BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002923
         (865 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1
           PE=2 SV=1
          Length = 389

 Score = 38.1 bits (87), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           + HPS S+ H   Q         +++ +  +  +   V  ++   GS       +GT+++
Sbjct: 285 IDHPSCSKQHAVFQ-------YRLVEYTRADGTVGRRVKPYIIDLGSG------NGTFLN 331

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVYRL 90
            K+IEP    E+ E D LK G S+R Y L
Sbjct: 332 NKRIEPQRYYELKEKDVLKFGFSSREYVL 360


>sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1
          Length = 796

 Score = 37.7 bits (86), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           L HPS+SR+H  +Q   S           G C        +L   GS       HGT+++
Sbjct: 201 LEHPSVSRYHAVLQHRASG--------PDGECDSNG-PGFYLYDLGS------THGTFLN 245

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVYRLH 91
           + +I P     +  G  ++ GGSTR++ L 
Sbjct: 246 KTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 275


>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1
           SV=1
          Length = 383

 Score = 37.7 bits (86), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           + HPS S+ H   Q         +++ +  +  +   V  ++   GS       +GT+++
Sbjct: 281 IDHPSCSKQHAVFQ-------YRLVEYTRADGTVGRRVKPYIIDLGSG------NGTFLN 327

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVYRL 90
            K+IEP    E+ E D LK G S+R Y L
Sbjct: 328 NKRIEPQRYYELKEKDVLKFGFSSREYVL 356


>sp|Q12104|SWT1_YEAST Transcriptional protein SWT1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=SWT1 PE=1 SV=1
          Length = 458

 Score = 37.4 bits (85), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 36/165 (21%)

Query: 628 VVDTSTLLDKESRKSLQLLQGLKGTQ---LVIPRMVTRELDCLKQRGNLFRRKSQVSSLL 684
           VVDT+ ++      +L+ L+ L  T    +++P  V +ELD LK+  ++ R     ++  
Sbjct: 133 VVDTNFII--SHLNTLEKLRSLSSTYHHLIIVPTTVIQELDGLKKSPDIARDNDDTTNQ- 189

Query: 685 EWIEECMVKTKW---WIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVS 741
           E         +W   WI+                   ++  ++ SG        L + ++
Sbjct: 190 EHDRTIGTLARWGNDWIY-------------------KNLANLDSGLI---GQKLKQSLN 227

Query: 742 PTS--EDHILDCALLFRKMKNDRCLV-LLSNDVTMKIKAMAEGLI 783
           P S  +D ILDC L F+++ N  C V LLSND  +  KA+ E ++
Sbjct: 228 PGSLKDDSILDCCLYFKEILN--CFVILLSNDKNLCTKALTEDIL 270


>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1
           SV=1
          Length = 396

 Score = 37.4 bits (85), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           + HPS S+ H   Q         +++ +  +  +   V  ++   GS       +GT+++
Sbjct: 294 IDHPSCSKQHAVFQ-------YRLVEYTRADGTVGRRVKPYIIDLGSG------NGTFLN 340

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVY 88
            K+IEP    E+ E D LK G S+R Y
Sbjct: 341 NKRIEPQRYYELKEKDVLKFGFSSREY 367


>sp|P78329|CP4F2_HUMAN Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1
           SV=1
          Length = 520

 Score = 33.9 bits (76), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 37/75 (49%)

Query: 321 VLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAENQSASRRDHRRNEI 380
           +LKP+ +I N+  + +   W+ + ++ SAC D   H + +  D  +    S   H + + 
Sbjct: 159 ILKPYMKIFNESVNIMHAKWQLLASEGSACLDMFEHISLMTLDSLQKCVFSFDSHCQEKP 218

Query: 381 PSFDSGVLEAESVNS 395
             + + +LE  ++ S
Sbjct: 219 SEYIAAILELSALVS 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,393,473
Number of Sequences: 539616
Number of extensions: 13713973
Number of successful extensions: 30577
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 30478
Number of HSP's gapped (non-prelim): 205
length of query: 865
length of database: 191,569,459
effective HSP length: 126
effective length of query: 739
effective length of database: 123,577,843
effective search space: 91324025977
effective search space used: 91324025977
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)