHSEELNKS 767 (865)
Q Consensus 696 ~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~--~~~il~~l~~~l~~~~~~~~~ 767 (865)
..+. ..+...+|.+.++.-.++ +-++-+++-.|+..++.+..+++ .|- +-.+++.+-.+| +++
T Consensus 650 ~pL~~~l~~~~FpaVak~tlHsd---D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLL-dp~----- 720 (1005)
T KOG2274|consen 650 SPLPNLLICYAFPAVAKITLHSD---DHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLL-DPE----- 720 (1005)
T ss_pred CCccHHHHHHHhHHhHhheeecC---ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHc-CCc-----
Confidence 6653 345667888888876654 45677899999999887754332 111 224455444333 332
Q ss_pred HHHHHHHHHHhhhh----hCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHH
Q 002921 768 LIENSAITLGRLAW----VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVF 835 (865)
Q Consensus 768 ~~~~~~~~l~~l~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 835 (865)
.-+.++..+|+++. ..+..+.|.+++++...++.+........-...+..+++++..++.++++.|.+
T Consensus 721 ~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 721 TSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred cchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 23444446666664 455667788999999999999887777777788888999998888776655544
No 47
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=9e-10 Score=121.49 Aligned_cols=569 Identities=15% Similarity=0.182 Sum_probs=348.2
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCC
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (865)
.++..+...+-.-|.....-+++++...+. -.--+++|++.+.+ +.+..+...+..-++.+....+. .
T Consensus 86 ~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~----------~ 154 (759)
T KOG0211|consen 86 VLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG----------P 154 (759)
T ss_pred HHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc----------h
Confidence 334444445555677777777777776532 23568999999999 55556666666666655554432 1
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch-h
Q 002921 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-S 254 (865)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~ 254 (865)
.+...+.+.+..++.+....+|..++.++...+...+.... ...+.+.+..+..+.-...|..+|..+.......+ +
T Consensus 155 ~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~ 232 (759)
T KOG0211|consen 155 EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL--REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDD 232 (759)
T ss_pred hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChH
Confidence 34466778888888888889999999999999887765433 33344555444444223455667777776665555 3
Q ss_pred hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002921 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (865)
Q Consensus 255 ~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (865)
.++ ..+.+...+..++..+.+|..+.+-+..++.. ..+. ..-..+++....
T Consensus 233 ~vk---~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~--~~~~--~~~s~v~~~~~~---------------------- 283 (759)
T KOG0211|consen 233 AVK---RELRPIVQSLCQDDTPMVRRAVASNLGNIAKV--LESE--IVKSEVLPTLIQ---------------------- 283 (759)
T ss_pred HHH---HHHHHHHHhhccccchhhHHHHHhhhHHHHHH--HHHH--HHHhhccHHHhh----------------------
Confidence 333 34555566677888888888877766666544 1110 000011111100
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc--chhhhhHHHHHHhhccCCCcchhHHHHH
Q 002921 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKLSASGDEAWKDREAA 412 (865)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~r~~a 412 (865)
...||.| ++|.+|...+..+...+.. .....+.+.+.+..++++ |+.|+..
T Consensus 284 -------------------L~~Ddqd-----sVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~---~~v~~~~ 336 (759)
T KOG0211|consen 284 -------------------LLRDDQD-----SVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGS---WRVSYMV 336 (759)
T ss_pred -------------------hhhcchh-----hHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChh---HHHHHHH
Confidence 0001111 4899999999999998853 566677788888888888 9999998
Q ss_pred HHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCC
Q 002921 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN 492 (865)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ 492 (865)
......+....+.. ..-....+.....++|....+|.++..-...++...... ....-....+++.+.....|++
T Consensus 337 ~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~---~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 337 ADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS---CYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred hhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc---cccccchhhhhHHHHHHHhccc
Confidence 88888777766642 222345677778899999999999887777777765411 0111223455778878888989
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH---HhcccCCchhhHhhhhHHHH
Q 002921 493 KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGFELNQPVYLDILMPPLI 569 (865)
Q Consensus 493 ~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~l~~~l~ 569 (865)
.+||.+.+.....+....+ ...-++.+.+.+...+++....++....+.+..+-. ..|.. -+.+..+|.+.
T Consensus 412 ~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~----~~s~slLp~i~ 485 (759)
T KOG0211|consen 412 LHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIS----TVSNSLLPAIV 485 (759)
T ss_pred chHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccch----hhhhhhhhhhh
Confidence 9999876665544433332 111223344444555556555666655544433322 22222 34566666555
Q ss_pred HHHhcCCCCCcchhhHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHH
Q 002921 570 AKWQQLPNSDKDLFPLLECFTSIAQALGAGF-TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (865)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~ 648 (865)
+.-... .-+...++++.+-.++...|..| .+. .-+.+...+.+ -..++++++...+..++
T Consensus 486 el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~---~~~l~~~~l~d--------------~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 486 ELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEK---LAELLRTWLPD--------------HVYSIREAAARNLPALV 546 (759)
T ss_pred hhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHH---HHHHHHhhhhh--------------hHHHHHHHHHHHhHHHH
Confidence 433211 11122466777777777776432 121 11111111111 13467888888999999
Q ss_pred HHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 002921 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (865)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a 728 (865)
..+|..-.- ..+.|.++....+++.-+|...+.++..++..+|..+. ...++|.+.....+. ..+||-++
T Consensus 547 ~~~G~~w~~----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~----vanVR~nv 616 (759)
T KOG0211|consen 547 ETFGSEWAR----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDP----VANVRINV 616 (759)
T ss_pred HHhCcchhH----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCC----chhhhhhH
Confidence 988843221 13666666666666889999999999999998886553 456788888877777 77999999
Q ss_pred HHHHHHHHHhccccc-cchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhh
Q 002921 729 CWAIGELAVKARQEI-SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (865)
Q Consensus 729 ~~~l~~l~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (865)
+..+-.+........ ..++.+++. .+..++ ..+++..+..+++.+.
T Consensus 617 ak~L~~i~~~L~~~~~~~~v~pll~---~L~~d~---~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 617 AKHLPKILKLLDESVRDEEVLPLLE---TLSSDQ---ELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH---HhccCc---ccchhHHHHHHHHHHH
Confidence 999999887665322 223333333 333344 2556666655554443
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=1.5e-09 Score=118.77 Aligned_cols=398 Identities=16% Similarity=0.138 Sum_probs=262.2
Q ss_pred HhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCc
Q 002921 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (865)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (865)
++..|.+.+...-..++.++..+.....+ ...+.+.+.+...+.++++.+|..++..++.+.+.-...... .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~------ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-L------ 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-h------
Confidence 77778776666667788888888876533 346889999999999999999999999998887765432110 0
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh
Q 002921 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 255 (865)
.-+.+++.+..++.+++..|...|.+++..+....+ .+...+ +..+..+...+..+++.+|..+++++..++...++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 116789999999999999999999999999987532 221111 122556666666667789999999999999888777
Q ss_pred hhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002921 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (865)
Q Consensus 256 ~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (865)
+..... .+++.++..+.++|.-++..+++.+..+++.+...+.+.. ..+++.+...+....+|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 643332 4888888888888878899999999999886433333221 245666655444332210
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHH-HHHHHHHHHHHhhhCcc---hhhhhHHHHHHhhccCCCcchhHHH
Q 002921 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR-KCSAAALDVLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDRE 410 (865)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r-~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~r~ 410 (865)
+ .. .+. .....+++.++...+.. .+|.++..+.+++.+.+ ...+.
T Consensus 260 -------------------------~-~~--~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 -------------------------R-LS--SLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred -------------------------c-cc--chhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 0 00 111 12336777777764443 34667777777778888 89999
Q ss_pred HHHHHHHHHHhchh--hhh----hccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHH---
Q 002921 411 AAVLALGAIAEGCI--KGL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL--- 481 (865)
Q Consensus 411 ~a~~~l~~l~~~~~--~~~----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~--- 481 (865)
.|+.++|.++.... ..+ .+.+..++..+..........+|.+++.+++.+.....+. .+.......+..+
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 99999999986443 112 2345567777777778888899999999999886432210 0000001111111
Q ss_pred -----H-HHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Q 002921 482 -----M-GLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (865)
Q Consensus 482 -----~-~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (865)
. .++..++.|-+.+|.++...+..++..- +-...--.+.+++.+++.-.+.+...+..=++++..+++.
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 4556667778999999999999888642 2111223355666665544443333444445555555543
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.39 E-value=1.4e-10 Score=136.50 Aligned_cols=273 Identities=21% Similarity=0.206 Sum_probs=193.0
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCC
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (865)
+.|+..|.++++.||..++..++.+.. ++.++.|.+.+.++++.+|..|+..|..+.+..+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----------
Confidence 466677888999999999888887642 56788888889999999999999888777542211
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh
Q 002921 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 255 (865)
.+.+...|+++++.||..|+.+|..+-... ...+...+.|++..+|..++.+|..+-. .
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 235566778889999999999888764211 1134456788899999999988886521 1
Q ss_pred hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCc
Q 002921 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (865)
Q Consensus 256 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~ 335 (865)
+.+...+.|.+.+||..+...|..+.... .. .++.+...+..
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~--------~~~~L~~ll~D------------------- 786 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGG--AP--------AGDAVRALTGD------------------- 786 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhcccc--ch--------hHHHHHHHhcC-------------------
Confidence 12344678888999999998888775431 00 01222221111
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHH
Q 002921 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (865)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~ 415 (865)
.++.+|..|...|+.+... +.+.+.+...+.+++ |.+|.+|+.+
T Consensus 787 ---------------------------~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 787 ---------------------------PDPLVRAAALAALAELGCP------PDDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ---------------------------CCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 0134899999988665321 122345667788888 9999999999
Q ss_pred HHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHH
Q 002921 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (865)
Q Consensus 416 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~v 495 (865)
|+.+.. +..++.+.+.++|+++.||..|.++|+.+.. . ....+.+...++|++..|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~----~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG----------D----PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------C----HHHHHHHHHHHhCCCHHH
Confidence 987642 2245778889999999999999999998510 1 234566778889999999
Q ss_pred HHHHHHHHHH
Q 002921 496 QEAACSAFAT 505 (865)
Q Consensus 496 r~~a~~al~~ 505 (865)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999998863
No 50
>PRK09687 putative lyase; Provisional
Probab=99.34 E-value=3.5e-10 Score=112.70 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=179.4
Q ss_pred HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
++.|...+.+++..+|..+...|..+-. +.+++.+...++++++.+|..|+.+|+.+...-.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 4566777788999999999988865421 5677888888999999999999999999854210
Q ss_pred HHhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhc
Q 002921 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (865)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~ 291 (865)
.....++.|..+ ..++++.+|..++.+|+.+...... ..+.+++.+.....|.+..||..+...+..+..
T Consensus 87 -----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 -----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred -----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 022334555544 5788999999999999988543221 234455556666778899999999888865432
Q ss_pred cCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
. ..++.++..+.. .+|.+|..|
T Consensus 158 ~------------~ai~~L~~~L~d----------------------------------------------~~~~VR~~A 179 (280)
T PRK09687 158 E------------AAIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_pred H------------HHHHHHHHHhcC----------------------------------------------CCHHHHHHH
Confidence 1 223333333321 123489999
Q ss_pred HHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHH
Q 002921 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (865)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 451 (865)
...|+.+ ..+ -+...+.+...+++.+ |.+|..|+.+||.+.. +..+|.+++.+++++ +|.
T Consensus 180 ~~aLg~~--~~~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSN--KYD---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcC--CCC---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 9999887 111 2345666777788888 9999999999998643 357888889998876 677
Q ss_pred HHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 002921 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFA 504 (865)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~ 504 (865)
.++.++|++.. +..++.|...++ +++..|+..+..++.
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 78888887664 256777888776 678999999888765
No 51
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.3e-06 Score=94.00 Aligned_cols=264 Identities=14% Similarity=0.186 Sum_probs=172.0
Q ss_pred hhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH--hccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 002921 475 EQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (865)
.++..+. .+..... ..+..+|..+...|..++.. +......++..+.+.|.+.++......+...+.++..+.+.+
T Consensus 650 ~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~ 728 (1176)
T KOG1248|consen 650 SQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL 728 (1176)
T ss_pred hhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 3344444 3333333 34789999999999988876 334456788889999999999888888889999999999998
Q ss_pred cccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHH---HHhccccccchHHHHHHHHHHHHHHHHHhhccccc
Q 002921 552 GFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIA---QALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAA 628 (865)
Q Consensus 552 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 628 (865)
+.++. .+....+|.++=.....+ .......+.|+-.++ ...-..-.| ...+++..+..+.....
T Consensus 729 ~~e~~--~~i~k~I~EvIL~~Ke~n--~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~-------- 795 (1176)
T KOG1248|consen 729 SAEHC--DLIPKLIPEVILSLKEVN--VKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLV-------- 795 (1176)
T ss_pred cHHHH--HHHHHHHHHHHHhccccc--HHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhc--------
Confidence 85443 455555555443332211 111234555555554 222222223 23344444444443210
Q ss_pred CCCCCcchhHhhhhhhhHHHHHhhhhhh-hhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh-hhHhhHHHHH
Q 002921 629 GAQYDKEFVVCCLDLLSGLAEGLGSGIE-SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFL 706 (865)
Q Consensus 629 ~~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l 706 (865)
.+....+.+.+-+++.++...++... +++++ ++..+..++..++.+++.+|++.+..++..++. -+.+++++++
T Consensus 796 --gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~--li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL 871 (1176)
T KOG1248|consen 796 --GDSTRVVASDIVAITHILQEFKNILDDETLEK--LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELL 871 (1176)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH
Confidence 00122233335667777766555432 45555 888888889999999999999999999999985 4679999999
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHhcC
Q 002921 707 DIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKH 760 (865)
Q Consensus 707 ~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~ 760 (865)
|.+++.+.+- ...+|..+-..+..++...+ +.+.++++.....+++.+..
T Consensus 872 ~sll~ls~d~----k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 872 PSLLALSHDH----KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHHhh----hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 9999988776 56788888888899998877 44556665444445544443
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.9e-08 Score=103.03 Aligned_cols=476 Identities=17% Similarity=0.152 Sum_probs=303.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 002921 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (865)
Q Consensus 184 ~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l 263 (865)
.+.+.|.+.....+..|++-+-.++... ..+..+.+.+.......+.++++-+.--|...++..++..-- =
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G-----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----S 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG-----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----S 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----e
Confidence 4556677776677777777666655432 124555666666667778999999999999999988765211 1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccc
Q 002921 264 FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (865)
Q Consensus 264 ~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~ 343 (865)
+..+.+.+.|+++.+|..|+.++..+- ++.+.|+++......-.|
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------------vp~IaPI~llAIk~~~~D----------------------- 154 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------------VPMIAPIMLLAIKKAVTD----------------------- 154 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------------hhhHHHHHHHHHHHHhcC-----------------------
Confidence 334455788999999999999988761 123334433222211111
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhch
Q 002921 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (865)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 423 (865)
..-.+|+.|+.++-.+...-+++ -..+...+..++.+.+ ..+--+|++++..++-.-
T Consensus 155 -------------------~s~yVRk~AA~AIpKLYsLd~e~-k~qL~e~I~~LLaD~s---plVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 155 -------------------PSPYVRKTAAHAIPKLYSLDPEQ-KDQLEEVIKKLLADRS---PLVVGSAVMAFEEVCPER 211 (968)
T ss_pred -------------------CcHHHHHHHHHhhHHHhcCChhh-HHHHHHHHHHHhcCCC---CcchhHHHHHHHHhchhH
Confidence 11248999999998877665543 3378888889999988 889999999998887655
Q ss_pred hhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhh------------------------CCCcchhhHHH
Q 002921 424 IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI------------------------GHQNGREQFEK 479 (865)
Q Consensus 424 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------------~~~~~~~~~~~ 479 (865)
-+-+.+++.. +.+.+.|-+..=+...+.+|.+++++.-..- .|....+.+.-
T Consensus 212 ldLIHknyrk----lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 212 LDLIHKNYRK----LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred HHHhhHHHHH----HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 4545555444 4456666666666677788888877632110 00112345666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchh
Q 002921 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPV 559 (865)
Q Consensus 480 ~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (865)
+++..-.++.+.++.|..++|.++..++... -...|...|+.+|.+ +..++..+++.|..+......-|. |
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~--P 358 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE--P 358 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--h
Confidence 7777777888889999998888887665321 244567777777754 345667778888888876655554 5
Q ss_pred hHhhhhHHHHHHHhcCCCCCcch--hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh
Q 002921 560 YLDILMPPLIAKWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (865)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (865)
|+..+.= -. .|+.. .--++.++.++..- ....|++-+...+.+ .|.++.
T Consensus 359 ~lKsFfv-------~s--sDp~~vk~lKleiLs~La~es------ni~~ILrE~q~YI~s--------------~d~~fa 409 (968)
T KOG1060|consen 359 HLKSFFV-------RS--SDPTQVKILKLEILSNLANES------NISEILRELQTYIKS--------------SDRSFA 409 (968)
T ss_pred hhhceEe-------ec--CCHHHHHHHHHHHHHHHhhhc------cHHHHHHHHHHHHhc--------------CchhHH
Confidence 6554431 11 23322 12245566666532 122333322222221 144688
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCC
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK 717 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (865)
..+..++|..+...+.-.. ..+.-|...+++.+..|...++..|..++..-+.... +++..+.+.++...
T Consensus 410 a~aV~AiGrCA~~~~sv~~------tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~----~ii~~La~lldti~ 479 (968)
T KOG1060|consen 410 AAAVKAIGRCASRIGSVTD------TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL----EILFQLARLLDTIL 479 (968)
T ss_pred HHHHHHHHHHHHhhCchhh------HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH----HHHHHHHHHhhhhh
Confidence 8888888888877665221 3666666677778888988999999999987663332 33444444444432
Q ss_pred CCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccc
Q 002921 718 LKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVS 788 (865)
Q Consensus 718 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 788 (865)
-+..|...+|.+|..+...+ ...+.++..+.+-+.+.. ..++-.++...+++...+.....
T Consensus 480 ---vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E~---~evKlQILnL~aKLyl~~~~~~k 540 (968)
T KOG1060|consen 480 ---VPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDEG---DEVKLQILNLSAKLYLTNIDQTK 540 (968)
T ss_pred ---hhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhcccc---chhhHHHHHhhhhheEechhhHH
Confidence 34678888999999987643 245566777777777653 45677777777888877665533
No 53
>PRK09687 putative lyase; Provisional
Probab=99.28 E-value=8.1e-10 Score=110.16 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=173.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH
Q 002921 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (865)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~ 261 (865)
.+.+...|.|++..||..|+.+|..+-. +.+++.+..++.++++.+|..+..+|..+-..... ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 5567788899999999999999987643 12344555566788999999999999987542111 22
Q ss_pred HHHHHHhhh-cCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCC
Q 002921 262 NLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (865)
Q Consensus 262 ~l~~~l~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (865)
..++.+... .+++++.||..++..++.++.....+ ...++..+...+..
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D------------------------ 139 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFD------------------------ 139 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhC------------------------
Confidence 344444444 57889999999999998875432111 11122222111110
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002921 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (865)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (865)
.+|.+|..+...|+.+. + +..++.+...+++++ |.+|..|..+||.+.
T Consensus 140 ----------------------~~~~VR~~a~~aLg~~~----~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 140 ----------------------KSTNVRFAVAFALSVIN----D---EAAIPLLINLLKDPN---GDVRNWAAFALNSNK 187 (280)
T ss_pred ----------------------CCHHHHHHHHHHHhccC----C---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcCC
Confidence 13568999999885432 2 345677777788888 999999999999983
Q ss_pred hchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHH
Q 002921 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (865)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 500 (865)
.+ -+.+++.++..+.|+++.||..|.++||++.. ...++.+++.+++++ ++..++
T Consensus 188 ~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~ 242 (280)
T PRK09687 188 YD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLII 242 (280)
T ss_pred CC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHH
Confidence 21 13567788888999999999999999987432 267888999899866 677788
Q ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhc-ccchhhHHHHHHHHH
Q 002921 501 SAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (865)
Q Consensus 501 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~~~~l~ 545 (865)
.+++.+-. +..++.|..+++ ..+..++..+.+++.
T Consensus 243 ~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 243 EAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88886643 356666667675 445566666666654
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=1e-09 Score=129.18 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=194.4
Q ss_pred HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
++.|.+.+.++++.+|..|+..|+.+.. +..++.|.+.|.|+++.||..|+.+|..+.+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 4678888899999999999999876521 4567888899999999999999999988865432
Q ss_pred HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
. .+.+...++++++.+|..++..|..+..... ..++..+.+.+..+|..|+..+..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 1 1234445567788999999888877542111 1234467889999999998887764211
Q ss_pred CCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 002921 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (865)
Q Consensus 293 ~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~ 372 (865)
+. ++..+.. .++.+|..+.
T Consensus 745 -----------~~----l~~~l~D----------------------------------------------~~~~VR~~aa 763 (897)
T PRK13800 745 -----------ES----VAGAATD----------------------------------------------ENREVRIAVA 763 (897)
T ss_pred -----------HH----HHHHhcC----------------------------------------------CCHHHHHHHH
Confidence 11 1111110 1134899999
Q ss_pred HHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHH
Q 002921 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (865)
Q Consensus 373 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 452 (865)
..|..+...-+ ...+.+..++++++ +.+|.+++.+|+.+... +.+.+.+...+.|+++.||.+
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHH
Confidence 99877654322 12556667888888 99999999999987432 112345778899999999999
Q ss_pred HHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Q 002921 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 532 (865)
|+++|+.+.. +..++.|.+.+.|++..||..|..+|+.+- --+...+.|...+++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---------~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRWP---------GDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhCC
Confidence 9999986542 234578888899999999999999998861 1134566677888888
Q ss_pred chhhHHHHHHHHH
Q 002921 533 QRRNLRIVYDAIG 545 (865)
Q Consensus 533 ~~~~~~~~~~~l~ 545 (865)
+..++..+..+|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 8888887777765
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.28 E-value=3.5e-11 Score=114.31 Aligned_cols=356 Identities=11% Similarity=0.160 Sum_probs=220.3
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHh-chhhhhhccHHH-HHHHHHhcc-CCCChHHHHHHHHHHHhhHHHHhhh
Q 002921 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAE-GCIKGLYPHLSE-IVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~l~~-i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
+|.+.+.+.+.+ ......|..-+..+.. ...+.+.+.+.. ++|.++..+ +..+...+..|.|++.+++......
T Consensus 73 lp~lt~~l~SdD---ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 73 LPQLTQQLFSDD---IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hHHHHHHHhhhH---HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 356666666666 6666666666655543 222233343333 677777777 4556678889999999998754321
Q ss_pred hCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccch--hhHHHHHHH
Q 002921 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR--RNLRIVYDA 543 (865)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~--~~~~~~~~~ 543 (865)
...-.-...+|.+++.|.+++..||+.+.+||++++.... ....|+ ...++.++.++.+... ...+.+..+
T Consensus 150 ----TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWt 224 (526)
T COG5064 150 ----TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWT 224 (526)
T ss_pred ----eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHH
Confidence 1111123567888999999999999999999999985431 112221 1244445555554433 456678888
Q ss_pred HHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchH-HHHHHHHHHHHHHHHH
Q 002921 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ-PVFQRCINIIQTQQLA 621 (865)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~ 621 (865)
++.+++.-.+.-.. ..+.+.+|.|.+.+.. .|+++ ..++-+++++...-.+....-++ .+.+++++.|...
T Consensus 225 LSNlcRGknP~P~w-~~isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--- 297 (526)
T COG5064 225 LSNLCRGKNPPPDW-SNISQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--- 297 (526)
T ss_pred HHHhhCCCCCCCch-HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc---
Confidence 88887643322110 2456777777776654 34443 56666677666533332211111 1344555555431
Q ss_pred hhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhh
Q 002921 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR 701 (865)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (865)
+..+..-++..+++++.+......-.+.- ..++.+...+++....+|..|++++..+.....+++...
T Consensus 298 -----------sa~iqtPalR~vGNIVTG~D~QTqviI~~-G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 298 -----------SAKIQTPALRSVGNIVTGSDDQTQVIINC-GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred -----------cccccCHHHHhhcCeeecCccceehheec-ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHH
Confidence 33344456777777776555444444443 466666677888888999999999999998877777655
Q ss_pred HH-HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc--ccccchHHH--HHHHHHHHhcCchhhhhhHHHHHHHHH
Q 002921 702 LS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--QEISPIVMT--VVLCLVPILKHSEELNKSLIENSAITL 776 (865)
Q Consensus 702 ~~-~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~--il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (865)
++ .++|.+...+... ...++..|||++.+....+- .+...|+.. .+..+..+|.-.. ..+.+.++.++
T Consensus 366 id~nliPpLi~lls~a----e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d---Nkiiev~LD~~ 438 (526)
T COG5064 366 IDANLIPPLIHLLSSA----EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD---NKIIEVALDAI 438 (526)
T ss_pred HhcccchHHHHHHHHH----HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC---ccchhhhHHHH
Confidence 54 4888888888877 67899999999998765542 233345422 5666777776552 33556666665
Q ss_pred Hhhh
Q 002921 777 GRLA 780 (865)
Q Consensus 777 ~~l~ 780 (865)
..+.
T Consensus 439 eniL 442 (526)
T COG5064 439 ENIL 442 (526)
T ss_pred HHHH
Confidence 5444
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.6e-07 Score=98.35 Aligned_cols=494 Identities=17% Similarity=0.125 Sum_probs=272.1
Q ss_pred HHhhhhhCC-ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCC
Q 002921 97 ELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (865)
Q Consensus 97 ~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (865)
.|.++|.+. +...+.+.-.+++.||+.. ....++|.+.+...+.+..++.....-|-..++.-+..-
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~---dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--------- 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGK---DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--------- 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce---------
Confidence 456667654 5667777777888888754 478999999999999999999887766655555432210
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh
Q 002921 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 255 (865)
---+..+.+.|.|+++.+|..|+.++..+--.+ ..+-+|-.+-+...|+.+.+|+.|.-++..+-...++.
T Consensus 107 ---LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 107 ---LLSINTFQKALKDPNQLIRASALRVLSSIRVPM------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred ---eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 112567889999999999999999998873221 12334556667788999999999999998888766653
Q ss_pred hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcc-cC--CC
Q 002921 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE-DE--SL 332 (865)
Q Consensus 256 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~-~~--~~ 332 (865)
- .+++..+-..+.|.++-|.-.|.-++..+|-. ..+.+.+++..+...+ .|.+.|.--- .. .+
T Consensus 178 k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIHknyrklC~ll--------~dvdeWgQvvlI~mL~R 243 (968)
T KOG1060|consen 178 K----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIHKNYRKLCRLL--------PDVDEWGQVVLINMLTR 243 (968)
T ss_pred H----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhhHHHHHHHhhc--------cchhhhhHHHHHHHHHH
Confidence 2 25555555567787777777766666666544 4556666666554443 1222221000 00 00
Q ss_pred CCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC---cchhhhhHHHHHHhhccCCCcchhHH
Q 002921 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG---DEILPTLMPVIQAKLSASGDEAWKDR 409 (865)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~r 409 (865)
-.+.+.++|...... .+ ++ -|.+-...... ....| +.-+..++.....++++.+ ..+-
T Consensus 244 YAR~~l~~P~~~~~~------~e---~n------~~~~~~~~~~~-~~~~P~~~d~D~~lLL~stkpLl~S~n---~sVV 304 (968)
T KOG1060|consen 244 YARHQLPDPTVVDSS------LE---DN------GRSCNLKDKYN-EIRTPYVNDPDLKLLLQSTKPLLQSRN---PSVV 304 (968)
T ss_pred HHHhcCCCccccccc------cc---cC------ccccccccccc-ccCCCcccCccHHHHHHhccHHHhcCC---cHHH
Confidence 000111111110000 00 00 00000000000 00011 2233445555566677776 6776
Q ss_pred HHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc
Q 002921 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (865)
Q Consensus 410 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 489 (865)
-+++.++..++... ....++..++..|.. ++.+|...+..+..++..-+ ..+...+..++-.-.
T Consensus 305 mA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~---------~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 305 MAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRP---------TLFEPHLKSFFVRSS 368 (968)
T ss_pred HHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch---------hhhhhhhhceEeecC
Confidence 77666666665322 233456666665544 56677777666666665432 233333333333323
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHH
Q 002921 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (865)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 569 (865)
|+ ..++.--...|.+++.. ..+..|+..+...+.+.+......+..+||.++...+ .+-+.+|+.|+
T Consensus 369 Dp-~~vk~lKleiLs~La~e------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv 435 (968)
T KOG1060|consen 369 DP-TQVKILKLEILSNLANE------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLV 435 (968)
T ss_pred CH-HHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHH
Confidence 32 23333334445555442 1356677777777777666555567777777776655 45577888888
Q ss_pred HHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHH
Q 002921 570 AKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (865)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~ 649 (865)
..+.+.+ ...+......+..+...-... -.+++..+.+.+..-. -..-+.+++=+++..++
T Consensus 436 ~Llsshd--e~Vv~eaV~vIk~Llq~~p~~----h~~ii~~La~lldti~-------------vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 436 QLLSSHD--ELVVAEAVVVIKRLLQKDPAE----HLEILFQLARLLDTIL-------------VPAARAGIIWLIGEYCE 496 (968)
T ss_pred HHHhccc--chhHHHHHHHHHHHHhhChHH----HHHHHHHHHHHhhhhh-------------hhhhhceeeeeehhhhh
Confidence 8887642 222233334444444322211 1123333333332211 11223344444554444
Q ss_pred HhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhh
Q 002921 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL 698 (865)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (865)
... ... +.++..+.+-+.++...+|-..+.+...+.....+++
T Consensus 497 ~vp----ri~--PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~ 539 (968)
T KOG1060|consen 497 IVP----RIA--PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQT 539 (968)
T ss_pred hcc----hhc--hHHHHHHHHhhccccchhhHHHHHhhhhheEechhhH
Confidence 311 122 2477777777888888888777666555555444443
No 57
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=6e-06 Score=94.62 Aligned_cols=238 Identities=15% Similarity=0.166 Sum_probs=169.5
Q ss_pred ChhhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCC
Q 002921 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (865)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~ 87 (865)
+.....+++.++....+| +++ .|.+|.+.+.+++..|+.|.....|+.. +..+.+|++|..+|-+.++.+|+.++
T Consensus 5 ~~~l~~~lldavv~~~~~~~s~~-~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 5 DNKLDSELLDAVVVTLNPEGSNE-ERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred chhHHHHHHHhHHHHhCcccchH-HHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCC
Confidence 344556788888888877 555 8999999999999999999988999875 67899999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhh--CC-------ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHH
Q 002921 88 PSNQQYIKSELLPCLG--AA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (865)
Q Consensus 88 ~~~~~~i~~~ll~~l~--~~-------~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l 158 (865)
.+.+..+|...+.... .+ ...++.+++..+-.|++.++++.||++++.+.+.+.. ++..++.++.++..+
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLL 160 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHH
Confidence 9999999999888653 11 3458999999999999999999999999999998874 456777788888777
Q ss_pred HhhchhhcccC----CCCCCCcc----hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh
Q 002921 159 CEDIPQVLDSD----VPGLAECP----INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS 230 (865)
Q Consensus 159 ~~~~~~~~~~~----~~~~~~~~----~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 230 (865)
.+++-..-... ...++... +..+...........+.++-.+++..+..+.+++|-...-.... +..++...
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~-l~~~l~~~ 239 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNI-LELLLNKF 239 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhh-HHHHHHhc
Confidence 77653211100 00000011 11222222222223333488888999999998887432211111 34443333
Q ss_pred CCCCHHHHHHHHHHHHHHHhhch
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~ 253 (865)
. ..+..|..+++||..++....
T Consensus 240 l-n~~~~r~~al~CL~ei~s~~~ 261 (1041)
T KOG2020|consen 240 L-NAPELRNNALSCLTELLSRKR 261 (1041)
T ss_pred c-chHHHHHHHHHHHHHHHhccc
Confidence 2 246788899999999887643
No 58
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=9.1e-08 Score=104.80 Aligned_cols=315 Identities=17% Similarity=0.192 Sum_probs=212.7
Q ss_pred HHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHh
Q 002921 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL 215 (865)
Q Consensus 136 l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~ 215 (865)
++.++++.+......+..+|..+.+..... ...+++.+.+..+|.++++.||..+++.++.++..... .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~----------~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~ 111 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPD----------SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-A 111 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHH----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-H
Confidence 778888777777778888898888865432 22578899999999999999999999999999876432 2
Q ss_pred HHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 216 FVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 216 ~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
...+ ..+++.++..+.+++..+...|..+|..++..... +...+ +.+...+...+...++.+|..+++++..++..
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 2222 35678888889999999999999999999975432 22111 12255555566666778999999999888776
Q ss_pred CCchhhHHhhh-hhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 293 QLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 293 ~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
......... ..+++.++..+.. + | --++..+
T Consensus 191 --S~~~~~~~~~sgll~~ll~eL~~--d----------------------------------------D----iLvqlna 222 (503)
T PF10508_consen 191 --SPEAAEAVVNSGLLDLLLKELDS--D----------------------------------------D----ILVQLNA 222 (503)
T ss_pred --CHHHHHHHHhccHHHHHHHHhcC--c----------------------------------------c----HHHHHHH
Confidence 222222111 1355555443322 1 1 1268889
Q ss_pred HHHHHHHHhhhC-cchh--hhhHHHHHHhhccCCCcch----hHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC
Q 002921 372 AAALDVLSNVFG-DEIL--PTLMPVIQAKLSASGDEAW----KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (865)
Q Consensus 372 ~~~l~~l~~~~~-~~~~--~~~~~~l~~~l~~~~~~~~----~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (865)
.+++..++..-. -..+ ..+++.+...+.+...+ + -.--+.+..+|.++...+..+...++.++..+...+.+
T Consensus 223 lell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d-p~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 223 LELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED-PRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES 301 (503)
T ss_pred HHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC-CcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC
Confidence 999999998442 2221 24566666666543211 2 11223335556666654445556678888888888899
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhC-CCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIG-HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (865)
.++..+..|+.++|.++....+..- .....+.++.++..+..........+|.++..+++.++....
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999876543100 012234556777777777777778899999999999986543
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=1.4e-05 Score=91.82 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHhc-CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH
Q 002921 110 RSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (865)
Q Consensus 110 r~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (865)
+..+..+.-.++..- +...+...+..++..+..+....|-.|++||+.+++.=+..+.. +.+-..+-.-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~----------~dvq~~Vh~R 863 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR----------PDVQEAVHGR 863 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC----------HHHHHHHHHh
Confidence 444454555555443 45677888899999999888999999999999999876554432 6666777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHh
Q 002921 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (865)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~ 268 (865)
+.|++..||.+|++.++.++-..|+-+.++++. +.+.+.|....||+.+++.+..+++..|++ ..+..+.-.++
T Consensus 864 ~~DssasVREAaldLvGrfvl~~~e~~~qyY~~----i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakml 937 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVLSIPELIFQYYDQ----IIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKML 937 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhhccHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHH
Confidence 899999999999999999998766655555544 444456777899999999999999999887 45666666666
Q ss_pred hhcCCCCHHHHHHHHHHHHHh
Q 002921 269 QVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l 289 (865)
.-..|++..+...+++.+..+
T Consensus 938 rRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 938 RRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHhccchhHHHHHHHHHHHHH
Confidence 667777666777777766554
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.18 E-value=6.4e-10 Score=105.86 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=217.0
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhh-chhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICED-IPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~ 209 (865)
=+|.+.+.+.|++....+.|..-++.+... ..+.+. ...-..++|.+.+++.. .....+-.|..++.++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq-------~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS 144 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQ-------PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCch-------hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc
Confidence 348888888888877777776666555432 221111 01225678899999944 555667788899988876
Q ss_pred cccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH--HHHHHHhhhcCCCC--HHHHHHHHH
Q 002921 210 LMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTD--DDVALEACE 284 (865)
Q Consensus 210 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~--~~v~~~a~~ 284 (865)
.......-.+ ..-+|.+++++.+++.++|.++.-+|+.++...+.. ..|+- ..++.++..+.+.- -.+.+.+.=
T Consensus 145 Gtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred CcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 5322111000 123567777788889999999999999988754432 22221 22333333333332 234445555
Q ss_pred HHHHhhccC---CchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 002921 285 FWHSYFEAQ---LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (865)
Q Consensus 285 ~l~~l~~~~---~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (865)
.++.+|+.+ ..+..+.. .+|++.+.+-.-+.+
T Consensus 224 tLSNlcRGknP~P~w~~isq----alpiL~KLiys~D~e----------------------------------------- 258 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQ----ALPILAKLIYSRDPE----------------------------------------- 258 (526)
T ss_pred HHHHhhCCCCCCCchHHHHH----HHHHHHHHHhhcCHH-----------------------------------------
Confidence 567787762 23444433 333333221111110
Q ss_pred cccccHHHHHHHHHHHHHhhhCc---chh-hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHH
Q 002921 362 VNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVA 436 (865)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~ 436 (865)
+-.-|..+++.++..-.+ .++ .-+.+.+.+.+.+++ .+...-++..+|.++.+......-.++ ..++
T Consensus 259 -----vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 259 -----VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccHH
Confidence 233355555555443322 111 123456777888887 888888999999999887654322222 2566
Q ss_pred HHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--ccch
Q 002921 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEEL 514 (865)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~ 514 (865)
.+.+.|.++...+|..|||+++++...-... ...-.-..++|.|+..|...+-.+|..||+|+.+....+ ....
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteq----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ 406 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQ----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDI 406 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHH----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchH
Confidence 6677788999999999999999987543221 112223567888999999888999999999999887654 2333
Q ss_pred hhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002921 515 APRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (865)
Q Consensus 515 ~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 549 (865)
..|+ ...+..|.++|.-.+.+....+++++..+.+
T Consensus 407 iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 407 IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 4443 2466777777777777777777888887765
No 61
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.6e-05 Score=83.72 Aligned_cols=388 Identities=10% Similarity=0.064 Sum_probs=223.2
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc-----CCCCh-HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-----DDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (865)
...|-.|-..+..+....++-+.|.+-+++....++. +|-.. ..+.++..++|.-+..+... -++-.-
T Consensus 411 y~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~------~dF~~W 484 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNI------LDFDKW 484 (978)
T ss_pred eccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHH
Confidence 3466666666666666666666666656555545544 23233 34555666777666665532 222222
Q ss_pred HHHHHHHHHc-C--CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHH---hc
Q 002921 480 VLMGLLKRIL-D--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADA---VG 552 (865)
Q Consensus 480 ~~~~l~~~l~-d--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~---~~ 552 (865)
+...++.-+. | ....+|.+.++.++..+.. +......+.+...+++++++.++. ++..+.+++..++.- ..
T Consensus 485 l~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ 562 (978)
T KOG1993|consen 485 LQEALLPELANDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE 562 (978)
T ss_pred HHHhhCHHhhhcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence 2333333333 2 2456789999999988763 222233456777888899888554 455777777777763 33
Q ss_pred ccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 002921 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY 632 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 632 (865)
+.|. ||++.+...+++.+...++-|.. ..++.+++.+....++.+.||...++..+=+..+... .
T Consensus 563 dsFl--p~lenlf~~lfkll~~~~e~Dtk-~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~------------~ 627 (978)
T KOG1993|consen 563 DSFL--PYLENLFVLLFKLLKAVEECDTK-TSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE------------E 627 (978)
T ss_pred hhhh--hhHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc------------c
Confidence 4555 78888888888888776543332 4788889999999999999999888776655555431 1
Q ss_pred CcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChh---HHHHHHHHHHHHHhhchhhhHhhHHHHHHHH
Q 002921 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASD---VRQSAFALLGDLARVCPVHLQARLSDFLDIA 709 (865)
Q Consensus 633 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 709 (865)
+.-++...+.++..++.++|....++.+- ++|.+-.+..-.+++ ....++.+++....+. ..+.|-+-.++|.+
T Consensus 628 e~lLr~alL~~L~~lV~alg~qS~~~~~f--L~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l 704 (978)
T KOG1993|consen 628 EPLLRCALLATLRNLVNALGAQSFEFYPF--LYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHL 704 (978)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCccchHH--HHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHH
Confidence 44567788899999999999887766653 777776665433333 3467888888887765 33444444444444
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccc
Q 002921 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQ-EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVS 788 (865)
Q Consensus 710 ~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 788 (865)
.-.+..+ .... ..+...+...+.-.++ -+..|...+.+.+...+.+- +..-....+..+..++..+|-.-.
T Consensus 705 ~~~iE~s----te~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv---r~egl~avLkiveili~t~~il~~ 776 (978)
T KOG1993|consen 705 LYIIEQS----TENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV---RNEGLQAVLKIVEILIKTNPILGS 776 (978)
T ss_pred HHHHHhh----hhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4444433 1222 2333333332222222 23457777777777777543 233344455555556655542111
Q ss_pred ccHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhCch
Q 002921 789 PHMEHFMQPWCIALSM-IRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 789 ~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
.+.+.+++..+..+-. .+....-...+..+..+.-.||.
T Consensus 777 ~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~ 816 (978)
T KOG1993|consen 777 LLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPS 816 (978)
T ss_pred hhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChH
Confidence 2333344443333322 22223333344444444445664
No 62
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-05 Score=87.04 Aligned_cols=444 Identities=13% Similarity=0.107 Sum_probs=252.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHhc--CcCChHHHHHHHH
Q 002921 61 EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLG--GIAGWLELLQALV 137 (865)
Q Consensus 61 ~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~l~ 137 (865)
++.+..+|..||..+.+...+ ++.+..+++....+..++.. ++..=+.++.+++.+|... .+...++++|.+.
T Consensus 351 ~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~ 426 (1133)
T KOG1943|consen 351 SDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLIL 426 (1133)
T ss_pred cCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 378899999999998877665 67777778888888866533 4566678999999999885 5677889999999
Q ss_pred Hhhcc--------CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH-HHHHhcCCCHHHHHHHHHHHHHHh
Q 002921 138 TCLDS--------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQSPHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 138 ~~l~~--------~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~vr~~a~~~l~~~~ 208 (865)
+.+.- ....+|.+|..++-.+...+.+.-- ++.+..+.+. +...+=|++..+|++|.-++-..+
T Consensus 427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-------~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-------KPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-------hHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 88742 2347899998888888777655311 1223334443 344556788899999999998876
Q ss_pred ccc---cH--H----------------------hHHhHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHhhchhhh
Q 002921 209 MLM---PS--A----------------------LFVSMDQYLQGLFLL-----SNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 209 ~~~---~~--~----------------------~~~~~~~~l~~l~~~-----~~~~~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
... |. + ....++.+...+++- +.+-+..+|..+..+|..+....|+.+
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 431 10 0 011233333333332 234578899999999999999888877
Q ss_pred h-hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCc
Q 002921 257 E-PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (865)
Q Consensus 257 ~-~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~ 335 (865)
. .+++.+++..+ ..+...|...+-....+... . ..+.|.+..+...-+..+..
T Consensus 580 a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~--~-~~l~~~~~~l~e~~i~~l~~------------------- 633 (1133)
T KOG1943|consen 580 ADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGA--L-RKLEPVIKGLDENRIAGLLS------------------- 633 (1133)
T ss_pred cccchhhhhhhhc----CCChHHhhhhHHHHHHHHHH--h-hhhhhhhhhhHHHHhhhhhh-------------------
Confidence 6 46667766532 33444454444333333222 0 11112222221111111100
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc----chhhhhHHHHHHhhccCCCcchhHHHH
Q 002921 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREA 411 (865)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~r~~ 411 (865)
.+.|........| ..--.|.+....+..+...-.. -+.......+.+.+.++ -..|.+
T Consensus 634 --ii~~~~~~~~~rg------------~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~----n~i~~~ 695 (1133)
T KOG1943|consen 634 --IIPPICDRYFYRG------------QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP----NQIRDA 695 (1133)
T ss_pred --hccHHHHHHhccc------------hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch----HHHHHH
Confidence 0000000000000 0001233344444333332221 11111222233333222 278899
Q ss_pred HHHHHHHHHhchhhhhhccHHHHHHHHHhccCCC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-
Q 002921 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL- 489 (865)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 489 (865)
+..+++.++...-..=......++...+..+.++ +..+|.....+++.+....- ...+-+.+...++...-
T Consensus 696 av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i-------~~~~q~~lc~~~l~~~p~ 768 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELI-------HRHLQEKLCKLVLELLPS 768 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhh-------chHHHHHHHHHHhccCcc
Confidence 9999999876543211111124667777777666 77888888777877765432 12223334444444333
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHhcccch--------hhHHHHHHHHHHHHHHhc-ccCCchh
Q 002921 490 DTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQR--------RNLRIVYDAIGTLADAVG-FELNQPV 559 (865)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~--------~~~~~~~~~l~~l~~~~~-~~~~~~~ 559 (865)
|..+.-|.....++..+++..+ ......+.++++.|+++++++.. -+++.++.++..+...+. +++.+++
T Consensus 769 d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~ 848 (1133)
T KOG1943|consen 769 DAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDED 848 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHH
Confidence 2256678888888888887765 33444566777777777776532 246778888877766544 4444333
Q ss_pred hHhhhhH
Q 002921 560 YLDILMP 566 (865)
Q Consensus 560 ~~~~l~~ 566 (865)
....++.
T Consensus 849 ~i~~~~~ 855 (1133)
T KOG1943|consen 849 SINRIIR 855 (1133)
T ss_pred HHHHHHH
Confidence 3444433
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.4e-06 Score=90.57 Aligned_cols=303 Identities=14% Similarity=0.148 Sum_probs=188.3
Q ss_pred HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
...|.+-+++++.-+.-.|+.+|+.++. +++ .+++.|.+.+.+++.++-+|+.|+.|...++...|
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s---~Em-----------ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICS---PEM-----------ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCC---HHH-----------hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 3555566667777777777777776654 322 37889999999999999999999999999998754
Q ss_pred HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhh----cCC-----------CCHH
Q 002921 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV----NKD-----------TDDD 277 (865)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~----~~~-----------~~~~ 277 (865)
+- ++.+++....++.+.+..+-...+..+..+++..++.+. |..++++.++.. ... .++-
T Consensus 175 ~l----~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 175 DL----VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hH----HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 43 334455555555566666666777778888887665542 333344433322 211 2455
Q ss_pred HHHHHHHHHHHhhcc-CCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (865)
Q Consensus 278 v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (865)
.+..++.++.-+... +...+.+-..+.+ ....++.
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaq-------vatntds------------------------------------- 285 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQ-------VATNTDS------------------------------------- 285 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHH-------HHhcccc-------------------------------------
Confidence 666777777666554 1111112111111 1111110
Q ss_pred CCccccccccH-HHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHH
Q 002921 357 DDDDIVNVWNL-RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (865)
Q Consensus 357 ~~~d~~~~~~~-r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i 434 (865)
+-++ -..-++|+..+....++ .....-+.++-+.+.+.+ -..|+.|+..|......-+..+.+|-.
T Consensus 286 -------skN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~NirYvaLn~L~r~V~~d~~avqrHr~-- 353 (866)
T KOG1062|consen 286 -------SKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---NNIRYVALNMLLRVVQQDPTAVQRHRS-- 353 (866)
T ss_pred -------cccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---cceeeeehhhHHhhhcCCcHHHHHHHH--
Confidence 0000 01123444444444433 333344556666666777 788999999988888766655555543
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch
Q 002921 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL 514 (865)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~ 514 (865)
.|+.|++||+..+|++|+...-.+.. ...+..++..++..|...++.++..+..-+..+++.....-
T Consensus 354 --tIleCL~DpD~SIkrralELs~~lvn-----------~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 354 --TILECLKDPDVSIKRRALELSYALVN-----------ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred --HHHHHhcCCcHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc
Confidence 46789999999999999876654443 45667788888888887788888888887777777655444
Q ss_pred hhhHHHHHH
Q 002921 515 APRLEIILQ 523 (865)
Q Consensus 515 ~~~~~~i~~ 523 (865)
.-|++.++.
T Consensus 421 ~W~idtml~ 429 (866)
T KOG1062|consen 421 RWHIDTMLK 429 (866)
T ss_pred hhHHHHHHH
Confidence 455555443
No 64
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.09 E-value=4.3e-06 Score=93.85 Aligned_cols=222 Identities=15% Similarity=0.112 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhh-----hC-----CChhHHHHHHHHHHHHHHhcCcCChHH
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GA-----ADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l-----~~-----~~~~vr~~~a~~l~~i~~~~~~~~w~~ 131 (865)
+...++||.|++.++..+..+...++.+..+.+.-.++..+ .+ -...||.+.|++++...++.......+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 57789999999999999999998887766665555544432 12 134799999999999999987777888
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
.+..+.+++..++++.|++++..+...+.-..+.+ ....+.+++.+...+.|.+..||..|.+.+.......
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 89999999999999999999998876665222222 1345788889999999999999999999988776554
Q ss_pred cHHhHHhHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHHHhhc-h-hhh-h-hhHHHHHHHHhhhcCCCCHHHHHHHHH
Q 002921 212 PSALFVSMDQYLQGLFLLSN---DPSAEVRKLVCAAFNLLIEVR-P-SFL-E-PHLRNLFEYMLQVNKDTDDDVALEACE 284 (865)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~---~~~~~~r~~~~~~l~~l~~~~-~-~~~-~-~~l~~l~~~l~~~~~~~~~~v~~~a~~ 284 (865)
+......+..++..+...+. +-.+.. ......+..++... - +.. . ..-..+++..+..+.+.-..++..+++
T Consensus 240 v~l~~~~i~~lv~~l~~~l~~lddl~~s~-~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~ 318 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWSFLLELDDLSSST-ASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALE 318 (1549)
T ss_pred HhhhHhHHHHHHHHHHHHHHHhhhcchhh-HHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 32222333334433333221 111110 00111111111110 0 000 0 011234455554555555567888888
Q ss_pred HHHHhhcc
Q 002921 285 FWHSYFEA 292 (865)
Q Consensus 285 ~l~~l~~~ 292 (865)
++..+.+.
T Consensus 319 ~l~~lle~ 326 (1549)
T KOG0392|consen 319 TLAMLLEA 326 (1549)
T ss_pred HHHHHHhc
Confidence 88887766
No 65
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.07 E-value=1.7e-09 Score=87.14 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 002921 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (865)
Q Consensus 408 ~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (865)
.|.+++.+|+.++.+.++.+.++++.+++.++.++.|++++||..||.++.++++...+. ..+++.++++.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 589999999999999999899999999999999999999999999999999999998753 567999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHH
Q 002921 488 ILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 488 l~d~~~~vr~~a~~al~~l~ 507 (865)
+.|+++.||..|. .|..++
T Consensus 77 ~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 77 SADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred HcCCchhHHHHHH-HHHHHh
Confidence 9999999998764 455544
No 66
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=5.9e-09 Score=100.41 Aligned_cols=377 Identities=14% Similarity=0.087 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHhhhCcc-hh---hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh-ccHHHHHHHHHhc
Q 002921 367 LRKCSAAALDVLSNVFGDE-IL---PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPL 441 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~-~~---~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 441 (865)
+..+|...++.++-..+.. ++ .-+-+.+.+++.+. -..|..+.-|+..++..-....+ .+... +..+.+.
T Consensus 101 Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~----vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltrL 175 (550)
T KOG4224|consen 101 IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG----VEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTRL 175 (550)
T ss_pred hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC----cEEEeeehhhhhhhhccccchhhhhhccc-hhhhHhh
Confidence 5677888888888777642 22 22334666666654 35566666777777654221111 12222 2334456
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--ccchhhhHH
Q 002921 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLE 519 (865)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~~~~~~ 519 (865)
-+..+.++|+.+.-++..+...... ...-....-++.++..+...+..||.+|+.+++++.-.- ...+..--|
T Consensus 176 akskdirvqrnatgaLlnmThs~En-----Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSREN-----RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhh-----hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 6778889999998888877654321 112223455788999999999999999999999987542 455666667
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccc
Q 002921 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG 599 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 599 (865)
.+++.|+.++++.+.+++..+--+++.++....-. .+-.-..-+|.+++.++.. --+.+..-.-|+.++.-.-+.+
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq--~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ--REIVEAGSLPLLVELLQSP--MGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh--hHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhcccccCcc
Confidence 89999999999999999988888888776532111 0011123457777777543 2344455666777776544442
Q ss_pred cc----cchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCC
Q 002921 600 FT----QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD 675 (865)
Q Consensus 600 ~~----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 675 (865)
.. .|+.++ +.+|.-. +..++...+.+++..++.....+-..+... .-+|.+...+.|.
T Consensus 327 ~lI~dagfl~pL----VrlL~~~-------------dnEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 327 VLIADAGFLRPL----VRLLRAG-------------DNEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDG 388 (550)
T ss_pred cceecccchhHH----HHHHhcC-------------CchhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcC
Confidence 21 234443 3344421 123466677788888887766666655554 5778888888898
Q ss_pred ChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc--ccc----chH
Q 002921 676 ASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ--EIS----PIV 747 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~----~~~ 747 (865)
.-.++...-.|+..++..- ....++- .++|.+...+.+. +.+++.||+.+++++...... .+. .-+
T Consensus 389 pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~----s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 389 PVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSE----SEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred ChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCcc----chhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 8899988777788777653 2222222 3777777777777 789999999999999865431 110 012
Q ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCC
Q 002921 748 MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (865)
Q Consensus 748 ~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (865)
..+-..+...+...+ ..++--+..++-++...+.
T Consensus 463 ~gi~g~L~Rfl~S~~---~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 463 QGIQGRLARFLASHE---LTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhCC
Confidence 334444555554432 2344445556666665443
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=7.5e-05 Score=79.48 Aligned_cols=249 Identities=15% Similarity=0.136 Sum_probs=151.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 002921 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (865)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (865)
-.-+.+++.---..|+.+|..|+.. .+ -..+-+.++.++++..+.+|+.|+..+..+...+|+.+.+.++.+.+
T Consensus 115 rkdl~S~n~ye~giAL~GLS~fvTp---dL---ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E 188 (877)
T KOG1059|consen 115 RKDLNSSNVYEVGLALSGLSCIVTP---DL---ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE 188 (877)
T ss_pred HHHhccCccchhhheecccccccCc---hh---hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH
Confidence 3334444433334566666666532 12 23445677778888889999999999999999999988877776665
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccccc
Q 002921 266 YMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (865)
Q Consensus 266 ~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 345 (865)
-+.|+|+.|...|..+++.+++. .++..-+. -|.++..|+..
T Consensus 189 ----kLeDpDp~V~SAAV~VICELArK--nPknyL~L----AP~ffkllttS---------------------------- 230 (877)
T KOG1059|consen 189 ----KLEDPDPSVVSAAVSVICELARK--NPQNYLQL----APLFYKLLVTS---------------------------- 230 (877)
T ss_pred ----hccCCCchHHHHHHHHHHHHHhh--CCcccccc----cHHHHHHHhcc----------------------------
Confidence 67899999999999999999886 22222222 23333333321
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHH--HHHhch
Q 002921 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALG--AIAEGC 423 (865)
Q Consensus 346 ~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~--~l~~~~ 423 (865)
.+.|-+ .....+++.++-.- ...-..+++-+.+.+.+... ...-+.++.++- .+..+.
T Consensus 231 ----------------sNNWmL-IKiiKLF~aLtplE-PRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 231 ----------------SNNWVL-IKLLKLFAALTPLE-PRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----------------CCCeeh-HHHHHHHhhccccC-chhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCC
Confidence 134532 11233333332211 12223444455555544431 222233333221 222222
Q ss_pred hhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002921 424 IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (865)
Q Consensus 424 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al 503 (865)
++. ...+.-.++.+-..+.|.++.+|+-++.+++.+.+.-+ ......-..++++|.|.++.+|.+|...+
T Consensus 291 ~d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp---------~~Vqa~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 291 SDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP---------KAVQAHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred CCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH---------HHHHHhHHHHHHHhccCCchhHHHHHHHH
Confidence 221 11122245566677889999999999999999887643 34445556788999999999999999988
Q ss_pred HHHHH
Q 002921 504 ATLEE 508 (865)
Q Consensus 504 ~~l~~ 508 (865)
..++.
T Consensus 361 ~gmVs 365 (877)
T KOG1059|consen 361 YGMVS 365 (877)
T ss_pred HHHhh
Confidence 77764
No 68
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.00 E-value=5.6e-08 Score=102.69 Aligned_cols=305 Identities=15% Similarity=0.208 Sum_probs=202.1
Q ss_pred ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCC--Ccch-hhHHH
Q 002921 511 AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS--DKDL-FPLLE 587 (865)
Q Consensus 511 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~-~~~~~ 587 (865)
+..+.|+.+.++..|+..+.......-+.+..|+..+....++... ++...+++.+...+....++ ++.. ..++|
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~--p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL--PIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG--GGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 4678899999999999999876544334566777777777777776 78888888888777654322 2333 57899
Q ss_pred HHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhh-hhhhhhcccc
Q 002921 588 CFTSIAQALGA----GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG-SGIESLVAQS 662 (865)
Q Consensus 588 ~l~~l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~~~~ 662 (865)
+++.+.+.... ....+-+.++|.+..+|++. -.++.-.+++.++.+++... +...+...+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d--------------V~EF~PYvfQIla~Lle~~~~~~~p~~y~~- 159 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD--------------VQEFIPYVFQILAQLLELRPSSPLPDAYKQ- 159 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT---------------TTTHHHHHHHHHHHHHHSS--S--TTTGG-
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCCCCcHHHHH-
Confidence 99999887654 23456677888888788753 23677788999999998766 333333333
Q ss_pred hHHHHHH-HHhcCCChhHHHHHHHHHHHHHhhchhhhH--hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002921 663 NLRDMLL-QCCMDDASDVRQSAFALLGDLARVCPVHLQ--ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (865)
Q Consensus 663 ~l~~~l~-~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 739 (865)
++|.++ ..+.+....+ .+.+.++..+++..+..+. .++..++..+-+.+.+.. ....+...+..++.+.
T Consensus 160 -L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~------~D~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 160 -LFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA------NDHYGFDLLESIVENL 231 (435)
T ss_dssp -GHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHHS
T ss_pred -HHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHC
Confidence 555444 4444555555 5666788888888876664 678889999888888762 2356888999999999
Q ss_pred cc-cccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhh-CCCccccc--------HHHHH-HHHHHHhccCCCh
Q 002921 740 RQ-EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPELVSPH--------MEHFM-QPWCIALSMIRDD 808 (865)
Q Consensus 740 ~~-~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~--------~~~~l-~~~~~~l~~~~~~ 808 (865)
+. .+.||+.+++..++..+..++ ....+...+.+++.++.+ +|+.+... ..+++ ..|+..++.....
T Consensus 232 p~~~l~~yl~~I~~lll~RLq~sk--T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~ 309 (435)
T PF03378_consen 232 PPEALEPYLKQIFTLLLTRLQSSK--TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP 309 (435)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc
Confidence 85 579999999999999998775 355666666666655532 33322221 22333 3477777887788
Q ss_pred HHHHHHHHHHHHHHhhCchhh---HhhHHHHHHHhhc
Q 002921 809 TEKEDAFRGLCAMVKANPSGA---LSSLVFMCRAIAS 842 (865)
Q Consensus 809 ~~~~~~~~~l~~l~~~~~~~~---~~~l~~~~~~~~~ 842 (865)
.+|+.+..|+++++...+... ...++.++.++..
T Consensus 310 ~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ 346 (435)
T PF03378_consen 310 IERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLK 346 (435)
T ss_dssp HHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHH
Confidence 899999999999998755322 2345555555443
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.2e-06 Score=87.91 Aligned_cols=190 Identities=15% Similarity=0.210 Sum_probs=129.6
Q ss_pred CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh
Q 002921 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (865)
++++..-.+-.-++.+|++..+.+|+.+..++-.++-.+ |+....-+|.|.+-+.++||.+..+|..++.++++.-+..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 456666667778889999999999999999888888765 4555667899999999999999999999999999876653
Q ss_pred cccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhccccH---H----hHH--------------------
Q 002921 166 LDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS---A----LFV-------------------- 217 (865)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~---~----~~~-------------------- 217 (865)
+ -.+.|.+++++... +.-+....++.++.+...-|. . +.+
T Consensus 216 y------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 Y------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred c------------ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 2 23455555555442 223333344444444332221 0 000
Q ss_pred ------------hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 002921 218 ------------SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (865)
Q Consensus 218 ------------~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~ 285 (865)
....-++.+-.++.+.+++.+--++-++..++..+|..+..|-+-+ ++++.|.|+.+|..|++.
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI----lrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI----LRCLDDKDESIRLRALDL 359 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH----HHHhccCCchhHHHHHHH
Confidence 0111123333334566677777777888888888887776665544 457789999999999999
Q ss_pred HHHhhcc
Q 002921 286 WHSYFEA 292 (865)
Q Consensus 286 l~~l~~~ 292 (865)
+..++..
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 9988765
No 70
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=0.00017 Score=81.51 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=83.1
Q ss_pred HhhhhhCCChhHHHHHHHHHHHHHHhcCc--------CChH-HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhccc
Q 002921 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--------~~w~-~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
++..+...+..+|+..-+++++++..... ...+ .++..+.+-+.+-++.+|..++.++..+++.-....
T Consensus 317 lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~-- 394 (1251)
T KOG0414|consen 317 LVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL-- 394 (1251)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc--
Confidence 34444567888999999999998866421 1223 388888899999999999999999999988654332
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
.....++.....-+.|.+.-||+.|++.+..+....|
T Consensus 395 -------~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 395 -------GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -------cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 2357788888888999999999999999999988766
No 71
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.98 E-value=2.6e-09 Score=84.26 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.5
Q ss_pred HHHHHHHHhcC-CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC--------cCCHhHHHHHHHHHhhhhh
Q 002921 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (865)
Q Consensus 36 a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~--------~~~~~~~~~i~~~ll~~l~ 103 (865)
||++|++++++ |+|+..|++++.+ .+.++.+|++|++.|||.|.++|. .++++.|..||+.++++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999988 9999999999975 477999999999999999999999 8999999999999999774
No 72
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.94 E-value=0.00031 Score=81.31 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=110.6
Q ss_pred HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
.....++..+.++...+|..+-.+++.|+..++. -.-|++-..+..-+.+....+|++|+..++..+-..++
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e------- 888 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE------- 888 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-------
Confidence 3345566677788999999999999999998743 34578888888989999999999999999877765543
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002921 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 248 (865)
...++...+...+.|++..||+.+++.+..+....|+. +..+.+...++....|.+..+++.++++|..+
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 34777888889999999999999999999998765542 22333445555556777777899999988654
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.4e-05 Score=86.15 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=127.6
Q ss_pred CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh
Q 002921 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (865)
.++|-...+-..+-+++..+++.||++++.+...+.+.. |+....+++...+.+.+.+..+..+++..+..+|+.-++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 355555555566667788899999999999999999886 4455666777777788888888888899999998876654
Q ss_pred cccCCCCCCCcchhhhHHHHHHHhcC---------------CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHh-
Q 002921 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL- 229 (865)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~---------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~- 229 (865)
+. +++++++.++..|.+ ++|-++...+..|+-+....++ ..+.|..++..+..-
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcc
Confidence 42 235566666655543 3677777778777777655332 122222222222221
Q ss_pred ------------------h-CCCCHHHHHHHHHHHHHHHhhchhhhhh----hH-------HHHH----HHHhhhcCCCC
Q 002921 230 ------------------S-NDPSAEVRKLVCAAFNLLIEVRPSFLEP----HL-------RNLF----EYMLQVNKDTD 275 (865)
Q Consensus 230 ------------------~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~----~l-------~~l~----~~l~~~~~~~~ 275 (865)
. -.++...|..+..+|..+..+....++- .+ ++.+ ..++.+++|.|
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 1 1245667788888888777554332210 00 1111 13556789999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002921 276 DDVALEACEFWHSYFEA 292 (865)
Q Consensus 276 ~~v~~~a~~~l~~l~~~ 292 (865)
..+++.|+|....+...
T Consensus 364 ~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999988776
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.88 E-value=5.7e-05 Score=78.05 Aligned_cols=271 Identities=14% Similarity=0.115 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhhh-CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCC
Q 002921 368 RKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (865)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (865)
--.++..+.+++... |+++++..+..+...+.+.. ...|.+|+..|..++-..+..+... -+-+-..++|.|
T Consensus 281 ~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~r---v~~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~N 353 (898)
T COG5240 281 FLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTR---VVLRFSAMRILNQLAMKYPQKVSVC----NKEVESLISDEN 353 (898)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhccc
Confidence 334556666666555 88999999999999999988 8999999999999998766433211 111223345666
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~ 526 (865)
..+..-|+. .+.+. ...+.++.++..+...+.|-+...+.-+..++.+++-..+..-..|+.-+...|.
T Consensus 354 r~IstyAIT---tLLKT--------Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~ 422 (898)
T COG5240 354 RTISTYAIT---TLLKT--------GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL 422 (898)
T ss_pred ccchHHHHH---HHHHc--------CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 655554433 33332 2344455555555554444333334444555555555444333333333333222
Q ss_pred HHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcccc--ccch
Q 002921 527 MAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGF--TQFA 604 (865)
Q Consensus 527 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~ 604 (865)
+ ...-+-.+.+.++|..+.+..++. =+..+..+.+.++... -+ .-.+..++.+++..+..- ..|.
T Consensus 423 ~---eGg~eFK~~~Vdaisd~~~~~p~s------kEraLe~LC~fIEDce--y~--~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 423 Q---EGGLEFKKYMVDAISDAMENDPDS------KERALEVLCTFIEDCE--YH--QITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred h---cccchHHHHHHHHHHHHHhhCchH------HHHHHHHHHHHHhhcc--hh--HHHHHHHHHhcccCCCCCCcchHH
Confidence 2 333345566777777776655332 1222333333333221 11 134455665555444322 3367
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHH
Q 002921 605 QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAF 684 (865)
Q Consensus 605 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~ 684 (865)
..|+++++ |++ .-++.+|..+++.++-...+ ++.++ ++..++.+|++|.+.+||..|.
T Consensus 490 rhIyNR~i--LEN----------------~ivRsaAv~aLskf~ln~~d---~~~~~-sv~~~lkRclnD~DdeVRdrAs 547 (898)
T COG5240 490 RHIYNRLI--LEN----------------NIVRSAAVQALSKFALNISD---VVSPQ-SVENALKRCLNDQDDEVRDRAS 547 (898)
T ss_pred HHHHHHHH--Hhh----------------hHHHHHHHHHHHHhccCccc---cccHH-HHHHHHHHHhhcccHHHHHHHH
Confidence 77777763 332 24566677776655543322 34444 7889999999999999999887
Q ss_pred HHHHHHH
Q 002921 685 ALLGDLA 691 (865)
Q Consensus 685 ~~l~~l~ 691 (865)
.++..+-
T Consensus 548 f~l~~~~ 554 (898)
T COG5240 548 FLLRNMR 554 (898)
T ss_pred HHHHhhh
Confidence 7776554
No 75
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=8.2e-06 Score=87.94 Aligned_cols=418 Identities=16% Similarity=0.148 Sum_probs=231.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCcHH-HHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHH
Q 002921 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (865)
Q Consensus 18 ~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~-~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~ 95 (865)
-.++......|-+ ..|-...++-++.+ .|+-.. ..-.++.+-++.++.+|..|...+.. + -.+...+.+.
T Consensus 52 ~dvvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~-l------~v~~i~ey~~ 123 (734)
T KOG1061|consen 52 PDVVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGC-L------RVDKITEYLC 123 (734)
T ss_pred HHHHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceee-E------eehHHHHHHH
Confidence 3344444555655 77777888887754 666433 33333433357788888888654321 0 1123445677
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCC
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (865)
.-+..++++.++.+|+.++.+++.+...++. ..=..+++.|..++.+++|.+...|+.+|..+.+.-+.....
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~------ 197 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL------ 197 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc------
Confidence 7888899999999999999999988877532 222468888889898999999999999999998875531111
Q ss_pred CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchh
Q 002921 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (865)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 254 (865)
.....+...++..+..-+.--+...++++ ..+.|+.- .....+++.+...+.+.+..+...+.+.+..+....+.
T Consensus 198 -~l~~~~~~~lL~al~ec~EW~qi~IL~~l---~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 -ELNPQLINKLLEALNECTEWGQIFILDCL---AEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred -cccHHHHHHHHHHHHHhhhhhHHHHHHHH---HhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 12244444555555443333333334443 44443322 22344566666666666666666677777766665555
Q ss_pred hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH------------hhhhhH--HHHHHhhccCChhh
Q 002921 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK------------EFLPRL--VPVLLSNMIYADDD 320 (865)
Q Consensus 255 ~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~------------~~~~~l--~~~ll~~l~~~~~d 320 (865)
........+-+.++..+.... ++...++.-+.-+... ..+.++ |..-.+ +.++.. +...+.-
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~--~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~-la~~~nl 348 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK--RPEILKVEIKVFFCKYNDPIYVKLEKLEILIE-LANDANL 348 (734)
T ss_pred HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh--ChHHHHhHhHeeeeecCCchhhHHHHHHHHHH-HhhHhHH
Confidence 333444455555554554444 5555555544433332 111111 110000 000000 0000000
Q ss_pred hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc
Q 002921 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (865)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~ 400 (865)
.+...+ +.+...+ .+-..-+.+..+++.++....+. ...+..+.+.++-
T Consensus 349 ~qvl~E---------------------------l~eYate--vD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~ 397 (734)
T KOG1061|consen 349 AQVLAE---------------------------LKEYATE--VDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLET 397 (734)
T ss_pred HHHHHH---------------------------HHHhhhh--hCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhh
Confidence 000000 0000000 00124566888888888877654 3444444444443
Q ss_pred CCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC-CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH
Q 002921 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (865)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (865)
.. -.....++..+..+...++. ..+.+++.+...+.. .+|..|.+-.|.+|++++.++. ...
T Consensus 398 ~~---~yvvqE~~vvi~dilRkyP~----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~----------a~e 460 (734)
T KOG1061|consen 398 KV---DYVVQEAIVVIRDILRKYPN----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN----------ALE 460 (734)
T ss_pred cc---cceeeehhHHHHhhhhcCCC----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc----------HHH
Confidence 32 12233344555555554443 224455555555543 5678999999999999987653 357
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 002921 480 VLMGLLKRILDTNKRVQEAACSAFATL 506 (865)
Q Consensus 480 ~~~~l~~~l~d~~~~vr~~a~~al~~l 506 (865)
++..+++.+.|....||..-..+...+
T Consensus 461 lL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 461 LLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 778888889998888887655554443
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4e-07 Score=88.11 Aligned_cols=339 Identities=13% Similarity=0.076 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhhhCcc----hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH--HHHHHHHHhc
Q 002921 368 RKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPL 441 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~ 441 (865)
|.-+..|+..++...... ....+.|. ...-++.+ -+.|..+.-+|..+...... ...+ ..-+|.++..
T Consensus 143 qcnaVgCitnLaT~d~nk~kiA~sGaL~pl-trLakskd---irvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsl 216 (550)
T KOG4224|consen 143 QCNAVGCITNLATFDSNKVKIARSGALEPL-TRLAKSKD---IRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSL 216 (550)
T ss_pred Eeeehhhhhhhhccccchhhhhhccchhhh-Hhhcccch---hhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhh
Confidence 444666666666553211 12223333 33445555 67777777777666532211 1111 1257888899
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 002921 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII 521 (865)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i 521 (865)
++..++.+|+.|+.+++.++-.-..- ....+.-+.+++.++..+.|+++.|+-.|..++.++.........-.-..-
T Consensus 217 l~s~d~dvqyycttaisnIaVd~~~R---k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~ 293 (550)
T KOG4224|consen 217 LKSGDLDVQYYCTTAISNIAVDRRAR---KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGS 293 (550)
T ss_pred hccCChhHHHHHHHHhhhhhhhHHHH---HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence 99999999999999999987543210 012334467899999999999999999999999988764322221112234
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcccc
Q 002921 522 LQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGF 600 (865)
Q Consensus 522 ~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~ 600 (865)
+|.+++++++...+.......||..+...-+.+.. -.-..++.+++..+.... + .++ ..+.+++..++.+.....
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~l--I~dagfl~pLVrlL~~~d-n-EeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVL--IADAGFLRPLVRLLRAGD-N-EEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccCcccc--eecccchhHHHHHHhcCC-c-hhhhhhHHHHHHHHhhhhhhhh
Confidence 56677777776666555556666666554333321 112335556666666532 2 223 567778888877554432
Q ss_pred ccch-HHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhH
Q 002921 601 TQFA-QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDV 679 (865)
Q Consensus 601 ~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 679 (865)
..+. ..-+|.+...+... ..++...+-.++..++ +.+.+..++....++|+++....+.+.++
T Consensus 370 ~~i~esgAi~kl~eL~lD~--------------pvsvqseisac~a~La--l~d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDG--------------PVSVQSEISACIAQLA--LNDNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHhhcCchHHHHHHHhcC--------------ChhHHHHHHHHHHHHH--hccccHHHHhhcCCcceeecccCccchhh
Confidence 2221 11244444444421 1233333333333332 23344443332358888888888899999
Q ss_pred HHHHHHHHHHHHhhchhhhHhhH-------HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002921 680 RQSAFALLGDLARVCPVHLQARL-------SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~~~~~-------~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
|..|..+++.++.... ++..+. +.+-..+.+.+.+. ...++.-+.|.+-++++...
T Consensus 434 ~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~L~Rfl~S~----~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 434 RGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGRLARFLASH----ELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred cccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHhCC
Confidence 9999998988876432 111111 22333444445554 56788888899888887654
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.84 E-value=6.2e-07 Score=99.99 Aligned_cols=294 Identities=16% Similarity=0.193 Sum_probs=194.9
Q ss_pred HHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002921 132 LLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (865)
Q Consensus 132 ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (865)
+++.+..++++- ....+..|+..|..+....... ..++.++|-++.++.|+.+.||..|+.++..++..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 456666666663 4567788898888887776553 35689999999999999999999999999988754
Q ss_pred c---cHHhHHhHH-HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhh--hcCCCCHHHHHHHH
Q 002921 211 M---PSALFVSMD-QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ--VNKDTDDDVALEAC 283 (865)
Q Consensus 211 ~---~~~~~~~~~-~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~v~~~a~ 283 (865)
. |..-...++ -++|.|-.++.| ....+|.....+|..++.....++.. ...+-. ..++.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-----~q~~~~~g~~n~~nse------ 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-----TQELRQAGMLNDPNSE------ 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-----HHHHHhcccccCcccc------
Confidence 2 221111122 235677666766 45678888888999888876554321 111100 11222221
Q ss_pred HHHHHhhcc--CCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 002921 284 EFWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (865)
Q Consensus 284 ~~l~~l~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (865)
...+. ......+...+++.+..+ +...
T Consensus 562 ----t~~~~~~~~~~~~L~~~V~~~v~sL---lsd~-------------------------------------------- 590 (1431)
T KOG1240|consen 562 ----TAPEQNYNTELQALHHTVEQMVSSL---LSDS-------------------------------------------- 590 (1431)
T ss_pred ----cccccccchHHHHHHHHHHHHHHHH---HcCC--------------------------------------------
Confidence 00000 001111111122222211 1110
Q ss_pred cccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHh
Q 002921 362 VNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (865)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 440 (865)
.-.+|++-.+.+..|+..+|. ..-+.+++.+..++++.| |..|-+-+..+.-++-..+.. ..-+-++|.+.+
T Consensus 591 --~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 591 --PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred --chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHH
Confidence 013788888889999999987 345678899999999998 999988666655444333321 112347899999
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 002921 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (865)
.+.|+.+.|-..|+.++.-+++.-- ....++.++++.+...+-.|+.=||..+|..+..+.+..
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~l------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGL------LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcc------cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999888887521 356778888889999999999999999999998888765
No 78
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.83 E-value=3.6e-06 Score=90.47 Aligned_cols=322 Identities=14% Similarity=0.127 Sum_probs=196.8
Q ss_pred hhHHHHHHHHHHHHHhchhhhh-----hccHHH-HHHHHHhccC-----CCC--hHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002921 406 WKDREAAVLALGAIAEGCIKGL-----YPHLSE-IVAFLIPLLD-----DKF--PLIRSISCWTLSRFSKFIVQDIGHQN 472 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~-----~~~l~~-i~~~l~~~l~-----d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (865)
.....+.+.++..+.+...+.. ..|.+. +++.++.... +.+ +.+-..+...++.+...++. +.
T Consensus 57 ~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~----~~ 132 (415)
T PF12460_consen 57 SDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP----EK 132 (415)
T ss_pred hHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH----HH
Confidence 6677788888888776654322 233343 5555554331 222 34444444444444444432 12
Q ss_pred chhhHHHHHHHHHH-----HHc-CCC--HHHHHHHHHHHHHHHHHhccch-hhhHHHHHHHHHHHhcccc-hhhHHHHHH
Q 002921 473 GREQFEKVLMGLLK-----RIL-DTN--KRVQEAACSAFATLEEEAAEEL-APRLEIILQHLMMAFGKYQ-RRNLRIVYD 542 (865)
Q Consensus 473 ~~~~~~~~~~~l~~-----~l~-d~~--~~vr~~a~~al~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~-~~~~~~~~~ 542 (865)
.......+...++. .+. +.. ...+......+..++....... .|....+++.++....+.. ...+..+.+
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 212 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQ 212 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 33333444433330 001 111 1123344444555555554333 3567778888888765554 445667888
Q ss_pred HHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHh
Q 002921 543 AIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (865)
Q Consensus 543 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 622 (865)
+++.+++..... +.++.++..+.+.+ ............++.+.-+.+++=..-.|...++...+++.+.+.
T Consensus 213 ~la~LvNK~~~~----~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~---- 283 (415)
T PF12460_consen 213 LLASLVNKWPDD----DDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP---- 283 (415)
T ss_pred HHHHHHcCCCCh----hhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh----
Confidence 888888775443 45566666555555 111122223567777877777776666677777777777766642
Q ss_pred hcccccCCCCCcchhHhhhhhhhHHHHHh--------hhhhhhhccc---chHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002921 623 VDSVAAGAQYDKEFVVCCLDLLSGLAEGL--------GSGIESLVAQ---SNLRDMLLQCCMDDASDVRQSAFALLGDLA 691 (865)
Q Consensus 623 ~~~~~~~~~~~~~~~~~al~~l~~l~~~~--------~~~~~~~~~~---~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 691 (865)
++...+.+.++-++... +.....+..| ..++|.+...++..+.+.|...+.++..++
T Consensus 284 ------------~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 284 ------------ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred ------------hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 22223333344343321 1122222222 347888888888777779999999999999
Q ss_pred hhchh-hhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 002921 692 RVCPV-HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (865)
Q Consensus 692 ~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~ 756 (865)
++.+. -+.+++++++|.+.+.++.+ +.+++.++..++..++...++-+.+|++.+++.+++
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL~~~----~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSLSLP----DADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99985 46799999999999999888 778999999999999988887888899988888765
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.78 E-value=8.1e-05 Score=75.30 Aligned_cols=458 Identities=12% Similarity=0.083 Sum_probs=246.6
Q ss_pred CCChhHHHHHHHHHHHHHHhc----CcCChHHHHHH---------HHHhhccCChhHHhHHHHHHHHHHhhchhhcc---
Q 002921 104 AADRHIRSTVGTIVSVVVQLG----GIAGWLELLQA---------LVTCLDSNDINHMEGAMDALSKICEDIPQVLD--- 167 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~----~~~~w~~ll~~---------l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~--- 167 (865)
+....||..+..++....+.. ..++|..++|. +.-.++++++..|..|+.++..+.++....+.
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345567777777777666543 45788877753 33356788999999999999999887544331
Q ss_pred cCCCCCCCcc-------hhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHH-hH-HhHHHHHHHHHHhhCCCCHHH
Q 002921 168 SDVPGLAECP-------INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-LF-VSMDQYLQGLFLLSNDPSAEV 237 (865)
Q Consensus 168 ~~~~~~~~~~-------~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~-~~-~~~~~~l~~l~~~~~~~~~~~ 237 (865)
+.....|.+. +.+....++-.|.. ..+.+....++|+..++...|-. +. ..+-.+...+-..+.+.+..+
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 1111122211 11222223333333 46677888999999999876632 11 234456667777778888889
Q ss_pred HHHHHHHHHHHHhhchhh--h--------------hhhH------------HHHHHH-----------------Hh----
Q 002921 238 RKLVCAAFNLLIEVRPSF--L--------------EPHL------------RNLFEY-----------------ML---- 268 (865)
Q Consensus 238 r~~~~~~l~~l~~~~~~~--~--------------~~~l------------~~l~~~-----------------l~---- 268 (865)
+..++..+..++...... + .+|. +..++. +.
T Consensus 167 ~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~ 246 (728)
T KOG4535|consen 167 RVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVV 246 (728)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeee
Confidence 999988888877542110 0 0010 011110 00
Q ss_pred -------------hhcC--CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCC
Q 002921 269 -------------QVNK--DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (865)
Q Consensus 269 -------------~~~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~ 333 (865)
.... .....+|.+++.++..++.+ ..+.+-|+-++...+...+.....+
T Consensus 247 ~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~p~------------- 310 (728)
T KOG4535|consen 247 LPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEADPS------------- 310 (728)
T ss_pred cCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCChH-------------
Confidence 0000 01123677777777776664 3444445555444443333322111
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhh-----hh-HH-HHHHhh--------
Q 002921 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-----TL-MP-VIQAKL-------- 398 (865)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~-----~~-~~-~l~~~l-------- 398 (865)
+..-+..++..+....+.+..| .+ .. +-.-++
T Consensus 311 ---------------------------------~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~ 357 (728)
T KOG4535|consen 311 ---------------------------------IQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL 357 (728)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence 2233455555554444311110 00 00 111111
Q ss_pred -ccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC-CChHHHHHHHHHHHhhHHHHhhhhCCCcchhh
Q 002921 399 -SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (865)
Q Consensus 399 -~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (865)
.+.. ...+-+.+.++..+.......+..--....+..+.+.+| .+..+|.+|..+++.+.-|-.. .....+
T Consensus 358 YDs~~---~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l----r~d~~f 430 (728)
T KOG4535|consen 358 YDSEH---PTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL----RQDVIF 430 (728)
T ss_pred hhhcC---CCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch----hhhHHH
Confidence 1122 344556666666665544333332223345555555554 5567888888888766544211 023345
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHHHHHHHhccc---chhhHHHHHHHHHH
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL-------APRLEIILQHLMMAFGKY---QRRNLRIVYDAIGT 546 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~-------~~~~~~i~~~l~~~l~~~---~~~~~~~~~~~l~~ 546 (865)
.......++..+.|..-.+|+.++++++++.+.+-..+ ..+....+..+...-... +.++...+++++++
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 56667777777888778899999999999998763221 223334444444333222 33567788999998
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhcCC--C-CCcchhhHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHH
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQLP--N-SDKDLFPLLECFTSIAQALG--AGFTQFAQPVFQRCINIIQTQQ 619 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~-~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~ 619 (865)
+.+.+..-.. .-...++..-+..+.... . .-+..++++-++|++.+.-. -.-.++.+.+++.+...+.+..
T Consensus 511 llQvlq~i~~--~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 511 LLQFLQPIEK--PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHHHHHHhhh--ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 8876543211 222333322222211110 0 11122678888888876322 2335778899998888877653
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.8e-05 Score=81.63 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=139.6
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh
Q 002921 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 255 (865)
.+.++.|.+-..+.+.-..|...+.+++..+... ..+++ ++..+..+-..+..+....|-.|+.+|..++..+|+.
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~---~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF---VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 4556666666667776677888888888777643 23333 3344555555666777778888999999999888876
Q ss_pred hh---hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCC-----hhhhhhhhhc
Q 002921 256 LE---PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA-----DDDESLVEAE 327 (865)
Q Consensus 256 ~~---~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~-----~~d~~~~~~~ 327 (865)
+. +.++.++. +.+..+...|+..+..-...+. +... -..++.++.-++.+ -+-+......
T Consensus 338 v~vcN~evEsLIs-------d~Nr~IstyAITtLLKTGt~e~----idrL-v~~I~sfvhD~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 338 VSVCNKEVESLIS-------DENRTISTYAITTLLKTGTEET----IDRL-VNLIPSFVHDMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred eeecChhHHHHhh-------cccccchHHHHHHHHHcCchhh----HHHH-HHHHHHHHHhhccCceEEeHHHHHHHHhh
Confidence 42 22333322 2222222222222221111100 0000 00111111101100 0000000000
Q ss_pred -ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcch
Q 002921 328 -EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAW 406 (865)
Q Consensus 328 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 406 (865)
|.. .+.++ .++. +..- ..+.+..++.+.+++..+.+..|+. -.-.+..+..++.+.+
T Consensus 406 Fp~k----~~s~l-~FL~-------~~L~-----~eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDce---- 463 (898)
T COG5240 406 FPSK----KLSYL-DFLG-------SSLL-----QEGGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCE---- 463 (898)
T ss_pred CcHH----HHHHH-HHHH-------HHHH-----hcccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcc----
Confidence 000 00000 0000 0000 0012345666666666666665531 1122333334443322
Q ss_pred hHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHH
Q 002921 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (865)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 486 (865)
.-+.++..|+-+.+..+..-.| ...+..+.+.+-=.|..||.+|..+|++|+-... ..-..+.+...+-+
T Consensus 464 -y~~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~-------d~~~~~sv~~~lkR 533 (898)
T COG5240 464 -YHQITVRILGILGREGPRAKTP--GKYVRHIYNRLILENNIVRSAAVQALSKFALNIS-------DVVSPQSVENALKR 533 (898)
T ss_pred -hhHHHHHHHHHhcccCCCCCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc-------ccccHHHHHHHHHH
Confidence 2344555666665544432211 1134445555444678899999999999887643 22233556667778
Q ss_pred HHcCCCHHHHHHHHHHHHHHH
Q 002921 487 RILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 487 ~l~d~~~~vr~~a~~al~~l~ 507 (865)
+++|.+..||.+|..++..+=
T Consensus 534 clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 534 CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HhhcccHHHHHHHHHHHHhhh
Confidence 899999999999998887653
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.73 E-value=3.1e-05 Score=83.25 Aligned_cols=366 Identities=17% Similarity=0.177 Sum_probs=218.1
Q ss_pred HHHHhccCCCCh---HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHH
Q 002921 436 AFLIPLLDDKFP---LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQEAACSAFATLE 507 (865)
Q Consensus 436 ~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d-----~~~~vr~~a~~al~~l~ 507 (865)
|.++..+.|..+ .-...++.+++.++.. ...++.+++.++..+.. .+...-..++.++..++
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~----------~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~ 71 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS----------PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLL 71 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC----------hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 456666766544 4455566667666653 33344444455444431 24455566677777777
Q ss_pred HHhcc-----chhhhHHH-HHHHHHHHhcccc-------hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhc
Q 002921 508 EEAAE-----ELAPRLEI-ILQHLMMAFGKYQ-------RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 508 ~~~~~-----~~~~~~~~-i~~~l~~~l~~~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 574 (865)
+.... ...-|+.. +++.+++..-... ..+...+...++.++..++.+-. +.++..+...+..
T Consensus 72 ~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~ 146 (415)
T PF12460_consen 72 EKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLS 146 (415)
T ss_pred HhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHcc
Confidence 66522 23445554 7777766653321 23344455555555555554322 2223333333321
Q ss_pred C------CCCCc----chhhHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhh
Q 002921 575 L------PNSDK----DLFPLLECFTSIAQALGAGFT-QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDL 643 (865)
Q Consensus 575 ~------~~~~~----~~~~~~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~ 643 (865)
. ..... .-...+..+..+..++..... |....++..+++..... .+...+..++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~-------------~~~~~~~~~~~~ 213 (415)
T PF12460_consen 147 PKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS-------------EDEFSRLAALQL 213 (415)
T ss_pred ccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC-------------CChHHHHHHHHH
Confidence 0 00011 112444555666666666433 56667777776654432 134556678888
Q ss_pred hhHHHHHhhhhhhhhcccchHHHHHHHHh-cCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCch
Q 002921 644 LSGLAEGLGSGIESLVAQSNLRDMLLQCC-MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETV 722 (865)
Q Consensus 644 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 722 (865)
++.++..+..+- .+.. ++..+.... .......+..++..+.-+.++.--.-.|....++..+...+.++
T Consensus 214 la~LvNK~~~~~--~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~------ 283 (415)
T PF12460_consen 214 LASLVNKWPDDD--DLDE--FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP------ 283 (415)
T ss_pred HHHHHcCCCChh--hHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh------
Confidence 999988753321 1211 333333333 34556666777777766666543333455566666777777664
Q ss_pred hHHHHHHHHHHHHHHhcc--------cccc-----chHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCc-cc
Q 002921 723 SVANNACWAIGELAVKAR--------QEIS-----PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL-VS 788 (865)
Q Consensus 723 ~~~~~a~~~l~~l~~~~~--------~~~~-----~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~ 788 (865)
++...++.+++-++...+ ..+. .+...+++.+...+.... ...+.+...+++.+....|.. +.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~---~~~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD---DEIKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC---hhhHHHHHHHHHHHHhhCCHHHHH
Confidence 677888899998875522 1222 234444555554444442 337788899999999877754 56
Q ss_pred ccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhcc
Q 002921 789 PHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASW 843 (865)
Q Consensus 789 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~ 843 (865)
++++.+++.+++.|+. .|.+.+..++..+..++..+|+.+.+|+..+++.+.+.
T Consensus 361 ~~l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999965 45678999999999999999999999999999987654
No 82
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.3e-05 Score=75.58 Aligned_cols=554 Identities=14% Similarity=0.117 Sum_probs=268.8
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHH---------HHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP---------RLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
+....+|.+|+.++..+.+..+...-- .+...++| .+.-.|+|+++..|..|++.+..+.+...
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~y-------gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk 79 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLY-------GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK 79 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhh-------ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH
Confidence 345678999999999888877642110 11111221 23346789999999999999988875421
Q ss_pred H-----------HhHHh-------HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhchhh-hh-hhHHHHHHHHhhhc
Q 002921 213 S-----------ALFVS-------MDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSF-LE-PHLRNLFEYMLQVN 271 (865)
Q Consensus 213 ~-----------~~~~~-------~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~-~~-~~l~~l~~~l~~~~ 271 (865)
. .+.+. +...-..++..+ ....+.+..++++||..++...|-. ++ .++-.+...+-...
T Consensus 80 ~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i 159 (728)
T KOG4535|consen 80 QFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI 159 (728)
T ss_pred HHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 1 11111 111112222222 3345667788999999988876532 11 23334555555567
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHH--hhccC-ChhhhhhhhhcccC----CC--------CCcc
Q 002921 272 KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL--SNMIY-ADDDESLVEAEEDE----SL--------PDRD 336 (865)
Q Consensus 272 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll--~~l~~-~~~d~~~~~~~~~~----~~--------~~~~ 336 (865)
++.|..|+..++..+..++..... .|-+...+..-- ..+.. .-...++|..-++. .. +.+.
T Consensus 160 ~~~d~~v~vs~l~~~~~~v~t~~~----~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 235 (728)
T KOG4535|consen 160 RHKDVNVRVSSLTLLGAIVSTHAP----LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPC 235 (728)
T ss_pred hcCCCChhhHHHHHHHHHHhcCCC----CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCc
Confidence 788999999999998888765211 111111111000 00000 00112444433221 00 0001
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHH
Q 002921 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (865)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l 416 (865)
-.++|........ ..++|..|.+. .++ |. ...+ ...|..++..+
T Consensus 236 ~~i~~~~~i~~~~-----------~~~s~~~~~~~-~~~-------~~-------------~~~p----s~~rle~~qvl 279 (728)
T KOG4535|consen 236 WLIRLCISIVVLP-----------KEDSCSGSDAG-SAA-------GS-------------TYEP----SPMRLEALQVL 279 (728)
T ss_pred ceeeeeeeeeecC-----------CccccchhhHH-hhh-------cC-------------ccCC----chhHHHHHHHH
Confidence 1111111000000 00123222111 110 10 1112 45788888888
Q ss_pred HHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc------hhhHHHHH-HHHHHHHc
Q 002921 417 GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG------REQFEKVL-MGLLKRIL 489 (865)
Q Consensus 417 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------~~~~~~~~-~~l~~~l~ 489 (865)
..++.+++ ...-++-++...+..++.++.|.++..+..++..+.........|..- ..+....+ ...-...-
T Consensus 280 ~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~Y 358 (728)
T KOG4535|consen 280 TLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALY 358 (728)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhh
Confidence 88887765 234677778888999999999999999988888877765421111110 00111111 00011111
Q ss_pred C-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHHhcccCCchhhHhhhhHH
Q 002921 490 D-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELNQPVYLDILMPP 567 (865)
Q Consensus 490 d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 567 (865)
| ..+..+...|.++.++.......+..--......+..-.++.+.. +...++.+++..+-.-+-... -.+.......
T Consensus 359 Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d-~~fv~~aa~~ 437 (728)
T KOG4535|consen 359 DSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD-VIFVADAANA 437 (728)
T ss_pred hhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh-HHHHHHHHHH
Confidence 2 245667788888888776543333221112222222222222221 222344443322211110000 0122222222
Q ss_pred HHHHHhcCCCCCcc-hhhHHHHHHHHHHHhccccc---cchHHHHH-HHHHHHHHHHHHhhcccccCCCCCcchhHhhhh
Q 002921 568 LIAKWQQLPNSDKD-LFPLLECFTSIAQALGAGFT---QFAQPVFQ-RCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLD 642 (865)
Q Consensus 568 l~~~l~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~---~~~~~i~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~ 642 (865)
+...+.+ ..-. ..+..-++|+|..++-.+.- .+...+.. .+.+.++.......+. ..++..+.+
T Consensus 438 il~sl~d---~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~--------dkV~~navr 506 (728)
T KOG4535|consen 438 ILMSLED---KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADK--------DKVKSNAVR 506 (728)
T ss_pred HHHHhhh---HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh--------hhhhhHHHH
Confidence 2222211 0000 12444556677666544322 12222222 2223334333332222 134556677
Q ss_pred hhhHHHHHhhhh----hhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhh--HhhHHHHHHHHHHhcCCC
Q 002921 643 LLSGLAEGLGSG----IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL--QARLSDFLDIAAKQLNTP 716 (865)
Q Consensus 643 ~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~~~ 716 (865)
.++++...+..- +....+. .+...+..........||-+++.++|++.++-.-.+ .+|.+.+++.+...+.+-
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~-~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEE-SIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHH-HHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 777766654421 2222211 122222222223567789999999999998743222 478888888888877765
Q ss_pred CCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCc
Q 002921 717 KLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHS 761 (865)
Q Consensus 717 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~ 761 (865)
. |..+|.+|+.++..-.. +.++..++.-.+..++.+|..+
T Consensus 586 ~---NFKVRi~AA~aL~vp~~--re~~~d~~~Lsw~~lv~aLi~s 625 (728)
T KOG4535|consen 586 K---NFKVRIRAAAALSVPGK--REQYGDQYALSWNALVTALQKS 625 (728)
T ss_pred c---cceEeehhhhhhcCCCC--cccchhHHhHHHHHHHHHHHHH
Confidence 4 78899998887765433 2344455555556666555444
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.70 E-value=6.2e-07 Score=88.41 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=129.8
Q ss_pred ccccHHHHHHHHHHHHHhhh-Ccchhhhh-------HHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHH
Q 002921 363 NVWNLRKCSAAALDVLSNVF-GDEILPTL-------MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~~~~~~~-------~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i 434 (865)
.+|+.|..|..-+..+.... +....+.+ +..+...+++.. ..+...|+.+++.++...+..+.++.+.+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 46999999999999998877 22222222 244445555555 67788899999999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc--
Q 002921 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA-- 511 (865)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-- 511 (865)
+|.++..+.|++..+|.+|..++..+++.+. +...+ ...+...+.+.++.+|..++..+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999998887653 22344 6677777888999999999999999988776
Q ss_pred -cchhh--hHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhccc
Q 002921 512 -EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (865)
Q Consensus 512 -~~~~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (865)
..+.. .++.+.+.+.+.+.+.+..++..+-.++..+....|..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 44433 46889999999999999999999999999888877754
No 84
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.67 E-value=1.6e-06 Score=85.44 Aligned_cols=184 Identities=20% Similarity=0.139 Sum_probs=130.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh-hCcCCHhHHHHHH---HHHhhhhhCCChhHHHHHHHHHHHHHHhcCc---CChHHHH
Q 002921 61 EGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIK---SELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELL 133 (865)
Q Consensus 61 ~~~~~~~R~~a~~~L~~~i~~~-w~~~~~~~~~~i~---~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~---~~w~~ll 133 (865)
++.+.+.|..|...|++.+..+ -....+.....++ ..+...+.+....+...++.++..++..... ...+.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3678999999999999999887 2223445555555 5555666777788889999999999988633 2346688
Q ss_pred HHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhh-HHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF-LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
|.|++.+.+....++..|..+|..+++.++.. +.+ .+.+..+.++.++.+|..++.++..++...+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-------------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-------------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999987621 344 7788889999999999999999999998766
Q ss_pred ---HHhHH--hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 002921 213 ---SALFV--SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 213 ---~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
..+.. .++.+.+.+...+.|+++++|..+-.++..+.+..|+...
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 33332 3577889999999999999999999999999887776543
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.63 E-value=6.1e-06 Score=92.40 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=186.8
Q ss_pred hHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhC
Q 002921 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (865)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (865)
+++.+...+.+-.. ...|.+|+..|..++....+. ..++.++|.++.++.|+.+.||..|+.++.++.....+. .
T Consensus 423 ~vs~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~-~ 497 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKT--IQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI-P 497 (1431)
T ss_pred eHHHHHHHHHhhhc--chhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC-C
Confidence 34444444443111 556888888888888776653 467889999999999999999999999999887766542 1
Q ss_pred CCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH--hcccchhhHHHHHHHHHH
Q 002921 470 HQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA--FGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~--l~~~~~~~~~~~~~~l~~ 546 (865)
+....-+-+=++|.+-..+.| ....||..-+.+|+.+++..-. | -..-+.+-.. ++..++..
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r----F-le~~q~~~~~g~~n~~nset---------- 562 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR----F-LELTQELRQAGMLNDPNSET---------- 562 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH----H-HHHHHHHHhcccccCccccc----------
Confidence 111222334456666666777 5678999888899888875321 1 1111111111 22222210
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhc-CCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhc
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQ-LPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVD 624 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 624 (865)
.+..-.+ .+...+...+-+.... ..+.++.+ ..+++.+..++..+|..=. -+-++++++..|+.
T Consensus 563 ----~~~~~~~-~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLND------- 628 (1431)
T KOG1240|consen 563 ----APEQNYN-TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLND------- 628 (1431)
T ss_pred ----ccccccc-hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcC-------
Confidence 0000000 1222222111111111 01223334 5677888888888887322 22356666666663
Q ss_pred ccccCCCCCcchhHhhhhhhhHHHHHhhhh-hhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH
Q 002921 625 SVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (865)
Q Consensus 625 ~~~~~~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (865)
.|+.+|..-++.+..+.-.+|.. ..+ .++|+|...+.|..+-|...|++++..+++..- -=.+++-
T Consensus 629 -------kDw~LR~aFfdsI~gvsi~VG~rs~se-----yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~ 695 (1431)
T KOG1240|consen 629 -------KDWRLRGAFFDSIVGVSIFVGWRSVSE-----YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVK 695 (1431)
T ss_pred -------ccHHHHHHHHhhccceEEEEeeeeHHH-----HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHH
Confidence 26777776677666665555554 222 499999999999999999999999999998632 1136666
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002921 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
+++......|-.+ |.-+|..++..+..++....
T Consensus 696 ~i~~~v~PlL~hP----N~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 696 DILQDVLPLLCHP----NLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhhhhheeCc----hHHHHHHHHHHHHHHHhhhh
Confidence 7777777777777 78899999888888877665
No 86
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.56 E-value=1.1e-06 Score=71.06 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH
Q 002921 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (865)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~ 528 (865)
.|..++.++..++..++. ...+|++.+++.++.++.|++.+||..||.++.++++..+..+.+|+++++..|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~-----~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGK-----DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchH-----hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888899998888775 368899999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhHHH
Q 002921 529 FGKYQRRNLRI 539 (865)
Q Consensus 529 l~~~~~~~~~~ 539 (865)
+.+.+..++..
T Consensus 77 ~~D~d~~Vr~~ 87 (97)
T PF12755_consen 77 SADPDENVRSA 87 (97)
T ss_pred HcCCchhHHHH
Confidence 99988777653
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.0011 Score=70.15 Aligned_cols=321 Identities=16% Similarity=0.209 Sum_probs=190.2
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
+..-+.....+.+..+|..|+..|-.+.+. ..+ -..+.....+.+.|....||.+|++.+.-+....
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL-----------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKL-----------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccc-----------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 344477778888889999998888777763 222 2567888889999999999999999999888766
Q ss_pred cHH------hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHH
Q 002921 212 PSA------LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACE 284 (865)
Q Consensus 212 ~~~------~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~ 284 (865)
|.. -....+..+..++..+.|.+..+|..|.+.|+.+-....+.+.+.+. +++.. .|+..
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~-----------lRRkr-- 332 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSR-----------LRRKR-- 332 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhh-----------hhhhh--
Confidence 421 12334566777888888888999999999999888776666554443 22221 11110
Q ss_pred HHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 002921 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (865)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (865)
.--+ ..+. .+. ...|.....|....+ .++ +|+.+
T Consensus 333 ---~ahk---rpk~---l~s----------------~GewSsGk~~~advp----------------see--~d~~~--- 366 (823)
T KOG2259|consen 333 ---TAHK---RPKA---LYS----------------SGEWSSGKEWNADVP----------------SEE--DDEEE--- 366 (823)
T ss_pred ---hccc---chHH---HHh----------------cCCcccCccccccCc----------------hhh--ccccc---
Confidence 0000 0000 000 012222211110000 000 00000
Q ss_pred ccHHHHHHHHHHHHHh-hhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC
Q 002921 365 WNLRKCSAAALDVLSN-VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (865)
Q Consensus 365 ~~~r~~a~~~l~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (865)
...+ .. ..| .+...+.++- ..+|.+|...++.++...+. +....+.++.-.++
T Consensus 367 -------~siI---~sGACG---------A~VhGlEDEf---~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 367 -------ESII---PSGACG---------ALVHGLEDEF---YEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFN 420 (823)
T ss_pred -------cccc---cccccc---------eeeeechHHH---HHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhc
Confidence 0000 00 001 1112233333 78889999888888875553 33446667778888
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 002921 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (865)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~ 523 (865)
|....||..|+.++..++.++. ..+ ..++.+++.+.|.+..||+. +..++..+.-.-...+...+.
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~------i~e----eql~~il~~L~D~s~dvRe~----l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLA------IRE----EQLRQILESLEDRSVDVREA----LRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHhe------ecH----HHHHHHHHHHHhcCHHHHHH----HHHHHHhcCCCcHHHHHHHHH
Confidence 9889999999999988888754 233 44556666777888888875 555555555444455666777
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH
Q 002921 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (865)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (865)
.+++.+..+.. .+..++.|++.+.+..+ ..+-..|..+.+.
T Consensus 487 ~lL~~L~kyPq-Drd~i~~cm~~iGqnH~------~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 487 HLLKNLGKYPQ-DRDEILRCMGRIGQNHR------RLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHhhhCCC-CcHHHHHHHHHHhccCh------hhHHHHHHHHHHh
Confidence 77777765432 12345667776665443 3444455555444
No 88
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00021 Score=73.03 Aligned_cols=307 Identities=13% Similarity=0.126 Sum_probs=186.9
Q ss_pred hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002921 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (865)
Q Consensus 389 ~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (865)
.++........+.. |+.|......+..+.....-.-.+.+.+++..+.....||+..+|..|+..|++.+...+.
T Consensus 217 ~il~q~~ss~ts~~---~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~-- 291 (533)
T KOG2032|consen 217 KILAQLLSSITSEK---ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD-- 291 (533)
T ss_pred HHHhhcccccchhc---ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH--
Confidence 33333333334444 8888887777777654322112366788888888999999999999999999999988654
Q ss_pred CCCcchhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002921 469 GHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (865)
....+...++..++..+-|+ +..|.-.+..+|..+.+.. ...+.+|+-++--.+...+++.+.+.+..++...+.
T Consensus 292 ---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~ 368 (533)
T KOG2032|consen 292 ---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGA 368 (533)
T ss_pred ---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence 46678889999999998875 7889999999999888765 678999999999999999988888888899999999
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhccc
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSV 626 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 626 (865)
++.-.|..... -+.+++...+...+-...+..+ .+..+.+...+..++++ +.+.++...-+.++.
T Consensus 369 L~~l~g~~~e~-~Fte~v~k~~~~lllhl~d~~p---~va~ACr~~~~~c~p~l--~rke~~~~~q~~ld~--------- 433 (533)
T KOG2032|consen 369 LAKLAGGGWEE-FFTEQVKKRLAPLLLHLQDPNP---YVARACRSELRTCYPNL--VRKELYHLFQESLDT--------- 433 (533)
T ss_pred HHHHcCCCchh-hhHHHHHhccccceeeeCCCCh---HHHHHHHHHHHhcCchh--HHHHHHHHHhhhhHH---------
Confidence 99988765442 2334443332222222222222 23333444444444432 122222221111110
Q ss_pred ccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHH----HHhcCCChhHHHHHHHHHHHHHhhchhhhHhhH
Q 002921 627 AAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL----QCCMDDASDVRQSAFALLGDLARVCPVHLQARL 702 (865)
Q Consensus 627 ~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (865)
+.- .++.+....-....++.+. +.-++. ..++..-+.+|..+...-+....+......++.
T Consensus 434 ------~~~-------~~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~ 498 (533)
T KOG2032|consen 434 ------DMA-------RFQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSA 498 (533)
T ss_pred ------hHH-------HHHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 000 0111111100112222221 222222 223334457787777777777766655554443
Q ss_pred H--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 703 S--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 703 ~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
. .+...+....++. .+++++.+..+++.+..
T Consensus 499 d~~qL~~~ls~l~~dp----~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 499 DGLQLRSSLSTLWRDP----RPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHHHHHccCC----CchhHHHHHHHhhhHhh
Confidence 3 3444444445555 67899999999988764
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00022 Score=77.24 Aligned_cols=457 Identities=14% Similarity=0.130 Sum_probs=244.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-HhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHH
Q 002921 20 LLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSEL 98 (865)
Q Consensus 20 ~l~~~~s~~~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~l 98 (865)
+-.++.+.-+. .|+.|-+..-. +.--.+.....-..+..-.+.+.+.+.+.-..+++.-.. .|+........+
T Consensus 18 lks~l~s~~~~-kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-----~P~~a~~avnt~ 91 (734)
T KOG1061|consen 18 LKSQLNSQSKE-KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-----KPDLAILAVNTF 91 (734)
T ss_pred HHHHhhhhhhh-hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-----CchHHHhhhhhh
Confidence 33333333334 66666665544 332334333333444322245677777776666544432 233333334566
Q ss_pred hhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcch
Q 002921 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (865)
Q Consensus 99 l~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 178 (865)
+....++++.+|..+....+. .--+..|.-+...+..++++.++.+|..+..+...+...-++....
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~---l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~---------- 158 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGC---LRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED---------- 158 (734)
T ss_pred hccCCCCCHHHHHHHhhceee---EeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc----------
Confidence 666778899999876544433 3335678889999999999999999999988888876654443322
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH-HhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
..+++.+...+.|.++.|...|+.++..+.+..++ ........++..++..+..-++ =.-+.+|..++...|+.-
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~- 234 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDS- 234 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCc-
Confidence 56778888888899999999999999999876543 1112222333344433322111 112445555665555432
Q ss_pred hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhh---------hhcc
Q 002921 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV---------EAEE 328 (865)
Q Consensus 258 ~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~---------~~~~ 328 (865)
.-..++++.+...+++....+...+..++...... .......++.++-+-++..+...+ +.+-. ...|
T Consensus 235 ~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 235 REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence 23345566655556666655555555555444333 111111122222222222222211 11000 0000
Q ss_pred cCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhH
Q 002921 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKD 408 (865)
Q Consensus 329 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 408 (865)
. .-...++-+|...+ | + -.+...-.+++..+ ..+..++.++.-+.++-..-+ ...
T Consensus 312 ~----~~~~~~~~Ff~kyn------------D--P-iYvK~eKleil~~l---a~~~nl~qvl~El~eYatevD---~~f 366 (734)
T KOG1061|consen 312 E----ILKVEIKVFFCKYN------------D--P-IYVKLEKLEILIEL---ANDANLAQVLAELKEYATEVD---VDF 366 (734)
T ss_pred H----HHHhHhHeeeeecC------------C--c-hhhHHHHHHHHHHH---hhHhHHHHHHHHHHHhhhhhC---HHH
Confidence 0 00001111111110 0 0 01233333444333 233445556666666666666 777
Q ss_pred HHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
-..++.++|.++....+. +..++.++..++-....+-..++..+..+...++ +.++.++..+-..+
T Consensus 367 vrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP---------~~~~~vv~~l~~~~ 432 (734)
T KOG1061|consen 367 VRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP---------NKYESVVAILCENL 432 (734)
T ss_pred HHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC---------Cchhhhhhhhcccc
Confidence 778899999988655432 6677778887775555555556666655555543 23355566665555
Q ss_pred cC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002921 489 LD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (865)
Q Consensus 489 ~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 549 (865)
.+ .++..|.+-.|.++...+...+ .+.+++.+++.+.+....++ ++.++..++
T Consensus 433 ~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vq---l~LLta~ik 486 (734)
T KOG1061|consen 433 DSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQ---LELLTAAIK 486 (734)
T ss_pred cccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHH---HHHHHHHHH
Confidence 54 3677888888888877765432 34455555555544443343 344444444
No 90
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00021 Score=75.42 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=173.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc---CCch-hh
Q 002921 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPH-EN 298 (865)
Q Consensus 223 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~---~~~~-~~ 298 (865)
...+.....+.+..+|..|.+.|..+.+. -.+ -..+.......+.|.+++||..|+..+.-.+.. +... ..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccc--ccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 33466666788899999999999988872 211 234555666678899999999997765544333 1010 01
Q ss_pred HHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002921 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (865)
Q Consensus 299 ~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l 378 (865)
-+...+..+..+...+. +.+|.+|..|.+.|+.+
T Consensus 275 e~kl~D~aF~~vC~~v~----------------------------------------------D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVR----------------------------------------------DRSLSVRVEAAKALGEF 308 (823)
T ss_pred hhhhHHHHHHHHHHHHh----------------------------------------------cCceeeeehHHHHhchH
Confidence 11122222222211111 13477899999999887
Q ss_pred HhhhCcchhhhhHHHHHHhhccCCCcchh---HHHHHHHHHHHHHhch-------hhhhhccHHHHHH-----HHHhccC
Q 002921 379 SNVFGDEILPTLMPVIQAKLSASGDEAWK---DREAAVLALGAIAEGC-------IKGLYPHLSEIVA-----FLIPLLD 443 (865)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~r~~a~~~l~~l~~~~-------~~~~~~~l~~i~~-----~l~~~l~ 443 (865)
.....+-+.+++-..+...+. - |+ .|-..+..=|..+.+- .+.....-..++| .++.++.
T Consensus 309 ~~vSee~i~QTLdKKlms~lR--R---kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 309 EQVSEEIIQQTLDKKLMSRLR--R---KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHhHHHHHHHHHHHHHhhhhh--h---hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 665544333333333332111 1 22 1111222222111110 1111112223443 3778899
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 002921 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (865)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~ 523 (865)
|.--.||.+|...++.++..- ..+-...+..++.+++|....||..|..+|..+..... .-+..++
T Consensus 384 DEf~EVR~AAV~Sl~~La~ss---------P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~ 449 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSS---------PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLR 449 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---------CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHH
Confidence 999999999999999888642 34456778889999999999999999999999887632 1234455
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc
Q 002921 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA 598 (865)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 598 (865)
.++..|.+...+++..+.+.++ ...-. +..-+..++..+++.+...+.+. ..+..|++.+++..+.
T Consensus 450 ~il~~L~D~s~dvRe~l~elL~----~~~~~--d~~~i~m~v~~lL~~L~kyPqDr---d~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 450 QILESLEDRSVDVREALRELLK----NARVS--DLECIDMCVAHLLKNLGKYPQDR---DEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH----hcCCC--cHHHHHHHHHHHHHHhhhCCCCc---HHHHHHHHHHhccChh
Confidence 5566666666666654444443 32221 22456666667777776654222 2678888888876654
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.45 E-value=2.7e-07 Score=66.77 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhh
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (865)
|.+|.+|+++||.+++..++.+.++.+.+++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999975
No 92
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.44 E-value=0.0044 Score=68.94 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCC
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (865)
+++....-+...++..|+..+ -.++.+..-+++++ ...|..|+..++.+-. ...++.+++.+.++++|++
T Consensus 71 lKrL~ylYl~~yak~~P~~~l-LavNti~kDl~d~N---~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ 140 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELAL-LAVNTIQKDLQDPN---EEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPH 140 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHH-HHHHHHHhhccCCC---HHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCc
Confidence 677777777777777775443 34556666677777 9999999999988743 4567788999999999999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (865)
++||..|+.++..+-+.- ..+++. ....+...+.|++|.|...|..++..+...
T Consensus 141 ayVRk~Aalav~kly~ld---------~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 141 AYVRKTAALAVAKLYRLD---------KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHHhcC---------HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999999999998877642 223333 344555566799999999999988877665
No 93
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.43 E-value=0.00021 Score=75.99 Aligned_cols=307 Identities=16% Similarity=0.182 Sum_probs=175.2
Q ss_pred cchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcc----cchhhH-HHHHHHHHH
Q 002921 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK----YQRRNL-RIVYDAIGT 546 (865)
Q Consensus 472 ~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~----~~~~~~-~~~~~~l~~ 546 (865)
+..++...++..++..+.-+...--+..+.|+.+++...++.+.|+...+++.|...+.. ++.+.. ...+++++.
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 456778899999999887532222345667788888888888999988888888887743 333333 367999999
Q ss_pred HHHHhcccCC--chhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHhh
Q 002921 547 LADAVGFELN--QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKV 623 (865)
Q Consensus 547 l~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (865)
+++.....-. -..+.+.++|.+...+++.- ..-+..++..++.+..... ....+....+++.++ ....+.
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV--~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll----~p~lWe- 171 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDV--QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL----SPALWE- 171 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT----SGGGGG-
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc----Ccchhc-
Confidence 9886543210 01467788888888887521 1122567777777776655 334444444444442 111000
Q ss_pred cccccCCCCCcchhHhhhhhhhHHHHHhhhhhh--hhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh-hhHh
Q 002921 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE--SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQA 700 (865)
Q Consensus 624 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~ 700 (865)
...-+-....++.++++.-+..+. ..+. .++.+.-+++..+..+ ..++.++..++.+++. .+.|
T Consensus 172 ---------~~gniPalvrLL~a~i~k~~~~i~~~~~l~--~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~ 238 (435)
T PF03378_consen 172 ---------RRGNIPALVRLLQAYIKKDPSFIVANNQLE--PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEP 238 (435)
T ss_dssp ---------STTTHHHHHHHHHHHHHHHGGG----S-CH--HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGG
T ss_pred ---------cCCCcCcHHHHHHHHHHhCchhhcchhhHH--HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHH
Confidence 001122344455555555444432 2333 3777777777765544 4689999999999985 6899
Q ss_pred hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc--------cccc-hHHHHHHH-HHHHhcCchhhhhhHHH
Q 002921 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ--------EISP-IVMTVVLC-LVPILKHSEELNKSLIE 770 (865)
Q Consensus 701 ~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--------~~~~-~~~~il~~-l~~~l~~~~~~~~~~~~ 770 (865)
|++.++..++..++.++ .....+..+..++.++...+. .+++ ....+++. +++-+.+-. ...-|.
T Consensus 239 yl~~I~~lll~RLq~sk---T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~--~~~erK 313 (435)
T PF03378_consen 239 YLKQIFTLLLTRLQSSK---TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVS--GPIERK 313 (435)
T ss_dssp GHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG----SHHHHH
T ss_pred HHHHHHHHHHHHHhhCC---cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcC--Ccchhh
Confidence 99999999999999775 445555555566655544432 1222 22333332 344333311 122345
Q ss_pred HHHHHHHhhhhhCCCccc---ccHHHHHHHHHHHhc
Q 002921 771 NSAITLGRLAWVCPELVS---PHMEHFMQPWCIALS 803 (865)
Q Consensus 771 ~~~~~l~~l~~~~~~~~~---~~~~~~l~~~~~~l~ 803 (865)
.++..++++...++.... ...+.++..++..+.
T Consensus 314 i~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 314 ICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 566667777755444332 234556666665554
No 94
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0034 Score=68.18 Aligned_cols=496 Identities=16% Similarity=0.142 Sum_probs=236.1
Q ss_pred hhhCCChhHHHHHHHHHHHHHHhc------CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCC
Q 002921 101 CLGAADRHIRSTVGTIVSVVVQLG------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (865)
Q Consensus 101 ~l~~~~~~vr~~~a~~l~~i~~~~------~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (865)
.+++++-.-|+ ...++..|.... +...-.+++-.+.++.++.++..|.....++.++..-..+.
T Consensus 29 ~fnespvn~r~-c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv--------- 98 (865)
T KOG1078|consen 29 TFNESPVNPRK-CRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV--------- 98 (865)
T ss_pred hhcCCCCCHHH-HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh---------
Confidence 44554333333 344555555432 33455778888999999999888887766665554332221
Q ss_pred CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchh
Q 002921 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (865)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 254 (865)
--+...+.+-.+..++..|..|+.+|..++... ....++.++... +-+....++..++-.=..+.....+
T Consensus 99 ----iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~---m~~~iery~kqa---ivd~~~avSsaalvss~hll~~~~~ 168 (865)
T KOG1078|consen 99 ----IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT---MLQAIERYMKQA---IVDKNPAVSSAALVSSYHLLPISFD 168 (865)
T ss_pred ----hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc---hhHHHHHHHHhH---eeccccccchHHHHHHhhhhcccHH
Confidence 122334444445557788888888888876532 233333444333 2333333333332222222222333
Q ss_pred hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002921 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (865)
Q Consensus 255 ~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (865)
..+.+...+.+ ...+.+.-++..|+.++..+... . +-.+.+++..+.+.-..
T Consensus 169 ~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~--d----rla~sklv~~~~~~~~~------------------ 220 (865)
T KOG1078|consen 169 VVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKN--D----RLAVSKLVQKFTRGSLK------------------ 220 (865)
T ss_pred HHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhh--h----HHHHHHHHHHHcccccc------------------
Confidence 22222222222 22233334567777777776443 1 11122222222110000
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHH
Q 002921 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVL 414 (865)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~ 414 (865)
+....|-.-+.+..+++.. ......+++++..++.+.. -.+-..|..
T Consensus 221 -------------------------~~~A~~~lir~~~~~l~~~-----~~~~s~~~~fl~s~l~~K~---emV~~EaAr 267 (865)
T KOG1078|consen 221 -------------------------SPLAVCMLIRIASELLKEN-----QQADSPLFPFLESCLRHKS---EMVIYEAAR 267 (865)
T ss_pred -------------------------chhHHHHHHHHHHHHhhhc-----ccchhhHHHHHHHHHhchh---HHHHHHHHH
Confidence 0001111112222333222 2334467888888887765 445555566
Q ss_pred HHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHH
Q 002921 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR 494 (865)
Q Consensus 415 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~ 494 (865)
++..+....+..+.| .+..+-..+..|.+.+|.+|..+|.+++-..+... ...-..+-..+.|.+
T Consensus 268 ai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v---------~~cN~elE~lItd~N-- 332 (865)
T KOG1078|consen 268 AIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV---------TVCNLDLESLITDSN-- 332 (865)
T ss_pred HHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc---------cccchhHHhhhcccc--
Confidence 666655544444444 56667778889999999999999999998765321 011112233344554
Q ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhc
Q 002921 495 VQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 495 vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 574 (865)
|.-|..++..+++...+. -.+.++..+.....+.+.+.+..+.+++.+++...+.. -..+|+.+...+.+
T Consensus 333 -rsIat~AITtLLKTG~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k------~~~~m~FL~~~Lr~ 402 (865)
T KOG1078|consen 333 -RSIATLAITTLLKTGTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK------HTVMMNFLSNMLRE 402 (865)
T ss_pred -cchhHHHHHHHHHhcchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH------HHHHHHHHHHHHHh
Confidence 333455555666554322 23334444444443333333334455666665544332 23344555555554
Q ss_pred CCCCCcc-hhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhh
Q 002921 575 LPNSDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS 653 (865)
Q Consensus 575 ~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~ 653 (865)
.+ .-+ ...+++++..++......=.+-+..++. .+.+ -++..-+...++-+....+.
T Consensus 403 eG--g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe----fIED----------------ce~~~i~~rILhlLG~EgP~ 460 (865)
T KOG1078|consen 403 EG--GFEFKRAIVDAIIDIIEENPDSKERGLEHLCE----FIED----------------CEFTQIAVRILHLLGKEGPK 460 (865)
T ss_pred cc--CchHHHHHHHHHHHHHHhCcchhhHHHHHHHH----HHHh----------------ccchHHHHHHHHHHhccCCC
Confidence 22 111 1356666666655433321111222222 1121 11111111222222211111
Q ss_pred hhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH
Q 002921 654 GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIG 733 (865)
Q Consensus 654 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~ 733 (865)
.. .| .....+++....=.+..||.+|+.++..+.... ... .+.+...+.+++.+. +.++|+.|...+.
T Consensus 461 a~---~P-skyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l---~~sI~vllkRc~~D~----DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 461 AP---NP-SKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VVL---LPSILVLLKRCLNDS----DDEVRDRATFYLK 528 (865)
T ss_pred CC---Cc-chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCc---cccHHHHHHHHhcCc----hHHHHHHHHHHHH
Confidence 11 11 112233333332356677888877777776322 122 233444555666666 6678888777776
Q ss_pred HHH
Q 002921 734 ELA 736 (865)
Q Consensus 734 ~l~ 736 (865)
.+-
T Consensus 529 ~l~ 531 (865)
T KOG1078|consen 529 NLE 531 (865)
T ss_pred Hhh
Confidence 665
No 95
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.41 E-value=5.8e-07 Score=81.90 Aligned_cols=136 Identities=21% Similarity=0.334 Sum_probs=99.5
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhccc--------CCCCCCCcc
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS--------DVPGLAECP 177 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~--------~~~~~~~~~ 177 (865)
++.||++++.+++.|+.+++|..||++++.+.+.+++ ++.....++.+|..+.+++...... +....+...
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999988 5788889999999999887641000 000011123
Q ss_pred hhhhHHHHHHHhcCCC----HHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002921 178 INIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 245 (865)
.+.++..+.+.+.... .++...+++|+.+++.+.+...... ..+++.++..+.++ +.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4556666666665532 7899999999999999876554433 33788888888654 4477788775
No 96
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.37 E-value=0.00033 Score=78.24 Aligned_cols=373 Identities=14% Similarity=0.129 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccC
Q 002921 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~ 316 (865)
+-..++..|..+++...-..+-.-..+++.++..++..+.++...++.|+..++-....+..+. -..+++.+.+.+..
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s 342 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcC
Confidence 3345677777787765444333345677777778888888888889999888865422333332 23455665555443
Q ss_pred ChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC--cch-hhhhHHH
Q 002921 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--DEI-LPTLMPV 393 (865)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~--~~~-~~~~~~~ 393 (865)
..+ ..+..+..+|..++..-. ..+ -..++|.
T Consensus 343 ~~~----------------------------------------------~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPk 376 (708)
T PF05804_consen 343 ENE----------------------------------------------DLVNVALRLLFNLSFDPELRSQMVSLGLIPK 376 (708)
T ss_pred CCH----------------------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHH
Confidence 211 146667777766654432 122 2345677
Q ss_pred HHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhcc-CCCChHHHHHHHHHHHhhHHHHhhhhCCC
Q 002921 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (865)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 471 (865)
+...+.+++ .+..++.+|..++..-. +.+..+- +.+|.+...+ ..+++.+...++.++.+++..-...
T Consensus 377 Lv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna---- 446 (708)
T PF05804_consen 377 LVELLKDPN-----FREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA---- 446 (708)
T ss_pred HHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH----
Confidence 777776554 45668888888765322 1111111 2455555543 3456666655555555554332110
Q ss_pred cchhhH-HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHh---ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002921 472 NGREQF-EKVLMGLLKR-ILDTNKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 472 ~~~~~~-~~~~~~l~~~-l~d~~~~vr~~a~~al~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (865)
.... ...++.+++. ++..++- ....+.++..+- +..+.+|+..+ ...+...+. -...++++|.
T Consensus 447 --qlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L----~~~v~~~~~--ee~~vE~LGi 514 (708)
T PF05804_consen 447 --QLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDL----AKIVSSGDS--EEFVVECLGI 514 (708)
T ss_pred --HHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHH----HHHhhcCCc--HHHHHHHHHH
Confidence 0000 1223333332 2222221 123444444432 22344454444 444544433 3466888888
Q ss_pred HHHHhcccCCchhhHh--hhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHh
Q 002921 547 LADAVGFELNQPVYLD--ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLAK 622 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~ 622 (865)
+++-.-+......++. .++|.+.+.+......+..+..++-.+|.++.. +...+.+ ..+++.++..|.....
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqe-- 590 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQE-- 590 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCc--
Confidence 8875323221113443 678888888865433332224445555555431 2223333 2567777777776431
Q ss_pred hcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 002921 623 VDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (865)
Q Consensus 623 ~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 694 (865)
|.+++..++-++..++.+ +......+.+..+...++..++|++.+||..|=.+++-++.+-
T Consensus 591 ----------DdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 591 ----------DDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ----------hHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 456666666666666665 3333334443458889999999999999988877777777654
No 97
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.35 E-value=1.5e-06 Score=75.89 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=88.3
Q ss_pred hHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002921 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (865)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (865)
+++.+.+.+.+++ |..|+.++.+++.++...++.....+. .+++.+.+.+.|+++.++..|++++++++...+..
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~- 83 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN- 83 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-
Confidence 5667777788888 999999999999999876544444444 68889999999999999999999999998764321
Q ss_pred CCCcchhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 469 GHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 469 ~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
..... ..+++.+++.+++.+..++..++.++.+++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12222 347899999999989999999999999876
No 98
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.01 Score=64.27 Aligned_cols=405 Identities=16% Similarity=0.158 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCCcHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHH
Q 002921 14 FNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (865)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~ 91 (865)
-.++-+.|+ +.+.+ ++-.|-+.+-. +.+-..+...+.+|+.-- ++.+- .||+.+-.+|+-++...-
T Consensus 22 ~~~ik~~Le---k~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~--------elKKLly~ywE~vPKt~~ 89 (948)
T KOG1058|consen 22 EDEIKEKLE---KGDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNH--------ELKKLLYYYWELVPKTDS 89 (948)
T ss_pred hHHHHHHHh---cCChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCch--------HHHHHHHHHHHHccccCC
Confidence 344555444 46665 66666665544 444444555555555321 12232 367777788886543211
Q ss_pred --HHH------HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 92 --QYI------KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 92 --~~i------~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
..+ -+.+-+-|.+|+..+|-. .+.-+++...++-...++|.+.+++.+...-+|..|..++..|.+.+.
T Consensus 90 dgkl~~EMILvcna~RkDLQHPNEyiRG~---TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~ 166 (948)
T KOG1058|consen 90 DGKLLHEMILVCNAYRKDLQHPNEYIRGS---TLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE 166 (948)
T ss_pred CcccHHHHHHHHHHHhhhccCchHhhcch---hhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh
Confidence 111 123334566899999875 566677776677788899999999999999999999999999988754
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~ 243 (865)
..+. + .++++..++ .++.++..++.|+-.|...- |+.-..+ +...+.-+.+-++.......+
T Consensus 167 ~L~p-D--------apeLi~~fL--~~e~DpsCkRNAFi~L~~~D---~ErAl~Y----l~~~idqi~~~~~~LqlViVE 228 (948)
T KOG1058|consen 167 HLIP-D--------APELIESFL--LTEQDPSCKRNAFLMLFTTD---PERALNY----LLSNIDQIPSFNDSLQLVIVE 228 (948)
T ss_pred hhcC-C--------hHHHHHHHH--HhccCchhHHHHHHHHHhcC---HHHHHHH----HHhhHhhccCccHHHHHHHHH
Confidence 4331 1 244444332 24567777777766554432 1111111 222222122223334444444
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhh
Q 002921 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (865)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~ 323 (865)
.+...+...|..-..|+. ++...+...+..++.+|-..+..+ ...+..+++....++..+... .
T Consensus 229 ~Irkv~~~~p~~~~~~i~----~i~~lL~stssaV~fEaa~tlv~l---S~~p~alk~Aa~~~i~l~~ke-----s---- 292 (948)
T KOG1058|consen 229 LIRKVCLANPAEKARYIR----CIYNLLSSTSSAVIFEAAGTLVTL---SNDPTALKAAASTYIDLLVKE-----S---- 292 (948)
T ss_pred HHHHHHhcCHHHhhHHHH----HHHHHHhcCCchhhhhhcceEEEc---cCCHHHHHHHHHHHHHHHHhc-----c----
Confidence 454444444443333444 334444555666665554443333 234556666666665554210 0
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh--CcchhhhhHHHHHHhhccC
Q 002921 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSAS 401 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~~~~l~~~l~~~ 401 (865)
| -+++- -.++++.... ...++..+.--+...++++
T Consensus 293 ----------------------------d------------nnvkl---Ivldrl~~l~~~~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 293 ----------------------------D------------NNVKL---IVLDRLSELKALHEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred ----------------------------C------------cchhh---hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcc
Confidence 0 01221 2223333222 2344555555555677888
Q ss_pred CCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc-------CCCChHHHHHHHHHHHhhHHHHhhhhCCCcch
Q 002921 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-------DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (865)
Q Consensus 402 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (865)
+ ...|.-++...-.+++. ..+.+++..+-+.+ .|.+...|..-..++..++..++
T Consensus 330 d---ldvr~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--------- 391 (948)
T KOG1058|consen 330 D---LDVRSKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--------- 391 (948)
T ss_pred c---ccHHHHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh---------
Confidence 8 88888888766555542 23444555444443 23455677777777777666554
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 532 (865)
.+-..+++.+++.+.|.++.-.. .+-.|++.+-+.+...-..++..++..+...
T Consensus 392 ~~aatvV~~ll~fisD~N~~aas----~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i 445 (948)
T KOG1058|consen 392 EVAATVVSLLLDFISDSNEAAAS----DVLMFVREAIEKFPNLRASIIEKLLETFPQI 445 (948)
T ss_pred HHHHHHHHHHHHHhccCCHHHHH----HHHHHHHHHHHhCchHHHHHHHHHHHhhhhh
Confidence 45678999999999998754333 3333444443333333345666666655443
No 99
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0053 Score=66.79 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 002921 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
...+++.+-.++.+.+..|...|..++..+-...+..+.+ -+..+-.++..+....|-++..+|..++...|....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 4567777888888888888888877777766554444444 233344445677788999999999999998887653
Q ss_pred hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 258 ~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
.--.++-+ ...+.+..+...|+..+..-
T Consensus 319 ~cN~elE~----lItd~NrsIat~AITtLLKT 346 (865)
T KOG1078|consen 319 VCNLDLES----LITDSNRSIATLAITTLLKT 346 (865)
T ss_pred ccchhHHh----hhcccccchhHHHHHHHHHh
Confidence 22222222 22344444555555544443
No 100
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.013 Score=62.99 Aligned_cols=257 Identities=14% Similarity=0.167 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChH-HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~-~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (865)
...||+++|.++-.+.+..+.-.-+ ++...+.+++++.+..+..++...+..+++..++..... ++.-+..
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~--------~~~avs~ 232 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTC--------LPLAVSR 232 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhh--------HHHHHHH
Confidence 3456666666666666663221111 344555666666555555555555566665555433211 1111222
Q ss_pred HHHHhc-------C------CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC--CHHHH-----H-HHHH
Q 002921 185 LLQFFQ-------S------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP--SAEVR-----K-LVCA 243 (865)
Q Consensus 185 l~~~l~-------~------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r-----~-~~~~ 243 (865)
+.+... | +.|-+...++..|..+=.--.......+-.+++.++...+++ ..++. . -.++
T Consensus 233 L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFe 312 (938)
T KOG1077|consen 233 LSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFE 312 (938)
T ss_pred HHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHH
Confidence 222211 1 334444444444443310000111222333444444443321 01111 1 1223
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhh
Q 002921 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (865)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~ 323 (865)
++.......++. ..+..-+..+.+.+.+.+..+|..+++.+..++..+-....++.|.+.++..+ .. +
T Consensus 313 aI~l~~h~D~e~--~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sL----kt-e----- 380 (938)
T KOG1077|consen 313 AISLAIHLDSEP--ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSL----KT-E----- 380 (938)
T ss_pred HHHHHHHcCCcH--HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHh----cc-c-----
Confidence 333333222221 22334444555566777778899999988888777555667777766665543 10 0
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCC
Q 002921 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 403 (865)
.+-++|+.|.++|..++..-.. ..++.-+.+++.+.+
T Consensus 381 ---------------------------------------rDvSirrravDLLY~mcD~~Na---k~IV~elLqYL~tAd- 417 (938)
T KOG1077|consen 381 ---------------------------------------RDVSIRRRAVDLLYAMCDVSNA---KQIVAELLQYLETAD- 417 (938)
T ss_pred ---------------------------------------cchHHHHHHHHHHHHHhchhhH---HHHHHHHHHHHhhcc-
Confidence 1125899999999888876543 344555666777788
Q ss_pred cchhHHHHHHHHHHHHHhchhhhh
Q 002921 404 EAWKDREAAVLALGAIAEGCIKGL 427 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~ 427 (865)
+..|+.-..-.+-+++.....+
T Consensus 418 --~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 418 --YSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred --hHHHHHHHHHHHHHHHHhcCCc
Confidence 8999988887888887665444
No 101
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.16 E-value=7.9e-05 Score=69.47 Aligned_cols=133 Identities=18% Similarity=0.332 Sum_probs=103.7
Q ss_pred ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHH
Q 002921 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (865)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l 223 (865)
++.+|..++.+++.++..++.. ++..+|.+...|.|+++.||..|+.++..++... +...-+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhh
Confidence 4678999999999999988754 3677999999999999999999999999998542 222223344
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhh-chhhhhhhHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHhhc
Q 002921 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (865)
Q Consensus 224 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~-----~~~~~v~~~a~~~l~~l~~ 291 (865)
..+...+.|+++++|..|..+|..+... .+..+..++++++..+-.... ..+.+-+...+.++.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 5666677899999999999999999887 777777777777776554433 2456677888888877765
No 102
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.13 E-value=0.00028 Score=65.79 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=97.2
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
++.+|..+..+++.++... ++....+++.+...+.++++.+|..|+.+|..+...-. . ..-+.++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--i---------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--I---------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--e---------eehhhhhHHH
Confidence 4789999999999999875 45667788999999999999999999999999886411 1 1225666888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcc-ccHHhHHhHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHH
Q 002921 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLI 249 (865)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~-----~~~~~r~~~~~~l~~l~ 249 (865)
+..+.|++++||..|..++..+... .|..+...++.++..+-....+ .+.+-|...+..+....
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999876 5566666666665555433221 23344445555544444
No 103
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.027 Score=61.09 Aligned_cols=282 Identities=15% Similarity=0.133 Sum_probs=151.9
Q ss_pred cccHHHHHHHHHHHHHhhhCc--------chhh-hhHHHHHH-hhccCCCcchhHHHHHHHHHHHHHhchh--hhhhccH
Q 002921 364 VWNLRKCSAAALDVLSNVFGD--------EILP-TLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCI--KGLYPHL 431 (865)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~--------~~~~-~~~~~l~~-~l~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l 431 (865)
+|..-..|...+..+++..+. +..+ .++..+.. ++.+.- .....+...+..+..+..... ..-.+++
T Consensus 453 swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv-~~h~h~lVqLlfmE~ivRY~kff~~esq~i 531 (980)
T KOG2021|consen 453 SWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQV-LAHDHELVQLLFMELIVRYNKFFSTESQKI 531 (980)
T ss_pred hHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccc-ccCCchHHHHHHHHHHHHHHHHHhcchhhh
Confidence 466667788888888877632 1111 12222222 222211 002344555555555555221 1112455
Q ss_pred HHHHHHHHh--ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHH------------HHH
Q 002921 432 SEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR------------VQE 497 (865)
Q Consensus 432 ~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~------------vr~ 497 (865)
+.++...+. ++.+.+.+||.+|...+.++.+.++.. ..++.+.++..+-..++.+.+. -+.
T Consensus 532 p~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq-----lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddql 606 (980)
T KOG2021|consen 532 PLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ-----LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQL 606 (980)
T ss_pred HHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccc
Confidence 555555443 467789999999999999999988753 4567778877777776322111 122
Q ss_pred HHHHHHHHHHHHh-----------ccchhhhHHH-HHHHHHHHhcccc-hhh----HHHHHHHHHHHHHHhcccCCc---
Q 002921 498 AACSAFATLEEEA-----------AEELAPRLEI-ILQHLMMAFGKYQ-RRN----LRIVYDAIGTLADAVGFELNQ--- 557 (865)
Q Consensus 498 ~a~~al~~l~~~~-----------~~~~~~~~~~-i~~~l~~~l~~~~-~~~----~~~~~~~l~~l~~~~~~~~~~--- 557 (865)
....++|.++... ...+.|.+.+ ++..+...+.+.. .++ ....+-+++++++........
T Consensus 607 yIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~q 686 (980)
T KOG2021|consen 607 YIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQ 686 (980)
T ss_pred eeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhc
Confidence 2233333332211 1122333222 2222222333222 222 224556677776644332210
Q ss_pred ---hhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 002921 558 ---PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK 634 (865)
Q Consensus 558 ---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 634 (865)
...+..++..++..+......++-..++-.+++.+...+|+...||+++.++.+++-.. -.
T Consensus 687 vg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d----------------~k 750 (980)
T KOG2021|consen 687 VGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD----------------LK 750 (980)
T ss_pred ccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC----------------HH
Confidence 02233444444444444443343345677789999999999999999998887653111 11
Q ss_pred chhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHH
Q 002921 635 EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQ 670 (865)
Q Consensus 635 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~ 670 (865)
+ ...-+..++.++..++.+..+++.+ ++|.+..
T Consensus 751 E-mvdfl~flsQLihkfk~~~~~ilnq--mlppll~ 783 (980)
T KOG2021|consen 751 E-MVDFLGFLSQLIHKFKTDCYQILNQ--MLPPLLN 783 (980)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 2 2346677888888888888888887 5554443
No 104
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0004 Score=75.82 Aligned_cols=229 Identities=16% Similarity=0.165 Sum_probs=158.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchh
Q 002921 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPV 559 (865)
Q Consensus 480 ~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (865)
.++..+..+.|+.+.+|..+...+..+++.-...-.-.-..++...+..+.+.++.+-..++..+..++..
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------- 798 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------- 798 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---------
Confidence 35566667888889999999999999998653333334567888888899888888777777777777764
Q ss_pred hHhhhhHHHHHHHhcCCCCC-cc-hhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh
Q 002921 560 YLDILMPPLIAKWQQLPNSD-KD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (865)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~~-~~-~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (865)
|-+.++|.+.+.-.+..+.. .+ +..+=+++..++.+.|+-+..|...++..++..++. +|..+|
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre--------------pd~~~R 864 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVRE--------------PDHEFR 864 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--------------chHHHH
Confidence 33456677766544433222 12 246668899999999998888999888887765552 366788
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHH-hcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHH----h
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC-CMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK----Q 712 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~----~ 712 (865)
.+++..++.++........+++.+ ++..+... -.|++.-+|++|+.++..+..+.|....|.+..++--+.+ .
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~ 942 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSY 942 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 899999999988776555555554 44444433 3468889999999999999999998888866443222222 2
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHH
Q 002921 713 LNTPKLKETVSVANNACWAIGELA 736 (865)
Q Consensus 713 l~~~~~~~~~~~~~~a~~~l~~l~ 736 (865)
....+ +..+|-.|+.++..+-
T Consensus 943 vr~~~---dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 943 VRQHD---DDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HhcCc---hhHHHHHHHHHHHHHH
Confidence 22221 3456666666665544
No 105
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.033 Score=61.74 Aligned_cols=348 Identities=11% Similarity=0.118 Sum_probs=190.7
Q ss_pred CCChHH-HHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHhccc---h
Q 002921 444 DKFPLI-RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-----DTNKRVQEAACSAFATLEEEAAEE---L 514 (865)
Q Consensus 444 d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----d~~~~vr~~a~~al~~l~~~~~~~---~ 514 (865)
||...- -.+++..+..+++++... .. ..++.+++... -.++.....+...++.++...+++ +
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t-----~~----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~l 547 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGET-----ES----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYL 547 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcc-----hh----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCccc
Confidence 444433 445666777788776531 22 33444444322 236777778888888888776543 4
Q ss_pred hhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 002921 515 APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQ 594 (865)
Q Consensus 515 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 594 (865)
.|+++.++ ..+.+. +.-..+...+..+++.+..+.. ||.+.++..+-+.+....-.+.+..+++.++|.+..
T Consensus 548 n~sl~~L~----~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~--py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls 619 (982)
T KOG2022|consen 548 NPSLPLLF----QGLHNS--KESEQAISTLKTLCETCPESLD--PYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLS 619 (982)
T ss_pred CchHHHHH----HHhcCc--hHHHHHHHHHHHHHHhhhhhCc--hHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHH
Confidence 45555554 444322 2233456679999999999887 999999998888877654344445688999999998
Q ss_pred Hhcc-ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCc-chhHhhhhhhhHHHHHhhhh---------hh--hhccc
Q 002921 595 ALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK-EFVVCCLDLLSGLAEGLGSG---------IE--SLVAQ 661 (865)
Q Consensus 595 ~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~al~~l~~l~~~~~~~---------~~--~~~~~ 661 (865)
.... +...|+-.++..++.-++..... +. ..++. .....-+.+++++...+-.. .. ..+++
T Consensus 620 ~~~pEe~~kyl~~lin~il~qle~~l~~----~i--~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 620 RLKPEEIPKYLMKLINPILSQLEINLAP----GI--DDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred hccHHhHHHHHHHHHHHHHHHHHHhhcC----CC--CCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcccccc
Confidence 8874 45567777777766655543211 00 00011 11223344555555543221 00 00111
Q ss_pred -------chHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhchhhh-HhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 002921 662 -------SNLRDMLLQCCM--DDASDVRQSAFALLGDLARVCPVHL-QARLSDFLDIAAKQLNTPKLKETVSVANNACWA 731 (865)
Q Consensus 662 -------~~l~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~ 731 (865)
..++|++.+.++ -...++...++...+.=.+..++.| .|.++.+++-+.+..... .++...
T Consensus 694 ~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~---------~a~tl~ 764 (982)
T KOG2022|consen 694 FPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC---------LAVTLS 764 (982)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch---------HHHHHH
Confidence 134555544432 1455566666655555455555567 788999999988843332 122222
Q ss_pred HHHHHH---hccccccchH----HHHHHHHHHHhcCch-hhhhhHHHHHHHHHHhhhhhCCCcccc----cHHHHHHHHH
Q 002921 732 IGELAV---KARQEISPIV----MTVVLCLVPILKHSE-ELNKSLIENSAITLGRLAWVCPELVSP----HMEHFMQPWC 799 (865)
Q Consensus 732 l~~l~~---~~~~~~~~~~----~~il~~l~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~~l~~~~ 799 (865)
++..+. ....+-.|-+ ...++..+.++.+.. .-+++..+..++++.....+.|+...+ +-..+++..+
T Consensus 765 l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~ 844 (982)
T KOG2022|consen 765 LIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAF 844 (982)
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHH
Confidence 222221 1112222322 223444444444431 114567788888888888888886655 2233444555
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhh
Q 002921 800 IALSMIRDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 800 ~~l~~~~~~~~~~~~~~~l~~l~~~ 824 (865)
..+.... ...-+.+...+..++..
T Consensus 845 ~ll~~pE-~~~i~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 845 ILLNSPE-PTTIRAASQFLTALATY 868 (982)
T ss_pred HhcCCCc-cHHHHHHHHHHHHHHhh
Confidence 5555433 33444555555555443
No 106
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.044 Score=61.37 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=116.1
Q ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 002921 184 RLLQF-FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (865)
Q Consensus 184 ~l~~~-l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~ 262 (865)
.+-.+ +.+.+...|..|++-+-.-+... +.++.+++.++..+...+.++++....-|..+++..|+. .--
T Consensus 22 ~~~sg~l~s~n~~~kidAmK~iIa~M~~G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~----~lL 92 (757)
T COG5096 22 ALSSGRLESSNDYKKIDAMKKIIAQMSLG-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL----ALL 92 (757)
T ss_pred hhccccccccChHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH----HHH
Confidence 33334 67777777888876665544331 225555666666555667888888877788788777743 224
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcc
Q 002921 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (865)
Q Consensus 263 l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~ 342 (865)
.++.+...++++++.+|..|+++++.+-.. +. ++.+++.+.+.+.++.
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~----el----~~~~~~~ik~~l~d~~------------------------ 140 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----EL----LGNIIDPIKKLLTDPH------------------------ 140 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChH----HH----HHHHHHHHHHHccCCc------------------------
Confidence 566677788999999999999999877332 22 3333444433333211
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhh-hHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002921 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (865)
Q Consensus 343 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (865)
..+|+.|+.++..+.+.-++.+... ........+.+.+ +.+...|+.++..+-.
T Consensus 141 ----------------------ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 141 ----------------------AYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSD---PIVIANALASLAEIDP 195 (757)
T ss_pred ----------------------HHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCC---chHHHHHHHHHHHhch
Confidence 1389999999988887766655444 5666667777888 8999999999888765
Q ss_pred c
Q 002921 422 G 422 (865)
Q Consensus 422 ~ 422 (865)
.
T Consensus 196 e 196 (757)
T COG5096 196 E 196 (757)
T ss_pred h
Confidence 4
No 107
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.026 Score=62.14 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=106.8
Q ss_pred cHHHHHHHHHhccCCC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 002921 430 HLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLE 507 (865)
Q Consensus 430 ~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~ 507 (865)
-++.++|.++..+++. ++.+-..||.++..+++.++... ....-+..++.+++.|.. ..-.|.+.+..||..+.
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~----a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS----AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh----heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3567899999999875 57899999999999999988531 111223467777776664 46789999999999887
Q ss_pred HHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHH
Q 002921 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (865)
Q Consensus 508 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 587 (865)
+.-+..+.. ..-+-..+..++-.....++.++....++++.+..+-. .|+-..+|.|...+.+. +++.+..++-
T Consensus 284 R~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--~~v~ealPlL~~lLs~~--D~k~ies~~i 357 (1051)
T KOG0168|consen 284 RRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--HFVMEALPLLTPLLSYQ--DKKPIESVCI 357 (1051)
T ss_pred hhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhhc--cchhHHHHHH
Confidence 653322110 01111222333334446677888888888888877654 78888999999988874 2333466777
Q ss_pred HHHHHHHHh
Q 002921 588 CFTSIAQAL 596 (865)
Q Consensus 588 ~l~~l~~~~ 596 (865)
|+..++..+
T Consensus 358 c~~ri~d~f 366 (1051)
T KOG0168|consen 358 CLTRIADGF 366 (1051)
T ss_pred HHHHHHHhc
Confidence 777777654
No 108
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.04 Score=58.96 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHH
Q 002921 13 GFNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (865)
Q Consensus 13 ~~~~~~~~l~~~~-s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~ 91 (865)
.++++..+.++++ +.|+. .|-+||+.|.++..+|+++.-+--++.+ +..+-....|+.+|.+.+..+- .++-+.|
T Consensus 3 sLaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qr 78 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQR 78 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHH
Confidence 4567777888887 45777 9999999999999999999988888875 5677888899999998887765 5899999
Q ss_pred HHHHHHHhhhhhCC----ChhHHHHHHHHHHHHHHhcCc----C--ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhh
Q 002921 92 QYIKSELLPCLGAA----DRHIRSTVGTIVSVVVQLGGI----A--GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (865)
Q Consensus 92 ~~i~~~ll~~l~~~----~~~vr~~~a~~l~~i~~~~~~----~--~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~ 161 (865)
-.||+-+++.+... .+.+-.++++.++.+-+..+- + .+.+.+..+.+.++.++.+.-..|+.+|..++.+
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 99999999999753 466888899999999887532 1 2345666677777666666666666666666655
Q ss_pred c
Q 002921 162 I 162 (865)
Q Consensus 162 ~ 162 (865)
.
T Consensus 159 m 159 (1082)
T KOG1410|consen 159 M 159 (1082)
T ss_pred h
Confidence 4
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.96 E-value=0.0011 Score=67.52 Aligned_cols=177 Identities=17% Similarity=0.148 Sum_probs=123.6
Q ss_pred HHHHHHHHH-HHHHHHhhchhhhhhhHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHh
Q 002921 235 AEVRKLVCA-AFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (865)
Q Consensus 235 ~~~r~~~~~-~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~ 312 (865)
.+-++.++. ....+++..-.....|+.+|+..+++.+.+ .++..+..|+..+..+++. ....+..+.+-.+...+.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICKVLE 378 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHHHHH
Confidence 344555555 445555554455567888898888888888 6677888999999999887 333344343333333322
Q ss_pred hccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHH
Q 002921 313 NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMP 392 (865)
Q Consensus 313 ~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ 392 (865)
.-+... +-..|.++..|+..++.+.|...+..+.|
T Consensus 379 aa~ds~---------------------------------------------~~v~~~Aeed~~~~las~~P~~~I~~i~~ 413 (516)
T KOG2956|consen 379 AAKDSQ---------------------------------------------DEVMRVAEEDCLTTLASHLPLQCIVNISP 413 (516)
T ss_pred HHhCCc---------------------------------------------hhHHHHHHHHHHHHHHhhCchhHHHHHhh
Confidence 211110 11367888888888899988876666666
Q ss_pred HHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
.+.. .| ...--+++.++..+++... +.+...++++.|.+++..++++..||.+|..||-.+...+.
T Consensus 414 ~Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 414 LILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 6543 44 4444556668888888776 56788999999999999999999999999999988777665
No 110
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.043 Score=59.67 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=90.9
Q ss_pred HHHHHHHHhhh--CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH---HHHHHHhccCCCC
Q 002921 372 AAALDVLSNVF--GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE---IVAFLIPLLDDKF 446 (865)
Q Consensus 372 ~~~l~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---i~~~l~~~l~d~~ 446 (865)
.++++.+.... |+.+-..++.++...+-+.+ -..+.--+.-+..+-...++ ...++. +...+.+-|++||
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~---~elKKLly~ywE~vPKt~~d--gkl~~EMILvcna~RkDLQHPN 112 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRN---HELKKLLYYYWELVPKTDSD--GKLLHEMILVCNAYRKDLQHPN 112 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCc---hHHHHHHHHHHHHccccCCC--cccHHHHHHHHHHHhhhccCch
Confidence 44444444443 44433333444444555555 44444333333222221111 123333 4556778899999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~ 526 (865)
..+|...+..++++- ..+.+++++|.+..++.+++.-||..|.-|+.++.+. .+.+.|-.|+++...+
T Consensus 113 EyiRG~TLRFLckLk-----------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 113 EYIRGSTLRFLCKLK-----------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFL 180 (948)
T ss_pred HhhcchhhhhhhhcC-----------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHH
Confidence 999999987776543 3567889999999999999999999999999988876 5667777788887765
Q ss_pred HHhcc
Q 002921 527 MAFGK 531 (865)
Q Consensus 527 ~~l~~ 531 (865)
..=++
T Consensus 181 ~~e~D 185 (948)
T KOG1058|consen 181 LTEQD 185 (948)
T ss_pred HhccC
Confidence 54443
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.033 Score=57.66 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhc-hh
Q 002921 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVR-PS 254 (865)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~-~~ 254 (865)
.+..++..+.+-..|++..+|..|+.+|++..+..|+....+.+.++..++..+-| .+.+|.-.++.+|..+.+.. ..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 45777778888888999999999999999999999999999888888888876654 46788888888888877643 44
Q ss_pred hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 255 ~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.+.+|+-.+.-.+.....+.++++|..++..+..++..
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 56677777777777788888999999998888777554
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.045 Score=59.02 Aligned_cols=406 Identities=14% Similarity=0.151 Sum_probs=228.6
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C---C-----CcHHHHHHhhhcccCCCHHHHHH-HHHHHHHH
Q 002921 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----F---P-----DFNNYLAFILARAEGKSVEIRQA-AGLLLKNN 78 (865)
Q Consensus 12 ~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~----~---p-----~~~~~l~~il~~~~~~~~~~R~~-a~~~L~~~ 78 (865)
.+++.+..=+.++.+-+. .+|+..+.|.+++. + . -++..|+.|... +.+..--|+ |+.+|+..
T Consensus 11 rGL~vFISDlRncq~kea--E~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll--g~dIdFGhmEaV~LLss~ 86 (938)
T KOG1077|consen 11 RGLAVFISDLRNCQSKEA--EEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL--GYDIDFGHMEAVNLLSSN 86 (938)
T ss_pred hhHHHHHHHhhhhhchHH--HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh--cCccccchHHHHHHhhcC
Confidence 456667776666665443 57788888887752 1 1 234445555443 233333333 33333211
Q ss_pred H------HhhhCc-C---CHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC--Chh
Q 002921 79 L------RTAYKS-M---SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DIN 146 (865)
Q Consensus 79 i------~~~w~~-~---~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~--~~~ 146 (865)
. ...+-. + ..+....+.+.+-+-|.+.++..-..+-++++.|...+.. ..+-+.+-+.+.++ ...
T Consensus 87 kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~---ea~~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 87 KYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMA---EAFADDIPKLLVSGSSMDY 163 (938)
T ss_pred CccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHH---HHhhhhhHHHHhCCcchHH
Confidence 1 000000 1 1233344445555556667777777777888888776532 23344445666655 347
Q ss_pred HHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHH
Q 002921 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (865)
Q Consensus 147 ~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l 226 (865)
+|+.|..+|-.+.+..++.... ..-...++.+|.|.+..|-.++...+..++...|+.+.-.++.-+..+
T Consensus 164 vkqkaALclL~L~r~spDl~~~----------~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L 233 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNP----------GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRL 233 (938)
T ss_pred HHHHHHHHHHHHHhcCccccCh----------hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHH
Confidence 8888888998998887654322 456778999999999888889988888888888877665554434333
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHhh-chhhhhhhHH-HHHHHHhhhc-CCCCHHHHHHHHHHHHHhhccCC-chhhHHhh
Q 002921 227 FLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLR-NLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQL-PHENLKEF 302 (865)
Q Consensus 227 ~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~~~l~-~l~~~l~~~~-~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~ 302 (865)
........... -+. ++..-.|.+. .++. +++.. ...|+.+|....+++..+..... ..+. +..
T Consensus 234 ~riv~~~~t~~-----------qdYTyy~vP~PWL~vKl~r-lLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~-k~v 300 (938)
T KOG1077|consen 234 SRIVVVVGTSL-----------QDYTYYFVPAPWLQVKLLR-LLQIYPTPEDPSTRARLNEVLERILNKAQEPPKS-KKV 300 (938)
T ss_pred HHHHhhcccch-----------hhceeecCCChHHHHHHHH-HHHhCCCCCCchHHHHHHHHHHHHHhccccCccc-cch
Confidence 32221110000 111 1111112222 2222 22222 23455566666666655543310 0000 000
Q ss_pred hhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhh
Q 002921 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNV 381 (865)
Q Consensus 303 ~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~-a~~~l~~l~~~ 381 (865)
... +...+ -.+++.-+...
T Consensus 301 q~~------------------------------------------------------------na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 301 QHS------------------------------------------------------------NAKNAVLFEAISLAIHL 320 (938)
T ss_pred Hhh------------------------------------------------------------hhHHHHHHHHHHHHHHc
Confidence 000 00100 11111111111
Q ss_pred hC-cchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc--hhhhhhccHHHHHHHHHhccC-CCChHHHHHHHHHH
Q 002921 382 FG-DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG--CIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTL 457 (865)
Q Consensus 382 ~~-~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l 457 (865)
-+ ++.+......+-+++.+.+ ...|+-|+..+..++.. ..+.++.| ...++..|+ +++..+|+.|...|
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE---~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLL 393 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRE---TNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLL 393 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHH
Confidence 11 1334444455556677777 88999988888777653 22344444 345666777 88899999999988
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHH
Q 002921 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (865)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l 525 (865)
-.++.. ...+.++..+++.+...+..+|+....-+.-+.+....+..-|++.+++-+
T Consensus 394 Y~mcD~-----------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 394 YAMCDV-----------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHhch-----------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 777653 344677778888888888999998887777788888888888888777644
No 113
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.96 E-value=3e-05 Score=67.59 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (865)
+++.+...+.++++.+|..++++++.++...+.. ...... .+++.+.+.+.++++.++..+++++++++.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 5777888888999999999999999998753321 223333 7889999999999999999999999999876543
Q ss_pred chhhhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHH
Q 002921 513 ELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (865)
Q Consensus 513 ~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~ 548 (865)
....+. ..+++.+...+++.+..+++.++.++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 322223 347888888888887778888888887664
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.95 E-value=1.7e-05 Score=57.27 Aligned_cols=55 Identities=38% Similarity=0.529 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHH
Q 002921 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (865)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l 735 (865)
+.+|..|+.+||.++...+..+.++++++++.+...++++ +..||.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999987 679999999999975
No 115
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.94 E-value=0.0061 Score=62.09 Aligned_cols=210 Identities=20% Similarity=0.149 Sum_probs=139.9
Q ss_pred hcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 002921 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (865)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (865)
.+.+.....|..+++.+..+.......+.+......++..+...+..+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~----------------------------- 101 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSE----------------------------- 101 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHH-----------------------------
Confidence 334556778999999888876654456667777778888887777654321
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhhC-----cchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh
Q 002921 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (865)
Q Consensus 350 ~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 424 (865)
-+..|..++..++-.+| ++++..+.|.+.+.+.+.. .....|.+++.+|+.++-.+.
T Consensus 102 -----------------E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 102 -----------------EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGG 163 (309)
T ss_pred -----------------HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhc
Confidence 14567788888888866 3677888899888887653 226788888888887755333
Q ss_pred h---hhh---ccHHHHHHHHHhccC--------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC
Q 002921 425 K---GLY---PHLSEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (865)
Q Consensus 425 ~---~~~---~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d 490 (865)
. .+. ..+..++........ .+++.+..+|+.+.+-+...++.. .....+...++.+...|.+
T Consensus 164 ~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 164 SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLDS 239 (309)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcC
Confidence 2 222 333333333222211 124678899988888888776542 2346678889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHHHHHHHhc
Q 002921 491 TNKRVQEAACSAFATLEEEAAE----ELAPRLEIILQHLMMAFG 530 (865)
Q Consensus 491 ~~~~vr~~a~~al~~l~~~~~~----~~~~~~~~i~~~l~~~l~ 530 (865)
++..||.+|..+|.-+.+.... ...+..+.+++.+..+-.
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 9999999999999988876532 223444555555544443
No 116
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.93 E-value=0.081 Score=61.10 Aligned_cols=215 Identities=18% Similarity=0.156 Sum_probs=140.0
Q ss_pred hHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcC
Q 002921 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLN 714 (865)
Q Consensus 637 ~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 714 (865)
+.++--++..+.+.+|+.....++. +-..++..+++. ..+.--..+..+..+...++..+.| +-..+|.+...+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~--l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPH--LWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcch--HHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 3467778888888899888877776 666666666531 1123345566667777677777777 6778888888888
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHH
Q 002921 715 TPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHF 794 (865)
Q Consensus 715 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 794 (865)
+. ...+|..++.|+|.+......+ -...+.+.+.+.+++..... -++.+...++.+.....-.+.||.+.+
T Consensus 827 s~----~~a~r~~~ar~i~~~~k~~~~e---~m~~v~~~~~~ll~~~~~~~--~r~~a~e~~~~l~~~l~~~l~~~~~Ll 897 (1549)
T KOG0392|consen 827 SI----HIAVRYAAARCIGTMFKSATRE---TMATVINGFLPLLGDLDKFV--RRQGADELIELLDAVLMVGLVPYNPLL 897 (1549)
T ss_pred cc----hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccchhhHh--hhhhHHHHHHHHHHhhcccccccceee
Confidence 88 7799999999999998766532 34455777888887764321 223344455555554444567888888
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhCc--------hhhHhh-------HHHHHHHhhccCCCcc------HHHHH
Q 002921 795 MQPWCIALSMIRDDTEKEDAFRGLCAMVKANP--------SGALSS-------LVFMCRAIASWHVRIT------LHLIL 853 (865)
Q Consensus 795 l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~-------l~~~~~~~~~~~~~~~------~~~~~ 853 (865)
+..++..+++. ....|..+-+++..++..-| .++-+. =..|++.+..-++.|. ++-++
T Consensus 898 v~pllr~msd~-~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~L 976 (1549)
T KOG0392|consen 898 VVPLLRRMSDQ-IDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKL 976 (1549)
T ss_pred hhhhhcccccc-hHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHH
Confidence 88888777663 34568899999999998733 222222 2334555555555442 55555
Q ss_pred HHHHhcCcccC
Q 002921 854 LSVIFFGSFWL 864 (865)
Q Consensus 854 ~~~~~~~~~~~ 864 (865)
+.-+-=|=-|+
T Consensus 977 RkYQqEGVnWL 987 (1549)
T KOG0392|consen 977 RKYQQEGVNWL 987 (1549)
T ss_pred HHHHHhccHHH
Confidence 55555555453
No 117
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.93 E-value=0.0065 Score=61.88 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--hccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccC
Q 002921 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (865)
Q Consensus 478 ~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (865)
..-+...+..+.+.....|+.+...+..++.. ..+.+......++..+.+.++....+.+..++.+++.++-.+|...
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 33355556667777788999998888887754 3566677788899999999988777667788899999988877332
Q ss_pred CchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchH--HHHHHHHHHHHHHHHHhhccc--ccCC
Q 002921 556 NQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ--PVFQRCINIIQTQQLAKVDSV--AAGA 630 (865)
Q Consensus 556 ~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~--~~~~ 630 (865)
.....+..+.|.|...+.... ..... ..++.|++.++...+........ ..+..++.... .+.++. ....
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~----~~~~~~~~~~~~ 196 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI----LKSDGNAPVVAA 196 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh----cCcCCCcccccC
Confidence 223788899998888887653 22333 56777888777655553221110 22222211111 111111 1122
Q ss_pred CCCcchhHhhhhhhhHHHHHhhh-hhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 002921 631 QYDKEFVVCCLDLLSGLAEGLGS-GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (865)
Q Consensus 631 ~~~~~~~~~al~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 694 (865)
.++..+...++..|+-++..++. .+..++.. .+|.+...+...+.+||.+|-.+|+-+....
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 33567888999999999987765 34455554 8888888999999999999988887665543
No 118
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.93 E-value=0.065 Score=59.85 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=123.0
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002921 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 662 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
..+.|.+...++.....+|..-+.++..++.+.+ ..+.|.++.++|.++..++-+ +..+|-....++-.+....+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~----D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP----DVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC----ccchhhhHhhhhhHHHHhcc
Confidence 3488888888886677788888889999999888 456799999999999999998 67888888888888888777
Q ss_pred ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCC-cccccHHHHHHHHHHHhccCCChHHHHHHHHH
Q 002921 741 QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE-LVSPHMEHFMQPWCIALSMIRDDTEKEDAFRG 817 (865)
Q Consensus 741 ~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 817 (865)
.-...|+.++++.++.+=.+.++..-.+|+.|+.+++-+..+.|. .+.+|-+.+++.+...|++++. -.|+.|+++
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR-lVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR-LVRKEAVDT 1018 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH-HHHHHHHHH
Confidence 777789999999998776666432356899999999999987765 5778999999999999988664 355555543
No 119
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.92 E-value=0.0022 Score=71.81 Aligned_cols=371 Identities=14% Similarity=0.139 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 002921 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (865)
Q Consensus 408 ~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (865)
.-..++..|..+++...-...-.-..+++.+++.|...+..+...+..+|.+++.+-... ..-.-..+++.+.+.
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-----~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK-----DEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----HHHHHcCCHHHHHHH
Confidence 334777888899887763332233457888999999889999998888888887543210 111234678889999
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc-ccCCchhhHhhh
Q 002921 488 ILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG-FELNQPVYLDIL 564 (865)
Q Consensus 488 l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~l 564 (865)
+..++..++..+..+|.++.-.. .+.+.+ ..+++.|..++.+.+. +..++..+..+...-. .... .| ...
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f--~~-Tdc 412 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMF--AY-TDC 412 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHH--hh-cch
Confidence 99888899999999988886432 112221 2356666677765432 2334555555443111 1111 12 246
Q ss_pred hHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc--ccc--cchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhh
Q 002921 565 MPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA--GFT--QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCC 640 (865)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~--~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 640 (865)
+|.+.+.+...++..-. ..++..+.+++..-.. .+. .-++.++...++ .. |+- .
T Consensus 413 Ip~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~----~~-------------D~l----L 470 (708)
T PF05804_consen 413 IPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQLMCEGNGLQSLMKRALK----TR-------------DPL----L 470 (708)
T ss_pred HHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh----cc-------------cHH----H
Confidence 67777776554322211 1222222222211100 000 112222222211 00 111 2
Q ss_pred hhhhhHHHHHhhh---hhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHhcCC
Q 002921 641 LDLLSGLAEGLGS---GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNT 715 (865)
Q Consensus 641 l~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~ 715 (865)
+.++.++..+-|+ .|.+| +.+++..+.+..+.+..-.++++++++... +......+. .++|.+.+.+..
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~-----i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDF-----IGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHH-----HHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCC
Confidence 3344455444322 23333 333333333334566666666666666532 223444444 478888888876
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhccccccchH--HHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccH--
Q 002921 716 PKLKETVSVANNACWAIGELAVKARQEISPIV--MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM-- 791 (865)
Q Consensus 716 ~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-- 791 (865)
... ..++.-.++..+|.++..- .-.+.+ ..++..++.++....+ ...+.-..+-++.+++...+. ..++
T Consensus 545 g~~--~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~t--r~~ll~ 617 (708)
T PF05804_consen 545 GAS--EDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEET--REVLLK 617 (708)
T ss_pred CCC--ChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHH--HHHHHh
Confidence 543 2356666777888776431 112222 2456677777765432 345666667777777753221 1111
Q ss_pred -HHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCc
Q 002921 792 -EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 792 -~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 826 (865)
.++...++..+++ ++.+.|+.+=.+|--+...++
T Consensus 618 ~~~~~~ylidL~~d-~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 618 ETEIPAYLIDLMHD-KNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred ccchHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCH
Confidence 2344555665555 456777777777776666655
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.91 E-value=0.021 Score=61.80 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
..+...+++|+.++- +.|..++. ..+.-.+.++.+..|.+..||.++...+-.+++.. ++..+.+...|.|+++
T Consensus 33 kg~~k~K~Laaq~I~----kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIP----KFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHHHH----HHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHH----HHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHh
Confidence 357889999997664 44544443 44455588899889999999999998888888863 5566899999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHhccccHHhHH-
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFV- 217 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~vr~~a~~~l~~~~~~~~~~~~~- 217 (865)
++++..+...=.+|..+.+.-+. ..+..++.-+. .++..+|..+++.+..-+..++..+..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k---------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p 171 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPK---------------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTP 171 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HH---------------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS--
T ss_pred cccHHHHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhc
Confidence 99887776666667666664332 22333333332 457789999999997766555433222
Q ss_pred --hH-HHHHHHHHHhhCC
Q 002921 218 --SM-DQYLQGLFLLSND 232 (865)
Q Consensus 218 --~~-~~~l~~l~~~~~~ 232 (865)
.+ ..++..+...+.|
T Consensus 172 ~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 172 QKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp -HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 22 2344555566665
No 121
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.90 E-value=0.0052 Score=64.09 Aligned_cols=215 Identities=13% Similarity=0.169 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHhhch--hhh--hhhHHHHHH
Q 002921 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-----SAEVRKLVCAAFNLLIEVRP--SFL--EPHLRNLFE 265 (865)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~r~~~~~~l~~l~~~~~--~~~--~~~l~~l~~ 265 (865)
.++..+++++..+.+.-.+.+.++++.++..+.+++..- ...+...++..|..+++... ..+ .+++..|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 678888888888887767777788888888888776431 12344456666666554321 122 456666665
Q ss_pred HHh-hh----------------------cCCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhh
Q 002921 266 YML-QV----------------------NKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (865)
Q Consensus 266 ~l~-~~----------------------~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~ 321 (865)
.++ .. +... ....|..|.+++..+++. ..+.+.+.+...+..+++....
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~----- 263 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYAS----- 263 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhh-----
Confidence 432 11 1111 134578899999998876 3444444444444443321110
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC-----cch---hhhhHHH
Q 002921 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----DEI---LPTLMPV 393 (865)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-----~~~---~~~~~~~ 393 (865)
+ ...+|+.+.+|..+++.++.... ..- .-.+..+
T Consensus 264 -----~---------------------------------~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 264 -----N---------------------------------PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp ---------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred -----C---------------------------------CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 0 11357788899999999987662 110 0012222
Q ss_pred HHHh----hccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHH
Q 002921 394 IQAK----LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (865)
Q Consensus 394 l~~~----l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (865)
+.+. ++...+..+-.|-.|+..+..+-...++ +.+..++|.++.+|.+++..|+.-|+.++
T Consensus 306 f~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 2211111266788888888887776553 57788999999999999999999887764
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=0.00016 Score=58.73 Aligned_cols=85 Identities=29% Similarity=0.428 Sum_probs=66.9
Q ss_pred HHHHHhh-ccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002921 392 PVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (865)
Q Consensus 392 ~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (865)
|.+.+.+ ++++ |..|..++.+|+.+. -+.+++.+...++|+++.||.+|+++++++..
T Consensus 2 ~~L~~~l~~~~~---~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPD---PQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHTSSS---HHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 5566666 6777 999999999999432 13568888888999999999999999998853
Q ss_pred CcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 002921 471 QNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFA 504 (865)
Q Consensus 471 ~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~ 504 (865)
+..++.+.+.+.+ ++..||..|..+|+
T Consensus 61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2456777777876 46778999998875
No 123
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.89 E-value=0.0017 Score=66.32 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=137.1
Q ss_pred hhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHH-HHHHHHHhcCcCChH----HHHHHHHHhhcc-CChhHHhHHHHHH
Q 002921 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGT-IVSVVVQLGGIAGWL----ELLQALVTCLDS-NDINHMEGAMDAL 155 (865)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~-~l~~i~~~~~~~~w~----~ll~~l~~~l~~-~~~~~r~~al~~L 155 (865)
+|..-+.+.-+.+++.+.+.=.+....-|+.+-. +...++. .....|. +++..+++.+.+ .+...|..|+++|
T Consensus 276 ~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e-~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL 354 (516)
T KOG2956|consen 276 QLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCE-GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVL 354 (516)
T ss_pred hCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 4443344444555544444333333334444333 4443333 3345665 566778888887 6888999999999
Q ss_pred HHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCC
Q 002921 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS 234 (865)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (865)
+.+++.-+..+.+ .....+..+++...|+.+ .++.++=.|+..+..+.|......+ .+.++. .+
T Consensus 355 ~~ml~~Q~~~l~D--------stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i---~~~Ilt----~D 419 (516)
T KOG2956|consen 355 REMLTNQPARLFD--------STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNI---SPLILT----AD 419 (516)
T ss_pred HHHHHhchHhhhc--------hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHH---hhHHhc----Cc
Confidence 9999987776643 245566677777788765 4555555666666676654433322 233322 44
Q ss_pred HHHHHHHHHHHHHHHhhc-hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHH
Q 002921 235 AEVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (865)
Q Consensus 235 ~~~r~~~~~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 309 (865)
...-..+++++..+++.. .+.+.+.++++.|.+++...+.+..||..++=++.++... ...+.++||+.++-..
T Consensus 420 ~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~-vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 420 EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR-VGMEEMEPHLEQLTSS 494 (516)
T ss_pred chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH-HhHHhhhhHhhhccHH
Confidence 555567788888888754 4567788999999999999999999999988887777554 2337788999876443
No 124
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.87 E-value=0.0051 Score=60.72 Aligned_cols=249 Identities=17% Similarity=0.130 Sum_probs=143.4
Q ss_pred HHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhh
Q 002921 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (865)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~ 517 (865)
+-+.|.++++.+|..|..+|+.+.+.++.. .-..+...-++..+...+.|. ..+. .+..++..+.+. +..-...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~-~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKM-KNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhC-cCCChhh
Confidence 345688999999999999999998887642 123445667777777788663 3343 336677766632 2222233
Q ss_pred HHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHH
Q 002921 518 LEIILQHLMMAFG--KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQ 594 (865)
Q Consensus 518 ~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~l~~ 594 (865)
...++..+.+... ......+..+++.+..+......... .+-+.++..+++.+... .||. +.-+++.+..+..
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~--~~~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ--SMGDDFVYGFIQLIDGE--KDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH--hchhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Confidence 5556665554333 22334566788888887776543332 33345555666665543 3432 3444455555554
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhh--hhhhhhcccchHHHHHHHHh
Q 002921 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG--SGIESLVAQSNLRDMLLQCC 672 (865)
Q Consensus 595 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~--~~~~~~~~~~~l~~~l~~~l 672 (865)
.+. +.++.+.++..+ ...=+.+..+.. . |+ +..+.-++-..+-..+. +.|.+ ..+|+++.-+
T Consensus 154 ~~~--~~~~~e~lFd~~----~cYFPI~F~pp~--~--dp-~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL 217 (262)
T PF14500_consen 154 EFD--ISEFAEDLFDVF----SCYFPITFRPPP--N--DP-YGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKL 217 (262)
T ss_pred hcc--cchhHHHHHHHh----hheeeeeeeCCC--C--CC-CCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHH
Confidence 443 244444444432 221111111100 0 11 11111122222323222 22322 3889999999
Q ss_pred cCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHh
Q 002921 673 MDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQ 712 (865)
Q Consensus 673 ~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~ 712 (865)
.++...++..++.++..++..+| ..+.+|...++..+...
T Consensus 218 ~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 218 DSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred cCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998 56889998888876543
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.016 Score=56.35 Aligned_cols=302 Identities=16% Similarity=0.135 Sum_probs=169.7
Q ss_pred ChhHHhH---HHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH----HhH
Q 002921 144 DINHMEG---AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS----ALF 216 (865)
Q Consensus 144 ~~~~r~~---al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~----~~~ 216 (865)
+.++|+. ...+|..+++..... ...++++|.+..+|..++..|+..+++.++.+++.... ++.
T Consensus 53 NenhrekttlcVscLERLfkakega----------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil 122 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGA----------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL 122 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccch----------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH
Confidence 3456665 566776666654332 23588999999999999999999999999999987542 111
Q ss_pred H-hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHH--HHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 217 V-SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFE--YMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 217 ~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~--~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
. .-..+++.++..+...+.++.+.+.+.+..++.. +.-+...++ .+.. .+.+....-++-+|...++.+..+.+.
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI 201 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 1 1235677888888888899999999999887743 322211111 0000 000111111233566666666655443
Q ss_pred CCchhhHH-hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 293 QLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 293 ~~~~~~~~-~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
.+.... ---..++..+..-|..++| .-+|..+
T Consensus 202 --SpesaneckkSGLldlLeaElkGteD---------------------------------------------tLVianc 234 (524)
T KOG4413|consen 202 --SPESANECKKSGLLDLLEAELKGTED---------------------------------------------TLVIANC 234 (524)
T ss_pred --CHHHHhHhhhhhHHHHHHHHhcCCcc---------------------------------------------eeehhhH
Confidence 111100 0112344444333333221 1256667
Q ss_pred HHHHHHHHhhh-Ccchhh--hhHHHHHHhhcc--CCCcchhHHHHHHHHHHHHHhch------hhhhhccHHHHHHHHHh
Q 002921 372 AAALDVLSNVF-GDEILP--TLMPVIQAKLSA--SGDEAWKDREAAVLALGAIAEGC------IKGLYPHLSEIVAFLIP 440 (865)
Q Consensus 372 ~~~l~~l~~~~-~~~~~~--~~~~~l~~~l~~--~~~~~~~~r~~a~~~l~~l~~~~------~~~~~~~l~~i~~~l~~ 440 (865)
.++...++..- |.++++ .++..+...+.. .+ +-.+.-+++.++.+.... .+.+-..+...+...+.
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsd---PfekfralmgfgkffgkeaimdvseeaicealiiaidgsfE 311 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSD---PFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFE 311 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCC---cHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHH
Confidence 77777777665 445543 456666665543 34 667777787777765432 12223344445566677
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHH
Q 002921 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEE 509 (865)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~al~~l~~~ 509 (865)
.+...+|....+|..++|.+....... +.....-..-...++....|.+ ..-++.+..++..+...
T Consensus 312 miEmnDpdaieaAiDalGilGSnteGa---dlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 312 MIEMNDPDAIEAAIDALGILGSNTEGA---DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred hhhcCCchHHHHHHHHHHhccCCcchh---HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 777788889999999999988764421 0011111122233333333432 22345667777776654
No 126
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.014 Score=56.76 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhc-CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC
Q 002921 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (865)
Q Consensus 113 ~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 191 (865)
...++..+.+.. +-...|.++|.|...+..++..++..++..++.+++++...--++ +.-..-..+++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVse---illvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSE---ILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHH---HHHHhhhhHHHHHHHHHcC
Confidence 455666777664 455669999999999999999999999999999999886421111 0001126788999999999
Q ss_pred CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHHHhhchhhhhhhH
Q 002921 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-----------SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (865)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 260 (865)
.+.+|-.+|.+.+.++..+ |. -++.+|.. ...-+.-.|..+++.+..+.+..++.....-
T Consensus 140 eddeVAkAAiesikrialf-pa--------aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneck 210 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PA--------ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECK 210 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HH--------HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhh
Confidence 9999999999999998753 11 12222221 1111234566677777777776666543221
Q ss_pred -HHHHHHHhhhcCC-CCHHHHHHHHHHHHHhhcc
Q 002921 261 -RNLFEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 261 -~~l~~~l~~~~~~-~~~~v~~~a~~~l~~l~~~ 292 (865)
..++..+..-++. .|.-|+..+++....+++.
T Consensus 211 kSGLldlLeaElkGteDtLVianciElvteLaet 244 (524)
T KOG4413|consen 211 KSGLLDLLEAELKGTEDTLVIANCIELVTELAET 244 (524)
T ss_pred hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH
Confidence 2455555555555 4555778889998888776
No 127
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0019 Score=70.68 Aligned_cols=219 Identities=16% Similarity=0.123 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
+..+.+|-.|...|++.+.++ ..-+-...+.+....+..|.+.++.|--.+...+..++..++.+-.|.+.+.-...-+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~ 816 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKK 816 (982)
T ss_pred CCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 455678999999999999876 3345556667888889999999999988888888888887665555555554433333
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHH
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 221 (865)
...++.|...-.++..++...++... .+...+...++.+.++++...|.+++..++.++........+.+..
T Consensus 817 k~~~d~~lkVGEai~k~~qa~Gel~~--------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 817 KLQTDYRLKVGEAILKVAQALGELVF--------KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred CCCccceehHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 33344444444677777777665432 3457888889999999999999999999999987654333444555
Q ss_pred HHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhchhhhhh----hHHHHHHHHhhhc-CCCCHHHHHHHHHHHHHh
Q 002921 222 YLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEP----HLRNLFEYMLQVN-KDTDDDVALEACEFWHSY 289 (865)
Q Consensus 222 ~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~----~l~~l~~~l~~~~-~~~~~~v~~~a~~~l~~l 289 (865)
++..+.... .|++.-+|++|...+..+....+..+-+ ++-++...+.... .+.++.++..+..++..+
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 555555443 3667889999999999988877766555 3344555555544 445566777776655443
No 128
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.77 E-value=0.088 Score=56.65 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHhchhhh-hhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG 483 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~ 483 (865)
-..+.||+.++-.++.....- -...-.+++..+++.+.||...|..++.-++.++.-.+.+. ...++ ...+..
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-----kskfl~~ngId~ 465 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-----KSKFLRNNGIDI 465 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-----HHHHHHcCcHHH
Confidence 667888888887776544310 01223457777888889999999999988887776665432 22232 456778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcc--chhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 002921 484 LLKRILDTNKRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 484 l~~~l~d~~~~vr~~a~~al~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (865)
+...+.+++..+|..+.++|..+.-++.+ .+.++-.--.+.+....++++.++++..+..+.++....
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 88888899999999999999988766643 345555555666777888889999999999998877543
No 129
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.77 E-value=0.29 Score=62.45 Aligned_cols=418 Identities=16% Similarity=0.156 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhc----cCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 442 (865)
.+.++...+++++...+..+++.+........+ +.. .+...-+..-+..+..+....+.++...++..+++.+
T Consensus 581 ~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~---~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~ 657 (2341)
T KOG0891|consen 581 IQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGM---ARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKL 657 (2341)
T ss_pred hHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcch---HHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 566677777777666554444444333333222 222 2333333333333333444445677777788888899
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhccchhhh--HH
Q 002921 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPR--LE 519 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~al~~l~~~~~~~~~~~--~~ 519 (865)
.++.+.+-.++..++++++..... ....+.+..++.+.+.+.|. +..-|..+..++++++...+-.+.|| .|
T Consensus 658 ~~~~s~~~~~~~~~~~eL~~v~g~-----~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P 732 (2341)
T KOG0891|consen 658 QDPSSGVEKAVLETIGELCAVGGE-----EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYP 732 (2341)
T ss_pred hccchhhHHHHHHHHHHHHHhccc-----hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccCh
Confidence 999999999999999999876542 23344456677777777764 45667788899999988765555554 45
Q ss_pred HHHHHHHHHhcccchhh-HHHHHHHHHHHHHHhcccCCchhhHhhhhHHH--HHHHhcCC--------------------
Q 002921 520 IILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPL--IAKWQQLP-------------------- 576 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l--~~~l~~~~-------------------- 576 (865)
.++..+.+.+....... +..+...++.+.. . + +|........ .....+..
T Consensus 733 ~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~----~--d-~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~ 805 (2341)
T KOG0891|consen 733 ELLDILINILKTEQSSTIRREAIRLLGLLGA----L--D-PYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEY 805 (2341)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc----c--c-hhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhh
Confidence 66666666655443322 2233333331111 0 0 1111111000 00000000
Q ss_pred ------------CCCcc----hhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhh
Q 002921 577 ------------NSDKD----LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCC 640 (865)
Q Consensus 577 ------------~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 640 (865)
-.++. ....+.+.-.+....|.....|++++++.++...... ..+.....
T Consensus 806 ~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~--------------~~~~~~f~ 871 (2341)
T KOG0891|consen 806 YPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSC--------------PPNLREFY 871 (2341)
T ss_pred hhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhc--------------CcchhHHH
Confidence 00110 1223333444555666666777788777776544411 11212212
Q ss_pred hhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCC
Q 002921 641 LDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (865)
Q Consensus 641 l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 720 (865)
+...+......+.+..++.+. +...+..... .+..+......++.++....+..|..+++..++.........
T Consensus 872 ~~q~~~~~~~~~~h~~~~~~~--i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~---- 944 (2341)
T KOG0891|consen 872 FQQLTSLVAIVRQHIRPYMES--IFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHD---- 944 (2341)
T ss_pred HHhhhhhhhccchhHhhhhhh--HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccc----
Confidence 222222222233333344432 3333322221 233344455677788888888889999999888877766332
Q ss_pred chhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHH
Q 002921 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI 800 (865)
Q Consensus 721 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 800 (865)
....+......+..+ ..-+.....|.+-++..+++++.++. ....++..+..+++++...- ....|...+...+..
T Consensus 945 ~s~~~~~~~~~~~~~-~~~~~~~~~~~hl~~~~~vkl~~~~~-~~~~~~~~~l~t~~~l~~~~--~~~~~~s~i~~~~~r 1020 (2341)
T KOG0891|consen 945 KSKDRVVSRKVLQSL-QKFGSNLEQYLHLLLPPIVKLFEDPT-VPLSIRKSALITIGRLAQQV--DLSEYASRIIHPLVR 1020 (2341)
T ss_pred ccchHHHHHHhhHHH-HhcCccHHhhHhhhccHHHHHHhhhh-hhHHHHhhHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 112222222222222 22233344566677778888887763 35567788888998888642 234566777777777
Q ss_pred HhccCCChHHHHHHHHHHHHHHhhCc
Q 002921 801 ALSMIRDDTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 801 ~l~~~~~~~~~~~~~~~l~~l~~~~~ 826 (865)
.+... .+-+..+...++.+++...
T Consensus 1021 ~l~~s--~el~~~~~~~l~~l~~~~~ 1044 (2341)
T KOG0891|consen 1021 VLSSS--PELRDVIMDTLIALVKQLG 1044 (2341)
T ss_pred hhccc--hhHHHHHHHHHHHHHHhhc
Confidence 76664 6778888888888888633
No 130
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.77 E-value=0.0055 Score=60.50 Aligned_cols=249 Identities=18% Similarity=0.178 Sum_probs=154.0
Q ss_pred HHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHH
Q 002921 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (865)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~ 214 (865)
.|...+.++++..|..|+.+|+.+++.++...-+ .+.+.-++..+..-+.| ...-..+++.+..++.. ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cCC
Confidence 4667888999999999999999999998864322 12345555555555543 33334447777777632 111
Q ss_pred hHHhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHhhc
Q 002921 215 LFVSMDQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (865)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~v~~~a~~~l~~l~~ 291 (865)
-......++..+++...- -....|..+++.+..+.+.+...+...-..++..+++.++. .|+.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 122244556666654332 23568899999999999888777765556777777776654 577777788888877766
Q ss_pred cCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
.. . +.++.+.++..+.-+.-.+ |.- ..++. .....
T Consensus 154 ~~---~-~~~~~e~lFd~~~cYFPI~-------------------------F~p----p~~dp------------~~IT~ 188 (262)
T PF14500_consen 154 EF---D-ISEFAEDLFDVFSCYFPIT-------------------------FRP----PPNDP------------YGITR 188 (262)
T ss_pred hc---c-cchhHHHHHHHhhheeeee-------------------------eeC----CCCCC------------CCCCH
Confidence 52 1 2556666666654332221 000 00000 00011
Q ss_pred HHHHHHHHhhh--CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHh
Q 002921 372 AAALDVLSNVF--GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIP 440 (865)
Q Consensus 372 ~~~l~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~ 440 (865)
.++-..+-..+ .+.+.+..+|.+.+-+.++. ...|.-++.++...+...+ +.+.+|...++..+-.
T Consensus 189 edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 189 EDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 11222222222 34566788999999998887 7899999999998888766 4567788777776543
No 131
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.099 Score=56.89 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 743 (865)
+-.+|-...+|.+.+||++|+.+||-++-..++.+ |..+..|.++- |+.||-.++.+||-.+-..|..
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~--------~s~V~lLses~---N~HVRyGaA~ALGIaCAGtG~~- 623 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--------PSTVSLLSESY---NPHVRYGAAMALGIACAGTGLK- 623 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChhhc--------hHHHHHHhhhc---ChhhhhhHHHHHhhhhcCCCcH-
Confidence 33344445778999999999999998876654333 23333333332 7899999999999988766532
Q ss_pred cchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCC
Q 002921 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (865)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 807 (865)
..+..+-|+..++. .-+|+.|+.+++-+...+.+..-|-+..|-..+.+.+.++..
T Consensus 624 -----eAi~lLepl~~D~~---~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 624 -----EAINLLEPLTSDPV---DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred -----HHHHHHhhhhcChH---HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 22455556666663 568999999999888877777888888888888887766543
No 132
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.11 Score=56.08 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHH---hccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhc
Q 002921 583 FPLLECFTSIAQA---LGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLV 659 (865)
Q Consensus 583 ~~~~~~l~~l~~~---~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 659 (865)
.+.+.|+..+.+. +..+ +--..++..+++.+.. ++..+...++.++.+++-.+++-=..++
T Consensus 395 aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~d--------------p~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 395 AAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMD--------------PEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhC--------------cchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 5666776655554 4444 2334455566666631 2445666788888898887776544555
Q ss_pred ccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhh--HhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 660 AQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL--QARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 660 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.. ..+..+.....+.+..+|..+.+++..+.-.+...+ .++-.--...+.....++ ++.|.+.+...+.++.-
T Consensus 459 ~~-ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~----d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 459 RN-NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP----DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred Hc-CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC----CHHHHHHHHHHHHHhhc
Confidence 43 688888899999999999999999999998887543 333322333344444555 78898888877777654
Q ss_pred h
Q 002921 738 K 738 (865)
Q Consensus 738 ~ 738 (865)
.
T Consensus 534 ~ 534 (678)
T KOG1293|consen 534 N 534 (678)
T ss_pred C
Confidence 3
No 133
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.69 E-value=0.00029 Score=57.13 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHhcc-CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccc
Q 002921 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (865)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~ 513 (865)
++.++..+ +|+++.+|..++++++++.. ..+++.+.+.++|+++.||..|+.+++.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 46677777 89999999999999995532 256788888889999999999999999772
Q ss_pred hhhhHHHHHHHHHHHhcccchhh-HHHHHHHHH
Q 002921 514 LAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIG 545 (865)
Q Consensus 514 ~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~l~ 545 (865)
-+..++.|.+.+++.+... +..+..+++
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2557777788887765544 556666654
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.68 E-value=0.16 Score=56.94 Aligned_cols=142 Identities=17% Similarity=0.110 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHh
Q 002921 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (865)
Q Consensus 700 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (865)
.+...+.|.+.+.+... ....|.+-..+|...+.+.| +.+.|....+++.+++.+.-++ ..++-....++.-
T Consensus 863 RfF~~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D---~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD---VIVRVSTLRTIPM 935 (1030)
T ss_pred HHHHhhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc---cchhhhHhhhhhH
Confidence 45667899999888844 45778888899999998887 4567999999999999998874 4566677777877
Q ss_pred hhhhCCCcccccHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHHhh-CchhhHhhHHHHHHHhhccCCCcc
Q 002921 779 LAWVCPELVSPHMEHFMQPWCIALSMIRD--DTEKEDAFRGLCAMVKA-NPSGALSSLVFMCRAIASWHVRIT 848 (865)
Q Consensus 779 l~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 848 (865)
+....+.....|++.+++.++..=....+ --.|..|+++|..+.+. .+..+.++-+..+.++.....+|.
T Consensus 936 ~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 936 LLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred HHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 77777888888999999998865433332 45799999999999995 556788999999999999999986
No 135
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.64 E-value=0.027 Score=69.90 Aligned_cols=340 Identities=15% Similarity=0.171 Sum_probs=187.7
Q ss_pred CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHH
Q 002921 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGS 203 (865)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~ 203 (865)
|...|.-+-+++.+...+++..++.-|+..|.+++-.+-+.= +..+ ...-++++..+...+.+ .+.++|...++|
T Consensus 1131 W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e--EL~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeC 1206 (1780)
T PLN03076 1131 WSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE--ELAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRC 1206 (1780)
T ss_pred hHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh--hhhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 344555566666665555567778888888888776554310 0000 02235677777776654 577999999999
Q ss_pred HHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh----hhHHHHHHHHhhhcCCC-CHHH
Q 002921 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNKDT-DDDV 278 (865)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----~~l~~l~~~l~~~~~~~-~~~v 278 (865)
+.+++......+..-...++..+-....+.++.+...+++++..+...+-..+. ..+.+++.++....... +.++
T Consensus 1207 v~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nI 1286 (1780)
T PLN03076 1207 VSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDI 1286 (1780)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccc
Confidence 999987654444444455566555555677788888899998887764333221 34556666666555433 4667
Q ss_pred HHHHHHHHHHhhcc--CCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccC---CCCccc-ccccCCCCC
Q 002921 279 ALEACEFWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ---DLKPRF-HSSRLHGSE 352 (865)
Q Consensus 279 ~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~---~i~~~~-~~~~~~~~~ 352 (865)
...|++++..++.. +.........-..-.+.... ....+. .+++.. . .+.+. +.-|.+ ....+.. |
T Consensus 1287 SL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s---~~~~~~--~~~~~~-~-~~~~~~~~lW~pLL~~Ls~l~~-D 1358 (1780)
T PLN03076 1287 SLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSP---QSGKDG--KQESGE-F-TDKDDHLYFWFPLLAGLSELSF-D 1358 (1780)
T ss_pred cHHHHHHHHHHHHHHHhccccccccccccccccccc---cccccc--cccccc-c-ccchhHHHHHHHHHHHHHHHhc-C
Confidence 77888876655332 00000000000000000000 000000 000000 0 00000 000110 0000000 1
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHhhhCcch--------h-hhhHHHHHHhh---cc-C----------------CC
Q 002921 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--------L-PTLMPVIQAKL---SA-S----------------GD 403 (865)
Q Consensus 353 ~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~--------~-~~~~~~l~~~l---~~-~----------------~~ 403 (865)
+ .-.+|..|...|-++...+|..+ + ..++|++...- .. . +.
T Consensus 1359 ----~------RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1359 ----P------RPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred ----C------cHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 0 11389999999988888887533 2 23455543211 00 0 00
Q ss_pred cchhHHHHHHHHHHHHHhchh---hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHH
Q 002921 404 EAWKDREAAVLALGAIAEGCI---KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 480 (865)
..|. .+.+..+|..++.-+. +.+.+.++.++..+..++..+|..+-+.++.|+.++...... ...+..+..+
T Consensus 1429 ~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~----~F~~~~W~~i 1503 (1780)
T PLN03076 1429 DAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH----LFSDEKWLEV 1503 (1780)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc----cCCHHHHHHH
Confidence 1143 5666666666555444 455677888888888899999999999999999998887654 3567888888
Q ss_pred HHHHHHHHcCC
Q 002921 481 LMGLLKRILDT 491 (865)
Q Consensus 481 ~~~l~~~l~d~ 491 (865)
+..+.+.+...
T Consensus 1504 ~~~~~~lf~~T 1514 (1780)
T PLN03076 1504 VLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHh
Confidence 88888777653
No 136
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.028 Score=61.90 Aligned_cols=385 Identities=13% Similarity=0.140 Sum_probs=200.1
Q ss_pred HHHHHHHHhhhcCCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhh-hHHHHHHhhccCChhhhhhhhhcccCCCCCccC
Q 002921 260 LRNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (865)
Q Consensus 260 l~~l~~~l~~~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~ 337 (865)
++.++|.++.+++++ +.++...|+.++..+++. .+....-.++ ..+|+++..+...+ .
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~Ie-y----------------- 268 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTIE-Y----------------- 268 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhhh-h-----------------
Confidence 467888888887764 578999999999999887 3222221221 34566654433211 0
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhh-hHHHHHHhhccCCCcchhHHHHHHHHH
Q 002921 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLAL 416 (865)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~r~~a~~~l 416 (865)
..+...+..+|..|++.-|..+++. -+..+..++.=-. -.....|+...
T Consensus 269 ---------------------------iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS---i~aQR~Alaia 318 (1051)
T KOG0168|consen 269 ---------------------------IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS---IHAQRVALAIA 318 (1051)
T ss_pred ---------------------------hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 0145567888888888777655431 1222223332112 44566777777
Q ss_pred HHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchh-hHHHHHHHHHHHHcCC----
Q 002921 417 GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QFEKVLMGLLKRILDT---- 491 (865)
Q Consensus 417 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~d~---- 491 (865)
..++...+..-..++-+.+|.+.+.|...+..+-..+|.|+.++++.+.+. ++...+ .-+.++....+.+.-.
T Consensus 319 aN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~--~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG--PDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC--hHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 777777765445677788999999999888888999999999999887542 001111 1234444444444422
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHhcccch-----------hhHHHHHHHHHHHHHHhc---cc--
Q 002921 492 NKRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFGKYQR-----------RNLRIVYDAIGTLADAVG---FE-- 554 (865)
Q Consensus 492 ~~~vr~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~-----------~~~~~~~~~l~~l~~~~~---~~-- 554 (865)
+..+.......+..++..+...+.. +...|...+..++..... ..-...++....++.-+. .+
T Consensus 397 s~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i 476 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGI 476 (1051)
T ss_pred cccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccce
Confidence 2223333334444444433322222 334455555555544321 001122333333332221 11
Q ss_pred CC-chhhHhhhhHHHHHHHhcCCCCCcch--------hhHHH-------HHHHHH---------HHhcc---ccccchHH
Q 002921 555 LN-QPVYLDILMPPLIAKWQQLPNSDKDL--------FPLLE-------CFTSIA---------QALGA---GFTQFAQP 606 (865)
Q Consensus 555 ~~-~~~~~~~l~~~l~~~l~~~~~~~~~~--------~~~~~-------~l~~l~---------~~~~~---~~~~~~~~ 606 (865)
|. +--|...+++.--+.+-+.. +++.. .++++ +-+... ..+++ -+..|...
T Consensus 477 ~~~~~~~~~~~~n~~~~~~~~~~-d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~ 555 (1051)
T KOG0168|consen 477 FAVDCSLIYEIVNLADELLWQWR-DDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD 555 (1051)
T ss_pred eehhhhhhcccccccccccccCc-cccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH
Confidence 00 00011111110000000000 00000 01111 000000 01111 23344555
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhh-hhhhcccchHHHHHHHHhcCCChhHHHHHHH
Q 002921 607 VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFA 685 (865)
Q Consensus 607 i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 685 (865)
++|.++++..+.. +.+++-.++.++..++...... +...+.+..+-..+...+...+..|.--|+.
T Consensus 556 llpVLveVYsSsA-------------~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQ 622 (1051)
T KOG0168|consen 556 LLPVLVEVYSSSA-------------NPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQ 622 (1051)
T ss_pred HHHHHHHHHhccC-------------CchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHH
Confidence 6666665555431 5577888888888888765433 2333333334445555666778888888999
Q ss_pred HHHHHHhhchhhhHhhHHH--HHHHHH
Q 002921 686 LLGDLARVCPVHLQARLSD--FLDIAA 710 (865)
Q Consensus 686 ~l~~l~~~~~~~~~~~~~~--~l~~l~ 710 (865)
...-+++.+++.|.+++.+ ++..+.
T Consensus 623 vAEiLmeKlpd~F~~~F~REGV~~~v~ 649 (1051)
T KOG0168|consen 623 VAEILMEKLPDTFSPSFRREGVFHAVK 649 (1051)
T ss_pred HHHHHHHHhHHHhhhhHhhhhHHHHHH
Confidence 8899999999999887643 444443
No 137
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.59 E-value=0.51 Score=60.33 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=125.5
Q ss_pred HhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 002921 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNAC 729 (865)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~ 729 (865)
.++..|.+.+-++..+..++..+++..-.++..+...+|.++...+..+.|++..........+.-+. ...++..++
T Consensus 552 ~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg---~~r~~~~~a 628 (2341)
T KOG0891|consen 552 SLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG---MARTKEESA 628 (2341)
T ss_pred hhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc---hHHhHHHHH
Confidence 33355555565567888888888888899999999999999988887788888877766666555442 123344444
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChH
Q 002921 730 WAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDT 809 (865)
Q Consensus 730 ~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 809 (865)
.-+..++....--+.+|+..++..+++.+.+++ ..+..++..+++.|...++..+..++...+..+.+.+.+..+..
T Consensus 629 ~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~---s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~ 705 (2341)
T KOG0891|consen 629 KLLCELIISSPVLISPYVGPILLVLLPKLQDPS---SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLG 705 (2341)
T ss_pred HHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc---hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhh
Confidence 555555555555567888888999999998884 34556677789999987776676667777888888888877788
Q ss_pred HHHHHHHHHHHHHhh
Q 002921 810 EKEDAFRGLCAMVKA 824 (865)
Q Consensus 810 ~~~~~~~~l~~l~~~ 824 (865)
.+..+.+.+.++...
T Consensus 706 rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 706 KRLAALKALGQLESS 720 (2341)
T ss_pred chhHHHHHhhhhhcc
Confidence 899999999999886
No 138
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.57 E-value=0.0042 Score=60.87 Aligned_cols=217 Identities=14% Similarity=0.071 Sum_probs=134.9
Q ss_pred CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHH-----HHhhhhhCCChhHHHHHHHHHHHHH
Q 002921 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLGAADRHIRSTVGTIVSVVV 121 (865)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~-----~ll~~l~~~~~~vr~~~a~~l~~i~ 121 (865)
++.+..|+.+|.. +.++.++..|...+-+.-. .+..++.|++ .+...|.++++.+|..+..++..++
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aa------f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPFIQEKALIALGNSAA------FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhc--CCChHHHHHHHHHHHhhcc------ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 4455677888865 6788888888887766422 1234444443 5566778899999999999999887
Q ss_pred Hhc-CcCChHHHHHHHHHhhccC--ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHH
Q 002921 122 QLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (865)
Q Consensus 122 ~~~-~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 198 (865)
... ........++.+.+.+.+. +...+.+|+++|..+.-.-..+ ..+...+|.++.++..++..+|.
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~----------~~l~~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH----------HMLANYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh----------hhHHhhHHHHHHHHHcCChHHHH
Confidence 654 3334456777777765553 5577889999998885322111 22455688889999999999999
Q ss_pred HHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhchhh---h----------hh---hH
Q 002921 199 LSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRPSF---L----------EP---HL 260 (865)
Q Consensus 199 ~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~---~----------~~---~l 260 (865)
.++++|..+.+.. ......+ ...+..++.+.+.. +.++...++..+..+.+...+. + .. -.
T Consensus 153 ~vLk~L~nLS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~ 231 (254)
T PF04826_consen 153 QVLKVLVNLSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES 231 (254)
T ss_pred HHHHHHHHhccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH
Confidence 9999999998752 1111111 12344455555433 4555555666665554322111 0 00 11
Q ss_pred HHHHHHHhhhcCCCCHHHHHHH
Q 002921 261 RNLFEYMLQVNKDTDDDVALEA 282 (865)
Q Consensus 261 ~~l~~~l~~~~~~~~~~v~~~a 282 (865)
..+.+.+.....++|++|+.+.
T Consensus 232 ~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 232 SQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHcCCCHHHhhhc
Confidence 2344555555677788877653
No 139
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.57 E-value=0.021 Score=60.36 Aligned_cols=210 Identities=14% Similarity=-0.031 Sum_probs=123.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH
Q 002921 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (865)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 260 (865)
.+..++..+.+.++.||..+.++|+.+-. +...+.+...+.++++.+|..++.++..... +
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---~------ 147 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---D------ 147 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---C------
Confidence 37778888888888888888888875421 1223445555677778888777765554111 1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCC
Q 002921 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (865)
Q Consensus 261 ~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (865)
-.+.+...+++.+..|+..|+.++..+..... .+. +...+..
T Consensus 148 --~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a--------~~~----L~~al~d------------------------ 189 (410)
T TIGR02270 148 --PGPALEAALTHEDALVRAAALRALGELPRRLS--------EST----LRLYLRD------------------------ 189 (410)
T ss_pred --hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc--------hHH----HHHHHcC------------------------
Confidence 11233334568888888888888877754311 111 1111110
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002921 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (865)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (865)
++ -.+|..|...+..+.. .... +.+........ +..+.....+++..
T Consensus 190 ----------------~~------~~VR~aA~~al~~lG~---~~A~----~~l~~~~~~~g---~~~~~~l~~~lal~- 236 (410)
T TIGR02270 190 ----------------SD------PEVRFAALEAGLLAGS---RLAW----GVCRRFQVLEG---GPHRQRLLVLLAVA- 236 (410)
T ss_pred ----------------CC------HHHHHHHHHHHHHcCC---HhHH----HHHHHHHhccC---ccHHHHHHHHHHhC-
Confidence 00 1378888888744422 1222 23333223333 44444433344332
Q ss_pred hchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHH
Q 002921 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (865)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 500 (865)
+ -+.+++.+...++|+. +|..+++++|++..- ..++.++..+.|+ .++..|-
T Consensus 237 ---~------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---------------~av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 237 ---G------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV---------------EAAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred ---C------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------chHHHHHHHhcCc--HHHHHHH
Confidence 1 1256677777788865 899999999976542 4566777778774 3888888
Q ss_pred HHHHHHHH
Q 002921 501 SAFATLEE 508 (865)
Q Consensus 501 ~al~~l~~ 508 (865)
.++..+..
T Consensus 289 eA~~~ItG 296 (410)
T TIGR02270 289 EAFSLITG 296 (410)
T ss_pred HHHHHhhC
Confidence 88887764
No 140
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.55 E-value=0.013 Score=66.55 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=152.2
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
.+.+.+-+.+...+.+.+ |+.|..|+..+..+.+... +....+...+...+-..+.|.|..|-..|+.++..++..
T Consensus 249 di~~ki~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 455566666667777888 9999999999988877666 333455565666666778999999999999999999998
Q ss_pred HhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHH
Q 002921 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (865)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (865)
+... ...|...+++.++..+.+....+|..+..++..++.. ..+..+++.+...+.+.+..........
T Consensus 326 lr~~-----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPL-----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred cchh-----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 7643 6778899999999999999899999888888777762 2355666777777777776666666667
Q ss_pred HHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccc-cccchHHHHH
Q 002921 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG-FTQFAQPVFQ 609 (865)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~-~~~~~~~i~~ 609 (865)
+.......++....-.-+..+.|.++.... |.+.++ ..+.++++.+.+.+|+. +..++..+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 777777666432211456677777666543 345555 67889999999999984 5555555554
No 141
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.53 E-value=0.023 Score=60.14 Aligned_cols=242 Identities=15% Similarity=0.049 Sum_probs=152.3
Q ss_pred HHHHHHhhhhh-CCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 93 YIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 93 ~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
...+.++..|. +++..++..++.++. ..+ =+..+..+.+.+.++++.+|.++...|+.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~~----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------------ 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQE----DALDLRSVLAVLQAGPEGLCAGIQAALGWLG------------ 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---ccC----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC------------
Confidence 34567788884 566777665433332 111 1334888889999999999999998886431
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
.+...+.+...+.+.++.+|..++.+++..... . .+.+...+++++..+|..++.++..+-..
T Consensus 115 ------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~----~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 115 ------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------P----GPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------h----HHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 156678889999999999999998777663211 1 23455556789999999999999877642
Q ss_pred chhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCC
Q 002921 252 RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (865)
Q Consensus 252 ~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~ 331 (865)
+ ..+ .+.....+.+++||..|+..+..+... ... ..+......
T Consensus 178 --~----a~~----~L~~al~d~~~~VR~aA~~al~~lG~~----~A~--------~~l~~~~~~--------------- 220 (410)
T TIGR02270 178 --L----SES----TLRLYLRDSDPEVRFAALEAGLLAGSR----LAW--------GVCRRFQVL--------------- 220 (410)
T ss_pred --c----chH----HHHHHHcCCCHHHHHHHHHHHHHcCCH----hHH--------HHHHHHHhc---------------
Confidence 1 112 233457889999999999888666332 111 111110000
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHH
Q 002921 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREA 411 (865)
Q Consensus 332 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~ 411 (865)
..+..+..+...+... |.. ..++.+...++++ ..|.+
T Consensus 221 -------------------------------~g~~~~~~l~~~lal~----~~~---~a~~~L~~ll~d~-----~vr~~ 257 (410)
T TIGR02270 221 -------------------------------EGGPHRQRLLVLLAVA----GGP---DAQAWLRELLQAA-----ATRRE 257 (410)
T ss_pred -------------------------------cCccHHHHHHHHHHhC----Cch---hHHHHHHHHhcCh-----hhHHH
Confidence 0011222223333221 322 4455555555543 37899
Q ss_pred HHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHH
Q 002921 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (865)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (865)
++.++|.+.. +..++.++..+.|+. ++..|-+++..++.
T Consensus 258 a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 258 ALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 9999998754 224667777787754 89999888887764
No 142
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=97.51 E-value=0.048 Score=56.03 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccc
Q 002921 583 FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS 662 (865)
Q Consensus 583 ~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 662 (865)
..++.+++.++..+|..+.++++.++..+++.--.=. .+++
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI--------------------------------~~d~------- 130 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMI--------------------------------NKDF------- 130 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHH--------------------------------SSTS-------
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--------------------------------Hhhh-------
Confidence 4688888899999988888888887776543211100 0000
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH----hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHh
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ----ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 738 (865)
..-++.|..-+.++..+..++...+. .....++..+...+++. +.++.+.++.++..++..
T Consensus 131 -----------~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~----~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 131 -----------EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT----NREISETGLNILLELLNN 195 (319)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS----SHHHHHHHHHHHHHHHHH
T ss_pred -----------hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence 13467777777788888877765553 23556778888888887 789999999999999877
Q ss_pred ccc---c-----ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 739 ARQ---E-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 739 ~~~---~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
... + +..|...++..+..++.++. ++..-...+..+.+|..
T Consensus 196 ~~~~~~~~~~~F~~~y~~~il~~if~vltD~~--Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 196 VSKTNPEFANQFYQQYYLDILQDIFSVLTDSD--HKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT---GGGHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHH
Confidence 654 1 24567788888888988885 56666666667766663
No 143
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.50 E-value=0.43 Score=59.81 Aligned_cols=304 Identities=14% Similarity=0.079 Sum_probs=180.1
Q ss_pred HHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcch--hhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccc
Q 002921 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR--EQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEE 513 (865)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~ 513 (865)
++...-.+++..++.-|+..|.+++..+-+. ++.. .+=+.++..+...+.. .+..||+.+..++..++......
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~---eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLER---EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcch---hhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 3344345667788888888888888765431 1111 1224566777666664 47899999999999999877665
Q ss_pred hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc--hhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHH
Q 002921 514 LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ--PVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFT 590 (865)
Q Consensus 514 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~ 590 (865)
+..=-..++..+.....+........+++++..+....=..+.. +..+..++..+.+...+. .+.++ ..+++.+.
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~--~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR--FNKDISLNAIAFLR 1295 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc--CcccccHHHHHHHH
Confidence 55544566666665555555566677888887766421110000 012233333333333221 12333 34555555
Q ss_pred HHHHHhccc------------------------------cccc--hHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhH
Q 002921 591 SIAQALGAG------------------------------FTQF--AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV 638 (865)
Q Consensus 591 ~l~~~~~~~------------------------------~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 638 (865)
.++..+-.. +... ...++=.++..|..-. . +.+.++|.
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~---~-------D~RlEVR~ 1365 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELS---F-------DPRPEIRK 1365 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHh---c-------CCcHHHHH
Confidence 443333110 0000 0112222222232211 1 23678999
Q ss_pred hhhhhhhHHHHHhhhhhhh-hccc---chHHHHHHHHhc-----------------CCC--------hhHHHHHHHHHHH
Q 002921 639 CCLDLLSGLAEGLGSGIES-LVAQ---SNLRDMLLQCCM-----------------DDA--------SDVRQSAFALLGD 689 (865)
Q Consensus 639 ~al~~l~~l~~~~~~~~~~-~~~~---~~l~~~l~~~l~-----------------~~~--------~~vr~~a~~~l~~ 689 (865)
.|++++-.++...|..|.+ +|.. .-++|++-..-. +.+ .+....|+..+.+
T Consensus 1366 ~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvd 1445 (1780)
T PLN03076 1366 SALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVD 1445 (1780)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998876 4432 235555433210 000 1233456667777
Q ss_pred HHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHhc
Q 002921 690 LARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISP-IVMTVVLCLVPILK 759 (865)
Q Consensus 690 l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~il~~l~~~l~ 759 (865)
+...+-+.+.+.++.++..+..++..+ +..+-+-++.|+-.++...+..|.+ ....+...+..++.
T Consensus 1446 Lft~fFd~L~~~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1446 LFVKFYPTVNPLLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 777777788888999999999999887 7788888999999999998888764 56666666666554
No 144
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.29 Score=55.33 Aligned_cols=389 Identities=12% Similarity=0.087 Sum_probs=196.3
Q ss_pred HHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC
Q 002921 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (865)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~ 491 (865)
.+..+|.+++..++.+.+.+-..+-.++..+.++++.++..|-.|+..++..+.-..-+.......+-++..+-..++..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 45667777777777776666665556777788999999999999999988876421000011222233344444444421
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH
Q 002921 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (865)
Q Consensus 492 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (865)
.+-.++-..+..++...+....|++..+++.+...++.+....-...+..+..+....+..+.+. .++..+.+.
T Consensus 648 --~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~----~il~~~~d~ 721 (1014)
T KOG4524|consen 648 --GMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYIND----EILGHIADQ 721 (1014)
T ss_pred --CCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccc----hhhHHHHHH
Confidence 12223334566667777788899999999999999988766544444555666666665443210 222222221
Q ss_pred HhcCCCC-CcchhhHHHHHHHHHHHhccccccchHHHHHHHH-HHHHHHHHHhhcccccCCCC---CcchhHhhhhhhhH
Q 002921 572 WQQLPNS-DKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCI-NIIQTQQLAKVDSVAAGAQY---DKEFVVCCLDLLSG 646 (865)
Q Consensus 572 l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~-~~l~~~~~~~~~~~~~~~~~---~~~~~~~al~~l~~ 646 (865)
....... ..++...+.-..+.... +...+.+... +.+.+. ....+++.+.++. +.+--..-
T Consensus 722 ~~~~~~k~l~e~p~~~~e~~n~~~d-------~~~~l~~~~~e~~~~~~-~~~~~dnee~~e~~~e~edens~~------ 787 (1014)
T KOG4524|consen 722 HISQSTKVLNELPTQVKELINDEND-------LKDDLEPSNFEKDFASK-LREPDDNEEPEEREEEVEDENSEY------ 787 (1014)
T ss_pred HHHHHHHHhhcchhhHHHhhhhHHH-------HHHhhhhHHHHHHhhhh-ccCCCcccCcCCCCCCccccccCC------
Confidence 1110000 00000111111111111 1111111110 011100 0000111000000 00000000
Q ss_pred HHHHhhhhhhhhccc-----chHHHHHHHHhcCCChhHHHHHHHHHHH---HHhhchhhhHhhHHHHHHHHHHhcCCCCC
Q 002921 647 LAEGLGSGIESLVAQ-----SNLRDMLLQCCMDDASDVRQSAFALLGD---LARVCPVHLQARLSDFLDIAAKQLNTPKL 718 (865)
Q Consensus 647 l~~~~~~~~~~~~~~-----~~l~~~l~~~l~~~~~~vr~~a~~~l~~---l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 718 (865)
.+..|..|. ..++.-....+++.+-.+|-.|+.++.. +...+.+.+.|-+...+|.+..++...
T Consensus 788 ------~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k-- 859 (1014)
T KOG4524|consen 788 ------TDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK-- 859 (1014)
T ss_pred ------CCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC--
Confidence 001122221 1244444445678888899999888874 445566888999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHhcCch--hhhhhHH-HHH-----HHHHHhhhhhCC--Ccc
Q 002921 719 KETVSVANNACWAIGELAVKARQEI-SPIVMTVVLCLVPILKHSE--ELNKSLI-ENS-----AITLGRLAWVCP--ELV 787 (865)
Q Consensus 719 ~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~il~~l~~~l~~~~--~~~~~~~-~~~-----~~~l~~l~~~~~--~~~ 787 (865)
++-+-..|+.++..+....|+=+ +.++..+++.+-..+.+.- ...+..+ +.+ ..++..+....+ +..
T Consensus 860 --~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~ 937 (1014)
T KOG4524|consen 860 --DPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELA 937 (1014)
T ss_pred --chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecc
Confidence 67788889999999888776322 1223333333222222110 0011111 111 112222221111 011
Q ss_pred cccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhH
Q 002921 788 SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL 830 (865)
Q Consensus 788 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 830 (865)
...++.+.....-.+.......-...++.++..++..++++..
T Consensus 938 ~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~~~V~~ekp~~i 980 (1014)
T KOG4524|consen 938 GVSLHMVAEGVKIYLSLIQPQVLQEIARSCFLDLVPVEKPQRI 980 (1014)
T ss_pred cccHHHHhhhhhhhHHhcChHHHHHHHHHHHHHHhccCCCccc
Confidence 1224555555555566666666688888888889998775443
No 145
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.48 E-value=0.0032 Score=61.64 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=116.3
Q ss_pred HHHHHHhhcc-CCCcchhHHHHHHHHHHHHHhchhhhhhccHH--HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002921 391 MPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 391 ~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
++.+..+++. .+ +..++.++.+++..+..... ...+. ..++.+...+.+|++.+|..|++++.+++....
T Consensus 14 l~~Ll~lL~~t~d---p~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-- 86 (254)
T PF04826_consen 14 LQKLLCLLESTED---PFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-- 86 (254)
T ss_pred HHHHHHHHhcCCC---hHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--
Confidence 3445555664 45 89999999999997653321 12222 267788899999999999999999998876543
Q ss_pred hCCCcchhhHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002921 468 IGHQNGREQFEKVLMGLLKRIL-DT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (865)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~l~-d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 545 (865)
....++..++.+.+.+. ++ +..++..+..+|.++.-. ......+...++.++.++...+...+..++.++.
T Consensus 87 -----n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 87 -----NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred -----hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22333444555554333 22 678999988988887522 2222223334555567777777777777788877
Q ss_pred HHHHHh--cccCCchhhHhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHhccc
Q 002921 546 TLADAV--GFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAG 599 (865)
Q Consensus 546 ~l~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~l~~~~~~~ 599 (865)
.++..- ..+. .-.+.+..++..+... ..++ +..++..+.++...++.+
T Consensus 160 nLS~np~~~~~L----l~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 160 NLSENPDMTREL----LSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HhccCHHHHHHH----HhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhhCcc
Confidence 776521 1110 1123344555555442 2333 367777777777777654
No 146
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.46 Score=57.04 Aligned_cols=370 Identities=14% Similarity=0.100 Sum_probs=194.1
Q ss_pred CHhHHHHHHHHHhh--hhhCCChhHHHHHHHHHHHHHHhcCc-C-----ChHHHHHHHHHhhc---cC-ChhHHhHHHHH
Q 002921 87 SPSNQQYIKSELLP--CLGAADRHIRSTVGTIVSVVVQLGGI-A-----GWLELLQALVTCLD---SN-DINHMEGAMDA 154 (865)
Q Consensus 87 ~~~~~~~i~~~ll~--~l~~~~~~vr~~~a~~l~~i~~~~~~-~-----~w~~ll~~l~~~l~---~~-~~~~r~~al~~ 154 (865)
..+....++..|++ .|.+++..||.-.|.|++.|.+...| . +..+++..++..+. +. +|.... -..+
T Consensus 42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r-~~~l 120 (1266)
T KOG1525|consen 42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKR-YFYL 120 (1266)
T ss_pred hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhh-HHHH
Confidence 33444555666665 56789999999999999999998632 2 33444444444332 22 332111 1222
Q ss_pred HHHHHhhc-hhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC
Q 002921 155 LSKICEDI-PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (865)
Q Consensus 155 L~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 233 (865)
|..+.... .-.+..+.. +..+.+++..++..+.++.+.--..-...+..++... ...-..++..++.-+-.+
T Consensus 121 letl~~~k~~l~~~l~d~---~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~----d~v~~e~L~~ll~~lv~~ 193 (1266)
T KOG1525|consen 121 LETLAKVKFCLLMLLEDC---QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE----DTVQSELLDVLLENLVKP 193 (1266)
T ss_pred HHHHHHhHHHheeeccch---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHhccC
Confidence 33332222 111111100 2345667777777776665533333344444443321 111123355555444444
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhh
Q 002921 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (865)
Q Consensus 234 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~ 313 (865)
.++....+...=..+++.+++.+.+.+...+...+..-...--..+....+.+..+-.. ....+-.++|.+...
T Consensus 194 ~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~------~p~ll~~vip~l~~e 267 (1266)
T KOG1525|consen 194 GRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI------APQLLLAVIPQLEFE 267 (1266)
T ss_pred CCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh------hHHHHHHHHHHHHHH
Confidence 45555566666666666666666555555444433222111111222222333322111 122233444444332
Q ss_pred ccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---chhhhh
Q 002921 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTL 390 (865)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~ 390 (865)
+... ++ ..|..|..+++.|....+. +..+.+
T Consensus 268 L~se----------------------------------------~~------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~ 301 (1266)
T KOG1525|consen 268 LLSE----------------------------------------QE------EVRLKAVKLVGRMFSDKDSQLSETYDDL 301 (1266)
T ss_pred Hhcc----------------------------------------hH------HHHHHHHHHHHHHHhcchhhhcccchHH
Confidence 2221 01 2699999999999877754 335666
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHh--hHHHHhhhh
Q 002921 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR--FSKFIVQDI 468 (865)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~ 468 (865)
+..+...+.+.. ..+|.+++.....+.-..+. ..........-...|.++.+|.+...++.. +.+.
T Consensus 302 ~~~fl~r~~D~~---~~vR~~~v~~~~~~l~~~~~----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~----- 369 (1266)
T KOG1525|consen 302 WSAFLGRFNDIS---VEVRMECVESIKQCLLNNPS----IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKF----- 369 (1266)
T ss_pred HHHHHHHhccCC---hhhhhhHHHHhHHHHhcCch----hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHh-----
Confidence 666667777877 89999998888776554332 111222222223344455555443222222 2221
Q ss_pred CCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--h-----ccchhhhHHHHHHHHHHHhccc
Q 002921 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE--A-----AEELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~--~-----~~~~~~~~~~i~~~l~~~l~~~ 532 (865)
...+...++..+.+.+.|....||..|+..|..+.++ + +..+.+-+..|-..++.++-..
T Consensus 370 ----~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~ 436 (1266)
T KOG1525|consen 370 ----KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYEN 436 (1266)
T ss_pred ----hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhc
Confidence 2334444888888999999999999999999988875 1 3344444555555555555443
No 147
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.47 E-value=0.3 Score=54.85 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=102.3
Q ss_pred CCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc------c------CCC
Q 002921 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD------S------DVP 171 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~------~------~~~ 171 (865)
+..+.||..+...+..+........--.++..+.....++.-.+++.+-.++..-..-+.+... + ++.
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~~ 562 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDFK 562 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhcc
Confidence 5678899999888888887653333233444443333333233443333222111111111100 0 000
Q ss_pred C-CC----CcchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002921 172 G-LA----ECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (865)
Q Consensus 172 ~-~~----~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 245 (865)
. +. ...-..++-++.+.++ +....++..|+..+.++..+.... ..++..+-.|-.+..++-..+|+.++..|
T Consensus 563 ~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~--~~fe~~L~iLq~lCrd~~vsvrk~~~~Sl 640 (1529)
T KOG0413|consen 563 LKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA--SKFEVVLSILQMLCRDRMVSVRKTGADSL 640 (1529)
T ss_pred hhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchh--hcchhHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0 00 1223566777788777 666789999999999988765322 22333344444556777788999999999
Q ss_pred HHHHhhchhhh---hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 246 NLLIEVRPSFL---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 246 ~~l~~~~~~~~---~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
+.+....|..+ ..++..+++ .+.+.+..+...|..++..+
T Consensus 641 tel~~~~pr~~~~~~~wl~~li~----~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 641 TELMLRDPRLFSLSSKWLHTLIS----MLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHhhCchhhhhhHHHHHHHHH----HHhccHHHHHHHHHHHHHHH
Confidence 99888777665 223334443 34566666777777765443
No 148
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.45 E-value=0.0082 Score=68.18 Aligned_cols=205 Identities=16% Similarity=0.199 Sum_probs=149.9
Q ss_pred HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002921 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (865)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (865)
.+-+.+...+.+.+|..|..|+..+..+++.-..... +.+...+...+-..+.|.+..|...|+.++..+...
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-------~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-------KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-------cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3456677778889999999999999888876551111 123344444455556778889999999999999998
Q ss_pred ccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhh
Q 002921 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (865)
Q Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~ 290 (865)
++..+.++...+.+.++..+.+....+|..+..++..+... ..+..+.+.+...+.+..+.++..+..++....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 88888888888899999988888888999988998888873 456677788888889999999999888877765
Q ss_pred ccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 002921 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (865)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~ 370 (865)
.........+.-...++|.++....++.. .+|.+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~----------------------------------------------~VR~A 433 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDK----------------------------------------------DVRKA 433 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcH----------------------------------------------HHHHH
Confidence 54211222334455666666544332211 28999
Q ss_pred HHHHHHHHHhhhCcchhhhhHHHH
Q 002921 371 SAAALDVLSNVFGDEILPTLMPVI 394 (865)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~~~~~l 394 (865)
|..++..+.+..|+.++..++..+
T Consensus 434 a~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 434 ALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhh
Confidence 999999999999987765554444
No 149
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.35 Score=53.35 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc-CCCcchhHHHHHHHHHHHHHhchh-----------hhhhccH----
Q 002921 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCI-----------KGLYPHL---- 431 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~-----------~~~~~~l---- 431 (865)
|+.|...|+.+++.+...+...-++.+.+.++. ..+ ...-..++..+..+...-. +.+...+
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~f 117 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD--PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQF 117 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC--HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHH
Confidence 999999999999999766554445555555542 211 5556666666655543221 1111111
Q ss_pred ---HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 432 ---SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 432 ---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
++.+..++..+..-+-.||..++..++.+...-+... +.....++.-+..++..+.|....+|..+...|..+.+
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~--q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL--QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH--HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 2245567777778889999999999999887654321 01122345667778888899989999999999998887
Q ss_pred Hhccc-hhhhHHHHHHHHHHHhcccc-hh---hHHHHHHHHHHHHH
Q 002921 509 EAAEE-LAPRLEIILQHLMMAFGKYQ-RR---NLRIVYDAIGTLAD 549 (865)
Q Consensus 509 ~~~~~-~~~~~~~i~~~l~~~l~~~~-~~---~~~~~~~~l~~l~~ 549 (865)
..+.. -.--++.++.+|+.++.... .+ +..-++-.+..+.+
T Consensus 196 ~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 196 DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 65321 11246888999999987653 11 33334444444443
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.51 Score=54.73 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=117.6
Q ss_pred CcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHH
Q 002921 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (865)
Q Consensus 633 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 711 (865)
++++..+|.-+++.++-.... |.. .-+|+++..++ .+++.+|..++-.+|+++-.++.-+.||.+. +.+
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~----fce--s~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~----Ly~ 1005 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAE----FCE--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEH----LYR 1005 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHH----HHH--HHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHH----HHH
Confidence 456777777777776643222 222 25666776666 6889999999999999999988777787664 557
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccH
Q 002921 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (865)
Q Consensus 712 ~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 791 (865)
.+.++ +..+|.+|...+..++.+.--.++.|+ ......+.++. +.+++-|=.++-.+..++ +. +
T Consensus 1006 rL~D~----~~~vRkta~lvlshLILndmiKVKGql----~eMA~cl~D~~---~~IsdlAk~FF~Els~k~-n~----i 1069 (1251)
T KOG0414|consen 1006 RLRDE----SPSVRKTALLVLSHLILNDMIKVKGQL----SEMALCLEDPN---AEISDLAKSFFKELSSKG-NT----I 1069 (1251)
T ss_pred HhcCc----cHHHHHHHHHHHHHHHHhhhhHhcccH----HHHHHHhcCCc---HHHHHHHHHHHHHhhhcc-cc----h
Confidence 77887 789999999999999876543333333 55666777774 567776767777777665 22 3
Q ss_pred HHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhCc
Q 002921 792 EHFMQPWCIALSMIR-DDTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 792 ~~~l~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~ 826 (865)
-+++|.++..|++.+ +.+.-+.++..|..+++.++
T Consensus 1070 ynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1070 YNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDE 1105 (1251)
T ss_pred hhhchHHHHhhccCcccchhhHHHHHHHHHHhcccc
Confidence 456677777777752 23345578888888888765
No 151
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.34 E-value=0.00022 Score=43.90 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
++|.+++.++|+++.||.+|+++++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 152
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.34 E-value=0.01 Score=54.30 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=106.8
Q ss_pred hccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Q 002921 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATL 506 (865)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~al~~l 506 (865)
...++..+..+.+.++++++.-|+.++..++..++..+.. .........+..++..++.+ .+.+++.++.++..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3456677788889999999999999999999888876322 24566788888888888865 567899999999999
Q ss_pred HHHh-------ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH
Q 002921 507 EEEA-------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (865)
Q Consensus 507 ~~~~-------~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (865)
+... ++...|.++.+++.+++.+++ ......+++++..+....+..|. |+..++-..+...
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r--p~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR--PFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc--chHHHHHHHHHHH
Confidence 9764 245689999999999999886 34556788999999988887777 7777766555443
No 153
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.32 E-value=0.16 Score=53.44 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCC
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (865)
+|..|...++.+.... ..+.+.+...+.+++ |.+|..++..++.+... ...+.+...+.+.+
T Consensus 196 vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~---~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~ 257 (335)
T COG1413 196 VRRAAASALGQLGSEN-----VEAADLLVKALSDES---LEVRKAALLALGEIGDE----------EAVDALAKALEDED 257 (335)
T ss_pred HHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCC---HHHHHHHHHHhcccCcc----------hhHHHHHHHHhccc
Confidence 7888888887666544 244556666777777 99999988888876432 23445666677777
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
..++..+....+.+ ........+...+.|....++..+..++..+..
T Consensus 258 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 258 VILALLAAAALGAL---------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHHhccc---------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 77776665444411 011222334455566677777777777765544
No 154
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.31 E-value=0.24 Score=53.83 Aligned_cols=288 Identities=13% Similarity=0.101 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCCc----HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcC
Q 002921 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (865)
Q Consensus 12 ~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~-~~p~~----~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~ 86 (865)
++.+....+|.++.. +.. .++=|-+.+-.+. ..|+. +..++.++. +.+..+|..|..-|-...+ =
T Consensus 20 ~~~~~y~~il~~~kg-~~k-~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck-----~ 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG-SPK-EKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE---DEDVQIRKQAIKGLPQLCK-----D 89 (556)
T ss_dssp GGHHHHHHHHHGGGS--HH-HHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT----SSHHHHHHHHHHGGGG-------T
T ss_pred cCHHHHHHHHHHccC-CHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhHHHHHH-----h
Confidence 455667777777775 344 5666667777754 56764 556677765 6789999999766532222 2
Q ss_pred CHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhc
Q 002921 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (865)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (865)
.++....+-..|.++|...++..+..+-.++..+.+.++......++..+... .+.+..+|+.++..|..=+..++..+
T Consensus 90 ~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 90 NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp --T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 45566778889999999888888888889999999998777777777776643 24567889998888865555554432
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh--C----CCCHHHHHH
Q 002921 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--N----DPSAEVRKL 240 (865)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~----~~~~~~r~~ 240 (865)
... + +..-..++..+.+.|+|-..+-=...+..|..+-.+....-......+++.+.... . ..+.+....
T Consensus 169 ~~p--~--~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idr 244 (556)
T PF05918_consen 169 LTP--Q--KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDR 244 (556)
T ss_dssp S-------HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHH
T ss_pred hhc--h--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 210 0 11234556677778877443222223333333322110111222333444444322 1 124455555
Q ss_pred HHHHHHHHHhhchhh--hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhcc
Q 002921 241 VCAAFNLLIEVRPSF--LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (865)
Q Consensus 241 ~~~~l~~l~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~ 315 (865)
.+.|+..-...+..- -..++.-+...++..+.+-.++.+...+..+..++...... .....++.++..+..+|-
T Consensus 245 li~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~-d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 245 LISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQ-DARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT-----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHHHhCC
Confidence 566655433221111 01222222223333344445566776677766666552112 245566666777666555
No 155
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.31 E-value=0.47 Score=53.45 Aligned_cols=149 Identities=14% Similarity=0.130 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 002921 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (865)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~ 756 (865)
+.+|..++-+++.++..-+.- ....+|.+.+.|...+ ...+|.|.+.++|.++.+...-...| ++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~L----aKr~~P~lvkeLe~~~---~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL----AKRLMPMLVKELEYNT---AHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhh---HHHHhcceeeeehhhHHHHHHHHHHh----hHHHHH
Confidence 346777888888888775532 3345666666666543 56789999999999998875433334 456667
Q ss_pred HhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh-CchhhHhhHHH
Q 002921 757 ILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA-NPSGALSSLVF 835 (865)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~ 835 (865)
.|.++. +-+|..++..++||....- ..+-..++-.|+..+-+ .+...+..+=-.+..+++. +|.....+|..
T Consensus 1014 ~L~Dp~---~iVRrqt~ilL~rLLq~~~---vKw~G~Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1014 SLCDPS---VIVRRQTIILLARLLQFGI---VKWNGELFIRFMLALLD-ANEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HhcCch---HHHHHHHHHHHHHHHhhhh---hhcchhhHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 778884 5688889999999997521 12223333344444433 2344666677777888876 77766666666
Q ss_pred HHHHhhcc
Q 002921 836 MCRAIASW 843 (865)
Q Consensus 836 ~~~~~~~~ 843 (865)
.+.++-+|
T Consensus 1087 ~i~~ln~~ 1094 (1529)
T KOG0413|consen 1087 YIIALNQA 1094 (1529)
T ss_pred HHHHHHHH
Confidence 66665443
No 156
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.25 E-value=0.43 Score=51.77 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=112.1
Q ss_pred HHHHHHHHhcC----CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002921 664 LRDMLLQCCMD----DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (865)
Q Consensus 664 l~~~l~~~l~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 739 (865)
+-|++.....+ .++.+..+|.-++..+.--..+-+..+++-++..+.+ .+ ++.+|.||+.++|.+....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek---~p----~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEK---HP----IPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---CC----Ccceeccceeeccccceeh
Confidence 55666555444 6888888888777766544333444454444444433 33 6789999999999988654
Q ss_pred cccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 002921 740 RQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLC 819 (865)
Q Consensus 740 ~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~ 819 (865)
. -.++.....+...|.+.+ ..++.++..++..++..+.-.+..+++. +...|.+ .|.+....|-..+.
T Consensus 966 N----~~~de~t~yLyrrL~De~---~~V~rtclmti~fLilagq~KVKGqlg~----ma~~L~d-eda~Isdmar~fft 1033 (1128)
T COG5098 966 N----TTADEHTHYLYRRLGDED---ADVRRTCLMTIHFLILAGQLKVKGQLGK----MALLLTD-EDAEISDMARHFFT 1033 (1128)
T ss_pred h----hhhHHHHHHHHHHhcchh---hHHHHHHHHHHHHHHHccceeeccchhh----hHhhccC-CcchHHHHHHHHHH
Confidence 3 244555666777787763 6799999999999998776667766644 3333333 45556666666666
Q ss_pred HHHhhCchhhHhhHHHHHHHhhccCCCcc--HHHHHHHHHhc
Q 002921 820 AMVKANPSGALSSLVFMCRAIASWHVRIT--LHLILLSVIFF 859 (865)
Q Consensus 820 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 859 (865)
.+..... .+-+++-.|+..+-+...-.+ .|.|++-|..+
T Consensus 1034 ~~a~KdN-t~yn~fidifs~ls~~ae~g~e~fk~II~FLt~f 1074 (1128)
T COG5098 1034 QIAKKDN-TMYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDF 1074 (1128)
T ss_pred HHHhccc-chhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHH
Confidence 6655433 455666666666654444343 77887766544
No 157
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.23 E-value=0.26 Score=51.82 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=123.5
Q ss_pred CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC
Q 002921 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (865)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~ 127 (865)
.....+...+. +.+..+|..|+..+... .-......+...+.+.++.+|..++.+++.+-.
T Consensus 43 ~~~~~~~~~l~---~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 43 EAADELLKLLE---DEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hhHHHHHHHHc---CCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----
Confidence 35566777776 34899999999874211 112344677788889999999999986665432
Q ss_pred ChHHHHHHHHHhhc-cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCC------------H
Q 002921 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH------------T 194 (865)
Q Consensus 128 ~w~~ll~~l~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~ 194 (865)
+..++.+...+. +++..+|..+..+|+.+-.. .-+..++..+++.. .
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------------------~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDE------------------RALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch------------------hhhHHHHHHhccchhhhhhhhccchHH
Confidence 556666666666 68899999999999766432 11344455555543 2
Q ss_pred HHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCC
Q 002921 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (865)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~ 274 (865)
.+|..+...++.+... ...+.+...+.+.+..+|..+...+..+.... ..+...+.....+.
T Consensus 164 ~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 4666666666655431 12344555566777789999998888777543 34445566677888
Q ss_pred CHHHHHHHHHHHHHh
Q 002921 275 DDDVALEACEFWHSY 289 (865)
Q Consensus 275 ~~~v~~~a~~~l~~l 289 (865)
+..+|..++..+..+
T Consensus 226 ~~~vr~~~~~~l~~~ 240 (335)
T COG1413 226 SLEVRKAALLALGEI 240 (335)
T ss_pred CHHHHHHHHHHhccc
Confidence 888998888776654
No 158
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.011 Score=57.21 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=108.9
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002921 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (865)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (865)
+......+.+.+ |..+-.++..+..+++.-++.+.+.+..++..+++.++++...|-++||.+++.+...+...
T Consensus 90 l~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--- 163 (334)
T ss_pred HHHHHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333344566677 99999999999999998888899999999999999999999999999999999999887643
Q ss_pred CcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Q 002921 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (865)
Q Consensus 471 ~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (865)
..+.++..+..|+..-.+.+..||+.|-.+|..++..... ..+++.|...++.....++..+.-+.......
T Consensus 164 --i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 164 --IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred --HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 3445666666666555556788999999999988876432 23455555666666555555444444444433
Q ss_pred hc
Q 002921 551 VG 552 (865)
Q Consensus 551 ~~ 552 (865)
+|
T Consensus 236 l~ 237 (334)
T KOG2933|consen 236 LG 237 (334)
T ss_pred cc
Confidence 33
No 159
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.041 Score=55.08 Aligned_cols=187 Identities=18% Similarity=0.118 Sum_probs=111.2
Q ss_pred CcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH-HHHHHHHH
Q 002921 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAK 711 (865)
Q Consensus 633 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~ 711 (865)
+.+-++.+++-+..+++.++... .+.+-..+.+++. ++++.+..+|..|.+++|.++.+.+..-...++ ..++.+.+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 33446678888888888776532 2332212444444 899999999999999999999998743222222 15556666
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHhccccccchH--HHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccc
Q 002921 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIV--MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSP 789 (865)
Q Consensus 712 ~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 789 (865)
.+..++ +.++|..|.++++.++.+.+.....++ .. +..+.+++.+... ....+..++..++.+....+..-.-
T Consensus 174 ~ls~~~---~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~-~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 174 ILSSDD---PNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNT-SVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHccCC---CchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhH
Confidence 666543 568999999999999988753322221 11 4556777766421 2334455666666666533221111
Q ss_pred cHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCc
Q 002921 790 HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 790 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 826 (865)
.-+..++.....+...-+.+.+..++.+++.++..-+
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 1122233333333333456677778888888877633
No 160
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=1 Score=54.25 Aligned_cols=360 Identities=12% Similarity=0.059 Sum_probs=189.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCC--HhHHHHHHHHHhh---hhhCCChhHHHHHHHHHHHHHHh-------c--CcC
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMS--PSNQQYIKSELLP---CLGAADRHIRSTVGTIVSVVVQL-------G--GIA 127 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~--~~~~~~i~~~ll~---~l~~~~~~vr~~~a~~l~~i~~~-------~--~~~ 127 (865)
+.|..+|.+-|.++...++-.-...| .+....|...++. +|.+....--.....++-+++.. + ..+
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 78889999999999988876555433 3344555555554 44444222222222333333332 1 234
Q ss_pred ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC----CCHHHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS----PHTSLRKLSLGS 203 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~vr~~a~~~ 203 (865)
-.++++..+...++.+.+.....-..++..+....... -..++..++.-|-. ....-+..|-.+
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v------------~~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTV------------QSELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 55677777777776666555555455555555543321 14445554444443 344555555555
Q ss_pred HHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHH
Q 002921 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (865)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~ 283 (865)
+..+... +.+.+..++...+..-...-...+....+.+..+-...|+. +-.++|.+..-+...++++|..|.
T Consensus 209 i~~~a~~----~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~ 280 (1266)
T KOG1525|consen 209 IERCADN----LEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAV 280 (1266)
T ss_pred HHHhhhh----hchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHH
Confidence 5555544 34444444444333222112334455566666666665554 345666666667778889999999
Q ss_pred HHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccc
Q 002921 284 EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (865)
Q Consensus 284 ~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~ 363 (865)
..++.+...+... +..-.+.++...+..+.+.
T Consensus 281 ~lvg~~~~~~~~~--l~~~~~~~~~~fl~r~~D~---------------------------------------------- 312 (1266)
T KOG1525|consen 281 KLVGRMFSDKDSQ--LSETYDDLWSAFLGRFNDI---------------------------------------------- 312 (1266)
T ss_pred HHHHHHHhcchhh--hcccchHHHHHHHHHhccC----------------------------------------------
Confidence 9988876552221 1122233333333222211
Q ss_pred cccHHHHHHHHHHHHHhhhCcchhhh-hHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc
Q 002921 364 VWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (865)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 442 (865)
...+|..+.+....+....+...-.. +.-.+. ..+.| ..+|.....++..+.. .+.-..+.+.++..+...+
T Consensus 313 ~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~--~~~~D---~~~rir~~v~i~~~~v--~~~~l~~~~~ll~~~~eR~ 385 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLLNNPSIAKASTILLALR--ERDLD---EDVRVRTQVVIVACDV--MKFKLVYIPLLLKLVAERL 385 (1266)
T ss_pred ChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHH--hhcCC---hhhhheeeEEEEEeeh--hHhhhhhhHHHHHHHHHHH
Confidence 11267777777766555544321111 111111 12333 4444443333322211 1112244455788888999
Q ss_pred CCCChHHHHHHHHHHHhhHHH-Hhh-hhCCCcchhhHHHHHHHHHHHHcCCCHHHH
Q 002921 443 DDKFPLIRSISCWTLSRFSKF-IVQ-DIGHQNGREQFEKVLMGLLKRILDTNKRVQ 496 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr 496 (865)
.|..+.||..|+.-+.++.+. +.. .-+.....+.+..+-..++..+-..+...|
T Consensus 386 rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 386 RDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 999999999999999988885 211 111122333444555566665554433334
No 161
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.15 E-value=0.0039 Score=56.41 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHH---HHHhc
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l---~~~~~ 552 (865)
++..++.+++.+...+..-+--|...+..+++. .++.+.|.+++++..+..++++.+..+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567888888888876666666777788888888 78889999999999999999999999999999999998 66788
Q ss_pred ccCCchhhHhhhhHHHH
Q 002921 553 FELNQPVYLDILMPPLI 569 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~ 569 (865)
+.+. ||+.+++|.+-
T Consensus 116 ~aLv--PyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALV--PYYRQLLPVLN 130 (183)
T ss_pred HHHH--HHHHHHHHHHH
Confidence 8887 89999998654
No 162
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.14 E-value=0.0055 Score=55.48 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=78.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-chhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH---h
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARV-CPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV---K 738 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~---~ 738 (865)
.++|+++..+.+.+..-+-.|...+.+++.. .++.+.|.+++++..+.+.|+.. +.++..+++.+|-.++. .
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr----~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR----DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHhhhh
Confidence 5889999999988888888899999999999 67889999999999999999998 78999999999999944 4
Q ss_pred ccccccchHHHHHHHHH
Q 002921 739 ARQEISPIVMTVVLCLV 755 (865)
Q Consensus 739 ~~~~~~~~~~~il~~l~ 755 (865)
.|+.+.||+.++++.+.
T Consensus 114 vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56778899988888666
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.014 Score=63.03 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=128.7
Q ss_pred CCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 002921 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQ-QLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (865)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~-~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w 83 (865)
|..+..++.++.+.+.-..+++ +.- .|--|.. .|-.+..+.++-.+.-+++. +.++-.|..+...+ .+...-
T Consensus 477 mlGt~~~eaiedm~~Ya~ETQH-eki-~RGl~vGiaL~~ygrqe~Ad~lI~el~~---dkdpilR~~Gm~t~--alAy~G 549 (929)
T KOG2062|consen 477 MLGTANQEAIEDMLTYAQETQH-EKI-IRGLAVGIALVVYGRQEDADPLIKELLR---DKDPILRYGGMYTL--ALAYVG 549 (929)
T ss_pred hhCcCcHHHHHHHHHHhhhhhH-HHH-HHHHHHhHHHHHhhhhhhhHHHHHHHhc---CCchhhhhhhHHHH--HHHHhc
Confidence 4444555544444443333221 111 2332222 34455566677676666665 45888887765443 222211
Q ss_pred CcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhcc-CChhHHhHHHHHHHHHHhhc
Q 002921 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDI 162 (865)
Q Consensus 84 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~L~~l~~~~ 162 (865)
...-..||..|--+.+|.+..||+.+..+++-+.-.+ |+..|...+.+.. -++.+|.++..+|+-.|..-
T Consensus 550 ----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 550 ----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 1122345555555788999999999999999888776 5556666666654 48999999999999888765
Q ss_pred hhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHH
Q 002921 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (865)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (865)
+. ..-+..+-....|+..-||+.|+-++.-++-...+...+....+...+.+.+.+..++.
T Consensus 621 G~--------------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 621 GL--------------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred Cc--------------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 53 34455566666788888999999999888765555566666666666666666654443
No 164
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.12 E-value=0.023 Score=51.99 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc-
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ- 741 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~- 741 (865)
+..-+...+++++..-|-.++.+++..+..++ +.+..+....+..+.+.++..+ ...+++.++.++..+.....+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~---~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD---PPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhcCC
Confidence 55666677788889999999999999999985 5565666777777777777654 678899999999999877642
Q ss_pred ------cccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHH
Q 002921 742 ------EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIA 801 (865)
Q Consensus 742 ------~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 801 (865)
...|.+..+++.+++++.+ ....+.++.++..++..+|..+.||..++-......
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 2468899999999988765 236678889999999999999999987766555443
No 165
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.11 E-value=0.0061 Score=55.83 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHhc-hhhhhhccHHHHHHHH------------HhccCCCChHHHHHHHHHHHhhHHHHhhhhC----
Q 002921 407 KDREAAVLALGAIAEG-CIKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---- 469 (865)
Q Consensus 407 ~~r~~a~~~l~~l~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 469 (865)
++|.+|+.+|+.+++. -++.+..|.+.++|.. ...+.||++++|.+|+.++..+.+..+..+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 4455566666666643 2335799999999999999988876554321
Q ss_pred CC-----------cchhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhc-cch-hhhHHHHHHHHHHHhcccchh
Q 002921 470 HQ-----------NGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAA-EEL-APRLEIILQHLMMAFGKYQRR 535 (865)
Q Consensus 470 ~~-----------~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~al~~l~~~~~-~~~-~~~~~~i~~~l~~~l~~~~~~ 535 (865)
.. .....+.++-..++..++.+ +..+....+.++..++.+.+ ..+ ..+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 00 02233455555666666654 67788889999999888753 222 457788888888888887777
Q ss_pred hHHHHHHHHHHHHHHh
Q 002921 536 NLRIVYDAIGTLADAV 551 (865)
Q Consensus 536 ~~~~~~~~l~~l~~~~ 551 (865)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8878888888776543
No 166
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=2.4 Score=55.43 Aligned_cols=293 Identities=13% Similarity=0.072 Sum_probs=171.6
Q ss_pred hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh--------hhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhh
Q 002921 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--------GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (865)
Q Consensus 389 ~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~--------~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (865)
.+++.+.+.+...+ ...+.++..++..+.+.... ...|.+..+++.+.+...++..+-|...+..++.+
T Consensus 984 i~ldal~~~l~~~~---~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN---SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCL 1060 (3550)
T ss_pred HHHHHHHHHHhccc---hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeee
Confidence 45677777777777 88899999999887665432 22477788888899999999999999888888888
Q ss_pred HHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHH----HHHHHHHHHHHHhc-----cch-hhhHHHHHHHHHHHhc
Q 002921 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE----AACSAFATLEEEAA-----EEL-APRLEIILQHLMMAFG 530 (865)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~----~a~~al~~l~~~~~-----~~~-~~~~~~i~~~l~~~l~ 530 (865)
.+.++.. ...++...++..++..+.|...++.. .+-..+..+...+. +.. ......++..+..-+.
T Consensus 1061 ~~~~~~~----~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1061 IESMPSL----WLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred hhhchHH----HHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 8776532 24556667778887777764333222 33334444443321 111 1234556666667777
Q ss_pred ccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCC--cch--hhHHHHHH--HHHHHhccccccch
Q 002921 531 KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD--KDL--FPLLECFT--SIAQALGAGFTQFA 604 (865)
Q Consensus 531 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~--~~~~~~l~--~l~~~~~~~~~~~~ 604 (865)
+++..+++.+..++..+.+..|.... .++-++.+.+...--.. +.. ...+..+. ..+...|+.+-.+.
T Consensus 1137 npN~~VR~~~~~~L~~i~~~s~~~v~------~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~ 1210 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSVV------KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFT 1210 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCcHH------HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCch
Confidence 77888999999999999988865543 34444555542211011 111 11222222 12334566555565
Q ss_pred HHHHHHHHH--HHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHH
Q 002921 605 QPVFQRCIN--IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQS 682 (865)
Q Consensus 605 ~~i~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~ 682 (865)
..++..... .|... + +.+. .+ +.+. ...-........|..
T Consensus 1211 ~~l~~l~~~~~~La~~------------~-~~~~-------~~-i~k~-----------------~~~k~~~~l~~Lr~~ 1252 (3550)
T KOG0889|consen 1211 EELYRLKRFLIALADA------------E-EDEL-------AT-IQKT-----------------SDYKNSSSLVRLRVA 1252 (3550)
T ss_pred HHHHHHHHHHHHhhhh------------h-hhhh-------hh-hhcc-----------------cccccccccccchhH
Confidence 554442211 11100 0 0000 00 1100 000000112345788
Q ss_pred HHHHHHHHHhhch---hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 002921 683 AFALLGDLARVCP---VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (865)
Q Consensus 683 a~~~l~~l~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~ 736 (865)
+..++++...... ....++.++++..+++.+..+ ..++...+..++-...
T Consensus 1253 ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~----~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1253 CIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR----SSELIEVALEGLRKVL 1305 (3550)
T ss_pred HHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC----hHHHHHHHHHHHHhhh
Confidence 8888888887754 345688889999999998887 6677777766665544
No 167
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.90 E-value=1 Score=49.89 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc----CCCc---HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHh
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~ 89 (865)
+..+|..+.||+.. +|++..+-|+++.+ +|+. +..|++...+ ++.+.-+|.++.++++..+.+ ++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~-~~~s~~vrnfsliyi~~g~~R----l~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKE-PSDSSFVRNFSLIYIEMGFDR----LDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhC-CCCchHHHHHHHHHHHHhhhc----CCHH
Confidence 44577777899988 99999999998643 4665 4567777764 245789999999988766554 8999
Q ss_pred HHHHHHHHHhhhhhC
Q 002921 90 NQQYIKSELLPCLGA 104 (865)
Q Consensus 90 ~~~~i~~~ll~~l~~ 104 (865)
.+..+...+++++..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999874
No 168
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.88 E-value=0.014 Score=52.84 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=93.5
Q ss_pred hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhc--cCCCChHHHHHHHHHHHhhHHHH
Q 002921 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL--LDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 387 ~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
.|.+++.+.+.++.+.+ |..|..++.++|.+.. +.|+..+.+..-... -.+.+.......... ...
T Consensus 8 yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~ 75 (160)
T PF11865_consen 8 YPELLDILLNILKTEQS--QSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISLPM-----MGI 75 (160)
T ss_pred hHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHHhh-----ccC
Confidence 57788888888876543 9999999999999874 223322211110000 011112222222111 111
Q ss_pred hhhhCCCcchhhHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHH
Q 002921 465 VQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (865)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (865)
. +...+-|..-++..++..++|+. ..-+..+..++..+++..+....||++++++.++..+.+.....++..+.-
T Consensus 76 ~----~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~q 151 (160)
T PF11865_consen 76 S----PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQ 151 (160)
T ss_pred C----CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence 0 01123344567888899999874 444567888999899888888899999999999999997777666677776
Q ss_pred HHHHHHH
Q 002921 544 IGTLADA 550 (865)
Q Consensus 544 l~~l~~~ 550 (865)
++.++..
T Consensus 152 L~~lv~i 158 (160)
T PF11865_consen 152 LADLVSI 158 (160)
T ss_pred HHHHHHH
Confidence 7666543
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.011 Score=57.40 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=105.3
Q ss_pred ccccHHHHHHHHHHHHHhhhCcchhhhhHHHH---HHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHH
Q 002921 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMPVI---QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l---~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (865)
.+|.....+...+.+++..-++.+-+.+...+ .+.+++.. ..+-.+|+++++.+.+...+.+...++..+..++
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR---S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll 176 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR---SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLL 176 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45877888888888888877765544444444 44455555 6788999999999999888877778888888888
Q ss_pred hccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 002921 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (865)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (865)
..-.+.+..||..|-.+|..+..+..+ ..+++.++.+++..++++|..++.++.+....++
T Consensus 177 ~ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 177 HKASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hhhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 888888999999999999988887654 2567777778888899999999988887766553
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.83 E-value=0.73 Score=47.36 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=122.5
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-----------CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhc--
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI-- 162 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-----------~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~-- 162 (865)
..|+..|..-+-..|+.++++.+.+.+.... ..||+++..|..+..+++...- +-.+|+..++.-
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l 156 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHH
Confidence 3445555556667777777777777776421 3568888888888887664332 222344444321
Q ss_pred hhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc----HHhHHhHHHHHHHHHHhhCCCCHHHH
Q 002921 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVR 238 (865)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~r 238 (865)
...+-. +..+-.+++..+.++-+|-..|+.++..+....+ +.+..+++.+....-.++.+++.-+|
T Consensus 157 ~~~iL~----------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 157 AKIILY----------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHHT----------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhC----------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 111111 2233346778888999999999999999875533 34556677788877778888889999
Q ss_pred HHHHHHHHHHHhhc--hhhhhhhHH--HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 002921 239 KLVCAAFNLLIEVR--PSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (865)
Q Consensus 239 ~~~~~~l~~l~~~~--~~~~~~~l~--~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~ 295 (865)
+++++.|+.+.... ...+..|+. .-+..++..+.+....++..|+.++.-++..+..
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999988643 344556664 5666777889999999999999999888776433
No 171
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=1.5 Score=53.75 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=98.4
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhccc
Q 002921 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEE 513 (865)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~al~~l~~~~~~~ 513 (865)
...+...+..++|..|-++..++++++...+ ...+...+.+..+..+.+. ++..|..-..+++.+-+..+..
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~-------~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVG-------SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 4456677888999999999999999998764 4677788888888888874 5666777788888887765432
Q ss_pred h-hhhHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCC
Q 002921 514 L-APRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (865)
Q Consensus 514 ~-~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 576 (865)
. ..++..-+..++..-++... .+++..+.++..++...|+-+. .|....+..+...+-+..
T Consensus 951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~--~~ve~tlsl~~~lLls~p 1013 (2067)
T KOG1822|consen 951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR--VLVEPTLSLCLKLLLSVP 1013 (2067)
T ss_pred CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh--hhHHHHHHHHHHHcCCCC
Confidence 2 34555555566666666666 5677888889888888888775 677777777777666543
No 172
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.83 E-value=0.88 Score=48.20 Aligned_cols=317 Identities=16% Similarity=0.116 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHhhhC---c-ch----hhhhHHHHHHhhcc----CCCcchhHHHHHHHHHHHHHhchh--hhhhc-cHH
Q 002921 368 RKCSAAALDVLSNVFG---D-EI----LPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCI--KGLYP-HLS 432 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~---~-~~----~~~~~~~l~~~l~~----~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~l~ 432 (865)
|.-|+..|....+... + .. ++.+...+..-+.+ .++..-+.-..|+.+++.+..... ..+.. ...
T Consensus 10 r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~ 89 (372)
T PF12231_consen 10 RLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFAS 89 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHH
Confidence 6667766666555542 1 11 33344444443333 111125677788888887764332 22222 222
Q ss_pred HHHHHHHhccCCCC--hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Q 002921 433 EIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEE 508 (865)
Q Consensus 433 ~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d--~~~~vr~~a~~al~~l~~ 508 (865)
.++...+..+.+++ ..+...++|+++. ..++.. .........+-..+..+.+ ++..+-.....++..++.
T Consensus 90 ~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 90 FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPK----IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCc----ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 36666777776654 3566677777763 222211 1122222333333444454 356777788888999998
Q ss_pred HhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHH
Q 002921 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (865)
Q Consensus 509 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (865)
..+..+..+...=++.++..+-+...+.+..+......+...+|++. . +...+.+.++....
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~----~---~s~~~~~~~~~~~~----------- 225 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK----E---LSKSVLEDLQRSLE----------- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH----H---HHHHHHHHhccccc-----------
Confidence 87766655544444444444333334444445544444444555431 1 11122222221110
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh---hhhcccchHH
Q 002921 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI---ESLVAQSNLR 665 (865)
Q Consensus 589 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~---~~~~~~~~l~ 665 (865)
++ .+.+.+.+.+.+++... .+ -..+.+.|+.++.-+|... .+++. .++
T Consensus 226 ---------~~--~~~~~~~~~L~~mi~~~---------------~~-~~~a~~iW~~~i~LL~~~~~~~w~~~n--~wL 276 (372)
T PF12231_consen 226 ---------NG--KLIQLYCERLKEMIKSK---------------DE-YKLAMQIWSVVILLLGSSRLDSWEHLN--EWL 276 (372)
T ss_pred ---------cc--cHHHHHHHHHHHHHhCc---------------CC-cchHHHHHHHHHHHhCCchhhccHhHh--HHH
Confidence 11 22333333333333320 01 1125667777777776542 23444 499
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhchh---hhHhhHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHHHHHHH
Q 002921 666 DMLLQCCMDDASDVRQSAFALLGDLARVCPV---HLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIGELAV 737 (865)
Q Consensus 666 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~~a~~~l~~l~~ 737 (865)
.+.-.|+++.++.+|..|+.++..++..... .....+.-++..+...++...... ..+++..++..++.+.-
T Consensus 277 ~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 9999999999999999999999999885432 223445556666666666553211 22677777777777663
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.78 E-value=0.2 Score=51.30 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=92.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc-c
Q 002921 666 DMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-S 744 (865)
Q Consensus 666 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~ 744 (865)
.++..++++.+..+|..|+.|+|-++....+.-..++.-++.. ++.. +..++..|+.++.+++...|..+ .
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~----~~~~----~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQA----LQKD----DEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH----HHhC----CHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3445677888999999999999999988765445555544444 4333 56899999999999998877432 2
Q ss_pred c--------hHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcc-cccHHHHHHHHHHHhccCCChHHHHHHH
Q 002921 745 P--------IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV-SPHMEHFMQPWCIALSMIRDDTEKEDAF 815 (865)
Q Consensus 745 ~--------~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 815 (865)
. ....+++.+...+.+. .+.++..++..+++|...+.-.- ...+..++-.|++. ...+...-+.++
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p--~t~~~~~LrQ~L 176 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP--STEDNQRLRQCL 176 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc--ccCCcHHHHHHH
Confidence 2 2346777777777766 35688888889999886543222 22334444444432 222333444444
Q ss_pred HHHHHHHhh
Q 002921 816 RGLCAMVKA 824 (865)
Q Consensus 816 ~~l~~l~~~ 824 (865)
..++..+..
T Consensus 177 ~~Ffp~y~~ 185 (298)
T PF12719_consen 177 SVFFPVYAS 185 (298)
T ss_pred HHHHHHHHc
Confidence 444444443
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.69 E-value=0.0038 Score=38.36 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 694 (865)
++|.+..+++|++++||.+|+.+++.+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788999999999999999999999998763
No 175
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.67 E-value=0.64 Score=49.24 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHHHhhch--hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 664 LRDMLLQCCM-DDASDVRQSAFALLGDLARVCP--VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 664 l~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
++..|...+. +.++.+..-|+.=+|+++++++ ..+..-+. .=..+.+.+.++ +.+||.+|..|+..+..
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~----d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE----DPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC----CHHHHHHHHHHHHHHHH
Confidence 5566666663 3566666777788999999985 33332221 222344455666 78999999999998764
No 176
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.32 Score=52.99 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=107.4
Q ss_pred CcHH-HHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc
Q 002921 48 DFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (865)
Q Consensus 48 ~~~~-~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~ 126 (865)
+++. .+-++|....+.+-.+|+-...+|...+. .-..+++.....+.+.++..+.+..+.||.++..++..+-.....
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 4554 45556665567788999999988866555 445689999999999999999999999999998888877643322
Q ss_pred CChHHHHHHHHHhh-ccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 002921 127 AGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (865)
Q Consensus 127 ~~w~~ll~~l~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~ 205 (865)
+.. ++...+...+ +++++.+|.+++..+.. -+...|.++.-..|.+..+|+.+..-+.
T Consensus 160 ee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v--------------------dnsTlp~IveRarDV~~anRrlvY~r~l 218 (892)
T KOG2025|consen 160 EEC-PVVNLLKDLIQNDPSDEVRRAALSNISV--------------------DNSTLPCIVERARDVSGANRRLVYERCL 218 (892)
T ss_pred Ccc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc--------------------CcccchhHHHHhhhhhHHHHHHHHHHhh
Confidence 222 3333444444 35688999999876621 1344666666667766666766543332
Q ss_pred HHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002921 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (865)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 245 (865)
.-+... .-.+...+..+-..+.|.+..++.++...+
T Consensus 219 pkid~r----~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 219 PKIDLR----SLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hhhhhh----hhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 222211 111222233344455565666666555544
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.12 Score=58.67 Aligned_cols=225 Identities=17% Similarity=0.181 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc-CCchh-hHHhhhhhHHHHHHhh
Q 002921 237 VRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLPHE-NLKEFLPRLVPVLLSN 313 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~-~~~~~-~~~~~~~~l~~~ll~~ 313 (865)
-|-.|+..|..+....+-.+.--+. .|+|+++..+++.-.+.|..-.=.|..+... +.+.. +++.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe------------ 553 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKE------------ 553 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhc------------
Confidence 3455777777777655443332232 6888888888888777766544456655433 22211 1110
Q ss_pred ccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC--c-c-hhhh
Q 002921 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D-E-ILPT 389 (865)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~--~-~-~~~~ 389 (865)
.|..|+.....- ++... -.-|..|+-.|..+...++ . . +-..
T Consensus 554 --------------------~g~~YF~~vL~~-----~~~~~---------~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 554 --------------------NGYKYFLQVLDP-----SQAIP---------PEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred --------------------cCceeEEEEecC-----cCCCC---------HHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 011111100000 00010 0258889999999998883 3 2 3356
Q ss_pred hHHHHHHhhccC-CCcchhHHHHHHHHHHHHHhchhhh-hhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002921 390 LMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 390 ~~~~l~~~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
++.++...++++ + |..|.=.+.+||.+=+.+.+. ....-......++..+.|+.|.||.+|..+||.|.......
T Consensus 600 li~iCle~lnd~~~---pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~ 676 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPE---PLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN 676 (1387)
T ss_pred HHHHHHHHhcCCcc---HHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccc
Confidence 778888888884 6 999999999999998877642 11222334556778899999999999999999988753110
Q ss_pred hCC---------------CcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 002921 468 IGH---------------QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 468 ~~~---------------~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (865)
..+ ...+.+.......++..++|..+-||.....++..+....
T Consensus 677 fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 677 FDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred cchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 000 0012222333346777888989999999888888776543
No 178
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.58 E-value=0.023 Score=52.10 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHh-cC---cCChHHHHHHH------------HHhhccCChhHHhHHHHHHHHHHhhchhhccc--C
Q 002921 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLDS--D 169 (865)
Q Consensus 108 ~vr~~~a~~l~~i~~~-~~---~~~w~~ll~~l------------~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~--~ 169 (865)
.+|..+..++..+++. ++ .++|+.++|.- .-.+.|+++.+|.+|+.++..+.++....+.. +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 43 47999998764 33456788999999999999999987554311 1
Q ss_pred C---CCCCC-------cchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhccccHH-h-HHhHHHHHHHHHHhhCCCCHH
Q 002921 170 V---PGLAE-------CPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAE 236 (865)
Q Consensus 170 ~---~~~~~-------~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~ 236 (865)
. ..-|. ..+.++-..+...++.+ +..+....++|+..++...|=. + ...+..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11121 11233333455555554 6778889999999999876521 1 133455566666667778889
Q ss_pred HHHHHHHHHHHHHhhch
Q 002921 237 VRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~ 253 (865)
++..++.+++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.57 E-value=1.3 Score=46.92 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=113.6
Q ss_pred CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhh---CcCCHhH--HHHHHHHHhhhhhCCChhHHHHHHHHHHHHH
Q 002921 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY---KSMSPSN--QQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (865)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w---~~~~~~~--~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~ 121 (865)
|.+...++.++.. ...+++.+....++-..+...- ..+-... ....-..++..|..++..+...++.+++.++
T Consensus 52 ~~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 5677788888864 6678888888888877775421 1111000 0112234555777788899999999999998
Q ss_pred HhcCcC----ChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchh--hcccCCCCCCCcchhhhHHHHHHHhcCC--
Q 002921 122 QLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFFQSP-- 192 (865)
Q Consensus 122 ~~~~~~----~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~-- 192 (865)
...+.. .-+.++..+...+.++ +...+..|+.+|..+.+.-.. .+-. ...++.+.+.|+..
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------~~~v~~L~~~L~~~~~ 199 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------ADGVPTLVKLLSNATL 199 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH----------ccCHHHHHHHHhhccc
Confidence 764322 2233445566666554 456777888899888764332 2211 11355566666542
Q ss_pred CHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhh
Q 002921 193 HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~ 251 (865)
+.++.-.++-|+..+.-.-+ ....+ ..+++.+...+.. ..+++-+-++.+|..++..
T Consensus 200 ~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 200 GFQLQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred cHHHHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 55777788877776653321 11222 2456666666553 2455666677777777764
No 180
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.23 Score=49.88 Aligned_cols=141 Identities=16% Similarity=0.044 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGL 484 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l 484 (865)
...|+.|+.-|..+++.......=+=..-+..++..++++++.+|+.|+|++|.....-+.. ....+ ...++.|
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS-----QEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-----HHHHHHcccHHHH
Confidence 88999999999999987764321110112333555899999999999999999988865532 22221 2356777
Q ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHhccchhhhHH-HHHHHHHHHhccc--chhhHHHHHHHHHHHHHHh
Q 002921 485 LKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKY--QRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 485 ~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~ 551 (865)
+..+. +.+..+|..|..|++.++++.......++. .=+..|.+++++. +...++.++..++.+....
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 77776 456789999999999999986443333322 1256677777774 3344556777777777643
No 181
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.5 Score=51.57 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=81.4
Q ss_pred CHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc---CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
..+..+++...++.+..+++..||...+++++.+.... ..+.+..+...+...+.+..|.+|..|+.+|+.+=..-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 34556677777777778899999999999999988732 345667788888888999999999999999987754211
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHhcc
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIML 210 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~~l~~~~~~ 210 (865)
+ .+ ..+...+...+ +|++++||++|+.++..--..
T Consensus 159 d---ee---------~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsT 194 (892)
T KOG2025|consen 159 D---EE---------CPVVNLLKDLIQNDPSDEVRRAALSNISVDNST 194 (892)
T ss_pred C---Cc---------ccHHHHHHHHHhcCCcHHHHHHHHHhhccCccc
Confidence 1 11 23444445555 468999999998887554333
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.46 E-value=0.44 Score=48.82 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=87.7
Q ss_pred HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCC
Q 002921 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (865)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (865)
.+...+++++.++++.+|..+-.++|..+-.+. ..-.+.++.+.+.++.++..++..|++++..+.-.++...-.....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 344445579999999999999999999988763 3445677888888877788999999999999988777543221100
Q ss_pred -CCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 173 -LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 173 -~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
........+...+.+.+.+.++++|..|++.+..+.-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0012346788889999999999999999999999864
No 183
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=3.5 Score=49.74 Aligned_cols=129 Identities=14% Similarity=-0.001 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHH
Q 002921 721 TVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 799 (865)
Q Consensus 721 ~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 799 (865)
++.+|.+++..+...+-.-. ....+..+.|-..+...+.+.+ ..+++.+..+++-++...-.... +.......
T Consensus 1540 tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~---i~vre~Aa~~Lsgl~~~s~~~~~---~~k~d~~~ 1613 (1710)
T KOG1851|consen 1540 TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ---IEVREEAAKCLSGLLQGSKFQFV---SDKRDTTS 1613 (1710)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH---HHHHHHHHHHHHHHHhccccccc---hHhhhhhh
Confidence 78898887777766553321 1233456677777788887763 45999999999888865433222 22233333
Q ss_pred HHhccC-CChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc-HHHHHHH
Q 002921 800 IALSMI-RDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT-LHLILLS 855 (865)
Q Consensus 800 ~~l~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~ 855 (865)
...... ++....-.++.++..++-.-|..+...++..+..+.++...++ .+++..+
T Consensus 1614 ~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~~~i~~tvkk 1671 (1710)
T KOG1851|consen 1614 NILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARESAAIKQTVKK 1671 (1710)
T ss_pred hhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCchHHHHHHHH
Confidence 333332 3444566899999999999999999999999999999999886 5544443
No 184
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.36 E-value=0.41 Score=50.75 Aligned_cols=179 Identities=18% Similarity=0.297 Sum_probs=105.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcC----CCCHHHHHHHHHHHHHhhccCCch
Q 002921 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEAQLPH 296 (865)
Q Consensus 221 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~v~~~a~~~l~~l~~~~~~~ 296 (865)
.+...+.+.+.+.++..|..|++.|.. ..-+...++.++.++-.... ..+-+.-...+....++...+ .
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np--~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET-----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP--N 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC--c
Confidence 344444454445678888888877752 11122333333333333222 123344445566666665553 2
Q ss_pred hhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 002921 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (865)
Q Consensus 297 ~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~ 376 (865)
=.+.||+.+++|.++.++....-. .+| + .++.|.+|..|+.++.
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~------------------~~p---------------~---~dnhwaLRDfAA~ll~ 323 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLC------------------LRP---------------E---LDNHWALRDFAARLLA 323 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhcc------------------CCc---------------c---ccchHHHHHHHHHHHH
Confidence 357899999999998876642210 000 0 1257999999999999
Q ss_pred HHHhhhCcc---hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhh-hhccHHHHHHHHHhccC
Q 002921 377 VLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD 443 (865)
Q Consensus 377 ~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~ 443 (865)
.++..+++. ..+-+...+...+.+.. ..|...++++..|..+.....+. +.+.++.....+.+.+.
T Consensus 324 ~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 324 QICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 999999863 33455566666665531 12999999999999887644332 23555555444444443
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=0.33 Score=55.26 Aligned_cols=193 Identities=18% Similarity=0.158 Sum_probs=135.5
Q ss_pred CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH-hhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc
Q 002921 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR-TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~-~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (865)
-|+-+++.++.|-+ +..|.=|.++|.+.+- ..|- ++-..--.|..-++++|.++...+|-.+.-+.++|...+
T Consensus 470 PPeQLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWA-VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred ChHhcchHHHHHHH-----HHHHHHHHHHHHHHhccchhh-hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 57788888888864 5788889999988874 4564 233333466777899999999999999999999998887
Q ss_pred CcCChHHHHHH-----HHHhhcc-C--ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC-CHH
Q 002921 125 GIAGWLELLQA-----LVTCLDS-N--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTS 195 (865)
Q Consensus 125 ~~~~w~~ll~~-----l~~~l~~-~--~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~ 195 (865)
+.-+ -+|+.. ..+.+.+ + ++++|-.+.-+|+.++..+.--... -.-..++...+..++++ .+-
T Consensus 544 ~SCQ-~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-------cl~~~li~iCle~lnd~~~pL 615 (1387)
T KOG1517|consen 544 PSCQ-ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA-------CLNGNLIGICLEHLNDDPEPL 615 (1387)
T ss_pred chhH-HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH-------hccccHHHHHHHHhcCCccHH
Confidence 4333 233322 2222333 2 4588988999999999986542211 11256778888899985 688
Q ss_pred HHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc
Q 002921 196 LRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (865)
Q Consensus 196 vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 252 (865)
.|.=++-||+.+-+..+..-+.-. ..--+.+...+.|+.+++|.+++-+|..++...
T Consensus 616 LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 899999999998765433211111 112345666678899999999999999998864
No 186
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.21 E-value=0.089 Score=57.31 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=122.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002921 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (865)
Q Consensus 221 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (865)
.+++.+.++....+..+|...+.-+..+++...+. .+-.++++.+...+.|.++-+|...+.++..++..= ..+.+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL-~~~~Ln 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL-SKRNLN 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh-chhhhc
Confidence 35777777778888888887777777666655442 244688999999999999999999999888776541 111000
Q ss_pred hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 002921 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (865)
Q Consensus 301 ~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (865)
..++ +++.....| + +-.+|.....|++.++.
T Consensus 407 ---~Ell----r~~ar~q~d------------------------------------~------~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 407 ---GELL----RYLARLQPD------------------------------------E------HGGIRTNTTICLGKIAP 437 (690)
T ss_pred ---HHHH----HHHHhhCcc------------------------------------c------cCcccccceeeeccccc
Confidence 1111 112211101 0 01256666777777776
Q ss_pred hhCcchhhhhH-HHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHh
Q 002921 381 VFGDEILPTLM-PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (865)
Q Consensus 381 ~~~~~~~~~~~-~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (865)
.........++ ..+...+.++- ...|.++..++....+.+. ....-.+|+|.+....-|++..||..|..++..
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf---~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPF---VPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccchhhhccccchhhhhhhcCCC---CCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 65332232222 23333566666 7889999999988776554 234456688888899999999999999988877
Q ss_pred hHHHHh
Q 002921 460 FSKFIV 465 (865)
Q Consensus 460 l~~~~~ 465 (865)
+-....
T Consensus 513 fl~kl~ 518 (690)
T KOG1243|consen 513 FLEKLE 518 (690)
T ss_pred HHhhhh
Confidence 766554
No 187
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.20 E-value=0.089 Score=57.32 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=157.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 002921 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (865)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (865)
+..++-.+.+-|..=..-|...++..|+++..+. +++.++..+.-.+ -....+..+..+...... .+|-..+++
T Consensus 260 Leel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~k--vlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~--~eyq~~i~p 333 (690)
T KOG1243|consen 260 LEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASK--VLPILLAALEFGD--AASDFLTPLFKLGKDLDE--EEYQVRIIP 333 (690)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHhhccc--cchhhhhHHHHhhhhccc--cccccchhh
Confidence 3344445555566555555555555555544322 3444444332211 011122222222222111 135667888
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccccc
Q 002921 266 YMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (865)
Q Consensus 266 ~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 345 (865)
++++.+...|..+|..-++-+..+++.- ..+ .+-++++|.+...+.++++
T Consensus 334 ~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~---~~~d~I~phv~~G~~DTn~-------------------------- 383 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQ---ILNDQIFPHVALGFLDTNA-------------------------- 383 (690)
T ss_pred hHHHHhcCcchHHHHHHHHhHHHHhhhc-CHH---hhcchhHHHHHhhcccCCH--------------------------
Confidence 9999999999999988888777766651 111 1234566666555443321
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchh-hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh
Q 002921 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (865)
Q Consensus 346 ~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 424 (865)
.+|.....++..++..++...+ ..++..+...-.+++ ...|--...|+|.++....
T Consensus 384 --------------------~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlgki~~~l~ 440 (690)
T KOG1243|consen 384 --------------------TLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLGKIAPHLA 440 (690)
T ss_pred --------------------HHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeecccccccc
Confidence 4788888888888888877643 455555555444555 6777777788888877654
Q ss_pred hhhhccHHHH-HHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002921 425 KGLYPHLSEI-VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (865)
Q Consensus 425 ~~~~~~l~~i-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al 503 (865)
.... ..+ .......++||-+.-|.++.+.+..-.+.+. ....-.++++.+.....|++..||..|..++
T Consensus 441 ~~~R---~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 441 ASVR---KRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred hhhh---ccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhhHHHHHH
Confidence 3321 112 2234446899999999999988877666553 3455667888888888899999999999998
Q ss_pred HHHHHHh
Q 002921 504 ATLEEEA 510 (865)
Q Consensus 504 ~~l~~~~ 510 (865)
..+....
T Consensus 511 ~~fl~kl 517 (690)
T KOG1243|consen 511 RQFLEKL 517 (690)
T ss_pred HHHHhhh
Confidence 8777644
No 188
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.19 E-value=0.33 Score=53.89 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchH-------HHHHHHHHHHhcCchhhhhhHHHHHH
Q 002921 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIV-------MTVVLCLVPILKHSEELNKSLIENSA 773 (865)
Q Consensus 701 ~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-------~~il~~l~~~l~~~~~~~~~~~~~~~ 773 (865)
|-+.++......+..+. +..+.++++.+|-.+.-.... ...|+ +..++.+..++... +..+...++
T Consensus 515 w~p~vVr~Yl~Ll~~s~---n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~---~~~vv~s~a 587 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSK---NDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRND---DSDVVRSAA 587 (717)
T ss_pred ecHHHHHHHHHHHHHhc---chHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcC---CchHHHHHH
Confidence 44556666555555433 567778888888776543321 11222 22456677777776 367889999
Q ss_pred HHHHhhhhh--CCCcccccHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHHhhCchhhH-----hhHHHHHHHhh
Q 002921 774 ITLGRLAWV--CPELVSPHMEHFMQPWCIALSMIRD-----DTEKEDAFRGLCAMVKANPSGAL-----SSLVFMCRAIA 841 (865)
Q Consensus 774 ~~l~~l~~~--~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~-----~~l~~~~~~~~ 841 (865)
.++..|... +.+.+. ...++.++..|+.... .+.-..+...+.+++..++.... ..++-++-+-.
T Consensus 588 ~~LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISK 664 (717)
T ss_pred HHHhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhc
Confidence 999988862 223333 3457888888887544 45566778888888877665332 33444444444
Q ss_pred c
Q 002921 842 S 842 (865)
Q Consensus 842 ~ 842 (865)
+
T Consensus 665 s 665 (717)
T KOG1048|consen 665 S 665 (717)
T ss_pred c
Confidence 4
No 189
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.17 E-value=2.3 Score=45.48 Aligned_cols=170 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
...-|+.++........+.+...+-.++..++.+-.++...-| .+..+..++. +.+.++-.| ...+..++..+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~---Y~~~~dpeg--~~~V~~~~~h~ 96 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFE---YDMPDDPEG--EELVAGTFYHL 96 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHH---hcCCCChhh--hHHHHHHHHHH
Confidence 3445666665555444443333334555555555444432222 2333433333 222221111 24567778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 002921 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (865)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (865)
+++..+++..||..+++.+..++....+.=......++..+...+-|.++.+|..|..+|..+-+..... ......++.
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHH
Confidence 8888999999999999999988766432111222334555555556778899999999998887643321 112222222
Q ss_pred HHhhhcCCCCHHHHHHHHHH
Q 002921 266 YMLQVNKDTDDDVALEACEF 285 (865)
Q Consensus 266 ~l~~~~~~~~~~v~~~a~~~ 285 (865)
.+ .-.|+..+||..|+.-
T Consensus 176 ~~--vqnDPS~EVRr~alln 193 (885)
T COG5218 176 DI--VQNDPSDEVRRLALLN 193 (885)
T ss_pred HH--HhcCcHHHHHHHHHHH
Confidence 22 1257788999988754
No 190
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.17 E-value=0.86 Score=48.87 Aligned_cols=263 Identities=14% Similarity=0.125 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHHHhchhh-hhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIK-GLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLM 482 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~-~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~ 482 (865)
|..-..++..|..+.+.... ....+++ +.+..++..+.+++++-|.....++-++...+.. ...++ ..+..
T Consensus 104 WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~------~r~~Ir~~i~~ 177 (409)
T PF01603_consen 104 WPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN------LRSFIRKSINN 177 (409)
T ss_dssp HHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT------THHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHH
Confidence 88888888888887765442 1233554 4788899999999999999999998887776653 23333 34444
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHHhcccCCchh
Q 002921 483 GLLKRILDT-NKRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPV 559 (865)
Q Consensus 483 ~l~~~l~d~-~~~vr~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ 559 (865)
.+.+.+.+. ...--......+++++......+.+ +..-+...++.+.+...... ......++..++.. +|.
T Consensus 178 ~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k------dp~ 251 (409)
T PF01603_consen 178 IFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK------DPS 251 (409)
T ss_dssp HHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-------GG
T ss_pred HHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh------Cch
Confidence 444444432 2233345566677777655444433 33333344444444433322 23445555555543 235
Q ss_pred hHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhH
Q 002921 560 YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV 638 (865)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 638 (865)
+...++..++..|-... ..++ .-.+.-+..+...+++ .|......++..+.+++.+ +...+.+
T Consensus 252 l~~~~i~~llk~WP~t~-s~Ke-v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S--------------~h~qVAE 315 (409)
T PF01603_consen 252 LAEPVIKGLLKHWPKTN-SQKE-VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS--------------PHFQVAE 315 (409)
T ss_dssp GHHHHHHHHHHHS-SS--HHHH-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS--------------SSHHHHH
T ss_pred hHHHHHHHHHHhCCCCC-chhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC--------------CCHHHHH
Confidence 66777778888886432 1111 1233444455554443 4444455555544444332 1446677
Q ss_pred hhhhhhhHH--HHHhhhhhhhhcccchHHHHHHHHhc-----CCChhHHHHHHHHHHHHHhhchhhhHhhH
Q 002921 639 CCLDLLSGL--AEGLGSGIESLVAQSNLRDMLLQCCM-----DDASDVRQSAFALLGDLARVCPVHLQARL 702 (865)
Q Consensus 639 ~al~~l~~l--~~~~~~~~~~~~~~~~l~~~l~~~l~-----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (865)
.|+..+.+= ...+...... ++|++...+. ..+..||..|..++.-+....+.-+....
T Consensus 316 rAl~~w~n~~~~~li~~~~~~------i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 316 RALYFWNNEYFLSLISQNSRV------ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHGGGGSHHHHHHHHCTHHH------HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHhChHH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 777777643 3333333332 5555554432 36888999999988888877665555433
No 191
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.17 E-value=2.7 Score=46.15 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCC-hhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHH
Q 002921 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (865)
Q Consensus 108 ~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (865)
.-|-.++.-++......+.+..+++-.....++..+. .+.|+.++..|..+++.-.... ...-..++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~------------~~~R~~fF 72 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS------------GLMRAEFF 72 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc------------HHHHHHHH
Confidence 4566777777777766655666666666666666653 4799999999999988654321 11112334
Q ss_pred HHhcC----CCHHHHHHHHHHHHHHhccc---cHHhHHhHHHHHHHHHHhhCC--------------------CCHHHHH
Q 002921 187 QFFQS----PHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSND--------------------PSAEVRK 239 (865)
Q Consensus 187 ~~l~~----~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~--------------------~~~~~r~ 239 (865)
+.+.+ ++-..|..|+.+|..=.+.+ ..++.+.+..++..+++.... .+...-.
T Consensus 73 ~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 73 RDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 44443 23456667777765544333 233445555566555522110 0122233
Q ss_pred HHHHHHHHHHhhchhhhh-hhHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCC
Q 002921 240 LVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (865)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~-~~l~~l~~~l~~~~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 317 (865)
..+..+..+++.....+. ..+..++..++..+. ...++.-..++.++-+++.....+ ...+..++..+.......
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc
Confidence 455555556654444333 455566666555543 233333467777777776652111 122333333332211110
Q ss_pred hhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh-hhCcchhhhhHHHHHH
Q 002921 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN-VFGDEILPTLMPVIQA 396 (865)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~~~~~l~~ 396 (865)
+....+-.++..|+. +.|...+..+..++.+
T Consensus 230 ------------------------------------------------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~ 261 (464)
T PF11864_consen 230 ------------------------------------------------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRS 261 (464)
T ss_pred ------------------------------------------------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcc
Confidence 123334556666653 3355555544444411
Q ss_pred hhccC-CCcchhHHHHHHHHHHHHHhchhhhhhc----cHHHHHHHHHhccCCCChHHHHHHHHHHHhhH
Q 002921 397 KLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYP----HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 397 ~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (865)
.++ ...+...-.+|+..++.+.-+.++.-.+ ....+++.+...++.+++.|-...+.++..+.
T Consensus 262 --~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 262 --PDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred --cCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 111 0122677789999999988776432211 12248888888898888888777777766666
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.14 E-value=0.21 Score=50.61 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=109.4
Q ss_pred hhHHHHHH-HHHHHHHh-chh-hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCC-CcchhhHHHHH
Q 002921 406 WKDREAAV-LALGAIAE-GCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVL 481 (865)
Q Consensus 406 ~~~r~~a~-~~l~~l~~-~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~ 481 (865)
|+...+.. ..+.-+.. ... ..+..+++-++|.++..+.|.++.+|..++.++..+.+.++..... -......+-+-
T Consensus 89 WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 89 WKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFE 168 (282)
T ss_pred cccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHH
Confidence 77665322 44444433 333 4567889999999999999999999999999999999876532000 00112244455
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHHHHHHh-c---cchhhhHHHHH-HHHHHHhcccc----hhhHHHHHHHH
Q 002921 482 MGLLKRIL--------DTNKRVQEAACSAFATLEEEA-A---EELAPRLEIIL-QHLMMAFGKYQ----RRNLRIVYDAI 544 (865)
Q Consensus 482 ~~l~~~l~--------d~~~~vr~~a~~al~~l~~~~-~---~~~~~~~~~i~-~~l~~~l~~~~----~~~~~~~~~~l 544 (865)
+++.+++. +.+..+-..+..++..++... . ..-...+..++ +.++..+.... .......++.+
T Consensus 169 ~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l 248 (282)
T PF10521_consen 169 DALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQL 248 (282)
T ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHH
Confidence 56666665 456777788888888887653 1 11122233333 32444443332 23445778888
Q ss_pred HHHHHHhcccCCchhhHhhhhHHHHHHHhcC
Q 002921 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (865)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 575 (865)
..++..+|.... .|+..+++.+.+.+.+.
T Consensus 249 ~~~i~~lGi~~~--~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 249 PPIIDELGISSV--KHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhccHHH--HHHHHHHHHHHHHhcCC
Confidence 999999998877 89999999998877654
No 193
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.16 Score=54.90 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=128.9
Q ss_pred hhhCcCCHhHHHHHHHHHhhhh-----hCCChhHHHHHHHHHHHHHHhc-CcCChHHHH-----HHHHHhhccCChhHHh
Q 002921 81 TAYKSMSPSNQQYIKSELLPCL-----GAADRHIRSTVGTIVSVVVQLG-GIAGWLELL-----QALVTCLDSNDINHME 149 (865)
Q Consensus 81 ~~w~~~~~~~~~~i~~~ll~~l-----~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll-----~~l~~~l~~~~~~~r~ 149 (865)
+.|+...-+..+.|-.-+++.+ .-+.+.+..+.-.+++..+... -.....+++ |.|...++-++..+|.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 4687766666666666555543 3344455555555666665442 233444443 5677778888999999
Q ss_pred HHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh----ccccHHhHHhHHHHHHH
Q 002921 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI----MLMPSALFVSMDQYLQG 225 (865)
Q Consensus 150 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~----~~~~~~~~~~~~~~l~~ 225 (865)
.|+..+-.+.--.++....+ ..+..++.-+..+..+|.|+-+.||..|..-+..+. +.+|+.+. -.++..
T Consensus 193 nAa~lf~~~fP~~dpd~~~e---~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~---~~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHAE---EMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL---IDLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCccHH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHH
Confidence 99888755544333322110 012334555667888999999999988876555544 33444332 122344
Q ss_pred HHHh-hCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 226 LFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 226 l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
++.- ..+...++|..++++|..++.+.-.. +.++.++|.+-..+.|+.+.||..+.+.+..+-..
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 4432 33556789999999999988754333 56777888777778899999999998888776443
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.10 E-value=0.033 Score=50.48 Aligned_cols=151 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred hhcccchHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHHH
Q 002921 657 SLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK-LKETVSVANNACWAIGE 734 (865)
Q Consensus 657 ~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~~~a~~~l~~ 734 (865)
||...|.+++.+...++. .++.+|.++++++|-+-.- .||..+.+.. ..+... ...+....+...
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-----DP~~~k~~~~---~~~~~~~~~~~~~~~~~~l----- 70 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILGAL-----DPYKHKSIQK---SLDSKSSENSNDESTDISL----- 70 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-----CcHHHhcccc---cCCccccccccccchhhHH-----
Confidence 455445689999888875 4699999999999987643 4554432111 111100 000011111111
Q ss_pred HHHhccccccc-hHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHH
Q 002921 735 LAVKARQEISP-IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKED 813 (865)
Q Consensus 735 l~~~~~~~~~~-~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 813 (865)
........... |....+..+..++.++. -.+....++.++-.+.......-.||++++++.+++.+....+ ..++.
T Consensus 71 ~~~~~~~~~ee~y~~vvi~~L~~iL~D~s--Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~ 147 (160)
T PF11865_consen 71 PMMGISPSSEEYYPTVVINALMRILRDPS--LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREF 147 (160)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHH
Confidence 11111112223 44456788888988874 1223334455554444433334478999999999999986554 77888
Q ss_pred HHHHHHHHHh
Q 002921 814 AFRGLCAMVK 823 (865)
Q Consensus 814 ~~~~l~~l~~ 823 (865)
.+.-|+.++.
T Consensus 148 ~~~qL~~lv~ 157 (160)
T PF11865_consen 148 YFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 195
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.05 E-value=2 Score=43.55 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
++.-|+-.+.+-..+...+....|.+++..|.+..+ +|. ... ... ... +.-..+...+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k------------~lq---~~~-~~~-~~I-----P~k~~v~krL 59 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLK------------ALQ---NSN-NQF-PYI-----PHKLQVSKRL 59 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH------------HHh---ccC-CCC-cee-----CcHHHHHHHH
Confidence 345666677777777777778899998877766431 111 000 000 000 1224556667
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhcccc-HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 002921 186 LQFFQSP-HTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (865)
Q Consensus 186 ~~~l~~~-~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l 263 (865)
.++|+-. ...|...|+++...+.+.+. +.+...+.-+.+.++..+......+|-..+..+....-..+..+.+.++.+
T Consensus 60 aqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~l 139 (307)
T PF04118_consen 60 AQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGL 139 (307)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 7777765 45899999999999988764 456777888899999988877788888888887765545555777888888
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 264 ~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
+..++..+.++..+....++..+..+...
T Consensus 140 i~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 140 ILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 88888888877777777777776666543
No 196
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.02 E-value=0.67 Score=46.87 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=145.6
Q ss_pred hHHHHHHHHHHHhc--c---ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh-hh
Q 002921 584 PLLECFTSIAQALG--A---GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-ES 657 (865)
Q Consensus 584 ~~~~~l~~l~~~~~--~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~-~~ 657 (865)
..+.+++.+.+++. . .+.|+-..+..++-++|+.... ..+=..|++++..+.+.+|.+. ..
T Consensus 27 D~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LP-------------sGVH~KaLevY~~IF~~ig~~~L~~ 93 (307)
T PF04118_consen 27 DYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALP-------------SGVHQKALEVYEYIFERIGPDGLAQ 93 (307)
T ss_pred HHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCC-------------hHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 45666666666665 1 2345555666666666653221 1344468899999998888652 22
Q ss_pred hcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 658 LVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 658 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
-++- +.|-++..+...+-.||..-+.++.......+..+.|.+..++..++..+.++ +.+..+.+...+..+..
T Consensus 94 dl~i--~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 94 DLPI--YSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKE 167 (307)
T ss_pred hcHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHH
Confidence 2221 34444444455667899999999999988888899999999999999999987 66888888888888887
Q ss_pred hccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhh-hhC-----------CCcccccHHHHHHHHHHHhccC
Q 002921 738 KARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA-WVC-----------PELVSPHMEHFMQPWCIALSMI 805 (865)
Q Consensus 738 ~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~-~~~-----------~~~~~~~~~~~l~~~~~~l~~~ 805 (865)
..+.. .+.+.+.-.+..+ +..|..++..+.+-. ... ...+.+--.-++..++..+.+.
T Consensus 168 ~v~~~------~F~~~lwl~ii~s----p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~ 237 (307)
T PF04118_consen 168 AVGDK------YFWQCLWLCIITS----PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDE 237 (307)
T ss_pred hcChh------HHHHHHHHHHhcC----cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCc
Confidence 77654 2244444444333 457777776654322 211 0011222345777777777763
Q ss_pred CChHHHHHHHHHHHHHHhhCchh-----hHhhHHHHHHHhhccC
Q 002921 806 RDDTEKEDAFRGLCAMVKANPSG-----ALSSLVFMCRAIASWH 844 (865)
Q Consensus 806 ~~~~~~~~~~~~l~~l~~~~~~~-----~~~~l~~~~~~~~~~~ 844 (865)
+.-.++.++..|.+-+..+... ..+....++.+....-
T Consensus 238 -~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~ 280 (307)
T PF04118_consen 238 -NILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVV 280 (307)
T ss_pred -hHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHH
Confidence 5567777788777777765543 2344555555554433
No 197
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.00 E-value=0.86 Score=46.75 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=49.2
Q ss_pred hHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhchhh---hHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHh
Q 002921 663 NLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVH---LQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (865)
Q Consensus 663 ~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 738 (865)
.++.+|...++. .++.+...|+.=+|+++++++.. +..|= .=..+.+.+.++ +++||-+|+.|+-.++.+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~----d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHE----DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCC----CchHHHHHHHHHHHHHhh
Confidence 478888888875 45777778888899999999743 22221 122344556666 789999999998877643
No 198
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.97 E-value=0.16 Score=42.35 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHh
Q 002921 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (865)
Q Consensus 233 ~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~ 312 (865)
.+...|+.++..+..+++..++.+....++++-++...+..+ +++..++++|..++.. ...+.+.|++++++-.+++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~-L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT-LDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHH
Confidence 456778889999999999888888888888888776666544 7899999999999876 2456788888888877766
Q ss_pred hc
Q 002921 313 NM 314 (865)
Q Consensus 313 ~l 314 (865)
..
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 43
No 199
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.67 Score=50.47 Aligned_cols=172 Identities=16% Similarity=0.089 Sum_probs=120.2
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHh--cCCCc------------HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCC
Q 002921 22 EQQISPSSTADKSQIWQQLQQYS--QFPDF------------NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (865)
Q Consensus 22 ~~~~s~~~~~~r~~a~~~L~~~~--~~p~~------------~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~ 87 (865)
.++..+|.+ +|..|-.-+-++. .+|+. .-++-.+|. +.-+.+|..|...+.+.+.+.|..+|
T Consensus 181 R~L~a~Ns~-VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~---d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 181 RGLKARNSE-VRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE---DPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HhhccCchh-hhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 445567888 9988888777754 46654 223445554 67899999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhh-CCChhHHHHHHHHHHHHHHhc-CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh
Q 002921 88 PSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (865)
Q Consensus 88 ~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (865)
+.....+...++.-+. +....||-+....+-.++... ......-++|.+-..+.+....+|-++..+|..+=..-...
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~ 336 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAK 336 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhh
Confidence 9988877777777775 667799999988888887653 23345667888888888888899999988887663321111
Q ss_pred cccCCCCCCCcchhhhHH--HH-HHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 166 LDSDVPGLAECPINIFLP--RL-LQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~--~l-~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
+ ..+.| .+ ..+-.|+-+.-|..+.-.+.++.-
T Consensus 337 f------------~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP 371 (1005)
T KOG1949|consen 337 F------------WKICPMDHILVRLETDSRPVSRRLVSLIFNSFLP 371 (1005)
T ss_pred h------------hccccHHHHHHHHhccccHHHHHHHHHHHHhhcC
Confidence 1 22222 22 333344555666666666666653
No 200
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.93 E-value=0.56 Score=51.62 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=108.8
Q ss_pred hHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHh
Q 002921 560 YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVC 639 (865)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 639 (865)
+...++|.+.+.+.+. .-+..++-++-.|+. +..-..|...+++.+..+++.. +..+....
T Consensus 309 ~~~kiLP~L~~el~n~----~~vp~~LP~v~~i~~--~~s~~~~~~~~~p~l~pi~~~~-------------~~~~~~l~ 369 (700)
T KOG2137|consen 309 LFQKILPTLVAELVNT----KMVPIVLPLVLLIAE--GLSQNEFGPKMLPALKPIYSAS-------------DPKQALLF 369 (700)
T ss_pred HHHhhhhHHHHHhccc----cccccccchhhhhhh--ccchhhhhhhhhHHHHHHhccC-------------Ccccchhh
Confidence 4456666666655321 111222222323332 2223345666677666665531 12233444
Q ss_pred hhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCC
Q 002921 640 CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK 719 (865)
Q Consensus 640 al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 719 (865)
.++-...|.+.+..+ .+.+ .++|+|+.++++.+..++..++..+..++....-.+. -+.++|.+........
T Consensus 370 i~e~mdlL~~Kt~~e--~~~~--~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt-- 441 (700)
T KOG2137|consen 370 ILENMDLLKEKTPPE--EVKE--KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTT-- 441 (700)
T ss_pred HHhhHHHHHhhCChH--HHHH--HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhccc--
Confidence 555555555554432 2233 5999999999999999999999999988887652221 2345666554422222
Q ss_pred CchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCC
Q 002921 720 ETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE 785 (865)
Q Consensus 720 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (865)
+..++.|++-|++.+++.+.. ..+++.+.+++.+-+..++.+....+....+++...+.
T Consensus 442 -~~~vkvn~L~c~~~l~q~lD~------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 442 -NLYVKVNVLPCLAGLIQRLDK------AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred -chHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 678999999999999965531 22344455554433222355666666666666665544
No 201
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.86 E-value=0.7 Score=49.53 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCCcHHHH----HHhhhcccCCCHHHHHHHH----HHHHHHHHhhhCc
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYL----AFILARAEGKSVEIRQAAG----LLLKNNLRTAYKS 85 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~-~~p~~~~~l----~~il~~~~~~~~~~R~~a~----~~L~~~i~~~w~~ 85 (865)
.-+.+++..+.|+|+. .|......|.++. +.++.-..+ ..++.+ -.+...++.+. ..+...+...-..
T Consensus 133 ~fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~--fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYR--FIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH--HHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 4466777777888888 8888888888854 555543332 222221 00111122222 2222222222224
Q ss_pred CCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 86 MSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
+.++.+..++..++.+.+.+ -......++.++..++..++ ..-..++..++...--.++.-...-+.-+..+++.+++
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH
Confidence 67888889999999988876 44568889999999998873 34456667777766655655555566777777776654
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH--hccccHHhHHhHHHHHHHHHHhhC-----CCCHHH
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF--IMLMPSALFVSMDQYLQGLFLLSN-----DPSAEV 237 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~ 237 (865)
.-- ......++..+.+++++++..|-..|+..+.+- +.. +.++-..+++.++..+. +-+..+
T Consensus 289 ~~f-------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 289 EEF-------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSL----ISQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HHH-------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHH-------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 211 234577888889999999999999888776432 222 22333445555555432 336789
Q ss_pred HHHHHHHHHHHHhhchhhhhh
Q 002921 238 RKLVCAAFNLLIEVRPSFLEP 258 (865)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~ 258 (865)
|..+..++..+.+..++.+..
T Consensus 358 r~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999888876654
No 202
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=6.5 Score=47.69 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhh-CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCC
Q 002921 368 RKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDK 445 (865)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~ 445 (865)
..++..+.+.+.... |....+.++..+.....++ .+|++|.+.+..+....-... -.......+|-..+...++|.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~--~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS--STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 455666666666665 5566777777776533333 239999998888876554222 123456677888899999999
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 002921 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (865)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~ 523 (865)
...||..|..+++-+...-... ... ............. +..-.-.|.-.++.++-..+-.+..+++..+.
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~----~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQ----FVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM 1653 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccc----cch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH
Confidence 8899999998887665532211 011 1112222222221 22233456677787777666555555565555
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHhccc
Q 002921 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (865)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (865)
.+.....+ .......+-+++..+-+...+.
T Consensus 1654 ~Ls~fa~e-~~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1654 NLSSFARE-SAAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred HHHhhcCC-chHHHHHHHHHHHHHHHHhhhh
Confidence 44333332 2334445556666555554443
No 203
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.80 E-value=2.4 Score=43.74 Aligned_cols=184 Identities=14% Similarity=0.206 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCC-Hh------HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC---ChHH
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMS-PS------NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLE 131 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~-~~------~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~w~~ 131 (865)
..+-+.|.-++..+.+.++..-..-. +. .+..+...|+.+-. ++.+--.++.++...++++.-. -+++
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 56788888888888888876544322 21 11233333444333 4455556666777766653100 0012
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
.+-.+.+.+..++-++--.|+.++..+.......... .+....+.++..+-+++++++...|+.+++.|+.++..-
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~----fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE----FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 2233667777777788888888888877664432110 112345888888899999999999999999999998532
Q ss_pred c--HHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 212 P--SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 212 ~--~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
. .....++ +.-+..++.++.+++..++-.|+-++.-++.+
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 1 1122222 34577788889999999999999999888765
No 204
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=1.5 Score=53.04 Aligned_cols=238 Identities=16% Similarity=0.092 Sum_probs=147.5
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc-HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhh
Q 002921 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
++.-+..+++-+...|+..+..|+..+..++.... +.....++.+.....+++.|.+..+|.....++..+.....+.+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556778888888999999999999999987643 33333466666666777889999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccC-ChhhhhhhhhcccCCCCCc
Q 002921 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY-ADDDESLVEAEEDESLPDR 335 (865)
Q Consensus 257 ~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~d~~~~~~~~~~~~~~~ 335 (865)
.+|+..+++..+...-|.+..+...|...+......+..+....-.-+.+.+.+...+.. +++........
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~-------- 190 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL-------- 190 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc--------
Confidence 999999999998888888888888888777665443111111111223334433333222 22111100000
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc--chh------hh--hHHHHHHhhccCCCcc
Q 002921 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL------PT--LMPVIQAKLSASGDEA 405 (865)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~------~~--~~~~l~~~l~~~~~~~ 405 (865)
. .+|-+....++-..+..++..+....|+ +.. .. -...+...+++..
T Consensus 191 ------------------s--~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~--- 247 (1312)
T KOG0803|consen 191 ------------------S--SEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKS--- 247 (1312)
T ss_pred ------------------c--hHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCC---
Confidence 0 0111112224445566777777766654 111 11 1234455666666
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhc-cHHHHHHHHHhccCCCC
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYP-HLSEIVAFLIPLLDDKF 446 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~d~~ 446 (865)
...|.+....+..+.......+.+ ....+-+.+.....+.+
T Consensus 248 ~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 248 PSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred cchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 788888888888888776655333 33334444555554444
No 205
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=4.5 Score=45.16 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
++.+..+++.+...|-.+|..++..+..+...-+..+.+-. ...+.=+..++..|.|....+|..|+-.|..++.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l-----l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL-----LVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH-----HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 56788888888888899999999999999988776553310 1124456678889999999999999999999987
Q ss_pred cccHH-hHHhHHHHHHHHHHhhCCC---CH-HHHHHHHHHHHHHHhh
Q 002921 210 LMPSA-LFVSMDQYLQGLFLLSNDP---SA-EVRKLVCAAFNLLIEV 251 (865)
Q Consensus 210 ~~~~~-~~~~~~~~l~~l~~~~~~~---~~-~~r~~~~~~l~~l~~~ 251 (865)
..+.. -.-.+++....++..+... +. -+...++..+..+.+.
T Consensus 196 ~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 196 DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 65432 1234566777788776532 22 3445566666666654
No 206
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=12 Score=49.57 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c----cchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002921 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA----A----EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (865)
Q Consensus 478 ~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~----~----~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 549 (865)
..++++++.++...+..++..+..++..+.... + ....|.++.+++.+.....+.....+...+..|+.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 567889999999888899999999998877653 2 22467788888888888777666555555555555555
Q ss_pred HhcccCCchhhHhhhhHHHHHHHhcCC
Q 002921 550 AVGFELNQPVYLDILMPPLIAKWQQLP 576 (865)
Q Consensus 550 ~~~~~~~~~~~~~~l~~~l~~~l~~~~ 576 (865)
.+...+. -.+...++..+...+....
T Consensus 1063 ~~~~~~l-~d~~~d~~~~l~fvl~d~~ 1088 (3550)
T KOG0889|consen 1063 SMPSLWL-LDFQVDILKALFFVLKDTE 1088 (3550)
T ss_pred hchHHHH-HHHHHHHhhhHHHhhcCCc
Confidence 4442211 1344455555555555443
No 207
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.65 E-value=0.17 Score=42.19 Aligned_cols=78 Identities=12% Similarity=0.256 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHH
Q 002921 675 DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLC 753 (865)
Q Consensus 675 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~ 753 (865)
.+...|..++..++.+++.+++.+.++.++++-.+...+..+ +.+..++.+-..++.... +++.|.+++++-.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~------~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP------ELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh------hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 566778899999999999888888888888888887777654 789999999999999886 5678888888887
Q ss_pred HHHHh
Q 002921 754 LVPIL 758 (865)
Q Consensus 754 l~~~l 758 (865)
+.+.+
T Consensus 101 l~~~~ 105 (107)
T PF08064_consen 101 LLPLW 105 (107)
T ss_pred HHHhc
Confidence 77755
No 208
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.52 E-value=0.39 Score=39.74 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=70.0
Q ss_pred hHHhHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhh
Q 002921 215 LFVSMDQYLQGLFLLSNDP----SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (865)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~ 290 (865)
+.+++=.++..+-..+.|. ....|+.++.++..+++..+..+....++++-++...+. .++.+..|+++|..+.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 3444444455554444443 335688899999999998888888888888888777666 4569999999999987
Q ss_pred ccCCchhhHHhhhhhHHHHHHhh
Q 002921 291 EAQLPHENLKEFLPRLVPVLLSN 313 (865)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~ll~~ 313 (865)
.. ...+.+.+.+++++..++++
T Consensus 83 ~~-L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 83 KT-LKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHh
Confidence 76 23466788888888777654
No 209
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.52 E-value=1.7 Score=48.10 Aligned_cols=249 Identities=16% Similarity=0.136 Sum_probs=141.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCCc--HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhH-
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDF--NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN- 90 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~-~~~~p~~--~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~- 90 (865)
+++...|...++.+.+ +|-....-+.. +..++.. +.+|-.+... +..+.. .+++. +.+.|..++...
T Consensus 239 ~el~~~l~k~l~~~~~-~rp~~~~l~~~~ff~D~~~~aLrfLD~l~~k--dn~qKs-----~Flk~-Ls~~ip~fp~rv~ 309 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSA-VRPTLDLLLSIPFFSDPGLKALRFLDDLPQK--DNSQKS-----SFLKG-LSKLIPTFPARVL 309 (700)
T ss_pred HHHHHHHHHHhcCCcc-cCcchhhhhcccccCCchhhhhhhccccccc--CcHHHH-----HHHHH-HHHhhccCCHHHH
Confidence 4678888889999988 88733333333 2345543 3344444432 222232 23433 667788888643
Q ss_pred HHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccCCh-hHHhHHHHHHHHHHhhchhhccc
Q 002921 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
++.+...+...+.+.. .--..--.+-.|+..... ..-+.++|.|...++-.++ ..+..-+.=+..|.+....
T Consensus 310 ~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~---- 383 (700)
T KOG2137|consen 310 FQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP---- 383 (700)
T ss_pred HHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh----
Confidence 3455555555553321 001111123334443322 2346677888887774332 2222222222333443332
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHH
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~r~~~~~~l~~ 247 (865)
+...+.++|.+...+.+.+..++..+++.+..+.+.++..+.. ..+++.+..+ ....+..++..++.|+..
T Consensus 384 ------e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~~~ 455 (700)
T KOG2137|consen 384 ------EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCLAG 455 (700)
T ss_pred ------HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHHHH
Confidence 2345889999999999999999999999999999887533222 2245555543 234467788889999998
Q ss_pred HHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
+++..... ..+ +.+..+....+..++++....+.....+
T Consensus 456 l~q~lD~~--~v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 456 LIQRLDKA--AVL-DELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHH--HhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88554432 223 3334445556666777776666655544
No 210
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.42 E-value=4.4 Score=42.97 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=108.5
Q ss_pred cchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh--hhHh-----------
Q 002921 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV--HLQA----------- 700 (865)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~----------- 700 (865)
..+....+.++..++...+..+...... ++|.++..+-+....+|..|..+...+....+. .+..
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~--W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADI--WFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLE 225 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccc
Confidence 3556678888899998888888777765 888888888788889999888776666655542 1111
Q ss_pred ---hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 002921 701 ---RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITL 776 (865)
Q Consensus 701 ---~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (865)
+...+.+.+.+.+.+.+ ...-.--+|..-......+ -+-.+++..++...-..+.+++ +.++..|..+=
T Consensus 226 ~~~~~~~~~~~L~~mi~~~~----~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d---~~~k~~A~~aW 298 (372)
T PF12231_consen 226 NGKLIQLYCERLKEMIKSKD----EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSD---PQVKIQAFKAW 298 (372)
T ss_pred cccHHHHHHHHHHHHHhCcC----CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCC---HHHHHHHHHHH
Confidence 22233344444444421 1111122343333332221 2234567777777777777764 45666665554
Q ss_pred Hhhhh---hCCCcccccHHHHHHHHHHHhccCCCh----HHHHHHHHHHHHHHhh
Q 002921 777 GRLAW---VCPELVSPHMEHFMQPWCIALSMIRDD----TEKEDAFRGLCAMVKA 824 (865)
Q Consensus 777 ~~l~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~ 824 (865)
.+++. .++......+..+..++...+...... +.+..++..+++++..
T Consensus 299 ~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 299 RRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 44443 222223345666777776666655444 5677888888888875
No 211
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.27 E-value=0.2 Score=45.11 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=74.5
Q ss_pred hhccHHHHHHHHHhccC------------------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 427 LYPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 427 ~~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
+.++++.++|.++.... |.--.+|.+|..++-.+.+.+.. .-.+..++..+..++
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhc
Confidence 45788889999887654 44458999999999988886542 223667788999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Q 002921 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (865)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 530 (865)
.| +..++.-++..+..++...+..+.+.++.+.+.+...++
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99 899999999999999988777777777888887777774
No 212
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.21 E-value=2.3 Score=43.84 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhhhCc------chhhhhHHHHHHhhccCCCcchhHHHH-HHHHHHHHHhchhhhhhccHHHHHHHHH
Q 002921 367 LRKCSAAALDVLSNVFGD------EILPTLMPVIQAKLSASGDEAWKDREA-AVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~~r~~-a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (865)
+|+....++.......++ .++++++..+..-.++.. +..|+. .+.+++.++...++.+.+.++.++..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~---p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSV---PDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS----GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCC---ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 556666666666665543 234444443322223344 666765 4566677777777766677777666555
Q ss_pred h----ccCC---CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc
Q 002921 440 P----LLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (865)
Q Consensus 440 ~----~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (865)
. .+++ ..|..|..-...+..+.+++.+.+- ......+..++..+.-++++++..|...++.++..+++....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~-~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALL-QLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHH-HS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHH-cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4 3432 4689999999999999888654210 124567889999999999999999999999999999987643
Q ss_pred --------chhhhHHHHHHHHHHHhccc
Q 002921 513 --------ELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 513 --------~~~~~~~~i~~~l~~~l~~~ 532 (865)
-...|+-.++..++..+.+.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 23445556666666665443
No 213
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=4.9 Score=42.00 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=84.5
Q ss_pred chhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhH-----hhhhHHHHHHHhcCCCCCcchhhHHH
Q 002921 513 ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL-----DILMPPLIAKWQQLPNSDKDLFPLLE 587 (865)
Q Consensus 513 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~~~~~ 587 (865)
.+..|+..+... +...+++ ...++|+|+++.-.-++. +|. ..++|.+.+.+....+++.-+..++-
T Consensus 501 ~FidyvgdLa~i----~~nd~~E--~F~~EClGtlanL~v~dl---dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 501 MFIDYVGDLAGI----AKNDNSE--SFGLECLGTLANLKVTDL---DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred HHHHHHHHHHHH----hhcCchH--HHHHHHHHHHhhcccCCC---CHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 345565555443 3333332 367899998887432222 332 46778888888765434332234444
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhccc-chHHH
Q 002921 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ-SNLRD 666 (865)
Q Consensus 588 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~-~~l~~ 666 (865)
.+|+++....-...---..+++.+++.|+..+. |.+++...+-++-.++.+ +....++-+ ...-.
T Consensus 572 ~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Qe------------DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~A 637 (791)
T KOG1222|consen 572 ACGTMARDLDCARLLAPAKLIDTLIELLQACQE------------DDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGA 637 (791)
T ss_pred HhhhhhhhhHHHHHhCccccHHHHHHHHHhhcc------------cchHHHHHHHHHHHHHHH--HHHHHHHHhhccchH
Confidence 444444322111000112467777777776531 446655555555555544 222233322 23555
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002921 667 MLLQCCMDDASDVRQSAFALLGDLARV 693 (865)
Q Consensus 667 ~l~~~l~~~~~~vr~~a~~~l~~l~~~ 693 (865)
.++...+|.+.++|..+=.++.-++.+
T Consensus 638 ylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 638 YLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 677778889999987766666655554
No 214
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.10 E-value=0.19 Score=45.30 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=84.6
Q ss_pred hHhhHHHHHHHHHHhcCCCC--------------CCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchh
Q 002921 698 LQARLSDFLDIAAKQLNTPK--------------LKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEE 763 (865)
Q Consensus 698 ~~~~~~~~l~~l~~~l~~~~--------------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~ 763 (865)
+.|+++.++|.+...+.-.. ++++.++|.+|..++..+...+...+. +..++..+..-+.+.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D~-- 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKDE-- 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCCc--
Confidence 45788899999988766542 134789999999999999998776652 555677777777663
Q ss_pred hhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccC--CC---------hHHHHHHHHHHHHH
Q 002921 764 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMI--RD---------DTEKEDAFRGLCAM 821 (865)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~--~~---------~~~~~~~~~~l~~l 821 (865)
.+++.-+...+.+++..+|..+.+.++.+...+-..+..+ .+ .+..+.++++...+
T Consensus 79 --~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 79 --HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp --HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 5688888899999999999998888888888888777542 11 23344566666666
No 215
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.07 E-value=0.39 Score=48.60 Aligned_cols=144 Identities=13% Similarity=0.188 Sum_probs=100.6
Q ss_pred cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhc----ccCCCCCCCcchhhhHHHHHHHhc--------CCC
Q 002921 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL----DSDVPGLAECPINIFLPRLLQFFQ--------SPH 193 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~l~--------~~~ 193 (865)
...|+-++|.++..+.+.++..|..|+.+|..+.+.++... ... | ..+.+.+.+...+. +.+
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~t--G----l~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRT--G----LFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHc--C----hHHHHHHHHHHHhhcCCCCCCchhh
Confidence 46899999999999999999999999999999999776532 221 2 23555555666665 456
Q ss_pred HHHHHHHHHHHHHHhcccc----HHhHHhHHHHH-HHHHHhhCC----CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 002921 194 TSLRKLSLGSVNQFIMLMP----SALFVSMDQYL-QGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (865)
Q Consensus 194 ~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~l-~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (865)
..+-..|..|+..++.... ..-...+..++ +.++..... +...++...++.+..++...+-....|+..++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii 267 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6788888888888865321 11122232223 334443321 24677888888888888888888888999999
Q ss_pred HHHhhhcCCCC
Q 002921 265 EYMLQVNKDTD 275 (865)
Q Consensus 265 ~~l~~~~~~~~ 275 (865)
+.+.+.+.+.+
T Consensus 268 ~~l~~~l~npf 278 (282)
T PF10521_consen 268 PVLSQILENPF 278 (282)
T ss_pred HHHHHHhcCCC
Confidence 99888776653
No 216
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.02 E-value=0.53 Score=48.96 Aligned_cols=153 Identities=14% Similarity=0.220 Sum_probs=89.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcC---CCCHHHHHHHHHHHHHhhccCCchhhHHh
Q 002921 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK---DTDDDVALEACEFWHSYFEAQLPHENLKE 301 (865)
Q Consensus 225 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 301 (865)
.+...+.+.+...|..++..|. . ..-+.+.++-++.++..... +.+-..-...+.+..++...+ .-.+.+
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~---t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~--~l~le~ 254 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLR---T--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP--NLHLEP 254 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhc---c--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC--CCchHH
Confidence 3333333455666666665543 1 12222333333333332221 113444556667777776653 235789
Q ss_pred hhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh
Q 002921 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (865)
Q Consensus 302 ~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~ 381 (865)
|+.+++|.++.++....-. .. . +..+.|.+|..|..++..+++.
T Consensus 255 Ylh~Lip~vltclv~~~l~-------------------------------~~---~--~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLC-------------------------------SR---P--PDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred hHHHHHHHHHHHhhhHhhc-------------------------------CC---C--CCchHHHHHHHHHHHHHHHHHH
Confidence 9999999998877643210 00 0 0125799999999999999999
Q ss_pred hCc---chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002921 382 FGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (865)
Q Consensus 382 ~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (865)
++. .+.+.+...+.+.+.++. ......++|+..|+.+..
T Consensus 299 f~~~y~~l~~ri~~tl~k~l~d~~-~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 299 FSTSYNTLQPRITRTLLKALLDPK-KPLTTHYGAIVGLSALGP 340 (343)
T ss_pred cCCCCCcHHHHHHHHHHHHHcCCC-CCcchhhHHHHHHHHhCc
Confidence 975 345566656666555543 115568999999988753
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.52 Score=49.87 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred cCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhh-hhhCCChhHHHHHHHHHHHHHHh
Q 002921 45 QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP-CLGAADRHIRSTVGTIVSVVVQL 123 (865)
Q Consensus 45 ~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~-~l~~~~~~vr~~~a~~l~~i~~~ 123 (865)
.+..+--++-+++. +.++-.|..++..+.-.... .....+...++. ..++.+..||+++.-+++-++-.
T Consensus 513 rqe~add~I~ell~---d~ds~lRy~G~fs~alAy~G-------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 513 RQEMADDYINELLY---DKDSILRYNGVFSLALAYVG-------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hHHHHHHHHHHHhc---CchHHhhhccHHHHHHHHhc-------CCcchhHhhhheeecccCchHHHHHHHHheeeeEec
Confidence 33333334444443 45667776655443221111 112234455565 47889999999998888887766
Q ss_pred cCcCChHHHHHHHHHhhc-cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHH
Q 002921 124 GGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (865)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 202 (865)
+ +++++...+.+. +-++.+|.+...+|+-.|..-+.. .-...+-.+..|+..-||++|+-
T Consensus 583 D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--------------~a~diL~~L~~D~~dfVRQ~AmI 643 (926)
T COG5116 583 D-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--------------VATDILEALMYDTNDFVRQSAMI 643 (926)
T ss_pred C-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------------HHHHHHHHHhhCcHHHHHHHHHH
Confidence 5 455555555554 458899999999998888765542 23444455567888899999999
Q ss_pred HHHHHhccccHHhHHhHHHHHHHHHHhhCCC
Q 002921 203 SVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (865)
Q Consensus 203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 233 (865)
+.+-+.-...+++.+....+...+.+.+.+.
T Consensus 644 a~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 644 AVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 9888875555555566655555555555443
No 218
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.90 E-value=5.5 Score=41.18 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=66.4
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH----hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ----ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 662 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
+.++..+..++.+++.+....+.-++|++++.-..-+. .+++.++..+.+. ..++.+.++..+++.++.+++.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~---~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE---KDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh---cCCCccchhHHHHHHHHHhccc
Confidence 34999999999999999988888899999987542221 3444455444432 2223367788888899988875
Q ss_pred hcc--ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 002921 738 KAR--QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITL 776 (865)
Q Consensus 738 ~~~--~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (865)
-.+ ..|.| ..+.+.+++.+.... +.+....++++
T Consensus 391 Pv~nka~~~~--aGvteaIL~~lk~~~---ppv~fkllgTl 426 (604)
T KOG4500|consen 391 PVSNKAHFAP--AGVTEAILLQLKLAS---PPVTFKLLGTL 426 (604)
T ss_pred cCCchhhccc--cchHHHHHHHHHhcC---CcchHHHHHHH
Confidence 443 23333 224556666665442 34444444444
No 219
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=94.83 E-value=2.5 Score=37.84 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=85.3
Q ss_pred HHHHHHhhhhhCC--ChhHHHHHHHHHHHHHHh---cCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHH-hhchhhc
Q 002921 93 YIKSELLPCLGAA--DRHIRSTVGTIVSVVVQL---GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (865)
Q Consensus 93 ~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~---~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~-~~~~~~~ 166 (865)
.|++.|+.+|... ....-+.++.+++.+|.. ...+.|++|...+.... ..++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 4778888888643 333445556666666654 26789999998887765 2222 34677776665 2222222
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCC---CHHHHHHHHH-HHHHHhcccc-----HHhHHhHHHHHHHHHHhhCCCCH-H
Q 002921 167 DSDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLG-SVNQFIMLMP-----SALFVSMDQYLQGLFLLSNDPSA-E 236 (865)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~a~~-~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~-~ 236 (865)
.+.++.++|.+.+.|.++ +.+....|+. ++...+.... +.+.+.++.++..+..+...+.+ .
T Consensus 79 --------~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 79 --------IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred --------HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 245788999999999887 3343444442 3333343322 22333344445555555555544 6
Q ss_pred HHHHHHHHHHHHHhh
Q 002921 237 VRKLVCAAFNLLIEV 251 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~ 251 (865)
.-.++++-+..+.+.
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777666654
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.68 E-value=0.31 Score=39.14 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=62.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh
Q 002921 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 255 (865)
..+...+.-++|+.+-+|..++..|..+++... .-....+.++..+...+.|+++-+--.|+++|..++..+|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 346677788899999999999999999997654 223446777888888999999999999999999999988874
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.65 E-value=4.8 Score=39.41 Aligned_cols=190 Identities=16% Similarity=0.056 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhh---
Q 002921 26 SPSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP--- 100 (865)
Q Consensus 26 s~~~~~~r~~a~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~--- 100 (865)
.++++ .....-..|-.+.... ......++++..- +......+..+..++- .-|..-+ -....++..+..
T Consensus 12 ~~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~----~lw~~~~-r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLT----LLWKAND-RHFPFLQPLLLLLIL 85 (234)
T ss_pred CCChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHH----HHHHhCc-hHHHHHHHHHHHHHh
Confidence 34554 6666666676665444 4444444443221 1333444445544443 3344311 111333333333
Q ss_pred -hh---hC--CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhh-ccCChhHHhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 101 -CL---GA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 101 -~l---~~--~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
.. .+ ......-..+..+..++...+. .|+++++.+...+ .+.++..+..++..+..+++.-.-.
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-------- 156 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-------- 156 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc--------
Confidence 22 12 2344555666788888888755 9999999999999 7778888999999999998532111
Q ss_pred CCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhc--cccHHhHHhHHHHHHHHHHhhCCCC
Q 002921 174 AECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIM--LMPSALFVSMDQYLQGLFLLSNDPS 234 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (865)
+...+..+.+-+.. ..+.+-...+..+.-+-. ...+++......++..+++.....+
T Consensus 157 ----~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 157 ----FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred ----HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 23445555555533 244444433333222211 1113344455667777777776554
No 222
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.65 E-value=0.46 Score=39.34 Aligned_cols=77 Identities=16% Similarity=0.313 Sum_probs=61.9
Q ss_pred ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHHH
Q 002921 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCL 754 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l 754 (865)
+...|..++..++.+++.+|+.+..+.++++-.+...+..+ +.+..|+.+-..++.... +++.|.+++++-.+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~------eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP------ELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44568899999999999999888888888888888877654 799999999999998886 45666677666666
Q ss_pred HHHh
Q 002921 755 VPIL 758 (865)
Q Consensus 755 ~~~l 758 (865)
.+.+
T Consensus 102 ~~~~ 105 (107)
T smart00802 102 LPLW 105 (107)
T ss_pred HHhc
Confidence 6543
No 223
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.61 E-value=0.35 Score=38.83 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (865)
.+..++..++||.+.+|..++..|.++.+.-. ......+.++..++..++|+++-|-..|..++..++...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 35567778899999999999999998887532 1345678899999999999999999999999999988644
No 224
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.58 E-value=8.3 Score=41.80 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHhcCcCChHHHHH-HHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~-~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
-..|-.+|.++|.++..-+...+..++. .|...++++....|..|..++.+.++........ ...+.+.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHH
Confidence 4468889999999999877778888887 5999999999999999999999998877653221 0125666777
Q ss_pred HHHhcCCC-----------HHHHHHHHHHHHHHhc
Q 002921 186 LQFFQSPH-----------TSLRKLSLGSVNQFIM 209 (865)
Q Consensus 186 ~~~l~~~~-----------~~vr~~a~~~l~~~~~ 209 (865)
...|+++. ..+|..+-..+..+..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777431 2566666666666654
No 225
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.51 E-value=4.8 Score=38.81 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=65.0
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC--CChHHHHHHHHHHHhhHHHHhhhh
Q 002921 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDI 468 (865)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~ 468 (865)
+..+.+.+..++ ...|+.+.++||++.... .+|.+.+.|.| .+|.||..|+.+||.++..
T Consensus 189 I~al~~~l~~~S---alfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----- 250 (289)
T KOG0567|consen 189 INALIDGLADDS---ALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----- 250 (289)
T ss_pred HHHHHHhcccch---HHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----
Confidence 334444555555 788888899999886532 35555555544 6889999999999987752
Q ss_pred CCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
..++.|.+.++|+++.|++.|..+|...-
T Consensus 251 ----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 251 ----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 55677888889999999999988887554
No 226
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.47 E-value=0.39 Score=53.12 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCCCcHHHHHHhhh--c----c--cCCCHHHHHHHHHHHHHHHHhhhC
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFILA--R----A--EGKSVEIRQAAGLLLKNNLRTAYK 84 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~---~~p~~~~~l~~il~--~----~--~~~~~~~R~~a~~~L~~~i~~~w~ 84 (865)
.+..++-+..+++.+ +-+.|+..|+++. +++.++..|..+.. . + ...++..|.-...+|.+....
T Consensus 238 ~~~~~liAsad~~~~-V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A--- 313 (501)
T PF13001_consen 238 RFPPLLIASADSNSS-VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA--- 313 (501)
T ss_pred HHhheeeEEeCCcch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---
Confidence 345556666677777 9999999999986 36778887777765 1 0 123456666555555554322
Q ss_pred cCCHhHHHHHHHHHhhhhhCC--ChhHHHHHHHHH---HHHHHhcCcCChHH----HHHHHHHhhc--------cCChhH
Q 002921 85 SMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIV---SVVVQLGGIAGWLE----LLQALVTCLD--------SNDINH 147 (865)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l---~~i~~~~~~~~w~~----ll~~l~~~l~--------~~~~~~ 147 (865)
......+.+.+..++..+ +..+|..+.+.+ ..+..+.++..... ++..+...++ +.+...
T Consensus 314 ---a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 314 ---ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIEL 390 (501)
T ss_pred ---HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHH
Confidence 112233445556666655 667777777777 66665544333322 2233333332 234578
Q ss_pred HhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 148 MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 148 r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
|..+..+|+.+++..+..+..+ -.++..+++.|.++.+++|.+.-+||..++...
T Consensus 391 R~~aYe~lG~L~~~~p~l~~~d---------~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSLFSKD---------LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHHHHHHHHHccCccccccc---------HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988766443 466778888888889999999999999998664
No 227
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.33 E-value=7.5 Score=40.25 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=73.5
Q ss_pred hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhh----hccHHHHHHHHHh-ccCCCChHHHHHHHHHHHhhHH
Q 002921 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (865)
Q Consensus 388 ~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~ 462 (865)
|.++..+...+.+.+ ....-.+..++|.++..-...+ ...++.++..+.+ .--|.+..++.+++.++..+..
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 457888888998888 8888999999999987543222 2344445554444 2346677888999999988765
Q ss_pred HHhhhhCCCcchhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 463 FIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
-.+. ...+. ..+.+.++..++...|+|.-.-..++..+.+
T Consensus 391 Pv~n------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 391 PVSN------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred cCCc------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 3321 11111 3466777777777777776665555554443
No 228
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.32 E-value=1.7 Score=50.26 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcc----CChhHHhHHHHHHHHHHhhchhhc------ccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHH
Q 002921 130 LELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVL------DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKL 199 (865)
Q Consensus 130 ~~ll~~l~~~l~~----~~~~~r~~al~~L~~l~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~ 199 (865)
++++..+..++.+ .++..+..++..++.++..+...- ........+.+.+.+.+.+-...+..+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 5677777777664 356788899999999987654431 111111223344555555554555677788999
Q ss_pred HHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCH
Q 002921 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP---SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD 276 (865)
Q Consensus 200 a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 276 (865)
++++|+++... ..++.+...+.+. ...+|..|+.+|..++...++.+.+.+-.++. ....+.
T Consensus 510 ~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~-----n~~e~~ 574 (618)
T PF01347_consen 510 YLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM-----NTTEDP 574 (618)
T ss_dssp HHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH------TTS-H
T ss_pred HHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc-----CCCCCh
Confidence 99999998531 1233444444333 57789999999988877777655443333331 234567
Q ss_pred HHHHHHHHHHHH
Q 002921 277 DVALEACEFWHS 288 (865)
Q Consensus 277 ~v~~~a~~~l~~ 288 (865)
++|..|+..+..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 899999876544
No 229
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.19 E-value=1.5 Score=42.65 Aligned_cols=145 Identities=14% Similarity=0.238 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCC------CCHHHHHHHHHHHHHhhccCCchhhHHhhhh
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD------TDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 304 (865)
+..+.+.|.+|+.+|.. . +-+.+++|..++.+.+ .+-++-...+....++.+. ..-.+.||+.
T Consensus 208 dEs~~~~r~aAl~sLr~----d-----sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N--~~iFvdPY~h 276 (450)
T COG5095 208 DESDEQTRDAALESLRN----D-----SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN--KYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHhcc----C-----ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC--CceeecHHHH
Confidence 34467788888877742 1 1223333333332221 1223333444455555444 3345679999
Q ss_pred hHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc
Q 002921 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (865)
Q Consensus 305 ~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~ 384 (865)
+++|.+++++.... ..++| ++.+.+.+|..|+.+++..+..+|.
T Consensus 277 qlmPSilTcliakk-----lg~~p-------------------------------~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 277 QLMPSILTCLIAKK-----LGNVP-------------------------------DDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHHHHHHHHHHHHH-----hcCCC-------------------------------cchhHHHHHHHHHHHHHHHHhhhhH
Confidence 99999987765311 00000 1123457999999999999999975
Q ss_pred c---hhhhhHHHHHH-hhccCCCcchhHHHHHHHHHHHHHhchh
Q 002921 385 E---ILPTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCI 424 (865)
Q Consensus 385 ~---~~~~~~~~l~~-~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 424 (865)
. .-|-+...+.. .+.... .....++|+.+++.+.....
T Consensus 321 ~YktLkPRvtrTllKafLD~~k--~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 321 SYKTLKPRVTRTLLKAFLDREK--TESTQYGALKGLSILSKEVI 362 (450)
T ss_pred hhhhhchHHHHHHHHHHHhccc--ccchhhhhhhhhhhhchhhe
Confidence 2 22333322222 222221 15677889999888876544
No 230
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.15 E-value=12 Score=42.23 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=76.4
Q ss_pred hhHhhhhhhhHHHHHhhhh---hh-hhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhH-HHHHHHHH
Q 002921 636 FVVCCLDLLSGLAEGLGSG---IE-SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL-SDFLDIAA 710 (865)
Q Consensus 636 ~~~~al~~l~~l~~~~~~~---~~-~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~ 710 (865)
..+.+..++.++....+.. .. .+++++..+|.+...++..+..|..++..++.++..... ..+.+ ...++.+.
T Consensus 535 TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv 612 (717)
T KOG1048|consen 535 TLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLV 612 (717)
T ss_pred HHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHH
Confidence 3444555555555432221 11 122445678888899988889999999999999987643 12222 24677777
Q ss_pred HhcCCCCCC--CchhHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 711 KQLNTPKLK--ETVSVANNACWAIGELAVKARQEISPIVM-TVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 711 ~~l~~~~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
++|-+..-. -.+++-.++|..+-+++......-..++. .=++.++.+..... ++...+.+...+..|-.
T Consensus 613 ~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~--S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 613 RCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH--SPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC--CHHHHHHHHHHHHHHHH
Confidence 777654210 02456667777777776432211111110 01334444443321 33455555555555554
No 231
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.56 Score=49.67 Aligned_cols=112 Identities=20% Similarity=0.123 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc-CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 484 (865)
-.+|.+|..+||-++-.-.+ .++..+..| .+-|+.||.....+||-.+..-. . ...+..+
T Consensus 566 DDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~---~~a~diL 626 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------D---KVATDIL 626 (926)
T ss_pred hHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------c---HHHHHHH
Confidence 55666666666654422111 222233333 33456777777777765544321 1 1233344
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhh
Q 002921 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRN 536 (865)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 536 (865)
-..+.|++..||..||.+++.++-.+.+.+.|.+..|...+.+.+.+.+...
T Consensus 627 ~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 627 EALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESG 678 (926)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhH
Confidence 4456688899999999999999999999999999999999999887765543
No 232
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.79 E-value=9.6 Score=39.52 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=106.3
Q ss_pred CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc------CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHH
Q 002921 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (865)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~------~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~ 121 (865)
.....+++++.. ...++.+| ....++-..++..-.. .....+...-...+..|...+..+-+..+.+++.++
T Consensus 65 ~~v~~fi~LlS~-~~kdd~v~-yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSH-IDKDDTVQ-YVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhch-hhhHHHHH-HHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 455556666653 33444444 5555555555432111 111112222345677888888888888899999998
Q ss_pred HhcC----cCChHHHHHHHHHhhcc-CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHH
Q 002921 122 QLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (865)
Q Consensus 122 ~~~~----~~~w~~ll~~l~~~l~~-~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 196 (865)
.... .....-....|...+++ .++..+..+.+||..++..-..+..- .. ..-...+++.+. -+..+-++
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~--v~--adg~~~l~~~l~--s~~~~~Ql 216 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF--VI--ADGVSLLIRILA--STKCGFQL 216 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee--ee--cCcchhhHHHHh--ccCcchhH
Confidence 8752 22334455666666666 56788888999998887753332110 00 011123333332 12246688
Q ss_pred HHHHHHHHHHHhccccHHhHHhHH--HHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhch
Q 002921 197 RKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 197 r~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~ 253 (865)
+-..+.|+..+.-+ | .+.+.+. .+++.+...+++. .+++-+-++.++..+++..+
T Consensus 217 QYqsifciWlLtFn-~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 217 QYQSIFCIWLLTFN-P-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred HHHHHHHHHHhhcC-H-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 88888888776532 1 1222221 2345555544432 34555566777777776554
No 233
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=1.6 Score=44.73 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=104.0
Q ss_pred HHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002921 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (865)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (865)
+...+.+-+ .++|..|+..+..+....+..+..++-.+++.+.+.+.|.+..||.+...++..++....+. ..
T Consensus 63 Ll~qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e----~~ 135 (393)
T KOG2149|consen 63 LLSQLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE----DQ 135 (393)
T ss_pred HHhhhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----hh
Confidence 334455566 89999999999988887666677788889999999999999999999999888766654322 34
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 531 (865)
.+++.-+++.+...|....+.+|..+...+..++..+++.+..+...+++.+...+..
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888999999999999999988877777666666666665543
No 234
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.56 E-value=1.9 Score=40.55 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=83.3
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 002921 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
....++.+++...+++..+|..|++.+..+++.. .-+-...+|.++.+..|+++.+|..|...+..+.+.++..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 3566788888899999999999999999998651 112223477788888899999999999999999999988876
Q ss_pred hhHHHHHHHHhhh----cCCCCHHH---HHHHHHHHHHhhccCCchhhHHhhhhhHHHHH
Q 002921 258 PHLRNLFEYMLQV----NKDTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (865)
Q Consensus 258 ~~l~~l~~~l~~~----~~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l 310 (865)
....+-+...... ..+..... ....+..|.+++.. .++.-+.++..++..+
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~--~r~~R~~Fl~~l~k~f 139 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS--NRKSRRKFLKSLLKQF 139 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc--ccHhHHHHHHHHHHHH
Confidence 5554433333222 12211111 34456667776663 2333334444444433
No 235
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.51 E-value=1.5 Score=45.40 Aligned_cols=185 Identities=16% Similarity=0.099 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHh----hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQA----RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 739 (865)
+-|++ ..++.++.-+...|+.++..++...+..... .++.++..+.+.++++ +.++...++.+++.++..-
T Consensus 107 ~~~fl-~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~----~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 107 YSPFL-KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS----DSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHHH-HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH----HH---HHHHHHHHHHHTSH
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHhCcc
Confidence 33444 4777789999999999999999887754433 4555555555544443 4556688889999987543
Q ss_pred c--ccccchHHHHHHHHHHHhc----CchhhhhhHHHHHHHHHHhhhhhCCCcccccH-HHHHHHHHHHhccCCChHHHH
Q 002921 740 R--QEISPIVMTVVLCLVPILK----HSEELNKSLIENSAITLGRLAWVCPELVSPHM-EHFMQPWCIALSMIRDDTEKE 812 (865)
Q Consensus 740 ~--~~~~~~~~~il~~l~~~l~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~ 812 (865)
. ..|. -...++.+.+++. .+......+...++.++.-+.- ++..+.... ..+++.++..+........-+
T Consensus 182 ~~R~~f~--~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 182 EYRQVFW--KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp HHHHHHH--THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred hhHHHHH--hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence 2 1121 1445566666661 1111234456666667766653 222111100 125666666666544444566
Q ss_pred HHHHHHHHHHhhCchhhH-----hhHHHHHHHhhcc-CCCccHHHHHHHH
Q 002921 813 DAFRGLCAMVKANPSGAL-----SSLVFMCRAIASW-HVRITLHLILLSV 856 (865)
Q Consensus 813 ~~~~~l~~l~~~~~~~~~-----~~l~~~~~~~~~~-~~~~~~~~~~~~~ 856 (865)
.++..+.+++...+.... ..+..+++.+.+- +.++++.+-+++|
T Consensus 259 v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 259 VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 788888888887774332 3344444444332 1222366666554
No 236
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=13 Score=40.11 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=99.7
Q ss_pred chhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHh
Q 002921 635 EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQ 712 (865)
Q Consensus 635 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~ 712 (865)
++|..+.+++..++-.+|+. .-+..+...++ +.+++.-++++..+..++++....-.+-+++++..+.+.
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl 438 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL 438 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC
Confidence 45667777777777777663 23333333332 468899999999999999887644444455555544432
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHH
Q 002921 713 LNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHME 792 (865)
Q Consensus 713 l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 792 (865)
.. ...+|..++..+|.+.+-...+- .+++.+++-+..-+... +..-.+..++.++...+.....++++
T Consensus 439 ----p~--Q~~~~~ts~ll~g~~~ew~~~~p-~~le~v~~~~~~~~~~~-----~~as~~a~~~~~i~~~c~~~~~~l~~ 506 (559)
T KOG2081|consen 439 ----PE--QAPLRYTSILLLGEYSEWVEQHP-ELLEPVLRYIRQGLQLK-----RLASAAALAFHRICSACRVQMTCLIP 506 (559)
T ss_pred ----cc--chhHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 11 23589999999999876553221 23333344333333222 12233334444444433333333443
Q ss_pred ---HHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCch-hhHhhHHHHHHH
Q 002921 793 ---HFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS-GALSSLVFMCRA 839 (865)
Q Consensus 793 ---~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~~~~~ 839 (865)
.++..+.+.+.+ ++-...++++..++...|. .+...+..+++-
T Consensus 507 ~~~~l~~~l~~~~~~----~e~a~l~~~~s~i~~~lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 507 SLLELIRSLDSTQIN----EEAACLLQGISLIISNLPAHKAKIALEELCEP 553 (559)
T ss_pred HHHHHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCHhhhhHHHHHHhhH
Confidence 444443333222 3434477888888887774 445556555543
No 237
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.43 E-value=2.5 Score=41.16 Aligned_cols=150 Identities=9% Similarity=0.117 Sum_probs=78.0
Q ss_pred hhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC------CHHHHHHH
Q 002921 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT------NKRVQEAA 499 (865)
Q Consensus 426 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~------~~~vr~~a 499 (865)
.+.-|++.+++.+ +...+...|.+|+.++.. ..-+++++|.++..+.+. +..+-...
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sLr~--------------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv 256 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESLRN--------------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTV 256 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc--------------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444566666554 445667888888766532 233455555555554432 12222333
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHHHhcc------cchh----hHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHH
Q 002921 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFGK------YQRR----NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (865)
Q Consensus 500 ~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~------~~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 569 (865)
.....+++++-.-.+.||+.++|+.++.++-. ++.. .+..+...++.++...+.... ..-+.+...++
T Consensus 257 ~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTll 334 (450)
T COG5095 257 VMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHH
Confidence 33334444444455789999999998887732 1111 233555666666665554332 22234444555
Q ss_pred HHHhcCCCCCcchhhHHHHHHHHHH
Q 002921 570 AKWQQLPNSDKDLFPLLECFTSIAQ 594 (865)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~~l~~l~~ 594 (865)
+.|-..+.....-..++.+++.+.+
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhch
Confidence 5554322111111356777766654
No 238
>PF05536 Neurochondrin: Neurochondrin
Probab=93.36 E-value=16 Score=40.85 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhh---CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhcc
Q 002921 367 LRKCSAAALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l 442 (865)
.+..|...+..++..- .+.-+-.-+|.+.+.+.+.++ -....-++.+|..++. .++.-...+. ..++.+...+
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHH
Confidence 5777888887776621 112233456777777766551 3677778888888883 3322221111 1344444444
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc------chhh
Q 002921 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE------ELAP 516 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~------~~~~ 516 (865)
.+ ++.....|+.++..+.........+ .....+..++..+-..+.......+-..|..+..++...+. .-..
T Consensus 150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN-QSFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh-CcchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 33 6777888888877766654321101 23445567777777777665566677788889888876631 1233
Q ss_pred hHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHHhccc
Q 002921 517 RLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFE 554 (865)
Q Consensus 517 ~~~~i~~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~ 554 (865)
....+...+..++++.-.+. +..++.....+.+..|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 56778888888887765543 447788888888887764
No 239
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.35 E-value=12 Score=39.40 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=140.7
Q ss_pred cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh--cccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHH
Q 002921 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSL 201 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~ 201 (865)
.-.|..+.+.+...+-+++..+|-+|+++++.++.+.... +.+ -.++.+ +...+.. .+..-|..|+
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~-------l~id~~---ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLK-------LHIDIF---IIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH-------cCCchh---hHhhhcccCCChHHHHHHH
Confidence 4578888888887666666999999999999988765431 111 011222 2333332 3456789999
Q ss_pred HHHHHHhcc--ccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhh--hHHHHHHHHhhhcCCCCHH
Q 002921 202 GSVNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDD 277 (865)
Q Consensus 202 ~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~ 277 (865)
+.+..+++. .+..+ -..++..+.....++++..|..+++++.+++-..|+.+.. -+..++..+. +..-+
T Consensus 90 kliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~----d~~~~ 162 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI----DGSFS 162 (371)
T ss_pred HHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH----hccHh
Confidence 999999886 22222 2345777888888888899999999999999888876421 2233444333 22223
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (865)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (865)
+....+..+..+.+.+..++.+++.++ +..++..+++.... ...++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~d--L~~l~apftd~~~~--------------------------------~~~~~ 208 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFD--LESLLAPFTDFHYR--------------------------------KIKDD 208 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCcc--HHHHHHhhhhhhcc--------------------------------ccccc
Confidence 555666667777777666665554332 22232222211000 00000
Q ss_pred CccccccccHHHHHHHHHHHHHhhhCcch---hh--hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002921 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEI---LP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (865)
Q Consensus 358 ~~d~~~~~~~r~~a~~~l~~l~~~~~~~~---~~--~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (865)
.+ ...-..+..++..+.+..+.-+ .+ .-+..+...+..+. ...|+..+..+..+..
T Consensus 209 ~~-----~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~---~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 209 RE-----LERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN---PEIRKAILDLLFDLLR 269 (371)
T ss_pred hH-----HHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC---HHHHHHHHHHHHHHHC
Confidence 00 0123445666666666664311 11 34555666677777 8889988888887765
No 240
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.18 E-value=15 Score=39.88 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHHHHHhhhCcchhhhhHH-HHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh-ccHHHHHHHHHh
Q 002921 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP 440 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~ 440 (865)
..++.|..|..+|+.++..++......++. .+..+++++. ...|..|.+.+...+......-. +..+.+.+.+..
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 446789999999999999998877766665 6889999988 89999999999999987764321 113445556666
Q ss_pred ccCCC
Q 002921 441 LLDDK 445 (865)
Q Consensus 441 ~l~d~ 445 (865)
.|.++
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66644
No 241
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=2 Score=44.18 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hchhhhhhhH
Q 002921 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHL 260 (865)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~-~~~~~~~~~l 260 (865)
+..++.-+.+-+..+|..|+.-+.......|..+..++-.+++.+.....|.+..+|...++.+..++. ..++.+.+++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 445666678889999999999999998887777777888888888888888889999999999887554 4455578899
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 261 ~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.-+++++...+.+..++++..++.++.-+++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999998887776
No 242
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.14 E-value=7 Score=44.67 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCcCChHHHHHHHHHhhccC----ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH
Q 002921 113 VGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (865)
Q Consensus 113 ~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~----~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (865)
+++++..+...- +..=++++..+..++.++ .+..+..++..++.++......-.... ......+.+.+.+.
T Consensus 376 a~~~~~~~~~~~-~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~----~~~~~~~~~~l~~~ 450 (574)
T smart00638 376 AAQLLAVLPHTA-RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP----DFVLEELLKYLHEL 450 (574)
T ss_pred HHHHHHHHHHhh-hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHH
Confidence 344444444332 112267888888887764 457888999999999875432211100 01124455555444
Q ss_pred h----cCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 002921 189 F----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (865)
Q Consensus 189 l----~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (865)
| +..+...+..++++|+++..-. ....+ .+.+. .-...+..+|..|+.+|..++...+..+.+.+-.++
T Consensus 451 l~~~~~~~~~~~~~~~LkaLGN~g~~~---~i~~l---~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 451 LQQAVSKGDEEEIQLYLKALGNAGHPS---SIKVL---EPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HHHHHhcCCchheeeHHHhhhccCChh---HHHHH---HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 4 4456667788899998875321 11222 22221 112335789999999999998888876654443333
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHH
Q 002921 265 EYMLQVNKDTDDDVALEACEFWHS 288 (865)
Q Consensus 265 ~~l~~~~~~~~~~v~~~a~~~l~~ 288 (865)
.....+.++|..|+-.+..
T Consensus 524 -----~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 524 -----LNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred -----cCCCCChHHHHHHHHHHHh
Confidence 2234678899998876543
No 243
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.60 E-value=18 Score=39.24 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC----cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~----~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~ 88 (865)
.++.+.+++...+.+... -|| .-+.|.++....+ |.-.+-.||+-.++....-|... +|+..+...-..-++
T Consensus 9 ~~~s~~~if~k~Q~s~aG-hrk-~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~--fl~~f~~Y~~~~dpe 84 (885)
T COG5218 9 SLESMQLIFNKIQQSSAG-HRK-SLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILS--FLKRFFEYDMPDDPE 84 (885)
T ss_pred HHHHHHHHHHHHhhhhhh-HHH-HHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHH--HHHHHHHhcCCCChh
Confidence 345556666666544333 343 4445555554333 34445555554334444445332 344444422222222
Q ss_pred --hHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcC---cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 89 --SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 89 --~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~---~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
+.-+++...++.++.+++..||....++++.+...-. ...+..|+..|...+-+..+.+|..|+.+|..+-+.-.
T Consensus 85 g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 85 GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 2345555666777778999999999999999887642 23456778888888888899999999999977654322
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~ 242 (865)
.. -+.+...+...++ ||+.+||+.|+..+..=-. ..+ -++....|.+-..|+.+.
T Consensus 165 ne------------en~~~n~l~~~vqnDPS~EVRr~allni~vdns--------T~p----~IlERarDv~~anRr~vY 220 (885)
T COG5218 165 NE------------ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNS--------TYP----CILERARDVSGANRRMVY 220 (885)
T ss_pred Ch------------HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCC--------cch----hHHHHhhhhhHHHHHHHH
Confidence 11 1344445555554 5788999998655422111 122 222323344444444433
Q ss_pred -HHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 002921 243 -AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (865)
Q Consensus 243 -~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l 286 (865)
.+|-.+.......+.+++- +++. .+.+.+..++..+.+.+
T Consensus 221 ~r~Lp~iGd~~~lsi~kri~-l~ew---gl~dRe~sv~~a~~d~i 261 (885)
T COG5218 221 ERCLPRIGDLKSLSIDKRIL-LMEW---GLLDREFSVKGALVDAI 261 (885)
T ss_pred HHHhhhhcchhhccccceeh-hhhh---cchhhhhhHHHHHHHHH
Confidence 3555554444444444443 2222 34455555655555543
No 244
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=0.39 Score=44.00 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH---Hhcc
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGF 553 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~---~~~~ 553 (865)
+...++.++..|.+.+-.-|--|-.-+..++...++.+.|.+|+++..+...|...+.++....+.++..+.. .+|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 3455666666666543334444555666777778899999999999999999999998888877777777665 4667
Q ss_pred cCCchhhHhhhhHHHHHHHhc
Q 002921 554 ELNQPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~l~~ 574 (865)
.+. ||+.+++|.+ ..+.+
T Consensus 192 aLV--PfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 192 ALV--PFYRQLLPVL-NTFKN 209 (262)
T ss_pred hhh--hHHHHhhhhh-hhhcc
Confidence 777 8999999865 44443
No 245
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.28 E-value=9.4 Score=43.59 Aligned_cols=139 Identities=13% Similarity=0.067 Sum_probs=83.5
Q ss_pred CCcHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhCcCC-------HhHHHHHHHHHhhhhhCCChhHHHHHHHHHH
Q 002921 47 PDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMS-------PSNQQYIKSELLPCLGAADRHIRSTVGTIVS 118 (865)
Q Consensus 47 p~~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~~-------~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 118 (865)
++.+..++.++.+. ....+.+|..|.+.+-..+.+.-..-+ .+..+.+.+.|-.+..+.+...+..+..+++
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34677777777642 233567888888888777765433221 2233344444444444455555666666666
Q ss_pred HHHHhcCcCChHHHHHHHHHhhc-c--CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC--CC
Q 002921 119 VVVQLGGIAGWLELLQALVTCLD-S--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PH 193 (865)
Q Consensus 119 ~i~~~~~~~~w~~ll~~l~~~l~-~--~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~ 193 (865)
++.. |..++.+...+. + ....+|..|+.+|..+.+..+. .+-+.+++.+.+ .+
T Consensus 472 N~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---------------~v~~~l~~i~~n~~e~ 529 (574)
T smart00638 472 NAGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---------------KVQEVLLPIYLNRAEP 529 (574)
T ss_pred ccCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---------------HHHHHHHHHHcCCCCC
Confidence 5443 444444554444 2 2457899999999888775543 344556666665 47
Q ss_pred HHHHHHHHHHHHHH
Q 002921 194 TSLRKLSLGSVNQF 207 (865)
Q Consensus 194 ~~vr~~a~~~l~~~ 207 (865)
+++|.+|+..+...
T Consensus 530 ~EvRiaA~~~lm~t 543 (574)
T smart00638 530 PEVRMAAVLVLMET 543 (574)
T ss_pred hHHHHHHHHHHHhc
Confidence 79999998877544
No 246
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.25 E-value=1.6 Score=45.41 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhcc----------CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchh
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL----------DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (865)
+..-...+.++.++..+..-.+.+|+..++|.++.++ .+.+..+|.-|+.+++.+++.+... ...
T Consensus 231 l~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-----y~~ 305 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-----YNT 305 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-----CCc
Confidence 5555666666777776666667899999999999877 2356799999999999999988642 344
Q ss_pred hHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILDTN--KRVQEAACSAFAT 505 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~--~~vr~~a~~al~~ 505 (865)
....++..+.+.+.|+. ...+-.|...|..
T Consensus 306 l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 306 LQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 56778888888888763 2335555555543
No 247
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=39 Score=42.42 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=123.7
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC---ChhHHHHHHHHHHHHHHhcCc-
Q 002921 51 NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGI- 126 (865)
Q Consensus 51 ~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~- 126 (865)
..|...+.. ...+.+|++.++.+.+.+.. |..+..-.+-. .+-..+.+. ++.-...+..+++....+.++
T Consensus 54 ~~l~s~~~~--~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 54 QQLISRLTN--GAGPPTRKLISVAIARLISN-GDSFSLYSRLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHcc--CCCchhHHHHHHHHHHHHhc-cchhhHHHHHH---HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 345556653 67889999999999888877 77766544332 222344443 233344455677777766543
Q ss_pred --CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 127 --AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 127 --~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
....+.+..+.+..+......|...+..+....+.++..-..+ .....++-.....+.+.+-.||.++..|+
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~------~~~k~i~l~~k~~lld~s~~v~iaa~rc~ 201 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAAT------ATHKAIRLIAKNSLLDRSFNVKIAAARCL 201 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHH------HHHHHHHHHHhhhhhhhhHHHHHHhHHHH
Confidence 2356777888887777777778888888888887776322111 23355565666666777778999999999
Q ss_pred HHHhccccHHh-HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc
Q 002921 205 NQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (865)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 252 (865)
..+....+..+ ...++..-...+......+..+|....+++..+....
T Consensus 202 ~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 202 KAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred HHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 88876543333 3334444445555566667888888888888877654
No 248
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=92.03 E-value=27 Score=40.14 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHh-------hHHHHHHHh
Q 002921 768 LIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALS-------SLVFMCRAI 840 (865)
Q Consensus 768 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-------~l~~~~~~~ 840 (865)
++++....+.+.-. .+....+.+..++-.+.+.++..++.+++....+++..++...++.+.+ .++.++...
T Consensus 509 ~~~a~~t~~~~~n~-~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~ 587 (947)
T COG5657 509 TREAYSTIFDDWNF-SVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEIN 587 (947)
T ss_pred HHHHHHHHHHhccc-ccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHH
Confidence 45555555544332 2223344567778788888888889999999999999999998865544 444444444
Q ss_pred hccCCCcc-HHHHHHHHHhcCc
Q 002921 841 ASWHVRIT-LHLILLSVIFFGS 861 (865)
Q Consensus 841 ~~~~~~~~-~~~~~~~~~~~~~ 861 (865)
++....|. .+..|..+.++|.
T Consensus 588 ~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 588 AKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred ccCCccHHHHHHHHHHHHHHHH
Confidence 44444444 7777777777664
No 249
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.99 E-value=6.7 Score=42.10 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCC-----cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhc
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD-----EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL 441 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 441 (865)
.|..|...| .. +.-+..++|.+...+..+-. .+...-...+....++..+..-.+.+|+..++|.++.|
T Consensus 223 ~r~eAL~sL---~T---DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTC 296 (576)
T KOG2549|consen 223 LRQEALQSL---ET---DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTC 296 (576)
T ss_pred HHHHHHHhh---cc---CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHh
Confidence 466665554 22 22234445555554443211 11333333444445555555556789999999998887
Q ss_pred cC----------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Q 002921 442 LD----------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEE 509 (865)
Q Consensus 442 l~----------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~ 509 (865)
+- |.++.+|.-|+.++..+++.+... ....-..++..+.+.+.|+ .......|...|..|-..
T Consensus 297 vVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 297 VVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 63 567889999999999999988653 2335567888888888886 345566666666655443
Q ss_pred h-ccchhhhHHHHHHHHHHHhcc
Q 002921 510 A-AEELAPRLEIILQHLMMAFGK 531 (865)
Q Consensus 510 ~-~~~~~~~~~~i~~~l~~~l~~ 531 (865)
. ...+.|.+......+...+..
T Consensus 372 ~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 372 VIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred hhhheeccchHHHHHHhhhhccc
Confidence 2 334455566655555555443
No 250
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.94 E-value=0.28 Score=32.41 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhH
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (865)
.+|.++..++++++.++..|+|++++++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6888999999999999999999999886
No 251
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.89 E-value=8.1 Score=39.96 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhhCc--ch-hh--------hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh----ccH
Q 002921 367 LRKCSAAALDVLSNVFGD--EI-LP--------TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHL 431 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~--~~-~~--------~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~l 431 (865)
+.+....+++.+....+. .. .. ..-|++ ..+..+| +..+..|+..++.+....+.... ..+
T Consensus 73 ~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D---~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 73 TVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRND---SFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SS---HHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCC---HHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 566677777776665542 11 11 233444 4777777 99999999999999887764433 344
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhh-HHHHHHHHHHHH-----cCC--CHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRI-----LDT--NKRVQEAACSAF 503 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l-----~d~--~~~vr~~a~~al 503 (865)
+.++..+...++.++..++..|+.+++.+...- .. ...+ -...++.+...+ .+. ...++..++.++
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~-----R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EY-----RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HH-----HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hh-----HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 445555555455555667788888888776431 10 1111 145555666656 222 345555666555
Q ss_pred HHHH--HHhccchhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCc
Q 002921 504 ATLE--EEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDK 580 (865)
Q Consensus 504 ~~l~--~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 580 (865)
.-+. ....+.+.... +++.+...++.. ++++.+.++.++.+++......+. +..+..=++.+++.+..-.-.|+
T Consensus 223 WlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~-~~mv~~~~l~~l~~L~~rk~~De 299 (312)
T PF03224_consen 223 WLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI-ELMVLCGLLKTLQNLSERKWSDE 299 (312)
T ss_dssp HHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH-HHHHHH-HHHHHHHHHSS--SSH
T ss_pred HHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH-HHHHHccHHHHHHHHhcCCCCCH
Confidence 5332 22222222222 777777777654 557788888888887765543322 12222223344555554433444
Q ss_pred ch
Q 002921 581 DL 582 (865)
Q Consensus 581 ~~ 582 (865)
++
T Consensus 300 dl 301 (312)
T PF03224_consen 300 DL 301 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 252
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=91.72 E-value=6.9 Score=39.96 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (865)
..-++-|...++++.++++.. -...+.+-+.+..|.+..||..|..-|..||..
T Consensus 38 ~k~k~lasq~ip~~fk~fp~l---------a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSL---------ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchh---------hhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 344666778899999988643 356677888888899999999999999988875
No 253
>PF05536 Neurochondrin: Neurochondrin
Probab=91.61 E-value=27 Score=39.17 Aligned_cols=137 Identities=13% Similarity=0.111 Sum_probs=87.2
Q ss_pred hhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccH--HhHHhHHH
Q 002921 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPS--ALFVSMDQ 221 (865)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~--~~~~~~~~ 221 (865)
...+..|+.+|..++. .+.+..+ +.+-.-+|.+++.+.+.+. .+...|+.||..++.+-.. .+.. ..
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~------~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~--~g 140 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASS------PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE--SG 140 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcC------HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh--cC
Confidence 3567778888888887 3444332 3356678999999988776 9999999999999854221 2222 12
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh-h---hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-L---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 222 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~---~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.++.+++.+.+ .+.....++..+..+....... . ...+..+++.+-..+.......+...++++..+...
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 34455555444 3455677888887776654421 1 223445566655555555555677888888887554
No 254
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=46 Score=41.01 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccch
Q 002921 584 PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (865)
Q Consensus 584 ~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (865)
.++.|++..+.+.+.++.|+..+++.. ... .....+-.|+..+..++..+|++..+++++
T Consensus 1523 ~li~~i~~~~~a~~~d~~pl~~k~l~~-------trs-----------s~~~~r~~ai~~~~~l~~~lge~~~~lL~q-- 1582 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDDLKPLNQKILKK-------TRS-----------SSRKARYLAIIQVKLLYTKLGENVIVLLPQ-- 1582 (1621)
T ss_pred HHHHHHHhhccCChhhhHHHHHHHHHH-------hcc-----------ccHHHHHHHHHHHHHHHHHhcchhHHhhhh--
Confidence 455566666655555566665554332 110 022344567888889999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhh
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR 701 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (865)
.+|++...++|.+.+|...+..++..+=...|+.+..|
T Consensus 1583 ~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1583 SIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 99999999999999988777777776666666655544
No 255
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.85 E-value=17 Score=35.36 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQF 207 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~~ 207 (865)
.+-+..+.+.+..++.-.|+.+..+|+++-. +.-+|.+.+.|.+ .++.||..|..+|+.+
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQS------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccc------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 4456667777777777788888777766532 4457777777776 4789999999999988
Q ss_pred hccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002921 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (865)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 248 (865)
..- .-++.|...++|+++-+|..+.-+|...
T Consensus 248 a~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 248 ADE----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred cCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 742 2245555667777777776655555443
No 256
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=90.83 E-value=1 Score=36.22 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=47.4
Q ss_pred ccccHHHHHHHHHHHHHhhhCc---chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002921 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 422 (865)
++|.+|..|..++..++..++. ...+-+...+.+.+.+++ ..+..+++|+.+|..+...
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999975 455677777777777653 2388999999999998643
No 257
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.69 E-value=34 Score=39.60 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHHHHHhc-Cc------------C----ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 105 ADRHIRSTVGTIVSVVVQLG-GI------------A----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~-~~------------~----~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
.++.++..+...++.+++.. .. . .-+.+...+.......+...+..++++|+.+-.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 46678998888888888763 11 1 123344444444455566788888888877632
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 244 (865)
+..++.+...+.+. +..+|..|+.+|..+....|....+.+ ++.+.+. ..+.++|.+|+..
T Consensus 520 -----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I~~n~--~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 520 -----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPIFMNT--TEDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHHHH-T--TS-HHHHHHHHHH
T ss_pred -----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHHhcCC--CCChhHHHHHHHH
Confidence 45677777777765 679999999999988776554443322 3333221 2357788887765
Q ss_pred HH
Q 002921 245 FN 246 (865)
Q Consensus 245 l~ 246 (865)
|.
T Consensus 584 lm 585 (618)
T PF01347_consen 584 LM 585 (618)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 258
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.28 E-value=9.9 Score=33.43 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc------cchhhHHHHHHHHHHHH
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~~~~~~~~~l~~l~ 548 (865)
-...+..+.+.++++++.|+..|...+..+.++||..+...+ ..++..+.+++.. .+..++..+++.+....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999987764332 3566666777743 34467777888888777
Q ss_pred HHhcc
Q 002921 549 DAVGF 553 (865)
Q Consensus 549 ~~~~~ 553 (865)
...+.
T Consensus 116 ~~f~~ 120 (139)
T cd03567 116 LELPH 120 (139)
T ss_pred HHhcc
Confidence 77653
No 259
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=0.85 Score=41.91 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=73.4
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc--
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-- 740 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-- 740 (865)
.++|++...+.+.+..-|-.|-.-+.+++...++.+.|.+++++..+...+... +.++...+...+..++...+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr----d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR----DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhcccc
Confidence 377777777777777777788888899999999999999999999999999887 77888888888888887654
Q ss_pred -ccccchHHHHHHHHH
Q 002921 741 -QEISPIVMTVVLCLV 755 (865)
Q Consensus 741 -~~~~~~~~~il~~l~ 755 (865)
..+.||.-++++.+.
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 667888888777443
No 260
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.19 E-value=1.5 Score=39.37 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh----------------hhhcc
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~----------------~~~~~ 430 (865)
+|.....++..++...-..-.+.+++.+.+.+++ + .......+..|..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-S---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-c---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 5677788888888887555567777777777776 4 67788888888887776542 12233
Q ss_pred HHHHHHHHHhccCCCC----hHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002921 431 LSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (865)
Q Consensus 431 l~~i~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~al 503 (865)
.+.++..+.+.+.... ..+...++.+++.+..+.+.. ... ..+++.+++.+.+++ .+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-------~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-------LIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-------HHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-------HhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 4555555555554322 788888888888888765431 111 347788888886654 477777764
No 261
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.92 E-value=0.68 Score=30.57 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 478 EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 478 ~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
...++.|++.+.++++.|+..|+++|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999886
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.78 E-value=2.2 Score=37.82 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~ 206 (865)
.=.+.+..|.+-+.+.++.+...|+.+|..+++.++..+..++ .-..++..+.+.+.+ .++.|+..++..+..
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------ask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV------ASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH------hhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3367888899999999999999999999999999998765432 237788888888888 688999999999999
Q ss_pred Hhccc
Q 002921 207 FIMLM 211 (865)
Q Consensus 207 ~~~~~ 211 (865)
|....
T Consensus 108 W~~~f 112 (144)
T cd03568 108 WADEF 112 (144)
T ss_pred HHHHh
Confidence 98654
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.61 E-value=13 Score=33.07 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHh
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~ 551 (865)
..-...+..+.+.+.+.++.|+..|...+..+.++||..+...+ ..+++.|.+++.. .+..++..+++.+...+...
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 34468888999999999999999999999999999987664332 3577777777776 45567777888888887776
Q ss_pred cc
Q 002921 552 GF 553 (865)
Q Consensus 552 ~~ 553 (865)
..
T Consensus 113 ~~ 114 (144)
T cd03568 113 KN 114 (144)
T ss_pred CC
Confidence 54
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.19 E-value=4.9 Score=35.22 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC---CCHHHHHHHHHH
Q 002921 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS---PHTSLRKLSLGS 203 (865)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~vr~~a~~~ 203 (865)
..=.+.+..|.+-+.++++.++..|+.+|..+++.++..+..++. -..++..+.+.+.. .++.||..++..
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl~~l~~l~~~~~~~~~~Vk~kil~l 106 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFLLELVKIAKNSPKYDPKVREKALEL 106 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 344678899999999999999999999999999999886643221 13566667777765 478999999999
Q ss_pred HHHHhcccc
Q 002921 204 VNQFIMLMP 212 (865)
Q Consensus 204 l~~~~~~~~ 212 (865)
+..|....+
T Consensus 107 l~~W~~~f~ 115 (133)
T cd03561 107 ILAWSESFG 115 (133)
T ss_pred HHHHHHHhc
Confidence 999987643
No 265
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=43 Score=41.24 Aligned_cols=230 Identities=14% Similarity=0.128 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccC
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (865)
++.-+..+++.+.-.++..+..|...++.+++.. .+...+.++.....+.+++-+.+..++....+.+..+...+++..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666668899999999999998765 333334455555555666777777888899999999999999988
Q ss_pred CchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccch-----HHHHHHHHHHHHHHHHHh-hccccc
Q 002921 556 NQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFA-----QPVFQRCINIIQTQQLAK-VDSVAA 628 (865)
Q Consensus 556 ~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~-----~~i~~~l~~~l~~~~~~~-~~~~~~ 628 (865)
. ||+..++|...-.... .+..+ ..+...+... ..++..+.+ +++...+.+.+......+ .++...
T Consensus 119 s--p~LK~li~~wl~~~~d---~~~~vs~aa~~sf~~~---f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~ 190 (1312)
T KOG0803|consen 119 S--PFLKSLIPPWLGGQFD---LDYPVSEAAKASFKDG---FAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL 190 (1312)
T ss_pred h--HHHHhhhhhhhheecc---cchHHHHHHHHHHHhh---cChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence 7 8999999876433221 12222 2222222221 222222222 223332222222111000 000000
Q ss_pred CCCCCcc-----hhHhhhhhhhHHHHHhhhhhhhh-----cccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhh
Q 002921 629 GAQYDKE-----FVVCCLDLLSGLAEGLGSGIESL-----VAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL 698 (865)
Q Consensus 629 ~~~~~~~-----~~~~al~~l~~l~~~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (865)
..| +.+ +...++-++..+....|..-.-. ...-.--..+...+++..+.++.+.+.++-.++......+
T Consensus 191 s~E-e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 191 SSE-ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred chH-HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 001 111 23355666666665544322111 0000011233445667888899998888888887766553
Q ss_pred HhhHHH-HHHHHHHhcCC
Q 002921 699 QARLSD-FLDIAAKQLNT 715 (865)
Q Consensus 699 ~~~~~~-~l~~l~~~l~~ 715 (865)
.+.-.. +-+.+...+++
T Consensus 270 ~~~~~~~l~~~~~~~~~~ 287 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDS 287 (1312)
T ss_pred chhhhhHhhHHHHccccc
Confidence 333333 34444444444
No 266
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.67 E-value=21 Score=33.50 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
..+++.+.+.+.+++..+|..|+.++..+.+..-- + + ...+|.+..+..|+++.+|..|...+..+.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv---n-------P--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV---N-------P--KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC---C-------h--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999888874211 1 1 5679999999999999999999999999987
Q ss_pred cccHHhHHhH
Q 002921 210 LMPSALFVSM 219 (865)
Q Consensus 210 ~~~~~~~~~~ 219 (865)
..++-+...+
T Consensus 75 K~~s~v~~~~ 84 (187)
T PF12830_consen 75 KHESLVESRY 84 (187)
T ss_pred HhHHHHHHHH
Confidence 7655554443
No 267
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.59 E-value=2.5 Score=37.38 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQ 206 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~ 206 (865)
.=.+.+..|.+-+.+.++.+...|+.+|..+++.++..+..++ .-..++..+.+.+. ..++.|+..++..+..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev------as~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 111 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV------ASREFMDELKDLIKTTKNEEVRQKILELIQA 111 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH------hhHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3357888899999999999999999999999999988664432 23677777777776 4688999999999999
Q ss_pred Hhccc
Q 002921 207 FIMLM 211 (865)
Q Consensus 207 ~~~~~ 211 (865)
|....
T Consensus 112 W~~~f 116 (142)
T cd03569 112 WALAF 116 (142)
T ss_pred HHHHh
Confidence 98764
No 268
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=70 Score=39.00 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=78.7
Q ss_pred HHHHHHhcCCCCCcc-h-hhHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhh
Q 002921 567 PLIAKWQQLPNSDKD-L-FPLLECFTSIAQALGAGFTQ--FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLD 642 (865)
Q Consensus 567 ~l~~~l~~~~~~~~~-~-~~~~~~l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~ 642 (865)
.++..+.+..++++. + ..++.++=.+..+.|..+.+ +..-++..+++.|....-.. ..+..+++...+.-+++.-
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~-~~ewngkeiqkqwtet~~l 1075 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN-VSEWNGKEIQKQWTETSCL 1075 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc-hhhhcchhHhhhhhhhhhh
Confidence 445555554434432 3 46778888888888888777 44555566666666221100 0011111111223345677
Q ss_pred hhhHHHHHhhhhhhhhccc-------chHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002921 643 LLSGLAEGLGSGIESLVAQ-------SNLRDMLLQCCMDDASDVRQSAFALLGDLARV 693 (865)
Q Consensus 643 ~l~~l~~~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 693 (865)
.++.+++.+.++|..+..- ..++.++.....+.++++..+|+.++-++...
T Consensus 1076 tisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1076 TISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 8888998888887765432 45888888888899999999999988877664
No 269
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.22 E-value=48 Score=36.97 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhc-CCCcH----HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC--cCCH---hHHHHHHHHHhhhhh
Q 002921 34 SQIWQQLQQYSQ-FPDFN----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSP---SNQQYIKSELLPCLG 103 (865)
Q Consensus 34 ~~a~~~L~~~~~-~p~~~----~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~--~~~~---~~~~~i~~~ll~~l~ 103 (865)
|+.-..|..+.. .|+.. ..+..+|- +.+-..|-.-.-...|.+.+.-. ++.+ +..+.+...+.+.+.
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLd---ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~ 356 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLD---SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLS 356 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhh
Confidence 344445555544 45542 22333332 44556665555555555543221 1222 122334445555667
Q ss_pred CCChhHHHHHHHHHHHHHHhc--CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 104 AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
+..+.+|.++.+++..|+... +++.-.++.......+++....+|..|+.+++.+.-..+.
T Consensus 357 D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 357 DTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred ccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 889999999999999999874 5667788999999999999999999999999998876553
No 270
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=87.92 E-value=51 Score=36.99 Aligned_cols=376 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhhhhC-CChhHHHHHHHHHHHHHHhc--------CcCChHHHHHHHHHhhcc--CChhHHhHHHHHHH
Q 002921 88 PSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG--------GIAGWLELLQALVTCLDS--NDINHMEGAMDALS 156 (865)
Q Consensus 88 ~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~--------~~~~w~~ll~~l~~~l~~--~~~~~r~~al~~L~ 156 (865)
++..+.+++.---.... .+..++.+.|+++..|..-- ....|.+.+..+...+.+ ..+.....++-...
T Consensus 125 e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t 204 (552)
T PF14222_consen 125 EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVT 204 (552)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHH
Q ss_pred HHHhhchhhcccCCCCCCCcchh-hhHHHHHHHhcCCCHHHHHHHHHHHHHHh-ccc-------cHHhHHhHHHHHHHHH
Q 002921 157 KICEDIPQVLDSDVPGLAECPIN-IFLPRLLQFFQSPHTSLRKLSLGSVNQFI-MLM-------PSALFVSMDQYLQGLF 227 (865)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~a~~~l~~~~-~~~-------~~~~~~~~~~~l~~l~ 227 (865)
.+.-..+.++-. ..+. .++..+...++|. ..|..++.++..++ .++ +......++.++..++
T Consensus 205 ~lLCvS~~e~F~-------~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lf 275 (552)
T PF14222_consen 205 TLLCVSPKEFFL-------SNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLF 275 (552)
T ss_pred HHHhcCcHHHHH-------HHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHc
Q ss_pred HhhCCC----CHHHHHHHHHHHHHHHhhchhhh-hhhHHHHHHHHhhhc--CCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002921 228 LLSNDP----SAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENLK 300 (865)
Q Consensus 228 ~~~~~~----~~~~r~~~~~~l~~l~~~~~~~~-~~~l~~l~~~l~~~~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (865)
..-+.. |.......++.+..++...+++. +..+-+++..-.... ..-++|-...++.++..+...-...+.-+
T Consensus 276 p~~kk~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~ 355 (552)
T PF14222_consen 276 PKGKKGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPP 355 (552)
T ss_pred cCCCCcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCC
Q ss_pred hhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 002921 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (865)
Q Consensus 301 ~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (865)
+..+...+.....-.......+............+.-+-+ +++.-...+..+-.
T Consensus 356 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------------------~~~~l~~il~~cD~ 409 (552)
T PF14222_consen 356 PPPPTSDPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEE--------------------------FCRALGKILRLCDN 409 (552)
T ss_pred CCCCcCCCCCcccccccCcccccccchhhccccHHHHHHH--------------------------HHHHHHHHHHHHHH
Q ss_pred hhCcchhhhhHHHHHH----------hhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH--HHHHHHhccCCCChH
Q 002921 381 VFGDEILPTLMPVIQA----------KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPL 448 (865)
Q Consensus 381 ~~~~~~~~~~~~~l~~----------~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~ 448 (865)
.+|...+..--..... ...++. .......+..+..+.+..+..+...++. ++..+....-+.++.
T Consensus 410 ~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~---~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~ 486 (552)
T PF14222_consen 410 TFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDM---VTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPN 486 (552)
T ss_pred HhchhhccCcccccCCCCCCcccccccccccc---cccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHH
Q ss_pred HHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHH----------HHHHHHHHHHHHH
Q 002921 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV----------QEAACSAFATLEE 508 (865)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~v----------r~~a~~al~~l~~ 508 (865)
|+.+|..+|.+++...+ . ....+..+...+++ +.|..+.. -+........+++
T Consensus 487 I~~~A~~aLk~la~~~p-~-----~~~vi~~Fa~Fif~-~~d~~~~~~~~~~l~~~~~~~~L~lyveLL~ 549 (552)
T PF14222_consen 487 IRESAAQALKRLARDKP-N-----RQQVITGFARFIFR-FDDKYPSMYDGGYLGSGEIESLLKLYVELLE 549 (552)
T ss_pred HHHHHHHHHHHHHHcCC-C-----HHHHHHHHHHHHee-CcccCccchhhhccchHHHHHHHHHHHHHHH
No 271
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=87.73 E-value=61 Score=37.68 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHh
Q 002921 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQ 712 (865)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~ 712 (865)
+.+..+|-.+...+.+++.+|....---+-.++..+.+.
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhc
Confidence 467789999999999999998744322333445555444
No 272
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=87.52 E-value=18 Score=32.63 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH-hhchhhhHhhHHHHHHHHHHhcCCCC
Q 002921 681 QSAFALLGDLA-RVCPVHLQARLSDFLDIAAKQLNTPK 717 (865)
Q Consensus 681 ~~a~~~l~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (865)
..|+..+-++. ..+++.+.|++..+++.+.+.|.++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 56888888887 66778889999999999999999873
No 273
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.41 E-value=6.3 Score=34.64 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC------CCHHHHHHHHH
Q 002921 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLG 202 (865)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~vr~~a~~ 202 (865)
=.+.+..|.+-++++++.+...|+.+|..+++.|+..+..++ ....++..+.+.+.. ++..|+..++.
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------as~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV------GKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------HhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999998765432 236677777777753 57899999999
Q ss_pred HHHHHhccc
Q 002921 203 SVNQFIMLM 211 (865)
Q Consensus 203 ~l~~~~~~~ 211 (865)
.+..|....
T Consensus 110 li~~W~~~f 118 (139)
T cd03567 110 LLYSWTLEL 118 (139)
T ss_pred HHHHHHHHh
Confidence 999998654
No 274
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=87.06 E-value=13 Score=35.88 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhh-CCChhHH
Q 002921 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIR 110 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~-~~~~~vr 110 (865)
.|+-|.....+.....+....+..+.. +...+.|..|+.++...... .+.+.. ..+-..+. -.+..+.
T Consensus 35 lr~lak~~~~~~~~~~~~~~l~~~L~~---~~~~E~~~la~~il~~~~~~----~~~~~~----~~~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 35 LRKLAKDIYKELKLSEELYELADELWE---SGYREERYLALLILDKRRKK----LTEEDL----ELLEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHCTSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHCGGG------HHHH----HHHHHCCCCCCCHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHcC---CchHHHHHHHHHHhHHHhhh----hhHHHH----HHHHHHhccCCcchhh
Confidence 455555555555444223334444444 45688999998887543321 222212 22222232 2456666
Q ss_pred HHH-HHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh
Q 002921 111 STV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (865)
Q Consensus 111 ~~~-a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (865)
..+ ..+++.+.... +.+.+.+.+.+.|+++-.|..|+.++...... ...+.++..+...+
T Consensus 104 D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHc
Confidence 665 44556554432 77889999999999999888887766443333 12467787888888
Q ss_pred cCCCHHHHHHHHHHHHHHhccccHHhHHhH
Q 002921 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (865)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (865)
.|++.-||.+...+|..+....|+...+.+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999999999887665554443
No 275
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.96 E-value=2.9 Score=35.18 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHhcc-CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 434 IVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 434 i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
++..++..+ .+.++.+-..||.=+|+++++.+. ....+ -..-..+++.|.++++.||..|..|+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555566666 334677888899999999999864 22222 2344566778889999999999999987764
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.62 E-value=9.5 Score=33.41 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILD---TNKRVQEAACSAFATLE 507 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d---~~~~vr~~a~~al~~l~ 507 (865)
...+..+.+.+++++|.++..|+..+..+.+.+... ....+. ...+..+.+.+.. .++.||..+...+..+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~----f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP----FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH----HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 446778888999999999999999999999887642 122222 2555566666654 37899999999999888
Q ss_pred HHhcc--chhhhHHHHHHH
Q 002921 508 EEAAE--ELAPRLEIILQH 524 (865)
Q Consensus 508 ~~~~~--~~~~~~~~i~~~ 524 (865)
...+. .-.+++..+...
T Consensus 112 ~~f~~~~~~~~~~~~~y~~ 130 (133)
T cd03561 112 ESFGGHSEDLPGIEDAYKL 130 (133)
T ss_pred HHhcCCCccchHHHHHHHH
Confidence 87654 233444444443
No 277
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.47 E-value=46 Score=34.92 Aligned_cols=198 Identities=16% Similarity=0.069 Sum_probs=103.9
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHH----hcC
Q 002921 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ----LGG 125 (865)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~----~~~ 125 (865)
...+...+.. +..+.....+...|-..+.+. +.+.-+.+.+.+..++.+..+.+|+.....++.+.. ...
T Consensus 24 ~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 24 VQGLSPLLSK--ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 4455555543 566666666665554444443 344445566777889999988899999999999987 222
Q ss_pred cCChHHHHHHHHHhh----ccCChhHH----hHHHHHHHHHHhhchhhccc--CCCC-C-CC-cchhhhHHHHHHHhcCC
Q 002921 126 IAGWLELLQALVTCL----DSNDINHM----EGAMDALSKICEDIPQVLDS--DVPG-L-AE-CPINIFLPRLLQFFQSP 192 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l----~~~~~~~r----~~al~~L~~l~~~~~~~~~~--~~~~-~-~~-~~~~~l~~~l~~~l~~~ 192 (865)
......++|.+.+.+ .++-+... .++..++. +.......... .... + .+ ...--+-+.++.-+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 334445555555555 44433222 22332332 10000000000 0000 0 00 00001222333332 2
Q ss_pred CHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhchhhh
Q 002921 193 HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
+.+...-.+.++..+....+....+. ...+-..++..+.++ ..++|+.+...+..+....+..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l 241 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL 241 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence 33334445556655555443333222 244555666655555 78999999999999988887753
No 278
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=97 Score=38.44 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCC
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (865)
+.++...++....+.+...|-.|...+..+.+..++...+.+++++|.+..++.+.+..+-..+...+..+-...|+.+.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 66777777777778888999999999999999999999999999999999999988777766666667766677776543
No 279
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=86.20 E-value=46 Score=34.72 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=98.1
Q ss_pred ChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCC-CcchhhhHHHHHHHhcCC-------------
Q 002921 128 GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLA-ECPINIFLPRLLQFFQSP------------- 192 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~l~~~------------- 192 (865)
.|...+..+.++++.+ +|.+-.-.+.-| +.++.+. .++ ...++.+...+.+.+.|.
T Consensus 138 ~is~~~~~il~~L~~e~dWeV~s~VL~hL-------p~qL~Nk--~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~ 208 (356)
T PF03542_consen 138 PISEWFSVILQCLEHETDWEVYSYVLVHL-------PSQLSNK--ALFLGADIDQLRNALCSMICDRSFLESLSNKPTGF 208 (356)
T ss_pred eHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HHHhhhh--HHhccCcHHHHHHHHHHHHhcccccccccCCCCCC
Confidence 4567777888888654 665543333222 2222211 011 011455555555554431
Q ss_pred -CHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhc
Q 002921 193 -HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (865)
Q Consensus 193 -~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~ 271 (865)
..++......+|..++.+....-...-+.++..+...+.+ ...+.++.+|.--+-..|+.+...++.++..+.+..
T Consensus 209 ~~~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~ 285 (356)
T PF03542_consen 209 KRADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIS 285 (356)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 2467777788888887653211111223455555555543 233456666666666678888888888887776555
Q ss_pred CCCCHHHHHHHHHHHHHhhccC-Cch-hhHHhhhhhHHHHHHhhcc
Q 002921 272 KDTDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (865)
Q Consensus 272 ~~~~~~v~~~a~~~l~~l~~~~-~~~-~~~~~~~~~l~~~ll~~l~ 315 (865)
... .+....+||+..++..+ ... +.....+..++.+++++..
T Consensus 286 tt~--~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 286 TTP--NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred cch--hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 433 35667899999998875 332 2233445566777766654
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.19 E-value=23 Score=31.34 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHhc
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~ 552 (865)
.-...+..+-+.+.++++.|+..|...+..++++|+..+...+ ..+++.|.+++.+ .+..++..+++.+...+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999999999987654322 3566666666653 344566777888887777665
Q ss_pred cc
Q 002921 553 FE 554 (865)
Q Consensus 553 ~~ 554 (865)
..
T Consensus 118 ~~ 119 (142)
T cd03569 118 NK 119 (142)
T ss_pred CC
Confidence 43
No 281
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=86.12 E-value=21 Score=33.76 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=46.8
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchh
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV 696 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 696 (865)
..++.+++.+...+|....+++.. ++..+...-.+.+...|..+-.++|..++.+|.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~--~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKP--ILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHH--HHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 357888999999999888777765 777777777777788899999999999999984
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=86.09 E-value=17 Score=41.76 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHH-HHHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 002921 745 PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHME-HFMQPWCIALSMIRDDTEKEDAFRGLCAMVK 823 (865)
Q Consensus 745 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 823 (865)
|+-..++..+-..+.++ ..|-.++..||.++..+|..+-..+. .+++.++..|....+...--.|+.+|+.++.
T Consensus 66 P~~K~~~~~l~~~~~~~-----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP-----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ccHHHHHHHHHHHHcCc-----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 66677788888877765 36778889999999988876554443 5788888888776666677789999999999
Q ss_pred hCchhhHhhHHHHHHHhhcc
Q 002921 824 ANPSGALSSLVFMCRAIASW 843 (865)
Q Consensus 824 ~~~~~~~~~l~~~~~~~~~~ 843 (865)
+-|..+.++|+.++.++...
T Consensus 141 ~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 141 HIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred cccchhhHHHHHHHHHHHHH
Confidence 99999999999999888653
No 283
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=86.08 E-value=12 Score=34.47 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=74.9
Q ss_pred hhHHhHHHHHHHHHHhhchhhcccCC--CCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHH
Q 002921 145 INHMEGAMDALSKICEDIPQVLDSDV--PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (865)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 222 (865)
...|..++.++..+.+..+..+.+.- +.+..-....+.+.+++.+.++++.+-..++.++..+.......+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677889999999998888775320 1111223466777788888777788888999999999877666666667777
Q ss_pred HHHHHH-hhCCC--CHHHHHHHHHHHHHHHhh
Q 002921 223 LQGLFL-LSNDP--SAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 223 l~~l~~-~~~~~--~~~~r~~~~~~l~~l~~~ 251 (865)
++.++. .+..+ ...-|..+++++..+++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 777766 44432 235667788899888863
No 284
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.74 E-value=5.3 Score=31.71 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~ 287 (865)
...+.++|...+.|+..++...++.++.-++.++..+.....+.++++...|++.+.
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345789999999999999999999998889999998888888888888888888754
No 285
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.21 E-value=43 Score=38.66 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHhcCchhhhhhHHHHHHHHHHh
Q 002921 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM-TVVLCLVPILKHSEELNKSLIENSAITLGR 778 (865)
Q Consensus 700 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (865)
|+-..++..+...+... ..|-.++..||.++...+..+-..+. .++..|++.|.-.. ...+...++.+|.-
T Consensus 66 P~~K~~~~~l~~~~~~~------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~--~~~~~~~al~~Lim 137 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT--SITVVSSALLVLIM 137 (668)
T ss_pred ccHHHHHHHHHHHHcCc------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc--cHHHHHHHHHHHHH
Confidence 66667777777777755 67889999999999887755433222 35666777665443 34566778888888
Q ss_pred hhhhCCCcccccHHHHHHHHHHHhc-cCC---Ch------HHHHHHHHHHHHHHhhCchhhHhhHHH
Q 002921 779 LAWVCPELVSPHMEHFMQPWCIALS-MIR---DD------TEKEDAFRGLCAMVKANPSGALSSLVF 835 (865)
Q Consensus 779 l~~~~~~~~~~~~~~~l~~~~~~l~-~~~---~~------~~~~~~~~~l~~l~~~~~~~~~~~l~~ 835 (865)
++-..|..+.+|++.++..+...+. ... .. .-....+..+.-|++.+|..+..++..
T Consensus 138 lLP~ip~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~ 204 (668)
T PF04388_consen 138 LLPHIPSSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQ 204 (668)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHHH
Confidence 8878888899999999998877662 211 11 111223334455566799877777663
No 286
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=84.93 E-value=2.3 Score=33.91 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc-HHHHHHHHH
Q 002921 809 TEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT-LHLILLSVI 857 (865)
Q Consensus 809 ~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 857 (865)
-.|-.++.||+.++...|-.+.+++|.++..++.+.++|+ +...+++-+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl 53 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQPIRTTVKKTL 53 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-SSHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3567899999999999999999999999999999999887 666666543
No 287
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=84.68 E-value=21 Score=33.69 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhccc
Q 002921 491 TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (865)
Q Consensus 491 ~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (865)
.....-..+...++.+.+.++....|++.+++..+.+.-.+.+...+..+-.+++..++++|++
T Consensus 12 ~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 12 RYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 3455666777788888888888888899999998888877777667778889999999999986
No 288
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.42 E-value=27 Score=30.52 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccch-h-hHHHHHHHHHHHHHH
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R-NLRIVYDAIGTLADA 550 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~-~-~~~~~~~~l~~l~~~ 550 (865)
..-...+..+-+.+.++++.++..|...+..++++|+..+...+ ..+++.|.+++..... + ++..+++.+......
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999999999987764332 3467777777766433 3 666778888777776
Q ss_pred hcc
Q 002921 551 VGF 553 (865)
Q Consensus 551 ~~~ 553 (865)
...
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 654
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.01 E-value=30 Score=30.63 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccch-h---hHHHHHHHHHHH
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R---NLRIVYDAIGTL 547 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~-~---~~~~~~~~l~~l 547 (865)
...-...+..+-+.|.++++.++..|...+..++++++..+...+ ..++..|.+++.+... . ++..+++.+...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 445578889999999999999999999999999999987764433 3566777776665433 2 677888888888
Q ss_pred HHHhcc
Q 002921 548 ADAVGF 553 (865)
Q Consensus 548 ~~~~~~ 553 (865)
....+.
T Consensus 117 ~~~f~~ 122 (140)
T PF00790_consen 117 AEAFKS 122 (140)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 877744
No 290
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=83.92 E-value=2.6 Score=33.60 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
-..|++++.+|++++...+-.+-++++.++..+....+| ...++..+-.++++|-+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 467999999999999999988888999999998888887 567888888888887664
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.60 E-value=1.8 Score=28.69 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=23.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
+.+...+.+.+.|+++.||.+|++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 68888999999999999999998753
No 292
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.51 E-value=22 Score=34.05 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhchhhhHhhH--HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 663 NLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 663 ~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.+.|++....++ +.+..|..+++.||.++++....+..|+ .+++|.+++..... ....+..|..-++.+..
T Consensus 124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G----SelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG----SELSKTVATFILQKILL 197 (293)
T ss_pred hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc----cHHHHHHHHHHHHHHhh
Confidence 466776665555 4567899999999999999887777776 46999999988876 55667777787877764
No 293
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.45 E-value=12 Score=33.24 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC-CH-H--HHHHHHH
Q 002921 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HT-S--LRKLSLG 202 (865)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~-~--vr~~a~~ 202 (865)
..-.+.+..|.+.+.++++.+...|+.+|..+++.++..+..++. -..++..+.+.+.+. .. . ||..++.
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~------~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA------SKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT------SHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh------HHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 344678889999999999999999999999999999886644321 256778888877653 33 3 9999999
Q ss_pred HHHHHhccc
Q 002921 203 SVNQFIMLM 211 (865)
Q Consensus 203 ~l~~~~~~~ 211 (865)
.+..|....
T Consensus 112 ll~~W~~~f 120 (140)
T PF00790_consen 112 LLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998664
No 294
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=83.39 E-value=5.3 Score=31.69 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc---HHHHHHH
Q 002921 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT---LHLILLS 855 (865)
Q Consensus 791 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~ 855 (865)
-..++.++...+....+.+.|+..++++.+++......+.++++.++.++-...+.++ ++.-|+.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567888888877777889999999999999999999999999999999988888653 5555543
No 295
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.15 E-value=79 Score=34.86 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhC-CChhHHHHHHHHHHHHHHhcCcC---ChHHHHHHHHHh
Q 002921 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIA---GWLELLQALVTC 139 (865)
Q Consensus 64 ~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~---~w~~ll~~l~~~ 139 (865)
+...|..|+.-|+..+.++ +.+....|-...-.++.. .+...|+.+...+..+++..... .-..++..+...
T Consensus 3 ~l~~R~~a~~~l~~~i~~~----~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~ 78 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKY----PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDP 78 (464)
T ss_pred CHHHHHHHHHHHHHHHHhC----CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcC
Confidence 4577888998888887763 234555555555555543 36779999999999999875321 112233334222
Q ss_pred hccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC---------------------------C
Q 002921 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS---------------------------P 192 (865)
Q Consensus 140 l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---------------------------~ 192 (865)
-.+++-..|..++..| .+...+ +.. ...++.|.+...+.. .
T Consensus 79 ~~~~d~~~~l~aL~~L---T~~Grd-i~~--------~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 146 (464)
T PF11864_consen 79 SNDDDFDLRLEALIAL---TDNGRD-IDF--------FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDN 146 (464)
T ss_pred CCchhHHHHHHHHHHH---HcCCcC-chh--------cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 1122224444444444 443222 110 113333433333321 0
Q ss_pred CHHHHHHHHHHHHHHhccccHHhH-HhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhh
Q 002921 193 HTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~ 270 (865)
+...-...+..+.+++++....+. ..+..++..++..... .++..-+.++..|..++. ++..-...+..++..+...
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhH
Confidence 112223344555555554322222 2344556656555332 233344667777777765 2322234556666665555
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCC
Q 002921 271 NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (865)
Q Consensus 271 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 350 (865)
.... +....+.+.+..+++.... ...+..+...|...+..
T Consensus 226 ~~~~--~l~~~~w~~m~nL~~S~~g--------~~~i~~L~~iL~~~~~~------------------------------ 265 (464)
T PF11864_consen 226 VNSV--SLCKPSWRTMRNLLKSHLG--------HSAIRTLCDILRSPDPQ------------------------------ 265 (464)
T ss_pred hccc--ccchhHHHHHHHHHcCccH--------HHHHHHHHHHHcccCcc------------------------------
Confidence 3322 3445555566555544211 22233333333211100
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhhCcch-----hhh--hHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002921 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI-----LPT--LMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (865)
Q Consensus 351 ~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~-----~~~--~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (865)
. ....++-+.|...++.+.-..|+.- ... +++.+...++..+ ..+-...+..+..+.
T Consensus 266 ------~----~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~---~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 266 ------N----KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS---PRVDYEILLLINRLL 329 (464)
T ss_pred ------c----cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC---CeehHHHHHHHHHHH
Confidence 0 0112355678888888777664422 223 7888888888766 555555555555555
No 296
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.93 E-value=54 Score=32.80 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=69.1
Q ss_pred HHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002921 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (865)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (865)
-+...+.+.+ +.+|.+|+.-+..+.......+..+-...++.+.+.++++.+ ..-|..++.+++....-
T Consensus 7 elv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l------ 75 (353)
T KOG2973|consen 7 ELVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL------ 75 (353)
T ss_pred HHHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH------
Confidence 3445666777 899999987776665543344455556678888899988877 44456777777765431
Q ss_pred chhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 473 ~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
....+..++..++..+.|+........|..+.++.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 233444466667777777755566667777777664
No 297
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.92 E-value=1.3e+02 Score=37.02 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHHHHHHHHhcC---cCChHHHHHHHHHhhccC---ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcc
Q 002921 104 AADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~---~~~w~~ll~~l~~~l~~~---~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (865)
.+...+|...-.++-.|....+ -..|+.+++.+-...... .......++.+|.-++.++-..+- ...
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp-------~sc 925 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP-------TSC 925 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC-------hHH
Confidence 4555666666677877777653 234999999888776655 446677788888888887654432 133
Q ss_pred hhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhh
Q 002921 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 178 ~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
+..++..+...-.. .|..+-..|+..+..+..++ ...+ + ..++........+.+.. +...+..
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl----~~km-------~---S~sed~~~~~~~e~~~s--s~~~~~~ 989 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFL----KNKM-------F---STSEDSCAYNSVEDLYS--SMKSKEI 989 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH----Hhhh-------h---ccchhhhhhcchhhhcc--cccchhh
Confidence 45555555555433 46666667777766665542 1111 1 11111111122222221 1111111
Q ss_pred --hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 257 --EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 257 --~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
...+--++..+.....|...+||..|+..+..+...
T Consensus 990 l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~S 1027 (1610)
T KOG1848|consen 990 LPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNS 1027 (1610)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhh
Confidence 111223444455667788899999999987776554
No 298
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.75 E-value=42 Score=34.94 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHH
Q 002921 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (865)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (865)
...+..+..++..|... -+..+...+++..+.....+++.|..++..-+..+..++-. .++--.+.+-
T Consensus 40 ~~~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~----~fd~~~~~l~ 107 (330)
T PF11707_consen 40 LSFQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLR----SFDFSLKSLP 107 (330)
T ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchhhHH
Confidence 33555555555555542 17788888888888777899999999998444322221111 1122223333
Q ss_pred HHhcC-----CC--------HHHHHHHHHHHHHHhccccHHhHHh-H--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 002921 187 QFFQS-----PH--------TSLRKLSLGSVNQFIMLMPSALFVS-M--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (865)
Q Consensus 187 ~~l~~-----~~--------~~vr~~a~~~l~~~~~~~~~~~~~~-~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 250 (865)
+++.- .. +.+|...++.+.+++...+...... + ..++..++..+...+.++....+++|..-+-
T Consensus 108 kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 108 KLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVL 187 (330)
T ss_pred HHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence 33321 11 2899999999999998766544332 2 1346777776665556666667777764332
Q ss_pred hchhhhhhh------HHHHHHHHhhhcCCCCH----HHHHHHHHHHHHhhcc
Q 002921 251 VRPSFLEPH------LRNLFEYMLQVNKDTDD----DVALEACEFWHSYFEA 292 (865)
Q Consensus 251 ~~~~~~~~~------l~~l~~~l~~~~~~~~~----~v~~~a~~~l~~l~~~ 292 (865)
..+ .+... -+..+..+.......++ .++..+-+|+..+|..
T Consensus 188 ~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 188 KDS-SVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred cCC-CCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 221 11111 12233333333333333 6777778887777655
No 299
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.74 E-value=3.2 Score=37.57 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH--HHHHHHHHhccC-
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD- 443 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~- 443 (865)
+|..+.-++.++.+..++.+...+..++...+..++ ....-.++.++..+..+.++.....+ +.+++.+.+...
T Consensus 21 ~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 799999999888776777777777788887776655 45566677777777666654332211 235555666665
Q ss_pred -CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHH-HHHHHHHHHHH
Q 002921 444 -DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (865)
Q Consensus 444 -d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~-vr~~a~~al~~ 505 (865)
.++..+..+++.+++.-+..-. ...-.....++.|-+..+ +++.. +|..|+-.|..
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5677888888888875443211 112234455566666664 44555 77777766643
No 300
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.29 E-value=53 Score=32.21 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=100.6
Q ss_pred hCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhH
Q 002921 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (865)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (865)
+..++......-..+..++.+.. ..-+.++..+..+...+....+..+++.+..+.+.-+.. .+.+-
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~------------f~~L~ 77 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH------------FPFLQ 77 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH------------HHHHH
Confidence 45688888888889999998875 667788888888887777666666677776666543221 12222
Q ss_pred HHHHH----H---hcC--CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhc
Q 002921 183 PRLLQ----F---FQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVR 252 (865)
Q Consensus 183 ~~l~~----~---l~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~ 252 (865)
+.+.. . ..+ ...+...+...++..++...|+ +...+++.+...+ ++.++..+..+++.+..+++..
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22221 0 111 2335555556677788877666 4445556666666 6667778888999999988654
Q ss_pred hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 253 ~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
--.+...+.-+.+.+ -.+..+.+....++++.-+
T Consensus 154 vvd~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 154 VVDFYSAWKVLQKKL---SLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred hccHHHHHHHHHHhc---CCccchHHHHHHHHHHHHh
Confidence 333334444444433 2334455555444544444
No 301
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.00 E-value=74 Score=33.70 Aligned_cols=214 Identities=12% Similarity=0.125 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHH-----HHhhhhh-C-CChhHHHHHHHHHHHHHHhc-CcCCh-HHHH
Q 002921 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLG-A-ADRHIRSTVGTIVSVVVQLG-GIAGW-LELL 133 (865)
Q Consensus 63 ~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~-----~ll~~l~-~-~~~~vr~~~a~~l~~i~~~~-~~~~w-~~ll 133 (865)
.+.++|..|-..+|..+... +....+.+ .+...|. + ....-|.++-..+..+.... ++... ..++
T Consensus 37 ~~~~vraa~yRilRy~i~d~------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vv 110 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLISDE------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVV 110 (371)
T ss_pred CcHHHHHHHHHHHHHHHcCH------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHH
Confidence 34899999999998777542 22222222 2222332 2 34557899999999998873 33344 4688
Q ss_pred HHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH
Q 002921 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (865)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~ 213 (865)
..+.....+++...|..++.+|.+++-..++.... ..=+..+.+.+.++..++-...+.++-.++..-..
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P~lv~~----------~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNPELVAE----------CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH----------cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 88999999988899999999999988776664322 12246667777776666666677777777654221
Q ss_pred H--hHH--hHHHHHHHHHHhh---CCCCH--HHHHHHHHHHHHHHhhchhhhhhhHH--HHHHHHhhhcCCCCHHHHHHH
Q 002921 214 A--LFV--SMDQYLQGLFLLS---NDPSA--EVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEA 282 (865)
Q Consensus 214 ~--~~~--~~~~~l~~l~~~~---~~~~~--~~r~~~~~~l~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~v~~~a 282 (865)
. +.. .++.++..+...- ...+. +.-..+..++..+.+..+..+.--.+ .-+..++..+..+.+++|...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 1 111 1222232222220 11122 23344566667777665544311000 234444455666777788888
Q ss_pred HHHHHHhhcc
Q 002921 283 CEFWHSYFEA 292 (865)
Q Consensus 283 ~~~l~~l~~~ 292 (865)
++.+..+..-
T Consensus 261 ldll~dllri 270 (371)
T PF14664_consen 261 LDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHCC
Confidence 8887776554
No 302
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=88 Score=38.99 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=123.6
Q ss_pred CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc
Q 002921 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (865)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~ 126 (865)
-+|....-.+... +.+.++|-+...+....++..|.. |...+-..=.+.+..+-...-..+..+....+.
T Consensus 1035 ~~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~--------if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~ 1104 (1514)
T KOG0929|consen 1035 KDFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKN--------IFKIFTTAASDSSKNIVELAFETVSKILQELFE 1104 (1514)
T ss_pred HhhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhH--------HHHHHHHhhccchhhHHHHhHHHHHHHHHHhhh
Confidence 3454444555543 677889988888888777877863 111111111234444545555555555554333
Q ss_pred CC-------hHHHHHHHHHhhcc-CChhHHhHHHHHHHHHHhhchhh-cccCCC----CCCCcchhhhHHHH---HHHhc
Q 002921 127 AG-------WLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-LDSDVP----GLAECPINIFLPRL---LQFFQ 190 (865)
Q Consensus 127 ~~-------w~~ll~~l~~~l~~-~~~~~r~~al~~L~~l~~~~~~~-~~~~~~----~~~~~~~~~l~~~l---~~~l~ 190 (865)
.. +.+.+..+.....+ ..+..-..++..+...+..+.+. ...... ...+.....-+|.+ -....
T Consensus 1105 ~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~ 1184 (1514)
T KOG0929|consen 1105 NVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIIN 1184 (1514)
T ss_pred hhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhh
Confidence 32 33444444444432 23344444554444444333322 000000 00011112223333 33344
Q ss_pred CCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhC---CC-CH--------HHHHHHHHHHHHHHhhchhhhh
Q 002921 191 SPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSN---DP-SA--------EVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~---~~-~~--------~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
+....+|..+++.+..+....++.+.+.+ ..+...++...+ .+ +. ..-..|++.+..+...+.+.+.
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~ 1264 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN 1264 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999876555444332 233333333322 11 11 1223455666666666666666
Q ss_pred hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 258 ~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
..++.++..+..+...++..+.....+++..++..
T Consensus 1265 ~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1265 NLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 67777777777777777777777777777776554
No 303
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.21 E-value=61 Score=32.26 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCch------hhHhhhhHHHHHHHhcCCC--CCcchhhHHH
Q 002921 516 PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP------VYLDILMPPLIAKWQQLPN--SDKDLFPLLE 587 (865)
Q Consensus 516 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~ 587 (865)
.-++.+-+-+.+-+.+.... ...++.+..++........++ -.+-..+|.++..+.+... .+.....+.+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 34555666666666554332 234555655554322222111 1234566777777765320 0112233444
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHH
Q 002921 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDM 667 (865)
Q Consensus 588 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~ 667 (865)
.++.++..-| .+.+..++... .. ..+ ...-+.+..++..+.+.|.|-... .++-+
T Consensus 138 ~La~~a~~~~---~~~La~il~~y----a~----------------~~f-r~~~dfl~~v~~~l~~~f~P~~~~-~~l~~ 192 (262)
T PF14225_consen 138 ALAQVAEAQG---LPNLARILSSY----AK----------------GRF-RDKDDFLSQVVSYLREAFFPDHEF-QILTF 192 (262)
T ss_pred HHHHHHHhCC---CccHHHHHHHH----Hh----------------cCC-CCHHHHHHHHHHHHHHHhCchhHH-HHHHH
Confidence 4444443322 22333333322 11 122 223456667777777766443321 37778
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 002921 668 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ 741 (865)
Q Consensus 668 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 741 (865)
+...+.+....+|..++..+..+.....-. .|+-.+++..+.+.++.+ ....|...+..++...++
T Consensus 193 Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~-------~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 193 LLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD-------LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc-------cHHHHHHHHHHHHhhccc
Confidence 888888888999999999999999876533 457777888888888775 334555566665555443
No 304
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.94 E-value=2.5 Score=28.07 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWT 456 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (865)
+.+...+...+.|+++.||.+|..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4678888999999999999999765
No 305
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.53 E-value=6.3 Score=32.54 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=49.5
Q ss_pred hhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhh-hHhhHHHHHHHHHHhcCCC
Q 002921 655 IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLSDFLDIAAKQLNTP 716 (865)
Q Consensus 655 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~ 716 (865)
..|+++. ++.++...+.+-.++||..|+..++-+..++++. +..+..++++.+...+...
T Consensus 5 l~p~~~~--l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPL--LMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHH--HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4456654 7777888888889999999999999999999988 6677778888888877654
No 306
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.51 E-value=5.5 Score=33.57 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=53.4
Q ss_pred cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHh
Q 002921 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (865)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~ 123 (865)
.+..|+.+|.. +.++.+-..|+.-+...++.+-.....-.+-..|..+.++|.++++.||..|-.++..+...
T Consensus 44 llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 35678888854 56888888899888888887543322234456688899999999999999999999888754
No 307
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.38 E-value=10 Score=34.38 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred Hhhhhh--CCChhHHHHHHHHHHHHHHhcCcCChHHHH-HHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCC
Q 002921 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLELL-QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (865)
Q Consensus 98 ll~~l~--~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll-~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (865)
++..|. ..++.+|..+..+++.+... .+..+.+.+ +++...+..++......++.++..+....++.-..-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 444443 35788999999999988633 234444444 4444445444444566677777777766554321111
Q ss_pred CcchhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHhccc--cHHhHHhHHHHHHHHHHhhC-CCCHH-HHHHHHHHHH
Q 002921 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLM--PSALFVSMDQYLQGLFLLSN-DPSAE-VRKLVCAAFN 246 (865)
Q Consensus 175 ~~~~~~l~~~l~~~l~--~~~~~vr~~a~~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~-~~~~~-~r~~~~~~l~ 246 (865)
..+.+++.+..... ..+..+...+++++..-+..- -..+..+ +++.|-...+ +++.. +|..+.-+|.
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~---~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN---YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH---CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH---HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 12677888888888 678899999999998775321 1122333 3444444453 33344 5666555554
No 308
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=79.31 E-value=42 Score=30.81 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHhccccHHhHH---------hH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 002921 193 HTSLRKLSLGSVNQFIMLMPSALFV---------SM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~---------~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~ 262 (865)
+...|..+++.+..+++..++.+.. .+ ..+.+.+......++..+-..+++++..+.......++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888766554441 11 2344555655555567788889999999988888888887877
Q ss_pred HHHHHhh-hcCCC--CHHHHHHHHHHHHHhhcc
Q 002921 263 LFEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (865)
Q Consensus 263 l~~~l~~-~~~~~--~~~v~~~a~~~l~~l~~~ 292 (865)
++..+.. .+... ...-|..+++++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777665 44332 235678899999988875
No 309
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=79.12 E-value=34 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (865)
+.+...+..+|.+++++|+..|++|+..+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 667778889999999999999999998874
No 310
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.82 E-value=44 Score=29.21 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchh-hHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QFEKVLMGLLKRILDT--NKRVQEAACSAFATLEE 508 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~ 508 (865)
...+..+.+.+++++|.+...|+..+..+.+.+... .... .-..++..+...+.++ .+.|+..+...+.....
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~----f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK----FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999999999887542 1222 2345677777777764 34499999999988887
Q ss_pred Hhc
Q 002921 509 EAA 511 (865)
Q Consensus 509 ~~~ 511 (865)
..+
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 764
No 311
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=78.78 E-value=8.1 Score=31.13 Aligned_cols=58 Identities=19% Similarity=0.059 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCCh--HHHHHHHHHHHhhHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKF 463 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~ 463 (865)
|..|+-|...++.++..+++.....-+.++..+.+.+.|++. ..+..|+..|..+...
T Consensus 20 ~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 20 WALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988866655666788888888887654 5677888888877654
No 312
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.51 E-value=14 Score=31.79 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 429 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
.++..++|.+...+. ...+..|.++...++.++...+ -..+.+..++..+.+....... ...+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 467789999999998 7888999999999999998765 2455566666666655544333 456777777777
Q ss_pred HH
Q 002921 508 EE 509 (865)
Q Consensus 508 ~~ 509 (865)
+.
T Consensus 74 q~ 75 (121)
T PF12397_consen 74 QS 75 (121)
T ss_pred Hc
Confidence 54
No 313
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.10 E-value=40 Score=28.79 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhh
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~ 517 (865)
...+..++..|.+.|++.++.|+..+...|..+|....+.+...
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~ 76 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRE 76 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHH
Confidence 45577999999999999999999999999999998876555433
No 314
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.94 E-value=26 Score=29.73 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH----h--cCCCHHHHHH
Q 002921 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----l--~~~~~~vr~~ 199 (865)
+....+.+..|.+-+.+.+|.+..-|+.+|..+++.+++.+..++. -..++..+++. . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~------~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA------SNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH------HhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5667889999999999999999999999999999999886644321 12233333321 1 1247789999
Q ss_pred HHHHHHHHh
Q 002921 200 SLGSVNQFI 208 (865)
Q Consensus 200 a~~~l~~~~ 208 (865)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988887764
No 315
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=2.1e+02 Score=35.92 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHH
Q 002921 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (865)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (865)
+.+..||..+..+++.- -...|..++..+.....+.+....+.+...+..+............ -..+.+.++
T Consensus 1048 s~s~~Irelv~rC~~~n----ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~----~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSN----IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE----MDSFKDCVK 1119 (1514)
T ss_pred cCcchhHHHHHhhhhhh----hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh----hHHHHHHHH
Confidence 34677888888777722 2458999999999999888888888888888766655433221100 012334444
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhccccH-----HhH--------HhHHHHHHHHHH---hhCCCCHHHHHHHHHHHH
Q 002921 184 RLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS-----ALF--------VSMDQYLQGLFL---LSNDPSAEVRKLVCAAFN 246 (865)
Q Consensus 184 ~l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~-----~~~--------~~~~~~l~~l~~---~~~~~~~~~r~~~~~~l~ 246 (865)
.+.++..+. .+..-..++..+..++....+ .+. .+...++|.++. ...+....+|..+++.+.
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 444444331 122222222222222211110 111 111223444443 233567889999999999
Q ss_pred HHHhhchhhhhh-hHHHHHHHHhhhc
Q 002921 247 LLIEVRPSFLEP-HLRNLFEYMLQVN 271 (865)
Q Consensus 247 ~l~~~~~~~~~~-~l~~l~~~l~~~~ 271 (865)
.+...+++.+.. .+..+...+..+.
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF 1225 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIF 1225 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecc
Confidence 988888877654 5567777555443
No 316
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.49 E-value=3.6 Score=26.83 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.8
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhH
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (865)
.++.+++.+.++++.++..++|++++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777788889999999999999875
No 317
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=75.93 E-value=1.1e+02 Score=35.59 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=69.9
Q ss_pred HHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc--cHH
Q 002921 137 VTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PSA 214 (865)
Q Consensus 137 ~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~--~~~ 214 (865)
.+-++........-|+.++..++..|.++.. .....++.++..+|.+..++++..++.++..|+..- .+.
T Consensus 62 ~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n--------~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~s 133 (819)
T KOG1877|consen 62 YKDLRRERFGSVKIAMEAYDKLLQACKEQIN--------LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPS 133 (819)
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCch
Confidence 3334444555566788899999988887652 235788888999999999999999999999998432 223
Q ss_pred hHHhHHHHHHHHHHhhCC-CC----HHHHHHHHHHHHHHH
Q 002921 215 LFVSMDQYLQGLFLLSND-PS----AEVRKLVCAAFNLLI 249 (865)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~-~~----~~~r~~~~~~l~~l~ 249 (865)
+...++.++..++++... ++ ..+|.+.+++|..++
T Consensus 134 y~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 134 YHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred hhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHH
Confidence 334456667777766543 22 234555555555443
No 318
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=75.65 E-value=2.4e+02 Score=36.01 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=84.5
Q ss_pred chhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002921 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (865)
Q Consensus 422 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~ 501 (865)
+....+..|++.++...-.++.++++.++.-+..+...+...+. .-+-.+++..|+..+.+.+..-...|..
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd--------s~~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD--------SYCQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---------HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33445678889998888888999999999988877776665542 1123578888888776554444467888
Q ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 002921 502 AFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 502 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (865)
.|..++....+.+.|| ..++..+++.+.+......+.++..+..++-.-
T Consensus 496 vL~~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 8888888777777777 445566677777777777778888888887654
No 319
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=74.67 E-value=47 Score=34.56 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh
Q 002921 11 EQGFNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (865)
Q Consensus 11 ~~~~~~~~~~l~~~~-s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~ 81 (865)
..+++.+-.++-... ||+- .++-|.+++.+ .|+.-|+.++- +.|+.-|..-=..|++.-.+
T Consensus 146 wphLqlvye~~Lrf~~sp~~--d~~vaK~yid~-----~FvlkLLdLFd---SEDpRERe~LKT~LhrIygK 207 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDF--DPSVAKKYIDQ-----KFVLKLLDLFD---SEDPREREFLKTILHRIYGK 207 (457)
T ss_pred chHHHHHHHHHHHHHhCccc--CHHHHHHHhhH-----HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHH
Confidence 345666666665554 5665 47778777743 46666777774 67888888777777665543
No 320
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=74.38 E-value=39 Score=33.11 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=75.8
Q ss_pred hhhhhhhHHHHHhh--hhh-hhhcccchHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHh
Q 002921 639 CCLDLLSGLAEGLG--SGI-ESLVAQSNLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQ 712 (865)
Q Consensus 639 ~al~~l~~l~~~~~--~~~-~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~ 712 (865)
.++.++.+++.+-. ..| ...++- .++|++...-+.+ .+.+|-.+++.+|.+++.....+..|+- +++|.+++.
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~ipl-yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPL-YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGG-GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchh-hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 45566666665321 111 112232 4778876655543 4668999999999999987777777764 689999888
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhcc------cccc--chHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 713 LNTPKLKETVSVANNACWAIGELAVKAR------QEIS--PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 713 l~~~~~~~~~~~~~~a~~~l~~l~~~~~------~~~~--~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
++.. +.-.|..|..-+..+...-. .... -.+..++..++..+.... ...+.+..+.|.-|+..
T Consensus 148 me~G----selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p--S~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 148 MEFG----SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP--SPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHS-----HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTT
T ss_pred HHhc----cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC--ChhHHHHHHHHHHHHcc
Confidence 8765 44556667777777664321 1111 123444444443333221 35566777777777764
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.95 E-value=56 Score=27.94 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHH---HHHHHHHhhCC--------CCHHHHHHHHHHHH
Q 002921 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ---YLQGLFLLSND--------PSAEVRKLVCAAFN 246 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~l~~l~~~~~~--------~~~~~r~~~~~~l~ 246 (865)
..+++..+.+-|++.++.|+..++++|..++...++.+...+.. ++..+.+.-.. +...+|..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 46788889999999999999999999999998877666554432 33344333221 23568888877776
Q ss_pred HHH
Q 002921 247 LLI 249 (865)
Q Consensus 247 ~l~ 249 (865)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 654
No 322
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.94 E-value=29 Score=33.40 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC-ChhHHhHH-HHHHHHHHhhchhhcccCCC
Q 002921 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGA-MDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~a-l~~L~~l~~~~~~~~~~~~~ 171 (865)
....+..+..++....|..++.++........ +..++.+...+..- ++.+.... ..+++.+....
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--------- 118 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLT----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--------- 118 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------
Confidence 33445556677777777766655554332211 23566666766653 55555443 44444443321
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
+...+.+.+.+.+++.-+|+.++.++..+... ...+.++..+-..+.+++..++..+.-+|..+...
T Consensus 119 -------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 -------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp -------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred -------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999998777555443 34455566666677888888999888899988888
Q ss_pred chhhhhhhHHH
Q 002921 252 RPSFLEPHLRN 262 (865)
Q Consensus 252 ~~~~~~~~l~~ 262 (865)
.++...+++..
T Consensus 186 ~~~~v~~~l~~ 196 (213)
T PF08713_consen 186 DPDEVLEFLQK 196 (213)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88776666554
No 323
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.32 E-value=2.1e+02 Score=34.38 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=85.9
Q ss_pred HHHHHHHHHhh-----ccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 130 LELLQALVTCL-----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 130 ~~ll~~l~~~l-----~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
.+++..+...+ ++-.+.+|..++.-|+..++.++..+-+ +..+.-+==.|.|.+.+||..++++|
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL 350 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKAL 350 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHH
Confidence 44555555443 4668899999999999999999987654 23344444467889999999999999
Q ss_pred HHHhccc--cHHhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHH
Q 002921 205 NQFIMLM--PSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALE 281 (865)
Q Consensus 205 ~~~~~~~--~~~~~~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~ 281 (865)
..+.+.- .+.+......+=..++... .+-+..||...+..+.... .+..+.. .=+..+...+-+.+++++..
T Consensus 351 ~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~d---~di~~Vy~Li~d~~r~~~~a 425 (1048)
T KOG2011|consen 351 IKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLSD---KDILIVYSLIYDSNRRVAVA 425 (1048)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--cccccCh---hHHHHHHHHHhccCcchHHH
Confidence 9998761 1122222223334445544 3445556655444433322 2222110 11122333455667778888
Q ss_pred HHHHHHHh
Q 002921 282 ACEFWHSY 289 (865)
Q Consensus 282 a~~~l~~l 289 (865)
|.+++..-
T Consensus 426 a~~fl~~k 433 (1048)
T KOG2011|consen 426 AGEFLYKK 433 (1048)
T ss_pred HHHHHHHH
Confidence 88877653
No 324
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=72.94 E-value=17 Score=29.93 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhh-hhhhHHHHHHHHhhhc
Q 002921 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHLRNLFEYMLQVN 271 (865)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~l~~~l~~~~ 271 (865)
+.+.++++.++..+...+.+-.+++|..+++.|..+.+.+|+. +..+..++++.....+
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 3456777777888888888888999999999999999999988 6667777777665544
No 325
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.82 E-value=7 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 480 ~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
.++.+++.+.+++..++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888888999999999999875
No 326
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=72.67 E-value=92 Score=29.84 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHH
Q 002921 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr 110 (865)
.|+-|...+...... .+....+++-|-. +..-+.|..|..+|....+ ..+++..+.+.. ++.. -.+-.+-
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~-~l~~--~~~Wd~v 98 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYKK----FLTPEDLPLLEE-LITT--KSWWDTV 98 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH-HHcC--CchHHHH
Confidence 777777777766543 3444444554443 4556899999888776433 255555444433 2222 1234443
Q ss_pred HHHHH-HHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh
Q 002921 111 STVGT-IVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (865)
Q Consensus 111 ~~~a~-~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (865)
...+. +++.+... -+.+.+.+.....+++.-.|..|+.+.-...+.. ..+.++..+...+
T Consensus 99 D~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~--------------~~~~l~~~~~~~~ 159 (208)
T cd07064 99 DSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT--------------DTDLLFEIILANL 159 (208)
T ss_pred HHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc--------------CHHHHHHHHHHhC
Confidence 43333 33443332 2456788889999999888888876533322211 1356666777778
Q ss_pred cCCCHHHHHHHHHHHHHHhccccHHhHHhH
Q 002921 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (865)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (865)
.|+..-|+.+.--+|..+....|+.....+
T Consensus 160 ~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 160 GSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888888999999999999988766655544
No 327
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=71.46 E-value=1.1e+02 Score=30.15 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=56.7
Q ss_pred hhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--------HHhH
Q 002921 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--------SALF 216 (865)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~--------~~~~ 216 (865)
...|.+++-+++.+++.-....-+.. .-.+++|..++.+..++.--+..|..++..+..... .+-+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fL------l~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf 183 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFL------LQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF 183 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHH------HCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHH------HhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH
Confidence 46788899999999985433211100 115789999999998888888888888887764311 0111
Q ss_pred HhHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 217 VSMDQYLQGLF-LLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 217 ~~~~~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
..+..++..+. .+..++++..-+.++.|-..+.++
T Consensus 184 ~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 184 FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 12222333322 233455555555666666655543
No 328
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=1.9e+02 Score=32.53 Aligned_cols=287 Identities=20% Similarity=0.160 Sum_probs=138.7
Q ss_pred hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002921 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 388 ~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
..-+..+.+++-+.+ ...+-+|+..+|....+..+...| ++-.+...+.+++..+|.+++.=+|-...
T Consensus 414 d~gL~qldkylys~~---~~ikaGaLLgigi~~~gv~ne~dp----alALLsdyv~~~~s~~ri~aIlGLglaya----- 481 (878)
T KOG2005|consen 414 DKGLEQLDKYLYSDE---SYIKAGALLGIGISNSGVFNECDP----ALALLSDYLQSSSSIHRIGAILGLGLAYA----- 481 (878)
T ss_pred hhhHHHHHHHhhcCC---chhhhccceeeeeeccccccccCH----HHHHHHHhccCCCceeehHHhhhhHHhhc-----
Confidence 345667777777776 678888998888777666554433 34445566778888899888766653221
Q ss_pred hCCCcchhhHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH-HHhccchhhhHHHHHHHHHHHhccc-chhhHHHHHHH
Q 002921 468 IGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLE-EEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDA 543 (865)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~l~d~~~--~vr~~a~~al~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~~~~ 543 (865)
...-+++...|.+.+.|.+. .|..-|.-+++.+. ..|.+. .-..|++.++..-... ...-.+ +-+
T Consensus 482 ------Gsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d---vts~ilqtlmekse~El~d~~~R--FL~ 550 (878)
T KOG2005|consen 482 ------GSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED---VTSSILQTLMEKSETELEDQWFR--FLA 550 (878)
T ss_pred ------CCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChH---HHHHHHHHHHHhhhhhhhchHHH--HHH
Confidence 11224555567777777644 45555555555443 223322 2334444444322210 111122 222
Q ss_pred HHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 002921 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (865)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (865)
++--.-..|+. +..+.+...+ ...+ + .+.+..+++-..+...|..-.-..+. ...+....
T Consensus 551 LGL~llflgkq----e~~d~~~e~~----~~i~--~-~~~~~~~~lv~~caYaGTGnvl~Iq~-----q~ll~~cg---- 610 (878)
T KOG2005|consen 551 LGLALLFLGKQ----ESVDAVVETI----KAIE--G-PIRKHESILVKSCAYAGTGNVLKIQS-----QLLLSFCG---- 610 (878)
T ss_pred HHHHHHHhccc----chHHHHHHHH----HHhh--h-HHHHHHHHHHHHhhccccCceEEech-----hhhhhhcC----
Confidence 22222233333 1222222111 1111 0 11233334444444445432222211 01111111
Q ss_pred cccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH
Q 002921 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (865)
Q Consensus 624 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (865)
+.+. +.+ .+.-+.+++.-.-++|++...-+ .+..+-..++..++.+|++.--++|-++...+ .+
T Consensus 611 E~~~-----~~e-~~~~~avLgiAliAMgeeig~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNP-----q~- 674 (878)
T KOG2005|consen 611 EHDA-----DLE-SEQELAVLGIALIAMGEEIGSEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP-----QV- 674 (878)
T ss_pred CCcc-----chh-hhccchhhhhhhhhhhhhhhhHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC-----cc-
Confidence 1110 000 00112334444444555433222 33334444556778888877777777776543 11
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.++..+.+...+. +.++.-|++.++|-+.-
T Consensus 675 ~vlDtLsk~shd~----D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 675 NVLDTLSKFSHDG----DLEVAMNAIFAMGLIGA 704 (878)
T ss_pred hHHHHHHHhccCc----chHHHHHHHHHhccccC
Confidence 3556666665555 67888899999887643
No 329
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=70.33 E-value=1.9e+02 Score=32.48 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=52.9
Q ss_pred CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhh-ccHHHHHHHHHhccCCCChHHHHHHHHHHHhh
Q 002921 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (865)
Q Consensus 383 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (865)
....+..++-.+...+.+..+ -..|-+.+..++.+++... +... +..+.+....-..|.|.++.++..|+.++++|
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp--~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPP--DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCC--ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 344455555555666644321 4578888888888876443 2222 34455554455568999999999999999999
Q ss_pred HHHH
Q 002921 461 SKFI 464 (865)
Q Consensus 461 ~~~~ 464 (865)
++..
T Consensus 551 Ae~T 554 (559)
T PF14868_consen 551 AERT 554 (559)
T ss_pred hccC
Confidence 9864
No 330
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=69.47 E-value=81 Score=27.91 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=59.6
Q ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH-HHHHHcC---CCHHHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG-LLKRILD---TNKRVQEAACSAFATL 506 (865)
Q Consensus 432 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~d---~~~~vr~~a~~al~~l 506 (865)
.+.+..+.+.++ ++++.+...|+.++..+.+.++..+ ...-.-..++.. +.+.+.. .+..|+..+...+..+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~f---h~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRF---HVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHH---HHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 346777778887 4789999989999998888876421 111122456665 6666653 3468999999999988
Q ss_pred HHHhccc-hhhhHHHHHHHH
Q 002921 507 EEEAAEE-LAPRLEIILQHL 525 (865)
Q Consensus 507 ~~~~~~~-~~~~~~~i~~~l 525 (865)
....+.. -.+++..+.+.|
T Consensus 114 ~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHhCCCccchHHHHHHHHH
Confidence 8776432 234445554444
No 331
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=67.09 E-value=76 Score=32.82 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=58.4
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH--HHHHHHHHhccC-CCChHHHHHHHHHHHhhH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD-DKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 461 (865)
..-...+..+...+++.+ ..+..-|+..++.++.+|++.+...+ .++...+...+. ..++.|+.....++.+++
T Consensus 41 ~~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred cccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 334567888888999988 99999999999999999997664322 223444445555 578899998888888888
Q ss_pred HHHh
Q 002921 462 KFIV 465 (865)
Q Consensus 462 ~~~~ 465 (865)
+.++
T Consensus 118 ee~K 121 (462)
T KOG2199|consen 118 EEFK 121 (462)
T ss_pred HHhc
Confidence 8765
No 332
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=67.07 E-value=2.3e+02 Score=32.13 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=82.7
Q ss_pred CCCCChhhHHH-HHHHH-H-HhcCCCCHHHHHHHHHHHHHH-hc-CCCcHH-HHHHhhhcccCCCHHHHHH-HHHHHHHH
Q 002921 6 AWQPQEQGFNE-ICRLL-E-QQISPSSTADKSQIWQQLQQY-SQ-FPDFNN-YLAFILARAEGKSVEIRQA-AGLLLKNN 78 (865)
Q Consensus 6 ~~~~~~~~~~~-~~~~l-~-~~~s~~~~~~r~~a~~~L~~~-~~-~p~~~~-~l~~il~~~~~~~~~~R~~-a~~~L~~~ 78 (865)
|-++.++ +|. +..++ . ++.+|.-. +|+.|.+.|.+. .. .|..+. .++.++ | -....|.. ..-.+++.
T Consensus 376 S~s~~~~-lqt~L~hll~~~alFDpel~-vRr~a~Aal~E~iGR~~s~a~g~~lIslI--N--~~sv~r~s~csg~~~r~ 449 (993)
T COG5234 376 SKSAIEG-LQTNLIHLLLQTALFDPELN-VRRAATAALFEVIGRHASIADGLSLISLI--N--YVSVTRISNCSGDLCRK 449 (993)
T ss_pred ccccchh-HHHHHHHHHHhhhhcCchhh-hhhHHHHHHHHHhccCCCcccchhhhhhc--c--ceecchhhhcchHHHHH
Confidence 4445555 444 33333 3 45688888 999999999985 44 444443 333333 1 11122322 22334444
Q ss_pred HHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHH
Q 002921 79 LRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (865)
Q Consensus 79 i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l 158 (865)
+.+ +.++..-. +..+..|+.-|.+-++.++...+..+..+.+ ++...|.++|.+...+.++ -..+..++..+
T Consensus 450 ~~~-~~k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK--~~~~~p~yl~~Il~k~~sd----fi~~~~il~~~ 521 (993)
T COG5234 450 VAH-FPKFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK--YPKELPIYLPPILDKLSSD----FIFGYTILASI 521 (993)
T ss_pred hcC-ccccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhc--CcccCchhhhHHhhhCchh----hhcchhhHHHH
Confidence 433 23322222 3344457777777788888888888888855 3556677777777666543 22345567777
Q ss_pred Hhhchh
Q 002921 159 CEDIPQ 164 (865)
Q Consensus 159 ~~~~~~ 164 (865)
.+.+..
T Consensus 522 ~k~F~~ 527 (993)
T COG5234 522 IKGFLF 527 (993)
T ss_pred HHHhcC
Confidence 776643
No 333
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=66.67 E-value=72 Score=28.70 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCC-Ccch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 002921 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS-DKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (865)
Q Consensus 539 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 616 (865)
.+.+++-.++-.+.+.... |.+-.++..-...+...... .... ......+..+...++.-|.||...++..+.++|.
T Consensus 40 ~v~~~~~~lV~KLnE~~FR-PlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~ 118 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFR-PLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLK 118 (153)
T ss_pred HHHHHHHHHHHHcccchhH-hHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666554322 45555554433222221111 1111 3455667788888888899999999999999988
Q ss_pred HHH
Q 002921 617 TQQ 619 (865)
Q Consensus 617 ~~~ 619 (865)
...
T Consensus 119 ~~~ 121 (153)
T PF08146_consen 119 QFN 121 (153)
T ss_pred Hhh
Confidence 754
No 334
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=2.9e+02 Score=33.06 Aligned_cols=91 Identities=8% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhccccH---------HhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhchhhhhhhHHH-HH
Q 002921 196 LRKLSLGSVNQFIMLMPS---------ALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN-LF 264 (865)
Q Consensus 196 vr~~a~~~l~~~~~~~~~---------~~~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~-l~ 264 (865)
-...++.+|.+++...|+ .+..+++ .++..+. ..+.++.+.+++++..+..+.+ .+...... .+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~----l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFP----LLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccH----HHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHH
Confidence 345678888888887763 1222332 2333222 3456777888888876665433 22222221 22
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 265 EYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 265 ~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
..+++ +-+.-+..|..+++.+.++++.
T Consensus 1816 ~~LL~-lLHS~PS~R~~vL~vLYAL~S~ 1842 (2235)
T KOG1789|consen 1816 TTLLT-LLHSQPSMRARVLDVLYALSSN 1842 (2235)
T ss_pred HHHHH-HHhcChHHHHHHHHHHHHHhcC
Confidence 22222 2345567899999999999876
No 335
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=65.81 E-value=3.5e+02 Score=33.90 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccH-H-HHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCch
Q 002921 750 VVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM-E-HFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 750 il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 827 (865)
+++.++..|+.. .-.++-|++++|+.|..++|..-. ++ + ..+..+.+.+ +.++...-..+..+|.+++..-|.
T Consensus 531 CLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~DQq-~LwD~gAv~mLrnLI-hSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 531 CLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPEDQQ-MLWDDGAVPMLRNLI-HSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHHHHH-HHHhcccHHHHHHHH-hhhhhhhhhhHHHHHHHHhcCCch
Confidence 566677777655 345788999999999988764211 11 1 1122222222 335566777788899999887654
No 336
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=65.69 E-value=37 Score=29.09 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=51.4
Q ss_pred chhhhhHHHHHHhhc-cCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
.+++.++|.+...+. +.. ...|-++++.++.++...+= -.+.+..++..+......... ...++.++..+...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 456788999999998 555 88999999999999976541 123455566666666655444 45677777777654
No 337
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=65.60 E-value=1.2e+02 Score=28.55 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=86.1
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHH
Q 002921 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATLEE 508 (865)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~--vr~~a~~al~~l~~ 508 (865)
..+++..+++..-..-.+||..|..++..+...-.... ...++. +.+...+..++.. .-..+..++..++.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~---~~ip~~----~~L~~i~~~~~~~~~~w~~~~~~F~~l~~ 77 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI---PHIPHR----EELQDIFPSESEASLNWSSSSEYFPRLVK 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---cCCCcH----HHHHHHcccccccccccCCHHHHHHHHHH
Confidence 44555666666666667999999999988873221100 011122 2222222221110 01122334444443
Q ss_pred HhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHH
Q 002921 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (865)
Q Consensus 509 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (865)
-+ .+..|...++..++-......+...+.+..++-..+...... +.-...++..++..+.....+++....++++
T Consensus 78 LL--~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~---~~~~~~v~~~l~~il~~~~~~dRv~vP~l~t 152 (193)
T PF12612_consen 78 LL--DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDS---PEELEQVLSDLLSILKENLRNDRVVVPLLKT 152 (193)
T ss_pred Hh--ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhCCCCCeeecHHHH
Confidence 22 123577788888888887776666666666666555533221 1456778888888887765566655677777
Q ss_pred HHHHHHH
Q 002921 589 FTSIAQA 595 (865)
Q Consensus 589 l~~l~~~ 595 (865)
+..+...
T Consensus 153 l~~Ll~~ 159 (193)
T PF12612_consen 153 LDFLLSS 159 (193)
T ss_pred HHHHHhC
Confidence 7766654
No 338
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=65.56 E-value=83 Score=26.58 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=51.2
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH--HHHHHHh----cc--CCCChHHHHHHHHH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~ 456 (865)
.....++..+...+++.+ |++..-|+..+-.++..+++.+...+.. .+..++. .. .+.+..||..+..+
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678888888898887 9999999999999999998766544322 1112221 11 24577899988776
Q ss_pred HHhh
Q 002921 457 LSRF 460 (865)
Q Consensus 457 l~~l 460 (865)
+...
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 6543
No 339
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=65.02 E-value=1.9e+02 Score=30.47 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhhhhCC----CcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhh
Q 002921 766 KSLIENSAITLGRLAWVCP----ELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841 (865)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~ 841 (865)
+.++..+...+-.|+..+. ......+...+..+++. .-.......|+.+..+...+|+-+.+-+|.+-..+.
T Consensus 272 ~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk----~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 272 PQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQK----YLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLK 347 (373)
T ss_pred cchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4567777777777775433 12222233344444332 122344568899999999999988888888887776
Q ss_pred ccCCCc------cHHHHHHHHHh
Q 002921 842 SWHVRI------TLHLILLSVIF 858 (865)
Q Consensus 842 ~~~~~~------~~~~~~~~~~~ 858 (865)
..+.-- .+..+++.|++
T Consensus 348 ~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 348 DSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHhcCCcCHHHHHHHHHHHH
Confidence 654311 15555555543
No 340
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=2e+02 Score=30.78 Aligned_cols=123 Identities=19% Similarity=0.093 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHH
Q 002921 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (865)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 486 (865)
..-.+|+..|-.+++...-..+-.-..++..+++++.-.+..+-......+.+++.+-.. ...---..++..+.+
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN-----K~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN-----KIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc-----hHHHHhccHHHHHHH
Confidence 344567777888888776555445566888899999887776666666666655544321 111112457788888
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch
Q 002921 487 RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR 534 (865)
Q Consensus 487 ~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 534 (865)
.+...++.++......+-++.-..+-.-.-.-..++|.+..++++...
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc
Confidence 888888999988777766654332211111234566777777766543
No 341
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=64.73 E-value=14 Score=28.17 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhccHH--HHHHHHHhcc-CCCChHHHHHHHHHHHhhHHHH
Q 002921 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 408 ~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
..+++++++|.++.... =.++++ ++++.+++.. +.|...+|..|+.+++-++...
T Consensus 3 ~lKaaLWaighIgss~~--G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL--GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChH--HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46899999999976432 122333 4778777765 4678899999999999888754
No 342
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.87 E-value=1.3e+02 Score=28.31 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=54.6
Q ss_pred HHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchh
Q 002921 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (865)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~ 515 (865)
+.+..-..++++.+|++++.++..+... ..+...++..+-..+.|++..||.++.++|..+.....+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 5667778899999999997766554432 234567777777777888899999999999988876555444
Q ss_pred hhHHH
Q 002921 516 PRLEI 520 (865)
Q Consensus 516 ~~~~~ 520 (865)
+|+..
T Consensus 178 ~~l~~ 182 (197)
T cd06561 178 AFLEK 182 (197)
T ss_pred HHHHH
Confidence 44443
No 343
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.56 E-value=78 Score=32.74 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=54.0
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHh
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~~~ 510 (865)
.+.+..|.+++++.++.|.-.|+.+++.+...|..-+. .+-....+...+...+. ..++.|+++....+..+.+.+
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r---~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFR---LEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHH---HHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999888865321 11222344444444455 457888888777777777765
Q ss_pred c
Q 002921 511 A 511 (865)
Q Consensus 511 ~ 511 (865)
+
T Consensus 121 K 121 (462)
T KOG2199|consen 121 K 121 (462)
T ss_pred c
Confidence 4
No 344
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=63.32 E-value=1.7e+02 Score=29.27 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=82.6
Q ss_pred hHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHh-ccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002921 390 LMPVIQAKLSASGDEA-WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSKFIVQD 467 (865)
Q Consensus 390 ~~~~l~~~l~~~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (865)
.+|.+...+.+++.-. -..-..+...|+.+++.. -.+.+..++....+ ..++....++..+ ..+.+.+
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~---~~~~La~il~~ya~~~fr~~~dfl~~v~----~~l~~~f--- 181 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ---GLPNLARILSSYAKGRFRDKDDFLSQVV----SYLREAF--- 181 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC---CCccHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHh---
Confidence 3555555554443000 022233345555555322 23556666654333 3445444444433 2233332
Q ss_pred hCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 002921 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (865)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l 547 (865)
.+.+..+++..++..+.++.+-+|..+...+..++....-. .|+-++++..+.+.++..-.. .|++.+..+
T Consensus 182 -----~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~---eAL~VLd~~ 252 (262)
T PF14225_consen 182 -----FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWM---EALEVLDEI 252 (262)
T ss_pred -----CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccHH---HHHHHHHHH
Confidence 24455677788888888888899999999999888765333 447788888899998875443 345555555
Q ss_pred HHHhcc
Q 002921 548 ADAVGF 553 (865)
Q Consensus 548 ~~~~~~ 553 (865)
....|.
T Consensus 253 v~~s~s 258 (262)
T PF14225_consen 253 VTRSGS 258 (262)
T ss_pred Hhhccc
Confidence 554443
No 345
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=62.90 E-value=19 Score=33.82 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHhhhhhCCCcccccH--HHHHHHHHHHhccCCChHH-HHHHHHHHHHHHhhCchhhHhhHHHHHHHhh
Q 002921 765 NKSLIENSAITLGRLAWVCPELVSPHM--EHFMQPWCIALSMIRDDTE-KEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841 (865)
Q Consensus 765 ~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~l~~~~~~l~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~ 841 (865)
.+-+|-.+++++|.++....+.+..++ -.+++..+..+.. ..+. |-.++..+..++. +. -.+.++++.+-
T Consensus 159 fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~--gSElSktvaifI~qkil~-dD----vGLqYiCqT~e 231 (315)
T COG5209 159 FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMEL--GSELSKTVAIFIFQKILG-DD----VGLQYICQTFE 231 (315)
T ss_pred cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHh--hhHHHHHHHHHHHHHHhc-cc----hhHHHHHHHHH
Confidence 566888899999999976655554443 3466666666554 2333 3334444444443 33 35788888888
Q ss_pred ccCCCcc-HHHHHHHHHhcCccc
Q 002921 842 SWHVRIT-LHLILLSVIFFGSFW 863 (865)
Q Consensus 842 ~~~~~~~-~~~~~~~~~~~~~~~ 863 (865)
.|..-.. ++.|..+++++|++-
T Consensus 232 RFyAv~~vln~mv~qlVs~~~~R 254 (315)
T COG5209 232 RFYAVNLVLNSMVSQLVSLGSTR 254 (315)
T ss_pred HHHHHHHHHHHHHHHHhhccchh
Confidence 8888666 889999999999863
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=41 Score=36.42 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred hhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchh
Q 002921 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (865)
Q Consensus 100 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 179 (865)
..|.+++..+--.+|..| ..+ ...-++.+..|.+.+++.++.+...|+.+|..+++.|++.+..++ .-.
T Consensus 12 ~~l~~pDWa~NleIcD~I----N~~-~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~V------a~k 80 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----NST-EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQV------ASK 80 (470)
T ss_pred ccccCccHHHHHHHHHHH----hcC-ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHH------HHH
Confidence 345556655544433332 222 223368999999999998889999999999999999999775432 226
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccc
Q 002921 180 IFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 180 ~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~ 212 (865)
.+++..+...... +..||..++..|..|-+.++
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 6777777776654 67899999999999977643
No 347
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=62.58 E-value=69 Score=30.29 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=47.9
Q ss_pred HHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
+.+.....+++. |..|.+....+.-+.. ....+.++..+-..+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 667777777763 6666554444443332 34567778888888889999999999999999988754
No 348
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=61.07 E-value=2.2e+02 Score=29.90 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHH
Q 002921 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMM 527 (865)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~ 527 (865)
.+....+.+|+.+...-... ....-++++..+..++.+. ....|..++.-.+-..+..+.++++.++..|.+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45566667777766654322 3344568888888887763 334566677666666788888899999888766
Q ss_pred Hhcc
Q 002921 528 AFGK 531 (865)
Q Consensus 528 ~l~~ 531 (865)
....
T Consensus 284 i~tt 287 (356)
T PF03542_consen 284 ISTT 287 (356)
T ss_pred hccc
Confidence 5543
No 349
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=60.36 E-value=1.5e+02 Score=27.90 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHhchhhh--hhccHHHHHHHHHhccCCCCh--HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKG--LYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 481 (865)
-++|..|..++..+....... ..++.+.+ ...+..++. ..-..+-+++..+...+ ....|...++
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L----~~i~~~~~~~~~~w~~~~~~F~~l~~LL-------~~~~y~~~ll 89 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREEL----QDIFPSESEASLNWSSSSEYFPRLVKLL-------DLPEYRYSLL 89 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHH----HHHcccccccccccCCHHHHHHHHHHHh-------ccHHHHHHHH
Confidence 488999999999888332121 12333222 222222211 11122334445455433 2457778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHH
Q 002921 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLAD 549 (865)
Q Consensus 482 ~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~l~~l~~ 549 (865)
..++-........+...+..+|-.++... ..-...+..++..++..+++... .+.--+++++..+..
T Consensus 90 ~Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~ 158 (193)
T PF12612_consen 90 SGLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS 158 (193)
T ss_pred hHHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh
Confidence 88888888777788888888888888644 22223455666666666665432 222234455554443
No 350
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=60.18 E-value=1.9e+02 Score=28.83 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=60.3
Q ss_pred HhHHhHHHHHHHHHHhhCCC-CH---HHHHHHH--HHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCC--------HHHH
Q 002921 214 ALFVSMDQYLQGLFLLSNDP-SA---EVRKLVC--AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD--------DDVA 279 (865)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~-~~---~~r~~~~--~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~--------~~v~ 279 (865)
.+......++..++..+.+. .. -.|+.+- -++..+....+..-.+.++..+..+++....+. +..+
T Consensus 135 ~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~q 214 (255)
T PF10350_consen 135 ELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQ 214 (255)
T ss_pred hHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHH
Confidence 34444556777777766554 11 3555432 233444444443322455555555555543321 3578
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhcc
Q 002921 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (865)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~ 315 (865)
..|+.++..+.........+.+|+...+...+..+.
T Consensus 215 VHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 215 VHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 899999999887755667788888887777665554
No 351
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=58.85 E-value=1.3e+02 Score=26.62 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHH-HHHHhccc---chhhHHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGKY---QRRNLRIVYDAIGTLA 548 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~---~~~~~~~~~~~l~~l~ 548 (865)
.-...+..+-+.+.. .++.|+..|...+..++++||..+...+ ..+++. |.+.+... ...++..+++.+....
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 346788888888874 6899999999999999999987764332 255655 66666532 2356667778888777
Q ss_pred HHhcc
Q 002921 549 DAVGF 553 (865)
Q Consensus 549 ~~~~~ 553 (865)
...+.
T Consensus 115 ~~f~~ 119 (141)
T cd03565 115 DAFRG 119 (141)
T ss_pred HHhCC
Confidence 76654
No 352
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=58.61 E-value=1.8e+02 Score=28.22 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch---------hhhhhhH
Q 002921 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP---------SFLEPHL 260 (865)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---------~~~~~~l 260 (865)
+..-+|..++..++.+++....++...+ .++++.++.....+++..+..|..++..+..... +.| .++
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF-~av 215 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERF-SAV 215 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHH-HHH
Confidence 4568999999999999998776666554 3678888888888877777777777766653221 111 122
Q ss_pred HHHHHHH-hhhcCCCCHHHHHHHHHHHHHhhccC
Q 002921 261 RNLFEYM-LQVNKDTDDDVALEACEFWHSYFEAQ 293 (865)
Q Consensus 261 ~~l~~~l-~~~~~~~~~~v~~~a~~~l~~l~~~~ 293 (865)
..++..+ .+..+..+...-..++.+...+.+.+
T Consensus 216 ~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 216 ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 2333322 23445566666677777777776653
No 353
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=57.68 E-value=3.1e+02 Score=30.55 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=56.1
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHH
Q 002921 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (865)
Q Consensus 230 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 309 (865)
..|-++.+|..+...|...+...|+.+.... .+...--.+.|.+..+|......+.-+++.....+.++.+++.+-..
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4466777888888888888888777653222 23333334667888899999888888877744445666666666555
Q ss_pred HHhhccC
Q 002921 310 LLSNMIY 316 (865)
Q Consensus 310 ll~~l~~ 316 (865)
++..+..
T Consensus 362 ILE~~r~ 368 (740)
T COG5537 362 ILEFLRT 368 (740)
T ss_pred HHHHHhh
Confidence 5554443
No 354
>PF14961 BROMI: Broad-minded protein
Probab=57.25 E-value=1.2e+02 Score=36.73 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred HHHhhhhh-CCChhHHHHHHHHHHHHHHhc--CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhc
Q 002921 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (865)
Q Consensus 96 ~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (865)
+.+++-|. +.+..||..+.+.+..+--.+ ..+.|+.+-..|...+.++|+...+.+++.....+...+..+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 34444443 356779999888777665444 568999999999999999999999999999888877665443
No 355
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.71 E-value=91 Score=33.89 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhh--HHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHhc
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~ 552 (865)
-..++.++.+.+++.++.|+..|...|..++++|+..|--. -..+++.++...+.. ..+++..++..|.....+.+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 34888999999999888999999999999999998876432 235677777777655 45677888888888888776
Q ss_pred c
Q 002921 553 F 553 (865)
Q Consensus 553 ~ 553 (865)
.
T Consensus 116 ~ 116 (470)
T KOG1087|consen 116 G 116 (470)
T ss_pred C
Confidence 6
No 356
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=56.51 E-value=13 Score=21.71 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHH
Q 002921 449 IRSISCWTLSRFSK 462 (865)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (865)
||.+|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68999999998775
No 357
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=56.22 E-value=2.1e+02 Score=28.15 Aligned_cols=87 Identities=17% Similarity=0.327 Sum_probs=56.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH------------------------------HhHHhHHHHHHHHHH
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS------------------------------ALFVSMDQYLQGLFL 228 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~------------------------------~~~~~~~~~l~~l~~ 228 (865)
..+-..+++.+.+.++.+|..|++.+..++-.... .+...-..++..++.
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~ 121 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLD 121 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 34444567778888999999999999888742110 011112346777777
Q ss_pred hhCCC--CHHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 002921 229 LSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (865)
Q Consensus 229 ~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (865)
.+.++ +...-..++.+|..+++..|.++...++.+..
T Consensus 122 ~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 122 VLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp HHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 77654 35666778888999999888765544444443
No 358
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.85 E-value=2.4e+02 Score=28.80 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhhhCcch------hhhhHHHHHHhh-ccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH-HHHHH
Q 002921 367 LRKCSAAALDVLSNVFGDEI------LPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFL 438 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~------~~~~~~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-i~~~l 438 (865)
.|..+-.+++.+...-|..- -....+.+...+ +..++ +.+-+.++.+++.++-..++.-...++. .-...
T Consensus 300 ~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~a 377 (461)
T KOG4199|consen 300 NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLA 377 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHH
Confidence 46666666666655555321 122233443332 22222 7888889999988887666543333322 22234
Q ss_pred HhccC-CC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 002921 439 IPLLD-DK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (865)
Q Consensus 439 ~~~l~-d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l 506 (865)
++.++ +| ...|++.|||++.++..+-.. .....+..=++.|+..-...++.++..+-.+|..+
T Consensus 378 vqAmkahP~~a~vQrnac~~IRNiv~rs~~-----~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 378 VQAMKAHPVAAQVQRNACNMIRNIVVRSAE-----NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhhhh-----ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 44443 33 347899999999999877543 24556666777888777777788887777777654
No 359
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=55.59 E-value=2.2e+02 Score=28.29 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHHHHhhhC------c-----chhhhhHHHHHHhh-ccCCCcchhHHHHHHHHHHHHHhchh----hhh
Q 002921 364 VWNLRKCSAAALDVLSNVFG------D-----EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCI----KGL 427 (865)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~------~-----~~~~~~~~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~----~~~ 427 (865)
.|..-+.+..+++.++...+ . +.+..+-..+...+ +-.+ ...-+.+.-.+..+++.+. +.+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rH---rGAfe~~~~~f~~lc~~l~~~~~~~l 136 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRH---RGAFESVYPGFTALCRRLWSSNNPEL 136 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHhcCCCchH
Confidence 67777778888888886542 1 12233333333333 2334 4455566666777766554 222
Q ss_pred hccHHHHHHHHHhccCCC-Ch---HHHHHHHH--HHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCH--------
Q 002921 428 YPHLSEIVAFLIPLLDDK-FP---LIRSISCW--TLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-------- 493 (865)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~-~~---~vr~~a~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~-------- 493 (865)
...-..-+..++..+.+. .. ..|+.|-. ++..+...-+ ......++..+..|++....+..
T Consensus 137 ~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~-----~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d 211 (255)
T PF10350_consen 137 SELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEP-----SNSRPLLHRTMKSLLEIAKSPSTQHEDEKSD 211 (255)
T ss_pred HHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCC-----CcchhHHHHHHHHHHHHhcCCcccccccccc
Confidence 222233444555555554 22 45665532 2222222211 12236788888999888776432
Q ss_pred HHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHHHHHhcc
Q 002921 494 RVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGK 531 (865)
Q Consensus 494 ~vr~~a~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~ 531 (865)
.-|..|+.+|..+.... +....+|+++.+..-++.+.+
T Consensus 212 ~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 212 LPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 46778889898888764 678888988877665555544
No 360
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=53.96 E-value=5.5e+02 Score=32.38 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=47.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHh
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 738 (865)
..+..|+..|+..+-.+..+++++|-++...... -..+++ ..++.+...+.+. +..+...++.+|-+++.+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSK----hkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSK----HKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhh----hhhhhhhHHHHHHHHhcC
Confidence 4667777777777778888888888888876642 233343 3566666666655 556666677777777643
No 361
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=53.71 E-value=69 Score=27.36 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=57.0
Q ss_pred HhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcc
Q 002921 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (865)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (865)
.++.|......|+....-++...- .-++++..+.+.+....+..|...+.++..++..+....... .
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f 71 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------F 71 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------H
Confidence 344455444555554444444322 224677777777776666778788888888888765432111 1
Q ss_pred hhhhHHHHHHHh----cCCCHHHHHHHHHHHHHHhc
Q 002921 178 INIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 178 ~~~l~~~l~~~l----~~~~~~vr~~a~~~l~~~~~ 209 (865)
...+.|.+...+ ...++.+|....+.+..|-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 72 GDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 123333322222 23456788888888888876
No 362
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=53.27 E-value=3e+02 Score=29.04 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=47.5
Q ss_pred hccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCC-CcchhhHHHHHHHHHHH--H-cCC--CHHHHHHHHH
Q 002921 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVLMGLLKR--I-LDT--NKRVQEAACS 501 (865)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~--l-~d~--~~~vr~~a~~ 501 (865)
..|+.++...+-+.++..++.......+++|.+.+++.+.+-. ......+..++..++=- + .+. .+.+....-.
T Consensus 64 ~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k 143 (373)
T PF14911_consen 64 LEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRK 143 (373)
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHH
Confidence 3455666666666666667788888899999999988765322 12233455555444321 1 221 3455555555
Q ss_pred HHHHHHHHh
Q 002921 502 AFATLEEEA 510 (865)
Q Consensus 502 al~~l~~~~ 510 (865)
.+..+++..
T Consensus 144 ~lpl~lqGl 152 (373)
T PF14911_consen 144 SLPLFLQGL 152 (373)
T ss_pred HHHHHHHHH
Confidence 555555543
No 363
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=51.98 E-value=79 Score=28.89 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCcCCh-----HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhc
Q 002921 113 VGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (865)
Q Consensus 113 ~a~~l~~i~~~~~~~~w-----~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (865)
++.++..+....-++.| ..++|.+..++.|........|+..|..+++.+++.+
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666644444556 6799999999999999999999999999999887654
No 364
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.99 E-value=5e+02 Score=30.94 Aligned_cols=80 Identities=9% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH---HhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHh
Q 002921 702 LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA---VKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (865)
Q Consensus 702 ~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (865)
+.+++......|.++ +...|-.|..++..-. ....+.+-|-+++.++.++..+.+.+ +-+...++.++..
T Consensus 801 v~kIl~r~~~~LS~e----~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~---~L~v~~a~~~i~~ 873 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHE----SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKD---PLIVQRAFSCIEQ 873 (1014)
T ss_pred HHHHHHHHHHHhcch----hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCc---hHHHHHHHHHHHH
Confidence 344555555666666 5667767766664432 23345678889999999999988764 5678889999988
Q ss_pred hhhhCCCccc
Q 002921 779 LAWVCPELVS 788 (865)
Q Consensus 779 l~~~~~~~~~ 788 (865)
|...+++.+.
T Consensus 874 m~~~sgDFv~ 883 (1014)
T KOG4524|consen 874 MGKYSGDFVA 883 (1014)
T ss_pred HHHHhhhHHH
Confidence 8877666443
No 365
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=50.90 E-value=2.1e+02 Score=31.69 Aligned_cols=99 Identities=13% Similarity=0.010 Sum_probs=64.8
Q ss_pred ccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--HHhHHh
Q 002921 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVS 218 (865)
Q Consensus 141 ~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~ 218 (865)
.+-++..|-.++..|+.-+..++..+..- ..+...--.|.|.+..||....+++..++...| +.+...
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~----------~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKI----------LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhh----------hcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34466778888888877777766544221 011122234677888999999999999998765 334455
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHh
Q 002921 219 MDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIE 250 (865)
Q Consensus 219 ~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~ 250 (865)
++.+...++..+. |.+. +|..+++.+..+-.
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 5566666666543 4445 88888888877654
No 366
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=49.26 E-value=4.4e+02 Score=29.80 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHHHHHH
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMM 527 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~ 527 (865)
......++..++......+..+|..|..++..+|... ...+.+.+..++-.++.
T Consensus 277 ~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~ 331 (661)
T KOG2256|consen 277 PKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVR 331 (661)
T ss_pred HHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455666666666666677889999999999888765 34455555555444443
No 367
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.08 E-value=3.4e+02 Score=28.43 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=80.9
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHh----hch-hhhHhhHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHHHHHH
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLAR----VCP-VHLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIGELA 736 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~----~~~-~~~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~~a~~~l~~l~ 736 (865)
.+...+.+.+++....+|..-+.++|+.+. ... ....++++.++..+.+...++.... +..+ .+++++-.+.
T Consensus 61 ~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~--~~a~~~l~~~ 138 (339)
T PF12074_consen 61 KVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGEL--VGAYVLLALS 138 (339)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccH--HHHHHHHHhc
Confidence 588889999999888899999999999886 211 2233444555555444444431100 0011 1111111100
Q ss_pred Hhccccc--------------cchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCccccc-HHHHHHHHHHH
Q 002921 737 VKARQEI--------------SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH-MEHFMQPWCIA 801 (865)
Q Consensus 737 ~~~~~~~--------------~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~ 801 (865)
......+ +|.+ -+-+.++..+.. ++...-.+.++..+....+....+. ...+-+.|+..
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~-----~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~l 212 (339)
T PF12074_consen 139 SWKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLAS-----EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYL 212 (339)
T ss_pred cccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCC-----HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 0000000 0000 000112222111 2223334445555554444433322 25566677776
Q ss_pred hccCC-ChHHHHHHHHHHHHHHhhCchh
Q 002921 802 LSMIR-DDTEKEDAFRGLCAMVKANPSG 828 (865)
Q Consensus 802 l~~~~-~~~~~~~~~~~l~~l~~~~~~~ 828 (865)
+-... ....|+.++..+..++..+|..
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 66643 6789999999999999998864
No 368
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=47.59 E-value=2.9e+02 Score=27.20 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=79.5
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhh-CCCcchh---hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--c----
Q 002921 442 LDDKFPLIRSISCWTLSRFSKFIVQDI-GHQNGRE---QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--A---- 511 (865)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~---~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~---- 511 (865)
++|+++.|...++.+.+.+....-.++ ......+ .+..+-..++..+.+.++.||..|...+..++-.. +
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 678899888888888877665543322 1111222 34455566777778889999999999998877532 0
Q ss_pred ------------------------cchhhhHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHhcccCCchhhHhhhh
Q 002921 512 ------------------------EELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (865)
Q Consensus 512 ------------------------~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 565 (865)
..+..--..++..|+..+.... ......++.++..+++. .|.|+..++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~------RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ------RPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH------SGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH------hhHHHHHHH
Confidence 0122233468888888887765 23444566666666654 246788888
Q ss_pred HHHHHHHhc
Q 002921 566 PPLIAKWQQ 574 (865)
Q Consensus 566 ~~l~~~l~~ 574 (865)
+.+...-.+
T Consensus 156 ~~ll~~~~~ 164 (239)
T PF11935_consen 156 PALLSFNPN 164 (239)
T ss_dssp HHHHHHHHS
T ss_pred HHHHhcCcc
Confidence 877665443
No 369
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=49 Score=35.68 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhchhhhhhccH--HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHH
Q 002921 410 EAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLK 486 (865)
Q Consensus 410 ~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~ 486 (865)
-+++.+|-++..... .+..-+ ..+.+.++..+.+|+..+...+...+..+.-.+.+. ...++ ..++..+..
T Consensus 407 ~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL-----~~~fL~~~iIdvl~~ 480 (743)
T COG5369 407 VAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL-----GAGFLEKSIIDVLVN 480 (743)
T ss_pred HHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccch-----HHHHHHhhHHHHHHH
Confidence 344555555554332 111111 237778888899988877776654444333222211 12222 456666777
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002921 487 RILDTNKRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (865)
Q Consensus 487 ~l~d~~~~vr~~a~~al~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 549 (865)
.+.+.+...|....|.+..+.-++. +.+.+....=++.++...+++..+++...++.+..+..
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 6666677888888998888877764 34566656668888899999999999999999988775
No 370
>PF14961 BROMI: Broad-minded protein
Probab=46.98 E-value=5.4e+02 Score=31.63 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=50.7
Q ss_pred HHHHHHhhccCCh-hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 133 LQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 133 l~~l~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
+..+.+.+....| .+|..|+..|....- ++.+.. ...+.+-..+..+|.|+|+.+...+++.........
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~--SDVls~-------E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPP--SDVLSC-------ESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCCh--hhcccc-------ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 4555566655554 788888888744322 122222 356778888889999999999999999999988765
Q ss_pred cH
Q 002921 212 PS 213 (865)
Q Consensus 212 ~~ 213 (865)
|.
T Consensus 234 pl 235 (1296)
T PF14961_consen 234 PL 235 (1296)
T ss_pred ch
Confidence 53
No 371
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=46.83 E-value=35 Score=23.22 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc
Q 002921 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (865)
...+++|+.+++.|..+++..|..+..+|+.+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356789999999998877888888888888887764
No 372
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=46.45 E-value=3.6e+02 Score=29.75 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=29.5
Q ss_pred hhHhhH--HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002921 697 HLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 697 ~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
.+..|+ ..+++.++..|..+. ..++..+|+..+..++....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~---~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSY---SSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 445555 347888888887443 56789999999999987654
No 373
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.09 E-value=29 Score=20.69 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHH
Q 002921 406 WKDREAAVLALGAIA 420 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~ 420 (865)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999873
No 374
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=43.38 E-value=2.3e+02 Score=24.95 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=52.0
Q ss_pred HHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-cc--
Q 002921 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EE-- 513 (865)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~~-- 513 (865)
.++..|+-+...++.+|-.++.. ...-+.+.+.+++.+.+++-..|......+..+++.+. ..
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~ 77 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKY 77 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccc
Confidence 34555665666677776555543 22335667788888888888889999999999998762 22
Q ss_pred hhhhHHHHHHHHHHHh
Q 002921 514 LAPRLEIILQHLMMAF 529 (865)
Q Consensus 514 ~~~~~~~i~~~l~~~l 529 (865)
-.+|...+-..|..++
T Consensus 78 ~~~Yv~~l~~dL~~Iv 93 (139)
T PF12243_consen 78 NYPYVSMLQRDLPRIV 93 (139)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4566665544444444
No 375
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=42.38 E-value=64 Score=34.88 Aligned_cols=136 Identities=12% Similarity=0.017 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhhC----cchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhcc
Q 002921 368 RKCSAAALDVLSNVFG----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l 442 (865)
-.++..+|..+++... .-.-..+.+.+.+.+.+++ -.....+...+....-.+..--..++. .++..+.+.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe---imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v 482 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE---IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV 482 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc---ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh
Confidence 4567788888877652 1122345566667777766 555554444444433322221112222 3566666666
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 002921 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (865)
...+..+|....|.+-.+.-.+... ......-..-+..++...+|+...|+..+...+.+|..+
T Consensus 483 ~sKDdaLqans~wvlrHlmyncq~~---ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 483 MSKDDALQANSEWVLRHLMYNCQKN---EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hcchhhhhhcchhhhhhhhhcCcch---hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 6667788888888887665554321 011222233467788888999999999999999998764
No 376
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=42.25 E-value=1.2e+02 Score=34.18 Aligned_cols=149 Identities=16% Similarity=0.089 Sum_probs=82.9
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHH---HHHHh---------hc--cCChhHHhHHHHHHHH
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQ---ALVTC---------LD--SNDINHMEGAMDALSK 157 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~---~l~~~---------l~--~~~~~~r~~al~~L~~ 157 (865)
+.+.+.+..-+.+.+..+|-.+|.-++.+++..+-..-..++. ...+. ++ ..++.+.++++..++
T Consensus 245 ~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a- 323 (993)
T COG5234 245 EVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA- 323 (993)
T ss_pred HHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-
Confidence 3444444444455678899999999999998763221123333 22221 11 123456666666665
Q ss_pred HHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC--------CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHH-HHHH
Q 002921 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ-GLFL 228 (865)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~-~l~~ 228 (865)
++...+-.+.+ .-+.+.+.++++- +...+|.+++-.+.++...-+....+.++..+- .+++
T Consensus 324 la~~~~id~~d----------~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~ 393 (993)
T COG5234 324 LAGAGLIDYSD----------CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQ 393 (993)
T ss_pred Hhhccccchhh----------hhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHh
Confidence 43332222211 1145555555542 245788888877777765433323333333222 2233
Q ss_pred -hhCCCCHHHHHHHHHHHHHHHhh
Q 002921 229 -LSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 229 -~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
.+-||+-.+|..+..++.+.+..
T Consensus 394 ~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 394 TALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred hhhcCchhhhhhHHHHHHHHHhcc
Confidence 56688899999999998887765
No 377
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=41.69 E-value=5.3e+02 Score=31.10 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=81.9
Q ss_pred hHHhHHHHHHHHHHhhchhh---cccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccc--HHhHHhH
Q 002921 146 NHMEGAMDALSKICEDIPQV---LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP--SALFVSM 219 (865)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~--~~~~~~~ 219 (865)
...+.++.+|..+++..++. +.++ ...-..++.+...+.. .++.++..|++.+.....+-+ ..+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe------~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-- 1811 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSE------ILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-- 1811 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccch------hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh--
Confidence 35667889999998877642 2221 1122345666666654 578899999998877765422 11111
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH--HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
...+..++.++. +-+..|..++.+|..+++. ++....-+. .++..+--.+....+..|.++.+.+..+...
T Consensus 1812 ~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1812 CNVLTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred hhHHHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 124455555554 3477899999999888764 333332222 1222222234456677899999998887554
No 378
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=41.31 E-value=4e+02 Score=27.10 Aligned_cols=184 Identities=13% Similarity=0.159 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhCcCCH-----hHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC---ChHHHHH
Q 002921 63 KSVEIRQAAGLLLKNNLRTAYKSMSP-----SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLELLQ 134 (865)
Q Consensus 63 ~~~~~R~~a~~~L~~~i~~~w~~~~~-----~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~w~~ll~ 134 (865)
.+-+.|.-++....+.++.+-..-.+ +....+...++.+-.+ .+.+.-..+..+....+++.-. .+.+-+.
T Consensus 91 l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~ 169 (342)
T KOG1566|consen 91 LEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEFLAKIILESTNFE 169 (342)
T ss_pred ccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHcchhHH
Confidence 44566666666665555443322211 1223444455554222 3555555555566555553110 1122233
Q ss_pred HHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH-HHHHhcCCCHHHHHHHHHHHHHHhcccc-
Q 002921 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQSPHTSLRKLSLGSVNQFIMLMP- 212 (865)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~vr~~a~~~l~~~~~~~~- 212 (865)
.....++.+.-++.--|+.++..+......... +.+.+..+.+++. ...++.+.+.-.|..+++.++.+...-+
T Consensus 170 ~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~va----Efl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N 245 (342)
T KOG1566|consen 170 KFFLYVQLPNFDIASDAFSTFKELLTRHKSVVA----EFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSN 245 (342)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhHHHHH----HHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCc
Confidence 334444444444444555555555544321100 0111223555666 4556677899999999999999875433
Q ss_pred -HHhHHhHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 213 -SALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 213 -~~~~~~~~--~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
.....++. .-+..++.++.+++.+++-.|+..+..++.+
T Consensus 246 ~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 246 SAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 22233332 4466777888898888988999888877764
No 379
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=40.89 E-value=7e+02 Score=29.80 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhchh--hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 407 KDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
..-.+|.+.++.-.-+.. -.+..+.-.+++.++..+.+++..|+...+-.+..+.+..
T Consensus 277 ~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~ 336 (1697)
T KOG3687|consen 277 PLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKY 336 (1697)
T ss_pred hhhcchhhhcchhhcccceeeeecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHH
Confidence 344455555543222222 1234455668888999999988877766555555555443
No 380
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=40.57 E-value=2.5e+02 Score=24.84 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCC
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (865)
-+.+...+...+.++++.||..|..|+-.+=. ..+.||-+.+ .+++++... -+.+..+...-+....
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L----~~Lldd~~f------rdeL~~f~~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNL----ENLLDDKTF------RDELTTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHH----HHHcCcchH------HHHHHhhcccCCcCCC
Confidence 35566667788889999999999988865422 3566665443 445554321 2333333333222222
Q ss_pred chhhHhhhhHHHHHHH
Q 002921 557 QPVYLDILMPPLIAKW 572 (865)
Q Consensus 557 ~~~~~~~l~~~l~~~l 572 (865)
.++.=+.+||.++..+
T Consensus 82 ~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 82 EEEHRPELMPVVLRIL 97 (141)
T ss_pred CHHHHhHHHHHHHHHH
Confidence 2345556666665554
No 381
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=39.91 E-value=1.3e+02 Score=25.42 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCC---cccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchh
Q 002921 752 LCLVPILKHSEELNKSLIENSAITLGRLAWVCPE---LVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSG 828 (865)
Q Consensus 752 ~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 828 (865)
..++..|...++ ...-.+.++.....|++..+. .+..+...++..++..=.......--..-.+++..++-..|..
T Consensus 6 rDll~~L~~~~~-~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 6 RDLLEYLRSDDE-DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHT-------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhcCcC-CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 334444543321 244557788888889987776 6777777887777654332221222233456677777888887
Q ss_pred hHhhHHHHHH
Q 002921 829 ALSSLVFMCR 838 (865)
Q Consensus 829 ~~~~l~~~~~ 838 (865)
+.+++...+.
T Consensus 85 ~~~~L~~~f~ 94 (114)
T PF10193_consen 85 VAPYLTEEFF 94 (114)
T ss_dssp HHH-HHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777665543
No 382
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=39.81 E-value=1.6e+02 Score=34.33 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCc
Q 002921 707 DIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (865)
Q Consensus 707 ~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (865)
..+.+.+... ....-.-|..++..++.++.+++..++..++..+..+|.+..+-...+..+....++.+-..+|..
T Consensus 59 ~R~~kdl~~~----r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy 134 (819)
T KOG1877|consen 59 ERCYKDLRRE----RFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSY 134 (819)
T ss_pred HHHHHHHHhc----cCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchh
Confidence 3444555544 223334577888999999999987789999999999998874312223333444444444444443
Q ss_pred ccccHHHHHHHHHHHhccC
Q 002921 787 VSPHMEHFMQPWCIALSMI 805 (865)
Q Consensus 787 ~~~~~~~~l~~~~~~l~~~ 805 (865)
... ++.|+..|++.....
T Consensus 135 ~~~-yd~Fi~kf~~l~he~ 152 (819)
T KOG1877|consen 135 HRN-YDFFISKFSSLCHER 152 (819)
T ss_pred hhh-hHHHHHHHHHHhhcc
Confidence 332 577888888877664
No 383
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=39.29 E-value=5.1e+02 Score=27.75 Aligned_cols=140 Identities=16% Similarity=0.041 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCCHHH--HHHHHHHHHHHhc--CCCcH----HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHh
Q 002921 18 CRLLEQQISPSSTAD--KSQIWQQLQQYSQ--FPDFN----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (865)
Q Consensus 18 ~~~l~~~~s~~~~~~--r~~a~~~L~~~~~--~p~~~----~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~ 89 (865)
..++..+++|+.+ . |-+|-..|.++.. +-+.+ ...+-+++. ....++.....+-+|.+..++- +.....
T Consensus 183 D~Llrmf~aPn~e-t~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-~~e~~e~aR~~~~il~~mFKHS-eet~~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLE-TSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-EREPVELARSVAGILEHMFKHS-EETCQR 259 (832)
T ss_pred HHHHHHHhCCchh-HHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-hcCcHHHHHHHHHHHHHHhhhh-HHHHHH
Confidence 3456667788776 4 7788777877542 22221 111222221 1333444334444455554431 110000
Q ss_pred -HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHH-----HHHHHHhhccCChhHHhHHHHHHHHHHh
Q 002921 90 -NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICE 160 (865)
Q Consensus 90 -~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~l-----l~~l~~~l~~~~~~~r~~al~~L~~l~~ 160 (865)
......+.++-..+..++.+-+.+|.++++++-+.....-..+ -+-|+.+..+.+.-.|..|+.+...++.
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 0011112222223445677777788899999876421111111 1223333444555666666666555543
No 384
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.54 E-value=41 Score=22.88 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc
Q 002921 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (865)
..+++|+.+++.|...+.. |..+..+++.+.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578899999999877666 888888888887764
No 385
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.52 E-value=2.4e+02 Score=23.81 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=45.2
Q ss_pred HHHHHHHhcC-C-CHHHHHHHHHHHHHHhccccH---HhHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhchhh
Q 002921 182 LPRLLQFFQS-P-HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (865)
Q Consensus 182 ~~~l~~~l~~-~-~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~ 255 (865)
+.-++..|.. . +++-...|+++...++...+. ++..+...++..++.+-+.-+ ++.-..-.+++..++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 4445555553 2 567778899999999987666 677777777777776543221 223334456677777777877
Q ss_pred hhhhHHH
Q 002921 256 LEPHLRN 262 (865)
Q Consensus 256 ~~~~l~~ 262 (865)
..+|+-.
T Consensus 85 ~~~~L~~ 91 (114)
T PF10193_consen 85 VAPYLTE 91 (114)
T ss_dssp HHH-HHH
T ss_pred HHHHHHH
Confidence 6665543
No 386
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=38.35 E-value=3e+02 Score=24.78 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHH-HHHHHHHHhccccccchHHHHHHHHHHHh
Q 002921 681 QSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNAC-WAIGELAVKARQEISPIVMTVVLCLVPIL 758 (865)
Q Consensus 681 ~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~il~~l~~~l 758 (865)
..++.++-.++.... ..|.|..-+++......+...+.. ....|.-+. ..+..+....++-+.||...+++....+|
T Consensus 39 ~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~-~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L 117 (153)
T PF08146_consen 39 SSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSS-GSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLL 117 (153)
T ss_pred HHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655 678999999998887755543211 223343333 34455677777888899999999988888
Q ss_pred cCc
Q 002921 759 KHS 761 (865)
Q Consensus 759 ~~~ 761 (865)
...
T Consensus 118 ~~~ 120 (153)
T PF08146_consen 118 KQF 120 (153)
T ss_pred HHh
Confidence 654
No 387
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=38.22 E-value=97 Score=29.36 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=58.4
Q ss_pred hHhhhhhhhHHHHHh--hhhhh-hhcccchHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhchhhhHhhH--HHHHHHHH
Q 002921 637 VVCCLDLLSGLAEGL--GSGIE-SLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAA 710 (865)
Q Consensus 637 ~~~al~~l~~l~~~~--~~~~~-~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~ 710 (865)
+-.++.++..++.+= +..|. ..++- .++|++...-++ .-+..|..+++.+|.++++....+..++ .+++|.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~Ahipl-flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPL-FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccce-eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 335666666666531 11111 12222 355555443333 3456789999999999999887776665 46999999
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHHHH
Q 002921 711 KQLNTPKLKETVSVANNACWAIGELA 736 (865)
Q Consensus 711 ~~l~~~~~~~~~~~~~~a~~~l~~l~ 736 (865)
+..+.. .+--+-.|+..++.++
T Consensus 196 rIme~g----SElSktvaifI~qkil 217 (315)
T COG5209 196 RIMELG----SELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHhh----hHHHHHHHHHHHHHHh
Confidence 888775 3344556666666665
No 388
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=4.6e+02 Score=26.64 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=58.4
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhcCcCCh----HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCC
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w----~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (865)
.+...+.++++.||..+...+..+... +...| ..+++.+.+++.+.++ -+-|..++..+.....-.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~------- 76 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR------- 76 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-------
Confidence 566778889999998876544444333 33333 4578889999988776 334556666665543110
Q ss_pred CCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 173 ~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
+..+..++..++..+.++....-..++..+.++.+
T Consensus 77 --~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 --KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred --HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 01223355555556666544444455555555544
No 389
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=36.70 E-value=2.3e+02 Score=32.34 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhcCchhhhhhHHHHHHHH-HHhhhhhCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH--
Q 002921 746 IVMTVVLCLVPILKHSEELNKSLIENSAIT-LGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMV-- 822 (865)
Q Consensus 746 ~~~~il~~l~~~l~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~-- 822 (865)
|-.+++..+..+...- ..+..++.+ +|.+..+++......+..++..+-..+. ..+..+.+..++.|+.+.
T Consensus 64 ~~~~iL~~L~~ca~~l-----P~K~~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~-~~~~n~ar~llrfL~dL~~~ 137 (759)
T KOG1104|consen 64 FKSKILDILNTCAVYL-----PEKITAYATLVGLLNLKNFNFGGEFVEYMIEELQESLK-SGNWNEARYLLRFLSDLSNC 137 (759)
T ss_pred HHHHHHHHHHHHHHHc-----ccchhHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHhcC
Confidence 4455555554443221 123334443 3555555554444445555555544444 356778888999999998
Q ss_pred hh-CchhhHhhHHHHHHHhhccCCCcc-----HHHHHHHHHhcCc
Q 002921 823 KA-NPSGALSSLVFMCRAIASWHVRIT-----LHLILLSVIFFGS 861 (865)
Q Consensus 823 ~~-~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 861 (865)
.. .++.+.+.+..++.+..+-..|.- +.-+...|-++|.
T Consensus 138 ~vl~~~sli~l~esl~~~~~e~~~Pqvr~D~~v~~vLs~lPw~g~ 182 (759)
T KOG1104|consen 138 HVLQADSLINLFESLLDAAIEENVPQVRRDYYVYCVLSSLPWFGR 182 (759)
T ss_pred CccChHHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHhccchhhh
Confidence 43 678899999999999988886442 6666666666663
No 390
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.68 E-value=7.6e+02 Score=28.67 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHh-hccCCc
Q 002921 217 VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY-FEAQLP 295 (865)
Q Consensus 217 ~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l-~~~~~~ 295 (865)
..+..+++.|-.+..++=..++..++..+..+....|+.=. .|+..+++-+.+++..+...|--.|..+ +.++.+
T Consensus 300 ~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 300 ILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 33445566666666677788999999999888877776422 3444555566777766666665555444 444443
No 391
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=35.52 E-value=3.4e+02 Score=24.59 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch
Q 002921 178 INIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 178 ~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 253 (865)
-+.++..+....+.+ +..+...|+..|.+++...+. .+..+ +.-++.+...+++++.+++..++..+..+....+
T Consensus 56 ~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 56 SDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred cHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 366777777777654 678999999999999875433 22211 1124566666677888899999988888876555
Q ss_pred h
Q 002921 254 S 254 (865)
Q Consensus 254 ~ 254 (865)
+
T Consensus 135 ~ 135 (160)
T PF11841_consen 135 D 135 (160)
T ss_pred h
Confidence 4
No 392
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=34.91 E-value=1e+03 Score=29.96 Aligned_cols=371 Identities=16% Similarity=0.157 Sum_probs=173.8
Q ss_pred ccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCC-HHHHH----HHHHHH
Q 002921 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQE----AACSAF 503 (865)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~----~a~~al 503 (865)
.+++.++-.+...+.+....+|.++-.+++++.+.+. ..|+..+++.+...+.-.. ..|.. ....++
T Consensus 560 ~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg--------~~yl~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~ 631 (1364)
T KOG1823|consen 560 RNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILG--------PKYLYFVIKELQTTLKRGFQVHVLSYTVHYLLGAM 631 (1364)
T ss_pred hcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3688888888888999999999999999999999875 4455666666554444221 11211 112222
Q ss_pred HHHHHH--hccchhhhHHHHHHHHHHHhcccchhh----H----HHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHh
Q 002921 504 ATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRN----L----RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (865)
Q Consensus 504 ~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~----~----~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (865)
...... +...+.+.+...++.++.......... . ....++...++...+.. -+..++.++.+.+.
T Consensus 632 ~~v~~~g~Ld~~~~~~i~i~~e~~fg~v~~ek~~~~~~~kEakgnks~d~yeil~~ivs~~-----~v~~ll~p~k~il~ 706 (1364)
T KOG1823|consen 632 KNVLKAGSLDTCLDPIIKIFNENLFGEVGKEKDSKEYESKEAKGNKSYDSYEILARIVSFD-----EVPTLLRPLKNILK 706 (1364)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhchhhcCCCchhHHHHHHHHhchh-----hhhHHHHHHHHHHh
Confidence 222211 123345555555555555554332211 0 01234444444433322 22344445555554
Q ss_pred cCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH-hhcc-cccCCCCCcch-----------hHhh
Q 002921 574 QLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA-KVDS-VAAGAQYDKEF-----------VVCC 640 (865)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~-~~~~~~~~~~~-----------~~~a 640 (865)
... ..+...++=+++..++..+..+=..-...++..+.+...+..+. ..+. ....+..|..+ +...
T Consensus 707 ~~~-~lk~~rkv~ellrr~~~gl~~n~~s~~~s~l~lc~~l~s~~~~~ie~~~k~~~k~~~d~~~~p~fl~~t~~~~~~~ 785 (1364)
T KOG1823|consen 707 ETD-SLKSQRKVDELLRRLLLGLNDNKSSLSSSILTLCYQLKSENYQLIEVETKTAVKDQFDLGLRPFFLPNTPKLALFF 785 (1364)
T ss_pred ccc-chhhhhhHHHHHHHHHhHhccCchhhHHHHHHHHHHHhccccccchhhhhccccccccccCCcccccccHHHHHHH
Confidence 432 22223456677777777665543334445555555544433220 0000 00000011111 1111
Q ss_pred hhhhhHHH-HHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcC-CCCC
Q 002921 641 LDLLSGLA-EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLN-TPKL 718 (865)
Q Consensus 641 l~~l~~l~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~ 718 (865)
++++..-- ++-+......+. .+++++..++......|...++.++-.+....-+....-..-+.....+... +...
T Consensus 786 ~~ll~~k~~~~~~~~~~~~l~--~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~~~~~~~gs~~~ 863 (1364)
T KOG1823|consen 786 LDLLRGKKTKSSDDSTVSQLV--PFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLLARKRHSGSPST 863 (1364)
T ss_pred HHHHhcccccCccHhHHHHHH--hHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcCCCcc
Confidence 12111111 111111222332 3888888888888888999998888888875422221111101111111111 1111
Q ss_pred CCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHH-HHHHHHhhhhhCCCcccccHHHHHHH
Q 002921 719 KETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIEN-SAITLGRLAWVCPELVSPHMEHFMQP 797 (865)
Q Consensus 719 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~l~~ 797 (865)
+.+...+..+++..++...+.... -+..++.+...+.... .+.-++. +..++.-++.+. ...|-+..+++.
T Consensus 864 --~~el~q~~~k~~t~lI~~~~s~~i--~e~~ls~ll~~~~sD~--~d~~rq~~~F~l~kAl~~r~--i~~~eL~~imd~ 935 (1364)
T KOG1823|consen 864 --NFELCQDSFKGFTALIAQVGSVKI--KEDVLSYLLARVESDI--SDPSRQGLAFSLLKALVSRK--IMLPELYEIMDK 935 (1364)
T ss_pred --cHHHHHHHHHHHHHHHHHhcceee--eHHHHHHHHHHhcccc--ccchhHHHHHHHHHHHHhcc--ccchHHHHHHHH
Confidence 567778888988888887765321 1223444443333221 1222222 222222222221 112334455555
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHh
Q 002921 798 WCIALSMIRDDTEKEDAFRGLCAMVK 823 (865)
Q Consensus 798 ~~~~l~~~~~~~~~~~~~~~l~~l~~ 823 (865)
.-..+-.....+.|..+...+...+.
T Consensus 936 v~e~~v~~~~~~~r~qcre~~~~~~~ 961 (1364)
T KOG1823|consen 936 VRETMVRNHSKEIRLQCREVFYSFLG 961 (1364)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHh
Confidence 55544443344455555555544444
No 393
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=34.64 E-value=1.9e+02 Score=27.58 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=49.5
Q ss_pred HHHHhhhCc-chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHH
Q 002921 376 DVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (865)
Q Consensus 376 ~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (865)
+.++..+.. ...+.+++....-.++.+ -|..|-+..+.+.-.-+. +....+++.+-..+.|.+..|+.+.-
T Consensus 104 D~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 104 DTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 344444432 445556665533333333 155555555554443321 23335777777889999999999999
Q ss_pred HHHHhhHHHH
Q 002921 455 WTLSRFSKFI 464 (865)
Q Consensus 455 ~~l~~l~~~~ 464 (865)
|+|.+++++.
T Consensus 176 WaLrq~~k~~ 185 (222)
T COG4912 176 WALRQIGKHS 185 (222)
T ss_pred HHHHHHHhhc
Confidence 9999999854
No 394
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.01 E-value=4.7e+02 Score=25.82 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHH
Q 002921 605 QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAF 684 (865)
Q Consensus 605 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~ 684 (865)
..++|.++++|..... ..+....+.+....-.++-+++.+-+ ..-+|.++..++.++. .-.
T Consensus 30 e~i~P~Ll~~Le~a~~---~~~e~~~~~~~~~~~~a~~LLaq~re------------~~A~~~li~l~~~~~~----~~~ 90 (249)
T PF06685_consen 30 EEITPELLKILEDAIE---RANELLDDEEYNLHFYALYLLAQFRE------------ERALPPLIRLFSQDDD----FLE 90 (249)
T ss_pred HHhhHHHHHHHHHHHH---hHHHhccCcchHHHHHHHHHHHHHhh------------hhhHHHHHHHHcCCcc----hHH
Q ss_pred HHHHH-HHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchh
Q 002921 685 ALLGD-LARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEE 763 (865)
Q Consensus 685 ~~l~~-l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~ 763 (865)
..+|+ +....+..+....+.=+..+.+.+.+++. +.-+|.+|+.+++.++...+..-...+.-+...+...+.....
T Consensus 91 ~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~--~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~ 168 (249)
T PF06685_consen 91 DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDA--DEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPS 168 (249)
T ss_pred HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCch
Q ss_pred hhhhHHHHHHHHHHhhhhhCCCcccccHHHHHH
Q 002921 764 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQ 796 (865)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 796 (865)
. .....++.+.-.+|..+.+.+...+.
T Consensus 169 ~------~~~~Lv~~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 169 F------LWGSLVADICDLYPEELLPEIRKAFE 195 (249)
T ss_pred H------HHHHHHHHHHhcCHHHhHHHHHHHHH
No 395
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=33.46 E-value=7.7e+02 Score=28.07 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHHHHHHHhcc
Q 002921 474 REQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGK 531 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~ 531 (865)
..+.+.++..|++.+.++ .+.+|..|+.=|++++..++ ..+...+..+..++...+..
T Consensus 341 ~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~~~y~~~ 404 (563)
T PF05327_consen 341 PELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWLHDYIDE 404 (563)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666665 45678888777888876653 23344445555555444443
No 396
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=32.56 E-value=3e+02 Score=23.08 Aligned_cols=46 Identities=4% Similarity=0.010 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 520 (865)
.+...++..+.+.+....+.-+..+.+.+.+++++++.....++..
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH
Confidence 3445677777777776667778899999999999886654444333
No 397
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=32.23 E-value=3.8e+02 Score=24.11 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC-----ChhHHHHHHHHHHHHHHhcCcCChHHH-----HH
Q 002921 65 VEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQ 134 (865)
Q Consensus 65 ~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~-----~~~vr~~~a~~l~~i~~~~~~~~w~~l-----l~ 134 (865)
+..++.........+-..|..-..+.++.+++..++.+.+. ...+-...-.++..+.+........++ -|
T Consensus 43 ~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~P 122 (152)
T PF12422_consen 43 PQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEP 122 (152)
T ss_pred ccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 34444444444555667788877777777777777755432 333333344455555544322233333 37
Q ss_pred HHHHhhccCChhHHhHHHHHHHHH
Q 002921 135 ALVTCLDSNDINHMEGAMDALSKI 158 (865)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~L~~l 158 (865)
.|...++.+++.+|..|..++...
T Consensus 123 iL~r~L~~~n~~Vr~na~~l~~~a 146 (152)
T PF12422_consen 123 ILWRALQAANAKVRSNAAALFLDA 146 (152)
T ss_pred HHHHHHcCCCcchhccHHHHHHHH
Confidence 788899999999999888777543
No 398
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=31.93 E-value=76 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
-++.+..+.+|..+..|..|+.+|+.++....
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 37888899999999999999999999887543
No 399
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=31.40 E-value=7.6e+02 Score=27.36 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHHHhhch
Q 002921 676 ASDVRQSAFALLGDLARVCP 695 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~ 695 (865)
++....-|..++..+..++.
T Consensus 103 d~PHaKIAsDi~SSiFLny~ 122 (851)
T KOG3723|consen 103 DTPHAKIASDIMSSIFLNYN 122 (851)
T ss_pred CCchhhHHHHHHHHHHHhcC
Confidence 33444445566666655543
No 400
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=31.34 E-value=6.9e+02 Score=26.86 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHH----HHhhhhh-CCCh
Q 002921 33 KSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLPCLG-AADR 107 (865)
Q Consensus 33 r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~----~ll~~l~-~~~~ 107 (865)
|.-|......+. ..+.+-.|+.++.+ ++....+|..|+.+|.+++.. +.++.+.. .++..-+ ....
T Consensus 166 ~evAq~LCD~iR-~~~~lD~Llrmf~a-Pn~et~vRve~~rlLEq~~~a-------eN~d~va~~~~~~Il~lAK~~e~~ 236 (832)
T KOG3678|consen 166 REVAQGLCDAIR-LDGGLDLLLRMFQA-PNLETSVRVEAARLLEQILVA-------ENRDRVARIGLGVILNLAKEREPV 236 (832)
T ss_pred HHHHHhhhhHhh-ccchHHHHHHHHhC-CchhHHHHHHHHHHHHHHHhh-------hhhhHHhhccchhhhhhhhhcCcH
Confidence 333444343444 34566677888775 366778899999999877643 22222211 1122112 2355
Q ss_pred hHHHHHHHHHHHHHHhcCcCChHH-----HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhH
Q 002921 108 HIRSTVGTIVSVVVQLGGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (865)
Q Consensus 108 ~vr~~~a~~l~~i~~~~~~~~w~~-----ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (865)
...+..+.++..++++.. ..-.. .+..++-.+...+|.....+..+|+.+.-.-+......+ .-+.+-
T Consensus 237 e~aR~~~~il~~mFKHSe-et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrm------veKr~~ 309 (832)
T KOG3678|consen 237 ELARSVAGILEHMFKHSE-ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRM------VEKRAA 309 (832)
T ss_pred HHHHHHHHHHHHHhhhhH-HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHH------HHhhhh
Confidence 666777888999988742 11122 244555556666665544444566655543332211110 001111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 183 PRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 183 ~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
.-++.+..+.+.-.|..||-+...++.
T Consensus 310 EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 310 EWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 222333334466677777766666553
No 401
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.57 E-value=1.5e+02 Score=24.52 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhchhhhhhccHH--HHHHHHHhc--cCCCChHHHHHHHHHHHhhHHHHh
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPL--LDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
|...+..++.++...... ...+. .-+|.++.+ +.+.+|.+|..|.+++-.+++...
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 445667777777655421 11111 125556654 467899999999999999988654
No 402
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=30.02 E-value=1.8e+02 Score=27.15 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc--CCCcchhHHHHHHHHHHHHHhchh--hhhhccHHHHHHHHHhcc
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA--SGDEAWKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLL 442 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l 442 (865)
+|......+..+...-|-..+-.++..+...-.. .+ ......++.|+..+...-. +.+.. -+..+..+..++
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~---~~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v~~i~~~L 167 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEED---IDIEHECLRCLKALMNTKYGLEAVLS-HPDSVNLIALSL 167 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTC---HHHHHHHHHHHHHHTSSHHHHHHHHC-SSSHHHHHHHT-
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchh---HHHHHHHHHHHHHHHccHHHHHHHHc-CcHHHHHHHHHH
Confidence 4444445555554444433333333333322211 22 5667778889888876332 11211 244678888999
Q ss_pred CCCChHHHHHHHHHHHhhH
Q 002921 443 DDKFPLIRSISCWTLSRFS 461 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~ 461 (865)
.++++.+|..++..|+.++
T Consensus 168 ~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 168 DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp -TTSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 403
>PHA01351 putative minor structural protein
Probab=29.65 E-value=7.3e+02 Score=28.20 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHhccccccchHHHHHHHHHHHhcCc
Q 002921 735 LAVKARQEISPIVMTVVLCLVPILKHS 761 (865)
Q Consensus 735 l~~~~~~~~~~~~~~il~~l~~~l~~~ 761 (865)
.+...+.++..+...++..+...+++.
T Consensus 127 ~~~~i~n~~~q~~~~~isd~~~~~~~~ 153 (1070)
T PHA01351 127 FFQNVANDFAQIISGVISDFLNFFGAN 153 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444445455555555555555443
No 404
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.64 E-value=5.3e+02 Score=24.67 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhcc
Q 002921 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (865)
Q Consensus 63 ~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~ 142 (865)
..|..|..|-..++ ..+.+..+.....+..+..++.-..|..+...+...-+.... +-++.+...+.+
T Consensus 24 ~~P~~R~lak~~~~--------~~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~----~~~~~~~~~l~~ 91 (208)
T cd07064 24 KTPERRALSKPFLK--------ESKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTP----EDLPLLEELITT 91 (208)
T ss_pred ChHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHcC
Confidence 34666666644432 222222333433444455566556777666555543332222 234444555544
Q ss_pred C-ChhHHhH-HHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHH
Q 002921 143 N-DINHMEG-AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (865)
Q Consensus 143 ~-~~~~r~~-al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 220 (865)
- ++..... +-.+++.+.... +.+.+.+.....+++.=+|+.|+-+...+.+.. ..+
T Consensus 92 ~~~Wd~vD~~~~~i~g~~~~~~----------------~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~ 149 (208)
T cd07064 92 KSWWDTVDSLAKVVGGILLADY----------------PEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTD 149 (208)
T ss_pred CchHHHHHHHHHHHhHHHHhCC----------------hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHH
Confidence 3 4555443 333333333211 344677888889999989998887655554432 122
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH
Q 002921 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (865)
Q Consensus 221 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~ 261 (865)
.+...+...+.+++.-+++++--+|..+....++.+..++.
T Consensus 150 ~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~ 190 (208)
T cd07064 150 LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVA 190 (208)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444445566776777777777888888888877666554
No 405
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=27.62 E-value=4.6e+02 Score=23.62 Aligned_cols=90 Identities=14% Similarity=0.284 Sum_probs=61.2
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhc------CcCChHHHHHHHHHhhccCC--------h---h------HHhHHHH
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG------GIAGWLELLQALVTCLDSND--------I---N------HMEGAMD 153 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~------~~~~w~~ll~~l~~~l~~~~--------~---~------~r~~al~ 153 (865)
.++..|.+....-|+.+.+-+..+.+.. +...|..++..|+.++..+. . . ....+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 3667788888888999999988888653 45689999999998874221 1 1 1223455
Q ss_pred HHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCC
Q 002921 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH 193 (865)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 193 (865)
+|..+++.....+.. .....++..+.+.+.+++
T Consensus 88 ~lR~~ve~~~~~~k~-------kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKR-------KTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhccc-------chHHHHHHHHHHHhhCCc
Confidence 666666655554432 345778888888888876
No 406
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.59 E-value=3.1e+02 Score=21.73 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=27.0
Q ss_pred CCCChhhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhc
Q 002921 7 WQPQEQGFNEICRLLEQQISP---SSTADKSQIWQQLQQYSQ 45 (865)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~s~---~~~~~r~~a~~~L~~~~~ 45 (865)
-+..++.+.+++++|....+- .- .+|++|++....+.+
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPR-NIRraA~~a~e~L~~ 48 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPR-NIRRAAEEAKEALNN 48 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccH-HHHHHHHHHHHHHhC
Confidence 345667788888888885431 22 389999999888865
No 407
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=27.07 E-value=4.8e+02 Score=23.67 Aligned_cols=96 Identities=16% Similarity=0.363 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhc--CcCChH----HHHHHHHHhhccC--ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhH
Q 002921 111 STVGTIVSVVVQLG--GIAGWL----ELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (865)
Q Consensus 111 ~~~a~~l~~i~~~~--~~~~w~----~ll~~l~~~l~~~--~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (865)
..++.++..+.... +.-.|+ .++..+...++.. ++.+.+.++.+|..++...+..... + .-+--+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~-V------~~evt~ 104 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQL-V------EQEVTL 104 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHH-H------hccCCH
Confidence 44444444444432 234675 4556666666544 5788889999999988765442211 0 013346
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccccH
Q 002921 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (865)
Q Consensus 183 ~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~ 213 (865)
+.+...|++++++++..|+-.+..+....++
T Consensus 105 ~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 105 ESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 7788888999999999999888888655443
No 408
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=9.9e+02 Score=27.30 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=46.9
Q ss_pred CChH--HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 127 AGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 127 ~~w~--~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
..|. .-+..+-+.+.+++..++.+|+..++-........ .+..+..+...+++++..+|..|+--|
T Consensus 409 ~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne------------~dpalALLsdyv~~~~s~~ri~aIlGL 476 (878)
T KOG2005|consen 409 QLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE------------CDPALALLSDYLQSSSSIHRIGAILGL 476 (878)
T ss_pred heecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccc------------cCHHHHHHHHhccCCCceeehHHhhhh
Confidence 3553 46778888888888788888887776655444322 145566777778888888888887666
Q ss_pred HHH
Q 002921 205 NQF 207 (865)
Q Consensus 205 ~~~ 207 (865)
+-.
T Consensus 477 gla 479 (878)
T KOG2005|consen 477 GLA 479 (878)
T ss_pred HHh
Confidence 544
No 409
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=26.61 E-value=1.2e+03 Score=28.31 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=54.3
Q ss_pred hhhhhhhHHHHHhhhhh-hh---hcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcC
Q 002921 639 CCLDLLSGLAEGLGSGI-ES---LVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLN 714 (865)
Q Consensus 639 ~al~~l~~l~~~~~~~~-~~---~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 714 (865)
..+++++-+.+.+|... .. ++. ..++|+... .+-.++..-+.++...+...|.++.+++..++-.++..+.
T Consensus 82 KTLEvY~yIFe~Ig~eTL~~e~n~w~-~Gl~pf~~~----~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e 156 (1618)
T COG5221 82 KTLEVYSYIFERIGRETLLKEFNFWT-LGLFPFSAH----CSILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGME 156 (1618)
T ss_pred hhhhHHHHHHHHHhHHHHHhhhhhhh-cchhhhhhh----hhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCcc
Confidence 45666666666666431 11 111 135555433 3455777777888888877888888888887777777766
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhc
Q 002921 715 TPKLKETVSVANNACWAIGELAVKA 739 (865)
Q Consensus 715 ~~~~~~~~~~~~~a~~~l~~l~~~~ 739 (865)
.+ ..+.-.-.+..+..+.++.
T Consensus 157 ~e----s~e~~~l~~hLi~tl~k~L 177 (1618)
T COG5221 157 FE----SGEYYSLRAHLIITLFKSL 177 (1618)
T ss_pred cc----ccchHHHHHHHHHHHHHhc
Confidence 65 2233333444555555554
No 410
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.34 E-value=1.3e+03 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhc
Q 002921 217 VSMDQYLQGLFLL-----SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (865)
Q Consensus 217 ~~~~~~l~~l~~~-----~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~ 291 (865)
..+..++..++.. ..|-++++|..+++-|+..+..+|..+-. ...+.++-=.+.|.+.+||..++.++..+.+
T Consensus 278 d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 278 DEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3455566666654 35778999999999999999999986531 2334444446788899999999999988877
Q ss_pred cCCchhhHHhhhhh
Q 002921 292 AQLPHENLKEFLPR 305 (865)
Q Consensus 292 ~~~~~~~~~~~~~~ 305 (865)
.......++-++..
T Consensus 356 ~~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSR 369 (1048)
T ss_pred ccccchHHHHHHHH
Confidence 63333344444443
No 411
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=26.26 E-value=5.1e+02 Score=23.72 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCChhhHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc
Q 002921 8 QPQEQGFNEICRLLEQQ-ISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (865)
Q Consensus 8 ~~~~~~~~~~~~~l~~~-~s~-~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~ 85 (865)
.|++...+++..++..- ... +.+ .++---+.=..+.++|...+.++.-.. =.++....-+..+| +.|..
T Consensus 5 ~P~~~~~~~L~~i~~~~p~~~L~~~-ek~llW~~R~~l~~~p~aL~~~L~sv~---W~~~~e~~e~~~lL-----~~W~~ 75 (166)
T cd00870 5 KPNSKERKELNKILKYPPTTKLTDE-EKDLIWKFRFYLTNNKKALTKFLKSVN---WSDEQEVKQALELM-----PKWAK 75 (166)
T ss_pred CcCHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHhHHHHhhCcHHHHHHhhhCC---CCCHHHHHHHHHHH-----hcCCC
Confidence 46666666666666542 111 222 333333322223457777665554331 22333333333333 57998
Q ss_pred CCHhHHHHHHHHHhhhhhC--CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCC
Q 002921 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND 144 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~ 144 (865)
++++. .+.+|.. ++..||..|...+..+ +.+.+-..++.|+|.++-+.
T Consensus 76 i~~~~-------aLeLL~~~f~~~~VR~yAV~~L~~~----sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 76 IDIED-------ALELLSPYFTNPVVRKYAVSRLKLA----SDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CCHHH-------HHHHcCccCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhcc
Confidence 87754 2555543 4788999887777752 34566778888888887653
No 412
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=25.41 E-value=3.7e+02 Score=27.47 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=35.4
Q ss_pred hhhhhHHHHHhhh-hhhhhcccchHHHHHHHHhc-CC--ChhHHHHHHHHHHHHHhhchhhhH
Q 002921 641 LDLLSGLAEGLGS-GIESLVAQSNLRDMLLQCCM-DD--ASDVRQSAFALLGDLARVCPVHLQ 699 (865)
Q Consensus 641 l~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~l~-~~--~~~vr~~a~~~l~~l~~~~~~~~~ 699 (865)
..++.+++.+... .-..|+-...+++.+...+- +. +..+.+.++.++|++++.....+.
T Consensus 118 a~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 118 ARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3344444544333 23334433356666665543 32 457999999999999998765443
No 413
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=25.37 E-value=1.7e+02 Score=22.32 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhh-Ccchhh--hhHHHHHHhhc-cCCCcchhHHHHHHHHHHHHHhc
Q 002921 368 RKCSAAALDVLSNVF-GDEILP--TLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEG 422 (865)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~ 422 (865)
.++|..+++.++..- |-.+++ .+++.+.+... ++. |..|-.++++|+-++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCC
Confidence 577889998887764 444443 46777776665 455 99999999999999864
No 414
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.05 E-value=1.4e+03 Score=28.48 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHHhhh-C----------------cc---hhhhhHHHHHHhhccCC------CcchhHHHHHHHHHHH
Q 002921 365 WNLRKCSAAALDVLSNVF-G----------------DE---ILPTLMPVIQAKLSASG------DEAWKDREAAVLALGA 418 (865)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~-~----------------~~---~~~~~~~~l~~~l~~~~------~~~~~~r~~a~~~l~~ 418 (865)
|..|.+|..++..+.... | .. .+|.+.|.+...+++++ ++.--.-+..+..|+.
T Consensus 843 W~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSr 922 (1417)
T KOG1810|consen 843 WAERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSR 922 (1417)
T ss_pred HhhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHh
Confidence 778888887777665443 3 01 24667777765554211 0001123344455555
Q ss_pred HHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 419 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
+-...+..-.--+...+|.+.++....+..+|..|..++-.+....
T Consensus 923 L~~~~~~~~~~~ls~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~ 968 (1417)
T KOG1810|consen 923 LYPSAPRSATLGLSVFVPFLQECTCQSNLKVREMASLVLLALVDAV 968 (1417)
T ss_pred hcccCCccccCCchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5443332111234457888889888888999999988887776654
No 415
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=24.74 E-value=4.3e+02 Score=22.36 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccc
Q 002921 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (865)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~ 513 (865)
.+..|......++....|++...- +...++..+.+.+....+.-|....+.+..++.++...
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~--------------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~ 66 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS--------------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRK 66 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhc
Confidence 344555556677777777665322 22356666666666554556777888888888877443
No 416
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.32 E-value=2.8e+02 Score=25.81 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=39.5
Q ss_pred ChhHHhHHHHHHHHHHhhch---hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002921 144 DINHMEGAMDALSKICEDIP---QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (865)
+......+++|+..+...-. ..+. .+..+..+...+.+++..+|..|++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~----------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS----------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC----------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc----------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44566778899988876432 1222 2667888999999999999999999998764
No 417
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=24.10 E-value=4.9e+02 Score=22.83 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.....+..+....+..|+.+..+=...++.+.+++.+.++.++..|-+......+.
T Consensus 69 ~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 69 LNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 33445555555555677776666667788888888877777888888777666554
No 418
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.03 E-value=1.4e+02 Score=27.45 Aligned_cols=77 Identities=19% Similarity=0.083 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (865)
+..+|.++.+.+-.++.-...+...+.. |-+ ......++.+-..+ +++.||..|...+..+. .
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~---W~~---------i~~~~aLeLL~~~f--~d~~VR~yAV~~L~~~s---d 100 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKR---WPK---------LKPEQALELLDCNF--PDEHVREFAVRCLEKLS---D 100 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHC---CCC---------CCHHHHHHHCCCcC--CCHHHHHHHHHHHHhCC---H
Confidence 4556667777665555444444443332 211 11123333333222 25889999888877543 3
Q ss_pred cchhhhHHHHHHHH
Q 002921 512 EELAPRLEIILQHL 525 (865)
Q Consensus 512 ~~~~~~~~~i~~~l 525 (865)
+.+..|++++++.|
T Consensus 101 ~eL~~yL~QLVQaL 114 (171)
T cd00872 101 DELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777888887765
No 419
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=23.92 E-value=7.1e+02 Score=24.82 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHhchh--hhhhccHH-HHHHHHHhccCCC---ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH
Q 002921 406 WKDREAAVLALGAIAEGCI--KGLYPHLS-EIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~--~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (865)
...+--++.++..+..... ..+..+.. .++..+....... +..+|.++..++-+++-...... ...+.-.+
T Consensus 124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~---~~~~~~~~ 200 (268)
T PF08324_consen 124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR---SDEEWQSE 200 (268)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT---S-CCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC---CChHHHHH
Confidence 5566667777776655322 23344555 5555555555554 78999999999888888765431 12333445
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHH
Q 002921 480 VLMGLLKRILD--TNKRVQEAACSAFATLE 507 (865)
Q Consensus 480 ~~~~l~~~l~d--~~~~vr~~a~~al~~l~ 507 (865)
++..+.+.+.. .++++.-+++.|+|+++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66667664433 47888889999999998
No 420
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.47 E-value=1.5e+03 Score=28.26 Aligned_cols=87 Identities=17% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChH
Q 002921 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (865)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 448 (865)
..+..+|..+.....+ ++..+....-+++ ..+-.+...++..+..... ...-....++..++-.+.|++..
T Consensus 488 ~lgr~AL~nLL~~N~d-----Ll~~~IdrCYss~---~~va~gYF~vlaev~~~~~-~~~~~~~~LL~L~Lfklg~~~~e 558 (1120)
T PF14228_consen 488 SLGRRALKNLLEHNPD-----LLDWVIDRCYSSS---PRVAEGYFTVLAEVFSERE-YPPCPFWELLNLVLFKLGDESSE 558 (1120)
T ss_pred HHHHHHHHHHHHhhHH-----HHHHHHHHhcCCC---hhHHHHHHHHHHHHHHcCC-CCCCCHHHhHHHHHHhhcCCcHH
Confidence 3455666665554332 3333333333344 5554554444444432111 12234567888888889999999
Q ss_pred HHHHHHHHHHhhHHHH
Q 002921 449 IRSISCWTLSRFSKFI 464 (865)
Q Consensus 449 vr~~a~~~l~~l~~~~ 464 (865)
||..|...|..+-...
T Consensus 559 IR~~A~qLL~~Le~R~ 574 (1120)
T PF14228_consen 559 IRSKAMQLLRALEERF 574 (1120)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998776543
No 421
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.89 E-value=1.3e+03 Score=27.30 Aligned_cols=530 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC------cHHHHHHhhhccc--CCCHHHHHHHHHHHHHHHHh
Q 002921 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPD------FNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRT 81 (865)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~------~~~~l~~il~~~~--~~~~~~R~~a~~~L~~~i~~ 81 (865)
+++.++++...+...-..- +.+.=+..-......+. ....+.++|.... ..++..|..=-..++....+
T Consensus 36 ~~e~V~~f~~~l~~wd~~r---I~~~L~~~~~~~~~~~~~~~~~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~ 112 (727)
T PF12726_consen 36 PEENVDQFFNMLDNWDIQR---ILPGLDKAKSILESIEPMTRSRALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSK 112 (727)
T ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhcc
Q ss_pred hhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHh---cCcCChH-----HHHHHHHHh-hccCChhHHhHHH
Q 002921 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL---GGIAGWL-----ELLQALVTC-LDSNDINHMEGAM 152 (865)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~---~~~~~w~-----~ll~~l~~~-l~~~~~~~r~~al 152 (865)
.--.++ ......+...|-++++..|.=+...+..+.+. ...+.|. ++...+... -...++.....--
T Consensus 113 ~~~~~~----~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW 188 (727)
T PF12726_consen 113 KPLKLP----KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFW 188 (727)
T ss_pred CCcccc----ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHH
Q ss_pred HHHHHHHhhchhhcccCCCCCCCcchhh-----hHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHH
Q 002921 153 DALSKICEDIPQVLDSDVPGLAECPINI-----FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (865)
Q Consensus 153 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (865)
..+..+++.+....-. ..+.. ++..+++-|.+.........++++..+.+..+..+...++.+-+..+
T Consensus 189 ~g~~~Il~~ld~~~i~-------~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~i 261 (727)
T PF12726_consen 189 SGFSLILRLLDKEQIT-------HSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVI 261 (727)
T ss_pred HHHHHHHHHccHHHHH-------HHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHH
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchh-hHHhhhhhH
Q 002921 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHE-NLKEFLPRL 306 (865)
Q Consensus 228 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~l 306 (865)
--.-=.++..+....++...=.......+...+.=+.+++-........++......++..-...+.... .-...+...
T Consensus 262 ld~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~~ 341 (727)
T PF12726_consen 262 LDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEARAACLRAG 341 (727)
T ss_pred HHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q ss_pred HHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh----
Q 002921 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---- 382 (865)
Q Consensus 307 ~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---- 382 (865)
+..++..+..- .+++....-..+.....+...+....
T Consensus 342 ~~~L~~~l~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (727)
T PF12726_consen 342 LDALLSTLRSF---------------------------------------NDNERSDFSTALITINDTRNLVSNYIIRDA 382 (727)
T ss_pred HHHHHHHHHhc---------------------------------------ccccccccchhHhhHHHHHHHHHhhhhhhh
Q ss_pred -------------CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHH
Q 002921 383 -------------GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLI 449 (865)
Q Consensus 383 -------------~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 449 (865)
...+....+..+...+.-.- -...+........ ......+..+.+.+...+...+...++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~a~~vi~~~l~~D~---~~l~~~~~~l~~~--~~~~~~~~~~~~~lW~~l~~~~~~~~~~l 457 (727)
T PF12726_consen 383 IIPAAKFKIEGWSNSSVSNSAMKVIRNALALDI---LSLCEESQALLRG--KPLQPAVSRISPNLWKALLKSLDSDNPDL 457 (727)
T ss_pred ccChhhccccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC--CCcCCcchhhhHHHHHHHHHhhcCCChHH
Q ss_pred HHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHH--HHHHHHHH
Q 002921 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLMM 527 (865)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~i~~~l~~ 527 (865)
-...+.++..+..... ........-++.-....++.-..++...+..++.+.+...+.+...+. .....+..
T Consensus 458 a~~lL~~~~~l~~l~~------~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s 531 (727)
T PF12726_consen 458 AKALLKSLSPLIGLEK------FPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWS 531 (727)
T ss_pred HHHHHHHHHHhccccc------cCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHh
Q ss_pred HhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHH
Q 002921 528 AFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPV 607 (865)
Q Consensus 528 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i 607 (865)
++=+++.+....+.+.++.+....|.. +-+..++..-.+..-. .+...+..+.+.-.-+-.|.+-.+
T Consensus 532 ~lfsp~~~l~qaA~~llk~~~d~~~R~----e~i~~ll~~~~~~tL~---------ai~~~l~~~~~~~~~~p~pr~vr~ 598 (727)
T PF12726_consen 532 LLFSPDDDLYQAAQDLLKQAFDVDGRL----EAIQALLQSNFSPTLS---------AINWSLRQLTKLKFFEPCPRMVRC 598 (727)
T ss_pred heeCCChHHHHHHHHHHHHHhcCCcHH----HHHHHHHHHhHHHHHH---------HHHHHHHHHHhhhhhcchHHHHHH
Q ss_pred HHHHHHHHH
Q 002921 608 FQRCINIIQ 616 (865)
Q Consensus 608 ~~~l~~~l~ 616 (865)
...+++.|.
T Consensus 599 ~~DIi~~Lc 607 (727)
T PF12726_consen 599 LMDIIEVLC 607 (727)
T ss_pred HHHHHHHHc
No 422
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=22.87 E-value=6.9e+02 Score=24.03 Aligned_cols=74 Identities=8% Similarity=-0.013 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 002921 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (865)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~ 205 (865)
-..|+++++......++.+...|..++...-.-.+.- .....+++.+-..+.|...-|+.+.-.+|.
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~-------------~~~~~if~i~E~~l~d~e~fV~KAigWaLr 179 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT-------------LDLLEIFEIIELLLGDKEFFVQKAIGWALR 179 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc-------------cchhHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4689999999966666666666655544332222211 123568889999999999999999999999
Q ss_pred HHhcccc
Q 002921 206 QFIMLMP 212 (865)
Q Consensus 206 ~~~~~~~ 212 (865)
.+..+.+
T Consensus 180 q~~k~~~ 186 (222)
T COG4912 180 QIGKHSN 186 (222)
T ss_pred HHHhhch
Confidence 9987543
No 423
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=22.55 E-value=9.6e+02 Score=25.58 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=26.2
Q ss_pred hccHHH-HHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 428 YPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 428 ~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
+.|+++ .+-.++..+.+.+|+-|..--.+|-++...+
T Consensus 171 K~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKf 208 (457)
T KOG2085|consen 171 KKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKF 208 (457)
T ss_pred HHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 345554 5566778888899999988777777665544
No 424
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=22.51 E-value=1.2e+03 Score=26.52 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=71.5
Q ss_pred HHHHHHHhccC----CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q 002921 433 EIVAFLIPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLE 507 (865)
Q Consensus 433 ~i~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~ 507 (865)
+++..+...++ ...+.++...+..++-++-..+. ...+.+.+++..+...+. .+...++...+..++.+.
T Consensus 434 ~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~-----l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg 508 (559)
T PF14868_consen 434 EIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL-----LDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLG 508 (559)
T ss_pred HHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhc
Confidence 34444555542 23466666666666544444332 245667788888877775 445568888777777666
Q ss_pred HHh-ccchh-hhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 508 EEA-AEELA-PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 508 ~~~-~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
+.. .+... +..+.+..-+-.++.+.++-....++++.+.+++...
T Consensus 509 ~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 509 KLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 542 22222 3455555555566778888888899999999887543
No 425
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=22.15 E-value=5.8e+02 Score=22.95 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhcc
Q 002921 474 REQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAE 512 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l-~d~~~~vr~~a~~al~~l~~~~~~ 512 (865)
..+...+-..+++.| .|..|.|+.++.+.++.+++..+.
T Consensus 71 ~~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 71 EENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 445566667777777 688999999999999988887654
No 426
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.51 E-value=5.2e+02 Score=22.13 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhh-CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH
Q 002921 371 SAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (865)
Q Consensus 371 a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 431 (865)
....+..|+... ...-...++..+...+...+..+|+...-|+..|.-+..+.++.+...+
T Consensus 20 ~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~ 81 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL 81 (125)
T ss_dssp -HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 445556666665 3356678888888888222223499999999999998887776554444
No 427
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=1.1e+03 Score=26.03 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=54.3
Q ss_pred CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCC--HhHHHHHHHHHhhhhh----CCChhHHHHHHHHHHHHH
Q 002921 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS--PSNQQYIKSELLPCLG----AADRHIRSTVGTIVSVVV 121 (865)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~--~~~~~~i~~~ll~~l~----~~~~~vr~~~a~~l~~i~ 121 (865)
+=...+.+.+. +.++...-.+...|+..++.--+++. +.-.+++|..-+..+. -.++..++.+|.+++.++
T Consensus 47 ~dLellVeriq---d~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~ 123 (881)
T COG5110 47 GDLELLVERIQ---DPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALC 123 (881)
T ss_pred ccHHHHHHHhh---CCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHe
Confidence 34556677765 57888889999999998876554433 2234677777666554 257788899999999999
Q ss_pred HhcCc
Q 002921 122 QLGGI 126 (865)
Q Consensus 122 ~~~~~ 126 (865)
..+..
T Consensus 124 m~yse 128 (881)
T COG5110 124 MVYSE 128 (881)
T ss_pred eeccc
Confidence 87643
No 428
>PLN03205 ATR interacting protein; Provisional
Probab=21.31 E-value=6.1e+02 Score=26.62 Aligned_cols=113 Identities=9% Similarity=0.033 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHH----HHHHHHHhc------CcCChHHHHHHHHHhhcc-CChhHHhHHHHHHHHHHh
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGT----IVSVVVQLG------GIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICE 160 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~----~l~~i~~~~------~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~L~~l~~ 160 (865)
+.+.+.|+.+-.-.+..+-..... ++..+.... |...|-.+++.+.|.... ....+|..|+.++..++-
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 345556666544343333222222 333333221 456788999998887644 456788889888888776
Q ss_pred hchhhcccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhc
Q 002921 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~~~~ 209 (865)
........+.-+ ...++..+-++|+.+ ...|++.|++.|.-+..
T Consensus 402 ssna~~eREkFG-----~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 402 STDAYTARESFV-----SKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred ccchhHHHHHhc-----chHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 544333222101 145677788888764 56899999988876653
No 429
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.10 E-value=9e+02 Score=24.76 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=42.8
Q ss_pred hHHHHHHHHhcCCChh-HHHHHHHHHHHHHhhchhhhH---hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 663 NLRDMLLQCCMDDASD-VRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~-vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.++..+...++...+. .-..|+.=++.+++.+++... .| ..-..+...+.++ +.+||-.|+.++-.++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky--g~k~~im~L~nh~----d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY--GVKEIIMNLINHD----DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh--hhHHHHHHHhcCC----CchhhHHHHHHHHHHHh
Confidence 3777777777765444 345577778888888774322 22 1222334445666 67899888888766653
No 430
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=20.84 E-value=6.9e+02 Score=23.32 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=60.9
Q ss_pred CChhhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc
Q 002921 9 PQEQGFNEICRLLEQQISPSST---ADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (865)
Q Consensus 9 ~~~~~~~~~~~~l~~~~s~~~~---~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~ 85 (865)
|+++..+++..++.. .|... +.|+.--+.=..+.++|+..+.++.-+. -.++....-+..+| ..|..
T Consensus 5 p~~~~~~~L~~i~~~--~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~---w~~~~~~~~~~~ll-----~~W~~ 74 (184)
T PF00613_consen 5 PNEEERDQLEAIINK--DPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVD---WWNPEEVSEAYQLL-----LQWPP 74 (184)
T ss_dssp --HHHHHHHHHHHTS---TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTST---TTSHHHHHHHHHHH-----HTSHC
T ss_pred cCHHHHHHHHHHHhc--CCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCC---CCchhhHHHHHHHH-----HcCCC
Confidence 666767777776643 23221 1222222211123457887776665332 23333333343333 56998
Q ss_pred CCHhHHHHHHHHHhhhhhC--CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC
Q 002921 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~ 143 (865)
++++. .+.+|.. +++.||..+...+..+ +.+..-.++|.|+|+++-+
T Consensus 75 ~~p~~-------AL~LL~~~f~~~~VR~yAv~~L~~~----~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 75 ISPED-------ALELLSPNFPDPFVRQYAVRRLESL----SDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp TTHHH-------HHHCTSTT---HHHHHHHHHHHCTS-----HHHHHHHHHHHHHHGGGS
T ss_pred CCHHH-------HHHHHHhhccHHHHHHHHHHHHHHc----CchHHHHHHHHHHHHheec
Confidence 88764 3566653 3688998877666542 2345567888999988765
No 431
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=20.79 E-value=7.7e+02 Score=23.79 Aligned_cols=93 Identities=9% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHHhcccCCchhh
Q 002921 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELNQPVY 560 (865)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (865)
.+.+.|.+.++.+|.+|...+..++...... -..-+..+-..|.-++-..+.+ ++....+-|+.+.......-..-.|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Q ss_pred HhhhhHHHHHHHhcC
Q 002921 561 LDILMPPLIAKWQQL 575 (865)
Q Consensus 561 ~~~l~~~l~~~l~~~ 575 (865)
+..++..+..-|...
T Consensus 84 ~~~f~~tm~rEW~~I 98 (217)
T PF05997_consen 84 LKAFWETMRREWDGI 98 (217)
T ss_pred HHHHHHHHHHHHccc
No 432
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=9.8e+02 Score=24.75 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=75.1
Q ss_pred HHHHHhhccCCCcchhHHHH---HHHHHHHHHhchh--hhh--hccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 392 PVIQAKLSASGDEAWKDREA---AVLALGAIAEGCI--KGL--YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~~---a~~~l~~l~~~~~--~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
..+...+.+.++ -..|.. ++..|..++..-+ +.+ ..-++.++........ +|.|-..++-+++-++-..
T Consensus 286 ~tl~~~i~d~n~--~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 286 DTLLRCIDDSNE--QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD--DPLVIQEVMAIISILCLRS 361 (461)
T ss_pred HHHHHHHhhhch--hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcC
Confidence 344455555332 445544 4445555553221 111 2334556665555554 4667777777776665543
Q ss_pred hhhhCCCcchhhHH-HHHHHHHHHHcC-C-CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchh
Q 002921 465 VQDIGHQNGREQFE-KVLMGLLKRILD-T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR 535 (865)
Q Consensus 465 ~~~~~~~~~~~~~~-~~~~~l~~~l~d-~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 535 (865)
++. ....++ ..-...++.|+- | ...|+..||+.+.+++....+.-.+.+..=++.|+..-...+..
T Consensus 362 pdh-----sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 362 PDH-----SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHET 430 (461)
T ss_pred cch-----HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCcc
Confidence 321 111221 223344555653 3 56799999999999998877776777777777776665544433
Done!