BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002923
         (865 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
           From Homo Sapiens At 1.55 A Resolution
 pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
           From Homo Sapiens At 1.55 A Resolution
          Length = 130

 Score = 36.2 bits (82), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           L HPS+SR+H  +Q   S           G C        +L   GS       HGT+++
Sbjct: 55  LEHPSVSRYHAVLQHRASG--------PDGECDSNG-PGFYLYDLGS------THGTFLN 99

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVYRLH 91
           + +I P     +  G  ++ GGSTR++ L 
Sbjct: 100 KTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 129


>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
          Length = 145

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 58  TWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRL 90
           T+++E  IEP    E+ E DT+K G S+R Y L
Sbjct: 96  TYINESPIEPQRYYELFEKDTIKFGNSSREYVL 128


>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
          Length = 140

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 24/93 (25%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           + H S SR H  +  +    ++ +IDL+S                         HGT++ 
Sbjct: 70  IDHQSCSRVHAALVYHKHLKRVFLIDLNS------------------------THGTFLG 105

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVP 94
             ++EP  P ++    T+  G STR Y L   P
Sbjct: 106 HIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 138


>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
           Staphylococcus Aureus Sar2028, An
           Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
           Dependent Aminotransferase
 pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
           Staphylococcus Aureus Sar2028, An
           Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
           Dependent Aminotransferase
          Length = 430

 Score = 31.6 bits (70), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 88  YRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVE 147
           Y  HW    QAYD N+ +   + + +V+ + L +    +     + +    I    S VE
Sbjct: 356 YHSHW----QAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVE 411

Query: 148 GEKIRNCQDEISAAIQD 164
            + I +  D I+ AI D
Sbjct: 412 KDDIPHVFDSIAKAIDD 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,384,320
Number of Sequences: 62578
Number of extensions: 984362
Number of successful extensions: 1999
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 19
length of query: 865
length of database: 14,973,337
effective HSP length: 107
effective length of query: 758
effective length of database: 8,277,491
effective search space: 6274338178
effective search space used: 6274338178
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)