Query 002921
Match_columns 865
No_of_seqs 283 out of 2981
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 06:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 2.1E-84 7.3E-89 773.9 85.8 812 5-857 3-819 (852)
2 2bpt_A Importin beta-1 subunit 100.0 1.9E-58 6.6E-63 555.2 73.2 756 15-843 4-833 (861)
3 1qgr_A Protein (importin beta 100.0 6.1E-56 2.1E-60 534.5 72.2 753 16-842 2-848 (876)
4 1wa5_C Importin alpha RE-expor 100.0 2.3E-55 8E-60 527.8 63.7 764 14-845 4-868 (960)
5 2x19_B Importin-13; nuclear tr 100.0 2.5E-45 8.6E-50 444.3 62.8 756 10-837 19-908 (963)
6 2x1g_F Cadmus; transport prote 100.0 3.8E-46 1.3E-50 450.8 54.1 755 13-837 5-920 (971)
7 3m1i_C Exportin-1; heat repeat 100.0 2.3E-44 8E-49 435.9 68.0 790 11-847 12-1011(1049)
8 4hat_C Exportin-1; heat repeat 100.0 2.7E-41 9.2E-46 397.0 64.5 787 13-847 14-1011(1023)
9 4fdd_A Transportin-1; heat rep 100.0 1.9E-40 6.4E-45 395.3 66.6 693 11-800 44-803 (852)
10 1u6g_C TIP120 protein, CAND1; 100.0 1.6E-40 5.4E-45 411.8 58.0 743 15-827 6-812 (1230)
11 3ibv_A Exportin-T; karyopherin 100.0 1.2E-39 4.2E-44 383.4 57.7 730 13-847 4-899 (980)
12 2bpt_A Importin beta-1 subunit 100.0 1.7E-37 5.9E-42 372.9 74.8 689 28-804 54-836 (861)
13 1qgr_A Protein (importin beta 100.0 6.2E-38 2.1E-42 377.5 66.2 696 62-843 12-804 (876)
14 3gjx_A Exportin-1; transport, 100.0 4.7E-38 1.6E-42 366.1 60.5 786 13-846 26-1030(1073)
15 1ibr_B P95, importin beta-1 su 100.0 1.2E-38 4.2E-43 353.8 35.8 419 16-489 2-461 (462)
16 1u6g_C TIP120 protein, CAND1; 100.0 3.5E-36 1.2E-40 373.0 55.7 663 62-805 17-745 (1230)
17 1b3u_A Protein (protein phosph 100.0 1.4E-32 4.9E-37 315.1 47.9 572 95-780 12-586 (588)
18 1b3u_A Protein (protein phosph 100.0 5.4E-32 1.8E-36 310.3 48.7 560 62-736 21-586 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 4.1E-33 1.4E-37 337.5 41.1 528 11-574 7-682 (1204)
20 1wa5_C Importin alpha RE-expor 99.9 4.5E-21 1.5E-25 230.3 58.8 683 28-804 50-869 (960)
21 2x1g_F Cadmus; transport prote 99.9 1.9E-19 6.5E-24 217.5 59.5 685 15-791 85-916 (971)
22 2x19_B Importin-13; nuclear tr 99.9 8.9E-19 3E-23 211.9 63.3 677 15-783 103-896 (963)
23 1ibr_B P95, importin beta-1 su 99.9 2.6E-20 8.8E-25 206.2 36.6 395 62-530 12-461 (462)
24 3now_A UNC-45 protein, SD10334 99.8 4.5E-17 1.5E-21 183.4 47.7 678 11-782 5-783 (810)
25 2jdq_A Importin alpha-1 subuni 99.8 2.2E-17 7.4E-22 181.8 36.8 392 95-548 22-442 (450)
26 3m1i_C Exportin-1; heat repeat 99.8 3.3E-15 1.1E-19 181.0 58.8 399 406-824 427-879 (1049)
27 3now_A UNC-45 protein, SD10334 99.8 5.3E-16 1.8E-20 174.7 47.7 681 52-824 10-783 (810)
28 2jdq_A Importin alpha-1 subuni 99.8 3.7E-17 1.3E-21 180.0 33.2 364 126-552 12-393 (450)
29 1wa5_B Importin alpha subunit; 99.8 3.8E-17 1.3E-21 183.2 32.4 393 95-548 89-509 (530)
30 2vgl_B AP-2 complex subunit be 99.8 8.3E-16 2.9E-20 173.5 40.0 434 17-547 15-455 (591)
31 2vgl_B AP-2 complex subunit be 99.8 1.8E-16 6.3E-21 178.8 33.4 436 18-551 52-495 (591)
32 2z6g_A B-catenin; FULL-length, 99.8 1.8E-15 6.2E-20 175.9 40.3 528 95-741 117-667 (780)
33 1wa5_B Importin alpha subunit; 99.8 2.2E-16 7.4E-21 177.0 30.9 402 47-509 86-511 (530)
34 4b8j_A Importin subunit alpha- 99.8 1.3E-15 4.6E-20 170.7 34.9 389 95-547 76-494 (528)
35 1w63_A Adapter-related protein 99.7 7.7E-14 2.6E-18 157.8 43.8 473 62-692 81-577 (618)
36 4b8j_A Importin subunit alpha- 99.7 2.6E-15 9E-20 168.3 30.6 360 132-552 75-446 (528)
37 2z6h_A Catenin beta-1, beta-ca 99.7 1.3E-14 4.5E-19 166.2 34.2 519 94-716 15-549 (644)
38 2z6h_A Catenin beta-1, beta-ca 99.7 4E-14 1.4E-18 162.2 38.1 492 179-740 13-530 (644)
39 4hat_C Exportin-1; heat repeat 99.7 3.4E-13 1.2E-17 159.0 46.5 378 432-823 450-878 (1023)
40 3ibv_A Exportin-T; karyopherin 99.7 2.3E-12 8E-17 152.0 52.8 709 61-863 18-872 (980)
41 2z6g_A B-catenin; FULL-length, 99.7 3.5E-14 1.2E-18 165.0 35.4 453 26-551 161-665 (780)
42 1w63_A Adapter-related protein 99.7 1.7E-13 5.9E-18 155.0 38.7 441 19-548 74-576 (618)
43 1jdh_A Beta-catenin; beta-cate 99.7 1.4E-13 4.7E-18 154.8 34.9 494 93-735 17-528 (529)
44 1jdh_A Beta-catenin; beta-cate 99.7 1.1E-13 3.8E-18 155.6 33.6 451 26-547 28-528 (529)
45 2vgl_A Adaptor protein complex 99.6 4.3E-12 1.5E-16 142.7 43.1 553 12-689 11-586 (621)
46 3gjx_A Exportin-1; transport, 99.6 1.3E-10 4.4E-15 136.2 56.7 365 445-824 491-905 (1073)
47 3ul1_B Importin subunit alpha- 99.6 1.6E-13 5.5E-18 151.9 28.3 365 125-552 53-433 (510)
48 2qk1_A Protein STU2; STU2P, XM 99.6 1.1E-14 3.8E-19 143.1 16.4 206 389-607 16-234 (249)
49 3tpo_A Importin subunit alpha- 99.6 4.5E-13 1.5E-17 149.4 31.3 361 131-552 76-452 (529)
50 3ul1_B Importin subunit alpha- 99.6 9.9E-13 3.4E-17 145.6 32.6 380 17-507 59-477 (510)
51 2vgl_A Adaptor protein complex 99.6 2.7E-11 9.3E-16 136.2 44.3 516 109-735 55-587 (621)
52 2qk2_A LP04448P; mini spindles 99.6 9.9E-14 3.4E-18 137.4 19.4 215 385-616 11-228 (242)
53 3tpo_A Importin subunit alpha- 99.6 3.5E-12 1.2E-16 142.2 33.5 382 16-508 77-497 (529)
54 2qk1_A Protein STU2; STU2P, XM 99.5 1.1E-12 3.8E-17 128.8 18.2 194 363-564 28-234 (249)
55 2qk2_A LP04448P; mini spindles 99.5 2.3E-12 8E-17 127.4 20.3 188 363-566 27-221 (242)
56 3opb_A SWI5-dependent HO expre 99.3 2.9E-08 1E-12 109.7 43.0 547 127-761 128-759 (778)
57 4hxt_A De novo protein OR329; 99.3 4.4E-10 1.5E-14 112.2 24.4 245 181-517 3-250 (252)
58 3l6x_A Catenin delta-1; cateni 99.2 6.8E-09 2.3E-13 113.2 31.8 367 126-549 42-476 (584)
59 1xm9_A Plakophilin 1; armadill 99.2 1.4E-09 4.8E-14 118.2 26.3 378 133-548 4-448 (457)
60 4hxt_A De novo protein OR329; 99.2 3.5E-09 1.2E-13 105.6 25.5 239 132-465 3-244 (252)
61 4db8_A Armadillo-repeat protei 99.2 1.8E-09 6.1E-14 107.7 22.1 236 132-462 13-251 (252)
62 1oyz_A Hypothetical protein YI 99.2 1.4E-09 4.7E-14 110.4 21.4 252 133-504 25-278 (280)
63 1xm9_A Plakophilin 1; armadill 99.2 2.6E-09 9E-14 116.0 24.1 361 391-781 4-449 (457)
64 3l6x_A Catenin delta-1; cateni 99.2 1.3E-08 4.3E-13 111.1 29.1 386 371-781 28-476 (584)
65 4db8_A Armadillo-repeat protei 99.2 7.1E-10 2.4E-14 110.6 17.8 235 47-291 11-251 (252)
66 1oyz_A Hypothetical protein YI 99.2 2.5E-09 8.6E-14 108.4 21.4 253 180-544 23-277 (280)
67 2iw3_A Elongation factor 3A; a 99.1 1.4E-08 4.7E-13 116.4 25.8 274 237-576 30-307 (986)
68 4ady_A RPN2, 26S proteasome re 99.0 1.5E-05 5.3E-10 90.3 47.3 322 409-812 375-708 (963)
69 3a6p_A Exportin-5; exportin-5, 99.0 4.1E-06 1.4E-10 101.9 46.1 535 106-715 26-682 (1204)
70 2iw3_A Elongation factor 3A; a 99.0 7E-07 2.4E-11 102.5 36.8 340 98-508 19-379 (986)
71 3nmz_A APC variant protein; pr 99.0 6.4E-08 2.2E-12 103.1 25.4 352 132-551 33-452 (458)
72 3opb_A SWI5-dependent HO expre 99.0 2.2E-06 7.6E-11 94.9 38.1 373 86-509 285-729 (778)
73 3nmz_A APC variant protein; pr 99.0 5.9E-07 2E-11 95.7 32.0 352 14-463 31-451 (458)
74 4ady_A RPN2, 26S proteasome re 99.0 8.2E-05 2.8E-09 84.4 48.9 333 368-780 375-718 (963)
75 4db6_A Armadillo repeat protei 98.9 2.8E-08 9.6E-13 95.7 18.1 193 92-291 11-209 (210)
76 2db0_A 253AA long hypothetical 98.9 7.8E-07 2.7E-11 77.1 23.9 215 220-507 31-245 (253)
77 3ltj_A Alpharep-4; protein eng 98.9 5.6E-08 1.9E-12 92.7 18.9 184 220-506 13-196 (201)
78 3ltm_A Alpha-REP4; protein eng 98.9 5.2E-08 1.8E-12 93.9 18.8 189 179-465 18-206 (211)
79 3ltm_A Alpha-REP4; protein eng 98.9 3.1E-08 1E-12 95.5 16.5 190 10-253 17-206 (211)
80 4db6_A Armadillo repeat protei 98.9 1.2E-07 4E-12 91.3 20.0 196 179-462 11-209 (210)
81 3ltj_A Alpharep-4; protein eng 98.8 1E-07 3.5E-12 90.9 17.9 182 16-248 15-196 (201)
82 2db0_A 253AA long hypothetical 98.8 2.8E-06 9.5E-11 73.7 24.0 215 45-289 29-244 (253)
83 1xqr_A HSPBP1 protein; armadil 98.7 4.3E-07 1.5E-11 91.0 18.4 176 367-550 56-239 (296)
84 3nmw_A APC variant protein; AR 98.7 9E-07 3.1E-11 91.3 20.8 269 407-742 47-339 (354)
85 1vsy_5 Proteasome activator BL 98.7 4.5E-05 1.6E-09 89.1 37.0 684 93-857 133-961 (997)
86 1xqr_A HSPBP1 protein; armadil 98.6 3.1E-06 1E-10 84.8 20.8 134 367-509 98-239 (296)
87 3oc3_A Helicase MOT1, MOT1; re 98.6 8.8E-07 3E-11 91.2 16.6 204 62-290 185-403 (800)
88 3nmw_A APC variant protein; AR 98.6 9.2E-06 3.1E-10 83.8 24.5 225 193-464 97-336 (354)
89 2of3_A ZYG-9; multifunctional 98.5 7.7E-06 2.6E-10 78.8 19.5 178 231-465 56-239 (266)
90 3tjz_B Coatomer subunit gamma; 98.5 4.6E-06 1.6E-10 84.7 17.4 310 99-503 31-348 (355)
91 3b2a_A TON_1937, putative unch 98.4 1.3E-05 4.5E-10 73.2 16.9 199 363-593 17-217 (265)
92 3tjz_B Coatomer subunit gamma; 98.4 4.6E-05 1.6E-09 77.4 22.3 290 84-457 59-348 (355)
93 3b2a_A TON_1937, putative unch 98.3 1.8E-05 6E-10 72.3 15.4 185 94-295 34-222 (265)
94 4ffb_C Protein STU2; tubulin f 98.3 1.3E-05 4.5E-10 80.4 16.5 180 363-555 21-218 (278)
95 2of3_A ZYG-9; multifunctional 98.3 7.6E-05 2.6E-09 71.9 20.5 194 393-606 50-248 (266)
96 1vsy_5 Proteasome activator BL 98.1 8.1E-05 2.8E-09 86.9 20.4 171 371-553 782-970 (997)
97 4ffb_C Protein STU2; tubulin f 98.1 0.00016 5.5E-09 72.4 19.8 196 136-385 14-217 (278)
98 1te4_A Conserved protein MTH18 98.1 4.6E-07 1.6E-11 79.1 0.8 122 385-545 8-129 (131)
99 3oc3_A Helicase MOT1, MOT1; re 98.0 7.2E-05 2.5E-09 77.4 14.0 186 32-246 244-432 (800)
100 3grl_A General vesicular trans 97.9 0.0049 1.7E-07 66.6 27.7 200 93-292 21-242 (651)
101 3grl_A General vesicular trans 97.9 0.0073 2.5E-07 65.3 27.2 155 127-292 17-196 (651)
102 1te4_A Conserved protein MTH18 97.7 3.4E-05 1.2E-09 67.1 6.0 104 366-505 27-130 (131)
103 4gmo_A Putative uncharacterize 97.7 0.062 2.1E-06 61.1 34.2 150 53-213 39-218 (684)
104 3l9t_A Putative uncharacterize 97.6 0.0017 5.9E-08 60.2 14.7 146 92-259 70-216 (240)
105 3tt9_A Plakophilin-2; cell adh 97.5 0.0045 1.6E-07 58.8 16.7 153 389-549 8-180 (233)
106 3u0r_A Apoptosis inhibitor 5; 97.4 0.17 5.9E-06 52.2 31.1 281 13-318 27-325 (507)
107 1w9c_A CRM1 protein, exportin 97.3 0.11 3.9E-06 51.0 25.1 204 583-844 92-320 (321)
108 3u0r_A Apoptosis inhibitor 5; 97.1 0.35 1.2E-05 50.0 31.4 161 62-245 39-201 (507)
109 3tt9_A Plakophilin-2; cell adh 97.0 0.032 1.1E-06 53.0 17.3 174 132-315 9-204 (233)
110 3l9t_A Putative uncharacterize 97.0 0.021 7.2E-07 53.0 15.0 158 32-217 56-215 (240)
111 4gmo_A Putative uncharacterize 97.0 0.79 2.7E-05 52.0 39.7 152 132-292 36-215 (684)
112 1vsy_4 Proteasome activator BL 96.7 1.3 4.3E-05 50.5 31.9 121 86-212 328-458 (799)
113 1lrv_A LRV, leucine-rich repea 96.7 0.00099 3.4E-08 63.9 4.0 186 100-458 57-242 (244)
114 3gs3_A Symplekin, LD45768P; he 96.5 0.67 2.3E-05 44.4 23.2 187 66-257 30-250 (257)
115 1vsy_4 Proteasome activator BL 96.4 1.9 6.4E-05 49.2 45.5 537 85-693 16-688 (799)
116 1upk_A MO25 protein; transfera 96.4 0.77 2.6E-05 45.2 21.8 186 97-295 82-287 (341)
117 4atg_A TAF6; transcription, TF 96.0 0.32 1.1E-05 44.1 15.8 132 368-508 25-162 (196)
118 1lrv_A LRV, leucine-rich repea 96.0 0.0078 2.7E-07 57.7 5.7 133 62-285 61-193 (244)
119 3o2t_A Symplekin; heat repeat, 95.8 1.7 5.9E-05 44.2 22.2 192 68-264 42-270 (386)
120 4atg_A TAF6; transcription, TF 95.7 0.078 2.7E-06 48.0 10.8 123 676-803 59-181 (196)
121 3gs3_A Symplekin, LD45768P; he 95.1 2.4 8.2E-05 40.6 24.0 145 92-249 11-172 (257)
122 1upk_A MO25 protein; transfera 95.1 1.1 3.8E-05 44.1 17.3 184 62-251 89-284 (341)
123 1w9c_A CRM1 protein, exportin 93.7 4.7 0.00016 39.7 18.2 127 406-533 87-228 (321)
124 1lsh_A Lipovitellin (LV-1N, LV 93.5 11 0.00039 44.8 25.1 155 105-292 407-577 (1056)
125 3fga_B Serine/threonine-protei 92.8 9.6 0.00033 38.9 20.4 166 85-258 205-374 (403)
126 2npp_B PP2A, B subunit, serine 92.4 11 0.00039 39.1 19.8 113 664-784 285-402 (449)
127 3fga_B Serine/threonine-protei 92.3 11 0.00038 38.4 22.0 118 664-789 252-374 (403)
128 3ldz_A STAM-1, signal transduc 91.3 4.9 0.00017 34.3 13.3 79 476-554 39-119 (140)
129 1lsh_A Lipovitellin (LV-1N, LV 90.2 7.5 0.00026 46.3 18.3 175 49-254 392-580 (1056)
130 3o2t_A Symplekin; heat repeat, 90.2 18 0.0006 36.9 29.0 176 383-571 57-272 (386)
131 2npp_B PP2A, B subunit, serine 88.7 25 0.00085 36.6 21.9 160 86-257 239-406 (449)
132 3g2s_A C-terminal fragment of 88.5 1.3 4.5E-05 38.2 7.4 77 130-212 47-129 (149)
133 1mhq_A ADP-ribosylation factor 88.1 1.4 4.8E-05 38.1 7.4 77 130-212 37-119 (148)
134 3g2s_A C-terminal fragment of 88.0 10 0.00035 32.6 12.7 78 476-553 45-130 (149)
135 1x5b_A Signal transducing adap 87.7 4.1 0.00014 35.9 10.3 77 129-211 50-127 (163)
136 1juq_A ADP-ribosylation factor 87.0 8.9 0.0003 34.0 12.1 78 432-512 49-132 (171)
137 1mhq_A ADP-ribosylation factor 86.9 14 0.00048 31.8 13.0 78 476-553 35-120 (148)
138 1juq_A ADP-ribosylation factor 86.6 12 0.0004 33.2 12.7 78 476-553 47-132 (171)
139 3ldz_A STAM-1, signal transduc 86.4 1.5 5.1E-05 37.5 6.6 76 130-211 41-116 (140)
140 1ho8_A Vacuolar ATP synthase s 86.1 36 0.0012 35.6 26.2 57 406-463 419-477 (480)
141 1x5b_A Signal transducing adap 86.1 9 0.00031 33.6 11.6 79 476-554 49-130 (163)
142 3jxy_A Alkylpurine DNA glycosy 84.0 23 0.00079 33.3 14.4 160 32-219 43-205 (232)
143 3dad_A FH1/FH2 domain-containi 81.3 44 0.0015 33.0 17.9 145 137-292 124-287 (339)
144 2jak_A Serine/threonine-protei 81.2 50 0.0017 33.5 20.3 198 638-847 147-350 (392)
145 3s4w_B Protein FACD2, fanconi 77.9 1.3E+02 0.0043 36.2 30.3 121 425-554 392-512 (1323)
146 3dad_A FH1/FH2 domain-containi 77.5 59 0.002 32.2 17.1 108 396-510 125-233 (339)
147 1elk_A Target of MYB1; superhe 75.9 21 0.00071 31.1 10.1 77 128-210 50-131 (157)
148 2fv2_A RCD1 required for cell 75.7 20 0.00069 33.7 10.3 71 663-737 101-174 (268)
149 3qml_C Protein SLS1, nucleotid 75.4 23 0.00078 34.4 10.9 153 128-289 19-187 (315)
150 2b6c_A Hypothetical protein EF 75.4 45 0.0015 31.0 13.1 159 32-219 37-198 (220)
151 1dvp_A HRS, hepatocyte growth 75.2 17 0.00058 33.8 10.1 77 128-210 39-116 (220)
152 3zyq_A Hepatocyte growth facto 74.9 15 0.00053 34.3 9.7 78 128-211 42-120 (226)
153 2jak_A Serine/threonine-protei 72.5 87 0.003 31.8 18.6 185 520-730 174-360 (392)
154 2fv2_A RCD1 required for cell 69.8 75 0.0026 29.9 14.4 161 15-209 3-174 (268)
155 2b6c_A Hypothetical protein EF 69.0 24 0.00084 32.8 9.7 128 367-518 71-198 (220)
156 3zyq_A Hepatocyte growth facto 68.3 66 0.0023 29.9 12.4 77 477-553 43-122 (226)
157 3ebb_A Phospholipase A2-activa 65.8 1.1E+02 0.0036 30.1 14.9 99 406-508 162-263 (304)
158 1vdy_A Hypothetical protein (R 65.2 36 0.0012 28.7 8.8 46 664-709 50-95 (140)
159 1sz9_A PCF11 protein; RNA poly 65.1 64 0.0022 27.4 12.7 86 117-210 30-115 (144)
160 3jxy_A Alkylpurine DNA glycosy 64.8 49 0.0017 31.0 10.9 138 99-261 67-206 (232)
161 1ho8_A Vacuolar ATP synthase s 62.3 1.6E+02 0.0053 30.9 30.6 58 445-508 417-476 (480)
162 1elk_A Target of MYB1; superhe 62.1 78 0.0027 27.4 12.1 78 476-553 50-134 (157)
163 4fu3_A Regulation of nuclear P 62.1 69 0.0024 26.8 10.9 64 434-511 8-71 (135)
164 1vdy_A Hypothetical protein (R 60.5 28 0.00094 29.4 7.2 85 373-460 30-128 (140)
165 1dvp_A HRS, hepatocyte growth 59.9 1.1E+02 0.0037 28.3 13.0 78 476-553 39-119 (220)
166 4flb_A Regulation of nuclear P 57.2 83 0.0029 26.2 13.0 67 431-511 6-72 (132)
167 3d9j_A RNA-binding protein 16; 53.7 1E+02 0.0035 26.2 11.2 38 475-512 38-75 (145)
168 3rru_A TOM1L1 protein; structu 47.8 30 0.001 29.8 5.6 77 130-212 52-133 (152)
169 3rru_A TOM1L1 protein; structu 47.7 1.3E+02 0.0046 25.7 9.7 78 476-553 50-134 (152)
170 1sz9_A PCF11 protein; RNA poly 47.3 1.3E+02 0.0045 25.5 11.3 74 474-547 38-112 (144)
171 3d9j_A RNA-binding protein 16; 43.7 1.5E+02 0.0051 25.1 10.1 106 98-208 10-118 (145)
172 1t06_A Hypothetical protein; s 36.6 89 0.003 29.3 7.6 74 389-465 108-183 (235)
173 3ebb_A Phospholipase A2-activa 32.2 3.6E+02 0.012 26.2 17.4 146 704-858 147-302 (304)
174 4flb_A Regulation of nuclear P 31.4 2.2E+02 0.0075 23.5 11.2 88 477-574 6-93 (132)
175 2nsz_A Programmed cell death p 30.7 2.2E+02 0.0077 23.4 8.3 109 9-123 2-115 (129)
176 2ion_A PDCD4, programmed cell 27.4 2.6E+02 0.0088 23.9 8.3 108 8-123 3-117 (152)
177 1t06_A Hypothetical protein; s 27.0 3.1E+02 0.011 25.4 9.6 78 44-124 104-182 (235)
178 3eg5_B Protein diaphanous homo 24.8 4.4E+02 0.015 26.7 10.9 58 144-211 133-193 (383)
179 3eg5_B Protein diaphanous homo 23.4 5.3E+02 0.018 26.1 11.2 99 193-292 133-247 (383)
180 4f52_E Glomulin; cullin-ring E 21.0 8.2E+02 0.028 26.5 13.0 103 49-159 366-484 (596)
181 3qml_C Protein SLS1, nucleotid 20.9 5.8E+02 0.02 24.8 14.5 150 671-826 78-250 (315)
182 2km4_A Regulator of TY1 transp 20.9 3.7E+02 0.013 22.5 15.3 65 433-511 6-72 (142)
183 3ut4_A CTHE_2751, putative unc 20.4 3.7E+02 0.013 22.3 12.1 100 86-207 24-128 (134)
184 2rg8_A Programmed cell death p 20.0 4.3E+02 0.015 22.9 9.0 105 13-124 9-117 (165)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.1e-84 Score=773.93 Aligned_cols=812 Identities=46% Similarity=0.846 Sum_probs=730.5
Q ss_pred CCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC
Q 002921 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (865)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~ 84 (865)
|+|+|+++.++++.++|++++|||++ +|++||++|++++++|+|+.+|..++....+.++.+|++|++.|||.+.++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC
Confidence 88999999999999999999999999 99999999999999999999999999742478899999999999999999999
Q ss_pred cCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
.++++.+..||+.++++|.++++.+|+.++.+++.|++.++++.||++++.+.+.+.++++.+|++++.+|+.+++..++
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999877
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 244 (865)
.+.... +...++.++|.++++++++++.+|..|++++..++...+..+...++.+++.++..+.++++++|..++.+
T Consensus 162 ~~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDV---LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCS---SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred Hhchhh---hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 654321 12457889999999999999999999999999998877777777888899999999999999999999999
Q ss_pred HHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhh
Q 002921 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~ 324 (865)
|..+++..++.+.+|++.+++.++..+++.++++|..|+++|..+++.+..++.++|++..++|.++..|.+.++|++++
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999999999999999999999999999998755667788999999999999999998887776
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCc
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 404 (865)
+.++++ |+++||....|++|++|..+++.++...|+.+++.+++.+.+.+++++
T Consensus 319 ~~d~~e------------------------d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-- 372 (852)
T 4fdd_A 319 KGDVEG------------------------GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE-- 372 (852)
T ss_dssp HC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS--
T ss_pred cCCccc------------------------ccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--
Confidence 544211 111222236799999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHH
Q 002921 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (865)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 484 (865)
|+.|++|+.++|.+++++++.+.++++.+++.+++.++|+++.||.+|+|+++++++++... ....++..+++.+
T Consensus 373 -~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~L 447 (852)
T 4fdd_A 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTEL 447 (852)
T ss_dssp -HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999988642 3567899999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhh
Q 002921 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (865)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l 564 (865)
++.+.|+++.||..|+++++++++.++..+.||++.+++.+...+++.+.+....++++++.++..+|+.+..++|++.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999999888999999999999999988877777788999999999999888777899999
Q ss_pred hHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH----hhcccccCCCCCcchhHhh
Q 002921 565 MPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA----KVDSVAAGAQYDKEFVVCC 640 (865)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~a 640 (865)
+|.+++.|....+.++.+..+++|++.++..+|..|.||++++++.+++.+.+.... ..+++. .++++.+++..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~-~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ-YEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cCCCcchHHHHH
Confidence 999999988877666766789999999999999999999999999999888765321 111111 122366788899
Q ss_pred hhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCC
Q 002921 641 LDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (865)
Q Consensus 641 l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 720 (865)
+++++.++..+|+++.+++..+.+++.+..++++.++++|+.++.++++++..++..+.+|++.++|.+.+.+..+
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~---- 682 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE---- 682 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT----
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc----
Confidence 9999999999999999998222499999999999999999999999999999999999999999999999999776
Q ss_pred chhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHH
Q 002921 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI 800 (865)
Q Consensus 721 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 800 (865)
+..+|.+|++++|.++.+.+.++.||+..+++.+++++.++. .+..++++++.++|||...+|+.+.||++++++.|+.
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~ 761 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCT 761 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHH
Confidence 679999999999999999999999999999999999998874 4678999999999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccCCCcc-HHHHHHHHH
Q 002921 801 ALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHVRIT-LHLILLSVI 857 (865)
Q Consensus 801 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 857 (865)
.|+..+|.++|..+++++|.++..||+.+.+++..|+.++++|.++++ ++++|++++
T Consensus 762 ~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 819 (852)
T 4fdd_A 762 SLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKIL 819 (852)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 999999998
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.9e-58 Score=555.22 Aligned_cols=756 Identities=17% Similarity=0.244 Sum_probs=636.8
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC--CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh----------
Q 002921 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT---------- 81 (865)
Q Consensus 15 ~~~~~~l~~~-~s~~~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~---------- 81 (865)
+++.++|.++ .+||++ +|++|+++|++++++ |+++..|++++.+ .+.++++|++|++.||+.+.+
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 5799999999 999999 999999999999874 8999999999974 356899999999999999754
Q ss_pred -hhCc-CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccC-ChhHHhHHHHHHHH
Q 002921 82 -AYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (865)
Q Consensus 82 -~w~~-~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~ 157 (865)
+|.. ++++.+..||+.+++.|.++++.+|++++.+++.|++.+++ +.||++++.|.+.+.++ ++..|++++.++..
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4676 99999999999999999999999999999999999999866 69999999999999998 99999999999999
Q ss_pred HHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhccccHHhHH--hHHHHHHHHHHhhCCC
Q 002921 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (865)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ 233 (865)
+++.++.... .+..+.+.+++.+.+.+.++ ++.||..|++++..++.+....+.. ..+.+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCChhhh-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC
Confidence 9997664321 12356789999999999997 8999999999999998765433211 1234677777778888
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCC---------------chh
Q 002921 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (865)
Q Consensus 234 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~---------------~~~ 297 (865)
++++|..++++|..+++..++.+.+++. .+++.++..+.+.+++++..++++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 9999999999999999999999999999 999999989999999999999999999877521 122
Q ss_pred hHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 002921 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (865)
Q Consensus 298 ~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~ 377 (865)
.+++++..++|.++..|...++| ++ +++|++|.++..+++.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d------------------------------------~~---d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNED------------------------------------PE---DDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-------------------------------------C---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------------------------------cc---cccCcHHHHHHHHHHH
Confidence 45677788888888777642110 11 1348899999999999
Q ss_pred HHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHHHH
Q 002921 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (865)
Q Consensus 378 l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (865)
++..+|+.+++.+++.+.+.+++.+ |+.|++|+.+++.+++++. +.+.++++.+++.+++.++|+++.||.+++|+
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHccHhHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999899999999999999888 9999999999999999875 67788999999999999999999999999999
Q ss_pred HHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHHHHHHHhccc
Q 002921 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~ 532 (865)
+++++.++.... ...+++..+++.+++.++|+ +.||..||+++..+++.++ ..+.||++.+++.++..+++.
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhhhc---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 999999886421 13568899999999999986 9999999999999999875 668899999999999999854
Q ss_pred c--hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC--------CCC----Ccch-hhHHHHHHHHHHHhc
Q 002921 533 Q--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNS----DKDL-FPLLECFTSIAQALG 597 (865)
Q Consensus 533 ~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~----~~~~-~~~~~~l~~l~~~~~ 597 (865)
+ ..++..++++++.++...|..+. +|+..++|.+++.+... .+. ...+ ..++++++.++..+|
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhH--HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 56777899999999999998765 89999999999988752 100 1122 468899999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCc-chhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCC
Q 002921 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK-EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA 676 (865)
Q Consensus 598 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 676 (865)
..+.||++.+++.+++.+... +. .++..++.+++.++..+|..+.+|++. ++|.+..++++.+
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~--------------~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKK--------------DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVD 652 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHST--------------TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHHHccC--------------CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhcccc
Confidence 999999999999998887642 22 678889999999999999999999987 9999999998888
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 002921 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (865)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~ 756 (865)
+.+|..++.+++.++...+..+.||++.+++.+.+.+.+.+. +.++|..++.++|.++...+..|.||++.+++.+.+
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA--RRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA 730 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC--CTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccc--cHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987522 368999999999999999999999999999999999
Q ss_pred HhcCch--------hhhhhHHHHHHHHHHhhhhhCC---CcccccHHHHHHHHHHHhccC--C-ChHHHHHHHHHHHHHH
Q 002921 757 ILKHSE--------ELNKSLIENSAITLGRLAWVCP---ELVSPHMEHFMQPWCIALSMI--R-DDTEKEDAFRGLCAMV 822 (865)
Q Consensus 757 ~l~~~~--------~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~l~~~~~~l~~~--~-~~~~~~~~~~~l~~l~ 822 (865)
.+.... +....++..++.+++.++...+ +.+.+|++.+++.+...+.+. . +...|..++.++..+.
T Consensus 731 ~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 887421 1124577888888888876543 557889999998888877542 1 6678999999999999
Q ss_pred hhC-chhhHhhHH-HHHHHhhcc
Q 002921 823 KAN-PSGALSSLV-FMCRAIASW 843 (865)
Q Consensus 823 ~~~-~~~~~~~l~-~~~~~~~~~ 843 (865)
... +..+.++++ .+++.+.+.
T Consensus 811 ~~~~g~~~~~~~~~~~~~~ll~~ 833 (861)
T 2bpt_A 811 AMFPDGSIKQFYGQDWVIDYIKR 833 (861)
T ss_dssp HHCTTSTTGGGTTCHHHHHHHHH
T ss_pred HHcCCchHHHHHhcHHHHHHHHH
Confidence 976 566666666 666665553
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=6.1e-56 Score=534.48 Aligned_cols=753 Identities=20% Similarity=0.264 Sum_probs=620.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHH-----------Hhh
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i-----------~~~ 82 (865)
++.++|+++.+||++ +|++|+++|+++.++ |+++..|++++.+ .+.++.+|++|++.||+.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 478899999999999 999999999999875 8999999999984 3468999999999999987 467
Q ss_pred hCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccC--ChhHHhHHHHHHHHHH
Q 002921 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (865)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~r~~al~~L~~l~ 159 (865)
|..++++.+..+|+.+++.|.++++.+ +.++.+++.|++.+++ ..||++++.+.+.+.++ ++.+|++++.+|..++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888 9999999999998755 89999999999999998 8999999999999999
Q ss_pred hhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhccccHHhHHh--HHHHHHHHHHhhCCCCH
Q 002921 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (865)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 235 (865)
+.+.... +..+.+.+++.+.+.+.++ +..+|..|++++..++.+.+..+... ...+++.+...+.+.+.
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCHhh-------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 8764221 1246789999999999987 78999999999999987755432211 12367777777788889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccC-------------------Cc
Q 002921 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (865)
Q Consensus 236 ~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~-------------------~~ 295 (865)
++|..++++|..+++.+++.+.+++. .+++.++....+.+++++..++++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 99999999999999999999999999 99999999888889999999999999987641 11
Q ss_pred hhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 002921 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (865)
Q Consensus 296 ~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (865)
....++++..+++.+++.+...++ | + ++.+|++|.+|..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~---~~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-D---DDDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-C---CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccc-----------------------------------c-c---cccccHHHHHHHHHH
Confidence 234455667777777766653211 0 1 113589999999999
Q ss_pred HHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHH
Q 002921 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (865)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (865)
+.++...|+.+++.+++.+.+.+++++ |+.|++++.+++.+++++. +.+.++++.++|.+++.++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCcHhhHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998889999999999999888 9999999999999999887 567788999999999999999999999999
Q ss_pred HHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc--------------cchhhhHHH
Q 002921 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (865)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~--------------~~~~~~~~~ 520 (865)
+++++++++++... ...+++..+++.++..+.|+ +.||..+++++..+++.++ +.+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHhCchhc---ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 99999999876421 13578999999999999985 9999999999999998865 348899999
Q ss_pred HHHHHHHHhcccc---hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC--------CCCCc----ch-hh
Q 002921 521 ILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDK----DL-FP 584 (865)
Q Consensus 521 i~~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~----~~-~~ 584 (865)
+++.+...+...+ ...+..++++++.++...|.... +|+..++|.+++.+... +++++ .+ ..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH--HHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH
Confidence 9999999998653 24556799999999999998765 89999999999988752 22332 22 45
Q ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccch
Q 002921 585 LLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (865)
Q Consensus 585 ~~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (865)
++.+++.++..+| ..+.||++.+++.+++.+..... ...++..++.+++.++..+|..+.+|++.
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-- 649 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG------------SGGVQEDALMAVSTLVEVLGGEFLKYMEA-- 649 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHH--
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC------------CCCccHHHHHHHHHHHHHHHhhHHHHHHH--
Confidence 7889999999999 89999999999999988875310 13567789999999999999999999987
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002921 664 LRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE 742 (865)
Q Consensus 664 l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 742 (865)
++|.+..++.+. +..+|..|+.+++.++...+..+.|+++.+++.+.+.+.+.+. +.++|.++++++|.++...+.+
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV--HRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTS--CGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccc--cHHhhHHHHHHHHHHHHHhchh
Confidence 999999999886 8999999999999999999999999999999999999987322 4579999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCch-----h---hhhhHHHHHHHHHHhhhhhCC----------CcccccHHHHHHHHHHHhcc
Q 002921 743 ISPIVMTVVLCLVPILKHSE-----E---LNKSLIENSAITLGRLAWVCP----------ELVSPHMEHFMQPWCIALSM 804 (865)
Q Consensus 743 ~~~~~~~il~~l~~~l~~~~-----~---~~~~~~~~~~~~l~~l~~~~~----------~~~~~~~~~~l~~~~~~l~~ 804 (865)
+.+|++.+++.+...+.... + ....++..+..+++.++...+ +.+.||++.+++.+.....+
T Consensus 728 ~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 807 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888876431 0 012577777777766654321 45678888888655544444
Q ss_pred CC-ChHHHHHHHHHHHHHHhhCch-hhHhh-HHHHHHHhhc
Q 002921 805 IR-DDTEKEDAFRGLCAMVKANPS-GALSS-LVFMCRAIAS 842 (865)
Q Consensus 805 ~~-~~~~~~~~~~~l~~l~~~~~~-~~~~~-l~~~~~~~~~ 842 (865)
.. +...|..++.++..++...+. .+.++ ...+++.+..
T Consensus 808 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~ 848 (876)
T 1qgr_A 808 EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHH
Confidence 32 567899999999999998665 55555 2344554444
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.3e-55 Score=527.82 Aligned_cols=764 Identities=13% Similarity=0.170 Sum_probs=584.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC------cCC
Q 002921 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SMS 87 (865)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~------~~~ 87 (865)
.+++.++|.++.+||++ +| ||++|++++++|+|+..|++++.+ .+.+.++|++|++.|||.|.++|. .++
T Consensus 4 ~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 4 LETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred HHHHHHHHHHhcCCCHH-HH--HHHHHHHhhcCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 56899999999999998 78 999999999999999999999974 467899999999999999999998 799
Q ss_pred HhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
++.|+.||+.+++.+.+++..+|++++.+++.|++.++++.||++++.|.+.++++++..+++++.+|..+++.+...+.
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987779999999999999999998899999999999999999989999999999999997654222
Q ss_pred cC-CCCCCCcchhhhHHHHHH-------HhcCCCH---------HHHHHHHHHHHHHhc-cccHHhHHhHHHHHHHHHHh
Q 002921 168 SD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLL 229 (865)
Q Consensus 168 ~~-~~~~~~~~~~~l~~~l~~-------~l~~~~~---------~vr~~a~~~l~~~~~-~~~~~~~~~~~~~l~~l~~~ 229 (865)
+. .+..+...+..+++.+++ .++++.. .++..+++++..+.. ..|..+..+++.+++.+...
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 10 000000112333333333 3454321 334457777776653 35666667777777776665
Q ss_pred hCC------C--C-------HHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHh
Q 002921 230 SND------P--S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSY 289 (865)
Q Consensus 230 ~~~------~--~-------~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~v~~~a~~~l~~l 289 (865)
+.. . + ..+|+.++++|..+.+.+++.+.+|++.+++.++..+. ..++.++..+++||..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 431 0 1 35788999999999999999999999999998887653 45688999999999999
Q ss_pred hccCCchhhHH--hhhhhHH-HHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 002921 290 FEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (865)
Q Consensus 290 ~~~~~~~~~~~--~~~~~l~-~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~ 366 (865)
++.+..++.++ +++..++ +.+++.|+++++|.+.|++||++ +++ ++. |++..|+
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~-----------~d~-----e~~d~~s 376 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR-----------RDL-----EGSDTDT 376 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH-----------HHH-----HC----C
T ss_pred hCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHH-------HHH-----------hcc-----CcccccC
Confidence 88754456665 8999999 78889999999998889877643 111 011 1123468
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhc------cCCCcchhHHHHHHHHHHHHHhch---hhhhhc-----cHH
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEGC---IKGLYP-----HLS 432 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~-----~l~ 432 (865)
+|.+|..+++.++..+|+.+++.+++.+.+.++ +++ |+.|++|++++|.++++. .+.... .+.
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 999999999999999998889999999988887 456 999999999999998753 222221 344
Q ss_pred HH-HHHHHhccCCC---ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 433 EI-VAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 433 ~i-~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
.+ ...+++.+.|+ +|.||.+|||++|++++++. .+++..+++.++..+.|+++.||.+||.|+..|++
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--------KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 43 44577777887 99999999999999998752 46899999999999999999999999999999997
Q ss_pred H-----------hccchhhhHHHHHHHHHHHhcccc-----hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHH
Q 002921 509 E-----------AAEELAPRLEIILQHLMMAFGKYQ-----RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (865)
Q Consensus 509 ~-----------~~~~~~~~~~~i~~~l~~~l~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l 572 (865)
. .++.+.||++.+++.|+.+++... ......++++++.++...++.+. ||++.+++.+...+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~l 603 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEIV 603 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 4 245689999999999999998751 12345789999999999999887 89999999999988
Q ss_pred hcCC--CCCcch-hhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHH
Q 002921 573 QQLP--NSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (865)
Q Consensus 573 ~~~~--~~~~~~-~~~~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~ 648 (865)
.... .+++.. ..+++|++.++...++ .+.++.+.++|.+..+|... ..++...+++.++.++
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~--------------~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--------------IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--------------CTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh--------------hHhhHHHHHHHHHHHH
Confidence 7642 223333 4689999999998554 56677888888887777631 2356777888999888
Q ss_pred HHhhhhhhhhcccchHHHHHH--HHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHH
Q 002921 649 EGLGSGIESLVAQSNLRDMLL--QCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVAN 726 (865)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~--~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 726 (865)
... ..+.+++.+ ++|.+. .+++... .......++..++...++.+.+ +..++..+.+.+.+. . .+.
T Consensus 670 ~~~-~~~~~~~~~--~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----~--~~~ 737 (960)
T 1wa5_C 670 EQS-ATIPESIKP--LAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK----A--YEV 737 (960)
T ss_dssp HHC-SSCCTTTGG--GHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT----T--THH
T ss_pred Hhc-cCCCHHHHH--HHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC----c--ccc
Confidence 876 667778876 888887 6665442 3345566677776665555443 344555555555554 2 247
Q ss_pred HHHHHHHHHHHhcccc-ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh-hCCCcccc---------cHHHHH
Q 002921 727 NACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW-VCPELVSP---------HMEHFM 795 (865)
Q Consensus 727 ~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~---------~~~~~l 795 (865)
.++.++|.++..++.+ +.||++.+++.+.+.+..++ .+.++...+..++.++. .+|+.+.+ +...+.
T Consensus 738 ~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~ 815 (960)
T 1wa5_C 738 HGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSK--TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWG 815 (960)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHH
T ss_pred hHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCC--cHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHH
Confidence 8999999999999988 99999999999999998763 34455555555555443 23332222 233455
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhC---chhhHhhHHHHHHHhhccCC
Q 002921 796 QPWCIALSMIRDDTEKEDAFRGLCAMVKAN---PSGALSSLVFMCRAIASWHV 845 (865)
Q Consensus 796 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~l~~~~~~~~~~~~ 845 (865)
+.|+..+....+..+|+.++.++++++..+ |+.+.+.++.+++++++.-.
T Consensus 816 ~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 816 NFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 599999999888999999999999999998 77777889999988876433
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.5e-45 Score=444.34 Aligned_cols=756 Identities=15% Similarity=0.166 Sum_probs=546.7
Q ss_pred ChhhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCH
Q 002921 10 QEQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (865)
Q Consensus 10 ~~~~~~~~~~~l~~~-~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~ 88 (865)
++..++++.+++..+ .++|++ .|++|+++|++++++|++|..+..++.. +.++++|++|++.||+.|+++|..+++
T Consensus 19 ~~~~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 19 LDFTVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp CCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred CHhhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 345678899999884 468888 9999999999999999999999999974 788999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhC---CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhcc-----CChhHHhHHHHHHHHHHh
Q 002921 89 SNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICE 160 (865)
Q Consensus 89 ~~~~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~L~~l~~ 160 (865)
+.+..+|+.+++.+.+ .++.+|++++.+++.|++.++++.||++++.+.+.+++ +++..++.++.+|..+++
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 9999999999998864 36889999999999999999989999999999999976 366788999999999987
Q ss_pred hchhh-c----ccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhc------------------------
Q 002921 161 DIPQV-L----DSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIM------------------------ 209 (865)
Q Consensus 161 ~~~~~-~----~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~------------------------ 209 (865)
+.... . +......+...++.+++.+.+.+++. +..++..+++|+..++.
T Consensus 176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~ 255 (963)
T 2x19_B 176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSEL 255 (963)
T ss_dssp HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTT
T ss_pred HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchH
Confidence 54221 1 01111223345666777777766553 22366666666655443
Q ss_pred -------------cc-cHHhHHhHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHHHhhchhhhh------hhHHH
Q 002921 210 -------------LM-PSALFVSMDQYLQGLFL-------LSNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRN 262 (865)
Q Consensus 210 -------------~~-~~~~~~~~~~~l~~l~~-------~~~~~~~~~r~~~~~~l~~l~~~~~~~~~------~~l~~ 262 (865)
.. +....+.+..+++.++. ...+.+.+.....++.+..+.+.++..+. +++..
T Consensus 256 ~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 335 (963)
T 2x19_B 256 FDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLA 335 (963)
T ss_dssp HHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHH
Confidence 10 01111122223332222 12233455666778888888776665543 56667
Q ss_pred HHHHHhhhcCC-----CCHHHHHHHHHHHHHhhcc---------CCchhhHHhhhhhHHHHHHhhccCChhhh-hhhhhc
Q 002921 263 LFEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDDE-SLVEAE 327 (865)
Q Consensus 263 l~~~l~~~~~~-----~~~~v~~~a~~~l~~l~~~---------~~~~~~~~~~~~~l~~~ll~~l~~~~~d~-~~~~~~ 327 (865)
+++.++....+ .++++...++++|..+++. +.....+++++.++++.++..+.+.+++. +.|++
T Consensus 336 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~- 414 (963)
T 2x19_B 336 LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS- 414 (963)
T ss_dssp HHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH-
T ss_pred HHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh-
Confidence 77777776654 4667888999999998873 12345667899999999998887654431 11110
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc-cHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhh----ccCC
Q 002921 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASG 402 (865)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l----~~~~ 402 (865)
| +.+.| ..|+.+.+++..++...|+.+++.+++.+.+.+ ++.+
T Consensus 415 -----------------------------d---e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 462 (963)
T 2x19_B 415 -----------------------------D---EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS 462 (963)
T ss_dssp -----------------------------H---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC
T ss_pred -----------------------------h---HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 1 11123 468999999999999999888888899888888 4556
Q ss_pred CcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH
Q 002921 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (865)
Q Consensus 403 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (865)
|+.|+++++++|.+++++.+...++++.+++. +..+.++++.||.+++|++|++++++.. ..+++..+++
T Consensus 463 ---w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~-l~~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~ 532 (963)
T 2x19_B 463 ---WQHTEALLYGFQSIAETIDVNYSDVVPGLIGL-IPRISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLP 532 (963)
T ss_dssp ---HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH-GGGSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHH
T ss_pred ---hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHH
Confidence 99999999999999999887667888888884 4566667999999999999999999863 3578899999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHhc-ccCCchh
Q 002921 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG-FELNQPV 559 (865)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~-~~~~~~~ 559 (865)
.++..+++ +.|+..||.++.++++.++..+.||++.+++.+...+++. +...+..++++++.++.+.+ ..+. +
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~--~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL--K 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH--H
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH--H
Confidence 99999976 7899999999999999999999999999999999999863 44667788999999998776 4544 8
Q ss_pred hHhhhhHHHHHHHhcCCCC--Ccc----hhhHHHHHHHHHHHhccc----------------------cccchHHHHHHH
Q 002921 560 YLDILMPPLIAKWQQLPNS--DKD----LFPLLECFTSIAQALGAG----------------------FTQFAQPVFQRC 611 (865)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~--~~~----~~~~~~~l~~l~~~~~~~----------------------~~~~~~~i~~~l 611 (865)
|++.+++.+.+.|...... +++ +...++|++.+++.++.. +.++.+.+++.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999888752111 111 246789999999988742 233556666666
Q ss_pred HHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcC-CChhHHHHHHHHHHHH
Q 002921 612 INIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDL 690 (865)
Q Consensus 612 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l 690 (865)
.+++.... .+.++.+.++.+++.++..+|+.+.++++. +++.+....+. +. ...+.+++.+
T Consensus 689 ~~~l~~~~------------~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~--~~~~l~~~~~~~~~----~~~l~l~~~l 750 (963)
T 2x19_B 689 QKVLSKWL------------NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ--LCEMLGRMYSTIPQ----ASALDLTRQL 750 (963)
T ss_dssp HHHHHHHT------------TCHHHHHHHHHHHHHHHHHSSSTTGGGHHH--HHHHHHHHHHHSCC----HHHHHHHHHH
T ss_pred HHHHHhcc------------CchHHHHHHHHHHHHHHHhhcccccccHHH--HHHHHHHHHHcCCc----cHHHHHHHHH
Confidence 66665431 144677888899999999999999999887 77777665543 22 2455667777
Q ss_pred Hhh--chhhhHhhHHHH----HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccccc--ch-HHHHHHHHHHHhcCc
Q 002921 691 ARV--CPVHLQARLSDF----LDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS--PI-VMTVVLCLVPILKHS 761 (865)
Q Consensus 691 ~~~--~~~~~~~~~~~~----l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~-~~~il~~l~~~l~~~ 761 (865)
+.. .+..+.+++..+ +..+...++.. ..+.++++......++.++.+.+..+. +. +..+++.+...+...
T Consensus 751 i~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 829 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFLLVTSVTLTLFQQG-PRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP 829 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHC-TTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhhC-cccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC
Confidence 773 323333444443 33333333211 011578999999999999998886653 55 888899888888765
Q ss_pred hhhhhhHHHHHHHHHHhhhhhCC--Cc----ccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHH
Q 002921 762 EELNKSLIENSAITLGRLAWVCP--EL----VSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVF 835 (865)
Q Consensus 762 ~~~~~~~~~~~~~~l~~l~~~~~--~~----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 835 (865)
...+...++.++..++...+ .. +.++...++..++..+........-......+..++..+|..+.+++..
T Consensus 830 ---~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~ 906 (963)
T 2x19_B 830 ---EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKE 906 (963)
T ss_dssp ---CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 36677888888888886432 21 2356677777777776543333333344455566777777655555544
Q ss_pred HH
Q 002921 836 MC 837 (865)
Q Consensus 836 ~~ 837 (865)
.+
T Consensus 907 ~l 908 (963)
T 2x19_B 907 AL 908 (963)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-46 Score=450.77 Aligned_cols=755 Identities=12% Similarity=0.155 Sum_probs=520.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
.++++.+++..+++||++ .|++|+++|++++++|++|.++.+++.. +.++++|++|++.||+.|+++|..++++.+.
T Consensus 5 d~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ------CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred hHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 356788888888899999 9999999999999999999999999974 6789999999999999999999999999999
Q ss_pred HHHHHHhhhhhC---CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC------ChhHHhHHHHHHHHHHhhch
Q 002921 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~------~~~~r~~al~~L~~l~~~~~ 163 (865)
.+|+.+++.+.+ .++.||++++.+++.|++.+++ .||++++.+.+.++++ ++..++.++.+|..++++..
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999998854 3689999999999999999988 9999999999999875 56788999999999997643
Q ss_pred hhcccCCC----CCCCcchhhhHHHHHHHhcCC-C-------HHHHHHHHHHHHHHhc--cccHH----h----H-----
Q 002921 164 QVLDSDVP----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA----L----F----- 216 (865)
Q Consensus 164 ~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~-~-------~~vr~~a~~~l~~~~~--~~~~~----~----~----- 216 (865)
..-....+ ..+...++.+++.+.+.+++. + ..++..+++|+..++. +.|.. + .
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~ 240 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHK 240 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhh
Confidence 21100000 001123456666666666432 1 2788899999988776 23311 0 0
Q ss_pred -----------------------------------------HhHHHHHHHHHH-------hhCCCC---HHHHHHHHHHH
Q 002921 217 -----------------------------------------VSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAF 245 (865)
Q Consensus 217 -----------------------------------------~~~~~~l~~l~~-------~~~~~~---~~~r~~~~~~l 245 (865)
+.+..+++.++. ...+.+ ++.....++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011122222222 123334 26666778888
Q ss_pred HHHHhhchhhhh-----------hhHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHhhcc----------CCchhhH
Q 002921 246 NLLIEVRPSFLE-----------PHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFEA----------QLPHENL 299 (865)
Q Consensus 246 ~~l~~~~~~~~~-----------~~l~~l~~~l~~~~~-----~~~~~v~~~a~~~l~~l~~~----------~~~~~~~ 299 (865)
..+.+.+...+. +++..+++.++.... ..+++++..+++||..+++. +.....+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 888766555443 466677777776553 34778999999999998762 1123566
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
++++..+++.++..+.+.+++. |+ +. +.++.+...+.|+++.+++..++
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~~--~~---------------------------~~--d~~e~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEKS--LA---------------------------KW--SSDDLECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTT--TS---------------------------CS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccc--cc---------------------------cc--CHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776643221 10 00 11111122368999999999999
Q ss_pred hhhCcchhhhhHHHHHHhhcc-----CCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC--CCChHHHHH
Q 002921 380 NVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSI 452 (865)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~ 452 (865)
...|+.+++.+++.+.+.+++ .+ |+.|++++++++.+++++.+...++++.+++ ++..+. |+++.||.+
T Consensus 450 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 450 DVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHH
Confidence 999988899999998888765 56 9999999999999999998777788899988 555555 679999999
Q ss_pred HHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Q 002921 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (865)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 532 (865)
++|++|++++++.. ..+++..+++.++..+ | +.|+..||.++.++++.++..+.||++.+++.+...+++.
T Consensus 526 a~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 526 ALETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhc------CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 99999999999863 3478999999999999 4 7899999999999999999999999999999999999873
Q ss_pred --chhhHHHHHHHHHHHHHHhc-ccCCchhhHhhhhHHHHHHHhcCCCCC---c----chhhHHHHHHHHHHHhcc----
Q 002921 533 --QRRNLRIVYDAIGTLADAVG-FELNQPVYLDILMPPLIAKWQQLPNSD---K----DLFPLLECFTSIAQALGA---- 598 (865)
Q Consensus 533 --~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~---~----~~~~~~~~l~~l~~~~~~---- 598 (865)
+...+..++++++.++...+ .+. .+|+..+++.+.+.+.+..... . .....+++++.+...++.
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 674 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPEEI--PKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE 674 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTTHH--HHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCChHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc
Confidence 45677789999999998765 333 2788888888888776432111 1 124556666777676654
Q ss_pred ---------ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHH
Q 002921 599 ---------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (865)
Q Consensus 599 ---------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 669 (865)
.+.++.+.+++.+.+++.... .+.++.+.++.+++.++..+|+.+.||++. +++.+.
T Consensus 675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~~~l~ 740 (971)
T 2x1g_F 675 QATDQPIVQPVLLVMQRTMPIFKRIAEMWV------------EEIDVLEAACSAMKHAITNLRSSFQPMLQD--LCLFIV 740 (971)
T ss_dssp ---------CCHHHHHTTHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HHHHHH
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhcc------------ccHHHHHHHHHHHHHHHHhhhhhccccHHH--HHHHHH
Confidence 244566777777766665311 145788889999999999999999999987 999998
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhhchhh------hHhhHHHHHHHHHHhcCCC---CCCCchhHHHHHHHHHHHHHHhcc
Q 002921 670 QCCMDDASDVRQSAFALLGDLARVCPVH------LQARLSDFLDIAAKQLNTP---KLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 670 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~~~l~~l~~~l~~~---~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
..++.... ..++++++.++..++.. +.+.+..++..+...+... ..++.+++++.....++.++.+.+
T Consensus 741 ~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 741 ASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 88865322 45889999999987752 3344455555555544432 111256888999999999999888
Q ss_pred cccc--ch-HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCC--CcccccH----HHHHHHHHHHhccCCChHHH
Q 002921 741 QEIS--PI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP--ELVSPHM----EHFMQPWCIALSMIRDDTEK 811 (865)
Q Consensus 741 ~~~~--~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~----~~~l~~~~~~l~~~~~~~~~ 811 (865)
..+. |. +..+++.....+..++ ......++.++..++...+ +.+.+++ +.++..++..+........-
T Consensus 818 ~~~~~s~~~l~~i~~~~~~~l~~~~---~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~ 894 (971)
T 2x1g_F 818 QVLEDKTLAYDRLVFYAQRGMTLPE---SGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQV 894 (971)
T ss_dssp GGGGCTTSCHHHHHHHHHHHHTSSC---SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGG
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHH
Confidence 7664 66 8888888887776542 4455667777776665432 2223333 33333443333222222222
Q ss_pred HHHHHHHHHHHhhCchhhHhhHHHHH
Q 002921 812 EDAFRGLCAMVKANPSGALSSLVFMC 837 (865)
Q Consensus 812 ~~~~~~l~~l~~~~~~~~~~~l~~~~ 837 (865)
..+...|..+....|..+.+++...+
T Consensus 895 ~~~a~~l~~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 895 DKFADILLAMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHh
Confidence 33445677777777776666666544
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=2.3e-44 Score=435.86 Aligned_cols=790 Identities=14% Similarity=0.193 Sum_probs=566.7
Q ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhH
Q 002921 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (865)
Q Consensus 11 ~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~ 90 (865)
|..++++.+++..+++|+++ .|++|+++|++++++|++|..+.+++.. +.++++|++|++.||+.|+++|..++++.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cccHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 45678999999999999998 9999999999999999999999999975 67999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCC---------ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhh
Q 002921 91 QQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (865)
Q Consensus 91 ~~~i~~~ll~~l~~~---------~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~ 161 (865)
+..||+.+++.+.+. ++.+|++++.+++.|++.++++.||++++.+.+.++ .++..++.++.+|..+++.
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 999999999988642 478999999999999999999999999999999996 5667788899999999877
Q ss_pred chhhcccCCC--------CCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHh-HH--------------
Q 002921 162 IPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSAL-FV-------------- 217 (865)
Q Consensus 162 ~~~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~-~~-------------- 217 (865)
+...-..+.. ..+...++.+++.+.+++++ ++..++..+++|+..++.+.+... ..
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 6531000000 00112345566666666654 467888889999988877665211 00
Q ss_pred ----------------------------hH----HHHHHHHHH--------------hhCCCCHHHHHHHHHHHHHHHhh
Q 002921 218 ----------------------------SM----DQYLQGLFL--------------LSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 218 ----------------------------~~----~~~l~~l~~--------------~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
.+ +.++..+.. ...+.+.+.....++.+..+.+.
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 00 001111100 00112233334455555444433
Q ss_pred chhh------hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhc----cCCchhhHHhhhhhHHHHHHhhccCChhhh
Q 002921 252 RPSF------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (865)
Q Consensus 252 ~~~~------~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~ 321 (865)
+.+. +.+++..+++.++......+++++..+++||..+++ .+......++++.++++.++..|.+.+ |.
T Consensus 328 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d~ 406 (1049)
T 3m1i_C 328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-EV 406 (1049)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-TC
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-ce
Confidence 2222 345667788888887777789999999999999988 445677888999999999999998854 32
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc-
Q 002921 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA- 400 (865)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~- 400 (865)
++.++++. ++++ ++. +| .++|+.|+++..+|..++...|..+++.+.+.+.+.+++
T Consensus 407 ~~~~dd~~-------e~~r-----------~~~--~d---~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 407 LVVENDEG-------EIVR-----------EFV--KE---SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp CEEECTTS-------CEEE-----------CSS--CC---HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS
T ss_pred eeeeCCCC-------cchH-----------hhh--cc---chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC
Confidence 32222111 1221 111 11 134678999999999999888888889999999888864
Q ss_pred -CCCcchhHHHHHHHHHHHHHhchhhhhh-ccHHHHHHHHHhccC-----CCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002921 401 -SGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (865)
Q Consensus 401 -~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (865)
.+ |+.|+++++++|.+++++.+... ++++.+++.+..... |+++.+|..++|++|++++++.. .
T Consensus 464 ~~~---W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------~ 534 (1049)
T 3m1i_C 464 EWS---WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------H 534 (1049)
T ss_dssp SCC---HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------C
T ss_pred CCC---HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh------H
Confidence 45 99999999999999987765433 457888887766332 46788888899999999999874 4
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchh--------hhHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~--------~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 545 (865)
.+++..+++.++..+.|++++|+..||.++.++++.++..+. ||++.+++.+..++.+.+.+....++++++
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999877765 999999999999998877677778899999
Q ss_pred HHHHHhcccCCchhhHhhhhHHHHHHHhcCC-------C--CCc----chhhHHHHHHHHHHHhccccccchHHHHHHHH
Q 002921 546 TLADAVGFELNQPVYLDILMPPLIAKWQQLP-------N--SDK----DLFPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (865)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~--~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~ 612 (865)
.++...+..-...+|+..+++.+.+.|...- + .+. .+..+++|++.++.++|..|.|+++.++..++
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9998887311123799999998887775321 0 011 12467889999999999999999988887766
Q ss_pred HHHHHHHHH------hhcc---------------------------cccC-----CCCCc--------chh--------H
Q 002921 613 NIIQTQQLA------KVDS---------------------------VAAG-----AQYDK--------EFV--------V 638 (865)
Q Consensus 613 ~~l~~~~~~------~~~~---------------------------~~~~-----~~~~~--------~~~--------~ 638 (865)
..++..... ..+. +... ..+-. ++. .
T Consensus 695 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 774 (1049)
T 3m1i_C 695 QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDA 774 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCT
T ss_pred HHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccH
Confidence 544331100 0000 0000 00000 000 1
Q ss_pred hhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHh-----c--CCChhHHHHHHHHHHHHHhhchhhhHh----hHHHHHH
Q 002921 639 CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCC-----M--DDASDVRQSAFALLGDLARVCPVHLQA----RLSDFLD 707 (865)
Q Consensus 639 ~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l-----~--~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~ 707 (865)
.++.+++.++..+|+.+.++++. +++.+..+. + +..+++|+..+.+++++++++...+.+ .+..++.
T Consensus 775 ~~l~l~~~ii~~~~~~~~~~l~~--i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~ 852 (1049)
T 3m1i_C 775 EVLNCMTTVVEKVGHMIPQGVIL--ILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVD 852 (1049)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHH--HHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHH
Confidence 27788889999999888888876 777777663 2 367999999999999999999877653 2567888
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc----c-----ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHh
Q 002921 708 IAAKQLNTPKLKETVSVANNACWAIGELAVKARQ----E-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (865)
Q Consensus 708 ~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (865)
.+...+... +..+.+.++..+..++..... + +..|...++..++..+.+.. +++..+..+..+.+
T Consensus 853 ~~~~al~~~----~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~--h~s~~~~~~~~l~~ 926 (1049)
T 3m1i_C 853 AICWAFKHN----NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD--HKSGFSKQALLLMK 926 (1049)
T ss_dssp HHHHHHTCC----SHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTT--CGGGHHHHHHHHHH
T ss_pred HHHHHhCCC----CchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcch--HhhhHHHHHHHHHH
Confidence 888888877 678899999999988876431 1 23456677888888887764 56556666666666
Q ss_pred hhhh-----------CCCc------ccccHHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHh
Q 002921 779 LAWV-----------CPEL------VSPHMEHFMQPWC-IALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAI 840 (865)
Q Consensus 779 l~~~-----------~~~~------~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~ 840 (865)
|... ++.. -..++...+..++ +..++. +..++..-+.++.+. ..+......++..|+..+
T Consensus 927 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~f~~~l~~~-~~~~~~f~~~~rdf~~~~ 1004 (1049)
T 3m1i_C 927 LISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL-TSEQIASFLSALTKQ-YKDLVVFKGTLRDFLVQI 1004 (1049)
T ss_dssp HHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHc-cCCHHHHHHHHHHHhHhh
Confidence 5531 1111 1113333344433 444443 344555555665544 224456789999999999
Q ss_pred hccCCCc
Q 002921 841 ASWHVRI 847 (865)
Q Consensus 841 ~~~~~~~ 847 (865)
.+|..++
T Consensus 1005 ~~~~~~~ 1011 (1049)
T 3m1i_C 1005 KEVGGDP 1011 (1049)
T ss_dssp TSSSCCG
T ss_pred hhhcCCc
Confidence 9997654
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.7e-41 Score=397.02 Aligned_cols=787 Identities=14% Similarity=0.201 Sum_probs=548.9
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
.++++.+++..+++|+++ .|++|+++|++++++|++|..+..++.. +.++++|++|++.|++.|+++|..++++.+.
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 467888888889999988 9999999999999999999999999964 6789999999999999999999999999999
Q ss_pred HHHHHHhhhhhC----C-----ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 93 YIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 93 ~i~~~ll~~l~~----~-----~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
.+|+.+++.+.. + ++.+|++++.+++.|++.+++..||++++.+.+.+++ ++..+..++.+|..+.++..
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999997742 2 4678999999999999999999999999999999965 45668888899988888753
Q ss_pred hhcccCCC--------CCCCcchhhhHHHHHHHhcC----------------------------------------CCHH
Q 002921 164 QVLDSDVP--------GLAECPINIFLPRLLQFFQS----------------------------------------PHTS 195 (865)
Q Consensus 164 ~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~----------------------------------------~~~~ 195 (865)
..-..+.. +.+...++.+++.+.+.+++ .++.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~ 249 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPD 249 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCHH
Confidence 31000000 00001122222222222221 1345
Q ss_pred HHHHHHHHHHHHhcc-c-cH--HhHHh----HHHHHHHH-H-------------HhhCCCCHHHHHHHHHHHHHHHhhch
Q 002921 196 LRKLSLGSVNQFIML-M-PS--ALFVS----MDQYLQGL-F-------------LLSNDPSAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 196 vr~~a~~~l~~~~~~-~-~~--~~~~~----~~~~l~~l-~-------------~~~~~~~~~~r~~~~~~l~~l~~~~~ 253 (865)
.|..|++||..++.. . ++ .+.+. ++.+++.+ . ....+.+.+..+..+..+..+.+.+.
T Consensus 250 ~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~ 329 (1023)
T 4hat_C 250 TRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1023)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 566666666666642 1 11 12112 22222222 0 00112245556667777777777665
Q ss_pred hhhh--hh----HHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc----CCchhhHHhhhhhHHHHHHhhccCChhhhhh
Q 002921 254 SFLE--PH----LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (865)
Q Consensus 254 ~~~~--~~----l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~ 323 (865)
..+. +. +...+..++......+.++...+++||..+++. +.....++|++.++++.++..|.+.+++.-
T Consensus 330 ~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~i- 408 (1023)
T 4hat_C 330 ALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV- 408 (1023)
T ss_dssp GGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCE-
T ss_pred HHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCccccc-
Confidence 5443 22 223344666666777889999999999999874 124567889999999999999999764321
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc-cHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc--
Q 002921 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-- 400 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-- 400 (865)
++++.++ .+| +.. +|.|+...| ..| ++|..++...|+++++.+++.+.+.+.+
T Consensus 409 ve~d~~~-------~~~-----------e~~--~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~ 464 (1023)
T 4hat_C 409 VENDEGE-------IVR-----------EFV--KESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1023)
T ss_dssp EECTTSC-------EEE-----------CSS--CCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSSTT
T ss_pred CCCCCcc-------HHH-----------Hhc--cchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcCCC
Confidence 1111000 000 000 011111223 333 7888888877888888888888877764
Q ss_pred CCCcchhHHHHHHHHHHHHHhchhhh-hhccHHHHHHHHHhccC-----CCChHHHHHHHHHHHhhHHHHhhhhCCCcch
Q 002921 401 SGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (865)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (865)
.+ |+.|+++++++|++++++.+. ..++++++++.++..+. |+.+.||..++|++|++++|+.. ..
T Consensus 465 ~~---W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~ 535 (1023)
T 4hat_C 465 WS---WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1023)
T ss_dssp CC---HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CH
T ss_pred CC---HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc------cH
Confidence 35 999999999999999988754 56899999999888775 46778899999999999999963 57
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch--------hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--------~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (865)
.+++.+++.+++.+.+++++|+..||+++.++++.|+..+ .||++.+++.+...+...+...+..++++++.
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999899999999999999999987665 57999999999999987777778899999999
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhcCCC-------------CCcchhhHHHHHHHHHHHhccccccchHHHHHHHHH
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN-------------SDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 613 (865)
++...+..-..+.+++.+++.+.+.|+.... ..+.+..+++|++.++.++|..|.|++..+++.+++
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~ 695 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 9999886543346899999998888866321 112346789999999999999999999999999887
Q ss_pred HHHHHHHHh-----hccccc--------------------------CC-------------------CC---Ccchh-Hh
Q 002921 614 IIQTQQLAK-----VDSVAA--------------------------GA-------------------QY---DKEFV-VC 639 (865)
Q Consensus 614 ~l~~~~~~~-----~~~~~~--------------------------~~-------------------~~---~~~~~-~~ 639 (865)
..+...... .++... .. +| .++.+ .+
T Consensus 696 ~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~ 775 (1023)
T 4hat_C 696 LYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence 654432110 000000 00 00 00111 14
Q ss_pred hhhhhhHHHHHhhhhhhhhcccchHHHHHHHH----hcC---CChhHHHHHHHHHHHHHhhchhhhHh----hHHHHHHH
Q 002921 640 CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC----CMD---DASDVRQSAFALLGDLARVCPVHLQA----RLSDFLDI 708 (865)
Q Consensus 640 al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~----l~~---~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~~ 708 (865)
.+.+.+.++..+|..+.+.++. ++..++.+ +++ +.++.|..-+.++..+..++...+.. .+..++..
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~--il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~ 853 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVIL--ILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHH--HHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHH
Confidence 6777778888888777776665 55555443 333 67999999999999999999876642 56778888
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc----c-----ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhh
Q 002921 709 AAKQLNTPKLKETVSVANNACWAIGELAVKARQ----E-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRL 779 (865)
Q Consensus 709 l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l 779 (865)
+.-.++.. ..++.+.+...+..++.+... . +..|...++..+..++.++. ++..-..-+..+.+|
T Consensus 854 ~~~a~~h~----~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~--h~~~f~~~~~~l~~l 927 (1023)
T 4hat_C 854 ICWAFKHN----NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD--HKSGFSKQALLLMKL 927 (1023)
T ss_dssp HHHHHTCC----CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS--CGGGHHHHHHHHHHH
T ss_pred HHHHcCCC----chHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch--hhhhHHHHHHHHHHH
Confidence 88888887 778888888888888765432 1 24577888888899998885 444444444444444
Q ss_pred hh---hC--------CCcc------cccHHHHHHH-HHHHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhh
Q 002921 780 AW---VC--------PELV------SPHMEHFMQP-WCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841 (865)
Q Consensus 780 ~~---~~--------~~~~------~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~ 841 (865)
.. .+ +... ..|+..++.. +.+.+|+. ..+.-...+.++++... ++..+..++..|+-.+.
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~-~~~qi~~fv~~l~~~~~-~~~~f~~~lrdfli~~k 1005 (1023)
T 4hat_C 928 ISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL-TSEQIASFLSALTKQCK-DLVVFKGTLRDFLVQIK 1005 (1023)
T ss_dssp HHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccC-CHHHHHHHHHHHhHHhH
Confidence 32 11 1111 1133333222 33355554 23333444455555433 66778888888888888
Q ss_pred ccCCCc
Q 002921 842 SWHVRI 847 (865)
Q Consensus 842 ~~~~~~ 847 (865)
+++.++
T Consensus 1006 e~~~~~ 1011 (1023)
T 4hat_C 1006 EVGGDP 1011 (1023)
T ss_dssp SSSCCG
T ss_pred hhcCCC
Confidence 887765
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.9e-40 Score=395.29 Aligned_cols=693 Identities=14% Similarity=0.162 Sum_probs=550.1
Q ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hc-----CCC----cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Q 002921 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQ-----FPD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (865)
Q Consensus 11 ~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~-~~-----~p~----~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~ 80 (865)
|+....+..++....+.+.. +|..|-..|++. .+ .++ .-..+++.+. +.++.+|..++..+....+
T Consensus 44 p~~~~~l~~il~~~~~~~~~-vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~ 119 (852)
T 4fdd_A 44 PDFNNYLIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG---DSSPLIRATVGILITTIAS 119 (852)
T ss_dssp HHHHHHHHHHHHTCTTSCHH-HHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCChH-HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 44445566666654556666 999999999875 32 111 1234455553 5678999999999988887
Q ss_pred hhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc--------CChHHHHHHHHHhhccCChhHHhHHH
Q 002921 81 TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDSNDINHMEGAM 152 (865)
Q Consensus 81 ~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--------~~w~~ll~~l~~~l~~~~~~~r~~al 152 (865)
..|..-- ..+.+.+.+.+.+++..+|..+..+++.++...+. ..++.+++.+.+.++++++.+|..|+
T Consensus 120 ~~~~~~w----p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~ 195 (852)
T 4fdd_A 120 KGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAV 195 (852)
T ss_dssp HTTTTTC----TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHH
T ss_pred hcCcccc----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6433221 23556777888888999999999999999976432 23788999999999999999999999
Q ss_pred HHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCC
Q 002921 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND 232 (865)
Q Consensus 153 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (865)
.++..++...+..+. ..++.+++.+++.++++++.+|..|+.+|..+++..++.+.++++.+++.+...+.+
T Consensus 196 ~aL~~~~~~~~~~~~--------~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~ 267 (852)
T 4fdd_A 196 ACVNQFIISRTQALM--------LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD 267 (852)
T ss_dssp HHHHTTTTTTCHHHH--------TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccHHHH--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC
Confidence 999877765433221 245788999999999999999999999999999988888888899999999999899
Q ss_pred CCHHHHHHHHHHHHHHHhh--chhhhhhhHHHHHHHHhhhc-----------CC-----------CCHHHHHHHHHHHHH
Q 002921 233 PSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVN-----------KD-----------TDDDVALEACEFWHS 288 (865)
Q Consensus 233 ~~~~~r~~~~~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~-----------~~-----------~~~~v~~~a~~~l~~ 288 (865)
.++.+|..+++++..+++. ..+.+.+++..+++.++..+ .+ .+..+|..+..++..
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 8999999999999998863 33456788888988887765 22 112367888888887
Q ss_pred hhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002921 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (865)
Q Consensus 289 l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r 368 (865)
++.. ..+ ..++.+++.+...+.. .+|..|
T Consensus 348 la~~--~~~---~~~~~l~~~l~~~l~~----------------------------------------------~~~~~R 376 (852)
T 4fdd_A 348 LANV--YRD---ELLPHILPLLKELLFH----------------------------------------------HEWVVK 376 (852)
T ss_dssp HHHH--HGG---GGHHHHHHHHHHHHTC----------------------------------------------SSHHHH
T ss_pred HHHh--ccH---HHHHHHHHHHHHHhcC----------------------------------------------CCHHHH
Confidence 7765 111 2334455554433321 247899
Q ss_pred HHHHHHHHHHHhhhCc---chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh-hhhccHHHHHHHHHhccCC
Q 002921 369 KCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDD 444 (865)
Q Consensus 369 ~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d 444 (865)
.+|..+++.+++..++ ..++.+++.+...+++++ +.+|.+++++++.+++..++ ...+++..+++.++..+.|
T Consensus 377 ~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 377 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK---ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 9999999999987764 456778888999999888 99999999999999987764 3568899999999999999
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch--hhhHHHHH
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIIL 522 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~~~i~ 522 (865)
+++.||.+|+++++.+++.... ...+|++.+++.++..+++.+......+..+++.+++..+..+ .+|++.++
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~-----~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~ 528 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACT-----ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 528 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGG-----GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhH-----hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 9999999999999999998764 3577999999999999987766666778889999988876655 46999999
Q ss_pred HHHHHHhccc--chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcC--------------CCCCcch-hhH
Q 002921 523 QHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------------PNSDKDL-FPL 585 (865)
Q Consensus 523 ~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------------~~~~~~~-~~~ 585 (865)
+.+++.++.. ..+..+.++++++.++..+|..+. +|++.+++.+++.+... ...+.++ ..+
T Consensus 529 p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~--~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 529 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL--PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 9988654432 223345789999999999999887 89999988777766531 1123333 567
Q ss_pred HHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccch
Q 002921 586 LECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (865)
Q Consensus 586 ~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (865)
+++++.++..+|..+.+|+ +.+++.+++.+.. +..+++..++.+++.++..++..+.+|++.
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~--------------~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~-- 670 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--------------KMPEVRQSSFALLGDLTKACFQHVKPCIAD-- 670 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC--------------SSHHHHHHHHHHHHHHHHHCGGGTGGGHHH--
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC--------------CChhHHHHHHHHHHHHHHHhhHHHHHHHHH--
Confidence 8999999999999999987 6788877766542 245788999999999999999999999987
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 743 (865)
++|.+...+.+.+..+|..|++++|+++...+..+.||+..+++.+.+.+++++. ...++++++.++|+++...+..+
T Consensus 671 ~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~--~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 671 FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC--CHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHHhCHHHh
Confidence 9999999998888999999999999999999999999999999999999987654 45899999999999999988888
Q ss_pred cchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHH
Q 002921 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI 800 (865)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 800 (865)
.||+.++++.++..+....+ ...++.+...++.++..+|+.+.+.+..++..+.+
T Consensus 749 ~~~l~~~~~~~~~~l~~~~d--~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~ 803 (852)
T 4fdd_A 749 APMLQQFIRPWCTSLRNIRD--NEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVAS 803 (852)
T ss_dssp GGGHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhccccc--cHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHh
Confidence 89999999999999976432 44688999999999999999888777766666543
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.6e-40 Score=411.83 Aligned_cols=743 Identities=13% Similarity=0.149 Sum_probs=547.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----------CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~ 84 (865)
.++.++|+...+||++ +|++|+..|.+..+.+ ..+..+++.+. +.++.+|..|+..|.+....
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~~--- 78 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVSK--- 78 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHhcCCCCHh-HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHh---
Confidence 3688899999999999 9999999998764432 23445666664 57899999999998776643
Q ss_pred cCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC---------ChHHHHHHHHHhhc-cCChhHHhHHHHH
Q 002921 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (865)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---------~w~~ll~~l~~~l~-~~~~~~r~~al~~ 154 (865)
+++.....+++.++..+.++++.+|..++.+++.++...++. .|++++|.|.+.+. ++++.+|++|+.+
T Consensus 79 -~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 79 -VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 566788899999999999999999999999999999887554 69999999999998 5789999999999
Q ss_pred HHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHhhCCC
Q 002921 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP 233 (865)
Q Consensus 155 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 233 (865)
+..+++.++..+. .+.+.+++.++..+.++++.+|..|+.+++.++...++.+.+. ++.+++.+.. +.
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---ND 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TC
T ss_pred HHHHHHHhHhHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc---CC
Confidence 9999987765442 4578999999999999999999999999999998876554322 3444444332 22
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhh
Q 002921 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (865)
Q Consensus 234 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~ 313 (865)
+..+|..+++++..++...++.+.+|++.+++.++..+.+.++++|..++.++..+++. ..+.+.||++.+++.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--ChHHHHHhHHHHHHHHHHH
Confidence 24577889999999999989899999999999999999988899999999999988876 5566789999999999988
Q ss_pred ccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCC----CCCccccccccHHHHHHHHHHHHHhhhCc---ch
Q 002921 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE----DDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (865)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (865)
+.+.+.. ..+++.++.....+. .+.++++ +..++++..|++|.+|..+++.++...|+ .+
T Consensus 305 l~~d~~~--~~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDEDENAMDAD-----------GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred hCCCCCC--CCccccccccccccc-----------ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8764321 011000000000000 0000000 00112345799999999999999997775 45
Q ss_pred hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhch-------------------hhhhhccHHHHHHHHHhccCCCCh
Q 002921 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-------------------IKGLYPHLSEIVAFLIPLLDDKFP 447 (865)
Q Consensus 387 ~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~-------------------~~~~~~~l~~i~~~l~~~l~d~~~ 447 (865)
++.++|.+...+.+.+ ..+|.+++.+++.+.... .+.+..+++.+++.+.+.++|+++
T Consensus 372 ~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKERE---ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSS---SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 6677888888888777 899999999998887643 234566778888888888999999
Q ss_pred HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHH
Q 002921 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAA-EELAPRLEIILQH 524 (865)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~--~~vr~~a~~al~~l~~~~~-~~~~~~~~~i~~~ 524 (865)
.+|.+++.+++.++..++. ...+++..+++.++..+.|++ ..++..++.++..+++..+ +.+.||++.+++.
T Consensus 449 ~vr~~~~~~L~~l~~~~~~-----~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPG-----ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTT-----TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHchh-----hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 9999999999999987653 245789999999999999975 4899999999999988664 4589999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHhcc-------cCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHh
Q 002921 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGF-------ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQAL 596 (865)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~ 596 (865)
++..+++....++..++.+++.+++.+|. .+. +|++.++|.+++.+... +.+..+ ..++.+++.++...
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH--HHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Confidence 99999887766777788999999988886 554 89999999999998643 234444 67889999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHh-hhhhhhhcccchHHHHHHHHhcCC
Q 002921 597 GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL-GSGIESLVAQSNLRDMLLQCCMDD 675 (865)
Q Consensus 597 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~l~~~l~~~l~~~ 675 (865)
|..+.++++.+++.+.+.+.. ...+..+..+++.++... +.++.++++. ++|.+...+.+.
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~----------------e~~r~~~~~al~~i~~~~~~~~~~~~~~~--i~~~L~~~l~~~ 662 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKN----------------EITRLTTVKALTLIAGSPLKIDLRPVLGE--GVPILASFLRKN 662 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTS----------------SSHHHHHHHHHHHHTTCSSCCCCHHHHHH--HHHHHHHHTTSC
T ss_pred CchhhhhHHHHHHHHHHHhcc----------------chhHHHHHHHHHHHHhCccccchHHHHHH--HHHHHHHHHHhC
Confidence 999999988888876655431 134555666666666432 2245677766 999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhchhhh-HhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHH
Q 002921 676 ASDVRQSAFALLGDLARVCPVHL-QARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCL 754 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l 754 (865)
+..+|..++.+++.++..++..+ .+.+..++..+...+++. +..+...+..+++.++...+..+.++...+++.+
T Consensus 663 ~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~----D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~ 738 (1230)
T 1u6g_C 663 QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES----DMHVSQMAISFLTTLAKVYPSSLSKISGSILNEL 738 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT----CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcc----hHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHH
Confidence 99999999999999999987544 234444444444444454 6778889999999999887777777888888888
Q ss_pred HHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhccCC----ChHHHHHHHHHHHHHHhhCch
Q 002921 755 VPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIR----DDTEKEDAFRGLCAMVKANPS 827 (865)
Q Consensus 755 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~l~~l~~~~~~ 827 (865)
+..+..+. ......+.....+..+...++. ...+..+++.++..+.... +...+..+.+++..++...+.
T Consensus 739 ~~~l~~~~-~~~~~~~~l~~~~~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~ 812 (1230)
T 1u6g_C 739 IGLVRSPL-LQGGALSAMLDFFQALVVTGTN--NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK 812 (1230)
T ss_dssp HHHHTCTT-CCHHHHHHHHHHHHHHHTTCCT--TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCcc-cchHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch
Confidence 88887653 1122333333344444443322 2345555555543322111 122355667777777765443
No 11
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.2e-39 Score=383.40 Aligned_cols=730 Identities=13% Similarity=0.159 Sum_probs=499.7
Q ss_pred hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHh-
Q 002921 13 GFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~- 89 (865)
.++++.++++.+++| |++ .|++|+++|++++++|++|..+..++......++++|++|+..|++.|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~ 78 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNES 78 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTT
T ss_pred CHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhh
Confidence 468899999888888 566 9999999999999999999999999975212389999999999999999 68899
Q ss_pred ---HHHHHHHHHhhhhhC-----CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCCh-hHHhHHHHHHHHHHh
Q 002921 90 ---NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (865)
Q Consensus 90 ---~~~~i~~~ll~~l~~-----~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~-~~r~~al~~L~~l~~ 160 (865)
.+..+|+.++..+.. .+..+|++++.+++.++..+++..||++++.+.+.++++++ ......+++|..+.+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 999999999998753 46789999999999999999999999999999999987554 344556667776666
Q ss_pred hchhhcccCC----------CCCC-CcchhhhHHHHHHHhcC----CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHH
Q 002921 161 DIPQVLDSDV----------PGLA-ECPINIFLPRLLQFFQS----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (865)
Q Consensus 161 ~~~~~~~~~~----------~~~~-~~~~~~l~~~l~~~l~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 225 (865)
++....-... .+.+ ++.++.+++.++..+.. .++.++..+++|+++++.++|...... ..+++.
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~ 237 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNL 237 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHH
Confidence 6533110000 0000 01134445555555543 688999999999999999987554433 456666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhch----------------------------h-----------------------
Q 002921 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRP----------------------------S----------------------- 254 (865)
Q Consensus 226 l~~~~~~~~~~~r~~~~~~l~~l~~~~~----------------------------~----------------------- 254 (865)
++..+.+ +++|..|++||..++.... +
T Consensus 238 l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~ 315 (980)
T 3ibv_A 238 LYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDP 315 (980)
T ss_dssp HHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 6666554 4555556655544432110 0
Q ss_pred ---------hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc----C---CchhhHHhhhhhHHHHHHhhccCCh
Q 002921 255 ---------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----Q---LPHENLKEFLPRLVPVLLSNMIYAD 318 (865)
Q Consensus 255 ---------~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~----~---~~~~~~~~~~~~l~~~ll~~l~~~~ 318 (865)
...+++..+++.++....++++++...+++||..+.+. + ......++++.++++.++..|.+.+
T Consensus 316 ~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~ 395 (980)
T 3ibv_A 316 SELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE 395 (980)
T ss_dssp C--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 11145557778888888888999999999999998754 1 1245678999999999999999976
Q ss_pred hhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhh----hhHHHH
Q 002921 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPVI 394 (865)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~~l 394 (865)
++. |++ +.|+||++ ..-..|+....+++.++...++.+++ .+.+.+
T Consensus 396 d~~--~~~--------------------------~~d~ed~~--~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 396 SQE--WDD--------------------------DPDSEEEA--EFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp TCC--CCC--------------------------CSSSSTHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccc--ccc--------------------------ccchhHHH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 531 211 01112222 22247888776665555555666677 666666
Q ss_pred HHhhc---cCCCcchhHHHHHHHHHHHHHhchhhhh------hccHHHHHHHHHhccC-----CCChHHHHHHHHHHHhh
Q 002921 395 QAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGL------YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRF 460 (865)
Q Consensus 395 ~~~l~---~~~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l 460 (865)
.+.+. +.+ |+.+|+++++++.+++++.... .++++.+++.+...++ +++|.||.++++++|++
T Consensus 446 ~~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 446 STAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHhcccCCCC---HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 66663 345 9999999999999999887421 2456666776666544 89999999999999999
Q ss_pred HHHHhhhhCCCcchhhHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-----
Q 002921 461 SKFIVQDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ----- 533 (865)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~----- 533 (865)
++|+.. ..+++..+++.++. ++.+++++||.+|++++.+|++.++..+.||++.++..+..++....
T Consensus 523 s~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 523 ASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp GGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC
T ss_pred HHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCc
Confidence 999963 46789999999999 89999999999999999999999999999999999999988876310
Q ss_pred ----------------hhhHHHHHHHHHHHHHHhcc-cCCchhhHhhhhHHHHHHHhcCCC----CCcc---hhhHHHHH
Q 002921 534 ----------------RRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPLIAKWQQLPN----SDKD---LFPLLECF 589 (865)
Q Consensus 534 ----------------~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~----~~~~---~~~~~~~l 589 (865)
.+.+..+++++|.++...+. .-....|++.+++++++.++..-. .+.. +...+.++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al 676 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAI 676 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred ccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHH
Confidence 11356789999999988663 111237889999888887764211 1011 11223333
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHH
Q 002921 590 TSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (865)
Q Consensus 590 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 669 (865)
+.+++.+.. .-.+ ..+ ....+.+ ..+.+.
T Consensus 677 ~~lakgf~~----~~~~-------------------------~~p--------------------~~~~f~~--~~~~il 705 (980)
T 3ibv_A 677 GNFAKGFPA----RGSE-------------------------EVA--------------------WLASFNK--ASDEIF 705 (980)
T ss_dssp HHHHHTSCS----CC-C-------------------------CCS--------------------HHHHHHH--HHHHHH
T ss_pred HHHhccCCc----ccCC-------------------------CCc--------------------HHHHHHH--HHHHHH
Confidence 444433221 1000 000 0011111 334443
Q ss_pred HHhc--CCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchH
Q 002921 670 QCCM--DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIV 747 (865)
Q Consensus 670 ~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 747 (865)
..++ ..+..||+++..++..++...|..+.|+++.++..+....+.. + -...++.+|.++...+.++.+.+
T Consensus 706 ~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~------e-~~~fL~l~~qli~~f~~~~~~~l 778 (980)
T 3ibv_A 706 LILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMN------E-LVDVLSFISQLIHIYKDNMMEIT 778 (980)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT------T-HHHHHHHHHHHHHHTTTTSHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHH------H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3678999999999999999999999999999999999765543 2 24577999999999998876766
Q ss_pred HHHHHH----HHHHhcCchh------hhhhHHHHHHHHHHhhhhhC-CCcc-----cccHHHHHHHHHHHhccCCChHHH
Q 002921 748 MTVVLC----LVPILKHSEE------LNKSLIENSAITLGRLAWVC-PELV-----SPHMEHFMQPWCIALSMIRDDTEK 811 (865)
Q Consensus 748 ~~il~~----l~~~l~~~~~------~~~~~~~~~~~~l~~l~~~~-~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~ 811 (865)
..++.. +..++..+.. .++.+++....++..++..+ +..+ .++++.++..++....+..|....
T Consensus 779 ~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~ 858 (980)
T 3ibv_A 779 NRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQ 858 (980)
T ss_dssp HHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHH
Confidence 555544 4455554321 12335555555666666533 2221 246778888888776666788999
Q ss_pred HHHHHHHHHHHhhCc-hhhHhhHHH----HHHHhhccCCCc
Q 002921 812 EDAFRGLCAMVKANP-SGALSSLVF----MCRAIASWHVRI 847 (865)
Q Consensus 812 ~~~~~~l~~l~~~~~-~~~~~~l~~----~~~~~~~~~~~~ 847 (865)
|.++..+.++++.-. +...+++.. +++...+..-.|
T Consensus 859 K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~ 899 (980)
T 3ibv_A 859 KSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNP 899 (980)
T ss_dssp HHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999832 222334433 444444444333
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.7e-37 Score=372.94 Aligned_cols=689 Identities=12% Similarity=0.163 Sum_probs=543.1
Q ss_pred CCHHHHHHHHHHHHHHhc-----------------CC-----CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc
Q 002921 28 SSTADKSQIWQQLQQYSQ-----------------FP-----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (865)
Q Consensus 28 ~~~~~r~~a~~~L~~~~~-----------------~p-----~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~ 85 (865)
+.+ +|..|-..|++.-+ -| ..-..++..+. +.++.+|..++..+.......|..
T Consensus 54 ~~~-vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~ 129 (861)
T 2bpt_A 54 KLE-GRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPH 129 (861)
T ss_dssp CHH-HHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred ChH-HHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcc
Confidence 445 89999988887521 11 11234555554 456889999999998877765542
Q ss_pred CCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHhcCc------CChHHHHHHHHHhhccC--ChhHHhHHHHHHH
Q 002921 86 MSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGI------AGWLELLQALVTCLDSN--DINHMEGAMDALS 156 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~------~~w~~ll~~l~~~l~~~--~~~~r~~al~~L~ 156 (865)
..-..+...+++.+.++ ++.+|..+..+++.++....+ ...+.+++.+.+.+.++ ++.+|..++.++.
T Consensus 130 ---~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~ 206 (861)
T 2bpt_A 130 ---GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALA 206 (861)
T ss_dssp ---TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 11234566777888877 899999999999999986432 35678899999999887 7899999999999
Q ss_pred HHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHH-HHHHHHHHhhCCCCH
Q 002921 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSA 235 (865)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~ 235 (865)
.++..+...+... ...+.+++.+.+.++++++.+|..+++++..++...++.+.+++. .+++.+...+.+.+.
T Consensus 207 ~~~~~~~~~~~~~------~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 280 (861)
T 2bpt_A 207 DSLIFIKNNMERE------GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND 280 (861)
T ss_dssp HHGGGCHHHHTSH------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHccCh------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9887665443211 113567888888899999999999999999999887777777887 888888888888899
Q ss_pred HHHHHHHHHHHHHHhhc-----------------hhhhhhhHHHHHHHHhhhcCCC-------CHHHHHHHHHHHHHhhc
Q 002921 236 EVRKLVCAAFNLLIEVR-----------------PSFLEPHLRNLFEYMLQVNKDT-------DDDVALEACEFWHSYFE 291 (865)
Q Consensus 236 ~~r~~~~~~l~~l~~~~-----------------~~~~~~~l~~l~~~l~~~~~~~-------~~~v~~~a~~~l~~l~~ 291 (865)
.+|..+++++..+++.. +..+.+++..+++.++..+.+. +..+|..+..++..++.
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~ 360 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ 360 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Confidence 99999999999888753 2245567788888888776532 24688888888888776
Q ss_pred cCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
. .. ...++.+++.+...+.. .+|..|.+|
T Consensus 361 ~--~~---~~~~~~l~~~l~~~l~~----------------------------------------------~~~~~r~~a 389 (861)
T 2bpt_A 361 N--CG---NHILEPVLEFVEQNITA----------------------------------------------DNWRNREAA 389 (861)
T ss_dssp H--HG---GGGHHHHHHHHHHHTTC----------------------------------------------SSHHHHHHH
T ss_pred H--cc---HhHHHHHHHHHHHHcCC----------------------------------------------CChhHHHHH
Confidence 4 11 12344455554433321 247899999
Q ss_pred HHHHHHHHhhhC-c---chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhh--hccHHHHHHHHHhccCCC
Q 002921 372 AAALDVLSNVFG-D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPHLSEIVAFLIPLLDDK 445 (865)
Q Consensus 372 ~~~l~~l~~~~~-~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~d~ 445 (865)
..+++.++...+ + ..++.+++.+...+++++ +.+|.+++++++.++...+..+ .++++.+++.++..++|+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 466 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS---LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH 466 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC
Confidence 999999987765 3 335667888888888888 9999999999999999877654 578999999999999887
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 002921 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (865)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~ 523 (865)
+.+|.+|+++++.+++.+.+. .+....+|++.+++.+++.+.+ .++.||..++.+++.++...+....+|++.+++
T Consensus 467 -~~v~~~a~~al~~l~~~~~~~-~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 467 -PKVATNCSWTIINLVEQLAEA-TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSS-SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 999999999999999887410 0123568999999999999984 447899999999999999998888999999988
Q ss_pred HHHHHhccc---------------chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHH
Q 002921 524 HLMMAFGKY---------------QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (865)
Q Consensus 524 ~l~~~l~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (865)
.++..+.+. ....+..++++++.++..+|..+. +|++.+++.+.+.+..... +.....++.+
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~-~~v~~~~~~~ 621 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE--PVADMLMGLFFRLLEKKDS-AFIEDDVFYA 621 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHHHHSTTG-GGTHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHccCCC-CcHHHHHHHH
Confidence 888887643 123455789999999999999876 8999999999999876431 1222578889
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHH
Q 002921 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDML 668 (865)
Q Consensus 589 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l 668 (865)
++.++...|..|.+|++.+++.+++.+.. .+.+++..++.+++.++..+|..+.+|++. +++.+
T Consensus 622 l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--l~~~l 685 (861)
T 2bpt_A 622 ISALAASLGKGFEKYLETFSPYLLKALNQ--------------VDSPVSITAVGFIADISNSLEEDFRRYSDA--MMNVL 685 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHHC--------------TTSHHHHHHHHHHHHHHHHTGGGGHHHHHH--HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------------ccHHHHHHHHHHHHHHHHHhchhccchHHH--HHHHH
Confidence 99999999999999999999999888842 145678889999999999999999999987 99999
Q ss_pred HHHhcCCC--hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCC-C------chhHHHHHHHHHHHHHHhc
Q 002921 669 LQCCMDDA--SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK-E------TVSVANNACWAIGELAVKA 739 (865)
Q Consensus 669 ~~~l~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~------~~~~~~~a~~~l~~l~~~~ 739 (865)
...+++.+ .++|..++.++|.++..+|+.+.||++.++|.+.+.+...... + ...+|.+++.+++.++...
T Consensus 686 ~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l 765 (861)
T 2bpt_A 686 AQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988754 8899999999999999999999999999999999988753100 0 1468899999999999887
Q ss_pred c---ccccchHHHHHHHHHHHhcCchhh-hhhHHHHHHHHHHhhhhhC-CCcccccHH-HHHHHHHHHhcc
Q 002921 740 R---QEISPIVMTVVLCLVPILKHSEEL-NKSLIENSAITLGRLAWVC-PELVSPHME-HFMQPWCIALSM 804 (865)
Q Consensus 740 ~---~~~~~~~~~il~~l~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~-~~~~~~~~~-~~l~~~~~~l~~ 804 (865)
+ ..+.+|+..+++.+...+.+.... ...++..++.+++.++... +..+.+|++ .+++.+++.+..
T Consensus 766 ~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhh
Confidence 7 568899999999998888653101 3679999999999999877 677888998 899999998874
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=6.2e-38 Score=377.51 Aligned_cols=696 Identities=14% Similarity=0.132 Sum_probs=532.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhC--CChhHHHHHHHHHHHHHHhc-------CcCChHHH
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLG-------GIAGWLEL 132 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~-------~~~~w~~l 132 (865)
+.+.++|+.|...|++.-. +....+...|++.+.+ .+..+|..++.++.+..... ++..|+.+
T Consensus 12 s~d~~~r~~A~~~L~~~~~--------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l 83 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV--------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHh--------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccC
Confidence 5688999999999976332 2345677888888876 46889999999999876432 23456544
Q ss_pred H--------HHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHH
Q 002921 133 L--------QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLG 202 (865)
Q Consensus 133 l--------~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~ 202 (865)
- +.+.+.+.++++.. ..+..+++.++...... ..+++++|.+.+.++++ ++.+|..++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~----------~~w~~ll~~l~~~l~~~~~~~~~r~~al~ 152 (876)
T 1qgr_A 84 DANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV----------NQWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG----------TCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc----------cccHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3 44888888887777 89999999998763221 23588999999999998 9999999999
Q ss_pred HHHHHhccc-cHHhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhchhhhhhhH--HHHHHHHhhhcCCCCHH
Q 002921 203 SVNQFIMLM-PSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDD 277 (865)
Q Consensus 203 ~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~ 277 (865)
++..+++.. ++.+..+++.+++.+...+.++ +..+|..+++++..++...+..+.... ..+++.+.....+.+++
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 232 (876)
T 1qgr_A 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (876)
T ss_dssp HHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHH
Confidence 999999765 4445567788888888888776 688999999999988865443332111 23666666677788899
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhh-hHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (865)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (865)
+|..+++++..+++. ..+.+.+++. .+++.++..+...++
T Consensus 233 vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------------- 273 (876)
T 1qgr_A 233 VRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDID------------------------------------- 273 (876)
T ss_dssp HHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTCSSH-------------------------------------
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCch-------------------------------------
Confidence 999999999999876 5566788888 888887664432111
Q ss_pred CCccccccccHHHHHHHHHHHHHhhhC-------------------c-c----hhhhhHHHHHHhhccC----CCcchhH
Q 002921 357 DDDDIVNVWNLRKCSAAALDVLSNVFG-------------------D-E----ILPTLMPVIQAKLSAS----GDEAWKD 408 (865)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~-------------------~-~----~~~~~~~~l~~~l~~~----~~~~~~~ 408 (865)
.+|..+.+++..+++... . . .++.+++.+.+.+... ++.+|..
T Consensus 274 ---------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~ 344 (876)
T 1qgr_A 274 ---------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344 (876)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCH
T ss_pred ---------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHH
Confidence 257777777776665420 0 1 2345566666665421 1234999
Q ss_pred HHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
|.+|..+++.++..+++ ..++.+++.+...+.|+++.+|.+|+++++.+++.+.+. ...+++..+++.++..+
T Consensus 345 r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~----~~~~~~~~~l~~l~~~l 417 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS----QLKPLVIQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHHHHh
Confidence 99999999999998874 447788999999999999999999999999998765311 23467889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc--hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc--------------
Q 002921 489 LDTNKRVQEAACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG-------------- 552 (865)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-------------- 552 (865)
.|+++.||..|+++++.+++..+.. ..+|++.+++.++..+.+. ..++..+..+++.++...+
T Consensus 418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 9999999999999999999987654 4689999999999999874 6677789999999998876
Q ss_pred ccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002921 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ 631 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~ 631 (865)
..+. +|++.++|.+.+.+.....+++.+ ..++++++.++...|..+.+|+..+++.+++.+......... . ..+
T Consensus 497 ~~l~--~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~-~~~ 571 (876)
T 1qgr_A 497 YCLS--SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESH--I-QST 571 (876)
T ss_dssp CSST--TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS--C-CST
T ss_pred hhhh--HhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhc--c-CCh
Confidence 2354 799999999999987654333344 578999999999999988899999999988887753210000 0 001
Q ss_pred CC----cchhHhhhhhhhHHHHHhh-hhhhhhcccchHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhchhhhHhhHHH
Q 002921 632 YD----KEFVVCCLDLLSGLAEGLG-SGIESLVAQSNLRDMLLQCCMDDA--SDVRQSAFALLGDLARVCPVHLQARLSD 704 (865)
Q Consensus 632 ~~----~~~~~~al~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 704 (865)
.| .+++..++.+++.++..+| ..+.+|++. ++|.+...+++.. ..++..++.+++.++...+..+.||++.
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 649 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV--VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA 649 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH--HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH--HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 12 2456678899999999999 889999987 9999999988764 4789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCC
Q 002921 705 FLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (865)
Q Consensus 705 ~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (865)
++|.+...+.+.. +..+|..+++++|.++...+..+.||+..+++.+...+.+++ .+..++..++.++|.++...+
T Consensus 650 ~~~~l~~~l~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 650 FKPFLGIGLKNYA---EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN-VHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHHHCT---THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT-SCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHcCcc---hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc-ccHHhhHHHHHHHHHHHHHhc
Confidence 9999999987642 568999999999999999998999999999999999998742 145688999999999998777
Q ss_pred CcccccHHHHHHHHHHHhccCC---Ch-------HHHHHHHHHHHHHHhhC----------chhhHhhHHHHHHHhhcc
Q 002921 785 ELVSPHMEHFMQPWCIALSMIR---DD-------TEKEDAFRGLCAMVKAN----------PSGALSSLVFMCRAIASW 843 (865)
Q Consensus 785 ~~~~~~~~~~l~~~~~~l~~~~---~~-------~~~~~~~~~l~~l~~~~----------~~~~~~~l~~~~~~~~~~ 843 (865)
+.+.+|++.+++.+.+.+.... +. ..|..++.++..+++.. ...+.++++.+++.+...
T Consensus 726 ~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 804 (876)
T 1qgr_A 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHI 804 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHH
Confidence 7788999999999988876543 11 34556667776666541 145677888888776544
No 14
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4.7e-38 Score=366.14 Aligned_cols=786 Identities=15% Similarity=0.209 Sum_probs=547.9
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
.++.+.+++..+++|+++ .|++|+++|++++++|++|..+..++.. +.++++|++|++.|++.|+++|..++++.+.
T Consensus 26 Dv~~Le~lv~~ly~p~~~-~r~qA~~~L~q~q~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~ 102 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGA-QQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCE 102 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHH-HHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence 567899999999999988 9999999999999999999999999864 6789999999999999999999999999999
Q ss_pred HHHHHHhhhhhC---------CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 93 YIKSELLPCLGA---------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 93 ~i~~~ll~~l~~---------~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
.+|+.+++.+.. .++.++++++.+++.|++.++++.||++++.+.+.+++ ++..+..++.+|..+.+++.
T Consensus 103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999997742 35778999999999999999999999999999998865 45778889999999998843
Q ss_pred hh----ccc----CCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHH-HHhhCCC
Q 002921 164 QV----LDS----DVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL-FLLSNDP 233 (865)
Q Consensus 164 ~~----~~~----~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ 233 (865)
.. +.. +..+.+...++.+++.+...+++ .++.+...++++++.++.+++-...-. ..+++.+ +..+.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~-- 258 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN-- 258 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--
Confidence 21 100 00001112346666666666654 578888889999999999876332211 1234444 34333
Q ss_pred CHHHHHHHHHHHHHHHhh----------------------------------------------------------chhh
Q 002921 234 SAEVRKLVCAAFNLLIEV----------------------------------------------------------RPSF 255 (865)
Q Consensus 234 ~~~~r~~~~~~l~~l~~~----------------------------------------------------------~~~~ 255 (865)
+++.|..|++||..++.. +...
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l 338 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL 338 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555432 1110
Q ss_pred ------hhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc---CC--------------------chhhHHhhhhhH
Q 002921 256 ------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QL--------------------PHENLKEFLPRL 306 (865)
Q Consensus 256 ------~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~---~~--------------------~~~~~~~~~~~l 306 (865)
+.+.+...+..++.+....+.++...++++|..+.+. +. .+...+|++.++
T Consensus 339 Ie~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L 418 (1073)
T 3gjx_A 339 LEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHH
Confidence 0111222233344445566788888999999887654 10 122366778888
Q ss_pred HHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcch
Q 002921 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (865)
Q Consensus 307 ~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (865)
...++..|..+++... .+++. | +.+|.. .. |. ++-+.++...+++..++...++.+
T Consensus 419 ~~vlI~~m~~P~ev~i-~e~e~------g-e~~re~-----------~~-d~----~~~~ly~~mrd~L~~lt~l~~~~~ 474 (1073)
T 3gjx_A 419 RLLMVSRMAKPEEVLV-VENDQ------G-EVVREF-----------MK-DT----DSINLYKNMRETLVYLTHLDYVDT 474 (1073)
T ss_dssp HHHHHHTCCCSCCEEE-EECSS------S-CEEEEE-----------CS-SC----HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCCCccccc-cCccc------c-hHHHHH-----------Hh-hc----chHHHHHHHHHHHHHHhcCCHHHH
Confidence 8888888887653211 01000 0 011100 00 10 111355566677777665556677
Q ss_pred hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhh-hhccHHHHHHHHHhccCCC-----ChHHHHHHHHHHHhh
Q 002921 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDK-----FPLIRSISCWTLSRF 460 (865)
Q Consensus 387 ~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~l~~l 460 (865)
...+++.+.+.++.+ ..+|..++++++++|+++....+. -.++++++++.++.....+ .+.++...+|++|++
T Consensus 475 ~~i~~~~l~~~~~~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHHTSC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 777777777665532 233999999999999999666543 3588999999998877554 346777788999999
Q ss_pred HHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch--------hhhHHHHHHHHHHHhccc
Q 002921 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKY 532 (865)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--------~~~~~~i~~~l~~~l~~~ 532 (865)
.+|+.. ...+++.++..+++.+.++++.|+..||.|+..+++.|+..+ .||++++++.+.......
T Consensus 554 ~~wl~~------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l 627 (1073)
T 3gjx_A 554 PRFLRA------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL 627 (1073)
T ss_dssp HHHHHH------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC
T ss_pred HHHHHh------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc
Confidence 999973 578999999999999999999999999999999999997665 579999999999998888
Q ss_pred chhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCC---------CC----cchhhHHHHHHHHHHHhccc
Q 002921 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN---------SD----KDLFPLLECFTSIAQALGAG 599 (865)
Q Consensus 533 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---------~~----~~~~~~~~~l~~l~~~~~~~ 599 (865)
..+.....+++++.++...+.....+.+++.+|+...+.|+...+ .+ +.+..+++|...++.++|..
T Consensus 628 ~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 628 QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh
Confidence 888888999999999999887653357899999999888876421 12 23367889999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHh-----hccc--------------------------ccCC------------------
Q 002921 600 FTQFAQPVFQRCINIIQTQQLAK-----VDSV--------------------------AAGA------------------ 630 (865)
Q Consensus 600 ~~~~~~~i~~~l~~~l~~~~~~~-----~~~~--------------------------~~~~------------------ 630 (865)
|.+++..+++.+++.-+...+.. .++. ....
T Consensus 708 f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl 787 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVL 787 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHH
Confidence 99999999988776543211100 0000 0000
Q ss_pred -CC---Ccchh-HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHH----hc---CCChhHHHHHHHHHHHHHhhchhhh
Q 002921 631 -QY---DKEFV-VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC----CM---DDASDVRQSAFALLGDLARVCPVHL 698 (865)
Q Consensus 631 -~~---~~~~~-~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~----l~---~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (865)
+| .++.+ ...+.+.+.++..+|..+.+.++. ++..++.| ++ .+.++.|..-+.++..+..++...+
T Consensus 788 ~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~--il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l 865 (1073)
T 3gjx_A 788 IDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ--IFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF 865 (1073)
T ss_dssp HHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH--HHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH--HHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHH
Confidence 00 00011 146778888888888888887776 66666554 33 3679999999999999999988765
Q ss_pred Hh----hHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccc------c-ccchHHHHHHHHHHHhcCchhhhhh
Q 002921 699 QA----RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ------E-ISPIVMTVVLCLVPILKHSEELNKS 767 (865)
Q Consensus 699 ~~----~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~------~-~~~~~~~il~~l~~~l~~~~~~~~~ 767 (865)
.. .+..++..+.-.+++. ..++.+.+...+..++.+... . +..|...++..+..++.++. ++.
T Consensus 866 ~~l~~~~~~~~i~~i~wa~kh~----~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~--h~~ 939 (1073)
T 3gjx_A 866 LAIPPAQFKLVLDSIIWAFKHT----MRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS--HTA 939 (1073)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTT--CGG
T ss_pred HcCCHHHHHHHHHHHHHHcCCC----ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCch--Hhh
Confidence 43 4566888888888887 778889999888888876542 1 34577888888899998885 444
Q ss_pred HHHHHHHHHHhhhh---hC----C---Cc---ccccHHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHhhCchhhHhhH
Q 002921 768 LIENSAITLGRLAW---VC----P---EL---VSPHMEHFMQPWC-IALSMIRDDTEKEDAFRGLCAMVKANPSGALSSL 833 (865)
Q Consensus 768 ~~~~~~~~l~~l~~---~~----~---~~---~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 833 (865)
.-..-+..+.+|.. .+ | .. -..|+..++...+ +.+|+.. ...-..-+.++++... ++..+..++
T Consensus 940 ~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~~~-~~qi~~fv~~l~~~~~-d~~~f~~~l 1017 (1073)
T 3gjx_A 940 GLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQ-DAQVKLFVTGLFSLNQ-DIPAFKEHL 1017 (1073)
T ss_dssp GHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 44343444444332 11 1 10 0113333333322 5556532 3333444555555422 677889999
Q ss_pred HHHHHHhhccCCC
Q 002921 834 VFMCRAIASWHVR 846 (865)
Q Consensus 834 ~~~~~~~~~~~~~ 846 (865)
..|+-.+.+|...
T Consensus 1018 rDFli~~ke~~~~ 1030 (1073)
T 3gjx_A 1018 RDFLVQIKEFAGE 1030 (1073)
T ss_dssp HHHHHHHTSCCTT
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999773
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.2e-38 Score=353.83 Aligned_cols=419 Identities=23% Similarity=0.366 Sum_probs=354.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhh-----------
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA----------- 82 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~----------- 82 (865)
++.++|.++.+||++ +|++|+++|+++++ .|+|+..|++++.+ .+.++.+|++|++.||+.+.++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 478899999999999 99999999999986 58999999999985 3568999999999999998654
Q ss_pred hCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc-CChHHHHHHHHHhhccC--ChhHHhHHHHHHHHHH
Q 002921 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (865)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~r~~al~~L~~l~ 159 (865)
|..++++.++.||+.+++.|.++++.+ ++++.+++.|++.+++ ..||++++.|.+.+.++ ++..|++++.+|+.++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999888889 9999999999999865 59999999999999998 8999999999999999
Q ss_pred hhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhccccHHhHH--hHHHHHHHHHHhhCCCCH
Q 002921 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDPSA 235 (865)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~ 235 (865)
+.+.... +..+.+.+++.+.+.++++ ++.||..|+++++.++.+..+.... ..+.+++.+...+.+++.
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHSCGGG-------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhCCchh-------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9763221 1346788999999999998 7999999999999988765432211 112346677777788889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccC-------------------Cc
Q 002921 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (865)
Q Consensus 236 ~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~-------------------~~ 295 (865)
++|..++++|..+++.+++.+.+|++ .+++.++..+.+.+++++..++++|..+++.. ..
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 99999999999999999999999999 99999988888999999999999999997652 23
Q ss_pred hhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 002921 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (865)
Q Consensus 296 ~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (865)
...++++++.++|.++..+...++ | +.+.+|++|.+|..++
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~-------------------------------------d--~~~~~~~~r~~a~~~L 352 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDE-------------------------------------N--DDDDDWNPCKAAGVCL 352 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-------------------------------------S--CCTTCCSHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhccc-------------------------------------c--cccccchHHHHHHHHH
Confidence 345667788888888776653211 0 1114689999999999
Q ss_pred HHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh-hhhhccHHHHHHHHHhccCCCChHHHHHHH
Q 002921 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (865)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (865)
+.++..+|+.+++.+++.+.+.+++++ |+.|++|+.++|.+++++. +.+.++++.++|.+++.++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999899999999999999888 9999999999999999886 557788899999999999999999999999
Q ss_pred HHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc
Q 002921 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (865)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 489 (865)
|+++++++++.+.+ ...++++.+++.++..|+
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHGGGGC---CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHhccccc---ccHHHHHHHHHHHHHHhc
Confidence 99999999986421 135788999998886653
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.5e-36 Score=373.01 Aligned_cols=663 Identities=13% Similarity=0.131 Sum_probs=517.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
+.|+.+|..|..-|.+.+++.....++.....+...+++.|.++++.+|..++.+++.++...++..++.+++.+.+.+.
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~ 96 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML 96 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 68999999999999888877655667677778888999999999999999999999999987766788999999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccHHhHHhHH
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 220 (865)
++++.+|.++..+|+.++..++..-... .....+.+.++|.+++.+.+ +++.+|..|+.++..+++..++.+.++++
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~~--~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSGS--ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-----C--CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCccccc--chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 9988999999999999998776431000 00013568999999999984 88999999999999999766666667788
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhh-hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhH
Q 002921 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (865)
Q Consensus 221 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (865)
.+++.++..+.+++..+|..++.++..++...++.+ ...++.+++.+... .+..+|..++++|..+++. ..+.+
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~---~~~~~r~~a~~~l~~l~~~--~~~~~ 249 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN---DSMSTTRTYIQCIAAISRQ--AGHRI 249 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT---CSSCSCTTHHHHHHHHHHH--SSGGG
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---CchhHHHHHHHHHHHHHHH--hHHHH
Confidence 899999999999899999999999999998766543 22344444443322 2245677889999888876 34567
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
.+|++.+++.++..+...+ ..+|..+..+++.++
T Consensus 250 ~~~l~~l~~~ll~~l~d~~----------------------------------------------~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 250 GEYLEKIIPLVVKFCNVDD----------------------------------------------DELREYCIQAFESFV 283 (1230)
T ss_dssp TTSCTTHHHHHHHHHSSCC----------------------------------------------TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC----------------------------------------------HHHHHHHHHHHHHHH
Confidence 8899999999987665210 127999999999999
Q ss_pred hhhCcc---hhhhhHHHHHHhhcc----------------------------------CCCcchhHHHHHHHHHHHHHhc
Q 002921 380 NVFGDE---ILPTLMPVIQAKLSA----------------------------------SGDEAWKDREAAVLALGAIAEG 422 (865)
Q Consensus 380 ~~~~~~---~~~~~~~~l~~~l~~----------------------------------~~~~~~~~r~~a~~~l~~l~~~ 422 (865)
...|+. .++.++|.+.+.+.. .++..|+.|.+|+.+++.++..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 988875 455666666554431 0112489999999999999986
Q ss_pred hhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhC--------------CCcchhhHHHHHHHHHHHH
Q 002921 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--------------HQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 423 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~l 488 (865)
.++.+.++++.++|.+...+.|+++.||.+++.+++.+........+ ......+++.+++.+.+.+
T Consensus 364 ~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l 443 (1230)
T 1u6g_C 364 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM 443 (1230)
T ss_dssp CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh
Confidence 66667788899999999999999999999999999888775431000 0012446677777788889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHhccc-CCchhhHhhhh
Q 002921 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFE-LNQPVYLDILM 565 (865)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~ 565 (865)
+|+++.+|..++.+++.++..++..+.+|++.+++.+...+.+... .++..++.++..+....|.+ +. +|++.++
T Consensus 444 ~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~--~~l~~ll 521 (1230)
T 1u6g_C 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH--PHVQALV 521 (1230)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGH--HHHTTTH
T ss_pred ccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHH--hHHHHHH
Confidence 9999999999999999999988888889999999999999988754 56667788888887767665 44 7999999
Q ss_pred HHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh
Q 002921 566 PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (865)
Q Consensus 566 ~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (865)
|.++..+.+. ...+ ..++.+++.+++.+|. .+.||++.+++.+++.+... +.+.+++
T Consensus 522 p~L~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~------------d~~~~vr 586 (1230)
T 1u6g_C 522 PPVVACVGDP---FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA------------DIDQEVK 586 (1230)
T ss_dssp HHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS------------SSCHHHH
T ss_pred HHHHHHHccc---chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc------------CCCHHHH
Confidence 9999887542 2223 4678889999999887 78899999999988776421 1256789
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCC
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTP 716 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~ 716 (865)
..++.+++.++...|+.+.++++. +++.+...+.++ ..|..++.+++.++.... ..+.+|++.+++.+...+.++
T Consensus 587 ~~a~~~lg~L~~~~g~~~~~~~~~--~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~ 662 (1230)
T 1u6g_C 587 ERAISCMGQIICNLGDNLGSDLPN--TLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN 662 (1230)
T ss_dssp HHHHHHHHHHHHHTGGGCCTHHHH--HHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCchhhhhHHH--HHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888876 999998888653 478889999998886543 356899999999999999887
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHH
Q 002921 717 KLKETVSVANNACWAIGELAVKARQEIS-PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFM 795 (865)
Q Consensus 717 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 795 (865)
+..+|.+++.+++.++...+..+. +++..++..+.+.+.+.+ ..+...++.+++.++...|..+.++.+.++
T Consensus 663 ----~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D---~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l 735 (1230)
T 1u6g_C 663 ----QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD---MHVSQMAISFLTTLAKVYPSSLSKISGSIL 735 (1230)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC---HHHHHHHHHHHHHHTTSCGGGGGGTTTTTH
T ss_pred ----CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcch---HHHHHHHHHHHHHHHHhCchhHHHhHHhHH
Confidence 789999999999999999876552 345555555555554442 346778899999999888877777888888
Q ss_pred HHHHHHhccC
Q 002921 796 QPWCIALSMI 805 (865)
Q Consensus 796 ~~~~~~l~~~ 805 (865)
+.++..+...
T Consensus 736 ~~~~~~l~~~ 745 (1230)
T 1u6g_C 736 NELIGLVRSP 745 (1230)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHHcCc
Confidence 8888877653
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.4e-32 Score=315.07 Aligned_cols=572 Identities=14% Similarity=0.151 Sum_probs=445.0
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcC-cCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
...++..|.++++.+|..++..++.++...+ ...|++++|.|.... ++++.+|..+..+|+.+.+..+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-------- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--------
Confidence 3577888999999999999999999998653 457899999998877 667889999888887666544321
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch
Q 002921 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 253 (865)
.+.+.+++.+...+.++++.+|..|+.++..++...++... .+.+++.+..+..+++...|..++.++..+....+
T Consensus 83 --~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~--~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 83 --EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL--EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp --GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHH--HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred --HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 24578899998888999999999999999999988765321 12245556666677788999999999998887665
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCC
Q 002921 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (865)
Q Consensus 254 ~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~ 333 (865)
+ ...+.+++.+...+.+.++.+|..+++.+..+++.- .. ..+.+.++|.+...+..
T Consensus 159 ~---~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d----------------- 214 (588)
T 1b3u_A 159 S---AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASD----------------- 214 (588)
T ss_dssp H---HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTC-----------------
T ss_pred H---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcC-----------------
Confidence 4 345678888888889999999999999999998762 11 12345666665543321
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCcchhHHHHH
Q 002921 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAA 412 (865)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a 412 (865)
++|.+|..|..+++.++...++ ...+.++|.+...+++++ |.+|.++
T Consensus 215 -----------------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~---~~vR~~a 262 (588)
T 1b3u_A 215 -----------------------------EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS---WRVRYMV 262 (588)
T ss_dssp -----------------------------SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSS---HHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC---HHHHHHH
Confidence 1245899999999999999876 456778899999888888 9999999
Q ss_pred HHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCC
Q 002921 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN 492 (865)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ 492 (865)
+.+++.++...++. .+.+.+++.+...++|+++.||.+|+++++.++..++.. .....+.+.+++.+...++|++
T Consensus 263 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 263 ADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD---CRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT---THHHHHHHTHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh---hhhhHHHHHHHHHHHHHhcCCC
Confidence 99999999876542 234567888999999999999999999999999876421 0112567888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHH
Q 002921 493 KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (865)
Q Consensus 493 ~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l 572 (865)
+.||..++.+++.++..++... ..+.+++.+...+++.+..++..++.+++.+....|.. .+.+.++|.+.+.+
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~lp~l~~~~ 411 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR----QLSQSLLPAIVELA 411 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHh
Confidence 9999999999999998776432 35667778888888877788889999999998887654 45677888887766
Q ss_pred hcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHh
Q 002921 573 QQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (865)
Q Consensus 573 ~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~ 651 (865)
.. .+..+ ..++++++.++..+|..+ +.+.+++.+++.+.. .+..++..++.+++.++..+
T Consensus 412 ~d---~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--------------~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 412 ED---AKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVD--------------HVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp TC---SSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGC--------------SSHHHHHHHHHHHHHHHHHH
T ss_pred cC---CCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 43 23233 578899999999998864 345677776655431 25678899999999999998
Q ss_pred hhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 002921 652 GSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWA 731 (865)
Q Consensus 652 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~ 731 (865)
|..+ +.+. ++|.+....++.++.+|..++.+++.++..++.. .+.+.++|.+.+.++++ +.++|.+++++
T Consensus 473 ~~~~--~~~~--llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~----~~~Vr~~a~~~ 542 (588)
T 1b3u_A 473 GKEW--AHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP----VANVRFNVAKS 542 (588)
T ss_dssp CHHH--HHHH--THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS----CHHHHHHHHHH
T ss_pred Cchh--HHHH--HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC----CchHHHHHHHH
Confidence 8754 3343 8888888888899999999999999999987754 37788999999999887 78999999999
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhh
Q 002921 732 IGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (865)
Q Consensus 732 l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (865)
++.++...+..+. ...+++.+..++.++ ...+|..+..+++.+.
T Consensus 543 l~~l~~~~~~~~~--~~~~~p~l~~l~~d~---d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 543 LQKIGPILDNSTL--QSEVKPILEKLTQDQ---DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHGGGSCHHHH--HHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhchhhh--HHHHHHHHHHHcCCC---chhHHHHHHHHHHHhh
Confidence 9999988765432 245566666655555 3679999999988764
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=5.4e-32 Score=310.31 Aligned_cols=560 Identities=15% Similarity=0.123 Sum_probs=428.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCH-hHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc-CcCChHHHHHHHHHh
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSP-SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTC 139 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~-~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~ 139 (865)
+.++.+|..|+..|...... +.+ .....+...+...+ ++++.+|..++.+++.++... .+..++.+++.+...
T Consensus 21 s~~~~~R~~A~~~l~~i~~~----~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l 95 (588)
T 1b3u_A 21 NEDVQLRLNSIKKLSTIALA----LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESL 95 (588)
T ss_dssp CSCHHHHHHHHHTHHHHHHH----SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHH----hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 45667777777666554432 222 22233444444444 678899999999998777653 345678899999998
Q ss_pred hccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH
Q 002921 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (865)
Q Consensus 140 l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (865)
+.++++.+|..|..+|..+++..+... ..+.++|.+.+..++++..+|..|+.+++.+....++.. .
T Consensus 96 ~~~~~~~vR~~a~~~L~~l~~~~~~~~----------~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~---~ 162 (588)
T 1b3u_A 96 ATVEETVVRDKAVESLRAISHEHSPSD----------LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---K 162 (588)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTSCHHH----------HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---H
T ss_pred HhCchHHHHHHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH---H
Confidence 888899999999999999998776531 235678888888888899999999999999988776443 4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhH
Q 002921 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (865)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (865)
+.+++.+...+.|+++.+|..++++|..+++..+.. .+.+.+++.+...+++.++.+|..|+.++..+++.-. ..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-QE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-HH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-HH--
Confidence 556777778888999999999999999999876653 3456778888888889999999999999988876511 11
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
.+.+.++|.+...+.. .+|.+|..+..+++.++
T Consensus 238 -~~~~~~~~~l~~~~~d----------------------------------------------~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAED----------------------------------------------KSWRVRYMVADKFTELQ 270 (588)
T ss_dssp -HHHHHTHHHHHHHHTC----------------------------------------------SSHHHHHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHHccC----------------------------------------------CCHHHHHHHHHHHHHHH
Confidence 2233445544332210 24789999999999999
Q ss_pred hhhCcc-hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh--ccHHHHHHHHHhccCCCChHHHHHHHHH
Q 002921 380 NVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY--PHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (865)
Q Consensus 380 ~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (865)
...|.+ ..+.+++.+.+.+++++ |.+|.++..+++.++..++.... .+++.++|.+...++|+++.||.+++++
T Consensus 271 ~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 271 KAVGPEITKTDLVPAFQNLMKDCE---AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HHHCHHHHHHTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHhCcccchhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 988764 45678899999999888 99999999999999988765432 5678889999999999999999999999
Q ss_pred HHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhh
Q 002921 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRN 536 (865)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 536 (865)
++.++..+.. ....+.+++.+...++|+++.||..++.+++.++...+.. .+.+.+++.+...+++.+..+
T Consensus 348 l~~l~~~~~~-------~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~v 418 (588)
T 1b3u_A 348 IMGLSPILGK-------DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRV 418 (588)
T ss_dssp GGGGHHHHCH-------HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHhhH-------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchH
Confidence 9999988753 2345678888999999999999999999999998876432 245677788888888888888
Q ss_pred HHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 002921 537 LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (865)
Q Consensus 537 ~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 615 (865)
+..++++++.++..+|..+. .+.++|.+...+.. .+..+ ..++.+++.++..+|..+ +.+.++|.+.+.+
T Consensus 419 r~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~ 489 (588)
T 1b3u_A 419 RLAIIEYMPLLAGQLGVEFF----DEKLNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMS 489 (588)
T ss_dssp HHHHHHHHHHHHHHHCGGGC----CHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHh
Confidence 88999999999999987643 34577777776643 33444 678899999999988753 3455666554321
Q ss_pred HHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhch
Q 002921 616 QTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP 695 (865)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 695 (865)
. +.+..++..++.+++.++..+|... +.+. ++|.+...++|++++||..++.+++.++...+
T Consensus 490 ~--------------~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 490 G--------------DPNYLHRMTTLFCINVLSEVCGQDI--TTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp T--------------CSCHHHHHHHHHHHHHHHHHHHHHH--HHHH--THHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred h--------------CCCHHHHHHHHHHHHHHHHhcCHHH--HHHH--HHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 1 1256788899999999999888653 5554 99999999999999999999999999999888
Q ss_pred hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 002921 696 VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (865)
Q Consensus 696 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~ 736 (865)
..+.+ +.++|.+.+.+.+. +.++|..|+.+++.+.
T Consensus 552 ~~~~~--~~~~p~l~~l~~d~----d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 552 NSTLQ--SEVKPILEKLTQDQ----DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHH--HHHHHHHHHHTTCS----SHHHHHHHHHHHHHTT
T ss_pred hhhhH--HHHHHHHHHHcCCC----chhHHHHHHHHHHHhh
Confidence 65432 56777777766666 7899999999998753
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=337.52 Aligned_cols=528 Identities=15% Similarity=0.201 Sum_probs=378.8
Q ss_pred hhhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCH
Q 002921 11 EQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (865)
Q Consensus 11 ~~~~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~ 88 (865)
++..+++.+++..+++| +++ .|++|+++|++++++|+++..+..++. +.+.++.+|++|++.||+.|+++|..+++
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~-~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQR-YRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 56778899999999998 555 799999999999999988888888776 34778999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhC-------CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhh
Q 002921 89 SNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (865)
Q Consensus 89 ~~~~~i~~~ll~~l~~-------~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~ 161 (865)
+.+..||+.+++.+.+ .++.+|++++.+++.|++.++++.||++++.+.+.+++ ++..++.++.+|..++++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 9999999999998752 46889999999999999999999999999999999977 567789999999999987
Q ss_pred chhhcc--cC----CCCCCCcchhhhHHHHHHHhcC-------------------CCHHHHHHHHHHHHHHhccccHHhH
Q 002921 162 IPQVLD--SD----VPGLAECPINIFLPRLLQFFQS-------------------PHTSLRKLSLGSVNQFIMLMPSALF 216 (865)
Q Consensus 162 ~~~~~~--~~----~~~~~~~~~~~l~~~l~~~l~~-------------------~~~~vr~~a~~~l~~~~~~~~~~~~ 216 (865)
+...-. .. ....+...++.+++.+.+++++ ++..++..+++++.+++.+.+..+.
T Consensus 164 v~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i 243 (1204)
T 3a6p_A 164 VVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 (1204)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHH
Confidence 432100 00 0000112244666666666643 2345788889999888877663322
Q ss_pred -HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc-------------------------------------------
Q 002921 217 -VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR------------------------------------------- 252 (865)
Q Consensus 217 -~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~------------------------------------------- 252 (865)
..-..+++.++..+.+ +++|..|++||..++...
T Consensus 244 ~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 244 TAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp HTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 1111233434433322 233444444444433211
Q ss_pred ------------hh--------hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCC--chhhHHhhhhhHHHHH
Q 002921 253 ------------PS--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVL 310 (865)
Q Consensus 253 ------------~~--------~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l 310 (865)
.. ...+.+..+++.++....+.+.++...++++|..+.+... ....+.++++.+++.+
T Consensus 322 l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 322 LCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 10 0122344566666667777888899999999998877621 2345778999999998
Q ss_pred ---HhhccCChhhh---hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc
Q 002921 311 ---LSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (865)
Q Consensus 311 ---l~~l~~~~~d~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~ 384 (865)
+..+.+.+++. ..|..+ ++|+++|++...|++|+...++++.++...+.
T Consensus 402 ~~~l~k~~yp~~~~~~~~~~~~~-------------------------D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~ 456 (1204)
T 3a6p_A 402 MTNLVKMGFPSKTDSPSCEYSRF-------------------------DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK 456 (1204)
T ss_dssp HHHHSCCCCSSCCSSTHHHHHHH-------------------------HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcCccccCCcchhhhhc-------------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 66777754332 122211 11112222345678999999999999999988
Q ss_pred chhhhhHHHHHHhhcc----------------------CCCcchhHHHHHHHHHHHHHhchhhhh-hccHH-HHHHHHHh
Q 002921 385 EILPTLMPVIQAKLSA----------------------SGDEAWKDREAAVLALGAIAEGCIKGL-YPHLS-EIVAFLIP 440 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~----------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~-~i~~~l~~ 440 (865)
..++.+.+.+.+.+.+ ..+..|...++...++..+.+++.+.. .++++ .+++.+++
T Consensus 457 ~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 457 TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 8777777777554432 111237888999999999988874332 12222 23344444
Q ss_pred cc---CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHH
Q 002921 441 LL---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAFAT 505 (865)
Q Consensus 441 ~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d------------~~~~vr~~a~~al~~ 505 (865)
.+ +..+|.+|.+++.+++.++.++. ....++..+++.++..+.+ .+.+||..||.++..
T Consensus 537 ~ll~~~~~~p~l~~~~i~~l~~l~~~~~------~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 537 MVLNFDTKDPLILSCVLTNVSALFPFVT------YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HHHHCCCSCHHHHHHHHHHHHHHGGGGG------TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHh------cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 32 34588999999999999998876 2467899999999998876 235899999999999
Q ss_pred HHHHhccchhhhHHHHHHHHHHHhcccc---hhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhc
Q 002921 506 LEEEAAEELAPRLEIILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 506 l~~~~~~~~~~~~~~i~~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 574 (865)
++..+++.+.||++.+.+.+..++.+.. ...+....+++..++..+++.-..+.|++.+++++++.|.+
T Consensus 611 L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999887544 45666788888888655554333346799999999999875
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.93 E-value=4.5e-21 Score=230.33 Aligned_cols=683 Identities=11% Similarity=0.103 Sum_probs=428.6
Q ss_pred CCHHHHHHHHHHHHHH-hc--C--------C-C----cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHH
Q 002921 28 SSTADKSQIWQQLQQY-SQ--F--------P-D----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (865)
Q Consensus 28 ~~~~~r~~a~~~L~~~-~~--~--------p-~----~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~ 91 (865)
+.+ +|..|-..|++. .+ . | + .-..++..+.+ .+..+|..++..+....+..|..- =
T Consensus 50 ~~~-vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~----W 121 (960)
T 1wa5_C 50 PLS-TRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDR----W 121 (960)
T ss_dssp CHH-HHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTT----C
T ss_pred CHH-HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccc----h
Confidence 445 899999999974 32 1 1 1 12345555543 348999999999988776543210 0
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcC---c--CChHH-------HHHHH-------HHhhccCCh---hHH-
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---I--AGWLE-------LLQAL-------VTCLDSNDI---NHM- 148 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~---~--~~w~~-------ll~~l-------~~~l~~~~~---~~r- 148 (865)
..+.+.+++.+.+++...+..+-.++..+++... . +.+++ ..+.+ .+.++++.. ..+
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 201 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1255677777877777788888888888887531 1 11222 12222 222444322 122
Q ss_pred -----hHHHHHHHHHHh-hchhhcccCCCCCCCcchhhhHHHHHHHhcCC------C---------HHHHHHHHHHHHHH
Q 002921 149 -----EGAMDALSKICE-DIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------H---------TSLRKLSLGSVNQF 207 (865)
Q Consensus 149 -----~~al~~L~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~---------~~vr~~a~~~l~~~ 207 (865)
..+++++..+.. ..+..+ ...+...++.+.+.+... + ..+|..+++++..+
T Consensus 202 ~~~~~~~~~k~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l 273 (960)
T 1wa5_C 202 LFDVLLVLIKLYYDFNCQDIPEFF--------EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLY 273 (960)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHH--------HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHH--------HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHH
Confidence 123333333221 112211 123466667667666431 1 35788999999999
Q ss_pred hccccHHhHHhHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHHHhhch--hhhh--hhHHHHH-HHHhhhcC-----
Q 002921 208 IMLMPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIEVRP--SFLE--PHLRNLF-EYMLQVNK----- 272 (865)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~r~~~~~~l~~l~~~~~--~~~~--~~l~~l~-~~l~~~~~----- 272 (865)
.+..++.+.++++.+++.++..+. ..++.++..+++.+..+++... ..+. +++..++ +.++..+.
T Consensus 274 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d 353 (960)
T 1wa5_C 274 TTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREED 353 (960)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHH
Confidence 988787787888888877776553 3357788889999988876432 3444 6777777 44443321
Q ss_pred ----CCC--------------HHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002921 273 ----DTD--------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (865)
Q Consensus 273 ----~~~--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (865)
+.| ...|..|..++..++.. ..+ ..++.+++.+.+.+.....
T Consensus 354 ~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~--~~~---~v~~~~l~~i~~~l~~~~~--------------- 413 (960)
T 1wa5_C 354 VELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK--NEV---LVTNIFLAHMKGFVDQYMS--------------- 413 (960)
T ss_dssp TTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH--cch---hHHHHHHHHHHHHHHHhcc---------------
Confidence 111 13567777788777765 222 2233333333222211000
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh-----Cc-------chhhhhHHHHHHhhccCC
Q 002921 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILPTLMPVIQAKLSASG 402 (865)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~~~~~~l~~~l~~~~ 402 (865)
+...+|..|.+|..+++.++... |. .+.+.+...+...+++++
T Consensus 414 -------------------------~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~ 468 (960)
T 1wa5_C 414 -------------------------DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN 468 (960)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS
T ss_pred -------------------------CcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC
Confidence 00135899999999999998642 11 222223334444456651
Q ss_pred CcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh------hhhCCCcchhh
Q 002921 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV------QDIGHQNGREQ 476 (865)
Q Consensus 403 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~ 476 (865)
+.....|..+++++|.+++... ..++..+++.+++++.|+++.||.+|++++.++++... .........+|
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~ 545 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS 545 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred CCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh
Confidence 1128999999999999998753 35788899999999999999999999999999887421 00011235789
Q ss_pred HHHHHHHHHHHHcCCC---HH--HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhccc----chh-hHHHHHHHHHH
Q 002921 477 FEKVLMGLLKRILDTN---KR--VQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----QRR-NLRIVYDAIGT 546 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~---~~--vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~----~~~-~~~~~~~~l~~ 546 (865)
+..+++.++..++... .. ....+..++..++...++.+.||++.+++.+...+... +.+ ....++++++.
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 9999999999988641 11 44678999999999999999999999999999888653 222 23368999999
Q ss_pred HHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHH--HHHHHHHHHhhc
Q 002921 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCI--NIIQTQQLAKVD 624 (865)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~--~~l~~~~~~~~~ 624 (865)
++...+++.. .++.+.++|.+...+.+.. ..-...+++.++.+.... ..+.+++.++++.+. ..+.
T Consensus 626 l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~-------- 693 (960)
T 1wa5_C 626 ILNYTQRQNL-PLLVDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE-------- 693 (960)
T ss_dssp HHHTSCGGGH-HHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC--------
T ss_pred HHhcCCcchH-HHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhc--------
Confidence 9988554332 2688899999988887532 112256777788777766 778888888888764 2222
Q ss_pred ccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhh-hHhhHH
Q 002921 625 SVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLS 703 (865)
Q Consensus 625 ~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~ 703 (865)
...++..+..++..++...+..+.. +. .++..+..++.+... ...|+.++++++.+++.. +.||++
T Consensus 694 --------~~~~~~~~~~~L~~~~~~~~~~~~~-~~--~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~ 760 (960)
T 1wa5_C 694 --------LKGNIPAVTRLLKSFIKTDSSIFPD-LV--PVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK 760 (960)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHGGGCSC-SH--HHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred --------CCCCchhHHHHHHHHHHhChHHHHH-HH--HHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHH
Confidence 1123444555555555544433322 22 255666666655443 378999999999999988 999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccc-ccc---------hHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 002921 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISP---------IVMTVVLCLVPILKHSEELNKSLIENSA 773 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~---------~~~~il~~l~~~l~~~~~~~~~~~~~~~ 773 (865)
.+++.+...++..+ ..+.+...+..++.++...+.+ +.+ +...+...+++.+.+-. ...-++.++
T Consensus 761 ~i~~~l~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~--~~~erk~~~ 835 (960)
T 1wa5_C 761 QIAVLLLQRLQNSK---TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIG--NLLDRKIAL 835 (960)
T ss_dssp HHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCC--SHHHHHHHH
T ss_pred HHHHHHHHHHhhCC---cHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhcc--CHHHHHHHH
Confidence 99999999988763 3456656666666665444332 111 22223334444443321 234566777
Q ss_pred HHHHhhhhhC---CCcccccHHHHHHHHHHHhcc
Q 002921 774 ITLGRLAWVC---PELVSPHMEHFMQPWCIALSM 804 (865)
Q Consensus 774 ~~l~~l~~~~---~~~~~~~~~~~l~~~~~~l~~ 804 (865)
..+++++..+ |+.+.+..+.++..++..+..
T Consensus 836 ~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 836 IGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 7888888766 555666778888887776644
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.91 E-value=1.9e-19 Score=217.45 Aligned_cols=685 Identities=10% Similarity=0.077 Sum_probs=421.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CC---CcHHHHHHhhhcc--cC-CCHHHHHHHHHHHHHHHHh--hhC
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FP---DFNNYLAFILARA--EG-KSVEIRQAAGLLLKNNLRT--AYK 84 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~--~p---~~~~~l~~il~~~--~~-~~~~~R~~a~~~L~~~i~~--~w~ 84 (865)
+.+++.+....+.... +|++.-..+..+.+ .| +++..+...+.++ +. .++..+..+...|+..... .|.
T Consensus 85 ~~ll~~l~~~~~~~~~-vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 85 QKILESIVRFAGGPKI-VLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 4566666655433455 89888888888643 34 3444444444320 00 0355677777777654422 222
Q ss_pred cCCHhHH-----------HHHHHHHhhhhhC-CCh-------hHHHHHHHHHHHHHHh--cCcCChHHHHHHHHHhhc--
Q 002921 85 SMSPSNQ-----------QYIKSELLPCLGA-ADR-------HIRSTVGTIVSVVVQL--GGIAGWLELLQALVTCLD-- 141 (865)
Q Consensus 85 ~~~~~~~-----------~~i~~~ll~~l~~-~~~-------~vr~~~a~~l~~i~~~--~~~~~w~~ll~~l~~~l~-- 141 (865)
+.+-+ ..+.+.+.+.+.+ .++ .++..+..++...+.. .+.+....+++.+.+ +.
T Consensus 164 --~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 --TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHK 240 (971)
T ss_dssp --CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhh
Confidence 11111 2223333344432 121 6888888888887773 333355678888877 51
Q ss_pred --------------cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHH-------HhcCCC---HHHH
Q 002921 142 --------------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPH---TSLR 197 (865)
Q Consensus 142 --------------~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~l~~~~---~~vr 197 (865)
++++..|..|+.++..++...... .. ...+..++|.++. .+.+.+ ....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH--NY-----PKTAFVLIKMFLDSLSEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG--GC-----HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc--cc-----HHHHHHHHHHHHHhHHHHHHHHhcccccchHHH
Confidence 135688999999999998753210 00 1233445555443 223444 2666
Q ss_pred HHHHHHHHHHhccccHHhH-----------HhHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHhhc---------
Q 002921 198 KLSLGSVNQFIMLMPSALF-----------VSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR--------- 252 (865)
Q Consensus 198 ~~a~~~l~~~~~~~~~~~~-----------~~~~~~l~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~--------- 252 (865)
...++.+..+.+..+..+. +++..+++.++..+.. .+++++..++..+..+++..
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 393 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQK 393 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccch
Confidence 6777888777754333222 4566777777776532 36778888999888876621
Q ss_pred ---hhhhhhhHHHHHHHHhhhcCCC--------C-------HHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhc
Q 002921 253 ---PSFLEPHLRNLFEYMLQVNKDT--------D-------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (865)
Q Consensus 253 ---~~~~~~~l~~l~~~l~~~~~~~--------~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l 314 (865)
...+.+++..+++.++..+.-+ + .+.|..+.+++..++.. ..+ ..++.+++.+-..+
T Consensus 394 ~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~--~~~---~~l~~~~~~l~~~l 468 (971)
T 2x1g_F 394 HKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDV--LND---YILEILAAMLDEAI 468 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTT--CTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHH
Confidence 1344677778888777655311 1 13456666777666654 221 22233333322221
Q ss_pred cCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---chhhhhH
Q 002921 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLM 391 (865)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~ 391 (865)
..... ...+|..|.++..+++.+++...+ ..++.++
T Consensus 469 ~~~~~-----------------------------------------~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~ 507 (971)
T 2x1g_F 469 ADLQR-----------------------------------------HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLM 507 (971)
T ss_dssp HHHHH-----------------------------------------CTTCCHHHHHHHHHHHHTTTC------CHHHHHH
T ss_pred HhccC-----------------------------------------CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 11000 013588999999999999888754 4456666
Q ss_pred HHHHHhhc-cCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002921 392 PVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (865)
Q Consensus 392 ~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (865)
+.+..... +++ ..+|..+++++|.+++...+. .++++.+++.++..+ | +.|+.+|++++..+++.+...
T Consensus 508 ~~l~~l~~~d~~---~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 508 RVLAEIPYEKLN---VKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHSCTTTSC---HHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHhcCccccC---HHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh---
Confidence 64433332 345 899999999999999876543 378999999999998 4 789999999999999887653
Q ss_pred CcchhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHhc----cc--ch---hhHH
Q 002921 471 QNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFG----KY--QR---RNLR 538 (865)
Q Consensus 471 ~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~----~~--~~---~~~~ 538 (865)
..+|++.++..+.+.+..+ +...+..+..+++.++...+ +...+|+..+++.++..++ .. +. ....
T Consensus 578 --l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 578 --LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 5789999999999999873 57899999999999998654 5666777766666665443 22 11 1222
Q ss_pred HHHHHHHHHHHHhcccCC-----------chhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHH
Q 002921 539 IVYDAIGTLADAVGFELN-----------QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPV 607 (865)
Q Consensus 539 ~~~~~l~~l~~~~~~~~~-----------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i 607 (865)
..++.++.++..++..+. -.+|.+.++|.+...+....++......++.+++.++..+|..+.||++.+
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~ 735 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL 735 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 445556666665543210 026889999998888876432223337889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhh--hhhhccc--chHHHHHHHHhcC-------CC
Q 002921 608 FQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG--IESLVAQ--SNLRDMLLQCCMD-------DA 676 (865)
Q Consensus 608 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~--~~~~~~~--~~l~~~l~~~l~~-------~~ 676 (865)
++.++..+... .. .+++.+++.++..+|.+ ..+.+.+ ..+...++..+.. ..
T Consensus 736 ~~~l~~~~~~~----------------~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 798 (971)
T 2x1g_F 736 CLFIVASFQTR----------------CC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNI 798 (971)
T ss_dssp HHHHHHHCC------------------CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHT
T ss_pred HHHHHHHHhcC----------------Cc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccC
Confidence 98877654431 11 34778888888877763 2222222 1133333333322 37
Q ss_pred hhHHHHHHHHHHHHHhhchhhhH--hh-HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc--ccccc----hH
Q 002921 677 SDVRQSAFALLGDLARVCPVHLQ--AR-LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--QEISP----IV 747 (865)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~--~~-~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~----~~ 747 (865)
++++++.+.+++.++++++..+. |. +..+++.....+... +......++..+..++...+ ..+.+ +.
T Consensus 799 pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~----~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g 874 (971)
T 2x1g_F 799 SDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLP----ESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATG 874 (971)
T ss_dssp HHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSS----CSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhH
Confidence 88999999999999999987775 77 899999998888765 44666778888888766542 22333 33
Q ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccH
Q 002921 748 MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (865)
Q Consensus 748 ~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 791 (865)
..++..+...+... .+++..+++..++.++...+|+...+++
T Consensus 875 ~~l~~~l~~~~~~~--~~~s~~~~~a~~l~~l~~~~~~~~~~~l 916 (971)
T 2x1g_F 875 EQTLYTAMMCVGYL--TPRSQVDKFADILLAMNRKYAAEMAVWM 916 (971)
T ss_dssp HHHHHHHHHHHHTT--SCGGGGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CChhHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 44444444433322 2455667777888888887765444444
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.91 E-value=8.9e-19 Score=211.92 Aligned_cols=677 Identities=13% Similarity=0.111 Sum_probs=427.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CC----CcHHHHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhCc-
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FP----DFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYKS- 85 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~--~p----~~~~~l~~il~~~~--~~~~~~R~~a~~~L~~~i~~~w~~- 85 (865)
+.+.+.+....+.++. +|++.-..+..+.+ .| +++..+...+.++. ..++..+..+..+|+.........
T Consensus 103 ~~ll~~l~~~~~~~~~-ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 103 AQLFTQITRFASGSKI-VLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 4456665553323455 88888888887643 24 44455555443100 024556777777776554321100
Q ss_pred CC-----------HhHHHHHHHHHhhhhhCCC--hhHHHHHHHHHHHHHHhc-CcCChHHHHHHHHHhhccCChhHHhHH
Q 002921 86 MS-----------PSNQQYIKSELLPCLGAAD--RHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGA 151 (865)
Q Consensus 86 ~~-----------~~~~~~i~~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~a 151 (865)
.+ ......+.+.+...+.+.. ..++..+..++...+... ....++.+++.+.+.+. ++..|..+
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a 259 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSS 259 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHH
Confidence 00 1223445555556665432 247777777776666532 12245889999998884 56789999
Q ss_pred HHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHH-------HhcCCCHHHHHHHHHHHHHHhccccHHhH------Hh
Q 002921 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHTSLRKLSLGSVNQFIMLMPSALF------VS 218 (865)
Q Consensus 152 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~l~~~~~~vr~~a~~~l~~~~~~~~~~~~------~~ 218 (865)
+.++..++......-. ...+..+++.++. .+.+.+.......++.+..+.+..+..+. +.
T Consensus 260 ~~~l~~i~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 332 (963)
T 2x19_B 260 VEAIVNAISQPDAQRY-------VNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS 332 (963)
T ss_dssp HHHHHHHHTCTTGGGC-------HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHcccccccC-------HHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHH
Confidence 9999999875321100 1223444444333 23445666666777777777665443332 45
Q ss_pred HHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHhhc-----------hhhhhhhHHHHHHHHhhhcCCCCH------
Q 002921 219 MDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR-----------PSFLEPHLRNLFEYMLQVNKDTDD------ 276 (865)
Q Consensus 219 ~~~~l~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~-----------~~~~~~~l~~l~~~l~~~~~~~~~------ 276 (865)
+..+++.++....+ .++.+...++..+..+++.. ...+.+++..+++.++..+..+++
T Consensus 333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~ 412 (963)
T 2x19_B 333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 56677777776654 34566777888887777621 234567777788777765532211
Q ss_pred ---------HHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccccccc
Q 002921 277 ---------DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347 (865)
Q Consensus 277 ---------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 347 (865)
+.|..+.+++..++.. ... ..++.+++.+-+.+..
T Consensus 413 ~~de~~~~~~~r~~~~~~L~~~~~~--~~~---~~l~~~~~~l~~~l~~------------------------------- 456 (963)
T 2x19_B 413 SSDEKEQFRIYRVDISDTLMYVYEM--LGA---ELLSNLYDKLGRLLTS------------------------------- 456 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HTH---HHHHHHHHHHHHHHHT-------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH--ccH---HHHHHHHHHHHHHHHh-------------------------------
Confidence 1234444454444332 111 1222222222111110
Q ss_pred CCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh
Q 002921 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (865)
Q Consensus 348 ~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 424 (865)
.. ...+|..|.++..+++.+++...+ ..++.+++.+.+ +.+++ ...|..+++++|.+++...
T Consensus 457 ------~~-----~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~---~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 457 ------SE-----EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISN---VQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp ------CC-----CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCS---HHHHHHHHHHHHHTHHHHH
T ss_pred ------cC-----CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 00 013588999999999999988754 344555554332 23345 8899999999999988665
Q ss_pred hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC--CCHHHHHHHHHH
Q 002921 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSA 502 (865)
Q Consensus 425 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d--~~~~vr~~a~~a 502 (865)
+. .++++.+++.++..+.+ +.|+.+|++++..+++.+.. ...+|++.++..+...+.. -+...+..+..+
T Consensus 522 ~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ea 593 (963)
T 2x19_B 522 DH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQA 593 (963)
T ss_dssp HC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 32 26778888888888876 89999999999999988764 3568899999999988885 357899999999
Q ss_pred HHHHHHHhc-cchhhhHHHHHHHHHHHhcc----c-chh---hHHHHHHHHHHHHHHhcccCC-----------------
Q 002921 503 FATLEEEAA-EELAPRLEIILQHLMMAFGK----Y-QRR---NLRIVYDAIGTLADAVGFELN----------------- 556 (865)
Q Consensus 503 l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~----~-~~~---~~~~~~~~l~~l~~~~~~~~~----------------- 556 (865)
++.++...+ +...+|+..+++.+...++. . +.. .....+++++.+++.++....
T Consensus 594 i~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (963)
T 2x19_B 594 LGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQG 673 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------C
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCC
Confidence 999997775 77888999888887776643 1 111 223578888888888764221
Q ss_pred -c--hhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002921 557 -Q--PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (865)
Q Consensus 557 -~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 633 (865)
. .++.+.++|.+...+.....+......++.+++.++..+|+.+.||++++++.++...... ..
T Consensus 674 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-------------~~ 740 (963)
T 2x19_B 674 PNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-------------PQ 740 (963)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-------------CC
T ss_pred CCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-------------Cc
Confidence 1 1467788888777776543222223678889999999999999999999988876654431 01
Q ss_pred cchhHhhhhhhhHHHHHhhh--hhhhhccc--chHHHHHHHHhc-C--CChhHHHHHHHHHHHHHhhchhhhH--hh-HH
Q 002921 634 KEFVVCCLDLLSGLAEGLGS--GIESLVAQ--SNLRDMLLQCCM-D--DASDVRQSAFALLGDLARVCPVHLQ--AR-LS 703 (865)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~--~~~~~~~~--~~l~~~l~~~l~-~--~~~~vr~~a~~~l~~l~~~~~~~~~--~~-~~ 703 (865)
.+.+.+++.++..++. ...+++++ ..++..++..++ + ..++++...+.+++.++.+++..+. +. +.
T Consensus 741 ----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~ 816 (963)
T 2x19_B 741 ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVK 816 (963)
T ss_dssp ----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHH
T ss_pred ----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 1356677777774433 23444443 112222222222 2 4689999999999999999987664 55 88
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc--c----cccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 002921 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--Q----EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLG 777 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--~----~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~ 777 (865)
.+++.+...++.. +..+...++..+..++...+ . -+.++...++..+...+.+.. ++...+.....+.
T Consensus 817 ~i~~~~~~~l~~~----~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~~~~~il~ 890 (963)
T 2x19_B 817 AVFQCAVLALKFP----EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQA--SRSLMDCFADILF 890 (963)
T ss_dssp HHHHHHHHHTTCS----CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTS--CGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccC--ChhHHHHHHHHHH
Confidence 8999999999876 67889999999999987653 1 135677888888887776542 3444455555555
Q ss_pred hhhhhC
Q 002921 778 RLAWVC 783 (865)
Q Consensus 778 ~l~~~~ 783 (865)
.+...+
T Consensus 891 ~l~~~~ 896 (963)
T 2x19_B 891 ALNKHC 896 (963)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 554443
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.89 E-value=2.6e-20 Score=206.17 Aligned_cols=395 Identities=14% Similarity=0.148 Sum_probs=294.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC--ChhHHHHHHHHHHHHHHhcC-------cCCh---
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG-------IAGW--- 129 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~-------~~~w--- 129 (865)
+.+.++|..|...|++.-.. ........|++.+.+. +..+|..++..+.+..+..+ ...|
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 56889999999998763321 1334455677777654 78899999999999875431 1123
Q ss_pred -----HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHH
Q 002921 130 -----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLG 202 (865)
Q Consensus 130 -----~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~ 202 (865)
..+...+.+.+.++++.+ ..+..+++.++....+. ...++++|.+++.++++ ++.+|..|+.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~----------~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV----------NQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG----------TCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc----------cccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 235566778888877777 78888898888764321 12488999999999998 9999999999
Q ss_pred HHHHHhccc-cHHhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhchhhhhh--hHHHHHHHHhhhcCCCCHH
Q 002921 203 SVNQFIMLM-PSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDD 277 (865)
Q Consensus 203 ~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~ 277 (865)
+++.+++.. +..+.++.+.+++.+...+.++ +..+|..+++++..++....+.+.. ....+++.+.....+.+.+
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 999998765 4555667778889898888887 6899999999998876543322211 1123455555667788899
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhh-hHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 002921 278 VALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (865)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (865)
+|..+++++..+++. ..+.+.++++ .+++.++..+...++
T Consensus 233 vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------------- 273 (462)
T 1ibr_B 233 VRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDID------------------------------------- 273 (462)
T ss_dssp HHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSH-------------------------------------
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCch-------------------------------------
Confidence 999999999999876 5566778888 888877655432111
Q ss_pred CCccccccccHHHHHHHHHHHHHhhh-------------------C-cc----hhhhhHHHHHHhhccC----CCcchhH
Q 002921 357 DDDDIVNVWNLRKCSAAALDVLSNVF-------------------G-DE----ILPTLMPVIQAKLSAS----GDEAWKD 408 (865)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~-------------------~-~~----~~~~~~~~l~~~l~~~----~~~~~~~ 408 (865)
.+|..+..++..++... . .. .++.++|.+.+.+.+. ++++|..
T Consensus 274 ---------~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~ 344 (462)
T 1ibr_B 274 ---------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344 (462)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchH
Confidence 26777888887777652 0 01 2356677776666532 1234999
Q ss_pred HHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
|.+|..+++.++..+++ ..++.+++.+...++++++.+|.+|+.++|.+++.... ....+++..+++.+++.+
T Consensus 345 r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP----SQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT----TTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHHHh
Confidence 99999999999998774 56678899999999999999999999999999875431 123456788999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccch--hhhHHHHHHHHHHHhc
Q 002921 489 LDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAFG 530 (865)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~ 530 (865)
.|+++.||..|+++++.+++..+..+ .+|++.+++.++..++
T Consensus 418 ~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887665 5899999998877653
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.85 E-value=4.5e-17 Score=183.38 Aligned_cols=678 Identities=13% Similarity=0.046 Sum_probs=429.1
Q ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc---------CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHh
Q 002921 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (865)
Q Consensus 11 ~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~ 81 (865)
+.-++++.+++-. .+.+.+ .|++|-.-|--+.+ +.+.+..+..++.. ..++++...|...|-.....
T Consensus 5 ~~kv~~m~~i~~~-~~~~~~-~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~--~~~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 5 STKVKQMMDLTFD-LATPID-KRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV--EKDQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHHHHS-SCCSSH-HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcc-cccCHH-HHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhc--cCchhHHHHHHHHHHHHHhc
Confidence 3446667776666 466777 89988888876643 12334556666652 47788888888777766654
Q ss_pred hhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc----C-----c---------CChHHHHHHHHHhhccC
Q 002921 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG----G-----I---------AGWLELLQALVTCLDSN 143 (865)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~----~-----~---------~~w~~ll~~l~~~l~~~ 143 (865)
+-.....-.+..-.+.+...|..+++.+-..++.++..+.... . + .....++..|...+.+.
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR 160 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 3111111111122346778888888888888888888887542 1 1 12345677788888776
Q ss_pred --ChhHHhHHHHHHHHHHhhch----hhcccCCCCCCCcchhhhHHHHHHHhcC-----------CCHHHHHHHHHHHHH
Q 002921 144 --DINHMEGAMDALSKICEDIP----QVLDSDVPGLAECPINIFLPRLLQFFQS-----------PHTSLRKLSLGSVNQ 206 (865)
Q Consensus 144 --~~~~r~~al~~L~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----------~~~~vr~~a~~~l~~ 206 (865)
....|..++..|..-+..-. ..+.. ..=+..++..... -..+.|..|.-++..
T Consensus 161 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~ 230 (810)
T 3now_A 161 TISGAARDGVIELITRNVHYTALEWAERLVE----------IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLAR 230 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTCTTTTHHHHHHH----------TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHH
T ss_pred ccChhhHHHHHHHHHHhCCccccccccchhh----------HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHH
Confidence 45789999888866553211 11100 1012223333222 145789999999999
Q ss_pred Hhcccc-----HHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH--HHHHHHHhhhcCCCCHHHH
Q 002921 207 FIMLMP-----SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDDVA 279 (865)
Q Consensus 207 ~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~v~ 279 (865)
+-+.+. +.+...+..++... +..++.+-...++.++..+....++.-...+ ...++.++..+.+.++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q 307 (810)
T 3now_A 231 IYENMYYDEAKARFTDQIDEYIKDK---LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307 (810)
T ss_dssp HHHTCCSHHHHHHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHHH---hccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHH
Confidence 987654 23333344444332 3345555566678888888776655433322 2566777777888899999
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 002921 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (865)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (865)
..|++++..++..+..+..+... . ++.+...+...+
T Consensus 308 ~~A~~al~~aa~~~~~R~~I~~~--g-v~~L~~Ll~s~~----------------------------------------- 343 (810)
T 3now_A 308 RVACECLIAASSKKDKAKALCEQ--G-VDILKRLYHSKN----------------------------------------- 343 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHTTHHH--H-HHHHHHHTTCSC-----------------------------------------
T ss_pred HHHHHHHHHHcCCcHHHHHHHHc--C-cHHHHHHHcCCC-----------------------------------------
Confidence 99999999987764444444332 1 255544443211
Q ss_pred cccccccHHHHHHHHHHHHHhhhC-----c----chhhhhHHHHHHhhccC--CCcchhHHHHHHHHHHHHHhchhhhhh
Q 002921 360 DIVNVWNLRKCSAAALDVLSNVFG-----D----EILPTLMPVIQAKLSAS--GDEAWKDREAAVLALGAIAEGCIKGLY 428 (865)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~-----~----~~~~~~~~~l~~~l~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~ 428 (865)
-.+|..|...|..++...+ . ..+..+++.+.+++.++ + ...|+.|+.+|+.++........
T Consensus 344 -----~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d---~~v~~~AveaLayLS~~~~vk~~ 415 (810)
T 3now_A 344 -----DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD---KDIRRWAADGLAYLTLDAECKEK 415 (810)
T ss_dssp -----HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC---SSHHHHHHHHHHHHTTSHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHhCCcHHHHH
Confidence 0267788889988875432 1 12456788888888887 6 88999999999999876553221
Q ss_pred ccH-HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhh------------hhC-------CCcchhhH---------HH
Q 002921 429 PHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ------------DIG-------HQNGREQF---------EK 479 (865)
Q Consensus 429 ~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------~~~-------~~~~~~~~---------~~ 479 (865)
-.. ...+|.++..++++++.++..|.++|++++..... ... +....... ..
T Consensus 416 lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 111 35788888888888999999999999999874210 000 00000111 24
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhh--HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc
Q 002921 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (865)
Q Consensus 480 ~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 557 (865)
.++.++..+.++++.+|+.|+++|.+++.... .... -...++.|+.++.+.....++.+..+++.++....+....
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~--~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGLKE--LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 68899999999999999999999999985321 1111 1246777888888877778889999999988754432100
Q ss_pred hh-hHhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002921 558 PV-YLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (865)
Q Consensus 558 ~~-~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 633 (865)
.. .....+|+|++.+... .+.. ...++.++++++..-. .....+ ...++.+.+++.+ .+
T Consensus 574 ~~~~~~~aIppLv~LL~~~--~~~l~~~eAl~AL~NLa~~~d-~~~~~Ii~aG~l~~Lv~LL~s--------------~~ 636 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQD--CTALENFESLMALTNLASMNE-SVRQRIIKEQGVSKIEYYLME--------------DH 636 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHS--------------CC
T ss_pred cchhhhcHHHHHHHHhCCC--CcHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHcC--------------CC
Confidence 01 1234788888887531 1111 1356677777764311 111000 1234555555542 14
Q ss_pred cchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHH
Q 002921 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAK 711 (865)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~ 711 (865)
..++..+..++++++..-. ....++.....++.|..++...+..+|..|+++|+.++..........+. ..++.+..
T Consensus 637 ~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 637 LYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp TTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 4677888999998876322 22333321248889999999999999999999999999865544444443 57888888
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHH--HHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhh
Q 002921 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM--TVVLCLVPILKHSEELNKSLIENSAITLGRLAWV 782 (865)
Q Consensus 712 ~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 782 (865)
.+.+. +.+++..|+|++++++...+. ...++. ..++.+..++..++.-...+++.+..+|..+...
T Consensus 716 LL~s~----d~~vq~~A~~aL~NL~~~s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 716 LIANP----SPAVQHRGIVIILNMINAGEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHTCS----SHHHHHHHHHHHHHHHTTCHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHCCC----CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 88887 789999999999999874332 222221 2566677776554212466888888888877753
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=2.2e-17 Score=181.85 Aligned_cols=392 Identities=10% Similarity=0.072 Sum_probs=279.8
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChH------HHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcc
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL------ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~------~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
.+.+++.+.++++.+|..++..+..++.......+. .+++.|.+.+.++ ++.+|..++.+|..++....+...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 356777888899999999999999988643222221 5788999999988 889999999999999875433211
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCC-CCHHHHHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSND-PSAEVRKLVCAAF 245 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~r~~~~~~l 245 (865)
. -.-...+|.+.+.++++++.+|..|+.+|+.+....+..-...+ ...++.+...+.+ .+..+|..++.+|
T Consensus 102 ~-------~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 102 I-------VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp H-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred H-------HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0 01146899999999999999999999999999876432211111 2356777777774 6889999999999
Q ss_pred HHHHhhc-hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhhh
Q 002921 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESL 323 (865)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~ 323 (865)
..++... +..-......+++.++..+.+.+++++..++.++..++... ........ ..+++.++..+...
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~------ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHN------ 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCS------
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCC------
Confidence 9999754 33222334667777777888889999999999999988752 11111111 24566665554421
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcc---hh-hhhHHHHHHhhc
Q 002921 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLS 399 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~~~~l~~~l~ 399 (865)
++.+|..|..+++.++...+.. ++ ..+++.+.+.+.
T Consensus 247 ----------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 247 ----------------------------------------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred ----------------------------------------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 1347899999999988754321 12 247888888898
Q ss_pred cCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhh-H
Q 002921 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-F 477 (865)
Q Consensus 400 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~ 477 (865)
+++ +..|..|+.+|+.++.+..+.....+. .+++.++..+.++++.+|..|+|++++++....+. ..... -
T Consensus 287 ~~~---~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~l~~ 359 (450)
T 2jdq_A 287 SPK---ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE----QIKYLVE 359 (450)
T ss_dssp CSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH----HHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH----HHHHHHH
Confidence 888 999999999999999876655444442 58888889999999999999999999998752110 11112 2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHH-----HHHHHHHhcccchhhHHHHHHHHH
Q 002921 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIG 545 (865)
Q Consensus 478 ~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~i-----~~~l~~~l~~~~~~~~~~~~~~l~ 545 (865)
..+++.++..+.++++.+|..|+.+|.+++..... ...+|...+ ++.+..+..+.+..++..+..++.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35889999999999999999999999999986532 234566655 456666555555555555666555
Q ss_pred HHH
Q 002921 546 TLA 548 (865)
Q Consensus 546 ~l~ 548 (865)
.+.
T Consensus 440 ~~~ 442 (450)
T 2jdq_A 440 HYF 442 (450)
T ss_dssp HHH
T ss_pred HHC
Confidence 443
No 26
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.82 E-value=3.3e-15 Score=181.00 Aligned_cols=399 Identities=9% Similarity=0.060 Sum_probs=252.1
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC--CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (865)
|..|.++..+|..++...++. .++.+.+.+-..+. ..+++.|.++++++|.+++.+... ....++..+++.
T Consensus 427 ~~~~~~~~~~L~~l~~~~~~~---~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~----~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 427 IQLYKSEREVLVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED----TEKRFVVTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCch----hhHHHHHHHHHH
Confidence 445666667777776444432 23334444444443 467899999999999887654321 122456777777
Q ss_pred HHHHHc-----CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCC--
Q 002921 484 LLKRIL-----DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN-- 556 (865)
Q Consensus 484 l~~~l~-----d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~-- 556 (865)
+..... |+++.|+..+|++++.+.+..... ..|++.+++.++..+.+.+.+++..+..++..+++.++..+.
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~ 578 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ 578 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSC
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 766432 345677778999999988765443 468899999999999877778888999999999998776541
Q ss_pred ----chhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHh-hcccccC
Q 002921 557 ----QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA--GFTQFAQPVFQRCINIIQTQQLAK-VDSVAAG 629 (865)
Q Consensus 557 ----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~ 629 (865)
..||++.++..+.+.+.... ..+...++++++.++.+.+. ...+|+..+++.+++.+....... .+++..
T Consensus 579 ~~~~~~p~~~~il~~l~~~~~~~~--~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 655 (1049)
T 3m1i_C 579 QPRESEPFIQTIIRDIQKTTADLQ--PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLL- 655 (1049)
T ss_dssp CTTCSSCHHHHHHHTHHHHHTTSC--HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGG-
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh-
Confidence 01788999988888776532 22345788999999988873 477888888877766555432211 111100
Q ss_pred CCCCcc---hhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcC------------CC-----h------hHHHHH
Q 002921 630 AQYDKE---FVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD------------DA-----S------DVRQSA 683 (865)
Q Consensus 630 ~~~~~~---~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~------------~~-----~------~vr~~a 683 (865)
. +.+ .....+.+++.++..+|..|.|+++. +++-+...++. +. + .+....
T Consensus 656 ~--d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~--i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l 731 (1049)
T 3m1i_C 656 L--DSETVKIIANIIKTNVAVCTSMGADFYPQLGH--IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEI 731 (1049)
T ss_dssp G--SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred c--CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHH
Confidence 0 111 12345677888889999998887764 33322222111 00 0 111122
Q ss_pred HHHHHHHHhhc---hhhhHhhHHHHHHHHHHhcCCCCCCCchhH-HHHHHHHHHHHHHhccccccchHHHHHHHHHHH--
Q 002921 684 FALLGDLARVC---PVHLQARLSDFLDIAAKQLNTPKLKETVSV-ANNACWAIGELAVKARQEISPIVMTVVLCLVPI-- 757 (865)
Q Consensus 684 ~~~l~~l~~~~---~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~-- 757 (865)
..++..+.... +..+.|+++.++..+....... .... ...++.+++.++...++.+.||+..++..+...
T Consensus 732 ~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~----~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~ 807 (1049)
T 3m1i_C 732 LKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNN----VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTL 807 (1049)
T ss_dssp HHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHS----CGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC----CcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 22233322222 1224577777776666654321 0111 135778899999998888888888877766655
Q ss_pred --hcCchhhhhhHHHHHHHHHHhhhhhCCCcccc----cHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 002921 758 --LKHSEELNKSLIENSAITLGRLAWVCPELVSP----HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 758 --l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 824 (865)
+.+..+..+++++.....++++...+|..+.+ .+..+++..+.++.. .+....+.+++.+..++..
T Consensus 808 ~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~-~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 808 DMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKH-NNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHH
Confidence 33211125779999999999999988876543 245566666666643 4667788888888888775
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.82 E-value=5.3e-16 Score=174.71 Aligned_cols=681 Identities=11% Similarity=0.049 Sum_probs=431.1
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHHH------hhhCcCCHhHHHHHHHHHhhhhhC-CChhHHHHHHHHHHHHHHhc
Q 002921 52 YLAFILARAEGKSVEIRQAAGLLLKNNLR------TAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 52 ~l~~il~~~~~~~~~~R~~a~~~L~~~i~------~~w~~~~~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~ 124 (865)
-.++|+-+ .+.+.+-|..|+.-|--..+ ..|. ..-...+.+++.+ .++.+.-.+..+++.++...
T Consensus 10 ~m~~i~~~-~~~~~~~~~~a~~nl~vl~re~aga~~i~~-------~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~ 81 (810)
T 3now_A 10 QMMDLTFD-LATPIDKRRAAANNLVVLAKEQTGAELLYK-------DHCIAKVASLTKVEKDQDIYVNMVHLVAALCENS 81 (810)
T ss_dssp HHHHHHHS-SCCSSHHHHHHHHHHHHHSSCHHHHHHHHH-------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcc-cccCHHHHHHHHhhceeeeccccchHHHHh-------CchHHHHHHHHhccCchhHHHHHHHHHHHHHhcc
Confidence 34566553 46677888888765533322 1222 1223355666665 78999999888999888753
Q ss_pred C---cCChHHH-HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCC----C---CcchhhhHHHHHHHhcCC-
Q 002921 125 G---IAGWLEL-LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL----A---ECPINIFLPRLLQFFQSP- 192 (865)
Q Consensus 125 ~---~~~w~~l-l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~----~---~~~~~~l~~~l~~~l~~~- 192 (865)
. ...|.++ +|.+.+.+.++++....++..++..++..+........++- . ...++.++..++..+++.
T Consensus 82 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (810)
T 3now_A 82 VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRT 161 (810)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccc
Confidence 1 1223333 57788889898888888999999888887765433222110 0 134677788888888885
Q ss_pred -CHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCC---C--------CHHHHHHHHHHHHHHHhhch-hhhh
Q 002921 193 -HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND---P--------SAEVRKLVCAAFNLLIEVRP-SFLE 257 (865)
Q Consensus 193 -~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~---~--------~~~~r~~~~~~l~~l~~~~~-~~~~ 257 (865)
+...|..++..+...+.+........+ ..-+..++..... . .+++|..+.-++..+.+... +.-.
T Consensus 162 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~ 241 (810)
T 3now_A 162 ISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK 241 (810)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH
T ss_pred cChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhH
Confidence 678999999999888744211111111 1122333332221 1 35789988889988887654 1112
Q ss_pred hhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhh--hhhHHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002921 258 PHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF--LPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (865)
Q Consensus 258 ~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (865)
.... .+-.++...+...+.+-...|+.++..+... ..+.-... -+..++.++..+...++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g--~~~~~~~~~~~~G~v~~li~Ll~s~~~--------------- 304 (810)
T 3now_A 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG--PLDVGNQVVAREGILQMILAMATTDDE--------------- 304 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSS--SHHHHHHHHHTTTHHHHHHHHHHSSCH---------------
T ss_pred HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcC--CHHHHHHHHhccchHHHHHHHhCCCCH---------------
Confidence 2222 2223333345556666677888888887665 22211111 13455555554443111
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC--cchhhhhHHHHHHhhccCCCcchhHHHHH
Q 002921 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAA 412 (865)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~r~~a 412 (865)
..+..|.+++..++..-. +.+...-.|.+...+++++ ...|.-|
T Consensus 305 -------------------------------~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~---~~vr~~A 350 (810)
T 3now_A 305 -------------------------------LQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKN---DGIRVRA 350 (810)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSC---HHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCC---HHHHHHH
Confidence 257778888887655521 2333333588888888777 8889999
Q ss_pred HHHHHHHHhchh-----hhhh-ccHHHHHHHHHhccCCC--ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH--HHHHH
Q 002921 413 VLALGAIAEGCI-----KGLY-PHLSEIVAFLIPLLDDK--FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLM 482 (865)
Q Consensus 413 ~~~l~~l~~~~~-----~~~~-~~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~ 482 (865)
+.+|..++.... ..+. .-+..+++.+.+.|.++ ++.+|..|+|+|..++..-.. ..... ..+++
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v------k~~lv~d~g~Ip 424 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC------KEKLIEDKASIH 424 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH------HHHHHHCHHHHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH------HHHHHHccchHH
Confidence 999999975332 1222 23567888888988887 889999999999998764321 22222 47889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhccc--------h----------------hhhHH---------HHHHHHHHHh
Q 002921 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEE--------L----------------APRLE---------IILQHLMMAF 529 (865)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~--------~----------------~~~~~---------~i~~~l~~~l 529 (865)
.|++.+.++++.++..|.++|++++...... + ..+.. ..++.|+.++
T Consensus 425 ~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL 504 (810)
T 3now_A 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504 (810)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999888999999999999998743100 0 00111 4688889999
Q ss_pred cccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccc--ccc-chHH
Q 002921 530 GKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG--FTQ-FAQP 606 (865)
Q Consensus 530 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~-~~~~ 606 (865)
.+.+..++..+.++++.++.... ....-.-...+|.|+..+.+.. ......+..+++.++....+. |.. ....
T Consensus 505 ~s~s~~vqe~Aa~aL~NLA~d~~--~r~~Vv~~Gaip~Lv~LL~s~~--~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 505 KTESHNSQELIARVLNAVCGLKE--LRGKVVQEGGVKALLRMALEGT--EKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp TCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHccCC--HHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 98888889999999999974211 1100112356788888887532 112256778888887654332 211 1223
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHH
Q 002921 607 VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFAL 686 (865)
Q Consensus 607 i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~ 686 (865)
.++.+++.|... .+......++.++++++..-.+.-...+.. ..+|.+..++.+.+..++..|+++
T Consensus 581 aIppLv~LL~~~-------------~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a-G~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 581 VIRPLLNLLQQD-------------CTALENFESLMALTNLASMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp THHHHHHTTSTT-------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHHHHHhCCC-------------CcHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHH
Confidence 566666655421 011122346667777765422222223332 467888888888899999999999
Q ss_pred HHHHHhhchhhhHhhHH--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchH--HHHHHHHHHHhcCch
Q 002921 687 LGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIV--MTVVLCLVPILKHSE 762 (865)
Q Consensus 687 l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~ 762 (865)
++.++... +....+.. ..++.+...+++. +..++..|+++|+.+....+......+ ...++.++.++..++
T Consensus 647 L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~----d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 647 LCNLVMSE-DVIKMFEGNNDRVKFLALLCEDE----DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCS----SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHhCCh-HHHHHHHhccCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 99998743 33334442 4788898988887 789999999999999875433322223 246778888888763
Q ss_pred hhhhhHHHHHHHHHHhhhhhCCCcccccH--HHHHHHHHHHhccC--CChHHHHHHHHHHHHHHhh
Q 002921 763 ELNKSLIENSAITLGRLAWVCPELVSPHM--EHFMQPWCIALSMI--RDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 763 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~l~~~~~~l~~~--~~~~~~~~~~~~l~~l~~~ 824 (865)
..++..++.+++.+....++. ..++ ...++.++..+... ++....+.++.+|.++++.
T Consensus 722 ---~~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 722 ---PAVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 678999999999998643322 2222 23566666666543 4677888999999999986
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.80 E-value=3.7e-17 Score=179.97 Aligned_cols=364 Identities=14% Similarity=0.086 Sum_probs=259.4
Q ss_pred cCChHHH---HHHHHHhhccCChhHHhHHHHHHHHHHhhc-hhhcccCCCCCCCcch-h-hhHHHHHHHhcCC-CHHHHH
Q 002921 126 IAGWLEL---LQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDVPGLAECPI-N-IFLPRLLQFFQSP-HTSLRK 198 (865)
Q Consensus 126 ~~~w~~l---l~~l~~~l~~~~~~~r~~al~~L~~l~~~~-~~~~~~~~~~~~~~~~-~-~l~~~l~~~l~~~-~~~vr~ 198 (865)
...|++. ++.+.+.++++++.+|..|+..|+.++... ..... ..+ . .++|.+++.++++ ++.+|.
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~--------~~~~~~~~i~~L~~~L~~~~~~~v~~ 83 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID--------EVISTPGVVARFVEFLKRKENCTLQF 83 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH--------HHHTSTTHHHHHHHHHTCTTCHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH--------HHHHcCCcHHHHHHHHCCCCCHHHHH
Confidence 5689887 999999999999999999999999886521 11110 011 2 6899999999998 899999
Q ss_pred HHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH-HHHHHHHhhhcCC-CC
Q 002921 199 LSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKD-TD 275 (865)
Q Consensus 199 ~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~l~~~~~~-~~ 275 (865)
.|+.++..+....++...... ...++.++.++.++++.+|..++.+|..++...++.-...+ ..+++.++..+.+ .+
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~ 163 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 163 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC
Confidence 999999999875443322222 34688888889988999999999999999976544322222 2456667777764 68
Q ss_pred HHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCC
Q 002921 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (865)
Q Consensus 276 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (865)
.+++..++.++..++..... ..-......+++.++..+...+
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~------------------------------------- 205 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSP-PPEFAKVSPCLNVLSWLLFVSD------------------------------------- 205 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSS-CCCGGGTGGGHHHHHHHTTCCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHccCC-------------------------------------
Confidence 89999999999999865211 1111233566777666554211
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhhCc---c-hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH
Q 002921 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (865)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 431 (865)
..+|..+..++..++...++ . ....+++.+...+.+++ |..|..++.+|+.++.+..+.....+
T Consensus 206 ---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 206 ---------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND---YKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp ---------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc---hhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 13688889999888765422 1 12346788888888888 99999999999999987654332222
Q ss_pred H-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 002921 432 S-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (865)
Q Consensus 432 ~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (865)
. .+++.+...+.++++.+|..|++++++++...... ..... ..+++.++..+.++++.||..|++++++++..
T Consensus 274 ~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-----IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 2 47888999999999999999999999998632211 11222 36788889999998999999999999999976
Q ss_pred h-ccchhhhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 510 A-AEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 510 ~-~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
. .+.....+ ..+++.|+..+++.+..++..++.++..++...+
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3 23333333 3588889999988878888899999998887543
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.80 E-value=3.8e-17 Score=183.18 Aligned_cols=393 Identities=11% Similarity=0.105 Sum_probs=279.9
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChH-----HHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhccc
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL-----ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~-----~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
...+++.|.++++.+|..++..+..++.......+. .++|.|.+.+.++ ++.+|..|+.+|..++.........
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 356677788889999999999999998764333332 4688999999987 8999999999999998854332110
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 247 (865)
-.-...+|.+++.+.++++.+|..|+.+|+.++...+..-... -...++.++.++.+++..++..++.+|..
T Consensus 169 -------~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 169 -------VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp -------HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 0114668899999999999999999999999987543211111 12457778888888889999999999999
Q ss_pred HHhhc-hhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhh-hHHHHHHhhccCChhhhhhhh
Q 002921 248 LIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVE 325 (865)
Q Consensus 248 l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~ll~~l~~~~~d~~~~~ 325 (865)
++... +..-......+++.++..+.+.+++++..++.++..++.. ........+. .+++.++..+...
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~-------- 311 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHE-------- 311 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCS--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCC--------
Confidence 99754 3322334456777888888888999999999999999865 2222232332 5666666655421
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---chh-hhhHHHHHHhhccC
Q 002921 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSAS 401 (865)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~~ 401 (865)
+|.+|..|..+|+.++...+. .++ ..+++.+...+.++
T Consensus 312 --------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 312 --------------------------------------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred --------------------------------------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC
Confidence 134788899999888765432 111 35778888889888
Q ss_pred CCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH--H
Q 002921 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--E 478 (865)
Q Consensus 402 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~ 478 (865)
+ |..|..|+++|+.++.+..+.....+ ..+++.++..+.++++.+|..|+|+|++++....+. .....++ .
T Consensus 354 ~---~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~~~l~~~ 427 (530)
T 1wa5_B 354 K---ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR---PDIIRYLVSQ 427 (530)
T ss_dssp C---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC---THHHHHHHHT
T ss_pred C---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHC
Confidence 8 99999999999999987665444333 247788888888899999999999999998864210 0011222 2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHH-----HHHHHHHhcccchhhHHHHHHHHHH
Q 002921 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIGT 546 (865)
Q Consensus 479 ~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~i-----~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (865)
.+++.++..+.++++.|+..++.+|.+++..... ...+|...+ ++.|..+..+.+..++..+..++..
T Consensus 428 ~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 428 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999999999986532 223444433 5556555555555555555555554
Q ss_pred HH
Q 002921 547 LA 548 (865)
Q Consensus 547 l~ 548 (865)
+.
T Consensus 508 ~~ 509 (530)
T 1wa5_B 508 YF 509 (530)
T ss_dssp HS
T ss_pred HC
Confidence 43
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.78 E-value=8.3e-16 Score=173.47 Aligned_cols=434 Identities=11% Similarity=0.091 Sum_probs=296.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---cC-CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~---~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~ 92 (865)
+.++-+.+.+++.. .|+.|-..+--+. .+ +.....++..+. +.+...|+.+...+.+.... .++...
T Consensus 15 ~~~i~~~L~~~~~~-~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~~~-----~~e~~~ 85 (591)
T 2vgl_B 15 IFELKAELNNEKKE-KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ---TDNLELKKLVYLYLMNYAKS-----QPDMAI 85 (591)
T ss_dssp HHHHHHHTTSSCHH-HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS---SSCHHHHHHHHHHHHHHHHH-----SHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHHHCCCChHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccc-----CchHHH
Confidence 34444455577777 7777777766533 22 223444555443 67899999999998876553 344444
Q ss_pred HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCC
Q 002921 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (865)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (865)
.+.+.+.+.|.++++.+|..+..+++.+ ..++.++.+++.+.+++.++++.+|..|+.++..+++..++...
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----- 157 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----- 157 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc-----
Confidence 4567777888999999998776555554 45678899999999999999999999999999999885543221
Q ss_pred CCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHH-hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 173 ~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
-..+++.+.+.+.|+++.|+..|+.++..+....++. .....+..+..++..+.+.++-.+...++++..+...
T Consensus 158 -----~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 158 -----DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp -----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred -----cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 1368899999999999999999999999998765432 2222333445555555455565665555555443322
Q ss_pred chhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccC-CchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccC
Q 002921 252 RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (865)
Q Consensus 252 ~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~ 330 (865)
. ......+++.+...+++.+..|+..|+.++..+...- .....++.....+.+.++..+. .+
T Consensus 233 ~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d------------ 295 (591)
T 2vgl_B 233 D----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GE------------ 295 (591)
T ss_dssp S----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SC------------
T ss_pred C----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CC------------
Confidence 1 1345677888888888999999999999999886431 1223344444555554443221 10
Q ss_pred CCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHH
Q 002921 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (865)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~ 410 (865)
.++|..|...+..+....++.+.+.+-.++ ...+.+ +..|.
T Consensus 296 ----------------------------------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~---~~Ir~ 336 (591)
T 2vgl_B 296 ----------------------------------PEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDP---IYVKL 336 (591)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSC---HHHHH
T ss_pred ----------------------------------ccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCCh---HHHHH
Confidence 137999999999999887764433222111 122334 89999
Q ss_pred HHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC
Q 002921 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (865)
Q Consensus 411 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d 490 (865)
.++..++.++.. ..+..+++.+...+.+.+..+|..++++++.++..++ .....+++.+++.+.+
T Consensus 337 ~al~~L~~l~~~------~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~---------~~~~~~v~~Ll~ll~~ 401 (591)
T 2vgl_B 337 EKLDIMIRLASQ------ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE---------QSAERCVSTLLDLIQT 401 (591)
T ss_dssp HHHHHHHHTCCS------STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCh------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh---------hHHHHHHHHHHHHHcc
Confidence 999998887642 2356678888888999999999999999999987653 3456788888899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch-hhHHHHHHHHHHH
Q 002921 491 TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTL 547 (865)
Q Consensus 491 ~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~l~~l 547 (865)
....|+..+..++..++...++.- ..++..|...+.+... ..+..+++++|..
T Consensus 402 ~~~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 402 KVNYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 888999999889998887654332 2344455566654433 3455666666644
No 31
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.78 E-value=1.8e-16 Score=178.84 Aligned_cols=436 Identities=13% Similarity=0.085 Sum_probs=307.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCcHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHH
Q 002921 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (865)
Q Consensus 18 ~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~ 95 (865)
..++.-..+++.. .|+.+..++..+.+ +|+....+...+..+ .+.++.+|..|...|.+. ..++....+.
T Consensus 52 ~~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~ 123 (591)
T 2vgl_B 52 PDVVNCMQTDNLE-LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLC 123 (591)
T ss_dssp HHHHHTTSSSCHH-HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHH
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHH
Confidence 3444445677777 99999999998765 677644333433221 367899999887655322 2566777788
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChH--HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~--~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
..+.+++.++++.||+.++.++..+++.. ++.++ .+++.+.+.+.++++.++.+|+.+|..+++.-+... .
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~--~---- 196 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN--L---- 196 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC--S----
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc--c----
Confidence 88889999999999999999999999965 56776 599999999999999999999999999987654320 0
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh--
Q 002921 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-- 251 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~-- 251 (865)
-...+..++.+++.+.+.++-.+...++++..+.... .+....+++.+...+++.++.++..++.++..+...
T Consensus 197 -~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 -LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp -CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred -hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 0234566778888888888888888888776655322 123456677888888888899999999999887642
Q ss_pred -chhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccC
Q 002921 252 -RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (865)
Q Consensus 252 -~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~ 330 (865)
.++.+......+.+.++... +.+.++|..++..+..++.. .++.+.+++..+ ++.
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~--~p~~~~~~~~~~-------~~~-------------- 327 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQK--RPEILKQEIKVF-------FVK-------------- 327 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH--CCSTTTTCTTTT-------SCC--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh--ChHHHHHHHHhh-------eec--------------
Confidence 34455544556666555444 47889999999999888664 222222222111 000
Q ss_pred CCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHH
Q 002921 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (865)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~ 410 (865)
. + +++.+|..|.+++..++ .+.-+..+++.+..++.+.+ +..|.
T Consensus 328 -----------------------~--~-----d~~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d---~~~r~ 371 (591)
T 2vgl_B 328 -----------------------Y--N-----DPIYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVD---VDFVR 371 (591)
T ss_dssp -----------------------T--T-----SCHHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSC---HHHHH
T ss_pred -----------------------c--C-----ChHHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCC---HHHHH
Confidence 0 0 01458998988886654 33445677888888888888 99999
Q ss_pred HHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC
Q 002921 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (865)
Q Consensus 411 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d 490 (865)
.++.+++.++...+ +....+++.++..+.+....++..+..++..+....+. .. ..++..+.+.+.+
T Consensus 372 ~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-----~~----~~~v~~L~~~l~~ 438 (591)
T 2vgl_B 372 KAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-----KY----ESIIATLCENLDS 438 (591)
T ss_dssp HHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-----SC----CTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-----hH----HHHHHHHHHHHHh
Confidence 99999999998765 34466788888888999999999998888888776542 11 2344556666664
Q ss_pred -CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 002921 491 -TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 491 -~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (865)
.++.++..++|++|.+.....+ .+.+++.+.+.+......++..++.++..+....
T Consensus 439 ~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 439 LDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp CCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 5788999999999987654322 3455666655555555567777777777776544
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.77 E-value=1.8e-15 Score=175.85 Aligned_cols=528 Identities=11% Similarity=0.041 Sum_probs=322.7
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCC
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (865)
...+++.|.+++..+|..++..++.+.+..- -...++.|.+++.++++.+|+.|+.+|..++........-
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i------ 187 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI------ 187 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH------
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH------
Confidence 3567888888888999998888876643321 1456777777788889999999999999998754322100
Q ss_pred CcchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 175 ECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
...+.+++.+++.|.+. ++.+|..|+.+|..+.... .. ...+ ...++.++.++.++++.++..++.+|..++..
T Consensus 188 -~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 188 -MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp -TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 01257889999999754 8999999999999976542 11 1111 14678888989988999999999999999987
Q ss_pred chhhhhhhH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccC
Q 002921 252 RPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (865)
Q Consensus 252 ~~~~~~~~l-~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~ 330 (865)
.+..-.... ...++.++..+.+.+.+++..++.++..++.. ....
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~e~-------------------------------- 310 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--NQES-------------------------------- 310 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHHH--------------------------------
T ss_pred ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHH--------------------------------
Confidence 654433332 35677777777777777777776666554321 0000
Q ss_pred CCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHH
Q 002921 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (865)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~ 410 (865)
|... . .. ..++.+...+.+.+. ...++
T Consensus 311 -------------------------------------~~~i-------~---~~----~~i~~Lv~lL~~~~~--~~~~~ 337 (780)
T 2z6g_A 311 -------------------------------------KLII-------L---AS----GGPQALVNIMRTYTY--EKLLW 337 (780)
T ss_dssp -------------------------------------HHHH-------H---TT----THHHHHHHHHTTCCC--HHHHH
T ss_pred -------------------------------------HHHH-------H---Hc----CCHHHHHHHHhcCCH--HHHHH
Confidence 0000 0 00 112222233333331 34455
Q ss_pred HHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc
Q 002921 411 AAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (865)
Q Consensus 411 ~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 489 (865)
.+..++..++.. .+.....+ ..+++.++..+.++++.++..|++++.+++..... ......+++.+++.+.
T Consensus 338 ~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-------~~~~~~~i~~Lv~lL~ 409 (780)
T 2z6g_A 338 TTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-------QEGMEGLLGTLVQLLG 409 (780)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-------CSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-------hhhhhhHHHHHHHHHc
Confidence 566666666642 21111111 23678889999999999999999999999875432 1223578999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccchhhh-HHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHhccc--CCchhhHhhh
Q 002921 490 DTNKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFE--LNQPVYLDIL 564 (865)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~l 564 (865)
+.++.+|..|+.+|++++.......... -...++.|+..+.+.. ..++..++.+++.++...+.. ....-.....
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 9999999999999999875422111111 1235667777776533 267778888888775322110 0000011345
Q ss_pred hHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHH-hhcc-----c--ccCCCCC
Q 002921 565 MPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLA-KVDS-----V--AAGAQYD 633 (865)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~-~~~~-----~--~~~~~~~ 633 (865)
+|.+.+.+... .+..+ ..++.++++++.. ......+ ..+++.+++.|...... +... + -......
T Consensus 490 l~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 490 LPVVVKLLHPP--SHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp HHHHHHTTSTT--CCHHHHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred HHHHHHHhcCC--ChHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 67777777643 22233 5677788888742 2111111 13567777777653211 1000 0 0000012
Q ss_pred cchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHH--HHHHHHH
Q 002921 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSD--FLDIAAK 711 (865)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~l~~l~~ 711 (865)
.+++..+..+++.++.. ......+.....+|.|...+.+.+..++..|..+++.++.. ......+.+ .++.+.+
T Consensus 566 ~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~ 641 (780)
T 2z6g_A 566 EEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTE 641 (780)
T ss_dssp HHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHH
Confidence 24556666666666531 11112221125788888999999999999999999998743 333334443 5777778
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 002921 712 QLNTPKLKETVSVANNACWAIGELAVKARQ 741 (865)
Q Consensus 712 ~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 741 (865)
.+.+. +.++|.+|+++|+.++...+.
T Consensus 642 Ll~~~----~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 642 LLHSR----NEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp GGGCS----CHHHHHHHHHHHHHHHTTSCT
T ss_pred HHcCC----CHHHHHHHHHHHHHHHcCChH
Confidence 88777 789999999999999987653
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.76 E-value=2.2e-16 Score=177.03 Aligned_cols=402 Identities=13% Similarity=0.104 Sum_probs=284.4
Q ss_pred CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhh-hCcCCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHhc
Q 002921 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~-w~~~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~ 124 (865)
.+.+..+...+. +.++.+|..|+..|++.+... -..+..-....+.+.|++.|.++ ++.+|..++.+++.++...
T Consensus 86 ~~~i~~lv~~L~---s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 86 QQELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp -CCHHHHHHHHS---CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 355777888876 457899999999998887542 11111112234567788888886 8999999999999998753
Q ss_pred C--cCCh--HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHH
Q 002921 125 G--IAGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (865)
Q Consensus 125 ~--~~~w--~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a 200 (865)
+ ...+ ...++.|.+.+.++++.+|..|+.+|+.++...+..... -....+++.+++.+.+++..++..|
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-------VLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH-------HHHcCcHHHHHHHhccCCHHHHHHH
Confidence 1 1111 345788888888899999999999999998754321100 0114578999999999999999999
Q ss_pred HHHHHHHhccc-cHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHH
Q 002921 201 LGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDV 278 (865)
Q Consensus 201 ~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v 278 (865)
+.+|..++... +..-......+++.+..++.++++.++..++.+|..++...++.....+. .+++.++..+.+.++.+
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 99999999654 32222233456788888888888999999999999999766554444333 56777888888889999
Q ss_pred HHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 002921 279 ALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (865)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (865)
+..|+.++..++.. ........+ ..+++.++..+...
T Consensus 316 ~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~---------------------------------------- 353 (530)
T 1wa5_B 316 QTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSP---------------------------------------- 353 (530)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCS----------------------------------------
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCC----------------------------------------
Confidence 99999999998765 222222222 25666666555431
Q ss_pred CccccccccHHHHHHHHHHHHHhhhCcc---hh-hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh--hhhccH
Q 002921 358 DDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPHL 431 (865)
Q Consensus 358 ~~d~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l 431 (865)
.+.+|..|..+|+.++...++. ++ ..+++.+...+.+++ +..|..|+.+|+.++.+... ....++
T Consensus 354 ------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 354 ------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1358999999999988643321 11 356778888888888 99999999999999886442 222233
Q ss_pred HH--HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhC--CCcchhhHHH-----HHHHHHHHHcCCCHHHHHHHHHH
Q 002921 432 SE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEK-----VLMGLLKRILDTNKRVQEAACSA 502 (865)
Q Consensus 432 ~~--i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~-----~~~~l~~~l~d~~~~vr~~a~~a 502 (865)
-. +++.++..+.++++.+|..++++|..+......... .....++... .++.+.....+++..|+..|..+
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 23 788899999999999999999999999886543100 0001222222 35666666778899999999998
Q ss_pred HHHHHHH
Q 002921 503 FATLEEE 509 (865)
Q Consensus 503 l~~l~~~ 509 (865)
+.++...
T Consensus 505 l~~~~~~ 511 (530)
T 1wa5_B 505 IETYFGE 511 (530)
T ss_dssp HHHHSSS
T ss_pred HHHHCCc
Confidence 8877643
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.75 E-value=1.3e-15 Score=170.72 Aligned_cols=389 Identities=11% Similarity=0.103 Sum_probs=275.5
Q ss_pred HHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCCh-----HHHHHHHHHhhccCC-hhHHhHHHHHHHHHHhhchhhccc
Q 002921 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w-----~~ll~~l~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
.+.+++.|.++++.+|..++..++.++........ ...+|.|.+.+.+++ +.+|..|+.+|+.++.........
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35677788888999999999999999876532222 246788999998886 899999999999999864432110
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHH--HHHHHHHHhh-CCCCHHHHHHHHHHH
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLS-NDPSAEVRKLVCAAF 245 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~-~~~~~~~r~~~~~~l 245 (865)
-.-...+|.+++.+.++++.+|..|+.+|++++...+. ....+- ..++.++..+ .+.+..++..++.+|
T Consensus 156 -------~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 156 -------VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp -------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred -------HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 01135789999999999999999999999999865332 111111 3567777777 567889999999999
Q ss_pred HHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhhhh
Q 002921 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 246 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~~ 324 (865)
..++...+..-......+++.++..+.+.+++++..++.++..++.. ........+ ..+++.++..+...+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~------ 299 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPS------ 299 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSC------
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCC------
Confidence 99998754443345567888888888899999999999999999865 222222222 245666665554321
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcc---hh-hhhHHHHHHhhcc
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLSA 400 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~~~~l~~~l~~ 400 (865)
+.+|..|..+|+.++...+.. ++ ..+++.+...+.+
T Consensus 300 ----------------------------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 300 ----------------------------------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS
T ss_pred ----------------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC
Confidence 237888999999988744321 11 3467888888888
Q ss_pred C-CCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-
Q 002921 401 S-GDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF- 477 (865)
Q Consensus 401 ~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~- 477 (865)
+ + +..|..|+++|+.++.+..+.....+. .+++.++..+.+.++.+|..|+++|++++....+ ....++
T Consensus 340 ~~~---~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-----~~~~~l~ 411 (528)
T 4b8j_A 340 NLK---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-----DQIKYLV 411 (528)
T ss_dssp CCC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-----HHHHHHH
T ss_pred CCc---HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHH
Confidence 7 7 999999999999999865544333222 4678888888888999999999999999876211 122222
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHH-----HHHHHHHhcccchhhHHHHHHHH
Q 002921 478 -EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAI 544 (865)
Q Consensus 478 -~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~i-----~~~l~~~l~~~~~~~~~~~~~~l 544 (865)
..+++.++..+.++++.++..++.+|.+++..... ...+|...+ ++.+..+..+.+..+...+...+
T Consensus 412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il 491 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 491 (528)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35788899999999999999999999999876532 222333322 34455544444444555555555
Q ss_pred HHH
Q 002921 545 GTL 547 (865)
Q Consensus 545 ~~l 547 (865)
..+
T Consensus 492 ~~~ 494 (528)
T 4b8j_A 492 EAY 494 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.72 E-value=7.7e-14 Score=157.80 Aligned_cols=473 Identities=9% Similarity=0.021 Sum_probs=288.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
+.+.+.|..+-..+.++.. -.++..-.+.+.+.+.|.++++.+|..+..+++.|.. ++..+.+++.+.+++.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~-----~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLD-----ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLK 152 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHc
Confidence 5677888888776654443 2455555677888889999999999999999998874 2345778999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH---HhHHh
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVS 218 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~ 218 (865)
++++.+|..|+.++..+.+..++. ++.+++.+...+.|.++.|+..|+.++..+....|+ .+...
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~------------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPEL------------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGG------------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHChHH------------HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999876643 246777888899999999999999999999876543 22223
Q ss_pred HHHHHHHHHHhhC-----------CCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhc---CCCCHHHHHHHHH
Q 002921 219 MDQYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN---KDTDDDVALEACE 284 (865)
Q Consensus 219 ~~~~l~~l~~~~~-----------~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~v~~~a~~ 284 (865)
++.++..+..... .+++-.+..++++|..+....++.- ..+.+++..++... ++.+..+...|.
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~aV~~ea~- 298 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-EAMNDILAQVATNTETSKNVGNAILYETV- 298 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHHHTSCCSSTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHhccccccchHHHHHHHHH-
Confidence 3334443333221 1244455556666665554332211 11111111111100 111112222222
Q ss_pred HHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 002921 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (865)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (865)
T Consensus 299 -------------------------------------------------------------------------------- 298 (618)
T 1w63_A 299 -------------------------------------------------------------------------------- 298 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC
Q 002921 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (865)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (865)
.++..+.. .........+.+...+.+++ ...|+.|+.+++.++...++.+.++.. .++.++.|
T Consensus 299 --------~~i~~l~~--~~~l~~~a~~~L~~~L~~~d---~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d 361 (618)
T 1w63_A 299 --------LTIMDIKS--ESGLRVLAINILGRFLLNND---KNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKD 361 (618)
T ss_dssp --------HHHHHSCC--CHHHHHHHHHHHHHHHTCSS---TTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGS
T ss_pred --------HHHHhcCC--CHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccC
Confidence 22211100 00111122334444566677 899999999999999876665555544 56678899
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~ 524 (865)
++..||..|+.++..++.. ..+..++..+.+.+.+.+..+|..++.+++.++.........|++.+++
T Consensus 362 ~d~~Ir~~alelL~~l~~~-----------~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~- 429 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNG-----------NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMR- 429 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCS-----------SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH-
T ss_pred CChhHHHHHHHHHHHHccc-----------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH-
Confidence 9999999999988876542 2235667777777877889999999999999998766666666666553
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccc----c
Q 002921 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG----F 600 (865)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~----~ 600 (865)
.+......+...+..++..+....+ ..-...++.+.+.+......++....++.++|..+..+... .
T Consensus 430 ---lL~~~~~~v~~~~~~~l~~ii~~~p------~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~ 500 (618)
T 1w63_A 430 ---VLTTAGSYVRDDAVPNLIQLITNSV------EMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE 500 (618)
T ss_dssp ---HHHHTGGGSCSSHHHHHHHHHHHSC------STHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSS
T ss_pred ---HHHhccchhHHHHHHHHHHHHhcCh------hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccc
Confidence 4443333333344555555555432 22234555666666653223333355778888887765321 0
Q ss_pred cc---chHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCCh
Q 002921 601 TQ---FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDAS 677 (865)
Q Consensus 601 ~~---~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 677 (865)
.| .-..+++.+.+.+... ..+..++..++.++..+....++. . +.+..++..+.++.+.
T Consensus 501 ~~~~~~~~~~~~~l~~~l~~~------------~~~~~vr~~~lta~~Kl~~~~~~~----~--~~l~~~L~~~~~~~d~ 562 (618)
T 1w63_A 501 EPIQVTEDEVLDILESVLISN------------MSTSVTRGYALTAIMKLSTRFTCT----V--NRIKKVVSIYGSSIDV 562 (618)
T ss_dssp CCCCCCHHHHHHHHHHHHHST------------TCCHHHHHHHHHHHHHHHTTCSSC----H--HHHHHHHHHHTTCSCH
T ss_pred cccCCCHHHHHHHHHHHHhcc------------CCCHHHHHHHHHHHHHHHHhCcch----H--HHHHHHHHHhcCCCCH
Confidence 01 1122233332222211 014456666666655555443321 1 2366666677778899
Q ss_pred hHHHHHHHHHHHHHh
Q 002921 678 DVRQSAFALLGDLAR 692 (865)
Q Consensus 678 ~vr~~a~~~l~~l~~ 692 (865)
++|+.|...+.-+..
T Consensus 563 evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 563 ELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999886655443
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.72 E-value=2.6e-15 Score=168.35 Aligned_cols=360 Identities=15% Similarity=0.091 Sum_probs=259.3
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHhcc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIML 210 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~vr~~a~~~l~~~~~~ 210 (865)
-++.+.+.+.++++..|..|+..|..++......... .-.-..++|.+++.+.+++ +.+|..|+.+|..+...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~------~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIE------EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHH------HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHH------HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4788888889999999999999999987654311000 0112467999999999986 99999999999999875
Q ss_pred ccHHhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhc-CCCCHHHHHHHHHHHH
Q 002921 211 MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVN-KDTDDDVALEACEFWH 287 (865)
Q Consensus 211 ~~~~~~~~~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~v~~~a~~~l~ 287 (865)
.+......+. ..++.++.++.+++..+|..++.+|..++...+..-...+. ..++.++..+ .+.+..++..++.++.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4432222221 46788888888889999999999999998754432211111 3566666677 5678899999999999
Q ss_pred HhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccH
Q 002921 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (865)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (865)
.++...... .......+++.++..+...+ +.+
T Consensus 229 ~L~~~~~~~--~~~~~~~~l~~L~~lL~~~~----------------------------------------------~~v 260 (528)
T 4b8j_A 229 NFCRGKPQP--SFEQTRPALPALARLIHSND----------------------------------------------EEV 260 (528)
T ss_dssp HHHCSSSCC--CHHHHTTHHHHHHHHTTCCC----------------------------------------------HHH
T ss_pred HHHcCCCCC--cHHHHHHHHHHHHHHHCCCC----------------------------------------------HHH
Confidence 998762111 12234566777766554311 237
Q ss_pred HHHHHHHHHHHHhhhCcc---h-hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhcc
Q 002921 368 RKCSAAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLL 442 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~~~---~-~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l 442 (865)
+..+..+|..++...+.. + -..+++.+...+.+++ +..+..|+.+|+.++.+........+ ..+++.++..+
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS---PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 888999998887554321 1 2246788888999888 99999999999999986654333222 34788888888
Q ss_pred CCC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--H
Q 002921 443 DDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--E 519 (865)
Q Consensus 443 ~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~ 519 (865)
.++ ++.+|..|+|++++++...... ...-.-..+++.++..+.+.+..+|..|+++|++++.........++ .
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~----~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQ----IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHH----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 888 9999999999999998632211 01111236678888888888999999999999999987443444444 3
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
.+++.|+.++...+..++..++.++..++...+
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 578889999998888888889999998887543
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.70 E-value=1.3e-14 Score=166.24 Aligned_cols=519 Identities=11% Similarity=0.054 Sum_probs=315.0
Q ss_pred HHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC----ChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhccc
Q 002921 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (865)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~ 168 (865)
....|..+|.++++.+|..++.+++.++...... .-+..++.|.+.+.+. ++..|..|+.+|..++.......
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~-- 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-- 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH--
Confidence 3467778888899999999999999999865211 1246788889888765 78999999999988876532110
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002921 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (865)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 247 (865)
. -.-...++.+++.++++++.+|..|+.+|.++....+....... ...++.++..+.+++.+++..++.+|..
T Consensus 93 ~------i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 93 A------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp H------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred H------HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 0 01146789999999999999999999999999865432221111 3467888888888888888888899988
Q ss_pred HHhhchhhhhhhH-HHHHHHHhhhcCCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhh
Q 002921 248 LIEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (865)
Q Consensus 248 l~~~~~~~~~~~l-~~l~~~l~~~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~ 325 (865)
++...++.-.... ...++.++..+.+. .+.++..++.++..++..+..+..+.. ...++.++..+...+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~--~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE--AGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH--TTHHHHHHTTTTCSC-------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH--CCCHHHHHHHHhcCC-------
Confidence 8864333211111 13345555555443 456777888888887754322222111 235566655443211
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCCc
Q 002921 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDE 404 (865)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~ 404 (865)
-.++..+..+|..++...+. .....+++.+.+.+.+++
T Consensus 238 ---------------------------------------~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-- 276 (644)
T 2z6h_A 238 ---------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-- 276 (644)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC--
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC--
Confidence 13688899999999876543 445578888889999888
Q ss_pred chhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCC--ChHHHHHHHHHHHhhHHHHhhhhCCCcch-hhHHHH
Q 002921 405 AWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDK--FPLIRSISCWTLSRFSKFIVQDIGHQNGR-EQFEKV 480 (865)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~~ 480 (865)
+..|+.++.+|+.++.+..+...... ...++.++..+.+. .+.+|..|+++|++++...+... .... -.....
T Consensus 277 -~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~--~~q~~v~~~~~ 353 (644)
T 2z6h_A 277 -INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE--MAQNAVRLHYG 353 (644)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH--HHHHHHHHTTH
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH--HHHHHHHHccC
Confidence 99999999999999876433221111 12677777777653 37999999999999864211000 0000 111346
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhccchhhh-HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCch
Q 002921 481 LMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (865)
Q Consensus 481 ~~~l~~~l~d~~-~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 558 (865)
++.+++.+.+++ ..++..|++++++++...... ... -..+++.|+..+.+.+..++..+..+++.-. .-...
T Consensus 354 l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~--~~~~~--- 427 (644)
T 2z6h_A 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--FVEGV--- 427 (644)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC------------CCSS---
T ss_pred hHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccch--hcccc---
Confidence 788888888764 799999999999987532221 111 1246666777776655444443433333200 00000
Q ss_pred hhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh
Q 002921 559 VYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (865)
Q Consensus 559 ~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (865)
...++ ..++.++..++........-.-...++.+++.|.. .+.+++
T Consensus 428 -------------------~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~--------------~~~~v~ 474 (644)
T 2z6h_A 428 -------------------RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS--------------PIENIQ 474 (644)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTC--------------SCHHHH
T ss_pred -------------------cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcC--------------CCHHHH
Confidence 01111 23444444443211000000001123444444431 134566
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCC
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTP 716 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 716 (865)
..+..++..+... ......+.+...++.|...+++.++++|..|..+++.+....+..+...+ .+..+.+.+.+.
T Consensus 475 ~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~--~~~il~~~~~~~ 549 (644)
T 2z6h_A 475 RVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL--SVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH--HHHHHHHHSCCS
T ss_pred HHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc--chHHHHHHHhCC
Confidence 6666666666532 22233333234677888888999999999999999999877653333322 244455555554
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.70 E-value=4e-14 Score=162.22 Aligned_cols=492 Identities=13% Similarity=0.060 Sum_probs=310.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhH-HhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhchhhh
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
...+|.+...|+++++.+|..|+.+|..+....+.... ...+..++.++..+.+ .+.+++..++.+|..++.......
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 45688999999999999999999999999876432211 1123556777776654 478899999999988775422111
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhhhhhhcccCCCCCc
Q 002921 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (865)
Q Consensus 257 ~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~ 335 (865)
.-.-...++.++..+++.+++++..|+.++..++... ......+. ...++.++..+...+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~~v~~~g~i~~Lv~lL~~~~----------------- 153 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--EGAKMAVRLAGGLQKMVALLNKTN----------------- 153 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--TTHHHHHHHTTHHHHHHHGGGCCC-----------------
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc--chhHHHHHHCCChHHHHHHHCcCC-----------------
Confidence 1111246777888888889999999999999987652 11111222 456777766655321
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---ch-hhhhHHHHHHhhccCCCcchhHHHH
Q 002921 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREA 411 (865)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~~~~~l~~~l~~~~~~~~~~r~~ 411 (865)
+.++..+..+|..++...++ .+ -...++.+.+.+.+.+. ...++.
T Consensus 154 -----------------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~~~ 202 (644)
T 2z6h_A 154 -----------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--EKLLWT 202 (644)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC--HHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh--HHHHHH
Confidence 13577777888888753321 11 12346666667766542 567788
Q ss_pred HHHHHHHHHhchhhhhhccHH--HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc
Q 002921 412 AVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (865)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 489 (865)
++.+|..++.... ....+- ..++.++..+.++++.++..++++|.+++..... ......+++.+++.+.
T Consensus 203 a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-------~~~~~~~i~~Lv~lL~ 273 (644)
T 2z6h_A 203 TSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-------QEGMEGLLGTLVQLLG 273 (644)
T ss_dssp HHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-------CCSCHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-------hhhhhhHHHHHHHHHc
Confidence 8999988875322 122221 3788899999999999999999999999865321 1234578999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccchhhh-HHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHhccc-CCch-hhHhhh
Q 002921 490 DTNKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFE-LNQP-VYLDIL 564 (865)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~-~~~~-~~~~~l 564 (865)
+.++.+|..|+++|.+++.......... -...++.|+..+.+.. ..++..++.+++.++...+.. .... -.-...
T Consensus 274 ~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~ 353 (644)
T 2z6h_A 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 353 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccC
Confidence 9999999999999999986432111111 1236777777777643 467778888888886422211 0000 011245
Q ss_pred hHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHH-hhcc-----c--ccCCCCCc
Q 002921 565 MPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQF-AQPVFQRCINIIQTQQLA-KVDS-----V--AAGAQYDK 634 (865)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~-~~~~-----~--~~~~~~~~ 634 (865)
+|.+.+.+... .+..+ ..++.++++++..-... ... -..+++.+++.+...... +... + -.....+.
T Consensus 354 l~~L~~lL~~~--~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~ 430 (644)
T 2z6h_A 354 LPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430 (644)
T ss_dssp HHHHHHTTSTT--CCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHH
T ss_pred hHHHHHHhCcc--CchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHH
Confidence 67777777543 22233 56677777776422111 111 123567777777654221 1000 0 00000123
Q ss_pred chhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHH--HHHHHHHh
Q 002921 635 EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSD--FLDIAAKQ 712 (865)
Q Consensus 635 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~l~~l~~~ 712 (865)
+++..+..++..++..- .....+.....+|.+...+.+.+.+++..|..+++.++.. ......+.+ .++.+.+.
T Consensus 431 ~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 431 EIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHH
Confidence 55666667776666432 1222222225788888899999999999999999998753 222333322 46677777
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 002921 713 LNTPKLKETVSVANNACWAIGELAVKAR 740 (865)
Q Consensus 713 l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 740 (865)
+.+. +.++|.+|+++|+.+....+
T Consensus 507 l~~~----~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSR----NEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCS----CHHHHHHHHHHHHHHTTTSC
T ss_pred HcCC----CHHHHHHHHHHHHHHhccCc
Confidence 7777 78999999999999987654
No 39
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.70 E-value=3.4e-13 Score=159.02 Aligned_cols=378 Identities=8% Similarity=0.066 Sum_probs=241.8
Q ss_pred HHHHHHHHhccCC--CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-----DTNKRVQEAACSAFA 504 (865)
Q Consensus 432 ~~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----d~~~~vr~~a~~al~ 504 (865)
+.+++.+...+.+ +++..|.+++|++|.+++.+.+. ...+++.++++.++..+. |+...||..+|++++
T Consensus 450 ~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~----~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 450 EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED----TEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHH----HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCch----hHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 3345555444543 67999999999999998765431 245788899999888776 345678888999999
Q ss_pred HHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc------hhhHhhhhHHHHHHHhcCCCC
Q 002921 505 TLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ------PVYLDILMPPLIAKWQQLPNS 578 (865)
Q Consensus 505 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~l~~~l~~~l~~~~~~ 578 (865)
.+++..... ..|++.+++.++..+.+.+.++..+++.++..+++.++..+.. .||++.++..+.+..... +
T Consensus 526 ry~~wl~~~-~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l--~ 602 (1023)
T 4hat_C 526 QYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL--Q 602 (1023)
T ss_dssp TCHHHHHHC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS--C
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC--C
Confidence 998876433 4578999999999987766778889999999999988765421 268888888777777643 2
Q ss_pred CcchhhHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHH-hhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh
Q 002921 579 DKDLFPLLECFTSIAQALGAG--FTQFAQPVFQRCINIIQTQQLA-KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI 655 (865)
Q Consensus 579 ~~~~~~~~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 655 (865)
......+.++++.++.+.+.. -..++..+++.+...++.-... ..+++.-..++........+++.+.++..+|..|
T Consensus 603 ~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f 682 (1023)
T 4hat_C 603 PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF 682 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 333467889999999988753 3345666666665555443211 1111100000011223457778888999999999
Q ss_pred hhhcccchHHHHHHHHhcC-----------------CCh------hHHHHHHHHHHHHHhhchh--h-hHhhHHHHHHHH
Q 002921 656 ESLVAQSNLRDMLLQCCMD-----------------DAS------DVRQSAFALLGDLARVCPV--H-LQARLSDFLDIA 709 (865)
Q Consensus 656 ~~~~~~~~l~~~l~~~l~~-----------------~~~------~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~l~~l 709 (865)
.+++.. +++.+....+. ..+ .+|...+.++...+....+ . ...+++.++..+
T Consensus 683 ~~~~~~--i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~v 760 (1023)
T 4hat_C 683 YPQLGH--IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAV 760 (1023)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHH
Confidence 888876 66655543221 111 2344555666666654421 1 123344444444
Q ss_pred HHhcCCCCCCCchhHHHH-HHHHHHHHHHhccccccchHHHHHHHH----HHHhcCchhhhhhHHHHHHHHHHhhhhhCC
Q 002921 710 AKQLNTPKLKETVSVANN-ACWAIGELAVKARQEISPIVMTVVLCL----VPILKHSEELNKSLIENSAITLGRLAWVCP 784 (865)
Q Consensus 710 ~~~l~~~~~~~~~~~~~~-a~~~l~~l~~~~~~~~~~~~~~il~~l----~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (865)
+..-... ....|+. ...+...++...+..+.+.+..+++.+ ++++++...-.++.|.+....+.++...++
T Consensus 761 l~dY~~~----~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f 836 (1023)
T 4hat_C 761 LEDYMNN----VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1023)
T ss_dssp HHHHHHS----CGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhC----ChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHCh
Confidence 4332222 2334433 345666677777777777776666654 466665433368899999999999998887
Q ss_pred Ccccc----cHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 002921 785 ELVSP----HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVK 823 (865)
Q Consensus 785 ~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 823 (865)
..+.. .+..+++..+-++.+ ...+....+++.+..++.
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~a~~h-~~r~~~~~~l~~~~~ll~ 878 (1023)
T 4hat_C 837 AAFLELPPAAFKLFVDAICWAFKH-NNRDVEVNGLQIALDLVK 878 (1023)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHH
Confidence 75433 344455555444444 345667777888877776
No 40
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.69 E-value=2.3e-12 Score=151.99 Aligned_cols=709 Identities=11% Similarity=0.055 Sum_probs=396.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCC---ChhHHHHHHHHHHHHHHhcCcC----ChHHHH
Q 002921 61 EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGIA----GWLELL 133 (865)
Q Consensus 61 ~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~~----~w~~ll 133 (865)
++.+++.|+.|-..|.+ +++. ++ --......|.++ +..+|.-+++++....+..+++ ....+-
T Consensus 18 p~sd~~~r~~A~~~L~~-~q~s-----p~----aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGS-LRSS-----ST----GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp TTSCHHHHHHHHHHHHH-HHHS-----TT----HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHcC-----hh----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 35688999999888854 3331 11 113445556543 6899999999999998854566 566666
Q ss_pred HHHHHhhcc-----CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHH
Q 002921 134 QALVTCLDS-----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQF 207 (865)
Q Consensus 134 ~~l~~~l~~-----~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~~ 207 (865)
..++..+.. ..+.+|.....++..++....+ ..++.+++.+++.++.++. ......++++..+
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-----------~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-----------SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-----------TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-----------ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 666666543 2346777777788777765322 1246778888777765433 2334445555533
Q ss_pred hccc-----c--H-----------HhHHh-HHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 002921 208 IMLM-----P--S-----------ALFVS-MDQYLQGLFLLS----NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (865)
Q Consensus 208 ~~~~-----~--~-----------~~~~~-~~~~l~~l~~~~----~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (865)
.+.. + + .+... ++.+.+.++..+ ...++.++..+++|+..++...+-..... ..++
T Consensus 157 ~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll 235 (980)
T 3ibv_A 157 GDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCM 235 (980)
T ss_dssp HHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHH
T ss_pred HHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHH
Confidence 2211 0 0 01111 222333333332 23567788899999998887543221111 4677
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccc
Q 002921 265 EYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFH 344 (865)
Q Consensus 265 ~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 344 (865)
+.+.+.+.+ ++++..|++++..++..........+.+..+ .+...+....
T Consensus 236 ~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l--~L~~~~~~l~-------------------------- 285 (980)
T 3ibv_A 236 NLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL--NLNLFFSKSQ-------------------------- 285 (980)
T ss_dssp HHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH--HHHHHHCC----------------------------
T ss_pred HHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH--hHHHHHHHHh--------------------------
Confidence 777666664 7899999999999987633222211122111 0001111000
Q ss_pred cccCCCCCCCCCCCccccccccHHHHHHHHHHHHH------hhhCc-----------chhhhhHHHHHHhhccCCCcchh
Q 002921 345 SSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS------NVFGD-----------EILPTLMPVIQAKLSASGDEAWK 407 (865)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~------~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~ 407 (865)
.. ++|.| .++.-.+++..++ ...++ ..+..+++.+..++.+++ +.
T Consensus 286 -------~~--~~D~d------~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~---de 347 (980)
T 3ibv_A 286 -------EQ--STDPN------FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY---DE 347 (980)
T ss_dssp ------------CCHH------HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS---HH
T ss_pred -------cc--cccHH------HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc---hh
Confidence 00 01111 2222222222211 11120 334567777777777777 66
Q ss_pred HHHHHHHHHHHHHhch---------hhhhhccHHHHHHHHHhccCCCC----------------hHHHHHHHHHHHhhHH
Q 002921 408 DREAAVLALGAIAEGC---------IKGLYPHLSEIVAFLIPLLDDKF----------------PLIRSISCWTLSRFSK 462 (865)
Q Consensus 408 ~r~~a~~~l~~l~~~~---------~~~~~~~l~~i~~~l~~~l~d~~----------------~~vr~~a~~~l~~l~~ 462 (865)
+-..++-.+..+.+.. .+...+++..+++.++..+..|. ...|.... .+-..+.
T Consensus 348 Vs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~ 426 (980)
T 3ibv_A 348 TSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTIN 426 (980)
T ss_dssp HHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHH
Confidence 6666665565555432 23345788888888888775321 12444443 3322222
Q ss_pred HHhhhhCCCcchhhHH----HHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhcc------chhhhHHHHHHHHHHHh
Q 002921 463 FIVQDIGHQNGREQFE----KVLMGLLKRIL---DTNKRVQEAACSAFATLEEEAAE------ELAPRLEIILQHLMMAF 529 (865)
Q Consensus 463 ~~~~~~~~~~~~~~~~----~~~~~l~~~l~---d~~~~vr~~a~~al~~l~~~~~~------~~~~~~~~i~~~l~~~l 529 (865)
.+. ...++. .+.+.+-..+. +.+.+.++.+..+++.+.+.+.. ...++++.+++.+..++
T Consensus 427 ~l~-------~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 427 SID-------SSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHC-------HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred hcC-------hHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 222 122233 33333333442 23578899999999999887643 12245666777676666
Q ss_pred c-----ccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHH--HHhcCCCCCcch-hhHHHHHHHHHHHhccccc
Q 002921 530 G-----KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA--KWQQLPNSDKDL-FPLLECFTSIAQALGAGFT 601 (865)
Q Consensus 530 ~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~--~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~ 601 (865)
+ ..+..++...+++++....-...+ |.|++.+++.++. .+.+ .++.+ .++...+..+++..+..+.
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~---~~~l~~~L~~ll~~~gl~~---~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYE---SAAIPALIEYFVGPRGIHN---TNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTC---CTTHHHHHHHHTSTTTTTC---CCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcC---chhHHHHHHHHhccccccC---CChhHHHHHHHHHHHHHHHhhHHhh
Confidence 5 334456778888888877766543 3677777777665 4432 22233 6788899999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcccc-------cCCCCCcchhHhhhhhhhHHHHHhhh---hhhhhcccchHHHH----
Q 002921 602 QFAQPVFQRCINIIQTQQLAKVDSVA-------AGAQYDKEFVVCCLDLLSGLAEGLGS---GIESLVAQSNLRDM---- 667 (865)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~al~~l~~l~~~~~~---~~~~~~~~~~l~~~---- 667 (865)
||++.++..+-..|........+.|. ...+...+=....++++|.++...+. .-..++.. +++.
T Consensus 574 ~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~--ll~pl~~~ 651 (980)
T 3ibv_A 574 NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS--LINALIGK 651 (980)
T ss_dssp SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHHHHHH
Confidence 99999887665444311000000000 00000001122467788888877552 22334443 3333
Q ss_pred HHHHhcCC----ChhH-HHHHHHHHHHHHhhchhh------hHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 002921 668 LLQCCMDD----ASDV-RQSAFALLGDLARVCPVH------LQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (865)
Q Consensus 668 l~~~l~~~----~~~v-r~~a~~~l~~l~~~~~~~------~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~ 736 (865)
+..+++.. +... ....+.++|.+++.+... +...+.++++.+...+..-.. +..+|++++.++.+++
T Consensus 652 l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~--~~~irea~~~~~~r~i 729 (980)
T 3ibv_A 652 ANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGF--NEDIRGAVRFTSGRII 729 (980)
T ss_dssp HHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCC--SHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 33344321 1111 124466678888876421 344555666666555542111 5789999999999999
Q ss_pred HhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHH----HhccCC------
Q 002921 737 VKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI----ALSMIR------ 806 (865)
Q Consensus 737 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~----~l~~~~------ 806 (865)
...+.++.|+++.+++.++..+... -....+..++.++......+.+.+..++..++. .+....
T Consensus 730 ~~lg~~~~p~lp~~i~~ll~~~~~~------e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~ 803 (980)
T 3ibv_A 730 NVVGPDMLPKVPQLISILLNSIDMN------ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDA 803 (980)
T ss_dssp TTTHHHHTTTHHHHHHHHHHHCCTT------THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHH
T ss_pred HHccHhHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999999999999988544322 233456788888887776677766665555554 444311
Q ss_pred -ChH-HHHHHHHHHHHHHhhCchhhH------hhHHHHHHHhhccCCC----ccHHHHHHHHHhcCccc
Q 002921 807 -DDT-EKEDAFRGLCAMVKANPSGAL------SSLVFMCRAIASWHVR----ITLHLILLSVIFFGSFW 863 (865)
Q Consensus 807 -~~~-~~~~~~~~l~~l~~~~~~~~~------~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 863 (865)
+.. -++.-+..+.+++.++-.++. ++|..++..+.+|... +..|.-|+.+.-+-..|
T Consensus 804 r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 804 VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 112 344555666667776533332 4577777777766442 23666555555554445
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.68 E-value=3.5e-14 Score=165.05 Aligned_cols=453 Identities=14% Similarity=0.070 Sum_probs=299.1
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHH
Q 002921 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (865)
Q Consensus 26 s~~~~~~r~~a~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~ 95 (865)
+++.. +|..|-..|..+.. .++.+..|+..+.+ +.++.+|..|+..|++.... -.....-......
T Consensus 161 ~~d~~-vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I 236 (780)
T 2z6g_A 161 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHH-REGLLAIFKSGGI 236 (780)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHH
T ss_pred CCCHH-HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCH
Confidence 56777 99999999998764 34678888888874 45899999999999884322 1100011112445
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC--Ch--HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
+.|+.+|.++++.+|..++.++..++...... .. ...++.|.+.+.++++.++..++.+|..++....+....
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~--- 313 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI--- 313 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH---
Confidence 67888888899999999999999999874211 11 347889999999988889999988998777543221100
Q ss_pred CCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002921 172 GLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 248 (865)
-.-...++.+++.+.+.+. ..+..++.++..+... +. ....+ ...++.+..++.+.+..++..++.+|..+
T Consensus 314 ----i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 314 ----ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp ----HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0013457788888887654 4556778888877643 21 11111 23577888888888888999999999999
Q ss_pred HhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhhhhhhc
Q 002921 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAE 327 (865)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~~~~~~ 327 (865)
+...+.. .....+++.++..+.+.+.+++..|+.++..++... ........ ...++.++..+....+
T Consensus 388 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~-------- 455 (780)
T 2z6g_A 388 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD-------- 455 (780)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHTT--------
T ss_pred hccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHccCC--------
Confidence 8766542 224567888888888899999999999999987752 11111111 2345555544432100
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcc------h-hhhhHHHHHHhhcc
Q 002921 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE------I-LPTLMPVIQAKLSA 400 (865)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~------~-~~~~~~~l~~~l~~ 400 (865)
. -.+|..|..+|+.|+...++. + ....++.+.+.+.+
T Consensus 456 ------------------------------~------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 456 ------------------------------R------EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp ------------------------------C------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred ------------------------------H------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 0 037888999998886544331 1 12457778888877
Q ss_pred CCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChH----------------------HHHHHHHHH
Q 002921 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPL----------------------IRSISCWTL 457 (865)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~----------------------vr~~a~~~l 457 (865)
++. |..|.+++.+|+.++.+.... .... ..+++.++..+.+.++. ++..++.+|
T Consensus 500 ~~~--~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL 576 (780)
T 2z6g_A 500 PSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576 (780)
T ss_dssp TCC--HHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHH
T ss_pred CCh--HHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHH
Confidence 653 799999999999998644322 1111 12556666666554433 455555555
Q ss_pred HhhHHHHhhhhCCCcchhh--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH--HHHHHHHHhcccc
Q 002921 458 SRFSKFIVQDIGHQNGREQ--FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI--ILQHLMMAFGKYQ 533 (865)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~ 533 (865)
+.++..-. .... -...++.|++.+.++++.|+..|+.+|.+++.. ......+.. .++.|..++.+.+
T Consensus 577 ~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~ 647 (780)
T 2z6g_A 577 HILARDIH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRN 647 (780)
T ss_dssp HHHTTSHH-------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHhcChh-------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCC
Confidence 55542110 0111 134578889999999999999999999988632 122222332 5677788888888
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 002921 534 RRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 534 ~~~~~~~~~~l~~l~~~~ 551 (865)
..++..+..++..++..-
T Consensus 648 ~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 648 EGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 888889999998887643
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=1.7e-13 Score=154.97 Aligned_cols=441 Identities=12% Similarity=0.094 Sum_probs=272.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCcHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHH
Q 002921 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (865)
Q Consensus 19 ~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~ 96 (865)
+++....+++-+ .|+-+.-++..+.+ +|+........+..+ .+.++.+|..|...|.+.- .++..+.+..
T Consensus 74 ~vik~~~s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~ 145 (618)
T 1w63_A 74 ECLKLIASQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAG 145 (618)
T ss_dssp HHHHHHHSSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HHHHHHcCCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHH
Confidence 344444577777 89999998888754 676533333333221 3678899999988875542 3455567778
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCc
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (865)
.+..+|.++++.||++++.++..+++..+ +..+.+++.+...+.+.++.++.+|+.+|..+++.-++.. .
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~---------~ 215 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML---------A 215 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH---------H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH---------H
Confidence 88889999999999999999999999763 4456788888899999999999999999999886543211 0
Q ss_pred chhhhHHHHHHHhcC---------------CCHHHHHHHHHHHHHHhccccHH---hHHhH-------------------
Q 002921 177 PINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSA---LFVSM------------------- 219 (865)
Q Consensus 177 ~~~~l~~~l~~~l~~---------------~~~~vr~~a~~~l~~~~~~~~~~---~~~~~------------------- 219 (865)
.+..++|.+++.|.+ +++-.+...+++++.+....|.. +.+.+
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 123344444443331 36666666777776665432210 00000
Q ss_pred ----------------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHH
Q 002921 220 ----------------DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (865)
Q Consensus 220 ----------------~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~ 283 (865)
...++.+..++.++++++|..++.+|..++...|..+.++...++. ++.+.+..+|..++
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~d~~Ir~~al 371 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSSCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH----HccCCChhHHHHHH
Confidence 1123445555666778888888888888888888777777666554 55788899999999
Q ss_pred HHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccc
Q 002921 284 EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (865)
Q Consensus 284 ~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~ 363 (865)
+.+..++.... +. .+++.++.++...+
T Consensus 372 elL~~l~~~~n----v~----~iv~eL~~~l~~~d--------------------------------------------- 398 (618)
T 1w63_A 372 ELSFALVNGNN----IR----GMMKELLYFLDSCE--------------------------------------------- 398 (618)
T ss_dssp HHHHHHCCSSS----TH----HHHHHHHHHHHHCC---------------------------------------------
T ss_pred HHHHHHccccc----HH----HHHHHHHHHHHhCC---------------------------------------------
Confidence 99999887532 22 22333333322110
Q ss_pred cccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC
Q 002921 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (865)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (865)
..+|..+...++.++..++... ...++.+.+.+.+.. -..+..++..+..+....++. ...+++.++..+.
T Consensus 399 -~e~r~~~v~~I~~la~k~~~~~-~~~v~~ll~lL~~~~---~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~ 469 (618)
T 1w63_A 399 -PEFKADCASGIFLAAEKYAPSK-RWHIDTIMRVLTTAG---SYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAIL 469 (618)
T ss_dssp -HHHHHHHHHHHHHHHHSSCCCH-HHHHHHHHHHHHHTG---GGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHh
Confidence 0278999999999999886432 334555556665544 344555566666666544432 1224444444443
Q ss_pred C--CChHHHHHHHHHHHhhHHHHhhh-hC---C-CcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhh
Q 002921 444 D--KFPLIRSISCWTLSRFSKFIVQD-IG---H-QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (865)
Q Consensus 444 d--~~~~vr~~a~~~l~~l~~~~~~~-~~---~-~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (865)
+ .+..+...++|++|+++..+... .. + .........++..+++.. ..++.||..+..++..+....++. .+
T Consensus 470 ~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~~ 547 (618)
T 1w63_A 470 GDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-VN 547 (618)
T ss_dssp HCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-HH
T ss_pred cccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-HH
Confidence 2 23344457899999999887420 00 0 001122223333333222 457899999999998887654322 33
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Q 002921 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (865)
Q Consensus 517 ~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~ 548 (865)
.+..++. ....+.+.+++.-+...+..+.
T Consensus 548 ~l~~~L~---~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 548 RIKKVVS---IYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHH---HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhcCCCCHHHHHHHHHHHHHHc
Confidence 3333332 3344555566766666665543
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.65 E-value=1.4e-13 Score=154.84 Aligned_cols=494 Identities=12% Similarity=0.055 Sum_probs=300.3
Q ss_pred HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC----ChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcc
Q 002921 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
...+.|...|.++++.+|..++.++..++...... .-+..++.+.+.+.+. ++..+..++.+|..+...-...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~-- 94 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-- 94 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH--
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH--
Confidence 34567778888999999999999999999764211 1246788888888654 8899999999999987642211
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 246 (865)
.. -.-...+|.+.+.++++++.++..|+.+|.++....+...... -...++.+...+.+++.+++..+..+|.
T Consensus 95 ~~------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 95 LA------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HH------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 0113678999999999999999999999999986533221111 1346788888888888899999999998
Q ss_pred HHHhhchhhhhhhHH-HHHHHHhhhcCC-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhh
Q 002921 247 LLIEVRPSFLEPHLR-NLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (865)
Q Consensus 247 ~l~~~~~~~~~~~l~-~l~~~l~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~ 324 (865)
.++...++.-..... ..++.++..+.+ ..+..+..+..++..++..+.....+. -...++.++..+...+
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~~~~L~~ll~~~~------ 240 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPS------ 240 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH--HTTHHHHHHTTTTSSC------
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH--HCCCHHHHHHHHhCCC------
Confidence 887643322111111 233444444433 345556667777777765432222111 1245566655443211
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-chhhhhHHHHHHhhccCCC
Q 002921 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (865)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~~~ 403 (865)
..++..+..++..++...+. ......+|.+.+.+.+++
T Consensus 241 ----------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~- 279 (529)
T 1jdh_A 241 ----------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD- 279 (529)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-
T ss_pred ----------------------------------------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC-
Confidence 12677889999998877643 344567888888898888
Q ss_pred cchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCC--CChHHHHHHHHHHHhhHHHHhhhhCCCcchh-hHHH
Q 002921 404 EAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QFEK 479 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~ 479 (865)
+..|..++.+|+.++.+..+....... ..++.++..+.+ .++.++..|++++++++...+.. ...... .-..
T Consensus 280 --~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~i~~~~ 355 (529)
T 1jdh_A 280 --INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--EMAQNAVRLHY 355 (529)
T ss_dssp --HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH--HHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHcC
Confidence 999999999999998754322221111 256677777754 34799999999999886531100 000001 1124
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc
Q 002921 480 VLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (865)
Q Consensus 480 ~~~~l~~~l~d~~-~~vr~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 557 (865)
.++.+++.+.+++ +.++..+++++++++...... .... ..+++.|+..+.+.+..++..+..+++......|.
T Consensus 356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~---- 430 (529)
T 1jdh_A 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV---- 430 (529)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB----
T ss_pred ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc----
Confidence 5788888888875 699999999999987532211 1111 13556666666554444444444444321000000
Q ss_pred hhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcch
Q 002921 558 PVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEF 636 (865)
Q Consensus 558 ~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 636 (865)
...++ ..++.++..++. +.+.
T Consensus 431 --------------------~~~~i~~~~~~al~~L~~--------------------------------------~~~~ 452 (529)
T 1jdh_A 431 --------------------RMEEIVEGCTGALHILAR--------------------------------------DVHN 452 (529)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTT--------------------------------------SHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHhc--------------------------------------CchH
Confidence 00000 011111111110 0000
Q ss_pred hHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHhcC
Q 002921 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLN 714 (865)
Q Consensus 637 ~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~ 714 (865)
+ ..+.. ...++.+...+.+.+.+++..|..+++.+... ......+. ..++.+.+.+.
T Consensus 453 ~------------------~~l~~-~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 453 R------------------IVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp H------------------HHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG
T ss_pred H------------------HHHhc-cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhc
Confidence 0 00001 13667777888889999999999999988743 22222222 25667777777
Q ss_pred CCCCCCchhHHHHHHHHHHHH
Q 002921 715 TPKLKETVSVANNACWAIGEL 735 (865)
Q Consensus 715 ~~~~~~~~~~~~~a~~~l~~l 735 (865)
++ +.+++..|.+++..+
T Consensus 512 ~~----~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 512 SR----NEGVATYAAAVLFRM 528 (529)
T ss_dssp CS----SHHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHhc
Confidence 77 789999999999875
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.65 E-value=1.1e-13 Score=155.57 Aligned_cols=451 Identities=13% Similarity=0.053 Sum_probs=291.7
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH---
Q 002921 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ--- 92 (865)
Q Consensus 26 s~~~~~~r~~a~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~--- 92 (865)
+++.. +|..|-..|.++.. .++.+..+...+.+ +.++.+|..|+..|++.... ++.+.
T Consensus 28 ~~~~~-v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~L~~ls~~------~~~~~~i~ 98 (529)
T 1jdh_A 28 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH------REGLLAIF 98 (529)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTS------HHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHcC------chhHHHHH
Confidence 56777 99999999988754 23567778888864 45889999999999874322 22332
Q ss_pred --HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC--C--hHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhc
Q 002921 93 --YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (865)
Q Consensus 93 --~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~--w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (865)
...+.|+..|.++++.++..++.++..++...... . -...++.|.+.+.++++..+..+..+|..++....+..
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34457788888899999999999999999874221 1 14578999999999999999999889988876432211
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHhccccHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHH
Q 002921 167 DSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCA 243 (865)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~ 243 (865)
.. -.-...++.+++.+.+.+ ...+..++.++..+... +. ....+ ...++.+...+.+++..++..++.
T Consensus 179 ~~-------i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 179 LI-------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HH-------HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred HH-------HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 00 001245777788887654 45666778888888753 21 11111 246788888888888999999999
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh-hhHHHHHHhhccCChhhhh
Q 002921 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDES 322 (865)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~d~~ 322 (865)
+|..++...+.. .....+++.+++.+.+.+++++..++.++..++... ........ ...++.++..+....
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~---- 321 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAG---- 321 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHT----
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccC----
Confidence 999998765443 234577888888888899999999999999987651 11111111 123455544443210
Q ss_pred hhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc------chh-hhhHHHHH
Q 002921 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EIL-PTLMPVIQ 395 (865)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~~~~~l~ 395 (865)
..+.+|..|..+|..++...++ .+. ...++.+.
T Consensus 322 ----------------------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 322 ----------------------------------------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 0123788899999988765432 111 23577788
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChHHHHHHHHHHHh--hH-----------
Q 002921 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSR--FS----------- 461 (865)
Q Consensus 396 ~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~--l~----------- 461 (865)
+.+.++++ |..|..++++++.++.+.... .... ..+++.++..+.++++.+|..|+|++++ +.
T Consensus 362 ~lL~~~~~--~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 362 KLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HTTSTTCC--HHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHhccccc--hHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 88887642 799999999999998754322 2222 2378888888888888999988888875 11
Q ss_pred --HHHhhhhCCCcchh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccchh
Q 002921 462 --KFIVQDIGHQNGRE--QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRR 535 (865)
Q Consensus 462 --~~~~~~~~~~~~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~ 535 (865)
..+........... .-...++.++..+.++++.|+..|+.++.++... ......+ ...++.|..++.+.+..
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~~~~~ 516 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEG 516 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcCCCHH
Confidence 00110000000000 0123467888889999999999999999987632 1111111 13456677777777777
Q ss_pred hHHHHHHHHHHH
Q 002921 536 NLRIVYDAIGTL 547 (865)
Q Consensus 536 ~~~~~~~~l~~l 547 (865)
++..+..++..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777777654
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.63 E-value=4.3e-12 Score=142.73 Aligned_cols=553 Identities=10% Similarity=0.039 Sum_probs=320.7
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHH
Q 002921 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (865)
Q Consensus 12 ~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~ 91 (865)
.++..+..-+....+... .++...+.+.++++. +.+++..+...|.-+..-+-...... ..++.
T Consensus 11 ~~l~~~I~~ir~~~~~~~--e~~~i~~E~~~ir~~----------~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~s~--- 74 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEA--EIKRINKELANIRSK----------FKGDKALDGYSKKKYVCKLLFIFLLG-HDIDF--- 74 (621)
T ss_dssp HHHHHHHHHHHHCSSHHH--HHHHHHHHHHHHHHH----------HHSSSCCCHHHHHHHHHHHHHHHHHS-CCCCS---
T ss_pred hhHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHH----------HhcCCCCCHHHHHHHHHHHHHHHHcC-CCCch---
Confidence 456666666665543322 566677777766541 11111334555544432221111111 12222
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCC
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (865)
..-.+++.+.+++...|+.+-..+..++... ++..--.+..+.+-++++++.+|-.|+++++.+.. ++
T Consensus 75 --~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e------- 142 (621)
T 2vgl_A 75 --GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE------- 142 (621)
T ss_dssp --CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH-------
T ss_pred --hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH-------
Confidence 2345567788889999987666666655432 11222246778888889999999999999988854 11
Q ss_pred CCCCcchhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002921 172 GLAECPINIFLPRLLQFF--QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (865)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l--~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 249 (865)
..+.+.|.+.+++ .|.++.||+.|+-|+..+....|+.+.. +.+++.+..++.|+++.++..++.++..++
T Consensus 143 -----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 143 -----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp -----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 3478889999999 8999999999999999998865543321 245677777888899999999999999999
Q ss_pred hhchhhhhhhHHHHHHHHhhhcCCC-------------CHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccC
Q 002921 250 EVRPSFLEPHLRNLFEYMLQVNKDT-------------DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (865)
Q Consensus 250 ~~~~~~~~~~l~~l~~~l~~~~~~~-------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~ 316 (865)
...++.+.++++.++..+.+.+... ++-.+...++++..++..+ . ......+..++..+++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d-~~~~~~l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-D-PAVRGRLTECLETILNKAQE 293 (621)
T ss_dssp HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-S-HHHHHHHHHHHHHHHHHHHS
T ss_pred HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-C-HHHHHHHHHHHHHHHHhhcc
Confidence 9888777677777666555443211 4556777788777765431 1 12222222233333222111
Q ss_pred Chh--hhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc-chhhhhHHH
Q 002921 317 ADD--DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPV 393 (865)
Q Consensus 317 ~~~--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~~~ 393 (865)
+.. ... . ......+...+..++ ....+. .......+.
T Consensus 294 ~~ks~~l~----------------------~---------------~n~~~aVl~ea~~~i---~~l~~~~~~~~~~~~~ 333 (621)
T 2vgl_A 294 PPKSKKVQ----------------------H---------------SNAKNAVLFEAISLI---IHHDSEPNLLVRACNQ 333 (621)
T ss_dssp CCSCSSHH----------------------H---------------HHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHH
T ss_pred Cccccccc----------------------c---------------cchHHHHHHHHHHHH---HhcCCcHHHHHHHHHH
Confidence 000 000 0 000001223333333 332232 455566777
Q ss_pred HHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002921 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (865)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (865)
+...+.+++ ...|+.|+.++..++...+. ...+....+.++.++. |+++.||..++.++..++.
T Consensus 334 L~~~L~~~~---~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---------- 398 (621)
T 2vgl_A 334 LGQFLQHRE---TNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD---------- 398 (621)
T ss_dssp HHHHSSCSC---HHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHhcCCC---cchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----------
Confidence 777887787 99999999999999876531 1122333455667788 9999999999988776653
Q ss_pred chhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 473 ~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
......++..+...+.+.+...|..+..+++.++.........|++.+++ .+......+...+...+..++...
T Consensus 399 -~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~----ll~~~~~~v~~ev~~~l~~ii~~~- 472 (621)
T 2vgl_A 399 -RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILN----LIRIAGDYVSEEVWYRVIQIVINR- 472 (621)
T ss_dssp -HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHH----HHHHHGGGSCSHHHHHHHHHHGGG-
T ss_pred -hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH----HHHhhcccchHHHHHHHHHHHhCC-
Confidence 34567888888888888889999999999999988766666666665554 333333333333344444444332
Q ss_pred ccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHhhcccccCC
Q 002921 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLAKVDSVAAGA 630 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~ 630 (865)
+.+. +| .+..+.+.+........-+..+.-++|..+..+... ++. ..++..+.+.+.
T Consensus 473 ~~~~--~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~--~~~~p~~~l~~l~~~~~-------------- 531 (621)
T 2vgl_A 473 DDVQ--GY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD--PRSSPLIQFNLLHSKFH-------------- 531 (621)
T ss_dssp CSCH--HH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS--TTSCHHHHHHHHHHHHT--------------
T ss_pred hhHH--HH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc--CCCCHHHHHHHHHHHhc--------------
Confidence 2222 23 344555666543211100122235555554443321 111 123333322211
Q ss_pred CCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhc--CCChhHHHHHHHHHHH
Q 002921 631 QYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGD 689 (865)
Q Consensus 631 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~~l~~ 689 (865)
+.+..++..++.++..+....++ . . +.+..++..+.. +.+.++|+.|...+.-
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p~-~---~--~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFPE-V---K--ATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGG-G---H--HHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHChH-H---H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 01345565555555555443322 1 1 124444444555 8899999999875443
No 46
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.63 E-value=1.3e-10 Score=136.23 Aligned_cols=365 Identities=8% Similarity=0.047 Sum_probs=229.5
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHhccchhhhHH
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-----NKRVQEAACSAFATLEEEAAEELAPRLE 519 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-----~~~vr~~a~~al~~l~~~~~~~~~~~~~ 519 (865)
.++..+.++||++|.++..+.+. ....++.++++.++.....+ ...++...|+.++.+.+-...+ ..|++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~----~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~ 565 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEE----DEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLK 565 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHH----HHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcc----cccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHH
Confidence 56889999999999997654321 23467888999888776543 2456777788999888776544 45889
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc------hhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 002921 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ------PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIA 593 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~ 593 (865)
.++..++..+.+.+..++.+++.++..++..++.++.. .||+++++..+.+...... ...+..+.++++.++
T Consensus 566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~--~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ--PQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999887632 2578877776666655432 233467888999999
Q ss_pred HHhcccc--ccchHHHHHHHHHHHHHHHHH-hhcccccCCCCC-cchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHH
Q 002921 594 QALGAGF--TQFAQPVFQRCINIIQTQQLA-KVDSVAAGAQYD-KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (865)
Q Consensus 594 ~~~~~~~--~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 669 (865)
.+.+..- ..++..+++...+.+..-... ..+.+ ...+++ ..-....+++...++.++|..|.+++.. +++-++
T Consensus 644 ~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~-~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~--i~~~~l 720 (1073)
T 3gjx_A 644 GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVD-ILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGR--IYLDML 720 (1073)
T ss_dssp TTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCch-hccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHH--HHHHHH
Confidence 9888743 445666666665555443221 01111 011111 0123356777778888999988888765 544433
Q ss_pred HHhc------------C-----CChh------HHHHHHHHHHHHHhhchh--h-hHhhHHHHHHHHHHhcCCCCCCCchh
Q 002921 670 QCCM------------D-----DASD------VRQSAFALLGDLARVCPV--H-LQARLSDFLDIAAKQLNTPKLKETVS 723 (865)
Q Consensus 670 ~~l~------------~-----~~~~------vr~~a~~~l~~l~~~~~~--~-~~~~~~~~l~~l~~~l~~~~~~~~~~ 723 (865)
...+ + +.+. +|.+.+.++...+....+ . ...+++.++..++..-... .+.
T Consensus 721 ~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~----~p~ 796 (1073)
T 3gjx_A 721 NVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRN----VPA 796 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHS----CGG
T ss_pred HHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcC----Ccc
Confidence 3211 0 1121 355566666666654421 1 1233344444433322221 223
Q ss_pred HHH-HHHHHHHHHHHhccccccchHHHHHHHH----HHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccc----cHHHH
Q 002921 724 VAN-NACWAIGELAVKARQEISPIVMTVVLCL----VPILKHSEELNKSLIENSAITLGRLAWVCPELVSP----HMEHF 794 (865)
Q Consensus 724 ~~~-~a~~~l~~l~~~~~~~~~~~~~~il~~l----~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~~ 794 (865)
.|+ ....++..++...+..+.|.+..+++.+ +.++++...-.++.|.+....+.++...++..+.. ....+
T Consensus 797 ~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~ 876 (1073)
T 3gjx_A 797 AREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLV 876 (1073)
T ss_dssp GCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHH
Confidence 343 3445666778888877778777777664 45665543336789999999999999887775543 23445
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 002921 795 MQPWCIALSMIRDDTEKEDAFRGLCAMVKA 824 (865)
Q Consensus 795 l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 824 (865)
++..+-++.+ ...+.....++.+..++..
T Consensus 877 i~~i~wa~kh-~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 877 LDSIIWAFKH-TMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CChhHHHHHHHHHHHHHHH
Confidence 5555544443 2345566667777777654
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.61 E-value=1.6e-13 Score=151.93 Aligned_cols=365 Identities=16% Similarity=0.178 Sum_probs=246.0
Q ss_pred CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh-hcccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHH
Q 002921 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ-VLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLG 202 (865)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~ 202 (865)
+...|. ++.+.+.++++++..+..|...++.+...-.. ... .-.-..++|.++++|.+. ++.++..|+.
T Consensus 53 ~~~~~~--i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~-------~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~ 123 (510)
T 3ul1_B 53 GTVNWS--VEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-------NIIRAGLIPKFVSFLGKTDCSPIQFESAW 123 (510)
T ss_dssp CCSSCC--HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH-------HHHHTTHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred chhhhh--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH-------HHHHCCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 344553 78888999999999999999999887643211 000 001135789999999754 6899999999
Q ss_pred HHHHHhccccHHhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCC-----
Q 002921 203 SVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD----- 275 (865)
Q Consensus 203 ~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~----- 275 (865)
+|.+++...++......+ ..++.++.++.+++.++|..++.+|..++...+..-...+. ..++.++..+...+
T Consensus 124 aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 124 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 999998765433222222 35788888899999999999999999998765432111111 23444444544332
Q ss_pred HHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCC
Q 002921 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (865)
Q Consensus 276 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (865)
..+...+...+..++..+.....+ .....++|.+...+...++
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~------------------------------------ 246 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDP------------------------------------ 246 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCH------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcccchhHH-HHHHhHHHHHHHHHhcCCH------------------------------------
Confidence 334556666777776652221111 2234566666555443211
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhhCcc----hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH
Q 002921 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (865)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 431 (865)
.++..|..+|..++....+. .-..+++.+.+++.+++ ...+..++.+++.++.+........+
T Consensus 247 ----------~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 247 ----------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp ----------HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC---hhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 26777888888887644321 12346788888899888 99999999999999876554322222
Q ss_pred H-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 002921 432 S-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 432 ~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (865)
. ..++.+...+.++++.+|..|+|++++++..-... ...-.-..+++.++..+.+.+..+|..|+++|.+++...
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHH----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 2 25667778889999999999999999987543211 011112357889999999999999999999999998765
Q ss_pred ccchhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 511 AEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 511 ~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
...-..++ ...++.|+.++...+.+.+..+++++..+.+..+
T Consensus 390 ~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 33322222 2467888889988888888889999998887543
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-14 Score=143.09 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=171.6
Q ss_pred hhHHHHHHhhccCCCcchhHHHHHHHHHHH-HHhchhhhh--hccHHHHHHHHHhcc-CCCChHHHHHHHHHHHhhHHHH
Q 002921 389 TLMPVIQAKLSASGDEAWKDREAAVLALGA-IAEGCIKGL--YPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 389 ~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~-l~~~~~~~~--~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
.+-+-+.+.+++.+ |+.|.+|+..|+. +++++++.. ...+..++..+.+.+ +|+|+.||..|+.+++.+++.+
T Consensus 16 kl~~~f~~~l~s~~---w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 16 KLPKDFQERITSSK---WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp GSCTTHHHHHTCSS---HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hCChhHHHHhhcCC---HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 33334556778888 9999999999999 988877654 445567899999999 8999999999999999999888
Q ss_pred h-hhhCCCcch-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccch-hhhHHHHHHHHHHHhcccchhhHHHHH
Q 002921 465 V-QDIGHQNGR-EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL-APRLEIILQHLMMAFGKYQRRNLRIVY 541 (865)
Q Consensus 465 ~-~~~~~~~~~-~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~ 541 (865)
. + ... +|...+++.++..+.|..+.|+..+..++..+++.+.... .+|++.+++.++..+++.+..++..++
T Consensus 93 ~~~-----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al 167 (249)
T 2qk1_A 93 KTP-----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECT 167 (249)
T ss_dssp CTT-----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred ccc-----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHH
Confidence 5 4 245 8999999999999999999999999999999999875422 234899999999999988888888999
Q ss_pred HHHHHHHHHhcc---cCCchhhH-hhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccc-cccchHHH
Q 002921 542 DAIGTLADAVGF---ELNQPVYL-DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG-FTQFAQPV 607 (865)
Q Consensus 542 ~~l~~l~~~~~~---~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~-~~~~~~~i 607 (865)
.+++.++...+. .+. +|+ +.++|.+.+.+.. .++.+ ..+.+|++.+++.+|+. +.||++.+
T Consensus 168 ~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 168 QLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999988774 344 688 9999999999854 34455 68999999999999984 88887774
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.60 E-value=4.5e-13 Score=149.37 Aligned_cols=361 Identities=15% Similarity=0.151 Sum_probs=245.1
Q ss_pred HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh-hcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHh
Q 002921 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ-VLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~ 208 (865)
..++.+.+.+.++++..+..|+..++.+...-.. ... .-.-..++|.++++|.. .++.++..|+.+|.+++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~-------~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia 148 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-------NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 148 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHH-------HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHH-------HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3477888899999999999999999887643211 000 01125678999999975 56899999999999998
Q ss_pred ccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCC-----HHHHHH
Q 002921 209 MLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD-----DDVALE 281 (865)
Q Consensus 209 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~-----~~v~~~ 281 (865)
...+......+ ...++.++.++.+++..++..++.+|..++...++.-...+. ..++.++..+...+ ..+...
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 76543322222 235788888899999999999999999998755432111111 23445555554432 334556
Q ss_pred HHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 002921 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (865)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (865)
+...+..++..+..... ......++|.+...+...++
T Consensus 229 a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~~~~~------------------------------------------ 265 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLHHNDP------------------------------------------ 265 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-HHHHHHHHHHHHHHTTSSCH------------------------------------------
T ss_pred HHHHHHHHHhcccchhh-HHHHhhHHHHHHHHhcCCcH------------------------------------------
Confidence 66667777665221111 12234566666655543211
Q ss_pred cccccHHHHHHHHHHHHHhhhCcc----hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHH
Q 002921 362 VNVWNLRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVA 436 (865)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~ 436 (865)
.++..|..+|..++....+. .-..+++.+.+++.+++ +..+..++.+++.++.+........+ ...++
T Consensus 266 ----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 266 ----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp ----HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred ----HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 25777888888877654321 12346788888899888 99999999999999876554322222 22667
Q ss_pred HHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhh
Q 002921 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (865)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (865)
.+...+.++++.+|..|+|+|++++..-... ...-.-..+++.++..+.+++..+|..|+++|.+++......-..
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHH----HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7888899999999999999999998643221 011112357888999999999999999999999998765332222
Q ss_pred hH--HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 517 RL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 517 ~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
++ ..+++.|+.+|...+.+.+..+++++..+....+
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 22 2467888899988888888888999988876543
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.59 E-value=9.9e-13 Score=145.58 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=251.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCC--------CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCc
Q 002921 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (865)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~---~~p--------~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~ 85 (865)
+..++.++.|.|.+ .+-+|...+.++. ++| |.++.|.++|.. +.++.+|..|+-.|.|....
T Consensus 59 i~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~~~~lq~~Aa~aL~nias~---- 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG---- 131 (510)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHhcC----
Confidence 56677788889988 9999999998863 244 567889999974 56789999999999876542
Q ss_pred CCHhHHHH-----HHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC--Ch--HHHHHHHHHhhccCCh-----hHHhHH
Q 002921 86 MSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDI-----NHMEGA 151 (865)
Q Consensus 86 ~~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~-----~~r~~a 151 (865)
+++.+.. ..+.|+.+|.+++..+|..++.+++.|+...+.. .. ...++.|...+.+++. ..+..+
T Consensus 132 -~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 132 -TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 3333333 3467888899999999999999999999753210 00 1246677777776543 344556
Q ss_pred HHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHhh
Q 002921 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLS 230 (865)
Q Consensus 152 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~ 230 (865)
..++..++..-..... -.....++|.+.+.+.+++++++..|+.+|..+....+...... -..+++.+..++
T Consensus 211 ~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHCCCSSCCC-------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhH-------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 6677777664322110 02346789999999999999999999999999987543222111 123567788888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHH
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 309 (865)
.+++..++..++.++..++...+......+. ..++.+...+.+.+++++..|+.++..++..
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~----------------- 346 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----------------- 346 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS-----------------
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC-----------------
Confidence 8888999999999998887544332211111 2333344445555556666655555554332
Q ss_pred HHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---ch
Q 002921 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (865)
Q Consensus 310 ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (865)
..+ .+
T Consensus 347 ------------------------------------------------------------------------~~~~~~~v 354 (510)
T 3ul1_B 347 ------------------------------------------------------------------------RQDQIQQV 354 (510)
T ss_dssp ------------------------------------------------------------------------CHHHHHHH
T ss_pred ------------------------------------------------------------------------cHHHHHHH
Confidence 111 00
Q ss_pred -hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH--HHHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 387 -LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 387 -~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
-..++|.+...+.+++ +..|..|+++|+.++.+.......++- .+++.++..+.++++.++..++++|.++...
T Consensus 355 ~~~g~i~~Lv~lL~~~~---~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKAD---FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0135666777777888 999999999999988765432222222 2678889999999999999999999998876
Q ss_pred HhhhhCCCcchhhHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 464 IVQDIGHQNGREQFEKV------LMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 464 ~~~~~~~~~~~~~~~~~------~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
.... .....+..+ +..+-....+++..|+..|...+..+.
T Consensus 432 ~~~~----~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 432 AEKL----GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHTT----TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred hHhc----cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 5422 111112222 333333334678889998888877665
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=2.7e-11 Score=136.24 Aligned_cols=516 Identities=11% Similarity=0.058 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH
Q 002921 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (865)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (865)
-++.+..++......+ ..+.++..+.+++.+++...|+.+...+..+++..++. .--+.+.+.+-
T Consensus 55 k~~~l~Kli~l~~~G~---d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~------------~~L~iN~l~kD 119 (621)
T 2vgl_A 55 KKKYVCKLLFIFLLGH---DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSEL------------IRLINNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHSC---CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHH------------HHHHHHHHHHh
Confidence 3444444444433322 22346777888999999999999999998877654432 23456778888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 002921 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (865)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 266 (865)
++++++.+|..|+.+++.+.. ....+.+++.+...+ .+.++.+|+.|+-++..+....|+.+.. +.+++.
T Consensus 120 l~~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~ 191 (621)
T 2vgl_A 120 LASRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSR 191 (621)
T ss_dssp HHSCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHH
T ss_pred cCCCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHH
Confidence 999999999999999999853 223455677788888 8899999999999999999988877652 244455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCCh---hhhhhhhhcccCCCCCccCCCCccc
Q 002921 267 MLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD---DDESLVEAEEDESLPDRDQDLKPRF 343 (865)
Q Consensus 267 l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~---~d~~~~~~~~~~~~~~~~~~i~~~~ 343 (865)
+...+.|.+..|+..|+.++..++.. .+..+.++++.++..+.+.+...+ ++.. +
T Consensus 192 l~~lL~d~d~~V~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~-~------------------- 249 (621)
T 2vgl_A 192 VVHLLNDQHLGVVTAATSLITTLAQK--NPEEFKTSVSLAVSRLSRIVTSASTDLQDYT-Y------------------- 249 (621)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH--CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTE-E-------------------
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHhCCCCCccchh-h-------------------
Confidence 55566788999999999999998775 334455556665555544332210 0000 0
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhcc----C---C----CcchhHHHHH
Q 002921 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----S---G----DEAWKDREAA 412 (865)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~----~---~----~~~~~~r~~a 412 (865)
-...+.| .+....+++..++..-.......+.+.+...++. + . +....+...+
T Consensus 250 ---------------~~~~~~w-~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 250 ---------------YFVPAPW-LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp ---------------TTEESHH-HHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred ---------------cCCCCch-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 0001124 1222233332222110112222222333222211 1 0 0002344444
Q ss_pred HHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHc-CC
Q 002921 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DT 491 (865)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-d~ 491 (865)
..++..+. ...+.+...+..+...+.++++.+|..++.++..++...+ ....+......++.++. |+
T Consensus 314 ~~~i~~l~-----~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-------~~~~~~~~~~~i~~~L~~d~ 381 (621)
T 2vgl_A 314 ISLIIHHD-----SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF-------SHEAVKTHIETVINALKTER 381 (621)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-------THHHHHTTHHHHHHHHTTCC
T ss_pred HHHHHhcC-----CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-------cHHHHHHHHHHHHHHhccCC
Confidence 44444442 1123455677777888888999999999999988875321 12455666778888898 99
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH
Q 002921 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (865)
Q Consensus 492 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (865)
+..||..+...+..++.. ..+..++..|...+.+.+...+..+..+|+.++....+... -|++.++ +.
T Consensus 382 d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~--~~v~~Ll----~l 449 (621)
T 2vgl_A 382 DVSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT--WYVDTIL----NL 449 (621)
T ss_dssp CHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH--HHHHHHH----HH
T ss_pred CHhHHHHHHHHHHHHcCh------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHH----HH
Confidence 999999999988777643 24677777778888777777777888899998887765543 4555444 33
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHh
Q 002921 572 WQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (865)
Q Consensus 572 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~ 651 (865)
+...+ +.....+...+..++... +.+..| .+..+++.+.. + +....+...+.-++|.....+
T Consensus 450 l~~~~--~~v~~ev~~~l~~ii~~~-~~~~~~---~~~~l~~~l~~-------~-----~~~~~li~~~~wilGEy~~~~ 511 (621)
T 2vgl_A 450 IRIAG--DYVSEEVWYRVIQIVINR-DDVQGY---AAKTVFEALQA-------P-----ACHENLVKVGGYILGEFGNLI 511 (621)
T ss_dssp HHHHG--GGSCSHHHHHHHHHHGGG-CSCHHH---HHHHHHHHHTS-------S-----SCCHHHHHHHHHHHHHHTHHH
T ss_pred HHhhc--ccchHHHHHHHHHHHhCC-hhHHHH---HHHHHHHHHcC-------c-----cchHHHHHHHHHHhcchHHHh
Confidence 33221 111123444444444322 223333 23333333221 0 001122222333344333322
Q ss_pred hhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 002921 652 GSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWA 731 (865)
Q Consensus 652 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~ 731 (865)
... +......++..+...+...+..+|..++.++..+....++ ..+.+..++..... .++. +.++|+-|...
T Consensus 512 ~~~--~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-~~~~i~~~l~~~~~-~~~~----d~evrdRA~~y 583 (621)
T 2vgl_A 512 AGD--PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-VKATIQDVLRSDSQ-LKNA----DVELQQRAVEY 583 (621)
T ss_dssp HSS--TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHSSHHH-HSCS----SHHHHHHHHHH
T ss_pred ccc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHhc-CCCC----CHHHHHHHHHH
Confidence 211 1110013566677677788999999998888888776543 33333333332221 1244 78999988766
Q ss_pred HHHH
Q 002921 732 IGEL 735 (865)
Q Consensus 732 l~~l 735 (865)
..-+
T Consensus 584 ~~Ll 587 (621)
T 2vgl_A 584 LRLS 587 (621)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=9.9e-14 Score=137.36 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=172.7
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC-CCChHHHHHHHHHHHhhHHH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 463 (865)
++...+.+.+.+.+++.+ |+.|.+|+..|+.+++++++.....+.++++.+...+. |++..||..|+.+++.++..
T Consensus 11 di~~~l~~~l~~~l~s~~---w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKK---WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp CCGGGSCTTHHHHHTCSS---HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHhhhccCC---HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 334444555667778888 99999999999999998665444556789999999994 99999999999999999998
Q ss_pred HhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHH
Q 002921 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (865)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (865)
+.. ...+|...+++.+++.+.|+++.||..|+.++..++...+ ++.+++.+...+++.+..++..++..
T Consensus 88 l~~-----~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 88 LAK-----RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HGG-----GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred Hhh-----hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 764 3578999999999999999999999999999999987542 56788888889988877888899999
Q ss_pred HHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccc-cccchHHHHHHHHHHHH
Q 002921 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG-FTQFAQPVFQRCINIIQ 616 (865)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~ 616 (865)
++.++...++.....+|++.++|.+.+.+.. ..+.+ ..+.+|++.++..+|.. +.+|++.+-+.-.+.+.
T Consensus 157 l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~ 228 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIK 228 (242)
T ss_dssp HHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHH
Confidence 9998877764311127999999999999853 33444 68899999999999985 88888776444443333
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.56 E-value=3.5e-12 Score=142.17 Aligned_cols=382 Identities=13% Similarity=0.092 Sum_probs=251.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCC--------CcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhC
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYS---QFP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~---~~p--------~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~ 84 (865)
.+..++.++.|+|.+ .+-+|...+.++. ++| |.++.|.++|.. +.++.++..|+-.|.+....
T Consensus 77 ~l~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~~~~~q~~Aa~aL~nia~~--- 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG--- 150 (529)
T ss_dssp CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcC---
Confidence 356677788888888 8889999888753 233 567788888864 66789999999999876643
Q ss_pred cCCHhHH-----HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc--CCh--HHHHHHHHHhhccCCh-----hHHhH
Q 002921 85 SMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSNDI-----NHMEG 150 (865)
Q Consensus 85 ~~~~~~~-----~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--~~w--~~ll~~l~~~l~~~~~-----~~r~~ 150 (865)
+.+.. ....+.|+.+|.+++..+|..++.+++.|+...+. ... ...++.|...+.+++. .....
T Consensus 151 --~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 151 --TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 22222 23456788888999999999999999999975311 000 1235677777776543 34556
Q ss_pred HHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHh-HHHHHHHHHHh
Q 002921 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLL 229 (865)
Q Consensus 151 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~ 229 (865)
+..++..++........ -.....++|.+.+.+.+++++++..|+.+|..+....+...... -..+++.+..+
T Consensus 229 a~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 66777777664332110 02346789999999999999999999999999987643322111 12356778888
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhchhhhhhhH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHH
Q 002921 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (865)
Q Consensus 230 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 308 (865)
+.+++..++..++.++..++...+......+ ...++.+...+.+.+++++..|+.++..++..
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~---------------- 365 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG---------------- 365 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS----------------
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc----------------
Confidence 8888999999999999988754433211111 12333444445555555665555555544332
Q ss_pred HHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---c
Q 002921 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E 385 (865)
Q Consensus 309 ~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~ 385 (865)
... .
T Consensus 366 -------------------------------------------------------------------------~~~~~~~ 372 (529)
T 3tpo_A 366 -------------------------------------------------------------------------RQDQIQQ 372 (529)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred -------------------------------------------------------------------------cHHHHHH
Confidence 111 0
Q ss_pred h-hhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH--HHHHHHHhccCCCChHHHHHHHHHHHhhHH
Q 002921 386 I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (865)
Q Consensus 386 ~-~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (865)
+ -..++|.+...+.+++ +..|..|+++|+.++.+.......++- .+++.++..|.++++.++..++++|..+..
T Consensus 373 v~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKAD---FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0 0135566677778888 899999999999988765432222222 268888999999999999999999999887
Q ss_pred HHhhhhCCCcchhhHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 463 FIVQDIGHQNGREQFEKV------LMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~------~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
..... .....+..+ +..+-....+++..|+..|...+..+..
T Consensus 450 ~~~~~----~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 450 AAEKL----GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHTT----TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HhHhc----cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 65421 111122222 2333333346788999998888876653
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-12 Score=128.82 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=163.7
Q ss_pred ccccHHHHHHHHHHH-HHhhhCc-----chhhhhHHHHHHhh-ccCCCcchhHHHHHHHHHHHHHhchh-hhhh-ccHHH
Q 002921 363 NVWNLRKCSAAALDV-LSNVFGD-----EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLSE 433 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~-l~~~~~~-----~~~~~~~~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~-~~l~~ 433 (865)
..|.-|+.|...|.. +.+..++ .-+..++..+.+.+ ++.+ ..+|.+|+.+++.++++.. +.+. +|...
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n---~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN---IQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 569999999999988 8755332 12346677888888 6778 9999999999999999998 8888 99999
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc--
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-- 511 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-- 511 (865)
++|.++..++|..+.||.++..++..+++.+.+. ....+++.+++.++..+++.++.+|..++.++..++...+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999876431 1113478899999999999999999999999999999876
Q ss_pred -cchhhhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhh
Q 002921 512 -EELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (865)
Q Consensus 512 -~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l 564 (865)
..+.+|+ +.+++.+.+.+.+.+..++..+.++++.++..+|+.... +|++.+
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~-p~l~~L 234 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV-KTLEHL 234 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH-HHHHHS
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 5688999 999999999999998899999999999999999986221 454443
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=2.3e-12 Score=127.43 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=161.3
Q ss_pred ccccHHHHHHHHHHHHHhhhCc---chhhhhHHHHHHhhc-cCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHH
Q 002921 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 438 (865)
.+|..|+.|...|..+....++ ..+..+++.+...+. +.+ ..+|.+|+.+++.++...++.+.++.+.++|.+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~---~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN---VVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5699999999999999887432 234677888888885 888 999999999999999999888899999999999
Q ss_pred HhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-c-chhh
Q 002921 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-E-ELAP 516 (865)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~-~~~~ 516 (865)
+..+.|+++.||.+|+.++..+.... .+..+++.+...+++.++.+|..++..++.++...+ + ...+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99999999999999999998876632 246788999999999999999999999999887763 3 4688
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhccc-CCchhhHhhhhH
Q 002921 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE-LNQPVYLDILMP 566 (865)
Q Consensus 517 ~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~ 566 (865)
|++.+++.+...+.+.+..++..+.++++.++..+|.+ +. +|++.+-+
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~--~~l~~L~~ 221 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVT--PLLADVDP 221 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHG--GGGTTSCH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHH--HHHHhcCH
Confidence 99999999999999988899999999999999999976 33 56655543
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.9e-08 Score=109.73 Aligned_cols=547 Identities=10% Similarity=0.063 Sum_probs=312.8
Q ss_pred CChHHHHHHHHHhhc-cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh--cCCCHHHHHHHHHH
Q 002921 127 AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF--QSPHTSLRKLSLGS 203 (865)
Q Consensus 127 ~~w~~ll~~l~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~vr~~a~~~ 203 (865)
+.-..++..|...+. ..++ ...--+.++.+++..+...+. + +..+++.+ ....+++|..++-+
T Consensus 128 ~~~~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~------------~-~~~l~~~~~~~~~~~~~~~~~l~i 193 (778)
T 3opb_A 128 DATIALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFK------------E-VRFLVKELILRISEDEVKSMMLII 193 (778)
T ss_dssp GGGHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCST------------T-TTHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCcccc------------c-hhhHHHHhccccChhhhHHHHHHH
Confidence 344567777766666 3344 444567777788887765442 2 33333333 44678999999999
Q ss_pred HHHHhccccHHhHHhHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH--HHHHHHHhhhc-CCCCHHHH
Q 002921 204 VNQFIMLMPSALFVSMDQYLQGLF-LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVN-KDTDDDVA 279 (865)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l--~~l~~~l~~~~-~~~~~~v~ 279 (865)
+..+.+..++.+.+.+..++..++ ..-.+...+-...++.++..+-...|+.....+ +.+.+.+.... ...+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~ 273 (778)
T 3opb_A 194 FAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFT 273 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHH
Confidence 999998877777777777777444 321121122233455555555444443322211 12233333333 34567777
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 002921 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (865)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (865)
..+++.+...|..+.++..+..++ ++.+.+.+.. +
T Consensus 274 ~a~L~lLsaACi~~~cR~~I~~~~---~~~L~~~l~~--~---------------------------------------- 308 (778)
T 3opb_A 274 KELLRLLSSACIDETMRTYITENY---LQLLERSLNV--E---------------------------------------- 308 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHH---HHHHHHHTTS--G----------------------------------------
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhH---HHHHHHHhcc--H----------------------------------------
Confidence 888999998887755655554332 2333222211 0
Q ss_pred cccccccHHHHHHHHHHHHHhhhCc--chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh--hhhhccHHHHH
Q 002921 360 DIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYPHLSEIV 435 (865)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~i~ 435 (865)
.+|..|...|-.+....+. .-+..+.+.+..++.+++ -..|+-|+..|+.+..... +.+... ...+
T Consensus 309 ------~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~---~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L 378 (778)
T 3opb_A 309 ------DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRI---VPKVEMSVEALAYLSLKASVKIMIRSN-ESFT 378 (778)
T ss_dssp ------GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHH
T ss_pred ------HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHH
Confidence 1577788888777665432 334567888888888766 5668888888888765432 222111 2345
Q ss_pred HHHHhccCC-CChHHHHHHHHHHHhhHHHHhhhhC----------------C----Ccc----hhh----------HHHH
Q 002921 436 AFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIG----------------H----QNG----REQ----------FEKV 480 (865)
Q Consensus 436 ~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~----------------~----~~~----~~~----------~~~~ 480 (865)
+.++..+++ .+..+-+.++.++.+++...+.... | ... ... -..+
T Consensus 379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence 666666664 4556677777777776654321000 0 000 000 1236
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchh---hHHHHHHHHHHHHHHhcccCCc
Q 002921 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR---NLRIVYDAIGTLADAVGFELNQ 557 (865)
Q Consensus 481 ~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~---~~~~~~~~l~~l~~~~~~~~~~ 557 (865)
++.|+..+.++++.+|..|++++.+++..-...-.-.-...++.|+..+.+.... .+..+..++..+.....+...-
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f 538 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc
Confidence 7888888888899999999999999986521111111134567777787766443 5678889998888654322100
Q ss_pred hhh-HhhhhHHHHHHHhcCCCCC---------cc---hhhHHHHHHHHHHHhc---cccccc-h--HHHHHHHHHHHHHH
Q 002921 558 PVY-LDILMPPLIAKWQQLPNSD---------KD---LFPLLECFTSIAQALG---AGFTQF-A--QPVFQRCINIIQTQ 618 (865)
Q Consensus 558 ~~~-~~~l~~~l~~~l~~~~~~~---------~~---~~~~~~~l~~l~~~~~---~~~~~~-~--~~i~~~l~~~l~~~ 618 (865)
+.| ....+|+|++.+......+ .. ...++.++++++..-+ +..... + ...++.+.+.+.+
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s- 617 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD- 617 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-
Confidence 011 1267788888887211111 11 2457777888876431 111110 1 1133333333221
Q ss_pred HHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhh-hhhccc--ch---HHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 002921 619 QLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-ESLVAQ--SN---LRDMLLQCCMDDASDVRQSAFALLGDLAR 692 (865)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~--~~---l~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 692 (865)
....++..+.+++++++..-. .. ..++.. +. =++++...++..+.++|.+|.++++.+..
T Consensus 618 -------------~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 618 -------------ENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp -------------SSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 134677889999999996322 22 233321 11 27788888888999999999999999876
Q ss_pred hchhhhHhhH--HHHHHHHHHhcCC--CCCCCchhHHHHHHHHHHHHHHhccc-----cccchH--HHHHHHHHHHhcCc
Q 002921 693 VCPVHLQARL--SDFLDIAAKQLNT--PKLKETVSVANNACWAIGELAVKARQ-----EISPIV--MTVVLCLVPILKHS 761 (865)
Q Consensus 693 ~~~~~~~~~~--~~~l~~l~~~l~~--~~~~~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~--~~il~~l~~~l~~~ 761 (865)
..+......+ ...++.+...+++ + +.+++..++.++.+++...+. .+..+. ..+.+.+..++..+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~----~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQID----DIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 5442211111 2234444444444 4 679999999999999974432 222222 33455555555554
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.30 E-value=4.4e-10 Score=112.25 Aligned_cols=245 Identities=17% Similarity=0.112 Sum_probs=170.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhh
Q 002921 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (865)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 259 (865)
.+|.+++.++++++.+|..|+.++..+....++...... ...++.+...+.+++..++..++.+|..++...++.-...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 378889999999999999999999999876542222222 2467888888888889999999999999987544432222
Q ss_pred HH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCC
Q 002921 260 LR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (865)
Q Consensus 260 l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~ 338 (865)
.. ..++.++..+.+.+++++..++.++..++.. ....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~---------------------------------------- 120 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEA---------------------------------------- 120 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHH----------------------------------------
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHH----------------------------------------
Confidence 22 4566666777777788888888777776542 0000
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002921 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (865)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~ 418 (865)
+... .-...++.+.+.+.+++ +..|..++.+|+.
T Consensus 121 -----------------------------~~~~--------------~~~~~i~~L~~~l~~~~---~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 121 -----------------------------IKAI--------------VDAGGVEVLVKLLTSTD---SEVQKEAARALAN 154 (252)
T ss_dssp -----------------------------HHHH--------------HHTTHHHHHHHHTTCSC---HHHHHHHHHHHHH
T ss_pred -----------------------------HHHH--------------HHCCCHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 0000 00123555666677777 8899999999999
Q ss_pred HHhchhhhhhccH-HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHH
Q 002921 419 IAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (865)
Q Consensus 419 l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~ 497 (865)
++.+..+...... ..+++.++..+.++++.+|..|++++++++..-+.. ...-.-..+++.+++.+.++++.+|.
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA----IKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH----HHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH----HHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 9876543222111 347888999999999999999999999988632211 00111235788899999999999999
Q ss_pred HHHHHHHHHHHHhccchhhh
Q 002921 498 AACSAFATLEEEAAEELAPR 517 (865)
Q Consensus 498 ~a~~al~~l~~~~~~~~~~~ 517 (865)
.|+++|.++.........+|
T Consensus 231 ~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 231 EAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHHHHHcCCCcccccc
Confidence 99999999998765444433
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.25 E-value=6.8e-09 Score=113.20 Aligned_cols=367 Identities=13% Similarity=0.097 Sum_probs=226.6
Q ss_pred cCChH-HHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002921 126 IAGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (865)
Q Consensus 126 ~~~w~-~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l 204 (865)
+..|. .-++.+++.+.++++..+..|..+|..++....+.-.. -.-...+|.++++|.+++..++..|+.+|
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~-------V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTD-------VRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHH-------HHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 44553 35788889999999999999999999888644332100 01135689999999999999999999999
Q ss_pred HHHhccccHHhHHhH--HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhchh---hhhhhHHHHHHHHhh---h-----
Q 002921 205 NQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFEYMLQ---V----- 270 (865)
Q Consensus 205 ~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~---~~~~~l~~l~~~l~~---~----- 270 (865)
.+++....+.....+ ...++.|+.++.+ .+.+++..+..+|..++..... ....-++.++..+.. .
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 999864212212111 1346667776664 5678899999999888763221 122223444443310 0
Q ss_pred ------cCCCCHHHHHHHHHHHHHhhccC-CchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccc
Q 002921 271 ------NKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (865)
Q Consensus 271 ------~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~ 343 (865)
....+.+++..|..+|..++... ..+..+.. ...+++.++..+.....+. +
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~-----~---------------- 252 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQK-----D---------------- 252 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTT-----C----------------
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhccc-----C----------------
Confidence 11235789999999999997652 12333332 1344445544443210000 0
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh---------------------------Ccch--hhhhHHHH
Q 002921 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---------------------------GDEI--LPTLMPVI 394 (865)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---------------------------~~~~--~~~~~~~l 394 (865)
.+ -....-|..+|..|+... |-+. -+..++.+
T Consensus 253 -------------~~------~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 253 -------------SD------SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp -------------CS------CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred -------------cc------HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 00 001222222222222111 1111 13445666
Q ss_pred HHhhcc-CCCcchhHHHHHHHHHHHHHhchh---hhhhccH--HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002921 395 QAKLSA-SGDEAWKDREAAVLALGAIAEGCI---KGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (865)
Q Consensus 395 ~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (865)
...+.+ .+ ...+++|+.+|..++.+-. ..+...+ ...+|.++..+.+++..++..|+|+|++++..-.
T Consensus 314 l~LL~~s~~---~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--- 387 (584)
T 3l6x_A 314 ISLLKESKT---PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--- 387 (584)
T ss_dssp HHHHHHCCC---HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS---
T ss_pred HHHHccCCC---HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh---
Confidence 666754 45 8999999999999986532 1222222 4578999999999999999999999999987422
Q ss_pred CCCcchhhHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHHHhccchhhh-HHHHHHHHHHHhccc--chhhH
Q 002921 469 GHQNGREQFEKVLMGLLKRILDT--------NKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY--QRRNL 537 (865)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~l~d~--------~~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~--~~~~~ 537 (865)
.....-...++.|+..|.++ +..++..||.+|++++....+..... -...++.|..++.+. .....
T Consensus 388 ---~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 388 ---NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp ---CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred ---HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 22333467889999988865 36788999999999985432222222 235778888888764 55667
Q ss_pred HHHHHHHHHHHH
Q 002921 538 RIVYDAIGTLAD 549 (865)
Q Consensus 538 ~~~~~~l~~l~~ 549 (865)
+.+..++..+..
T Consensus 465 k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 465 RAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 777777777653
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.24 E-value=1.4e-09 Score=118.17 Aligned_cols=378 Identities=13% Similarity=0.105 Sum_probs=218.1
Q ss_pred HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
+|.+.+.+.++++..+..|+.+|..++..-...- .. -.-...+|.+++.|.++++.++..|+.+|.++....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~-~~------i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-QQ------VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHH-HH------HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHH-HH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 5778888888999999999999999885432210 00 0124568999999999999999999999999987533
Q ss_pred HHhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhchhhhhh-hHHHHHHHHhhhc--------CC-------
Q 002921 213 SALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVN--------KD------- 273 (865)
Q Consensus 213 ~~~~~~~--~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~-~l~~l~~~l~~~~--------~~------- 273 (865)
+ ....+ ...++.+..++. +++.+++..+..+|..++.. ++ .+. .+...++.++..+ .+
T Consensus 77 ~-~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 77 T-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp H-HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred H-HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 2 22211 134677778787 77899999999999999975 22 111 2224555555555 11
Q ss_pred -CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChh----hhhhh-------hhc---ccCCCCCccCC
Q 002921 274 -TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADD----DESLV-------EAE---EDESLPDRDQD 338 (865)
Q Consensus 274 -~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----d~~~~-------~~~---~~~~~~~~~~~ 338 (865)
.+.++...|..++..++..+..+..+... +..++.++..+..... +.... .+- .....+.+...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~ 232 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHc-CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh
Confidence 24567778888898888652222222110 1455555554442100 00000 000 00000000000
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh-----------------hCcc--hhhhhHHHHHHhhc
Q 002921 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-----------------FGDE--ILPTLMPVIQAKLS 399 (865)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~-----------------~~~~--~~~~~~~~l~~~l~ 399 (865)
+.+... .... ......+++..... -|.+ .-...++.+...+.
T Consensus 233 ~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~ 293 (457)
T 1xm9_A 233 LEYNAR-------NAYT------------EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293 (457)
T ss_dssp HHHTC-----------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred cccccc-------cccc------------cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence 000000 0000 00001111111000 0101 11334556666666
Q ss_pred cCCCcchhHHHHHHHHHHHHHhchhh---hh-hccH--HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002921 400 ASGDEAWKDREAAVLALGAIAEGCIK---GL-YPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (865)
Q Consensus 400 ~~~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (865)
++.+ ...+++|+++|+.++.+..+ .+ ...+ ...+|.++..+.+++..++..|+|+|++++..-. ..
T Consensus 294 ~~~~--~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~------~~ 365 (457)
T 1xm9_A 294 KSKK--DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL------LH 365 (457)
T ss_dssp HCCC--HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG------GH
T ss_pred hcCC--HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH------HH
Confidence 5432 88999999999999875432 22 1122 2467889999999999999999999999987421 12
Q ss_pred hhhHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHhccchhhh-HHHHHHHHHHHhccc-chhhHHHHHHHHH
Q 002921 474 REQFEKVLMGLLKRILDTN------KRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY-QRRNLRIVYDAIG 545 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~------~~vr~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~-~~~~~~~~~~~l~ 545 (865)
...-...++.+++.|.+++ ..+...++.++.+++....+..... -...++.|..++.+. +.+..+.+...+.
T Consensus 366 ~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 2233568888999888753 3688889999998875432221111 125677777777776 6667777777766
Q ss_pred HHH
Q 002921 546 TLA 548 (865)
Q Consensus 546 ~l~ 548 (865)
.+.
T Consensus 446 ~~~ 448 (457)
T 1xm9_A 446 DMW 448 (457)
T ss_dssp TTS
T ss_pred HHH
Confidence 443
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.21 E-value=3.5e-09 Score=105.62 Aligned_cols=239 Identities=17% Similarity=0.116 Sum_probs=168.9
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
-++.|.+.+.++++..|..|+.+|..++...++.... -.-...++.+.+.+.++++.+|..|+.+|..+....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3678889999989999999999999998765532110 011467899999999999999999999999998754
Q ss_pred cHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 212 PSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 212 ~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
++...... ...++.+...+.++++.++..++.+|..++...++....... ..++.++..+.+.+++++..++.++..+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32211111 135788888888889999999999999998655443222222 4566677777777788888888777776
Q ss_pred hccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 002921 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (865)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 369 (865)
+... .....
T Consensus 156 ~~~~--~~~~~--------------------------------------------------------------------- 164 (252)
T 4hxt_A 156 ASGP--DEAIK--------------------------------------------------------------------- 164 (252)
T ss_dssp TTSC--HHHHH---------------------------------------------------------------------
T ss_pred HcCC--HHHHH---------------------------------------------------------------------
Confidence 5431 00000
Q ss_pred HHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChH
Q 002921 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPL 448 (865)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~ 448 (865)
.. .-...++.+.+.+.+++ +..|..++.+|+.++.+..+...... ..+++.+...++++++.
T Consensus 165 ---~~-----------~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 165 ---AI-----------VDAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp ---HH-----------HHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred ---HH-----------HHCcCHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 00 00134555666677777 88999999999998875443322222 23788899999999999
Q ss_pred HHHHHHHHHHhhHHHHh
Q 002921 449 IRSISCWTLSRFSKFIV 465 (865)
Q Consensus 449 vr~~a~~~l~~l~~~~~ 465 (865)
+|..|+++|++++....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999998643
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.19 E-value=1.8e-09 Score=107.68 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=164.7
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
-++.+...+.++++..+..|+.+|..+.....+.... -.-...+|.+++.++++++.+|..|+.+|..+....
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~-------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHH-------HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHH-------HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4677788888999999999999997665542221110 012467899999999999999999999999998754
Q ss_pred cHHhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHh
Q 002921 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (865)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~v~~~a~~~l~~l 289 (865)
+........ ..++.+...+.++++.++..++.+|..++...+....... ...++.++..+.+.+.+++..++.++..+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 332222121 3678888888888999999999999999876544322222 24666777777777777887777777766
Q ss_pred hccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 002921 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (865)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 369 (865)
+... .... .
T Consensus 166 ~~~~--~~~~---------------------------------------------------------------------~ 174 (252)
T 4db8_A 166 ASGG--NEQI---------------------------------------------------------------------Q 174 (252)
T ss_dssp TTSC--HHHH---------------------------------------------------------------------H
T ss_pred HcCC--hHHH---------------------------------------------------------------------H
Confidence 5431 0000 0
Q ss_pred HHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhccCCCChH
Q 002921 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPL 448 (865)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~ 448 (865)
.. .-...++.+.+.+.+++ ...|..++.+|+.++.+..+....... .+++.+...+.++++.
T Consensus 175 ~~--------------~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 175 AV--------------IDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237 (252)
T ss_dssp HH--------------HHTTCHHHHHHGGGCSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSH
T ss_pred HH--------------HHCCCHHHHHHHHCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHH
Confidence 00 00134566667777777 889999999999998655443333232 3788899999999999
Q ss_pred HHHHHHHHHHhhHH
Q 002921 449 IRSISCWTLSRFSK 462 (865)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (865)
+|..|+++|++++.
T Consensus 238 v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 238 IQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998864
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.19 E-value=1.4e-09 Score=110.36 Aligned_cols=252 Identities=13% Similarity=0.058 Sum_probs=175.7
Q ss_pred HHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
++.|.+.+.++++.+|..|+.+|+.+.. +..++.+.+.++++++.+|..|+.+|+.+....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~- 85 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG------------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK- 85 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-
Confidence 5677788889999999999999977641 456888899999999999999999998875321
Q ss_pred HHhHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhc
Q 002921 213 SALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (865)
Q Consensus 213 ~~~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~ 291 (865)
..++.+++.+.. .+.++++.+|..++.+|..+....+. +.+.+++.+...+.+.++.+|..++..+..+..
T Consensus 86 ----~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 86 ----KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ----TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 113334555542 45678899999999999988765432 234567777778889999999999998876643
Q ss_pred cCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002921 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (865)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (865)
. ..++.++..+.. .++.+|..|
T Consensus 158 ~------------~~~~~L~~~l~d----------------------------------------------~~~~vr~~a 179 (280)
T 1oyz_A 158 K------------ATIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_dssp -------------CCHHHHHHHHTC----------------------------------------------SSHHHHHHH
T ss_pred H------------HHHHHHHHHHcC----------------------------------------------CCHHHHHHH
Confidence 2 123333332221 113489999
Q ss_pred HHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHH
Q 002921 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (865)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 451 (865)
...++.+... -+..++.+...+++++ +.+|..++.+|+.+.. +..++.+...++|++ ||.
T Consensus 180 ~~aL~~~~~~-----~~~~~~~L~~~l~d~~---~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~ 239 (280)
T 1oyz_A 180 AFAININKYD-----NSDIRDCFVEMLQDKN---EEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYD 239 (280)
T ss_dssp HHHHHHHTCC-----CHHHHHHHHHHTTCSC---HHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCH
T ss_pred HHHHHhhccC-----cHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHH
Confidence 9999776311 2355677777888888 9999999999998762 124566677777765 889
Q ss_pred HHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 002921 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFA 504 (865)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~ 504 (865)
.|.++++++.. ...++.+.+.+.+ +++.++..+..++.
T Consensus 240 ~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 240 DIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 99998887642 1345667777765 45666666665553
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.17 E-value=2.6e-09 Score=116.02 Aligned_cols=361 Identities=13% Similarity=0.098 Sum_probs=223.4
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhcc-HHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhC
Q 002921 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH-LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (865)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (865)
+|.+..++++++ +..+..|+.+|..++.+..+.-... -...+|.++..++++++.++..|+++|.+++..-++.
T Consensus 4 l~~lv~~L~s~~---~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-- 78 (457)
T 1xm9_A 4 IPKAVQYLSSQD---EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-- 78 (457)
T ss_dssp HHHHHHHHHSSC---THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH--
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH--
Confidence 566777888888 8999999999999986433211111 1237889999999999999999999999998631110
Q ss_pred CCcchhh-HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHhc--------cc------
Q 002921 470 HQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFG--------KY------ 532 (865)
Q Consensus 470 ~~~~~~~-~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~--------~~------ 532 (865)
.... -...++.+++.|. ++++.+++.|+++|.+++.. +.... .....++.|+.++. +.
T Consensus 79 ---k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 79 ---KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp ---HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred ---HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 1111 2356889999998 77899999999999999865 22222 33477888888883 22
Q ss_pred --chhhHHHHHHHHHHHHHHhcccCCchhhH--hhhhHHHHHHHhcC----CCCCcchhhHHHHHHHHHHHh--------
Q 002921 533 --QRRNLRIVYDAIGTLADAVGFELNQPVYL--DILMPPLIAKWQQL----PNSDKDLFPLLECFTSIAQAL-------- 596 (865)
Q Consensus 533 --~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~~~----~~~~~~~~~~~~~l~~l~~~~-------- 596 (865)
+...++.+..++..++.. . +.. .... +..+|.|++.+... ..+++.+..++.++..+....
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~-~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-D-AGR-QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-H-HHH-HHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred cccHHHHHHHHHHHHHHccC-H-HHH-HHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 123445778888887753 2 111 0122 25677777777641 112222334444444432100
Q ss_pred --------------------cc----------------------ccc-cchHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002921 597 --------------------GA----------------------GFT-QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (865)
Q Consensus 597 --------------------~~----------------------~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 633 (865)
+. ... -+-..+++.++..|... .+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~-------------~~ 297 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS-------------KK 297 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC-------------CC
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc-------------CC
Confidence 00 000 01233455555555532 13
Q ss_pred cchhHhhhhhhhHHHHHhhhh---h-hhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhh-HHHHHHH
Q 002921 634 KEFVVCCLDLLSGLAEGLGSG---I-ESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR-LSDFLDI 708 (865)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~---~-~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~ 708 (865)
.++++.+..+++.++..-+.. . ...+.....+|.+...+++.+.+++..|++++..++... ..... -...+|.
T Consensus 298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~ 375 (457)
T 1xm9_A 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPE 375 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHH
Confidence 456666777777776532221 1 122321247889999999999999999999999998753 22222 2357888
Q ss_pred HHHhcCCCCCC--CchhHHHHHHHHHHHHHHhccccccch-HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 709 AAKQLNTPKLK--ETVSVANNACWAIGELAVKARQEISPI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 709 l~~~l~~~~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
+.+.|...+.. ...++...++++++.++...+...... -...++.+..++.... ++.+++.+...+..+..
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~--~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTSS
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCC--cHHHHHHHHHHHHHHHc
Confidence 88888876321 123567788899999886543221111 1245777787777662 35688888888887764
No 64
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.17 E-value=1.3e-08 Score=111.05 Aligned_cols=386 Identities=14% Similarity=0.037 Sum_probs=230.1
Q ss_pred HHHHHHHHHhhhC--cchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCCh
Q 002921 371 SAAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFP 447 (865)
Q Consensus 371 a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~ 447 (865)
+...|+.+-+..+ ..+...-++.+.+++.+++ ...+..|..+|..++.+..+.-.... ...+|.++..|.++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~---~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~ 104 (584)
T 3l6x_A 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL---DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK 104 (584)
T ss_dssp ------------CCCCCCCCCCHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred hHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence 3444455544322 2445566788888898888 88999899999999865443221111 2368999999999999
Q ss_pred HHHHHHHHHHHhhHHHH-hhhhCCCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHH
Q 002921 448 LIRSISCWTLSRFSKFI-VQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (865)
Q Consensus 448 ~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l 525 (865)
.++..|+++|.+++..- ... ...-.-...++.|++.|.+ .+..+++.|+.+|.++...- +.-.......++.|
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~n----k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~L 179 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDN----KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHAL 179 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHH----HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHH----HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHH
Confidence 99999999999998521 110 0111123568889998886 57889999999999887532 11111122344555
Q ss_pred HHHhc------------------ccchhhHHHHHHHHHHHHHHhcccCCchhh--HhhhhHHHHHHHhc----CCCCCcc
Q 002921 526 MMAFG------------------KYQRRNLRIVYDAIGTLADAVGFELNQPVY--LDILMPPLIAKWQQ----LPNSDKD 581 (865)
Q Consensus 526 ~~~l~------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~l~~~l~~~l~~----~~~~~~~ 581 (865)
+.++- ..+..++..+..+|..++...... .. .. ...+++.|+..+.. ...+++.
T Consensus 180 v~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~-R~-~i~~~~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 180 TDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA-RR-KLRECDGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp HHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH-HH-HHHHSTTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred HHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH-HH-HHHHcCCcHHHHHHHHHHhhcccCccHHH
Confidence 55441 112356667788888776422110 00 01 12344555555543 1112222
Q ss_pred hhhHHHHHHHHHHHhcccc-------------------------cc-chHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 002921 582 LFPLLECFTSIAQALGAGF-------------------------TQ-FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKE 635 (865)
Q Consensus 582 ~~~~~~~l~~l~~~~~~~~-------------------------~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 635 (865)
+..++.++.+++.....+. .. +-..+++.++..|... ...+
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s-------------~~~~ 324 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES-------------KTPA 324 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC-------------CCHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC-------------CCHH
Confidence 3566677766664421110 00 1234556666666542 1346
Q ss_pred hhHhhhhhhhHHHHHh---hhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHh
Q 002921 636 FVVCCLDLLSGLAEGL---GSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQ 712 (865)
Q Consensus 636 ~~~~al~~l~~l~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~ 712 (865)
+.+.+..++..++..- ...+...+.+...+|.|...+...+..++..|+++|+.++...... ...-...+|.+...
T Consensus 325 v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~L 403 (584)
T 3l6x_A 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHH
Confidence 6777778887776431 1122223332357899999999999999999999999999865421 12235688999998
Q ss_pred cCCCCCC----CchhHHHHHHHHHHHHHHhccccccch-HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 713 LNTPKLK----ETVSVANNACWAIGELAVKARQEISPI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 713 l~~~~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
|...+.. ...++...|++++++++.......... -...++.++.++.+.. ..+.+.+.|..+++.|..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHHHHHHHHc
Confidence 8875211 024678889999999885543322222 1236778888887642 145688888888888773
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.17 E-value=7.1e-10 Score=110.63 Aligned_cols=235 Identities=15% Similarity=0.100 Sum_probs=173.8
Q ss_pred CCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCc
Q 002921 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (865)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~ 126 (865)
+..+..+...+. +.++++|..|+..|++.+...-.....-....+.+.|++.|.++++.+|..++.+++.++.....
T Consensus 11 ~~~~~~~~~~L~---s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 11 GSELPQMTQQLN---SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TCSHHHHHHHHH---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cchHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 345677788886 56789999999999888765211111112234556788889988999999999999999974311
Q ss_pred --CCh--HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHH
Q 002921 127 --AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (865)
Q Consensus 127 --~~w--~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 202 (865)
... ...++.|.+.+.++++.+|..++.+|+.++......... -.-...+|.+.+.+.++++.+|..|+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~lL~~~~~~v~~~a~~ 160 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEALW 160 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH-------HHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 111 237899999999999999999999999998765432100 012457899999999999999999999
Q ss_pred HHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHH
Q 002921 203 SVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVAL 280 (865)
Q Consensus 203 ~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~ 280 (865)
+|.++....+....... ...++.++..+.++++.++..++.+|..++...++....... ..++.+...+.+.+++++.
T Consensus 161 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence 99999875433222111 245788888888889999999999999998655554433333 4778888888888999999
Q ss_pred HHHHHHHHhhc
Q 002921 281 EACEFWHSYFE 291 (865)
Q Consensus 281 ~a~~~l~~l~~ 291 (865)
.|+.++..++.
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999887754
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.15 E-value=2.5e-09 Score=108.41 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=173.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhh
Q 002921 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (865)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 259 (865)
.-++.+.+.|.++++.+|..|+.+|+.+.. +..++.+...+.++++.+|..++.+|..+... + ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~----~~ 87 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K----KC 87 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T----TT
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c----cc
Confidence 347788899999999999999999998752 23456677778889999999999998776421 1 12
Q ss_pred HHHHHHHHhh-hcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCC
Q 002921 260 LRNLFEYMLQ-VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (865)
Q Consensus 260 l~~l~~~l~~-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~ 338 (865)
++.+++.+.. ...+.+..+|..++..+..+.... . .+.+.+++.+...+..
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~----~~~~~~~~~L~~~l~d---------------------- 139 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--P----IYSPKIVEQSQITAFD---------------------- 139 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--G----GGHHHHHHHHHHHTTC----------------------
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--C----cccHHHHHHHHHHhhC----------------------
Confidence 3445555442 456788999999999998876431 1 1223445555443332
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002921 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (865)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~ 418 (865)
.++.+|..|...++.+.. +..++.+...+.+++ +.+|..++.+|+.
T Consensus 140 ------------------------~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 140 ------------------------KSTNVRRATAFAISVIND-------KATIPLLINLLKDPN---GDVRNWAAFAINI 185 (280)
T ss_dssp ------------------------SCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSS---HHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHh
Confidence 123489999998876543 235667777788888 9999999999998
Q ss_pred HHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHH
Q 002921 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (865)
Q Consensus 419 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~ 498 (865)
+... -+.+++.+...++|+++.||..|+++|+.+.. ...++.+++.+.|++ ||..
T Consensus 186 ~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------------~~~~~~L~~~l~d~~--vr~~ 240 (280)
T 1oyz_A 186 NKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------------KRVLSVLCDELKKNT--VYDD 240 (280)
T ss_dssp HTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------------GGGHHHHHHHHTSSS--CCHH
T ss_pred hccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------------HhhHHHHHHHhcCcc--HHHH
Confidence 7422 13567788889999999999999999997752 134566777778755 8888
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-hhhHHHHHHHH
Q 002921 499 ACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-RRNLRIVYDAI 544 (865)
Q Consensus 499 a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~~~~l 544 (865)
+..+++.+-. +..++.|...+++.. ......+++++
T Consensus 241 a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 241 IIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 9888887632 234555566665433 33344444443
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=1.4e-08 Score=116.42 Aligned_cols=274 Identities=15% Similarity=0.221 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHhhch-hhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhcc
Q 002921 237 VRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (865)
Q Consensus 237 ~r~~~~~~l~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~ 315 (865)
-+..+...+..+..... ....+ ..++..+.....+.... ..|+..+..+++......-..||+-.++|.++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG 105 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence 34555666666554321 11112 24556666666665443 888888899987633334457888888888776544
Q ss_pred CChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHH
Q 002921 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ 395 (865)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~ 395 (865)
+.. -.+|.+|..+...+...++...+..++|.+.
T Consensus 106 dk~----------------------------------------------~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~ 139 (986)
T 2iw3_A 106 NKD----------------------------------------------KEIQSVASETLISIVNAVNPVAIKALLPHLT 139 (986)
T ss_dssp CSS----------------------------------------------HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred CCc----------------------------------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 211 1389999999999999999877899999999
Q ss_pred HhhccC-CCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcch
Q 002921 396 AKLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (865)
Q Consensus 396 ~~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (865)
.++.+. . |+.+.+|+.+++.+++..++.+...+++++|.+..++.|..+.|+.+|..++..++..+. .
T Consensus 140 ~~~~~~~k---w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~--------n 208 (986)
T 2iw3_A 140 NAIVETNK---WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD--------N 208 (986)
T ss_dssp HHHHHCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC--------C
T ss_pred HHhccccc---hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC--------C
Confidence 988765 6 999999999999999988999999999999999999999999999999999988887653 2
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--hccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (865)
..+...++.+++++.+|+. |.+ ++..+... ..+--.|-+.-+.|.|.+.|+.......+.+.-.+.++++-+.
T Consensus 209 ~d~~~~~~~~~~~~~~p~~-~~~----~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 209 KDIERFIPSLIQCIADPTE-VPE----TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp TTTGGGHHHHHHHHHCTTH-HHH----HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred cchhhhHHHHHHHhcChhh-hHH----HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 3345677888889998843 433 33333322 1344467888899999999988777777888888888887665
Q ss_pred ccCCchhhHhhhhHHHHHHHhcCC
Q 002921 553 FELNQPVYLDILMPPLIAKWQQLP 576 (865)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~ 576 (865)
+...-.+|++.++|.+....+..+
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFATIA 307 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTTCC
T ss_pred CHHHHhhhhhhhhhHHHHHhhccC
Confidence 432222788888888777666543
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.04 E-value=1.5e-05 Score=90.27 Aligned_cols=322 Identities=14% Similarity=0.095 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccC---CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH
Q 002921 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 485 (865)
+.+|...||.+-.+..+ ..+..+-+.+. +.++.+|..|+..+|-+..... . .++..|.
T Consensus 375 k~sA~aSLGlIh~g~~~-------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--------~----~~~~lL~ 435 (963)
T 4ady_A 375 KFTATASLGVIHKGNLL-------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--------R----DTTDYLK 435 (963)
T ss_dssp HHHHHHHHHHHTSSCTT-------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--------H----HHHHHHH
T ss_pred HHHHHHHhhhhccCchH-------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--------H----HHHHHHH
Confidence 56777777777554332 23444555554 5678999999999997654321 1 3455555
Q ss_pred HHHcCCC--------HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCc
Q 002921 486 KRILDTN--------KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (865)
Q Consensus 486 ~~l~d~~--------~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 557 (865)
..+.+++ +.+|..|+..|+-..- +..= +.+++.|...+.+.+......+.-++|.+.-..|..
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--- 506 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAM--GSAN----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--- 506 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHST--TCCC----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH---
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH---
Confidence 5565443 6789999999885432 2111 234445555555444333445566666554333322
Q ss_pred hhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchh
Q 002921 558 PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (865)
Q Consensus 558 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (865)
..+..++..+. ... .+.....+..+++.+ .+|.. ...+.+ ++.|... +++.++
T Consensus 507 -~ai~~LL~~~~----e~~-~e~vrR~aalgLGll--~~g~~--e~~~~l----i~~L~~~-------------~dp~vR 559 (963)
T 4ady_A 507 -EAIHDMFTYSQ----ETQ-HGNITRGLAVGLALI--NYGRQ--ELADDL----ITKMLAS-------------DESLLR 559 (963)
T ss_dssp -HHHHHHHHHHH----HCS-CHHHHHHHHHHHHHH--TTTCG--GGGHHH----HHHHHHC-------------SCHHHH
T ss_pred -HHHHHHHHHHh----ccC-cHHHHHHHHHHHHhh--hCCCh--HHHHHH----HHHHHhC-------------CCHHHH
Confidence 45555554433 211 221112333333333 22221 223333 3334421 244555
Q ss_pred HhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCC
Q 002921 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK 717 (865)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (865)
-++.-+++.-..+.|.. . .+-.+|..+.++.+..||+.|+-.||-+...-.+ .++.+...+....
T Consensus 560 ygaa~alglAyaGTGn~--~-----aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~ 624 (963)
T 4ady_A 560 YGGAFTIALAYAGTGNN--S-----AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSH 624 (963)
T ss_dssp HHHHHHHHHHTTTSCCH--H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCS
T ss_pred HHHHHHHHHHhcCCCCH--H-----HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcC
Confidence 54444443333333331 1 1333556666788899999999999977654321 1223333333222
Q ss_pred CCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHH
Q 002921 718 LKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQP 797 (865)
Q Consensus 718 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 797 (865)
++.+|..|+.++|.+.-..+. ..++..|.++..++ ...++.+|+.++|.+...+.+...|.+.+++..
T Consensus 625 ---d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~---d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 625 ---NAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDP---VDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp ---CHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCC---CHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 789999999999998743331 34466777777777 367999999999999988877777889999999
Q ss_pred HHHHhccCC-ChHHHH
Q 002921 798 WCIALSMIR-DDTEKE 812 (865)
Q Consensus 798 ~~~~l~~~~-~~~~~~ 812 (865)
+.+...++. |...+-
T Consensus 693 L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 693 FLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHCSSSCHHHHH
T ss_pred HHHHHhcccccHHHHH
Confidence 888887643 433333
No 69
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.04 E-value=4.1e-06 Score=101.88 Aligned_cols=535 Identities=10% Similarity=0.015 Sum_probs=276.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
+...|+.+-+.+..+-+. ++.|..+...|. -.+.++.+|..|+.+|...+...-..+.. .....+-..+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~-------e~k~~Ir~~l 94 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSR-------LEKVYLKNSV 94 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCH-------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC--chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCH-------HHHHHHHHHH
Confidence 667899888888776543 357877766664 24557899999999998877653332221 1123333444
Q ss_pred HHHhcC-------CCHHHHHHHHHHHHHHhccc-cHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchh---
Q 002921 186 LQFFQS-------PHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--- 254 (865)
Q Consensus 186 ~~~l~~-------~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--- 254 (865)
++.+.. .+..+|.....++..++... | ...+.+++.+++.++. +...+..++.+|..+.+....
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 444431 46889999999999988652 2 1234456666665544 345566778888777653111
Q ss_pred -----------hhhhhHHHHHHHHhhhcCC-------------------CCHHHHHHHHHHHHHhhccCCchhhHHhhhh
Q 002921 255 -----------FLEPHLRNLFEYMLQVNKD-------------------TDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (865)
Q Consensus 255 -----------~~~~~l~~l~~~l~~~~~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 304 (865)
.+...++.+++.+.+.+.+ .+.+++..+++++..+.+- .....+...-.
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W-i~~~~i~~~~~ 248 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW-VSMSHITAENC 248 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT-SCHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc-cCHHHHHhccc
Confidence 1233344555554444321 1223455556655544331 01111111111
Q ss_pred hHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc
Q 002921 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (865)
Q Consensus 305 ~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~ 384 (865)
.+++.++..+.. -.+|..|.+||..+.....+
T Consensus 249 ~ll~~l~~~l~~------------------------------------------------~~lr~~A~ecL~~i~s~~~~ 280 (1204)
T 3a6p_A 249 KLLEILCLLLNE------------------------------------------------QELQLGAAECLLIAVSRKGK 280 (1204)
T ss_dssp HHHHHHHHGGGC------------------------------------------------TTTHHHHHHHHHHHHTCCSC
T ss_pred hHHHHHHHHcCC------------------------------------------------HHHHHHHHHHHHHHHhCCCC
Confidence 244444332211 02688999999999876532
Q ss_pred -----chhhhh----HHHHHHhhc--cC---CCcchhHHHHHHHHHHHHHhchhh--------hhhccHHHHHHHHHhcc
Q 002921 385 -----EILPTL----MPVIQAKLS--AS---GDEAWKDREAAVLALGAIAEGCIK--------GLYPHLSEIVAFLIPLL 442 (865)
Q Consensus 385 -----~~~~~~----~~~l~~~l~--~~---~~~~~~~r~~a~~~l~~l~~~~~~--------~~~~~l~~i~~~l~~~l 442 (865)
.++..+ +..+.+... +. ++.....++.-...+..+++.... ...+.+..+++.++.++
T Consensus 281 ~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t 360 (1204)
T 3a6p_A 281 LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFT 360 (1204)
T ss_dssp HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHH
Confidence 122222 112222221 11 111133333444444444332221 23467888999999999
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHH---HHHHcCC---C---------------------HHH
Q 002921 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL---LKRILDT---N---------------------KRV 495 (865)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~d~---~---------------------~~v 495 (865)
.+++..+...++.....+.+..... ......+++..+++.+ +..+.-+ + ...
T Consensus 361 ~~~~~~vs~~~l~fW~~ll~~~~~~-~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~ 439 (1204)
T 3a6p_A 361 THPSQFLRSSTQMTWGALFRHEILS-RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSS 439 (1204)
T ss_dssp TSSCHHHHHHHHHHHHHHHSCTTTT-TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHH
T ss_pred hCccHHhHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHH
Confidence 9998888877766554444332100 0011234555555555 2222111 0 123
Q ss_pred HHHHHHHHHHHHHHhccchhhhHHHHH-HHHHHHhccc-------------------ch--hhHHHHHHHHHHHHHHhcc
Q 002921 496 QEAACSAFATLEEEAAEELAPRLEIIL-QHLMMAFGKY-------------------QR--RNLRIVYDAIGTLADAVGF 553 (865)
Q Consensus 496 r~~a~~al~~l~~~~~~~~~~~~~~i~-~~l~~~l~~~-------------------~~--~~~~~~~~~l~~l~~~~~~ 553 (865)
|......+..++...+....+++.+.+ ..+...+++. .. ........++..++..+..
T Consensus 440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~ 519 (1204)
T 3a6p_A 440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR 519 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555554433333332322222 1111111111 00 1112223333333333311
Q ss_pred cCCchhhHh-hhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002921 554 ELNQPVYLD-ILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ 631 (865)
Q Consensus 554 ~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~ 631 (865)
.... +++. .+++.+++.+-....+++.+ ...+.|++.+...+.. -..|++.+++.++..+.... ++.....
T Consensus 520 ~~e~-~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~-----~~~~~~~ 592 (1204)
T 3a6p_A 520 TLNR-EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFET-----VEESKAP 592 (1204)
T ss_dssp HSCT-TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCT-----TCSTTSC
T ss_pred cccc-ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCC-----ccccccc
Confidence 0000 1222 35666666654433245555 5677888877765543 24578888888877665310 0000000
Q ss_pred ---CCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhch--hhhHhhHH
Q 002921 632 ---YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA---SDVRQSAFALLGDLARVCP--VHLQARLS 703 (865)
Q Consensus 632 ---~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~vr~~a~~~l~~l~~~~~--~~~~~~~~ 703 (865)
...+++..|..++..++..++..+.+|+++ +...+...+.... ..-+..-..+++.++...+ .....|+.
T Consensus 593 ~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~--i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~ 670 (1204)
T 3a6p_A 593 RTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDM--LYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHH--HHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 123677788899999999999999999987 8877777665322 3344444455555554422 34456688
Q ss_pred HHHHHHHHhcCC
Q 002921 704 DFLDIAAKQLNT 715 (865)
Q Consensus 704 ~~l~~l~~~l~~ 715 (865)
.+++.+...+.+
T Consensus 671 ~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 671 ELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHcc
Confidence 888888877765
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.04 E-value=7e-07 Score=102.50 Aligned_cols=340 Identities=13% Similarity=0.145 Sum_probs=234.0
Q ss_pred HhhhhhCCChhHHHHHHHHHHHHHHhc---CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCC
Q 002921 98 LLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (865)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (865)
+++.+...+..-++.++..++.+.... ..-.| .++..+...+.+.... ++|+.++..+++..+..-. +
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~------~ 89 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS------V 89 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT------T
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC------c
Confidence 555565444555666777777777643 12245 7888888888775433 8999999999987654211 1
Q ss_pred CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhch
Q 002921 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~ 253 (865)
+.++-.++|.++..+.|....||.+|-.+...++..+++.-. ..+++.++..+.+. .++.+..++.++..+++..+
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 456667789999999999999999999999999987765432 44566666665433 58999999999999999989
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCC
Q 002921 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (865)
Q Consensus 254 ~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~ 333 (865)
+.+...+++++|.+...++|..++|...|...+..+|.. .....+.|+++.++..+ ...++
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~~~~~~~~~~~~----~~p~~-------------- 227 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDIERFIPSLIQCI----ADPTE-------------- 227 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTTGGGHHHHHHHH----HCTTH--------------
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcchhhhHHHHHHHh----cChhh--------------
Confidence 999999999999999999999999999999999988875 23455667776666554 32211
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh-----CcchhhhhHHHHHHhhccCCCcchhH
Q 002921 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GDEILPTLMPVIQAKLSASGDEAWKD 408 (865)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~ 408 (865)
.-+++..|+... ....+..+.|.+...++... -..
T Consensus 228 -------------------------------------~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~---~~~ 267 (986)
T 2iw3_A 228 -------------------------------------VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE---TGI 267 (986)
T ss_dssp -------------------------------------HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS---HHH
T ss_pred -------------------------------------hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc---chh
Confidence 233444444332 23456678899999998776 666
Q ss_pred HHHHHHHHHHHHhchh--hhhhccHHHHHHHHHhccC-CCChHHHHHHHHHHHhhHHHHhh-hhC---CCcchhhHHHHH
Q 002921 409 REAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQ-DIG---HQNGREQFEKVL 481 (865)
Q Consensus 409 r~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~---~~~~~~~~~~~~ 481 (865)
+.-+...+..++.-.. ....++++.++|.+-+... -.+|.+|..|-.++..+.+.... ... ..........+.
T Consensus 268 ~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (986)
T 2iw3_A 268 KRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTL 347 (986)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHH
T ss_pred heeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHH
Confidence 6777777888877544 3457888888888877553 36789999888888777665332 100 001122345555
Q ss_pred HHHHHHHcCCC-----HHHHHHHHHHHHHHHH
Q 002921 482 MGLLKRILDTN-----KRVQEAACSAFATLEE 508 (865)
Q Consensus 482 ~~l~~~l~d~~-----~~vr~~a~~al~~l~~ 508 (865)
..+.+.+...+ ..+..+++.....++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 379 (986)
T 2iw3_A 348 QVVNELLKDETVAPRFKIVVEYIAAIGADLID 379 (986)
T ss_dssp HHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHHHHHHHHHhh
Confidence 55655555421 3345555555555544
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.01 E-value=6.4e-08 Score=103.11 Aligned_cols=352 Identities=12% Similarity=0.086 Sum_probs=204.8
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCC------------CHHHHHH
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------------HTSLRKL 199 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------------~~~vr~~ 199 (865)
.++.+...+.+.++.. .++.|..+....+.... ..-...+|.++++|+.. ++++|..
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~--------~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCIS--------MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSSTTHHHH--------HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHH--------HHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 3555666666665552 44455555544432000 01266788999999863 3799999
Q ss_pred HHHHHHHHhccccHHhHH-----------hHHHHHHHHHHhhCCCC--HH-----HHH-------HHHHHHHHHHhhchh
Q 002921 200 SLGSVNQFIMLMPSALFV-----------SMDQYLQGLFLLSNDPS--AE-----VRK-------LVCAAFNLLIEVRPS 254 (865)
Q Consensus 200 a~~~l~~~~~~~~~~~~~-----------~~~~~l~~l~~~~~~~~--~~-----~r~-------~~~~~l~~l~~~~~~ 254 (865)
|..+|.+++..-|+.... .+..+.+.+++.+..++ .+ ++. +|..+|..++.. +
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~- 179 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-E- 179 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-H-
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-H-
Confidence 999999999866543221 12223344444443321 11 333 566777766432 2
Q ss_pred hhhhhHH--HHHHHHhhhcC-----------CCCHHHHHHHHHHHHHhhccCCchhhHHhh---hhhHHHHHHhhccCCh
Q 002921 255 FLEPHLR--NLFEYMLQVNK-----------DTDDDVALEACEFWHSYFEAQLPHENLKEF---LPRLVPVLLSNMIYAD 318 (865)
Q Consensus 255 ~~~~~l~--~l~~~l~~~~~-----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~~ll~~l~~~~ 318 (865)
..+..+- ..++.++..+. +.+..++..|..++..++.... ..+.. ....+|.++..+...+
T Consensus 180 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~---~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV---ANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc---ccHHHHHHcCCcHHHHHHHHhCCC
Confidence 2222221 12223332221 1235678889999998886521 11222 2455777777665322
Q ss_pred hhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhC----cchh-hhhHHH
Q 002921 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG----DEIL-PTLMPV 393 (865)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~----~~~~-~~~~~~ 393 (865)
+ .++..|..+|..|+..-. ..+. .-.+|.
T Consensus 257 ~----------------------------------------------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 257 E----------------------------------------------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp H----------------------------------------------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred H----------------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 1 267778888888875311 1222 234667
Q ss_pred HHHhh-ccCCCcchhHHHHHHHHHHHHHhchhhhhhccH--HHHHHHHHhccCCCCh----HHHHHHHHHHHhhHHHHhh
Q 002921 394 IQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFP----LIRSISCWTLSRFSKFIVQ 466 (865)
Q Consensus 394 l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~~ 466 (865)
+.+.+ .+.+ ...++.++.++..++.++.+.-.... ...++.++..+.+++. .++..|+++|.+++.++..
T Consensus 291 LV~lLl~s~~---~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 291 LMECALEVKK---ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHTTCCS---HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC---HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 77754 4556 88999999999999875543211221 3478888888876654 4899999999999874221
Q ss_pred hhCCCcchhh--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHhcccchhhHHHHHHH
Q 002921 467 DIGHQNGREQ--FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDA 543 (865)
Q Consensus 467 ~~~~~~~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (865)
. ...... -...++.++..+.+++..+++.|+++|.+++....+...... ...++.|+.++...+...+..+..+
T Consensus 368 ~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 368 N---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp C---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred C---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 0 011111 134688899999999999999999999999843222222122 3568888889988777888899999
Q ss_pred HHHHHHHh
Q 002921 544 IGTLADAV 551 (865)
Q Consensus 544 l~~l~~~~ 551 (865)
+..++..-
T Consensus 445 L~nL~~~~ 452 (458)
T 3nmz_A 445 LRNLMANR 452 (458)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99888653
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.2e-06 Score=94.93 Aligned_cols=373 Identities=12% Similarity=0.109 Sum_probs=236.9
Q ss_pred CCHhHHHHHHHHHhhhhhC--CChhHHHHHHHHHHHHHHhc--CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhh
Q 002921 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~ 161 (865)
+...-|+.|.+..++.|.+ .+..+|..++.++..+.... ......++.+.+.+.+.+++...|+.|+..|.++...
T Consensus 285 i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4455566666655555532 24688999999999988764 2345678999999999988777799999999998754
Q ss_pred c--hhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhccccH------H---h---H----H-----
Q 002921 162 I--PQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPS------A---L---F----V----- 217 (865)
Q Consensus 162 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~------~---~---~----~----- 217 (865)
- .+.+..+ ..+++.+++.+.+ .+..+...++.++.++..+.+. . + . +
T Consensus 365 ~~VKe~L~~d---------~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~ 435 (778)
T 3opb_A 365 ASVKIMIRSN---------ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKV 435 (778)
T ss_dssp SHHHHHHHHC---------HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------C
T ss_pred HHHHHHHHhC---------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcc
Confidence 3 2333332 6678888889885 6677889999999999875431 0 0 0 0
Q ss_pred --------hH----------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhH-HHHHHHHhhhcCCCCH--
Q 002921 218 --------SM----------DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDD-- 276 (865)
Q Consensus 218 --------~~----------~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~-- 276 (865)
++ ..+++.+...+.++++.+|..+..+|..++.. ++.-...+ ...++.++..+.+...
T Consensus 436 d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~ 514 (778)
T 3opb_A 436 GAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIG 514 (778)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---C
T ss_pred cccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcc
Confidence 00 02467777777778899999999999999864 22111111 1334455555544332
Q ss_pred -HHHHHHHHHHHHhhccCCchhhHHhh-hhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCC
Q 002921 277 -DVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (865)
Q Consensus 277 -~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 354 (865)
..+..|..++..+.........+..+ ....++-++..+....+. . + . +.+
T Consensus 515 ~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~-~------------~-~---~l~----------- 566 (778)
T 3opb_A 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPV-D------------D-N---PLH----------- 566 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSC-S------------S-C---C-------------
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCc-c------------c-c---ccc-----------
Confidence 37888888888876431111111111 014556666555421000 0 0 0 000
Q ss_pred CCCCccccccccHHHHHHHHHHHHHhhhC-------cchhh--hhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh
Q 002921 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFG-------DEILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (865)
Q Consensus 355 ~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-------~~~~~--~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 425 (865)
+ + +. ..-..+..|..+|..|+..-+ ..++. ..++.+..++.+++ ...|.+|+.+++.++....
T Consensus 567 ~-~--~~-~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n---~~VrrAA~elI~NL~~~~e- 638 (778)
T 3opb_A 567 N-D--EQ-IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN---VPLQRSTLELISNMMSHPL- 638 (778)
T ss_dssp --C--CC-CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHTSGG-
T ss_pred c-c--cc-ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC---HHHHHHHHHHHHHHhCCcH-
Confidence 0 0 00 000125678888888887642 12443 37888999998887 8999999999999997433
Q ss_pred hh-hccH----HH---HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhh--HHHHHHHHHHHHcC--CCH
Q 002921 426 GL-YPHL----SE---IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ--FEKVLMGLLKRILD--TNK 493 (865)
Q Consensus 426 ~~-~~~l----~~---i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~d--~~~ 493 (865)
.+ ..++ +. -++.++..+...+..+|.+|++++..++...+.. .... ....+..++..+.+ ++.
T Consensus 639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----a~~ll~~~~gi~~Ll~lL~~~~~~~ 713 (778)
T 3opb_A 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----AKELLTKKELIENAIQVFADQIDDI 713 (778)
T ss_dssp GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----HHHHTTCHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----HHHHHHccccHHHHHHHHhccCCCH
Confidence 22 1121 12 3777888898999999999999999986543321 0111 13566777777777 789
Q ss_pred HHHHHHHHHHHHHHHH
Q 002921 494 RVQEAACSAFATLEEE 509 (865)
Q Consensus 494 ~vr~~a~~al~~l~~~ 509 (865)
.+|.+++.++.++++.
T Consensus 714 ~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 714 ELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999973
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.00 E-value=5.9e-07 Score=95.71 Aligned_cols=352 Identities=13% Similarity=0.052 Sum_probs=198.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC---------CcHHHHHHhhhcccC---------CCHHHHHHHHHHH
Q 002921 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP---------DFNNYLAFILARAEG---------KSVEIRQAAGLLL 75 (865)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p---------~~~~~l~~il~~~~~---------~~~~~R~~a~~~L 75 (865)
++.+..++.++.+.|.. .....|..+.++| |.++.|.+++..... .+++.|.-|+-.|
T Consensus 31 ~~~~~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 31 VEMVYSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp --------------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 34555666666666654 2555666776655 456788888874211 4489999999999
Q ss_pred HHHHHhhhCcCCHhHHHHHH----------HHHhhhhhCCC-------hhHHH-------HHHHHHHHHHHhc-CcCCh-
Q 002921 76 KNNLRTAYKSMSPSNQQYIK----------SELLPCLGAAD-------RHIRS-------TVGTIVSVVVQLG-GIAGW- 129 (865)
Q Consensus 76 ~~~i~~~w~~~~~~~~~~i~----------~~ll~~l~~~~-------~~vr~-------~~a~~l~~i~~~~-~~~~w- 129 (865)
.|.+...-+.........+. ..+++.+.++. ..+|. +++.++++++... .....
T Consensus 107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~ 186 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN 186 (458)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99997754432211111111 22344454321 11444 5666666664332 11111
Q ss_pred -HHHHHHHHHhhcc-----------CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHH
Q 002921 130 -LELLQALVTCLDS-----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLR 197 (865)
Q Consensus 130 -~~ll~~l~~~l~~-----------~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr 197 (865)
...++.|...+.. .++..+..|..+|..++..-...-.. + ......+|.+++.|.+++++++
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~-i-----~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-L-----CSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-H-----HHCHHHHHHHHHGGGCSCHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHH-H-----HHcCCcHHHHHHHHhCCCHHHH
Confidence 1234555555531 23567889999999998754321100 0 0025679999999999999999
Q ss_pred HHHHHHHHHHhccccHHhHHhH--HHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhchhhhhhhH--HHHHHHHhhhcC
Q 002921 198 KLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNK 272 (865)
Q Consensus 198 ~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l--~~l~~~l~~~~~ 272 (865)
..|+.+|.++.....+.....+ ...++.|+.+ ...++..+++.++.+|..++....+.-.... ...++.++..+.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999764222222222 1346777775 4556788888899999888864332111110 123333333333
Q ss_pred CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCC
Q 002921 273 DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSE 352 (865)
Q Consensus 273 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 352 (865)
+.++.
T Consensus 341 ~~~~~--------------------------------------------------------------------------- 345 (458)
T 3nmz_A 341 YRSQT--------------------------------------------------------------------------- 345 (458)
T ss_dssp CCCSS---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 22110
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHhhh--Ccc----hh-hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh
Q 002921 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDE----IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (865)
Q Consensus 353 ~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--~~~----~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 425 (865)
....++..|..+|..++... +++ +. ...++.+.+.+.+++ ...++.|+.+|+.++.+..+
T Consensus 346 ----------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~---~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 346 ----------NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp ----------STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC---HHHHHHHHHHHHHHHSSCHH
T ss_pred ----------chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCHH
Confidence 00012333444444443310 110 01 134667777888887 89999999999999865554
Q ss_pred hhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 426 GLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 426 ~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
....... ..++.++..+.++++.+|..|+++|.+++..
T Consensus 413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3332332 3789999999999999999999999998864
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.96 E-value=8.2e-05 Score=84.45 Aligned_cols=333 Identities=13% Similarity=0.093 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhhhCcchhhhhHHHHHHhhc---cCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC
Q 002921 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (865)
+..|...++.+.....++. +..+..++. +++ ...|.+|++++|.+..+..+. ++..+...+.+
T Consensus 375 k~sA~aSLGlIh~g~~~~g----l~~L~~yL~~~~s~~---~~ik~GAllaLGli~ag~~~~-------~~~lL~~~L~~ 440 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEG----KKVMAPYLPGSRASS---RFIKGGSLYGLGLIYAGFGRD-------TTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTH----HHHHTTTSTTSCCSC---HHHHHHHHHHHHHHTTTTTHH-------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCchHHH----HHHHHHhccccCCCc---HHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHcC
Confidence 5566667766655444433 445555565 445 889999999999998876642 33444444444
Q ss_pred CC--------hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhh
Q 002921 445 KF--------PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (865)
Q Consensus 445 ~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (865)
++ +.+|..|+..||...-.. .. +.+++.|.+.+.+.+..++..|+.+++.+.- +..-..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS-------~~----eev~e~L~~~L~dd~~~~~~~AalALGli~v--GTgn~~ 507 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGS-------AN----IEVYEALKEVLYNDSATSGEAAALGMGLCML--GTGKPE 507 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTC-------CC----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCCCHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCC-------CC----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--ccCCHH
Confidence 33 789999998888643211 11 3566677777777777788888888886532 222222
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHh
Q 002921 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQAL 596 (865)
Q Consensus 517 ~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~ 596 (865)
.+..++..+. .+.+.++++.+..+|+.+. .|.. ...+ .+++.+... .++.+ +-..++..-+...
T Consensus 508 ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~----e~~~----~li~~L~~~--~dp~v-Rygaa~alglAya 571 (963)
T 4ady_A 508 AIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQ----ELAD----DLITKMLAS--DESLL-RYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCG----GGGH----HHHHHHHHC--SCHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCCh----HHHH----HHHHHHHhC--CCHHH-HHHHHHHHHHHhc
Confidence 3344444433 2345567777777776553 3332 3333 344444432 23322 1111222222334
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCC
Q 002921 597 GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA 676 (865)
Q Consensus 597 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 676 (865)
|.+- ...++.++..+.+. .+.+++..|...++-+.- |+. + .+..++....++.+
T Consensus 572 GTGn----~~aIq~LL~~~~~d-------------~~d~VRraAViaLGlI~~--g~~------e-~v~rlv~~L~~~~d 625 (963)
T 4ady_A 572 GTGN----NSAVKRLLHVAVSD-------------SNDDVRRAAVIALGFVLL--RDY------T-TVPRIVQLLSKSHN 625 (963)
T ss_dssp TSCC----HHHHHHHHHHHHHC-------------SCHHHHHHHHHHHHHHTS--SSC------S-SHHHHTTTGGGCSC
T ss_pred CCCC----HHHHHHHHHHhccC-------------CcHHHHHHHHHHHHhhcc--CCH------H-HHHHHHHHHHhcCC
Confidence 4432 23344444443321 133566666555554432 221 1 12233333445788
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 002921 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (865)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~ 756 (865)
+.+|..|..++|.+....+. ..++..+.+...+. +..||.+|+.++|.+.....+...|.+.+++..+..
T Consensus 626 ~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~----d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDP----VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCC----CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 99999999999998866542 34555555556666 789999999999999887777777889999999888
Q ss_pred HhcCchhhhhhHHHHHHHHHHhhh
Q 002921 757 ILKHSEELNKSLIENSAITLGRLA 780 (865)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~ 780 (865)
.+.+... ....+-.+..+.|-+-
T Consensus 696 ~~~dk~~-d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 696 VITNKHQ-EGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHCSSS-CHHHHHHHHHHHHHHT
T ss_pred HHhcccc-cHHHHHHHHHHHHHHh
Confidence 8875321 1234444444555444
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.95 E-value=2.8e-08 Score=95.72 Aligned_cols=193 Identities=17% Similarity=0.128 Sum_probs=146.1
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcC--Ch--HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
......+..+|.++++.+|..++.+++.++...... .. ...++.|.+.+.++++.+|..|+.+|+.++........
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 344567788889999999999999999999653211 11 14689999999999999999999999999865433211
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~ 246 (865)
. -.-...+|.+++.++++++.+|..|+.++.++....+......+ ...++.++..+.+++..++..++.+|.
T Consensus 91 ~-------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 91 A-------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp H-------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H-------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 01145789999999999999999999999999875443322222 246788888888889999999999999
Q ss_pred HHHhhchhhhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhc
Q 002921 247 LLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (865)
Q Consensus 247 ~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~ 291 (865)
.++...++....... ..++.+...+.+.+.+++..|..++..+++
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999765544322222 567788888888999999999999988764
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.93 E-value=7.8e-07 Score=77.09 Aligned_cols=215 Identities=20% Similarity=0.295 Sum_probs=160.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhH
Q 002921 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (865)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (865)
..++..++..++|.-+.+++.++..+..+++.+++...+.+..++-.+- ++..-..-...-..++.++.. .++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i--~Pe~- 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE--KPEL- 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHH--CHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHh--CHHH-
Confidence 4578888888988889999999999999999999998888877765432 233333333444556666554 3333
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
+..++|.++.....+++ +.|.--...|+.++
T Consensus 105 ---v~~vVp~lfanyrigd~----------------------------------------------kikIn~~yaLeeIa 135 (253)
T 2db0_A 105 ---VKSMIPVLFANYRIGDE----------------------------------------------KTKINVSYALEEIA 135 (253)
T ss_dssp ---HHHHHHHHHHHSCCCSH----------------------------------------------HHHHHHHHHHHHHH
T ss_pred ---HHhhHHHHHHHHhcCCc----------------------------------------------cceecHHHHHHHHH
Confidence 34556666544443321 35666778888888
Q ss_pred hhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHh
Q 002921 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (865)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (865)
...|. ..+.++.-+..++.+++ -..|.+++..++.+.++..+.+.|+++ .++..+.|.+..||..|..+++.
T Consensus 136 ranP~-l~~~v~rdi~smltskd---~~Dkl~aLnFi~alGen~~~yv~PfLp----rL~aLL~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 136 KANPM-LMASIVRDFMSMLSSKN---REDKLTALNFIEAMGENSFKYVNPFLP----RIINLLHDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHCHH-HHHHHHHHHHHHTSCSS---HHHHHHHHHHHHTCCTTTHHHHGGGHH----HHHGGGGCSSHHHHHHHHHHHHH
T ss_pred HhChH-HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhccCccccCcchH----HHHHHHcCcchhhhHHHHHHHHH
Confidence 87765 34556666677788888 889999999999999988887777765 55678999999999999999999
Q ss_pred hHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
++.. .+.+..++..-++-++|++.-|+...-.+++.++
T Consensus 208 lA~~----------npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 208 LATL----------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHTS----------CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHc----------CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 8874 2337788888889999999999888888888765
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.92 E-value=5.6e-08 Score=92.74 Aligned_cols=184 Identities=21% Similarity=0.180 Sum_probs=134.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhH
Q 002921 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (865)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (865)
+...+.++..+.++++.+|..++..|..+... ..++.++..+.+.++.+|..++..+..+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 34466778888999999999999999865431 2334455566788999999999988876432
Q ss_pred HhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002921 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (865)
Q Consensus 300 ~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (865)
..++.+...+.. .++.+|..|...|+.+.
T Consensus 76 -----~~~~~L~~~l~d----------------------------------------------~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 76 -----RAVEPLIKALKD----------------------------------------------EDGWVRQSAAVALGQIG 104 (201)
T ss_dssp -----GGHHHHHHHTTC----------------------------------------------SSHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHcC----------------------------------------------CCHHHHHHHHHHHHHhC
Confidence 122333332221 11348999999987754
Q ss_pred hhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHh
Q 002921 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (865)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (865)
. +..++.+...+.+++ +.+|..++.+++.+.. +..++.+...++|+++.||..|+++|+.
T Consensus 105 ~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 105 D-------ERAVEPLIKALKDED---WFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp C-------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred c-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3 235666777788888 9999999999999853 2346677888899999999999999998
Q ss_pred hHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 002921 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (865)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l 506 (865)
+.. +..++.+...++|+++.||..|..+|..+
T Consensus 165 ~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 165 IGG---------------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred hCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 732 24566777778889999999999998865
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.92 E-value=5.2e-08 Score=93.86 Aligned_cols=189 Identities=18% Similarity=0.143 Sum_probs=137.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 258 (865)
+..++.+.+.|.++++.+|..|+.+|+.+... ..++.+...+.++++.+|..++.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 66788999999999999999999999987541 225566677788899999999999887642
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCC
Q 002921 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (865)
Q Consensus 259 ~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~ 338 (865)
+..++.+...+.+.++.+|..++..+..+... ..++.+...+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d---------------------- 123 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKD---------------------- 123 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTC----------------------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhC----------------------
Confidence 12334455567889999999999998877432 122333332221
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002921 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (865)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~ 418 (865)
.++.+|..|...|+.+.. +..++.+...+++++ +.+|..++.+|+.
T Consensus 124 ------------------------~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 124 ------------------------EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDED---GWVRQSAADALGE 169 (211)
T ss_dssp ------------------------SSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS---HHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 123589999999987642 245667777888888 9999999999999
Q ss_pred HHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 419 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
+.. +..++.+...++|+++.||.+|..+|+.+.....
T Consensus 170 ~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 170 IGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred hCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 853 4567777788889999999999999998887643
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.90 E-value=3.1e-08 Score=95.47 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=142.4
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHh
Q 002921 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (865)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~ 89 (865)
++..++.+... +.+++.. +|..|-..|.++.. ++.+..|...+. +.++.+|..|+..|.+.- ++
T Consensus 17 ~~~~~~~L~~~---L~~~~~~-vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~-------~~- 80 (211)
T 3ltm_A 17 DPEKVEMYIKN---LQDDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DE- 80 (211)
T ss_dssp CGGGHHHHHHH---TTCSSHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHC-------CG-
T ss_pred CHhHHHHHHHH---HcCCCHH-HHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CH-
Confidence 44445555544 4578888 99999999988764 577888888886 468999999998885431 12
Q ss_pred HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccC
Q 002921 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (865)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~ 169 (865)
.....+...|.++++.+|..++.+++.+.. ++.++.|.+.+.++++.+|..++.+|+.+..
T Consensus 81 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 141 (211)
T 3ltm_A 81 ---RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 141 (211)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------
Confidence 233566778899999999999999987743 3567788888899999999999999987622
Q ss_pred CCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002921 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (865)
Q Consensus 170 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 249 (865)
+..++.+.+.++|+++.||..|+.+|+.+.. +..++.+...+.++++.+|..+..+|..+.
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3467888899999999999999999998843 233555556666788999999999998876
Q ss_pred hhch
Q 002921 250 EVRP 253 (865)
Q Consensus 250 ~~~~ 253 (865)
...+
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6443
No 80
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.89 E-value=1.2e-07 Score=91.27 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=136.3
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 002921 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
+...+.+..+++++++.+|..|+.+|..+....++...... ...++.+...+.++++.++..++.+|..++...++...
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56688899999999999999999999999865433222211 14678888888888999999999999999865444322
Q ss_pred hhH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCcc
Q 002921 258 PHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (865)
Q Consensus 258 ~~l-~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~ 336 (865)
..+ ...++.++..+++.++.++..|+.++..++.. ......
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~------------------------------------ 132 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQ------------------------------------ 132 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHH------------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--CHHHHH------------------------------------
Confidence 222 23566666777777788888887777766543 110000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHH
Q 002921 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (865)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l 416 (865)
.. .-...++.+.+.+++++ ...|..++.+|
T Consensus 133 ------------------------------------~~-----------~~~~~i~~L~~ll~~~~---~~v~~~a~~aL 162 (210)
T 4db6_A 133 ------------------------------------AV-----------IDAGALPALVQLLSSPN---EQILQEALWAL 162 (210)
T ss_dssp ------------------------------------HH-----------HHTTHHHHHHHHTTCSC---HHHHHHHHHHH
T ss_pred ------------------------------------HH-----------HHcCcHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 00 00134556666677777 88999999999
Q ss_pred HHHHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHH
Q 002921 417 GAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (865)
Q Consensus 417 ~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (865)
+.++....+....... ..++.+...+.++++.+|..|+++|++++.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9998764433222222 378889999999999999999999998763
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.85 E-value=1e-07 Score=90.89 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHH
Q 002921 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (865)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~ 95 (865)
....++..+.+++.. +|..|-..|..+.. ++.+..|...+. +.++.+|..|+..|.+.- .+ ...
T Consensus 15 ~~~~~i~~L~~~~~~-vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~-------~~----~~~ 78 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DE----RAV 78 (201)
T ss_dssp HHHHHHHHTTCSCHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------CG----GGH
T ss_pred chHHHHHHhcCCCHH-HHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CH----HHH
Confidence 344555566678888 99999999988764 467788888885 568899999998875431 12 233
Q ss_pred HHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCC
Q 002921 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (865)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (865)
..+...|.++++.+|..++.+++.+.. ++.++.|.+.+.++++.+|..++.+|+.+..
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------- 136 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------- 136 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------
Confidence 566778889999999999999988643 3467778888899999999999999987632
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002921 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (865)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 248 (865)
+..++.+...+.|+++.||..|+.+|+.+.. +..++.+...+.++++.+|..+..+|..+
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3567888999999999999999999998832 22345555566778899999999888764
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.84 E-value=2.8e-06 Score=73.70 Aligned_cols=215 Identities=13% Similarity=0.075 Sum_probs=167.8
Q ss_pred cCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhh-CCChhHHHHHHHHHHHHHHh
Q 002921 45 QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQL 123 (865)
Q Consensus 45 ~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~ 123 (865)
-+.+++..++..|- +.-..+|..|...+...... -++..+.++..|+-.++ +..-.....++.++|.+++.
T Consensus 29 ~d~~~l~~lI~~LD---DDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 29 YDESVLKKLIELLD---DDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp HCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---cHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh
Confidence 35667777888774 34567888888877555443 35567778888888875 66777888899999999987
Q ss_pred cCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHH
Q 002921 124 GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (865)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~ 203 (865)
- |+....++|.++....-+++..|.+.-.+|..+....+..+ +.++..+...+++++..-|..|+..
T Consensus 101 ~-Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~------------~~v~rdi~smltskd~~Dkl~aLnF 167 (253)
T 2db0_A 101 K-PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM------------ASIVRDFMSMLSSKNREDKLTALNF 167 (253)
T ss_dssp C-HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH------------HHHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred C-HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH------------HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5 45566788888888888899999999999999999877643 7788888999999998889999888
Q ss_pred HHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHH
Q 002921 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (865)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~ 283 (865)
++.+.+. -..+...+++.++.++.|.++-+|..+.++|..++...++ +..++...+.-++|.++.+....-
T Consensus 168 i~alGen----~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~ 238 (253)
T 2db0_A 168 IEAMGEN----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVK 238 (253)
T ss_dssp HHTCCTT----THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHH
T ss_pred HHHHhcc----CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8777665 3556666789999999999999999999999999987765 444555555677888877766666
Q ss_pred HHHHHh
Q 002921 284 EFWHSY 289 (865)
Q Consensus 284 ~~l~~l 289 (865)
+.++.+
T Consensus 239 egL~rl 244 (253)
T 2db0_A 239 EGISRL 244 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.72 E-value=4.3e-07 Score=90.96 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhhhCc--chh-hhhHHHHHH-hhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHhc
Q 002921 367 LRKCSAAALDVLSNVFGD--EIL-PTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPL 441 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~--~~~-~~~~~~l~~-~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~ 441 (865)
-|..|...|..++..... .+. .-.+|.+.. ++.+++ ...|..|++++|.++.+.++.-...+. ..+|.++..
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~---~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA---AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 366777777777765432 221 134566677 888888 999999999999999765532211222 377888888
Q ss_pred cC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH-
Q 002921 442 LD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL- 518 (865)
Q Consensus 442 l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~- 518 (865)
++ ++++.+|..|+|+|++++...++. ..... ...++.++..+.+++..++..|+++|++++....+......
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~-----~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAG-----LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHH-----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 87 568899999999999998754321 11222 35788999999999999999999999999986433322222
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Q 002921 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (865)
Q Consensus 519 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (865)
..+++.|+.++...+..++..++.+++.++..
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 25788889999988888999999999988864
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.71 E-value=9e-07 Score=91.33 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHhchhhhhhccHHH--HHHHHHhccC-----------CCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002921 407 KDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLD-----------DKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (865)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (865)
.....|+.+|+.++... .....+-+ .++.++..+. ..++.+|..|+|+|.+++..-.. .
T Consensus 47 ~~~~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~------~ 118 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA------N 118 (354)
T ss_dssp GTHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH------H
T ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH------H
Confidence 44557788888887652 22222221 4444444442 13578999999999998753211 1
Q ss_pred hhh---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHh-cccchhhHHHHHHHHHHH
Q 002921 474 REQ---FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAF-GKYQRRNLRIVYDAIGTL 547 (865)
Q Consensus 474 ~~~---~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l-~~~~~~~~~~~~~~l~~l 547 (865)
... ...+++.|+..|.++++.++..|+++|.+++....+.....+ ...++.|+.++ ...+...++.+..++..+
T Consensus 119 k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 122 245699999999999999999999999999753111111111 24567777764 344556677778888877
Q ss_pred HHHhcccCCchhh--HhhhhHHHHHHHhcCCCCCc-ch-hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 002921 548 ADAVGFELNQPVY--LDILMPPLIAKWQQLPNSDK-DL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (865)
Q Consensus 548 ~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~-~~-~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (865)
+...... .+.. ....+|.|.+.+....+... .+ ..+..++.+++..+.
T Consensus 199 s~~~~~n--k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a-------------------------- 250 (354)
T 3nmw_A 199 SAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA-------------------------- 250 (354)
T ss_dssp HTTCHHH--HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HccChhh--hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc--------------------------
Confidence 6522111 0022 23556666666654321110 11 233333333332100
Q ss_pred cccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHH
Q 002921 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (865)
Q Consensus 624 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (865)
...+.-..... ...+|.|...+++.+..++..|+++|..++....+.......
T Consensus 251 --------------------------~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 303 (354)
T 3nmw_A 251 --------------------------TNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 303 (354)
T ss_dssp --------------------------TCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00000001111 136777788888889999999999999998654433322222
Q ss_pred -HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 002921 704 -DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE 742 (865)
Q Consensus 704 -~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 742 (865)
..+|.+.+.+++. +..++++|+++|..++...+..
T Consensus 304 ~G~i~~Lv~LL~s~----~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 304 MGAVSMLKNLIHSK----HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TTHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCCHHH
Confidence 3788999988887 7799999999999999876543
No 85
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.70 E-value=4.5e-05 Score=89.05 Aligned_cols=684 Identities=10% Similarity=0.071 Sum_probs=332.0
Q ss_pred HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhcc----CChhHHhHHHHHHH--HHHhhchhhc
Q 002921 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS----NDINHMEGAMDALS--KICEDIPQVL 166 (865)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~----~~~~~r~~al~~L~--~l~~~~~~~~ 166 (865)
.+...|+++-.+.=+.||+.|-.++..+.+.. ++.++.++|.+++.++. .+....++|+.+|. .+...+....
T Consensus 133 ~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~-~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~ 211 (997)
T 1vsy_5 133 LLLVDIIQLATSLYPDIYKPAQGTLVHCMKQL-VGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY 211 (997)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTB-TTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh
Confidence 34455555555677889999999999988774 67778888888887754 35566788888774 3332222211
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc--cH-------H-----------------------
Q 002921 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PS-------A----------------------- 214 (865)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~--~~-------~----------------------- 214 (865)
..+..+++.++++.....+.++..+-.++..++... |. .
T Consensus 212 ---------~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~ 282 (997)
T 1vsy_5 212 ---------KDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAK 282 (997)
T ss_dssp ---------HHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 346788888888877666777766666665655421 10 0
Q ss_pred ------hHHhHHHHHHHHHHhh-CCCC--HHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 002921 215 ------LFVSMDQYLQGLFLLS-NDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (865)
Q Consensus 215 ------~~~~~~~~l~~l~~~~-~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~ 285 (865)
....+..+...+.... .+.. +.....+...|..+..... .+.-+.++..+.+.+.++.+.+|..|+..
T Consensus 283 ~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 283 KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 0001112222222322 1223 4444444444333332211 13335677778888888899999999887
Q ss_pred HHHhhccCCchh----hHHhhh----------------hhHHHHHHhhccCChhhhhhhhh-------ccc--C------
Q 002921 286 WHSYFEAQLPHE----NLKEFL----------------PRLVPVLLSNMIYADDDESLVEA-------EED--E------ 330 (865)
Q Consensus 286 l~~l~~~~~~~~----~~~~~~----------------~~l~~~ll~~l~~~~~d~~~~~~-------~~~--~------ 330 (865)
+..+...-.... .....+ +.......+.+ +.|++ .+. |
T Consensus 360 l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~yfid~~~~~Gwl~Wp~~ 432 (997)
T 1vsy_5 360 LLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEM-------NNFDNPKYFIDLRAYVGWLCWGRL 432 (997)
T ss_dssp HTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHH-------SCCSSCCCBCCSCCCSBTTBCCSE
T ss_pred HHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHH-------hcccCCccceeCCCCCeEeeeCCc
Confidence 755543300000 000000 00000000000 01110 000 1
Q ss_pred ---CCCCc-cCCCCcc-------ccc-----------ccCCCCCCCCCCCccccccccHHHHHHHHHHHHH----hhhCc
Q 002921 331 ---SLPDR-DQDLKPR-------FHS-----------SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS----NVFGD 384 (865)
Q Consensus 331 ---~~~~~-~~~i~~~-------~~~-----------~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~----~~~~~ 384 (865)
+.+.. .-.+.|. |.. ... . ++ .++. +.| +..-..++..+. +.+|+
T Consensus 433 ~~vy~p~~~~l~~~~~e~~i~~~f~~~~~~~~~~~l~~~l-~-qe--~~~~---~~F--~~~~v~l~k~lf~l~~rn~~~ 503 (997)
T 1vsy_5 433 MYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNL-V-QD--NETR---GVF--SSGNVSFFSLVILLISSGFCE 503 (997)
T ss_dssp EEEECTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHH-H-HT--TTTT---CCC--CHHHHHHHHHHHHHHTTTTCC
T ss_pred eeEeCCCCCCCCCCHHHHHHHHHHHhhcCHHHHHHHHHHH-H-hh--cccc---Ccc--ccchHHHHHHHHHHHhcccch
Confidence 11111 0000000 000 000 0 11 0111 122 333445555555 46688
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchh----hhhhccHHHHHHHHHhccC-CCChHHHHHHHHHHHh
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI----KGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSR 459 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~ 459 (865)
..++.+.+.+...+.+.+ -....+|.-.++.+..+.. +........+.|.+...+. +-++..... |..
T Consensus 504 ~~l~~l~~~~e~L~~~~d---k~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~--W~~-- 576 (997)
T 1vsy_5 504 LNMSDLFELCESYYNKDD---KASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEI--WST-- 576 (997)
T ss_dssp CCGGGHHHHHHHTCCSSC---HHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHH--HHH--
T ss_pred hhHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHH--HHH--
Confidence 899999999999888876 6666777777777766654 2333445556776666666 344432221 111
Q ss_pred hHHHHhhhhCCCcchhhHHHHHHHH--HHH---HcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccch
Q 002921 460 FSKFIVQDIGHQNGREQFEKVLMGL--LKR---ILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR 534 (865)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~l--~~~---l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 534 (865)
+..++... ....-+..+++.+ ++. ..+.+..........|..++...+-.+.. ...++..+. ++..-.
T Consensus 577 ~i~~~~~~----~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~ 649 (997)
T 1vsy_5 577 LAWWLPAV----VDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYD 649 (997)
T ss_dssp HHHHHHHH----SCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCH
T ss_pred HHHHHhcC----CChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChH
Confidence 11122211 1344455666665 221 11222222223344555555444322222 345555544 666555
Q ss_pred hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccc--hHHHHHHHH
Q 002921 535 RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQF--AQPVFQRCI 612 (865)
Q Consensus 535 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~i~~~l~ 612 (865)
.+++.+...+..+....- . +.++.+ ..+++...... +. + ...++ -+.+...+.
T Consensus 650 ~VRe~Ig~~L~~i~~~~~---~--~~~~~~-~~~l~~~~~~~--~~---------------~--~~~~~~~~~~~~~~i~ 704 (997)
T 1vsy_5 650 QVRQAVAKLLTTLVQNQS---N--PSISDP-TTLLEAERNDP--DG---------------L--GLPLKSVPEKVDAYIK 704 (997)
T ss_dssp HHHHHHHHHHHHHHHTSC---C--CCBSCH-HHHHHHHHSCS--SS---------------S--CCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc---c--cCCCCH-HHHHHhhcccc--cc---------------c--cCccccCcchHHHHHH
Confidence 666666666666655431 1 111111 22222222110 00 0 00010 112222222
Q ss_pred HHHHHHHHHhhcccc--cCCCCCcchhHhhhhhhhHHHHHhhhh----hhhhcccchHHHHHHHHhcCCCh-hHHHH-HH
Q 002921 613 NIIQTQQLAKVDSVA--AGAQYDKEFVVCCLDLLSGLAEGLGSG----IESLVAQSNLRDMLLQCCMDDAS-DVRQS-AF 684 (865)
Q Consensus 613 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~al~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~l~~~~~-~vr~~-a~ 684 (865)
+.+..-.....+.+. .......++...+-.++.-+...++.. +.++++. .++|.++.+.+.++. ++... |.
T Consensus 705 ~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~-~llP~ll~l~~~~d~~eL~~~~a~ 783 (997)
T 1vsy_5 705 KQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVD-YVLPFLIGLVKHKDVCALASLDPV 783 (997)
T ss_dssp HHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTT-TTTTTTCTTSSCSHHHHHTTCCSH
T ss_pred HHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHH-HHHHHHHHHhhcCcHHHHHhhHHH
Confidence 222111100000000 000001122221222222333333333 4455543 377777666554433 33333 43
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHhcCchh
Q 002921 685 ALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS-PIVMTVVLCLVPILKHSEE 763 (865)
Q Consensus 685 ~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~il~~l~~~l~~~~~ 763 (865)
.++..+....- -..+++.++..+......+. ++ .|..++..+-.+.-+----+. .....+++.+..+|.++
T Consensus 784 ~~l~~ls~~~~--~~~~~~~~l~~l~~~~~~s~---sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~-- 855 (997)
T 1vsy_5 784 RLYAGLGYMPI--RKNHVAAIVDYVCSSNVALS---SN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNE-- 855 (997)
T ss_dssp HHHHHTSSSCC--CHHHHHHHHHHSSCTTTTSC---SS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCS--
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCC---cH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--
Confidence 44444332210 12334455555544443221 67 887776666555432211111 22356788888888877
Q ss_pred hh-hhHHHHHHHHHHhhhhhC-CCcccccHHHHHHHHHHHhcc-----------CCChHHHHHHHHHHHHHHhhCchhh-
Q 002921 764 LN-KSLIENSAITLGRLAWVC-PELVSPHMEHFMQPWCIALSM-----------IRDDTEKEDAFRGLCAMVKANPSGA- 829 (865)
Q Consensus 764 ~~-~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~~l~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~- 829 (865)
. -.||+.|..+|+-++... +.. ....++..+...+.. .++.-.+-.++.||+.++...|-.+
T Consensus 856 -q~~EVRe~Aa~tLsgll~c~~~~~---~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP 931 (997)
T 1vsy_5 856 -QFVEVRVRAASILSDIVHNWKEEQ---PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP 931 (997)
T ss_dssp -SCHHHHHHHHHHHHHHHHSCCSHH---HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS
T ss_pred -ccHHHHHHHHHHHHHHHHcCCchh---hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 5 679999999999998654 311 122333333333211 0111466789999999999999887
Q ss_pred -HhhHHHHHHHhhccCCCcc-HHHHHHHHH
Q 002921 830 -LSSLVFMCRAIASWHVRIT-LHLILLSVI 857 (865)
Q Consensus 830 -~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 857 (865)
.+++|.++..++.+.+.|+ +..++++-+
T Consensus 932 ~P~w~P~~l~~La~~~~~~~~i~~tvk~tl 961 (997)
T 1vsy_5 932 LPPWIPKNLSNLSSWARTSGMTGNAAKNTI 961 (997)
T ss_dssp CCTHHHHHHHHHHTTSSSCSSHHHHTHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 7899999999999999887 666665544
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.61 E-value=3.1e-06 Score=84.79 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhhhCc---chh-hhhHHHHHHhhcc-CCCcchhHHHHHHHHHHHHHhchhhhhhccHH-HHHHHHHh
Q 002921 367 LRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIP 440 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~ 440 (865)
+|..|..+|+.++...+. .++ ...+|.+.+++++ ++ ...|..|+++|+.++.+.++....... ..++.++.
T Consensus 98 vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~---~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC---DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCC---HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence 789999999999875532 222 2456677777775 46 789999999999999876654333332 47888889
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 002921 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (865)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (865)
.++++++.+|..|+|+++.++..-.. ....+ ..+++.++..|.+++..|++.|+.+|++++..
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~~~~------~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVGHPE------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCChH------HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999886321 22222 36889999999999999999999999999875
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.61 E-value=8.8e-07 Score=91.19 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCc---CCHhHHHHHHHHHhhh--h---hC-----CChhHHHHHHHHHHHHHHhcCcCC
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQYIKSELLPC--L---GA-----ADRHIRSTVGTIVSVVVQLGGIAG 128 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~---~~~~~~~~i~~~ll~~--l---~~-----~~~~vr~~~a~~l~~i~~~~~~~~ 128 (865)
+...++||.||..||..++.+-.. .....+ .+--.++-. | .| ...+||..+|++++.+ .+.++.
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence 578999999999999999876321 111111 222222222 2 22 2568999999999999 766554
Q ss_pred hHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002921 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (865)
-..+..+...+..+.|.+|++|+..|..+ . +.+ .. ++.+++.++.+|+|.+.+||..|..+|..++
T Consensus 262 -~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~---DLL--------~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 262 -NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K---EFV--------ED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp -CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G---GGC--------CC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H---HHH--------HH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 24455555556778999999999999887 2 111 11 6899999999999999999999999998887
Q ss_pred ccccHHhHHhHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 002921 209 MLMPSALFVSMDQYLQGLFLLSNDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (865)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l 286 (865)
.| ..++.++..++..+.+-+ ......++..|..++...... ...+.++|.+...+.+.-..||..++..+
T Consensus 328 --~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 328 --IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp --CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred --ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 33 334555666665544321 122245667777777654321 11237778888888999999999999888
Q ss_pred HHhh
Q 002921 287 HSYF 290 (865)
Q Consensus 287 ~~l~ 290 (865)
.++.
T Consensus 400 ~tfL 403 (800)
T 3oc3_A 400 KNLS 403 (800)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 7665
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.60 E-value=9.2e-06 Score=83.76 Aligned_cols=225 Identities=12% Similarity=0.114 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHHhccccHH--hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH--HHHHHHh
Q 002921 193 HTSLRKLSLGSVNQFIMLMPSA--LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYML 268 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~--~l~~~l~ 268 (865)
++.+|..|..+|.++....++. ........++.|+.++.+++++++..++.+|..++....+..+..+. ..++.++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 4689999999999998654321 11123456888999998889999999999999998642222222221 3455555
Q ss_pred hh-cCCCCHHHHHHHHHHHHHhhccCCchhhHHhh--hhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCccccc
Q 002921 269 QV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEF--LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (865)
Q Consensus 269 ~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 345 (865)
+. ....+.+++..+..++..++.. ....-... ....++.++..+....+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~~Lv~lL~~~~~~------------------------- 229 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLTYRSQT------------------------- 229 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHTTCCCSS-------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHHHHHHHhccCCCc-------------------------
Confidence 54 3556778888888888888763 11111122 245677776666532110
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhh--Ccc----hh-hhhHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002921 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDE----IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (865)
Q Consensus 346 ~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--~~~----~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~ 418 (865)
....++..|..+|..++... +++ +. ...++.+.+.+.+++ ...++.|+.+|+.
T Consensus 230 -----------------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~n 289 (354)
T 3nmw_A 230 -----------------NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWN 289 (354)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC---HHHHHHHHHHHHH
T ss_pred -----------------ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC---hHHHHHHHHHHHH
Confidence 01236777888888888632 211 11 235788888898888 8999999999999
Q ss_pred HHhchhhhhhccHH-HHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 419 IAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 419 l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
++.+..+....... ..+|.++..+.++++.+|..|+++|.+++..-
T Consensus 290 La~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 98655443322222 37899999999999999999999999998763
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.51 E-value=7.7e-06 Score=78.83 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=129.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc--CCchhhHHhh-hhhHH
Q 002921 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA--QLPHENLKEF-LPRLV 307 (865)
Q Consensus 231 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~-~~~l~ 307 (865)
-+.+...+..+++.|....+..++.+...++-++..+.-.+.+.+..+...+++++..+... ..... +.++ ...++
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~-~~~~ea~~~l 134 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP-MSQEEVSAFV 134 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 34577888888998888887777776667777777655444567888889999998887554 11111 2222 35667
Q ss_pred HHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchh
Q 002921 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (865)
Q Consensus 308 ~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (865)
|.++..+....+ ++|..+..++..+...++..
T Consensus 135 P~LveKlGd~k~----------------------------------------------~vR~~~r~il~~l~~v~~~~-- 166 (266)
T 2of3_A 135 PYLLLKTGEAKD----------------------------------------------NMRTSVRDIVNVLSDVVGPL-- 166 (266)
T ss_dssp HHHHHGGGCSSH----------------------------------------------HHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHhCCChH----------------------------------------------HHHHHHHHHHHHHHHHCCHH--
Confidence 777655543211 37999999998888877653
Q ss_pred hhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHH---HHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV---AFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 388 ~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
.+++.+.+.+++.+ |+.|.+++..++.+.+..+-. + ...+ +.+.+.+.|++..||.+|..++..+..+.
T Consensus 167 -~v~~~l~~g~ksKN---~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 167 -KMTPMLLDALKSKN---ARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp -HHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccCC---HHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 35566667788888 999999999999998866533 1 2346 88999999999999999999999888776
Q ss_pred h
Q 002921 465 V 465 (865)
Q Consensus 465 ~ 465 (865)
+
T Consensus 239 G 239 (266)
T 2of3_A 239 G 239 (266)
T ss_dssp T
T ss_pred h
Confidence 5
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.46 E-value=4.6e-06 Score=84.72 Aligned_cols=310 Identities=13% Similarity=0.066 Sum_probs=168.2
Q ss_pred hhhhhCCC--h-hHHHHHHHHHHHHHHhc--CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCC
Q 002921 99 LPCLGAAD--R-HIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (865)
Q Consensus 99 l~~l~~~~--~-~vr~~~a~~l~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (865)
...+++++ + ..|..+..++..+...+ +......++..+.+++.+++...|+.+...+..+.+. ++
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~--------- 100 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AE--------- 100 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SS---------
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HH---------
Confidence 35677653 2 34556666666666553 1223567899999999999999999988888777665 11
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch
Q 002921 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (865)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 253 (865)
..+ -..+.+.+-++++++-+|..|+.++..+... ++ ++.+.+.+.+.+.|.++.+|+.|+-+...+....|
T Consensus 101 --e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m---~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p 171 (355)
T 3tjz_B 101 --DVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TM---LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171 (355)
T ss_dssp --CGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TT---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH
T ss_pred --HHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH
Confidence 122 5677888899999999999999999999643 12 33445666777889999999999999999988888
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCC
Q 002921 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (865)
Q Consensus 254 ~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~ 333 (865)
+.+..++. .+...+.+.++.|...|+.++..+.+. .+. .+..+++.+... .
T Consensus 172 e~v~~~~~----~l~~ll~d~n~~V~~~Al~lL~ei~~~--d~~----a~~kLv~~l~~~----~--------------- 222 (355)
T 3tjz_B 172 DVVKRWVN----EAQEAASSDNIMVQYHALGLLYHVRKN--DRL----AVSKMISKFTRH----G--------------- 222 (355)
T ss_dssp HHHHTTHH----HHHHHTTCSSHHHHHHHHHHHHHHHTT--CHH----HHHHHHHHHHSS----C---------------
T ss_pred HHHHHHHH----HHHHHhcCCCccHHHHHHHHHHHHHhh--chH----HHHHHHHHHhcC----C---------------
Confidence 87655444 444456788888999999999888764 221 223333332110 0
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCc---chhhhhHHHHHHhhccCCCcchhHHH
Q 002921 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDRE 410 (865)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~ 410 (865)
+ ...|. -..++..+....++ ..-..+++.+...+++.+ ..+..
T Consensus 223 -----l----------------------~~~~~----q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~---~aVvy 268 (355)
T 3tjz_B 223 -----L----------------------KSPFA----YCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKH---EMVVY 268 (355)
T ss_dssp -----C----------------------SCHHH----HHHHHHHHTCC-----------------CCCCCSS---HHHHH
T ss_pred -----C----------------------cChHH----HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCC---hHHHH
Confidence 0 01121 12233333332221 233566777777888777 78888
Q ss_pred HHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC
Q 002921 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (865)
Q Consensus 411 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d 490 (865)
.|+.++..+...... .+...+..+...+.++++.+|..|+..+..+....+. .+...-..+..++.|
T Consensus 269 Ea~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---------~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 269 EAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---------AVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---------HHHHHHHHHHHHccC
Confidence 888888776442111 1122233344556678899999999999888876442 333445566777888
Q ss_pred CCHHHHHHHHHHH
Q 002921 491 TNKRVQEAACSAF 503 (865)
Q Consensus 491 ~~~~vr~~a~~al 503 (865)
++..++..|..+|
T Consensus 336 ~n~sI~t~Aittl 348 (355)
T 3tjz_B 336 ANRSIATLAITTL 348 (355)
T ss_dssp -------------
T ss_pred CcHhHHHHHHHHh
Confidence 8877766554443
No 91
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.41 E-value=1.3e-05 Score=73.15 Aligned_cols=199 Identities=12% Similarity=0.070 Sum_probs=150.1
Q ss_pred ccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhh-ccHHHHHHHHHhc
Q 002921 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPL 441 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 441 (865)
-.|.+|.+...+. . .+..+..+...+.+.| ...+..++.+++.+....++.+. ..+..+++.++..
T Consensus 17 ~sWkiK~a~ela~-----~-----~e~~l~~L~~LL~dkD---~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l 83 (265)
T 3b2a_A 17 LSWQILDAVSLAL-----E-----DKRALFLILELAGEDD---ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA 83 (265)
T ss_dssp HTTCHHHHHHHHH-----H-----CHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHH-----h-----chhHHHHHHHHHhccc---hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4688887664433 1 1234556667777777 99999999999999988765443 5677889999999
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 002921 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII 521 (865)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i 521 (865)
+.+++.+|.-.|..|++.+.+..+ -....+..+..++...+.+++.-++..++..++.+ ......+.+
T Consensus 84 lk~~dEkval~A~r~L~~LLe~vp------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V 151 (265)
T 3b2a_A 84 LSQENEKVTIKALRALGYLVKDVP------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLV 151 (265)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCC------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHH
T ss_pred HhccchhHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHH
Confidence 999999999999999999988765 35778889999999999999999999999999877 222235678
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHH
Q 002921 522 LQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIA 593 (865)
Q Consensus 522 ~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~l~ 593 (865)
+..+..++.+.+..++..++.++..++...++. ..+..++..+-+.+.. +|+.+ ..++..+..+.
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~----~i~~~I~~eI~elL~~---eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADS----GHLTLILDEIPSLLQN---DNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC----CCGGGTTTTHHHHHTC---SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH----HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence 888888887777788889999999888877654 5566677667677764 34443 34444444443
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.38 E-value=4.6e-05 Score=77.40 Aligned_cols=290 Identities=12% Similarity=0.001 Sum_probs=151.2
Q ss_pred CcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 84 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
..++...-..++-.+++++.+++..+|+..=..+..++.. +.+.. -....+.+-++++++.+|-.|+++|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence 5577766677888888999999999999776666665554 33333 5678889999999999999999999888552
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~ 243 (865)
..++.+.+.+.+.+.|.++-||+.|+-|...+....|+.. ..+++.+-.++.+.++-+...++.
T Consensus 135 ------------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ------------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ------------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHhcCCCccHHHHHHH
Confidence 2357889999999999999999999999999887765543 345677777788888888888888
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhh
Q 002921 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (865)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~ 323 (865)
++..+.+..+. .+..+++.+... .-.++-.....+.++..++... ..+ .-..+++.+.+++....
T Consensus 199 lL~ei~~~d~~----a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~----~~~~~~~~l~~~L~~~~----- 263 (355)
T 3tjz_B 199 LLYHVRKNDRL----AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGS----RDSPLFDFIESCLRNKH----- 263 (355)
T ss_dssp HHHHHHTTCHH----HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC----------------------CCCCCSS-----
T ss_pred HHHHHHhhchH----HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chh----hHHHHHHHHHHHHcCCC-----
Confidence 88888765432 233334332221 0112222222222222221110 000 01122222222222110
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCC
Q 002921 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (865)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 403 (865)
-.+-..|..++-.+.. .+...+......+...+.+++
T Consensus 264 -----------------------------------------~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d- 300 (355)
T 3tjz_B 264 -----------------------------------------EMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK- 300 (355)
T ss_dssp -----------------------------------------HHHHHHHHHHHTC------------CCCTHHHHHHSSS-
T ss_pred -----------------------------------------hHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC-
Confidence 0233344444433333 222333344555666677787
Q ss_pred cchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHH
Q 002921 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (865)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (865)
...|++|+..|..++...+..+..+ -..+..+++|+|..++.-|+.+|
T Consensus 301 --~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 --AALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --SSSHHHHHHCC-----------------------------------------
T ss_pred --chHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 8999999999999988766554433 33456788999998888886655
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.31 E-value=1.8e-05 Score=72.34 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=144.0
Q ss_pred HHHHHhhhhhCCChhHHHHHHHHHHHHHHhc----CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccC
Q 002921 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (865)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~----~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~ 169 (865)
....++.+|.+.++.++..+-.++..+.+.. ......++++.+...+.+.+..+.-.|++||+.+.++.+-.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~---- 109 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG---- 109 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC----
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC----
Confidence 4567778889999999999999999999873 23467889999999999999999999999999999986532
Q ss_pred CCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002921 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (865)
Q Consensus 170 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 249 (865)
+..+..+...+...+.++++-++..|...++.+ .. ....+.+++.+++++.+.+.+++..++.+|..++
T Consensus 110 -----~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv-----~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 110 -----SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP-----LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp -----HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB-----SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc-----ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 123466777788888889999999999999988 21 2223445666777778889999999999999999
Q ss_pred hhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 002921 250 EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (865)
Q Consensus 250 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~ 295 (865)
....+. .++..++.-+-..+++.|+.++..|+..+..+...+..
T Consensus 179 ~~S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 179 NSSADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp GGCSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred cccCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 866543 33444444444456778999999999999988877543
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.3e-05 Score=80.42 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=136.2
Q ss_pred ccccHHHHHHHHHHHHHhhhCc-----c---hhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhh------hhh
Q 002921 363 NVWNLRKCSAAALDVLSNVFGD-----E---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK------GLY 428 (865)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~-----~---~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~------~~~ 428 (865)
..|+.|..|.+-+..+....+. . .+..+.+.+...+.+.+ ..+...++.++..++..+.. ...
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN---~~v~~~al~~l~~~~~~~~~~~~~~~~~~ 97 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN---VVAQEQAIVALNSLIDAFASSSLKNAHNI 97 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS---HHHHHHHHHHHHHHHTTCC---CCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhcccchhH
Confidence 5799999999988877665432 1 13345677778888888 99999999999999876542 223
Q ss_pred ccHHHHHHHHHh-ccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 002921 429 PHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (865)
Q Consensus 429 ~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (865)
.+...++|.++. ++.|+.+.+|..+..++..+++... ....+++.+...+.+.++.++..++..|..++
T Consensus 98 ~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 456677887775 5899999999999888877665322 12355677778888999999999999999999
Q ss_pred HHhccc---hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccC
Q 002921 508 EEAAEE---LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (865)
Q Consensus 508 ~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (865)
...+.. ..+.++.+++.+..++.+.+..++..+..++..+...+|+..
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 886533 456788899999999999999999999999999999888653
No 95
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.29 E-value=7.6e-05 Score=71.94 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=142.9
Q ss_pred HHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002921 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (865)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (865)
-+...+.+.+ |+.|.+|+..|....+..++.+...++-+++-+.-.+.|+|+.|-..++.++..+...+... ...
T Consensus 50 ~~~~~lfs~d---~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKD---FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ETP 124 (266)
T ss_dssp HHHHHHTCSC---HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHHHHhcCCC---HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 3344556677 99999999999887776666666666667776666777999999999999999988777542 112
Q ss_pred chhh-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 002921 473 GREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (865)
Q Consensus 473 ~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (865)
...+ ...++|.++..+.|+...||..+-.++..+...++ ...+++.+...+++.+.+++...+..++.+....
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 2333 47899999999999999999999888877765432 2346777778888888888889999999999988
Q ss_pred cccCCchhhHhhhh---HHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccchHH
Q 002921 552 GFELNQPVYLDILM---PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQP 606 (865)
Q Consensus 552 ~~~~~~~~~~~~l~---~~l~~~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~ 606 (865)
|... ...+ |.+.+.+.+ .+..+ ..++.|+..+-...|+.+..+++.
T Consensus 199 G~~~------~~~l~~~~~ia~ll~D---~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 199 GISP------LKSLSVEKTVAPFVGD---KDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp CSGG------GGGGCHHHHHGGGGGC---SSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred CCCc------cccccchHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 8752 1234 555555542 34444 678899999988889876555443
No 96
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.14 E-value=8.1e-05 Score=86.94 Aligned_cols=171 Identities=8% Similarity=0.006 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhh-CcchhhhhHHHHHHhhc-cCCCcchhHHHHHHHHHHHHHhchhhhh-hccHHHHHHHHHhccCCCC-
Q 002921 371 SAAALDVLSNVF-GDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKF- 446 (865)
Q Consensus 371 a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~- 446 (865)
|..++..++... +...++.++..+.+..+ +++ | .|.+++..+..+.-...-.+ ......+...++.+|.|++
T Consensus 782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s---W-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~ 857 (997)
T 1vsy_5 782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS---N-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQF 857 (997)
T ss_dssp SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS---S-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc---H-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCcc
Confidence 556666665443 44556666666666555 445 9 99999888876654222111 1233568889999999999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHHHHHHhccch
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAFATLEEEAAEEL 514 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d------------~~~~vr~~a~~al~~l~~~~~~~~ 514 (865)
..||..|..+|+-+...... ......++..+.+.+.. .....|-+|...|+.++...+-.+
T Consensus 858 ~EVRe~Aa~tLsgll~c~~~-------~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v 930 (997)
T 1vsy_5 858 VEVRVRAASILSDIVHNWKE-------EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF 930 (997)
T ss_dssp HHHHHHHHHHHHHHHHSCCS-------HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS
T ss_pred HHHHHHHHHHHHHHHHcCCc-------hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999877643201 01112222222222211 011456677888888888877776
Q ss_pred --hhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcc
Q 002921 515 --APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (865)
Q Consensus 515 --~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (865)
.+++|+++..|.....+ ...+...+-.+++.+-++-.+
T Consensus 931 P~P~w~P~~l~~La~~~~~-~~~i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 931 PLPPWIPKNLSNLSSWART-SGMTGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp SCCTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHHHHHHTST
T ss_pred CCCcccHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhccch
Confidence 78999999888777766 334555667777777665443
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00016 Score=72.39 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=130.8
Q ss_pred HHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH--
Q 002921 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-- 213 (865)
Q Consensus 136 l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~-- 213 (865)
+.+.+.|.+|..|..|+.-|..++.........+ .. ...+..+.+.+-+.+.|.+..+...++.++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~--~~-~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRD--DN-IQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC-------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccch--hH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 5578899999999999999988887654332111 00 012345567777889999999999999999999876432
Q ss_pred ----HhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 002921 214 ----ALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (865)
Q Consensus 214 ----~~~~~~~~~l~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~ 288 (865)
........+++.++.- +.++...+|..+..++..+++.... ...+++.+...+.+.++.++..++.++..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2334456678877764 6788888999999999888865432 23456677778889999999999999988
Q ss_pred hhccCCch-hhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccH
Q 002921 289 YFEAQLPH-ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (865)
Q Consensus 289 l~~~~~~~-~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (865)
+.+..... -..++.++.+++.+...+...+ -.+
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~----------------------------------------------~~V 199 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGHGD----------------------------------------------RNV 199 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTCSS----------------------------------------------HHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhCCc----------------------------------------------HHH
Confidence 76541111 1123334444443333332211 248
Q ss_pred HHHHHHHHHHHHhhhCcc
Q 002921 368 RKCSAAALDVLSNVFGDE 385 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~~~ 385 (865)
|.+|..++..+...+|+.
T Consensus 200 R~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 200 RSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999999999999988853
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.12 E-value=4.6e-07 Score=79.11 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=83.2
Q ss_pred chhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHH
Q 002921 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (865)
Q Consensus 385 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (865)
...+...+.+...+++++ +..|..|+.+|+.+... . ++.+...++|+++.||..|+++++++..
T Consensus 8 ~~~~~~~~~l~~~L~~~~---~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADEN---KWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp -------------CCSSC---CCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred ccccccHHHHHHHhcCCC---HHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence 344566777788888888 99999998888765321 1 3677788899999999999999997653
Q ss_pred hhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHH
Q 002921 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (865)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l 544 (865)
...++.+.+.+.|+++.||..|+.+|+.+-. +..++.|...+++.+..++..+..++
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1346677777888999999999999987642 34566677777776667777777665
Q ss_pred H
Q 002921 545 G 545 (865)
Q Consensus 545 ~ 545 (865)
+
T Consensus 129 ~ 129 (131)
T 1te4_A 129 E 129 (131)
T ss_dssp G
T ss_pred H
Confidence 4
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.99 E-value=7.2e-05 Score=77.38 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHH
Q 002921 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRS 111 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~ 111 (865)
+|..|-+.|-.+..-|+-...+.+++........++||.+...||-. ... +. + ...+.+.++.+|.+.+..||.
T Consensus 244 VRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL---L~-~-Ld~Vv~aVL~GL~D~DDDVRA 317 (800)
T 3oc3_A 244 VRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEF---VE-D-KDGLCRKLVSLLSSPDEDIKL 317 (800)
T ss_dssp HHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG---CC-C-HHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHH---HH-H-HHHHHHHHHhhcCCcccHHHH
Confidence 78888888888743343345555555322356799999999999865 221 22 2 678888999999999999999
Q ss_pred HHHHHHHHHHHhcCcCChHHHHHHHHHhhccCCh--hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh
Q 002921 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (865)
Q Consensus 112 ~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~--~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (865)
.+|.++..++ .++..+.++..+..++.+-+. ......|..|+.++..-. ... ..+.++|.+..++
T Consensus 318 VAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~a~---------~dp~LVPRL~PFL 384 (800)
T 3oc3_A 318 LSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-ELS---------IPPERLKDIFPCF 384 (800)
T ss_dssp HHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-TCC---------CCSGGGGGTGGGG
T ss_pred HHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-ccc---------cChHHHHHHHhhh
Confidence 9999999999 467889999999999986432 233345777788777542 111 1258899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHH
Q 002921 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFN 246 (865)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~ 246 (865)
.++-..||.++++++..+. ...++..+++ .+-+++++++..+.+++.
T Consensus 385 RHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999998876 1233444444 234667888888888875
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.94 E-value=0.0049 Score=66.64 Aligned_cols=200 Identities=11% Similarity=0.069 Sum_probs=122.3
Q ss_pred HHHHHHhhhhh-CCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccC--ChhHHhHHHHHHHHHHhhchhhcc--
Q 002921 93 YIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLD-- 167 (865)
Q Consensus 93 ~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~L~~l~~~~~~~~~-- 167 (865)
.-.+.|...+. ..-..=|+.+...+..+++.++...-..-++.+...++.+ |.+....++.+|..+...-.+.-.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence 33455555554 3355567777777777765432211122356666666543 566667777777655443221000
Q ss_pred --cCCCC-CCCc------chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhH---HHHHHHHHHhhCCCCH
Q 002921 168 --SDVPG-LAEC------PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSA 235 (865)
Q Consensus 168 --~~~~~-~~~~------~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~ 235 (865)
....+ +... .-++-++.++..|+..+..+|..++++|..++...|......+ +.-++.++..+.++.+
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE 180 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE 180 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH
Confidence 00000 0000 0145577889999999999999999999999988776555443 2457889999999889
Q ss_pred HHHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 236 EVRKLVCAAFNLLIEVRPSFL-----EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 236 ~~r~~~~~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.+|..++..|..++...++.- ..-++.++..+-.-..-....+...++..+..+.+.
T Consensus 181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 999999999999998766531 122334443332221112345777888888888776
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.86 E-value=0.0073 Score=65.34 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHhhccC-ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHH
Q 002921 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (865)
Q Consensus 127 ~~w~~ll~~l~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~ 203 (865)
..-.+-++.|...+++. -..-|..|+..|..+.+.++.... ..-++.++..|++ .|.++-+.++.+
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-----------~~~l~~li~~L~~d~~D~e~v~~~Let 85 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-----------IQAMEHLIHVLQTDRSDSEIIGYALDT 85 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-----------HHTHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-----------hhhHHHHHHHHhcccccHHHHHHHHHH
Confidence 34466777777777665 467899999999998877665432 3447778888866 477888889999
Q ss_pred HHHHhccccH------------HhHHhH-------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHH---
Q 002921 204 VNQFIMLMPS------------ALFVSM-------DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--- 261 (865)
Q Consensus 204 l~~~~~~~~~------------~~~~~~-------~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~--- 261 (865)
|..+....++ ++...+ +.-++.++.+++..+..+|..++++|..++...++.....+-
T Consensus 86 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p 165 (651)
T 3grl_A 86 LYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP 165 (651)
T ss_dssp HHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred HHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence 9777643221 011111 234677888888889999999999999999998886655543
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 262 ~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
.=++.++..+++..+.+|..++-++..+++.
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 4677888889999999999999999999887
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.74 E-value=3.4e-05 Score=67.05 Aligned_cols=104 Identities=26% Similarity=0.342 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCC
Q 002921 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (865)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (865)
.+|..|...|+.+ |+.. ++.+...+++++ |.+|..++.+|+.+.. +..++.+...++|+
T Consensus 27 ~vR~~A~~~L~~~----~~~~----~~~L~~~L~d~~---~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~ 85 (131)
T 1te4_A 27 WVRRDVSTALSRM----GDEA----FEPLLESLSNED---WRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD 85 (131)
T ss_dssp CSSSSCCSSTTSC----SSTT----HHHHHHGGGCSC---HHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh----CchH----HHHHHHHHcCCC---HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC
Confidence 4666676666432 3321 367778888888 9999999999998753 23567777888899
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002921 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (865)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~ 505 (865)
++.||..|+++|+++.. ...++.+.+.++|+++.||..|+.+|+.
T Consensus 86 ~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999997642 2456778888889999999999998864
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.72 E-value=0.062 Score=61.09 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHH-HHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcC------
Q 002921 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG------ 125 (865)
Q Consensus 53 l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~-~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~------ 125 (865)
+++.|. +.++..|..|+..|.+.+... ....-..++ .+...+-.+|.+++..||..++.++++++...+
T Consensus 39 ll~~L~---S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLK---SPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp HHHHHS---SSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcC---CCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 445554 678999999999998887421 100111122 222334456789999999999999999987643
Q ss_pred ---cCChHHHHHHHHHhhc---cC-------Ch-------hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHH
Q 002921 126 ---IAGWLELLQALVTCLD---SN-------DI-------NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (865)
Q Consensus 126 ---~~~w~~ll~~l~~~l~---~~-------~~-------~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (865)
.+.|+.+...+.+... .. .. .....++.+|..+++.-...+..- .....++.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v-------~~~~~l~~l 187 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAV-------ATKQTILRL 187 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-------HTCHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HhcccHHHH
Confidence 2456666555543321 11 11 122335556666666544432110 013456666
Q ss_pred HHHhcC---CCHHHHHHHHHHHHHHhccccH
Q 002921 186 LQFFQS---PHTSLRKLSLGSVNQFIMLMPS 213 (865)
Q Consensus 186 ~~~l~~---~~~~vr~~a~~~l~~~~~~~~~ 213 (865)
+..|.+ ...+++..|+.||..+.+..++
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 666643 3578999999999999887544
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.57 E-value=0.0017 Score=60.23 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHH-hhccCChhHHhHHHHHHHHHHhhchhhcccCC
Q 002921 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (865)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~-~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~ 170 (865)
+.+......+..++...+|-.++.+++.. . .-++.++.+.. ...++++.+|+.+..+++.++....+
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------ 137 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------ 137 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH------
Confidence 34444444455678889999999877766 2 23889999998 66778999999999999888863221
Q ss_pred CCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 002921 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (865)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 250 (865)
+..++.+.....|++..||+.|......+... + .+......+++.+-.+..|++.-+|+.+...|..+.+
T Consensus 138 --------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 138 --------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp --------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 23577888999999999999999888665543 2 2233345567777778889999999999999999999
Q ss_pred hchhhhhhh
Q 002921 251 VRPSFLEPH 259 (865)
Q Consensus 251 ~~~~~~~~~ 259 (865)
..|+.+..+
T Consensus 208 ~~Pd~V~~~ 216 (240)
T 3l9t_A 208 KFPDLVKIE 216 (240)
T ss_dssp TCHHHHHHH
T ss_pred hCHHHHHHH
Confidence 998875543
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.46 E-value=0.0045 Score=58.84 Aligned_cols=153 Identities=10% Similarity=-0.055 Sum_probs=99.0
Q ss_pred hhHHHHHHhhccCCCcch--hHHHHHHHHHHHHHhchhhhhhccH-HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 389 TLMPVIQAKLSASGDEAW--KDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 389 ~~~~~l~~~l~~~~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
..+|.+.+.+++++ . ..+..|..++..++.+..+.-.... ...+|.++..|.++++.++..|+|+|..++..-.
T Consensus 8 ~~i~~lV~lL~s~~---~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADH---MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCC---chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45677888888887 6 7777788889888865443221111 2367999999999999999999999999986322
Q ss_pred hhhCCCcchhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhc----c---------
Q 002921 466 QDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG----K--------- 531 (865)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~----~--------- 531 (865)
.. ...-.-...++.+++.+. .++..+++.|+.+|.++....... ......-++.|...+. .
T Consensus 85 ~n----k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 85 DN----KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp HH----HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred HH----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccc
Confidence 10 011112356888999997 468999999999999886432110 1122233444444331 0
Q ss_pred ---cchhhHHHHHHHHHHHHH
Q 002921 532 ---YQRRNLRIVYDAIGTLAD 549 (865)
Q Consensus 532 ---~~~~~~~~~~~~l~~l~~ 549 (865)
.+..++..+..++..+..
T Consensus 160 ~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHhc
Confidence 122556677777777654
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.38 E-value=0.17 Score=52.20 Aligned_cols=281 Identities=13% Similarity=0.090 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcCCCc----HHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCC
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~-~~~p~~----~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~ 87 (865)
+.......|.+.... .. .++=|-+.+-++ +..|+. +..++.++. +.+..+|..|..-|-... .
T Consensus 27 ~~~~y~~Il~~~kg~-~k-~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE---Ded~~IR~qaik~Lp~~c-------k 94 (507)
T 3u0r_A 27 HKDAYQVILDGVKGG-TK-EKRLAAQFIPKFFKHFPELADSAINAQLDLCE---DEDVSIRRQAIKELPQFA-------T 94 (507)
T ss_dssp GHHHHHHHHHGGGSC-HH-HHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHGGGGC-------C
T ss_pred cHHHHHHHHHhcCCC-HH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhhHHHh-------h
Confidence 334444555554443 33 455555555554 446654 344555543 566777776654331111 1
Q ss_pred HhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
.+....+-..|.++|...++.-+...-.++..+.+.++......++..+.. ++..+|+.++..|..-+...+...-
T Consensus 95 ~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 95 GENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred hhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhc
Confidence 144556667777777777777777777777777777765555555555555 3567777776666555544443221
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhC------CCCHHHHHHH
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN------DPSAEVRKLV 241 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~r~~~ 241 (865)
. +..-..+...+.+.|+|.+..-=...+..|.++--.-.. .....+++.+..... ..+.+.....
T Consensus 171 ~------~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~---~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRl 241 (507)
T 3u0r_A 171 T------KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTV---SGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241 (507)
T ss_dssp C------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSH---HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHH
T ss_pred c------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCc---hHHHHHHHHHHHHHhccCCCCCcCHHHHHHH
Confidence 1 112244555666777665543223333344332111111 112233444433221 1355555666
Q ss_pred HHHHHHHHhhch------hhhhhhHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhc
Q 002921 242 CAAFNLLIEVRP------SFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (865)
Q Consensus 242 ~~~l~~l~~~~~------~~~~~~l~~l~~~l~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l 314 (865)
+.|+..-.-.+. .++.-+...++|.+-.+... ..++.+...+..+..++..-...+.....++.++..++.+|
T Consensus 242 I~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ym 321 (507)
T 3u0r_A 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYM 321 (507)
T ss_dssp HHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHC
Confidence 666655443222 22222333444432222221 12235666677776666552223555667788888888887
Q ss_pred cCCh
Q 002921 315 IYAD 318 (865)
Q Consensus 315 ~~~~ 318 (865)
-...
T Consensus 322 P~~p 325 (507)
T 3u0r_A 322 PLPP 325 (507)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 107
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=97.34 E-value=0.11 Score=51.02 Aligned_cols=204 Identities=12% Similarity=0.151 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccc
Q 002921 583 FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS 662 (865)
Q Consensus 583 ~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 662 (865)
..++.+++.++..+|..+.++++.|+..+.++ .+++ ++.+|
T Consensus 92 peVL~l~~tii~kl~~~i~~~vp~Il~~VFe~-------------------------TL~M-------I~~df------- 132 (321)
T 1w9c_A 92 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC-------------------------TLNM-------INKDF------- 132 (321)
T ss_dssp THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-------------------------HHHH-------HSSTT-------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------------------------HHHH-------Hhccc-------
Confidence 46777788888888877777777776654321 0110 01111
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhH----hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHh
Q 002921 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ----ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (865)
Q Consensus 663 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 738 (865)
++.++.|..-+.++..+..+|...+. +....++..+....++. ..++.+.+...+-.+..+
T Consensus 133 -----------~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~----~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 133 -----------EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT----MRNVADTGLQILFTLLQN 197 (321)
T ss_dssp -----------TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHH
T ss_pred -----------ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHHHHH
Confidence 25677888888888888888776543 34456777888888888 789999999888888776
Q ss_pred cc--cc-----ccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh---h----CC------CcccccHHHHHHHH
Q 002921 739 AR--QE-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW---V----CP------ELVSPHMEHFMQPW 798 (865)
Q Consensus 739 ~~--~~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~---~----~~------~~~~~~~~~~l~~~ 798 (865)
.. ++ ...|...+++.+..++.|+. ++..-..-+..|++|.. . .| +.-..++..++...
T Consensus 198 ~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~--Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~l 275 (321)
T 1w9c_A 198 VAQEEAAAQSFYQTYFCDILQHIFSVVTDTS--HTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANL 275 (321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS--CCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhCch--hhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHH
Confidence 64 22 24567888899999999885 44444444445555442 1 11 00011232333332
Q ss_pred H-HHhccCCChHHHHHHHHHHHHHHhhCchhhHhhHHHHHHHhhccC
Q 002921 799 C-IALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWH 844 (865)
Q Consensus 799 ~-~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~ 844 (865)
+ ++.++.. ...-...+.++.+.. .++.....++..|+-.+.+|.
T Consensus 276 L~~~Fp~l~-~~qi~~fv~glf~~~-~d~~~Fk~~lrDFLIqiKEf~ 320 (321)
T 1w9c_A 276 LKSAFPHLQ-DAQVKLFVTGLFSLN-QDIPAFKEHLRDFLVQIKEFA 320 (321)
T ss_dssp HHHHCTTSC-HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCC-HHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHhc
Confidence 2 3334432 233444455555443 255566666666666665553
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.08 E-value=0.35 Score=49.97 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
..+...+++|+.++. +.|..++. ..+.-.+.++.+..+.+..||.++...+-.+++. +..+.+...|.|+++
T Consensus 39 kg~~k~K~LaaQ~I~----kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIP----KFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQ 110 (507)
T ss_dssp GSCHHHHHHHHHHHH----HHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH----HHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHh
Confidence 457899999997765 44444443 3444457888888999999999988888888775 456889999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhH-HhHH
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMD 220 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~ 220 (865)
.+++..+...=..|.++.+.-+. ..+..++.-+..++..+|..+++.|..-+..++.... ..++
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E 175 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence 99887776666677666664332 2233333333335789999999999887766543322 2222
Q ss_pred -HHHHHHHHhhCCCCHHHHHHHHHHH
Q 002921 221 -QYLQGLFLLSNDPSAEVRKLVCAAF 245 (865)
Q Consensus 221 -~~l~~l~~~~~~~~~~~r~~~~~~l 245 (865)
.+...+...+.+-..+-....+.+|
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL 201 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKIL 201 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344555566654433333333333
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.02 E-value=0.032 Score=53.03 Aligned_cols=174 Identities=10% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHHHHHhhccCCh--hHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 132 LLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 132 ll~~l~~~l~~~~~--~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
-+|.+.+.++++++ ..+..|...+..++..-.+.-.. -.-...+|.+++.|.++++.++..|+.+|.++..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-------I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-------VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 36788889998887 77778888888888654332100 0113457999999999999999999999999986
Q ss_pred cccHHhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhc-------C-------
Q 002921 210 LMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-------K------- 272 (865)
Q Consensus 210 ~~~~~~~~~~--~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~-------~------- 272 (865)
..++. ...+ ...++.++.++. .++.++++.+..+|..+........ .....-++.+...+ .
T Consensus 82 ~~~~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 82 EDNDN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred CCHHH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccc
Confidence 43321 1111 134666777775 4678899999999988875432111 11122334443321 1
Q ss_pred --CCCHHHHHHHHHHHHHhhcc-CCchhhHHhhhhhHHHHHHhhcc
Q 002921 273 --DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMI 315 (865)
Q Consensus 273 --~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~~ll~~l~ 315 (865)
..+.+++..|..++..++.. +..++.++. .+.+++.++.++.
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVR 204 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHH
Confidence 13678999999999998764 233444443 2446666665554
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.98 E-value=0.021 Score=53.04 Aligned_cols=158 Identities=11% Similarity=0.130 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhh-hhhCCChhHH
Q 002921 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP-CLGAADRHIR 110 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~-~l~~~~~~vr 110 (865)
.-+.|...+..+. .+.+..++.-|.. +...++|..|+-+|.+. . -.. .+...+.. .-.+++-.||
T Consensus 56 ~~~~a~~~~~~~~--~~~~~~la~~L~~--~~~deVR~~Av~lLg~~-~-----~~~----~~L~~ir~~va~D~~WrVr 121 (240)
T 3l9t_A 56 EEQRALTDYKSND--GEYIKKLAFLAYQ--SDVYQVRMYAVFLFGYL-S-----KDK----EILIFMRDEVSKDNNWRVQ 121 (240)
T ss_dssp HHHHHHHHHHHSC--HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHT-T-----TSH----HHHHHHHHTGGGCSCHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHh--CcchHHHHHHHHHHHhc-c-----CcH----HHHHHHHHHhCCCCCccHH
Confidence 4444444444332 2334455666654 56679999999866544 1 112 23334444 3357899999
Q ss_pred HHHHHHHHHHHH-hcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHh
Q 002921 111 STVGTIVSVVVQ-LGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (865)
Q Consensus 111 ~~~a~~l~~i~~-~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (865)
..++.+++.++. .++. ..++.+...+.+++..+|..|...+.-.+.. + .+ ......++|.+....
T Consensus 122 e~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~--------k~dp~~ll~iL~~L~ 187 (240)
T 3l9t_A 122 EVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YF--------KENPNEAIRRIADLK 187 (240)
T ss_dssp HHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TT--------TTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hh--------hcCHHHHHHHHHHhc
Confidence 999999999997 4433 2677888999999999999998766432221 1 11 123477888888888
Q ss_pred cCCCHHHHHHHHHHHHHHhccccHHhHH
Q 002921 190 QSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (865)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 217 (865)
.|++.-||++....|..+....|+-...
T Consensus 188 ~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 188 EDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 9999999999999999999887655433
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.97 E-value=0.79 Score=51.99 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=90.0
Q ss_pred HHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhH-HHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002921 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL-PRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (865)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (865)
++|.+ +.++++++..|..|+.+|+.+++.-...-. -....++ +.+...+.|++.+||..|..+|.++...
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--------~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKL--------LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--------HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--------HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45544 458899999999999999999975332110 0113344 4566789999999999999999999755
Q ss_pred ccHHhHHh---------HHHHHHHHHHhhCC-------CCH-------HHHHHHHHHHHHHHhhchhhhhhhH-HHHHHH
Q 002921 211 MPSALFVS---------MDQYLQGLFLLSND-------PSA-------EVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEY 266 (865)
Q Consensus 211 ~~~~~~~~---------~~~~l~~l~~~~~~-------~~~-------~~r~~~~~~l~~l~~~~~~~~~~~l-~~l~~~ 266 (865)
....+..+ +..+++.....+.. ... .+...++.+|..+++...+.+.... ...++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 33222222 22222222211110 111 2334466677777776665543222 133333
Q ss_pred Hhhhc---CCCCHHHHHHHHHHHHHhhcc
Q 002921 267 MLQVN---KDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 267 l~~~~---~~~~~~v~~~a~~~l~~l~~~ 292 (865)
++..+ .....+++..+++++..+.+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 33332 223467899999999998776
No 112
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.70 E-value=1.3 Score=50.53 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=89.7
Q ss_pred CCHhHHHHHHHHHhh----hhhCCChhHHHHHHHHHHHHHHhcC---cCChHHHHHHHHHhhcc---CChhHHhHHHHHH
Q 002921 86 MSPSNQQYIKSELLP----CLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDS---NDINHMEGAMDAL 155 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~----~l~~~~~~vr~~~a~~l~~i~~~~~---~~~w~~ll~~l~~~l~~---~~~~~r~~al~~L 155 (865)
++++.+..+.+.+++ ++-+.+..+...+..++..+|...| .-..|.++..+...+.+ ..+....+++.+|
T Consensus 328 Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l 407 (799)
T 1vsy_4 328 LTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQF 407 (799)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 666766666555544 5568899999999999999999887 67788999999999887 4566666778888
Q ss_pred HHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002921 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (865)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (865)
..++..+...- ....++..++..++.++.-.|+.--..+++.+..++..+|
T Consensus 408 ~~~~r~lv~~~------~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 408 TRVIRFIVMDK------LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HTTHHHHTTST------TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCc------ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 77766544310 1123566777777788877888877888888888887654
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.69 E-value=0.00099 Score=63.93 Aligned_cols=186 Identities=20% Similarity=0.189 Sum_probs=120.3
Q ss_pred hhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchh
Q 002921 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (865)
Q Consensus 100 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 179 (865)
.++.++++.+|..++..+ + ...+..+++++++.+|..+...| +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~-------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------------- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P-------VEALTPLIRDSDEVVRRAVAYRL-------PR--------------- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C-------GGGGGGGTTCSSHHHHHHHHTTS-------CS---------------
T ss_pred HHhcCCCHHHHHHHHHhC-------C-------HHHHHHHccCcCHHHHHHHHHHC-------CH---------------
Confidence 455889999999988743 1 12356777899999998887431 10
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhh
Q 002921 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (865)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 259 (865)
+.+...++|+++.||..+...+ +.. .+..+++|++..+|..+...+ +.
T Consensus 101 ---~~L~~ll~D~d~~VR~~aA~~l-------~~~----------~L~~L~~D~d~~VR~~aA~~l-------~~----- 148 (244)
T 1lrv_A 101 ---EQLSALMFDEDREVRITVADRL-------PLE----------QLEQMAADRDYLVRAYVVQRI-------PP----- 148 (244)
T ss_dssp ---GGGGGTTTCSCHHHHHHHHHHS-------CTG----------GGGGGTTCSSHHHHHHHHHHS-------CG-----
T ss_pred ---HHHHHHHcCCCHHHHHHHHHhC-------CHH----------HHHHHHcCCCHHHHHHHHHhc-------CH-----
Confidence 1355678899999999988743 211 233456889999999877621 11
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCC
Q 002921 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (865)
Q Consensus 260 l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i 339 (865)
+.+....+|.+..||..+... + ... .+.. +.
T Consensus 149 -----~~l~~l~~D~d~~VR~~aa~~---l-----~~~----ll~~--------ll------------------------ 179 (244)
T 1lrv_A 149 -----GRLFRFMRDEDRQVRKLVAKR---L-----PEE----SLGL--------MT------------------------ 179 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHH---S-----CGG----GGGG--------ST------------------------
T ss_pred -----HHHHHHHcCCCHHHHHHHHHc---C-----CHH----HHHH--------HH------------------------
Confidence 123346678999999887763 1 110 0000 00
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHH
Q 002921 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (865)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 419 (865)
. +.+|.+|..+...+ +. +.+..++.+++ |.+|.++...++
T Consensus 180 -----------------~----D~d~~VR~aaa~~l-------~~-------~~L~~Ll~D~d---~~VR~~aa~~l~-- 219 (244)
T 1lrv_A 180 -----------------Q----DPEPEVRRIVASRL-------RG-------DDLLELLHDPD---WTVRLAAVEHAS-- 219 (244)
T ss_dssp -----------------T----CSSHHHHHHHHHHC-------CG-------GGGGGGGGCSS---HHHHHHHHHHSC--
T ss_pred -----------------c----CCCHHHHHHHHHhC-------CH-------HHHHHHHcCCC---HHHHHHHHHcCC--
Confidence 0 02477998888653 21 34555678888 999999888765
Q ss_pred HhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002921 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (865)
Q Consensus 420 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 458 (865)
.+.+... +|+++.||.++...||
T Consensus 220 ---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1334445 9999999999876554
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.46 E-value=0.67 Score=44.42 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCCh
Q 002921 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (865)
Q Consensus 66 ~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~ 145 (865)
..|.......+..+.+ -+++..+.+.+.+++...+++..+|+..+..+...++.. +..-+..++.|..+++++++
T Consensus 30 ~~kl~~L~qa~el~~~----~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLG----SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTT----TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHc----cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCH
Confidence 3555555555554444 245677777788888777889999999999999999775 45678899999999999999
Q ss_pred hHHhHHHHHHHHHHhhchhhcccCCCC--CCC---cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--cc------
Q 002921 146 NHMEGAMDALSKICEDIPQVLDSDVPG--LAE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML--MP------ 212 (865)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~--~~~---~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~--~~------ 212 (865)
.+.+.++.+...+....-......... ..+ ..+..+-..+++.+.+.+..+|..|++.+..++-. .+
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 998888888877766543333221000 000 11233444567777888999999999999998731 11
Q ss_pred -------------------HHhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhchhhhh
Q 002921 213 -------------------SALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 213 -------------------~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~ 257 (865)
..+...-..++..++....++ +...-..++.+|..+++..|.+..
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~ 250 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMG 250 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHH
Confidence 011122234566666655554 333455777888888888776543
No 115
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.43 E-value=1.9 Score=49.19 Aligned_cols=537 Identities=10% Similarity=0.049 Sum_probs=270.5
Q ss_pred cCCHhHHHHHHHHHhhhhhCC-ChhHHHHHHHHHHHHHHh--------------cCcCChHHHHHHHHHhhccCChhH--
Q 002921 85 SMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQL--------------GGIAGWLELLQALVTCLDSNDINH-- 147 (865)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~--------------~~~~~w~~ll~~l~~~l~~~~~~~-- 147 (865)
.++.+.+..+...+..++..+ ....+...+.++..+.+. +-.-.|..+...+.+.+-..+...
T Consensus 16 ~~~~~~~~~Lv~l~Y~l~~~~g~~~~~~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~LdWrPLy~~l~~~~~~~~~~~~~ 95 (799)
T 1vsy_4 16 DFPVALRKSLATVYYYLSLVQGQKVYRQMHVDMFERLVSLDDDRTQFTELLQKQGLLLDHQIMLNFLCEFLPYPDPDYAR 95 (799)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHSCSCBTTBCHHHHHHHTTCCCCHHHHHHHHTTTSCCSSTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCcccccchhhccccccceeccHHHHHHHHHhCCCcCccccc
Confidence 477788888877777755432 113336666777766542 124579999988877665443221
Q ss_pred -----Hh--HHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc-cHHhHHhH
Q 002921 148 -----ME--GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSM 219 (865)
Q Consensus 148 -----r~--~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~ 219 (865)
++ ..+..+..++..+...+....+ ...++++..+...+. ++. -..++..+..++-.. +++ .+.
T Consensus 96 ~~~~~~~~~~~~~~l~~l~~~ar~fF~~~~~----~~~~eil~e~~p~l~-p~s--~~~~~~~l~~fLP~~~~~~--~~~ 166 (799)
T 1vsy_4 96 YELSSKEDLQLFRLLLKHAHNAKPFFDKSKE----SLLVDTMNFLLSSLA-PST--MMAVMPIVTSVVPYHYHIH--SKI 166 (799)
T ss_dssp CCTTSTTTHHHHHHHHHHHHHTSTTSCTTCG----GGHHHHHHHHGGGCS-TTT--HHHHHHHHHHHSCCCCCSS--CCS
T ss_pred cccchhhhHHHHHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHHhcC-chh--HHHHHHHHHHHcCCCCCch--hhh
Confidence 11 4567777777666555441100 124677777776664 321 123344444443211 110 111
Q ss_pred HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhch------------h--hhhhh-------HHHHHHHHhhhcCCC--
Q 002921 220 DQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRP------------S--FLEPH-------LRNLFEYMLQVNKDT-- 274 (865)
Q Consensus 220 ~~~l~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~------------~--~~~~~-------l~~l~~~l~~~~~~~-- 274 (865)
..+++.++..-.. .+...-......+..+++... . ...+| ++.++..+++.+.+.
T Consensus 167 ~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~~~ 246 (799)
T 1vsy_4 167 IDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTDGQ 246 (799)
T ss_dssp GGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCcCC
Confidence 2445556554331 123333345556666665421 1 14456 888888777665421
Q ss_pred CHHHHHHHHHHHHHhhccCCchhhHHhhhhhHHHHHHhhccCChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCC
Q 002921 275 DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (865)
Q Consensus 275 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 354 (865)
....... ...+..... +........++.+++..+-++.--..
T Consensus 247 ~~~~~~~-a~~IV~sl~-~~~~~~~~~~L~~Li~~iesy~HPSN------------------------------------ 288 (799)
T 1vsy_4 247 IHSYSRT-VKPFVYAIN-GSKKDRFFEKLVSLAKAIETFIHPSN------------------------------------ 288 (799)
T ss_dssp CSSHHHH-HHHHHTTCC-TTSCTTTHHHHHHHHHHHHHHHSTTC------------------------------------
T ss_pred ccchHHH-HHHHHHHcC-CCCchHHHHHHHHHHHHHhcccCCCC------------------------------------
Confidence 1111111 111111111 11123344456666655533322110
Q ss_pred CCCCccccccccH------HHHHHHHHHHHHhh-------hC----------cchhhhhHHHHHHhhccCCCcchhHHHH
Q 002921 355 EDDDDDIVNVWNL------RKCSAAALDVLSNV-------FG----------DEILPTLMPVIQAKLSASGDEAWKDREA 411 (865)
Q Consensus 355 ~~~~~d~~~~~~~------r~~a~~~l~~l~~~-------~~----------~~~~~~~~~~l~~~l~~~~~~~~~~r~~ 411 (865)
.+.|+. +.......+++..- .+ +.++..+.|.+...+.+.+ -.....
T Consensus 289 -------~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~---~~~~~~ 358 (799)
T 1vsy_4 289 -------NGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKN---PDIANY 358 (799)
T ss_dssp -------CSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSS---HHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCC---cchHHH
Confidence 012321 11222222222211 11 2345677788877787777 777788
Q ss_pred HHHHHHHHHhchhhhhhccHHHHHHHHHhccCC---CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 002921 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (865)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 488 (865)
+..++..++.-.+..-.-.++.++..+.+.|.. .++.-..+++.++..++..+... .....++..++..+++++
T Consensus 359 ~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~---~~yr~hl~~lL~l~LpgI 435 (799)
T 1vsy_4 359 YISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMD---KLYRVHITNVLSMLVSKL 435 (799)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTS---TTGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHhccC
Confidence 888999888754411123456666667777665 44554556788888888776531 123457778888888887
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh----------------------------------------------------ccchhh
Q 002921 489 LDTNKRVQEAACSAFATLEEEA----------------------------------------------------AEELAP 516 (865)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~----------------------------------------------------~~~~~~ 516 (865)
+-+++.--..+...+..++... ...+..
T Consensus 436 D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~ 515 (799)
T 1vsy_4 436 DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQS 515 (799)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHH
Confidence 7666655555666666665432 111345
Q ss_pred hHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCC--cchhhHHHH--HHH
Q 002921 517 RLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD--KDLFPLLEC--FTS 591 (865)
Q Consensus 517 ~~~~i~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~--l~~ 591 (865)
.+..++.+++.++.+..++ ....+..++..+...+.+ +.++.++..+.+...+..... +.+..+ .. ++.
T Consensus 516 ~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~-----~if~~~l~k~~~fv~~n~~~~a~~~v~~L-~~~~~~a 589 (799)
T 1vsy_4 516 MLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD-----KIFNYFASLLNRNFWSNDSFKEKDPNYEL-VTIPLAA 589 (799)
T ss_dssp HHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH-----HHHHHHHHHHHHHHHSCSCCCSSSCCTHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHH
Confidence 5666777777777653322 223444455555555544 455666666655544322111 111122 11 344
Q ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHhhcccccCCC--CCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHH
Q 002921 592 IAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ--YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (865)
Q Consensus 592 l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 669 (865)
+++.-++. +..++|.+...+...............+ +...-...-+.+++.++..-|....+|-++ ++.++.
T Consensus 590 ~~~~~P~~----~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~de--L~~il~ 663 (799)
T 1vsy_4 590 LVRRNNGL----SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDE--LITFMK 663 (799)
T ss_dssp HHHHCGGG----HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHH--HHHHHH
T ss_pred HHHhCHHH----HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHH--HHHHHH
Confidence 44443332 4455555555444322111000001111 111223345667777777777777777766 888777
Q ss_pred HHhc-CCChhHHHHHHHHHHHHHhh
Q 002921 670 QCCM-DDASDVRQSAFALLGDLARV 693 (865)
Q Consensus 670 ~~l~-~~~~~vr~~a~~~l~~l~~~ 693 (865)
.++. .+...+-..+..++..++..
T Consensus 664 ~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 664 YLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp HHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHH
Confidence 7664 34444334454445444443
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.36 E-value=0.77 Score=45.19 Aligned_cols=186 Identities=11% Similarity=0.133 Sum_probs=125.6
Q ss_pred HHhhhhhCCChhHHHHHHHHHHHHHHhcCc---------CChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhh--chh-
Q 002921 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLELLQALVTCLDSNDINHMEGAMDALSKICED--IPQ- 164 (865)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~---------~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~--~~~- 164 (865)
.|+..|..=+-.-|+.++++.+.+.+.... ...|+++..|..+..+++...-.|. +|+..++. +..
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e~la~~ 159 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHEPLAKI 159 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSHHHHHH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhHHHHHH
Confidence 334444444556666666666666665321 1358889999998887764333322 33333331 111
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc----HHhHHhHHHHHHHHHHhhCCCCHHHHHH
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVRKL 240 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~r~~ 240 (865)
.+. +..+-.+++..+.++-+|-..|+.++..+..... +.+..+.+.+....-.++.+++.-+|++
T Consensus 160 iL~-----------~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 160 ILW-----------SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHH-----------SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred Hhc-----------cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 111 1223366678888999999999999998875432 3355667777888878888889999999
Q ss_pred HHHHHHHHHhh--chhhhhhhHH--HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 002921 241 VCAAFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (865)
Q Consensus 241 ~~~~l~~l~~~--~~~~~~~~l~--~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~~~~ 295 (865)
+++.|+.+.-. ....+..|+. .-+..++..+.+....++..|+.++.-++..+..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 99999998864 3455666664 5667788889999999999999998887766433
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.98 E-value=0.32 Score=44.08 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhhC-cchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCC--
Q 002921 368 RKCSAAALDVLSNVFG-DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-- 444 (865)
Q Consensus 368 r~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-- 444 (865)
|..|...+ ...-| ...+|.+..++.+.+...- .++..-...+....++..+..-.+.+|+.+++|.++.++-.
T Consensus 25 r~~aL~sL---~~D~gL~~LlPyf~~fI~~~v~~nl-~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 25 KDIAIECL---EKESGLQQLVPYFIQHISELILKSF-KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp HHHHHHHH---HHCSSCTTTHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH---hcCCChhhhHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 55555544 33334 2556666666655443321 12776666777777777776667789999999999988622
Q ss_pred -CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Q 002921 445 -KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEE 508 (865)
Q Consensus 445 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~ 508 (865)
....+|.-|+..++.++..+... ....-..++..+.+.+.|+ +...+-.|...+..+-.
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~-----y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRS-----YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTT-----STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCcc-----CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 11279999999999999998642 3445678889999999886 45666677666665543
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.97 E-value=0.0078 Score=57.69 Aligned_cols=133 Identities=22% Similarity=0.227 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~ 141 (865)
+.++.+|..|+..| ++ ..+..++.++++.||..++..+ +. +.+...++
T Consensus 61 d~~~~VR~~AA~~l-----------~~-------~~l~~L~~D~~~~VR~~aA~~L-------~~-------~~L~~ll~ 108 (244)
T 1lrv_A 61 DPFWERRAIAVRYS-----------PV-------EALTPLIRDSDEVVRRAVAYRL-------PR-------EQLSALMF 108 (244)
T ss_dssp CSSHHHHHHHHTTS-----------CG-------GGGGGGTTCSSHHHHHHHHTTS-------CS-------GGGGGTTT
T ss_pred CCCHHHHHHHHHhC-----------CH-------HHHHHHccCcCHHHHHHHHHHC-------CH-------HHHHHHHc
Confidence 67899999998743 22 1355667899999999988642 11 34677788
Q ss_pred cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHH
Q 002921 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (865)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 221 (865)
++++.+|..+...+ +. . .+...++|+++.||..+...+ +..
T Consensus 109 D~d~~VR~~aA~~l-------~~---------------~---~L~~L~~D~d~~VR~~aA~~l-------~~~------- 149 (244)
T 1lrv_A 109 DEDREVRITVADRL-------PL---------------E---QLEQMAADRDYLVRAYVVQRI-------PPG------- 149 (244)
T ss_dssp CSCHHHHHHHHHHS-------CT---------------G---GGGGGTTCSSHHHHHHHHHHS-------CGG-------
T ss_pred CCCHHHHHHHHHhC-------CH---------------H---HHHHHHcCCCHHHHHHHHHhc-------CHH-------
Confidence 99999998877632 11 1 234457899999999998732 211
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 002921 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (865)
Q Consensus 222 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~ 285 (865)
.+..+++|+++.+|..+...+ +. +.+.....|.+.+||..+.+.
T Consensus 150 ---~l~~l~~D~d~~VR~~aa~~l-------~~----------~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 150 ---RLFRFMRDEDRQVRKLVAKRL-------PE----------ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp ---GGGGTTTCSCHHHHHHHHHHS-------CG----------GGGGGSTTCSSHHHHHHHHHH
T ss_pred ---HHHHHHcCCCHHHHHHHHHcC-------CH----------HHHHHHHcCCCHHHHHHHHHh
Confidence 223456789999999877741 11 233356789999999888764
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.81 E-value=1.7 Score=44.24 Aligned_cols=192 Identities=15% Similarity=0.190 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhH
Q 002921 68 RQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINH 147 (865)
Q Consensus 68 R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~ 147 (865)
|......+++.+.+. +++..+.+...+++.-.+++..+|+.++..+...+..+ .+..+..++.|..++.++++.+
T Consensus 42 Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 42 KITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHH
Confidence 444444444544431 34455556667777777889999999999999999875 4456899999999999989988
Q ss_pred HhHHHHHHHHHHhhchhhc-ccCCCC-CCC---cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc------H---
Q 002921 148 MEGAMDALSKICEDIPQVL-DSDVPG-LAE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------S--- 213 (865)
Q Consensus 148 r~~al~~L~~l~~~~~~~~-~~~~~~-~~~---~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~------~--- 213 (865)
...++.+...+....-... ...... ..+ ..+..+-..++..+.+.+..+|..|++.+..++-... +
T Consensus 117 ~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~ 196 (386)
T 3o2t_A 117 VKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPR 196 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 8888887777664332211 111000 000 1123344456777778899999999999998873110 0
Q ss_pred ---------------------HhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 002921 214 ---------------------ALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (865)
Q Consensus 214 ---------------------~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (865)
.+...-..++..++..+..+ +.-.-..++.+|..+++..|.+....++.+.
T Consensus 197 ~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 197 RQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYE 270 (386)
T ss_dssp GGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred ccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 01112235677777777643 3444556788888899988876554444443
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.73 E-value=0.078 Score=48.05 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=81.7
Q ss_pred ChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 002921 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLV 755 (865)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~ 755 (865)
+.......+.....++.+-.-.+.||+..++|.++.++-..+.... .+|+-|+..++.++...+.....--..++..+.
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 4555556677777777776667789999999999999866544222 799999999999999987655444566888888
Q ss_pred HHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHHhc
Q 002921 756 PILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALS 803 (865)
Q Consensus 756 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~ 803 (865)
+.+.++.. +. ....+++.-+...+++.+...+-+-++.|.+.+-
T Consensus 138 k~l~dp~~-~l---~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~~ 181 (196)
T 4atg_A 138 GVWMDPNR-SE---DSQYGALYCLSILSKNVVNTVIREHAEEYKRTIG 181 (196)
T ss_dssp HHHTCTTS-CH---HHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHTC
T ss_pred HHHcCCCC-Ch---HHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHHH
Confidence 88887741 22 3444454444444444444444333455554443
No 121
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.14 E-value=2.4 Score=40.57 Aligned_cols=145 Identities=5% Similarity=0.059 Sum_probs=101.6
Q ss_pred HHHHHHHhhhhhC----CChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcc
Q 002921 92 QYIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (865)
Q Consensus 92 ~~i~~~ll~~l~~----~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (865)
..-++.+..+|++ ++ ..+-..-.-+..++....+..+|++++.+.+...+++..+|.-....+.+.+..-.
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---- 85 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---- 85 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----
Confidence 3444555555542 33 34333333444444443466889999999998888888899888888888775422
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc----c---cc------HHhHHhHHHHHHHHHHhhCCCC
Q 002921 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM----L---MP------SALFVSMDQYLQGLFLLSNDPS 234 (865)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~----~---~~------~~~~~~~~~~l~~l~~~~~~~~ 234 (865)
......++.+..++++.++.|.+.++.+..++-. + .+ ...+..+..+=..++....+.+
T Consensus 86 --------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n 157 (257)
T 3gs3_A 86 --------ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNEN 157 (257)
T ss_dssp --------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSC
T ss_pred --------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCC
Confidence 3468888999999999999999988888777542 1 11 2455666666677777777788
Q ss_pred HHHHHHHHHHHHHHH
Q 002921 235 AEVRKLVCAAFNLLI 249 (865)
Q Consensus 235 ~~~r~~~~~~l~~l~ 249 (865)
..+|..+++.+..++
T Consensus 158 ~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 158 DGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999988776
No 122
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.13 E-value=1.1 Score=44.08 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhCcCCHh-----HHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCC---hHHHH
Q 002921 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPS-----NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG---WLELL 133 (865)
Q Consensus 62 ~~~~~~R~~a~~~L~~~i~~~w~~~~~~-----~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~---w~~ll 133 (865)
..+-+.|.-++.++.+.++..-..-.+. .+..+...|+.+.. ++.+--..+.++...++++.-.. +.+.+
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~la~~iL~~~~f 166 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEPLAKIILWSEQF 166 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHHHHHHHHHSGGG
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHHHHHHHhccHHH
Confidence 5677778777777777776433221111 12233334444443 34444556666666666531000 01122
Q ss_pred HHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc--
Q 002921 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-- 211 (865)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~-- 211 (865)
-.+.+.++.++=++-.-|+..+..+......... +.+....+.++..+-+++++++...|+.+++.|+.++..-
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva----efL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N 242 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSA----EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 242 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHH----HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHH----HHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH
Confidence 2445677777777777788888877765432111 0112345788888999999999999999999999997431
Q ss_pred cHHhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002921 212 PSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (865)
Q Consensus 212 ~~~~~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 251 (865)
......++ +.-+..++.++.+++..++-.|+-++.-++.+
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 11222222 34467788889999999999999999888764
No 123
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.67 E-value=4.7 Score=39.72 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=92.3
Q ss_pred hhHHHH-HHHHHHHHHhchhhhhhccHHHHHHHHHhc----cC---CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH
Q 002921 406 WKDREA-AVLALGAIAEGCIKGLYPHLSEIVAFLIPL----LD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (865)
Q Consensus 406 ~~~r~~-a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~----l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 477 (865)
+..|++ .+.++..++...++.+.+.++.|+..++.+ ++ +..|..|..-...+..+..++-+.+- ....+.+
T Consensus 87 p~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~-~lp~~~f 165 (321)
T 1w9c_A 87 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL-AIPPTQF 165 (321)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHH-HSCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHH-cCCHHHH
Confidence 556655 455667777777777888888888876654 33 36899999999999998887644210 1245678
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHHHHHHHHHhcccc
Q 002921 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEIILQHLMMAFGKYQ 533 (865)
Q Consensus 478 ~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~ 533 (865)
..+++.++=++++++..|.+.+...+..++.+... -...|+-.+++.++..+.+..
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 88999999999999999999999999998887632 134456667776666665543
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.49 E-value=11 Score=44.77 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHHHHHHHhc-------CcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcc
Q 002921 105 ADRHIRSTVGTIVSVVVQLG-------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (865)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~-------~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (865)
.++.+|..+..+++.+++.. +.+..+.+...+.+.+...+...+..++++|+.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------------- 469 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------------- 469 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------------
Confidence 46678888888888888763 223356777777777777777777888888876633
Q ss_pred hhhhHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHH
Q 002921 178 INIFLPRLLQFFQS-------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--NDPSAEVRKLVCAAFNLL 248 (865)
Q Consensus 178 ~~~l~~~l~~~l~~-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~r~~~~~~l~~l 248 (865)
+..++.+.+++.. ....+|..|+.+|..+....|....+ .+++.. ...+.++|..|+..|.
T Consensus 470 -p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~-------il~~i~~n~~e~~EvRiaA~~~Lm-- 539 (1056)
T 1lsh_A 470 -PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE-------IVLPIFLNVAIKSELRIRSCIVFF-- 539 (1056)
T ss_dssp -GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHH--
T ss_pred -hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH-------HHHHHhcCCCCChHHHHHHHHHHH--
Confidence 2345555555532 24688999999998887654433332 223333 2346888888777664
Q ss_pred HhhchhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcc
Q 002921 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (865)
+..|.. ..+..+...+ -.+.+..|+....+.+..+++.
T Consensus 540 -~t~P~~--~~l~~ia~~l---~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 540 -ESKPSV--ALVSMVAVRL---RREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HTCCCH--HHHHHHHHHH---TTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HHCcCH--HHHHHHHHHH---hhCchHHHHHHHHHHHHHHHhc
Confidence 333432 2344444432 2456788888888888888776
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.79 E-value=9.6 Score=38.91 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=104.4
Q ss_pred cCCHhHHHHHHHHHhhhhhCCC-hhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhch
Q 002921 85 SMSPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (865)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (865)
.+.++.+..+...|+.+.+.+. ...-.+++.++...+..++ ..-..++..++...--.++.-...-+.-+..+++..+
T Consensus 205 PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~ 283 (403)
T 3fga_B 205 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIE 283 (403)
T ss_dssp SCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCC
T ss_pred CchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 3667888888888888877653 3456788888888888773 2334556666665555554433344555666776654
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHH--HhccccHHhHHhHHHHHHHHHHhhC-CCCHHHHHH
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKL 240 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~r~~ 240 (865)
+.- |......++..+.+++++++..|-..|+..+.+ ++..+.+.....++.+.+.+..... +-+..++..
T Consensus 284 ~~~-------f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l 356 (403)
T 3fga_B 284 PSE-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356 (403)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 321 123456778888888999999998888766522 1111111111223334444544333 347889999
Q ss_pred HHHHHHHHHhhchhhhhh
Q 002921 241 VCAAFNLLIEVRPSFLEP 258 (865)
Q Consensus 241 ~~~~l~~l~~~~~~~~~~ 258 (865)
++.++..+.+..++.+..
T Consensus 357 ~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 357 IYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp HHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHhCHHHHHH
Confidence 999999999888776654
No 126
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.43 E-value=11 Score=39.10 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH--HHHhcc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGE--LAVKAR 740 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~--l~~~~~ 740 (865)
++..++++.--++..-...-+.-+++++...+ ..+......++..+.+++++. +..|-+.|+....+ ++.
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~----hfqVAErAL~~w~N~~i~~--- 357 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP----HFQVAERALYYWNNEYIMS--- 357 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS----CHHHHHHHHGGGGCHHHHH---
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHCCHHHHH---
Confidence 44444444333444433455666777887765 678888999999999999998 67777766544321 111
Q ss_pred ccccchHHHHHHHHHHHhcC-chh-hhhhHHHHHHHHHHhhhhhCC
Q 002921 741 QEISPIVMTVVLCLVPILKH-SEE-LNKSLIENSAITLGRLAWVCP 784 (865)
Q Consensus 741 ~~~~~~~~~il~~l~~~l~~-~~~-~~~~~~~~~~~~l~~l~~~~~ 784 (865)
-+..+...+++.+.+.+.. .+. +...++..+..++.-+...+|
T Consensus 358 -li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 358 -LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp -HHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred -HHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 1234556677777776633 222 356688888888776665544
No 127
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.28 E-value=11 Score=38.44 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH--HHHhcc
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGE--LAVKAR 740 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~--l~~~~~ 740 (865)
++..++++.-.++..-...-+.-+++++...+ ..+.+....++..+.+++.+. +..|-+.|+....+ ++.-
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~----hfqVAErAL~~wnNe~i~~l-- 325 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP----HFQVAERALYYWNNEYIMSL-- 325 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS----CHHHHHHHHGGGGCHHHHHH--
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHhccHHHHHH--
Confidence 44444444433444444455666777887775 678888999999999999998 66776666543321 1111
Q ss_pred ccccchHHHHHHHHHHHhcC-chh-hhhhHHHHHHHHHHhhhhhCCCcccc
Q 002921 741 QEISPIVMTVVLCLVPILKH-SEE-LNKSLIENSAITLGRLAWVCPELVSP 789 (865)
Q Consensus 741 ~~~~~~~~~il~~l~~~l~~-~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~ 789 (865)
+..+...+++.+.+.+.. .+. +...++..+..++.-+...+|..+..
T Consensus 326 --i~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 326 --ISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp --HHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 234555667776666633 222 45667777788887777777665543
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.29 E-value=4.9 Score=34.28 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcc
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (865)
.-...+..+.+.+.+.++.++..|...+..++++||..+...+ ..+++.+.++++..+..++..+++.+...+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3467788899999999999999999999999999987664332 34555556666556667777888888877776654
Q ss_pred c
Q 002921 554 E 554 (865)
Q Consensus 554 ~ 554 (865)
.
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.16 E-value=7.5 Score=46.33 Aligned_cols=175 Identities=15% Similarity=0.053 Sum_probs=113.5
Q ss_pred cHHHHHHhhhccc-CCCHHHHHHHHHHHHHHHHhhhCc---CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc
Q 002921 49 FNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 49 ~~~~l~~il~~~~-~~~~~~R~~a~~~L~~~i~~~w~~---~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (865)
.+..+..++.+.+ ..++.+|..|...+...+.+.... .+++....+.+.+.+.+...+..-+..+..+++++..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 5556666665321 246778998988888888765432 3456677788888888887777777777777777664
Q ss_pred CcCChHHHHHHHHHhhcc-------CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC--CCHH
Q 002921 125 GIAGWLELLQALVTCLDS-------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTS 195 (865)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~-------~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~ 195 (865)
|..++.|.+++.. ....+|..|+.+|..+....+ ..+-+.+++.+.| .+++
T Consensus 470 -----p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------------~~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 470 -----PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------------RKVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp -----GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------------HHHHHHHHHHHHCTTSCHH
T ss_pred -----hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------------HHHHHHHHHHhcCCCCChH
Confidence 3345555555532 134677889888877764332 3455667777755 5889
Q ss_pred HHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhchh
Q 002921 196 LRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPS 254 (865)
Q Consensus 196 vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~ 254 (865)
+|.+|+..|... .|+. .++..+...+ .+++.+++.-+...|..+++....
T Consensus 530 vRiaA~~~Lm~t---~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHH---CcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 999998888433 2211 1233333333 456788888888888888876543
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.16 E-value=18 Score=36.87 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=116.2
Q ss_pred CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHH
Q 002921 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (865)
Q Consensus 383 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (865)
....++.+++.+.+.-.+++ ...|.-....+...+.. -..++..+++.+...++|.++.|...++.+.+.+..
T Consensus 57 dpsLl~~fl~~il~f~~d~~---~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 57 DPTLLDNFLDEIIAFQADKS---IEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp CGGGGGGGHHHHHGGGGCSC---HHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44678888888888877777 88998888887776642 235678888888888999999998888888877664
Q ss_pred HHhhhh--CCC------cchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-----------------------
Q 002921 463 FIVQDI--GHQ------NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----------------------- 511 (865)
Q Consensus 463 ~~~~~~--~~~------~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~----------------------- 511 (865)
..-.++ ++. ..-..+..+-..++..+.+.+..||..|...+..++-...
T Consensus 130 l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~ 209 (386)
T 3o2t_A 130 VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPR 209 (386)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCT
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCC
Confidence 332211 111 1223345556667777777789999999999988774321
Q ss_pred -------cchhhhHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHH
Q 002921 512 -------EELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (865)
Q Consensus 512 -------~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (865)
..+..--..++..|++.+..... .....++.+++.+++. .|.|+..+++.+...
T Consensus 210 nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~------RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 210 DHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ------RPMFMSEVIQAYETL 272 (386)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH------SGGGHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHhh
Confidence 00122234688888888876422 2333455666656554 246788888877654
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.71 E-value=25 Score=36.58 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=101.5
Q ss_pred CCHhHHHHHHHHHhhhhhCCC-hhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchh
Q 002921 86 MSPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (865)
+.++.+..+...|+.+.+.+. ...-.+++.++...+..++. .-..++..|+...--.+..-...-+.-+..+++..++
T Consensus 239 LKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~ 317 (449)
T 2npp_B 239 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 317 (449)
T ss_dssp CCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred CcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 567888888888888776553 34566788888888877632 3345556666655444433333345556666665544
Q ss_pred hcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH--hccccHHhHHhHHHHHHHHHHhhC-----CCCHHH
Q 002921 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF--IMLMPSALFVSMDQYLQGLFLLSN-----DPSAEV 237 (865)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~ 237 (865)
.- |......++..+.+++++++..|-..|+..+.+- +.. +.++-..+++.++..+. +-+..+
T Consensus 318 ~e-------f~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l----i~~n~~~IlPii~p~L~~~s~~HWn~~V 386 (449)
T 2npp_B 318 SE-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMFPSLYRNSKTHWNKTI 386 (449)
T ss_dssp HH-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHHHHHTSCTTCCSSTTH
T ss_pred HH-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH----HHhchhhhHHhhHHHHHHHHHHhcCHHH
Confidence 21 1234567788888999999999988887665321 211 22333445566655442 236779
Q ss_pred HHHHHHHHHHHHhhchhhhh
Q 002921 238 RKLVCAAFNLLIEVRPSFLE 257 (865)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~ 257 (865)
|..+..++..+.+..++.+.
T Consensus 387 ~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 387 HGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHH
Confidence 99999999988887776654
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.47 E-value=1.3 Score=38.22 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC------CCHHHHHHHHHH
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~vr~~a~~~ 203 (865)
.+.+..|.+.+.+.++.+...|+.+|..+++.++..+..++. ...++..+.+.+.+ +++.||..++..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 120 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKILEL 120 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHHHHH
Confidence 467788888899999999999999999999999987644321 26777888888864 578999999999
Q ss_pred HHHHhcccc
Q 002921 204 VNQFIMLMP 212 (865)
Q Consensus 204 l~~~~~~~~ 212 (865)
+..|...++
T Consensus 121 i~~W~~~f~ 129 (149)
T 3g2s_A 121 LYSWTVGLP 129 (149)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHhC
Confidence 999987653
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.07 E-value=1.4 Score=38.08 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC------CCHHHHHHHHHH
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~vr~~a~~~ 203 (865)
.+.+..|.+-+++.++.+...|+.+|..+++.++..+..++. -..++..+.+.+.+ .+..||..++..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 467788888899999999999999999999999987644321 26788888888764 478999999999
Q ss_pred HHHHhcccc
Q 002921 204 VNQFIMLMP 212 (865)
Q Consensus 204 l~~~~~~~~ 212 (865)
+..|....+
T Consensus 111 i~~W~~~f~ 119 (148)
T 1mhq_A 111 LFSWTVWFP 119 (148)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHcC
Confidence 999987653
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.04 E-value=10 Score=32.63 Aligned_cols=78 Identities=8% Similarity=-0.003 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc------cchhhHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~~~~~~~~~l~~l 547 (865)
.-...+..+.+.+.+.++.++..|...+..++++|+..+...+ ..+++.|.+++.. .+..++..+++.+...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 4467788899999999999999999999999999987763322 3566667777753 3446777888888888
Q ss_pred HHHhcc
Q 002921 548 ADAVGF 553 (865)
Q Consensus 548 ~~~~~~ 553 (865)
+...+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 877654
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.74 E-value=4.1 Score=35.88 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 002921 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQF 207 (865)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~~ 207 (865)
=.+.+..|.+.+.+.++.++..|+.+|..+++.++..+..++. -..++..+.+.+.. .++.|+..++..+..|
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva------s~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC------SRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT------SHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh------hHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999999886653321 25566666666665 5789999999999998
Q ss_pred hccc
Q 002921 208 IMLM 211 (865)
Q Consensus 208 ~~~~ 211 (865)
....
T Consensus 124 ~~~f 127 (163)
T 1x5b_A 124 SEEF 127 (163)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8654
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.03 E-value=8.9 Score=33.98 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcC------CCHHHHHHHHHHHHH
Q 002921 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------TNKRVQEAACSAFAT 505 (865)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d------~~~~vr~~a~~al~~ 505 (865)
...+..+.+.++++++.++..|+.++..+.+.+.... ...-.-..+++.+.+.+.. .+..||..+...+..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F---h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF---HNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH---HHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH---HHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 4467788889999999999999999999888875421 0111124556667776652 368999999999988
Q ss_pred HHHHhcc
Q 002921 506 LEEEAAE 512 (865)
Q Consensus 506 l~~~~~~ 512 (865)
.....+.
T Consensus 126 W~~~f~~ 132 (171)
T 1juq_A 126 WTMALPE 132 (171)
T ss_dssp HHHHCTT
T ss_pred HHHHcCC
Confidence 8876543
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.88 E-value=14 Score=31.77 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc------cchhhHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~~~~~~~~~l~~l 547 (865)
.-...+..+.+.+++.++.++..|...+..++++||..+...+ ..+++.|.+++.. .+..++..+++.+...
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999987764433 4677777777764 2446777888888887
Q ss_pred HHHhcc
Q 002921 548 ADAVGF 553 (865)
Q Consensus 548 ~~~~~~ 553 (865)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.62 E-value=12 Score=33.20 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc------cchhhHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~~~~~~~~~l~~l 547 (865)
.-...+..+.+.+++.++.|+..|...+..++++|+..+...+ ..+++.|.+++.. ....++..+++.+...
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999987664322 3566667777753 2346777888888888
Q ss_pred HHHhcc
Q 002921 548 ADAVGF 553 (865)
Q Consensus 548 ~~~~~~ 553 (865)
....+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 877654
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.40 E-value=1.5 Score=37.55 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
.+.+..|.+.+.+.++.+...|+.+|..+++.++..+..++. ...++..+.+.+...++.|+..++..+..|..
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~eva------s~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVC------SRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999886643221 25566667777766789999999999999876
Q ss_pred cc
Q 002921 210 LM 211 (865)
Q Consensus 210 ~~ 211 (865)
..
T Consensus 115 ~f 116 (140)
T 3ldz_A 115 EF 116 (140)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=86.12 E-value=36 Score=35.60 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhccHHH--HHHHHHhccCCCChHHHHHHHHHHHhhHHH
Q 002921 406 WKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (865)
...-..|+.=+|.++...+..- ..+.+ .=..+...+.++++.||..|+.|++.+..+
T Consensus 419 ~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5666677788888888776432 12222 233577889999999999999999887643
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.07 E-value=9 Score=33.64 Aligned_cols=79 Identities=6% Similarity=0.037 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHhc
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~ 552 (865)
.-...+..+.+.|...++.|+..|...+..++++|+..+...+ ..+++.+.+++.. .+..++..+++.+.......+
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467788888999999999999999999999999987664322 3455555566553 344667777888887777766
Q ss_pred cc
Q 002921 553 FE 554 (865)
Q Consensus 553 ~~ 554 (865)
..
T Consensus 129 ~~ 130 (163)
T 1x5b_A 129 KD 130 (163)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 142
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=84.01 E-value=23 Score=33.27 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCC-CcH-HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhH
Q 002921 32 DKSQIWQQLQQYSQFP-DFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHI 109 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~p-~~~-~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~v 109 (865)
.|+-|.+..+.....+ .-+ .++..+.. +...+.|.+|..+++ .....++++..+.+.. ++. .-.+..+
T Consensus 43 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---~~~~E~r~~ai~~l~----~~~k~~~~~~l~~~~~-~l~--~~~nWd~ 112 (232)
T 3jxy_A 43 RRQLLKDIIQIHTLPDQKDFQIIIRELWD---LPEREFQAAALDIMQ----KYKKHINETHIPFLEE-LIV--TKSWWDS 112 (232)
T ss_dssp HHHHHHHHHHHHCCCCGGGHHHHHHHHHT---SSBHHHHHHHHHHHH----HTGGGCCGGGHHHHHH-HHT--SSCCHHH
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhc---CcHHHHHHHHHHHHH----HHHHhCCHHHHHHHHH-HHc--cCCChHH
Confidence 4555555545543321 123 34444443 456789988888775 2334466666665543 332 2456666
Q ss_pred HHHHH-HHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH
Q 002921 110 RSTVG-TIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (865)
Q Consensus 110 r~~~a-~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (865)
-...| .+++.++...+.. +.+.+...+.|++.-.|..|+..+- .. ... .....+++.+...
T Consensus 113 ~D~~a~~~~g~~~~~~p~~----~~~~l~~W~~s~~~w~rR~ai~~~l---~~---~~~--------~d~~~~~~~i~~~ 174 (232)
T 3jxy_A 113 VDSIVPTFLGDIFLKHPEL----ISAYIPKWIASDNIWLQRAAILFQL---KY---KQK--------MDEELLFWIIGQL 174 (232)
T ss_dssp HHHHTTTHHHHHHHHCGGG----GGGTHHHHHHSSCHHHHHHHHHTTT---TC---GGG--------CCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHCHHH----HHHHHHHHhcCCchHHHHHHHHHHH---HH---HhC--------CCHHHHHHHHHHh
Confidence 66664 5777777764321 4466788899999988888875541 11 111 1235677778888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccccHHhHHhH
Q 002921 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (865)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (865)
+.|++.-|+.+...+|..+....|+...+.+
T Consensus 175 ~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 175 HSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8999999999999999999887766555444
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.29 E-value=44 Score=32.99 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=89.1
Q ss_pred HHhhccCChhHHhHHHHHHHHHHh-h--chhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccH
Q 002921 137 VTCLDSNDINHMEGAMDALSKICE-D--IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (865)
Q Consensus 137 ~~~l~~~~~~~r~~al~~L~~l~~-~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~ 213 (865)
.+.+.+.+...+..++.-|..++. + +..+|-.. +. +..+++...+.+...+..++.+|..++.+...
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~---------~G-L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS---------EG-LSCLIRVGAAADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT---------TH-HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh---------cc-HHHHHHHHHhcChHHHHHHHHHHHHHHhcccc
Confidence 344445556666677777777443 2 22222111 12 45667777778899999999999999987321
Q ss_pred --HhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhhhhhHHHH-----------HHHHhhhcC---CCCHH
Q 002921 214 --ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL-----------FEYMLQVNK---DTDDD 277 (865)
Q Consensus 214 --~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l-----------~~~l~~~~~---~~~~~ 277 (865)
.+.. -+.++..+..++.+.+..+.+.+++.|..++...+....-....+ ...++..++ ..|.+
T Consensus 194 m~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 194 MLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred ccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 1222 245677788877777788888999999988887643321111111 123333443 46788
Q ss_pred HHHHHHHHHHHhhcc
Q 002921 278 VALEACEFWHSYFEA 292 (865)
Q Consensus 278 v~~~a~~~l~~l~~~ 292 (865)
+...|+..+..+...
T Consensus 273 lq~~amtLIN~lL~~ 287 (339)
T 3dad_A 273 LLVYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888777665443
No 144
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=81.19 E-value=50 Score=33.54 Aligned_cols=198 Identities=11% Similarity=0.073 Sum_probs=100.9
Q ss_pred HhhhhhhhHHHHH--hh-hhhhhhcccchHHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHH-HHhc
Q 002921 638 VCCLDLLSGLAEG--LG-SGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA-AKQL 713 (865)
Q Consensus 638 ~~al~~l~~l~~~--~~-~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l-~~~l 713 (865)
+-+.+.+-.++.. +. .....|+++ .++--|+..+..+|+..|+..-..+-.+..... ...+++...+..+ .+-+
T Consensus 147 qlVYe~llrfv~s~~f~~~~~k~~id~-~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fi 224 (392)
T 2jak_A 147 QLVYEFFLRFLESPDFQPNIAKKYIDQ-KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFI 224 (392)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCH-HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3444555555443 11 123456765 566667777888999999887777766665442 4445555444332 2222
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhhCCCcccccHH
Q 002921 714 NTPKLKETVSVANNACWAIGELAVKARQEISP-IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHME 792 (865)
Q Consensus 714 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 792 (865)
.... ...--......+|.++....--+++ +..-+...++|+.+... -...-.....|+-......|....+.+.
T Consensus 225 ye~e---~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~--l~~y~~qL~ycv~qf~eKDp~L~~~vi~ 299 (392)
T 2jak_A 225 YETE---HHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKS--LSVYHPQLAYCVVQFLEKDSTLTEPVVM 299 (392)
T ss_dssp TSSC---CCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGG--GGGTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred hccC---CCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCc--HHHhHHHHHHHHHHHHhcCchhHHHHHH
Confidence 2221 1122235566777777665433333 33334556666665432 1122334445555555555544333333
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHhh-CchhhHhhHHHHHHHhhccCCCc
Q 002921 793 HFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA-NPSGALSSLVFMCRAIASWHVRI 847 (865)
Q Consensus 793 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~ 847 (865)
.++.-| |. .+......-+.-+..++.. .|....+....++..++.|-+.+
T Consensus 300 ~LLk~W----P~-tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~ 350 (392)
T 2jak_A 300 ALLKYW----PK-THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP 350 (392)
T ss_dssp HHHHSS----CS-SCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhC----CC-CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333 33 2322333344445555554 45555666666666666666555
No 145
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=77.92 E-value=1.3e+02 Score=36.24 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=87.6
Q ss_pred hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002921 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFA 504 (865)
Q Consensus 425 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~ 504 (865)
..+..+++.++...-..+.+.++.|+.-+..+...+.+++. .-+-.+++..++..+.+.+..-...|...|.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd--------~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~ 463 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD--------TYCQQEVVGALVTHVCSGTEAEVDTALDVLL 463 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Confidence 34567888888877788889999999988777666665542 2334678888888766655444455888888
Q ss_pred HHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhccc
Q 002921 505 TLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (865)
Q Consensus 505 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (865)
.++......+.||.. ++..+++.+++......+.++..++.++-.-+..
T Consensus 464 ~L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~ 512 (1323)
T 3s4w_B 464 ELIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG 512 (1323)
T ss_dssp HHHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 888777777777644 6677778888877777788888888887655443
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.47 E-value=59 Score=32.15 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=64.7
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH-HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcch
Q 002921 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (865)
Q Consensus 396 ~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (865)
+.+.+.+ -+.+.-+++-|..+...-.+....++.. =+..++....+.+......++.+++++..+..... ..
T Consensus 125 ekL~~~~---~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~----gv 197 (339)
T 3dad_A 125 EKLYSSS---GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML----GV 197 (339)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH----HH
T ss_pred HHHhcCC---cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc----ch
Confidence 3344455 5666777777776433211111122211 23334444555688889999999999887644320 01
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (865)
-.....+..+...+.+....|...|...|..++...
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 113456666666667777889889999998888765
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.88 E-value=21 Score=31.08 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHhhc-cCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH-HHHHhc---CCCHHHHHHHHH
Q 002921 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQ---SPHTSLRKLSLG 202 (865)
Q Consensus 128 ~w~~ll~~l~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~---~~~~~vr~~a~~ 202 (865)
.=.+.+..|.+.++ +.++.++..|+.+|..+++.++..+..++. -..++.. +.+.+. +++..||..++.
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva------~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA------SQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh------hHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 33577888888887 478999999999999999999887654321 2566666 566664 345799999999
Q ss_pred HHHHHhcc
Q 002921 203 SVNQFIML 210 (865)
Q Consensus 203 ~l~~~~~~ 210 (865)
.+..|...
T Consensus 124 li~~W~~~ 131 (157)
T 1elk_A 124 LIQSWADA 131 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 148
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=75.67 E-value=20 Score=33.69 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=51.4
Q ss_pred hHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhchhhhHhhHH--HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 002921 663 NLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (865)
Q Consensus 663 ~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~ 737 (865)
.++|++....+++ .+-+|-.+++.+|.+++.....+..|+- +++|.+++.++.. +.-.|..|..-+..+..
T Consensus 101 yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G----selSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 101 FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG----SELSKTVATFILQKILL 174 (268)
T ss_dssp GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH
T ss_pred HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc----cHHHHHHHHHHHHHHhc
Confidence 4777765544443 3568999999999999987777777753 5899999888776 45556666676666653
No 149
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.40 E-value=23 Score=34.36 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHhhccC------ChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~------~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~ 201 (865)
.+..=+..+...+.++ +...-..|+..|..+.-++..-+.- .+.- -.++..++ +....++.+|..|.
T Consensus 19 eFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI-----~~~e-f~lL~nL~-~~~~~~~~~rE~aa 91 (315)
T 3qml_C 19 EFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKI-----ITHE-FALLANLS-LNENLPLTLRELST 91 (315)
T ss_dssp TTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHH-----HHHH-HHHHHHHH-HCTTSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHH-----HhCc-HHHHHHHH-hhccCChhHHHHHH
Confidence 4455555555555554 3345566777776665554332110 0000 12223333 33445778999999
Q ss_pred HHHHHHhccccHHhH---HhHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHhhhc
Q 002921 202 GSVNQFIMLMPSALF---VSMDQYLQGLFLLSN----D---PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (865)
Q Consensus 202 ~~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~----~---~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~ 271 (865)
.+++++.+..|+.+. ...+.++..+|..+. . ....+.+..+.++..|+.....+-...+..|...+ ...
T Consensus 92 rII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly-~~~ 170 (315)
T 3qml_C 92 RVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVY-ERN 170 (315)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHH-HHT
T ss_pred HHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHH-ccC
Confidence 999999999987543 333445555554322 1 23456666777777777664333222233444333 222
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 002921 272 KDTDDDVALEACEFWHSY 289 (865)
Q Consensus 272 ~~~~~~v~~~a~~~l~~l 289 (865)
..+..++..+++.+..+
T Consensus 171 -~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 171 -NKDKQLQIKVLELISKI 187 (315)
T ss_dssp -TTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 44777787777766554
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=75.39 E-value=45 Score=30.95 Aligned_cols=159 Identities=12% Similarity=-0.006 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCC--cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhh-CCChh
Q 002921 32 DKSQIWQQLQQYSQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRH 108 (865)
Q Consensus 32 ~r~~a~~~L~~~~~~p~--~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~-~~~~~ 108 (865)
.|+-|.+..+.....|. -+.++..+.. +..-+.|.+|+.++..... .+.++....+ -..+. -.+-.
T Consensus 37 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---s~~~E~r~la~~~l~~~~~----~~~~~~l~~~----~~~l~~~~nWd 105 (220)
T 2b6c_A 37 RQALSKQLLKESHTWPKEKLCQEIEAYYQ---KTEREYQYVAIDLALQNVQ----RFSLEEVVAF----KAYVPQKAWWD 105 (220)
T ss_dssp HHHHTHHHHHHHTTSCHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHTGG----GCCHHHHHHG----GGGTTTTCSHH
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHc---CchhHHHHHHHHHHHHHHh----hCCHHHHHHH----HHHhccCCcHH
Confidence 56666655544312221 2234444443 4568999999988854321 2344333221 12222 35677
Q ss_pred HHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHH
Q 002921 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (865)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (865)
+-...|.+++.++...+ ..+.+.+.+.+.|++.-.|..|+..+- .. ... ...+.+++.+...
T Consensus 106 ~~D~~a~~~~~~~~~~~----~~~~~~i~~W~~s~~~w~rR~ai~~~l------~~-~~~-------~~~~~~~~i~~~~ 167 (220)
T 2b6c_A 106 SVDAWRKFFGSWVALHL----TELPTIFALFYGAENFWNRRVALNLQL------ML-KEK-------TNQDLLKKAIIYD 167 (220)
T ss_dssp HHHHHHHHHHHHHHHSG----GGHHHHHHHHTTCSSHHHHHHHHHTTT------TC-GGG-------CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCh----HHHHHHHHHHHcCCCHHHHHHHHHHHH------HH-HHC-------CCHHHHHHHHHHh
Confidence 77777777877776532 125677889999999988888876441 11 111 2246677777778
Q ss_pred hcCCCHHHHHHHHHHHHHHhccccHHhHHhH
Q 002921 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (865)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (865)
+.|++.-|+.+...+|..+....|+...+.+
T Consensus 168 ~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 168 RTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8999999999999999999887665544433
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.19 E-value=17 Score=33.85 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~ 206 (865)
.=.+.+..|.+-+.+.++.+...|+.+|..+++.++..+..++. -..++..+.+.+.+ ++..||..++..+..
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva------~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVF------TKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHS------SHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHH------hHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44578888899999999999999999999999999886643321 14566666666553 578999999988888
Q ss_pred Hhcc
Q 002921 207 FIML 210 (865)
Q Consensus 207 ~~~~ 210 (865)
+...
T Consensus 113 W~~~ 116 (220)
T 1dvp_A 113 WAYA 116 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.93 E-value=15 Score=34.29 Aligned_cols=78 Identities=8% Similarity=0.112 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 002921 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (865)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~ 206 (865)
.=.+.+..|.+-+.+.++.+...|+.+|..+++.++..+..++. -..++..+.+++.. +++.|+..++..+..
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia------s~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA------NKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS------SHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc------cHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33678889999999999999999999999999999886543321 24555555555543 578999999999988
Q ss_pred Hhccc
Q 002921 207 FIMLM 211 (865)
Q Consensus 207 ~~~~~ 211 (865)
|....
T Consensus 116 W~~~f 120 (226)
T 3zyq_A 116 WAHAF 120 (226)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 153
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=72.53 E-value=87 Score=31.81 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCCchhhHhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccc
Q 002921 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG 599 (865)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 599 (865)
.++..|+..+++.+...+..+...+..+-...... . +++...+..++-.+....+....+..+++++|.+...+...
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R--~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~P 250 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-R--AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGG-H--HHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC
Confidence 47777888888888777766556555444332111 1 45554444443333332223333567888888888765322
Q ss_pred cccchHH-HHHHHHHHHHHHHHHhhcccccCCCCCcchhHhhhhhhhHHHHHhhhhhhhhcccchHHHHHHHHhcCCChh
Q 002921 600 FTQFAQP-VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASD 678 (865)
Q Consensus 600 ~~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 678 (865)
+..--.. +...++.. ..... -..+-. ++..++...+.++..- . ..++..++++.--++..
T Consensus 251 LKeehk~Fl~~vLlPL-hk~~~------------l~~y~~---qL~ycv~qf~eKDp~L-~--~~vi~~LLk~WP~tns~ 311 (392)
T 2jak_A 251 LKEEHKIFLLKVLLPL-HKVKS------------LSVYHP---QLAYCVVQFLEKDSTL-T--EPVVMALLKYWPKTHSP 311 (392)
T ss_dssp CCHHHHHHHHHTTGGG-GTSGG------------GGGTHH---HHHHHHHHHHHHCGGG-H--HHHHHHHHHSSCSSCCT
T ss_pred CcHHHHHHHHHHhHhh-ccCCc------------HHHhHH---HHHHHHHHHHhcCchh-H--HHHHHHHHHhCCCCCch
Confidence 1111000 11111111 00000 000000 1111111111111110 0 11333444433223333
Q ss_pred HHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 002921 679 VRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACW 730 (865)
Q Consensus 679 vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~ 730 (865)
-...-+.-+++++..++ ..+.+....++..+.+++++. +..|-+.|+.
T Consensus 312 KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~----hfqVAErAL~ 360 (392)
T 2jak_A 312 KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP----HFQVAERALY 360 (392)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS----SHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHH
Confidence 33345566778887776 678888999999999999998 6677666543
No 154
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=69.84 E-value=75 Score=29.94 Aligned_cols=161 Identities=14% Similarity=0.203 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhH---
Q 002921 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN--- 90 (865)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~--- 90 (865)
+.+.+.+.++.+|+ .|..|-..|..-.+ .|+..+.|++-.. .-+.+| +.|-..|..+++..
T Consensus 3 ~~i~qli~~L~~p~---~Re~AL~eLsk~Re~~~~La~~LW~S~G-----------tia~LL-QEIisiYp~lspp~Lt~ 67 (268)
T 2fv2_A 3 EKIYQWINELSSPE---TRENALLELSKKRESVPDLAPMLWHSFG-----------TIAALL-QEIVNIYPSINPPTLTA 67 (268)
T ss_dssp HHHHHHHHHTSSTT---THHHHHHHHHHHTTTCTTHHHHHHHSTT-----------HHHHHH-HHHHHTGGGBTTBCCCH
T ss_pred HHHHHHHHHhcCch---hHHHHHHHHHHhhhccccHHHHHHhccC-----------HHHHHH-HHHHHHcccCCCcccCH
Confidence 46778888888776 68888777766443 5776666666432 223344 34444444443321
Q ss_pred --HHHHHH--HHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHH-HHHHHHhhccCC--hhHHhHHHHHHHHHHhhch
Q 002921 91 --QQYIKS--ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-LQALVTCLDSND--INHMEGAMDALSKICEDIP 163 (865)
Q Consensus 91 --~~~i~~--~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~l-l~~l~~~l~~~~--~~~r~~al~~L~~l~~~~~ 163 (865)
-..+-+ .+++.+.+ ++..|...- ....|-+ .|+ +...+... ...|.+++-+++.+++.-.
T Consensus 68 ~~SnRVcnaLaLlQcvAs-hpetr~~Fl-----------~a~iplyLyPf-L~t~sk~r~fE~LRLtsLGVIgaLvK~dd 134 (268)
T 2fv2_A 68 HQSNRVCNALALLQCVAS-HPETRSAFL-----------AAHIPLFLYPF-LHTVSKTRPFEYLRLTSLGVIGALVKTDE 134 (268)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTTHHHHH-----------HTTGGGGTHHH-HHCCCCSHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHhHHHHHHHHHHHHHc-CcchhhHHH-----------HccchHHhhhh-hccccCCCcchhhhhhHHHHHHHHhccCc
Confidence 111111 12222221 222222211 1233433 344 33333222 3678888989999987533
Q ss_pred hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002921 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (865)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (865)
....+. =.-.+++|..++.+..++.--+..|..++..+..
T Consensus 135 ~eVi~f------LL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 135 QEVINF------LLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHH------HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 321110 0125689999999999998888888888888764
No 155
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=68.99 E-value=24 Score=32.78 Aligned_cols=128 Identities=7% Similarity=0.008 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHHHHHHHHhccCCCC
Q 002921 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (865)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (865)
.|..|..+++....... +..++.+...+..-+ ||......+.+++.+....++ .+.+.+..-..|++
T Consensus 71 ~r~la~~~l~~~~~~~~----~~~l~~~~~~l~~~~--nWd~~D~~a~~~~~~~~~~~~-------~~~~~i~~W~~s~~ 137 (220)
T 2b6c_A 71 YQYVAIDLALQNVQRFS----LEEVVAFKAYVPQKA--WWDSVDAWRKFFGSWVALHLT-------ELPTIFALFYGAEN 137 (220)
T ss_dssp HHHHHHHHHHHTGGGCC----HHHHHHGGGGTTTTC--SHHHHHHHHHHHHHHHHHSGG-------GHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhhCC----HHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHcCCC
Confidence 47777777765443322 233445555555433 399888766656666543332 23455777889999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH
Q 002921 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (865)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~ 518 (865)
..+|+.|+.++ + .+. ...+...+++.+-..+.|++.-||.++.++|..+...-.+.+.+|+
T Consensus 138 ~w~rR~ai~~~--l-~~~--------~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 138 FWNRRVALNLQ--L-MLK--------EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHHHTT--T-TCG--------GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--H-HHH--------HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999987633 2 111 2234455566555578899999999999999887765444444444
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.34 E-value=66 Score=29.92 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHhcc
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~ 553 (865)
-...+..+.+.+++.++.|+..|...|..++++++..+...+ ..+++.|.++++. .+..++..+++.+...+...+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 467888999999999999999999999999999986543221 2344444444443 2345667778877777776644
No 157
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=65.76 E-value=1.1e+02 Score=30.11 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHhchh--hhhhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002921 406 WKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (865)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (865)
...+-.++.++..+..... +.+..+.+.+++.+...+.+++..+|.++..++-+++-..... ...+...+++..
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~----~~~~~~~~ll~~ 237 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD----HNIEGKAQCLSL 237 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS----CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHH
Confidence 4456666666666655432 2334567788888888888889999999988888888776532 112233445555
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHH
Q 002921 484 LLKRILD-TNKRVQEAACSAFATLEE 508 (865)
Q Consensus 484 l~~~l~d-~~~~vr~~a~~al~~l~~ 508 (865)
+...+.. .+.+...++..|+++++.
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 5555543 467788888888888874
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.22 E-value=36 Score=28.71 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHH
Q 002921 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA 709 (865)
Q Consensus 664 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 709 (865)
+++.|..-+++.++.++--|+.+|.-++++.++.|..++..=+..+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I 95 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAV 95 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999988888888877655443
No 159
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=65.14 E-value=64 Score=27.43 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHHHHHHhcCCCHHH
Q 002921 117 VSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (865)
Q Consensus 117 l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 196 (865)
+..+|.. ....-+.++..+.+.+....+..+..++.++..+++.++..+... ..+.+.+.+.......+..+
T Consensus 30 LT~~a~~-~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~-------F~~~l~~~f~~~~~~~d~~~ 101 (144)
T 1sz9_A 30 LTKLAEE-NISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIY-------FSRNLFNLYKRTYLLVDNTT 101 (144)
T ss_dssp HHHHHHH-TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHH-------HHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHH-------HHHHHHHHHHHHHHhCCHHH
Confidence 4444443 234567888888888888889999999999999999887654321 22444555556666678899
Q ss_pred HHHHHHHHHHHhcc
Q 002921 197 RKLSLGSVNQFIML 210 (865)
Q Consensus 197 r~~a~~~l~~~~~~ 210 (865)
|....+.+..|-+.
T Consensus 102 r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 102 RTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999755
No 160
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=64.75 E-value=49 Score=30.97 Aligned_cols=138 Identities=8% Similarity=0.024 Sum_probs=80.4
Q ss_pred hhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhc-cCChhHHhHH-HHHHHHHHhhchhhcccCCCCCCCc
Q 002921 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAEC 176 (865)
Q Consensus 99 l~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~r~~a-l~~L~~l~~~~~~~~~~~~~~~~~~ 176 (865)
..+..++....|-.+...+....+...+ +-++.+...+. -+++.+.... -.+++.++...+.
T Consensus 67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------------ 130 (232)
T 3jxy_A 67 RELWDLPEREFQAAALDIMQKYKKHINE----THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------------ 130 (232)
T ss_dssp HHHHTSSBHHHHHHHHHHHHHTGGGCCG----GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG------------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH------------
Confidence 3344555555666555554432222122 22333333333 3466665543 3455555554322
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccccHHhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhchhhh
Q 002921 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (865)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 256 (865)
.+.+.+...+.+++.-+|+.|+.++..+.. ......++..+...+.+++.-+++++.-+|..+....|+.+
T Consensus 131 ---~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~------~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 131 ---LISAYIPKWIASDNIWLQRAAILFQLKYKQ------KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp ---GGGGTHHHHHHSSCHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---HHHHHHHHHhcCCchHHHHHHHHHHHHHHh------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 245567788899999999998776533221 11222344555566788889999999899999988888877
Q ss_pred hhhHH
Q 002921 257 EPHLR 261 (865)
Q Consensus 257 ~~~l~ 261 (865)
.+++.
T Consensus 202 ~~fl~ 206 (232)
T 3jxy_A 202 WEYVQ 206 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 161
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=62.30 E-value=1.6e+02 Score=30.88 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 002921 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (865)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (865)
.++.+-..||.=+|+++++.+.- ...+. ..-..+++.|.++++.||..|..|+..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~g------r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPES------IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTH------HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcch------hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999987632 22222 235566788899999999999999988764
No 162
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=62.14 E-value=78 Score=27.38 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHH-HHHHhcc---cchhhHHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK---YQRRNLRIVYDAIGTLA 548 (865)
Q Consensus 476 ~~~~~~~~l~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~---~~~~~~~~~~~~l~~l~ 548 (865)
.-...+..+.+.++ ..++.++..|...+..++++|+..+...+ ..+++. |.+.+.. ....++..+++.+....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 44678888999997 47899999999999999999987764422 245555 5566532 22356677788887777
Q ss_pred HHhcc
Q 002921 549 DAVGF 553 (865)
Q Consensus 549 ~~~~~ 553 (865)
...+.
T Consensus 130 ~~f~~ 134 (157)
T 1elk_A 130 DAFRS 134 (157)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 76653
No 163
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=62.13 E-value=69 Score=26.78 Aligned_cols=64 Identities=6% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 002921 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (865)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (865)
.+...+..|+...+.+...+.|++.. ..+.+.++..+.+.+....+.-|....+.+..++.+++
T Consensus 8 ~l~~~L~~L~~s~~sI~~~s~w~l~~--------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 8 ALEKKLSELSNSQQSVQTLSLWLIHH--------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHHCCSSTTHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 44555667777788888888887753 22345566666666665445567888999999988774
No 164
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=60.48 E-value=28 Score=29.44 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=53.1
Q ss_pred HHHHHHHhhh---CcchhhhhHHHHHHhhccCCCcchhHHHHHHHHHHHHHhchhhhhhccHHH---HHHHHHh--ccCC
Q 002921 373 AALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE---IVAFLIP--LLDD 444 (865)
Q Consensus 373 ~~l~~l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---i~~~l~~--~l~d 444 (865)
..+..|++.. +...+..+++.+...+++.+ |.++.-|+.+|.-++..-++.+...+.. ++..+.. ...|
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~---~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKS---PIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCC---cceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 3444444443 33556889999999999988 9999999999999887655544333332 2222221 1112
Q ss_pred ------CChHHHHHHHHHHHhh
Q 002921 445 ------KFPLIRSISCWTLSRF 460 (865)
Q Consensus 445 ------~~~~vr~~a~~~l~~l 460 (865)
+...||.+|-.++.-+
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHH
Confidence 2257888886655533
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.89 E-value=1.1e+02 Score=28.30 Aligned_cols=78 Identities=6% Similarity=0.024 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHhc
Q 002921 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVG 552 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~ 552 (865)
.-...+..+.+.|.+.++.++..|...|..++++++..+...+ ..+++.|.+++++. +..++..+++.+.......+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4467788888999999999999999999999999876553221 22444444544432 34566677777777776655
Q ss_pred c
Q 002921 553 F 553 (865)
Q Consensus 553 ~ 553 (865)
.
T Consensus 119 ~ 119 (220)
T 1dvp_A 119 S 119 (220)
T ss_dssp T
T ss_pred c
Confidence 3
No 166
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=57.22 E-value=83 Score=26.15 Aligned_cols=67 Identities=7% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 002921 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (865)
++..+...+..|+.....++..+.|++.. ..+.+.++..+.+.+....+.-|....+.+..++.++
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h--------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN--------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 34455666777887777888888777753 2334566677777777667778889999999999887
Q ss_pred c
Q 002921 511 A 511 (865)
Q Consensus 511 ~ 511 (865)
+
T Consensus 72 ~ 72 (132)
T 4flb_A 72 K 72 (132)
T ss_dssp T
T ss_pred c
Confidence 4
No 167
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=53.75 E-value=1e+02 Score=26.17 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc
Q 002921 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (865)
Q Consensus 475 ~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (865)
.+...++..+.+.+....+.-|..+++.+.+++++.+.
T Consensus 38 ~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRH 75 (145)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhh
Confidence 45567777777777655677888999999999998865
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=47.85 E-value=30 Score=29.83 Aligned_cols=77 Identities=9% Similarity=0.172 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcc-CChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcchhhhHHH-HHHHhcC---CCHHHHHHHHHHH
Q 002921 130 LELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQS---PHTSLRKLSLGSV 204 (865)
Q Consensus 130 ~~ll~~l~~~l~~-~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~---~~~~vr~~a~~~l 204 (865)
.+.+..|.+.+.+ .++.+...|+.+|..+++.++..+..++. ...++.. +.+.+.+ .+..||..++..+
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eia------sk~Fl~e~L~kl~~~~~~~~~~Vk~kil~li 125 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIV------KKEFVKENLVKLLNPRYNLPLDIQNRILNFI 125 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHHHTTTTGGGGSGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHH------hhHhHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 5677888888874 57777778999999999999987644321 1445543 4555543 3568999999999
Q ss_pred HHHhcccc
Q 002921 205 NQFIMLMP 212 (865)
Q Consensus 205 ~~~~~~~~ 212 (865)
..|....+
T Consensus 126 ~~Wa~~F~ 133 (152)
T 3rru_A 126 KTWSQGFP 133 (152)
T ss_dssp HHHHTCCS
T ss_pred HHHHHHhC
Confidence 99987653
No 169
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=47.70 E-value=1.3e+02 Score=25.72 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccchhhhHH--HHHHH-HHHHhccc---chhhHHHHHHHHHHHH
Q 002921 476 QFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLE--IILQH-LMMAFGKY---QRRNLRIVYDAIGTLA 548 (865)
Q Consensus 476 ~~~~~~~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~---~~~~~~~~~~~l~~l~ 548 (865)
.-...+..+.+.+.. .++.++..|...+..++++|+..+...+. .+++. |.+++... ...++..+++.+...+
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 446788889888985 57888899999999999999877644332 45543 45555432 2246667777777777
Q ss_pred HHhcc
Q 002921 549 DAVGF 553 (865)
Q Consensus 549 ~~~~~ 553 (865)
...+.
T Consensus 130 ~~F~~ 134 (152)
T 3rru_A 130 QGFPG 134 (152)
T ss_dssp TCCSS
T ss_pred HHhCC
Confidence 65543
No 170
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=47.28 E-value=1.3e+02 Score=25.48 Aligned_cols=74 Identities=5% Similarity=-0.031 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH-HHHHHHHHhcccchhhHHHHHHHHHHH
Q 002921 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI-ILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (865)
Q Consensus 474 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~l~~l 547 (865)
..+.+.++..+.+.+....+.-+..+++.+.+++++++..+..++.. +.+.+.......+...+..+...+..-
T Consensus 38 ~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 38 ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556777777777776678899999999999999987655444332 233333333333444444444444433
No 171
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=43.75 E-value=1.5e+02 Score=25.14 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=63.6
Q ss_pred HhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhhcccCCCCCCCcc
Q 002921 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (865)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (865)
-++.|.+..+.+-....+.+..+|... ...-+.++..+.+.+....+..|..++.++..+++.......... + .+
T Consensus 10 ~L~~L~~~k~~~S~~~I~~LT~~a~~~-~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~-~---~f 84 (145)
T 3d9j_A 10 ELYSLNDYKPPISKAKMTQITKAAIKA-IKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEK-D---VF 84 (145)
T ss_dssp HHHGGGGSCSSCCHHHHHHHHHHHHHT-GGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTT-C---SH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCcc-c---cH
Confidence 344454433223344444556666542 335577888888888888889999999999999998877432110 1 12
Q ss_pred hhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHh
Q 002921 178 INIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFI 208 (865)
Q Consensus 178 ~~~l~~~l~~~l~---~~~~~vr~~a~~~l~~~~ 208 (865)
.+.+.+.+.+.+. ..++..|....+.+..|-
T Consensus 85 ~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 85 APRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 2333333333221 234777888888887775
No 172
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=36.60 E-value=89 Score=29.26 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=48.3
Q ss_pred hhHHHHHHhhccCCCcchhHHHHHHHHHH-HHHhchhhh-hhccHHHHHHHHHhccCCCChHHHHHHHHHHHhhHHHHh
Q 002921 389 TLMPVIQAKLSASGDEAWKDREAAVLALG-AIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (865)
Q Consensus 389 ~~~~~l~~~l~~~~~~~~~~r~~a~~~l~-~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (865)
...+.+...+.|++. |..|. |+..-+ .++....+. -...++.++..+...+.|++..|+.+..|+|..++...+
T Consensus 108 ~~~~~~~~W~~s~~~--w~rR~-ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 108 IAQDVADKWIASGDE--LKMSA-GWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SHHHHHHHHHHSCCH--HHHHH-HHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHcCcHH--HHHHH-HHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 345667777777773 55554 444221 112112121 135667778888889999999999999999998888643
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=32.19 E-value=3.6e+02 Score=26.23 Aligned_cols=146 Identities=10% Similarity=-0.027 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhh
Q 002921 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (865)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (865)
.++..+...+.++. .+..+--++.+++++..+.. ..+.....++++.+...+..+ +++++-.+...+-.++.
T Consensus 147 ~l~~~l~~~~~~~~---~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~---nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 147 QFSSHLINLLNPKG---KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS---NKNIHIALATLALNYSV 220 (304)
T ss_dssp HHHHHHHHTTCTTS---CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC---ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHH
Confidence 34444555554431 33334455555555544322 112234556666666555433 35566555555444443
Q ss_pred ---hCCCcccccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCchhhH-----hhHHHHHHHhhccCCCccHHHHH
Q 002921 782 ---VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL-----SSLVFMCRAIASWHVRITLHLIL 853 (865)
Q Consensus 782 ---~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~ 853 (865)
..++ .+...+++..+...+...+|.|..-..+.++.+++...+. +. -.+...+..+.+-++++.+.+..
T Consensus 221 ~~~~~~~--~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~-~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 221 CFHKDHN--IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSN-AVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp HHHHSCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred HHhhcCC--chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChh-HHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 2222 1234456666666666666777777788888888876442 22 13455566666665544588888
Q ss_pred HHHHh
Q 002921 854 LSVIF 858 (865)
Q Consensus 854 ~~~~~ 858 (865)
+.++-
T Consensus 298 ~~~~~ 302 (304)
T 3ebb_A 298 RFILN 302 (304)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87764
No 174
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=31.44 E-value=2.2e+02 Score=23.47 Aligned_cols=88 Identities=9% Similarity=0.037 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcccCC
Q 002921 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (865)
Q Consensus 477 ~~~~~~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (865)
++..+...+..|+.....++..+.+++... .+.+.|+..+.+.+.....+.+...+-.+..++..++....
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~---------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~ 76 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIENK---------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNA 76 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccCh
Confidence 345555566667665566776666665432 24567777777777766656566777888888887765432
Q ss_pred chhhHhhhhHHHHHHHhc
Q 002921 557 QPVYLDILMPPLIAKWQQ 574 (865)
Q Consensus 557 ~~~~~~~l~~~l~~~l~~ 574 (865)
. .|...+.+.+...+..
T Consensus 77 ~-~f~~~f~~~l~~~~~~ 93 (132)
T 4flb_A 77 I-IFRESFADVLPEAAAL 93 (132)
T ss_dssp T-HHHHHHHTTHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHH
Confidence 1 4544444444444444
No 175
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.71 E-value=2.2e+02 Score=23.42 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred CChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHh-hhcc-cCCCHHHHHHHHHHHHHHHHhhhCcC
Q 002921 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-LARA-EGKSVEIRQAAGLLLKNNLRTAYKSM 86 (865)
Q Consensus 9 ~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~i-l~~~-~~~~~~~R~~a~~~L~~~i~~~w~~~ 86 (865)
|.++....+..+|..-.+.. ..+.|...++++. .|.|...+... +... ...++..|...+.+|+...... .+
T Consensus 2 p~eel~kki~~ll~EY~~~~---D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~--~i 75 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSG---DISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS--TI 75 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT--CS
T ss_pred cHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC--Cc
Confidence 55666667777777776654 3467888888875 34443322221 1100 0223467888888888776542 36
Q ss_pred CHhHHHHHHHHHhhhhhC---CChhHHHHHHHHHHHHHHh
Q 002921 87 SPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (865)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~ 123 (865)
+.++...-...++..+.| .-|.....++..++.....
T Consensus 76 s~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 76 TIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHC
Confidence 776666555666666654 4566777777777766654
No 176
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.37 E-value=2.6e+02 Score=23.89 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHH----HHhhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 002921 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYL----AFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (865)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l----~~il~~~~~~~~~~R~~a~~~L~~~i~~~w 83 (865)
.|.++....+..+|..-.+.. ..+.|...++++.. |.|...+ +..... ..+...|...+.+|+.+....
T Consensus 3 ~~~eel~kki~~lL~EY~~~~---D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE--~~~~~~re~~~~LL~~L~~~~- 75 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSG---DISEAEHCLKELEV-PHFHHELVYEAIVMVLE--STGESAFKMILDLLKSLWKSS- 75 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHhCC-CcchHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHCC-
Confidence 466666777888888877655 34678888888753 4443222 222111 223567888888888776542
Q ss_pred CcCCHhHHHHHHHHHhhhhhC---CChhHHHHHHHHHHHHHHh
Q 002921 84 KSMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (865)
Q Consensus 84 ~~~~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~ 123 (865)
.++.++...-...++..+.| ..|.....++..++.....
T Consensus 76 -~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 76 -TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred -CcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHC
Confidence 36776665555666666554 4566777777777766654
No 177
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=27.05 E-value=3.1e+02 Score=25.43 Aligned_cols=78 Identities=10% Similarity=-0.079 Sum_probs=52.7
Q ss_pred hcCCCcHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH-hhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHH
Q 002921 44 SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR-TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122 (865)
Q Consensus 44 ~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~-~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~ 122 (865)
.+.|.....+..-+. +.+.=.|.+|.+.....+. .....++......+...+-..+.+++..|+.+++-+++.+..
T Consensus 104 ~~~~~~~~~~~~W~~---s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 104 SESNIAQDVADKWIA---SGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp TTSSSHHHHHHHHHH---SCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHc---CcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 345555555555544 5677777788772222222 222345667777777777778889999999999999999998
Q ss_pred hc
Q 002921 123 LG 124 (865)
Q Consensus 123 ~~ 124 (865)
..
T Consensus 181 ~~ 182 (235)
T 1t06_A 181 SY 182 (235)
T ss_dssp HC
T ss_pred hC
Confidence 75
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=24.75 E-value=4.4e+02 Score=26.66 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=42.4
Q ss_pred ChhHHhHHHHHHHHHHhhch---hhcccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002921 144 DINHMEGAMDALSKICEDIP---QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (865)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (865)
+....+..++||..+...-. ..+.. +..+..+...+.++.+.+|..|++.|..++.+.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~----------~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLET----------EEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTC----------SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcC----------hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 34566778888888865421 22221 456788888999999999999999999888664
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.43 E-value=5.3e+02 Score=26.10 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHhccccH--HhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhch-hh-hhhhHHHH-----
Q 002921 193 HTSLRKLSLGSVNQFIMLMPS--ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SF-LEPHLRNL----- 263 (865)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~-~~~~l~~l----- 263 (865)
+......++.||..++.+-.. .+.. -+..+..+...+..+...+|..+++.|..++.... +- ....+..+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 557788899999998765211 1111 12346677777777888999999999998886543 11 11112221
Q ss_pred ------HHHHhhhcCC-CCHHHHHHHHHHHHHhhcc
Q 002921 264 ------FEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (865)
Q Consensus 264 ------~~~l~~~~~~-~~~~v~~~a~~~l~~l~~~ 292 (865)
+..++..+.+ .+.+.+..++.++..++..
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 1122233333 4556666667776666554
No 180
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.00 E-value=8.2e+02 Score=26.51 Aligned_cols=103 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred cHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhc----
Q 002921 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---- 124 (865)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~---- 124 (865)
+.+.+..+... ++..+.|..|..+++..|.+ ++++.|-.+...|+. +...+.++..+...+..-....
T Consensus 366 ~~q~L~~v~~~--~P~~~lR~~a~~vl~~~I~~----~~~e~R~~iL~~LL~--~~~~~~v~~~lI~~~KdeI~~al~~~ 437 (596)
T 4f52_E 366 VPQGLVKVMTL--CPIETLRKKSLAMLQLYINK----LDSQGKYTLFRCLLN--TSNHSGVEAFIIQNIKNQIDMSLKRT 437 (596)
T ss_dssp HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHH----BCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHh----CChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhcC
Q ss_pred CcCCh---HHHHHHHHHhhccCCh---------hHHhHHHHHHHHHH
Q 002921 125 GIAGW---LELLQALVTCLDSNDI---------NHMEGAMDALSKIC 159 (865)
Q Consensus 125 ~~~~w---~~ll~~l~~~l~~~~~---------~~r~~al~~L~~l~ 159 (865)
..+.| |.+++.+...+.-++. ....+|+.+++.++
T Consensus 438 ~~~~~F~~~~l~~ll~~vl~lp~g~~tDL~~~~d~I~aaLNLlr~Ll 484 (596)
T 4f52_E 438 RNNKWFTGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLV 484 (596)
T ss_dssp ---CTTTSHHHHHHHHHHSCCTTTTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHhcCCCCCCCchhhhhHHHHHHHHHHHHHH
No 181
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.94 E-value=5.8e+02 Score=24.76 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=71.8
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhchhhhH-------hhHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 002921 671 CCMDDASDVRQSAFALLGDLARVCPVHLQ-------ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (865)
Q Consensus 671 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~l~~l~~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 743 (865)
|....+..+|+.|..+|+...++.+..+. .|+..+++.+.......+.. ...+...-+..+-.|+... .+|
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~-~~F 155 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTS-EDL 155 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCS-TTC
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcCh-Hhh
Confidence 44556778999999999999999886554 56666777665544332110 1122333333333333332 345
Q ss_pred cchHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHhhhhh---------------CCCcccccHHHHHHHHHHHhccCC-C
Q 002921 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV---------------CPELVSPHMEHFMQPWCIALSMIR-D 807 (865)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~---------------~~~~~~~~~~~~l~~~~~~l~~~~-~ 807 (865)
..+-...+..+++.... .+.++..++..+.++-.. .-+.-.|-+......+-..++++. |
T Consensus 156 ~~~~m~~L~~ly~~~~~----d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~d 231 (315)
T 3qml_C 156 PIYSTVVLQNVYERNNK----DKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSID 231 (315)
T ss_dssp --CCHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCTTSC
T ss_pred hhccHHHHHHHHccCCC----CHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhccccC
Confidence 44433344445554311 233444444444444321 000001222112222222333333 3
Q ss_pred hHHHHHHHHHHHHHHhhCc
Q 002921 808 DTEKEDAFRGLCAMVKANP 826 (865)
Q Consensus 808 ~~~~~~~~~~l~~l~~~~~ 826 (865)
....+..|..|.++=+.++
T Consensus 232 E~~~r~fF~~L~~ik~~~~ 250 (315)
T 3qml_C 232 ELHTRTFFDTLYNLKKIFK 250 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3367778888888877653
No 182
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=20.86 E-value=3.7e+02 Score=22.50 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHh
Q 002921 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEA 510 (865)
Q Consensus 433 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~al~~l~~~~ 510 (865)
+.+...+..|+.....+...+.|++.. ....+.++..+.+.+... .+.-|....+.+..++.++
T Consensus 6 ~~l~~kL~~L~~sq~sIq~~s~W~l~h--------------~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqns 71 (142)
T 2km4_A 6 EQFTTKLNTLEDSQESISSASKWLLLQ--------------YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQA 71 (142)
T ss_dssp HHHHHHHHTCCSCHHHHHHHHHHHHTC--------------GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh--------------hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHH
Confidence 345556678888778888888777742 334567777788878764 5677888889899999877
Q ss_pred c
Q 002921 511 A 511 (865)
Q Consensus 511 ~ 511 (865)
.
T Consensus 72 k 72 (142)
T 2km4_A 72 K 72 (142)
T ss_dssp G
T ss_pred h
Confidence 4
No 183
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=20.44 E-value=3.7e+02 Score=22.32 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred CCHhHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHhcCcCChHHHHHHHHHhhccCChhHHhHHHHHHHHHHhhchhh
Q 002921 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (865)
Q Consensus 86 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (865)
+..+....+...|+.-|.|.+-.+...++..+...- +.++|.+.+.++++|..=+ .-+|..++..++..
T Consensus 24 ~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~ 92 (134)
T 3ut4_A 24 LIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP 92 (134)
T ss_dssp CCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH
Confidence 566777778889999999999999877766665421 5788999999988775332 33455555555543
Q ss_pred cccCCCCCCCcchhhhHHHHHHHhcCC-----CHHHHHHHHHHHHHH
Q 002921 166 LDSDVPGLAECPINIFLPRLLQFFQSP-----HTSLRKLSLGSVNQF 207 (865)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~vr~~a~~~l~~~ 207 (865)
....+.+.+.++..++ ..++...|-+.|..+
T Consensus 93 -----------~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 93 -----------NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp -----------HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 2467788888888775 346777777777665
No 184
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.04 E-value=4.3e+02 Score=22.87 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHhhhCcCCHhHH
Q 002921 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (865)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~-~~~~~~~~R~~a~~~L~~~i~~~w~~~~~~~~ 91 (865)
....+..++..-.+... -+.|...++++.. |++...+...+.+ .-+..+..|..++.+|... .. ..++.++.
T Consensus 9 ~~kk~~~ii~EYf~~~D---~~Ea~~~l~eL~~-p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L-~~--~~ls~~~i 81 (165)
T 2rg8_A 9 FEKTLTPIIQEYFEHGD---TNEVAEMLRDLNL-GEMKSGVPVLAVSLALEGKASHREMTSKLLSDL-CG--TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHHHHCC---HHHHHHHHHHHTC-SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH-BT--TTBCHHHH
T ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHHHhCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH--CCCCHHHH
Confidence 33445666666655542 3677777777653 4443333332211 1144678899999999875 32 56788776
Q ss_pred HHHHHHHhhhhhC---CChhHHHHHHHHHHHHHHhc
Q 002921 92 QYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (865)
Q Consensus 92 ~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~~ 124 (865)
..-...++..+.| ..|.+-..++..++.....+
T Consensus 82 ~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~ 117 (165)
T 2rg8_A 82 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 117 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcC
Confidence 6666666666654 46777788888888777654
Done!