Query 002923
Match_columns 865
No_of_seqs 325 out of 850
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dok_A Telomerase-binding prot 99.9 4.1E-28 1.4E-32 237.6 5.7 149 621-793 9-182 (186)
2 2hwy_A Protein SMG5; RNA degra 99.8 4.8E-22 1.6E-26 194.7 7.0 137 624-793 2-159 (164)
3 4h87_A Kanadaptin; FHA domain 99.7 4.9E-18 1.7E-22 159.4 8.8 67 1-91 54-129 (130)
4 2jpe_A Nuclear inhibitor of pr 99.5 7.4E-15 2.5E-19 138.3 4.2 70 1-94 69-138 (140)
5 3els_A PRE-mRNA leakage protei 99.5 1.4E-14 4.9E-19 140.4 6.1 69 1-93 84-156 (158)
6 3elv_A PRE-mRNA leakage protei 99.5 2.5E-14 8.7E-19 144.5 6.3 69 1-93 131-203 (205)
7 1uht_A Expressed protein; FHA 99.4 2.7E-13 9.3E-18 123.7 8.2 68 1-94 47-115 (118)
8 3va4_A Mediator of DNA damage 99.4 6.6E-13 2.3E-17 125.1 8.6 70 1-94 58-129 (132)
9 2pie_A E3 ubiquitin-protein li 99.3 6.9E-13 2.4E-17 124.8 6.2 85 1-112 41-134 (138)
10 2csw_A Ubiquitin ligase protei 99.3 6.7E-13 2.3E-17 126.0 4.3 85 1-110 49-140 (145)
11 3gqs_A Adenylate cyclase-like 99.3 3.6E-12 1.2E-16 114.6 8.3 64 1-91 39-102 (106)
12 3po8_A RV0020C protein, putati 99.3 4.7E-12 1.6E-16 112.5 8.7 62 1-91 36-97 (100)
13 3huf_A DNA repair and telomere 99.3 3E-12 1E-16 136.6 8.1 74 2-99 38-120 (325)
14 1mzk_A Kinase associated prote 99.3 3.8E-12 1.3E-16 119.9 7.7 67 1-91 45-119 (139)
15 2jqj_A DNA damage response pro 99.3 6.9E-12 2.4E-16 119.6 7.8 65 1-92 51-121 (151)
16 1lgp_A Cell cycle checkpoint p 99.3 5.7E-12 1.9E-16 114.5 6.8 65 2-91 38-109 (116)
17 1gxc_A CHK2, CDS1, serine/thre 99.2 7.7E-12 2.6E-16 119.2 7.7 61 6-91 75-139 (149)
18 1dmz_A Protein (protein kinase 99.2 4.6E-12 1.6E-16 122.2 6.0 66 1-91 40-123 (158)
19 1g6g_A Protein kinase RAD53; b 99.2 2E-11 6.8E-16 113.3 8.8 65 1-91 49-118 (127)
20 1qu5_A Protein kinase SPK1; FH 99.2 8.5E-12 2.9E-16 123.4 6.7 67 1-92 64-148 (182)
21 1r21_A Antigen KI-67; beta san 99.2 1.1E-11 3.9E-16 114.6 6.5 61 1-89 46-106 (128)
22 2xt9_B Putative signal transdu 99.2 2.3E-11 8E-16 110.9 7.8 60 1-89 44-103 (115)
23 1g3g_A Protien kinase SPK1; FH 99.2 2.9E-11 9.8E-16 117.2 8.6 65 1-91 77-146 (164)
24 3ix7_A Uncharacterized protein 99.2 3.1E-11 1.1E-15 115.0 8.1 123 625-793 6-128 (134)
25 2kb3_A Oxoglutarate dehydrogen 99.2 4.5E-11 1.6E-15 114.0 8.1 60 1-89 79-138 (143)
26 1wln_A Afadin; beta sandwich, 99.2 7.8E-11 2.7E-15 108.3 9.2 62 1-91 51-112 (120)
27 3hx1_A SLR1951 protein; P74513 99.1 7.2E-11 2.5E-15 110.8 7.8 62 1-89 43-112 (131)
28 2kfu_A RV1827 PThr 22; FHA dom 99.1 9.3E-11 3.2E-15 114.3 7.4 59 1-88 88-146 (162)
29 3oun_A Putative uncharacterize 99.1 1.1E-10 3.6E-15 113.8 7.5 59 1-88 98-156 (157)
30 4ejq_A Kinesin-like protein KI 99.1 9.7E-11 3.3E-15 112.7 7.2 64 1-91 77-142 (154)
31 2ff4_A Probable regulatory pro 99.0 4.4E-10 1.5E-14 120.4 7.7 61 1-89 319-379 (388)
32 3fm8_A Kinesin-like protein KI 98.8 8.8E-09 3E-13 96.7 9.0 62 1-91 61-122 (124)
33 3i8o_A KH domain-containing pr 98.8 5.3E-09 1.8E-13 100.8 7.5 124 625-786 4-129 (142)
34 1o4w_A PIN (PILT N-terminus) d 98.6 1.6E-08 5.3E-13 95.1 2.5 111 626-789 25-137 (147)
35 3uv0_A Mutator 2, isoform B; F 98.3 4.5E-07 1.5E-11 83.3 5.7 58 2-90 35-99 (102)
36 3kt9_A Aprataxin; FHA domain, 98.2 3E-06 1E-10 77.6 8.5 66 2-92 35-100 (102)
37 2brf_A Bifunctional polynucleo 98.1 7.8E-06 2.7E-10 76.0 8.0 65 2-91 41-105 (110)
38 2wp8_J Exosome complex exonucl 97.9 1.1E-05 3.6E-10 97.1 7.2 136 622-795 59-202 (977)
39 1yj5_C 5' polynucleotide kinas 97.9 2.9E-05 9.9E-10 75.2 8.3 68 2-94 41-108 (143)
40 4a0e_A YSCD, type III secretio 97.8 2.5E-05 8.6E-10 73.9 6.2 61 1-91 38-98 (123)
41 3i6u_A CDS1, serine/threonine- 97.8 2.8E-05 9.5E-10 82.8 7.3 65 2-91 42-119 (419)
42 1ujx_A Polynucleotide kinase 3 97.8 1.4E-05 4.9E-10 75.2 4.4 67 2-93 48-114 (119)
43 4egx_A Kinesin-like protein KI 97.8 4.8E-05 1.6E-09 75.6 8.4 63 1-91 107-172 (184)
44 1wv3_A Similar to DNA segregat 96.8 0.00084 2.9E-08 68.8 4.4 53 11-89 111-167 (238)
45 2lcq_A Putative toxin VAPC6; P 96.1 0.0009 3.1E-08 64.3 0.1 39 743-788 84-122 (165)
46 1v96_A Hypothetical protein PH 94.5 0.052 1.8E-06 49.7 6.1 43 743-794 96-140 (149)
47 2fe1_A Conserved hypothetical 92.3 0.095 3.3E-06 49.2 4.0 34 743-783 123-156 (156)
48 2h1c_A Trafficking protein B; 83.6 0.47 1.6E-05 42.0 2.2 61 627-690 2-66 (139)
49 3zvk_A VAPC2, toxin of toxin-a 76.4 0.69 2.4E-05 41.4 0.8 41 627-667 3-47 (134)
50 3tnd_A TRNA(FMet)-specific end 75.8 0.82 2.8E-05 40.8 1.1 40 627-667 4-46 (132)
51 1w8i_A Putative VAPC ribonucle 71.3 1.3 4.3E-05 41.2 1.3 41 627-667 3-52 (156)
52 1uil_A Double-stranded RNA-bin 70.3 0.66 2.2E-05 42.9 -0.9 70 177-247 32-104 (113)
53 3dbo_B Uncharacterized protein 61.7 4.1 0.00014 38.6 2.7 39 626-666 22-60 (150)
54 3h87_A Putative uncharacterize 59.0 3.4 0.00012 39.6 1.6 42 625-666 19-61 (156)
55 1v8p_A Hypothetical protein PA 56.2 3.4 0.00012 39.6 1.1 46 619-667 22-67 (158)
56 3mml_A Allophanate hydrolase s 38.4 21 0.00072 38.6 3.9 34 58-91 83-119 (318)
57 1ekz_A DSRBDIII, maternal effe 29.0 14 0.00047 31.2 0.4 57 177-239 13-73 (76)
58 3oep_A Putative uncharacterize 25.2 39 0.0014 38.5 3.4 34 58-91 300-336 (494)
59 2k6p_A Uncharacterized protein 23.3 91 0.0031 26.8 4.6 36 55-92 25-60 (92)
60 2k5p_A THis protein, thiamine- 20.1 46 0.0016 28.7 2.0 24 58-81 37-62 (78)
No 1
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=99.94 E-value=4.1e-28 Score=237.62 Aligned_cols=149 Identities=24% Similarity=0.302 Sum_probs=111.1
Q ss_pred CCccEEEEEccceeccCCCchhHHHhhcccC---ceEEEehhHHHHHhccccCCccc--------chhhHHHHHHHHHHH
Q 002923 621 GRRGWTVVVDTSTLLDKESRKSLQLLQGLKG---TQLVIPRMVTRELDCLKQRGNLF--------RRKSQVSSLLEWIEE 689 (865)
Q Consensus 621 ~~rkk~fVLDTNVLLhdeslk~L~lL~~fke---~~VVIPiiVLEELDgLKKg~~l~--------rra~~ARrALrwLee 689 (865)
..++++||||||||||+ |.+|+.|.+ +.||||++||+|||+||++.+.. ..+..||+|++||++
T Consensus 9 ~~~~~~~VlDTNvLl~~-----~~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~ 83 (186)
T 2dok_A 9 EIRPLFLVPDTNGFIDH-----LASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQ 83 (186)
T ss_dssp EEEEEEEEECHHHHHHH-----HHHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCEEEEEhHHHHcC-----HHHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHH
Confidence 44678999999999999 888888864 99999999999999999987621 124579999999999
Q ss_pred HHhccccceeccCcccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcC---------
Q 002923 690 CMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKN--------- 760 (865)
Q Consensus 690 ~l~k~~~~IhVQSs~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~--------- 760 (865)
++.....+|++|+.. |..+.. ..+.... .......|||+||+||++|++.++
T Consensus 84 ~~~~~~~~i~~~~~~--g~~l~~-------v~~~~~~----------~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~ 144 (186)
T 2dok_A 84 RFESRDSCLRALTSR--GNELES-------IAFRSED----------ITGQLGNNDDLILSCCLHYCKDKAKDFMPASKE 144 (186)
T ss_dssp HHHTTCTTEEEECTT--SCEESC-------CTTCCCC----------C----CCHHHHHHHHHHTTCCCCGGGGCCC---
T ss_pred HHhhCCCeEEEEecc--Cccccc-------ccccccc----------cccCCCCccHHHHHHHHHHHHhccccccccccc
Confidence 887766788887653 222110 0000000 011245899999999999976532
Q ss_pred -----CCcEEEEECChhhhhhhhcCCccccchhhHHHh
Q 002923 761 -----DRCLVLLSNDVTMKIKAMAEGLICETAQEFRES 793 (865)
Q Consensus 761 -----~~~VVLVTkDiNLRIKA~AeGI~AEd~eeF~ds 793 (865)
..+|||||||+|||+||.+.||+++++.+|.++
T Consensus 145 ~~~~~~~~vvLvTnD~nLr~KA~~~Gi~~~~~~~~~~~ 182 (186)
T 2dok_A 145 EPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTW 182 (186)
T ss_dssp CCCEEEEEEEEECCCHHHHHHHHHTTCCEECHHHHHHH
T ss_pred ccccCCCcEEEEeCcHHHHHHHHHCCCeeCcHHHHHHH
Confidence 347999999999999999999999999999865
No 2
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=99.85 E-value=4.8e-22 Score=194.70 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=92.4
Q ss_pred cEEEEEccceeccCCCchhHHHhhcc---cCceEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHHHhccccceec
Q 002923 624 GWTVVVDTSTLLDKESRKSLQLLQGL---KGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHI 700 (865)
Q Consensus 624 kk~fVLDTNVLLhdeslk~L~lL~~f---ke~~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~l~k~~~~IhV 700 (865)
+.+||+|||||||| +..|..| ++++||||++||+|||+||++.. .||+|++||++++.+.+++|+.
T Consensus 2 s~ylVlDTN~Li~~-----l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~------~AR~Air~Le~~~~~~~~~lr~ 70 (164)
T 2hwy_A 2 SPYLVPDTQALCHH-----LPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP------GARDGIRYLEAEFKKGNRYIRC 70 (164)
T ss_dssp -CEEEECHHHHHHC-----HHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCH------HHHHHHHHHHHHHHHTCSSEEE
T ss_pred CceEEechHHHHhC-----HHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhCCCeEEE
Confidence 56899999999999 8888888 79999999999999999999972 6999999999999999999999
Q ss_pred cCcccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcC------CCcEEEEECCh---
Q 002923 701 QSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKN------DRCLVLLSNDV--- 771 (865)
Q Consensus 701 QSs~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~------~~~VVLVTkDi--- 771 (865)
|+..+.... .+. +. + .| ....+||.||+||++|++.+. ..-|+|+|+|.
T Consensus 71 Q~~~~~~~~---~~~------~~-~-----------~D-~~~~~~d~IL~CC~~l~~~~~~~~~~~~~~VtlLtg~~l~~ 128 (164)
T 2hwy_A 71 QKEVGKSFE---RHK------LK-R-----------QD-ADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDN 128 (164)
T ss_dssp C-------------------------------------------CHHHHHHHHHHSSCC----------------CEEEE
T ss_pred EecCCcccc---ccc------cc-c-----------CC-ccccchhHHHHHHHHHHhccCCCccCcCCEEEEEeCCcccc
Confidence 987632111 000 00 0 00 123678999999999987642 24599999998
Q ss_pred --hhhh-----hhh--cCCccccchhhHHHh
Q 002923 772 --TMKI-----KAM--AEGLICETAQEFRES 793 (865)
Q Consensus 772 --NLRI-----KA~--AeGI~AEd~eeF~ds 793 (865)
|+.- .+. +.|+..+...+|..+
T Consensus 129 ~~~~s~~~~~~~~~a~~~~v~i~~i~~F~~~ 159 (164)
T 2hwy_A 129 PSVLSGPMQAALQAAAHASVDIKNVLDFYKQ 159 (164)
T ss_dssp CSCCCC----CHHHHHSTTSEECCHHHHHHH
T ss_pred cccCcHHHHHHHHHhhhCCCchhHHHHHHHH
Confidence 6555 444 499999999999854
No 3
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=159.44 Aligned_cols=67 Identities=34% Similarity=0.647 Sum_probs=61.4
Q ss_pred CCCCCCCCccceEEEEcC---------CCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCce
Q 002923 1 MLTHPSISRFHLQIQSNP---------SSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPV 71 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~---------~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~ 71 (865)
+|+||+|||+||+|+++. ....|+|.||+| +|||||||++|.+++++
T Consensus 54 ~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~S------------------------tNGT~vNg~ri~~~~~~ 109 (130)
T 4h87_A 54 CLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGS------------------------THGTFLNKTRIPPRTYC 109 (130)
T ss_dssp ECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSC------------------------SSCEEETTEECCTTCCE
T ss_pred EeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCC------------------------CCceEECCEECCCCcee
Confidence 478999999999999853 246799999999 99999999999999999
Q ss_pred ecCCCCEEEEcCceeeEEEE
Q 002923 72 EMDEGDTLKIGGSTRVYRLH 91 (865)
Q Consensus 72 eL~~gD~ikfG~str~y~l~ 91 (865)
+|+.||+|+||.|||.|+|.
T Consensus 110 ~L~~GD~I~~G~str~yvl~ 129 (130)
T 4h87_A 110 RVHVGHVVRFGGSTRLFILQ 129 (130)
T ss_dssp ECCTTCEEEETTCSEEEEEE
T ss_pred ECCCCCEEEECCceEEEEEc
Confidence 99999999999999999997
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.50 E-value=7.4e-15 Score=138.26 Aligned_cols=70 Identities=33% Similarity=0.526 Sum_probs=65.4
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.||+|||+||+|.+.....+|+|.||+| +|||||||++|.++.++.|+.||+|+
T Consensus 69 ~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S------------------------~NGT~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 69 TIDHQSCSRVHAALVYHKHLKRVFLIDLNS------------------------THGTFLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp CCCCSSSCTTSBEEEEBSSSCCEEEECCSC------------------------SSCEESSSCEECSSSCCEECTTCCBB
T ss_pred EeCCCCcChhheEEEEECCCCcEEEEECCC------------------------CCCeEECCEECCCCccEECCCCCEEE
Confidence 578999999999999987446999999999 99999999999999999999999999
Q ss_pred EcCceeeEEEEeec
Q 002923 81 IGGSTRVYRLHWVP 94 (865)
Q Consensus 81 fG~str~y~l~~~p 94 (865)
||.+++.|++.|.|
T Consensus 125 ~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 125 FGASTRAYTLREKP 138 (140)
T ss_dssp CSSCCCCBCCBCCC
T ss_pred ECCceEEEEEecCC
Confidence 99999999999776
No 5
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.4e-14 Score=140.36 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=60.9
Q ss_pred CCCCCCCCccceEEEEcCCCC--ceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCE
Q 002923 1 MLTHPSISRFHLQIQSNPSSL--KLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDT 78 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~--~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ 78 (865)
+|.||+|||+||+|++....+ +++|.||+| +|||||||++|.++++++|+.||+
T Consensus 84 ~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~S------------------------tNGT~VNg~ri~~~~~~~L~~GD~ 139 (158)
T 3els_A 84 GIPEETSSKQHCVIQFRNVRGILKCYVMDLDS------------------------SNGTCLNNVVIPGARYIELRSGDV 139 (158)
T ss_dssp EECCTTSCSSCEEEEEEEETTEEEEEEEECSC------------------------SSCCEETTEECCTTCCEECCTTEE
T ss_pred EcCCCCCCcccEEEEEEccCCeeEEEEEeCCC------------------------CCccEECCEEcCCCceEEcCCCCE
Confidence 368999999999999987411 399999999 999999999999999999999999
Q ss_pred EEEcCcee--eEEEEee
Q 002923 79 LKIGGSTR--VYRLHWV 93 (865)
Q Consensus 79 ikfG~str--~y~l~~~ 93 (865)
|+||.+++ .|.|.++
T Consensus 140 I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 140 LTLSEFEEDNDYELIFM 156 (158)
T ss_dssp EESSSCGGGCCEEEEEE
T ss_pred EEECCCCCCCCEEEEEE
Confidence 99999987 7777643
No 6
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.47 E-value=2.5e-14 Score=144.54 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=61.3
Q ss_pred CCCCCCCCccceEEEEcCCCC--ceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCE
Q 002923 1 MLTHPSISRFHLQIQSNPSSL--KLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDT 78 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~--~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ 78 (865)
+|.||+|||+||+|++....+ +|+|.||+| +|||||||++|.+++|++|+.||+
T Consensus 131 vL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgS------------------------tNGTfVNG~rI~~~~~~~L~~GD~ 186 (205)
T 3elv_A 131 GIPEETSSKQHCVIQFRNVRGILKCYVMDLDS------------------------SNGTCLNNVVIPGARYIELRSGDV 186 (205)
T ss_dssp EECCTTSCTTCEEEEEEEETTEEEEEEEECSC------------------------SSCCEETTEECCBTSCEECCTTCE
T ss_pred EeCCCCCCcccEEEEEecCCCceeEEEEeCCC------------------------CCCCeECCEECCCCceeECCCCCE
Confidence 478999999999999986422 499999999 999999999999999999999999
Q ss_pred EEEcCcee--eEEEEee
Q 002923 79 LKIGGSTR--VYRLHWV 93 (865)
Q Consensus 79 ikfG~str--~y~l~~~ 93 (865)
|+||.++| .|.|.++
T Consensus 187 I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 187 LTLSEFEEDNDYELIFM 203 (205)
T ss_dssp EESSSSGGGCSEEEEEE
T ss_pred EEECCCCCCCCeEEEEE
Confidence 99999986 6777754
No 7
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.42 E-value=2.7e-13 Score=123.74 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=61.1
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|.|||+||+|.+.. ..|+|.||+| +|||||||++|.++.++.|+.||+|+
T Consensus 47 ~l~d~~vSr~Ha~i~~~~--~~~~l~Dl~S------------------------~nGT~vng~~l~~~~~~~L~~gd~i~ 100 (118)
T 1uht_A 47 AIKDAGISTKHLRIESDS--GNWVIQDLGS------------------------SNGTLLNSNALDPETSVNLGDGDVIK 100 (118)
T ss_dssp ECCSSSSCTTCEEEEECS--SSEEEECCCC------------------------SSCCEESSSBCCTTCEEECCTTEEEE
T ss_pred EeCCCCCchHHeEEEEEC--CEEEEEECCC------------------------CCCeEECCEECCCCCeEEcCCCCEEE
Confidence 478999999999999987 6999999999 99999999999999999999999999
Q ss_pred EcCce-eeEEEEeec
Q 002923 81 IGGST-RVYRLHWVP 94 (865)
Q Consensus 81 fG~st-r~y~l~~~p 94 (865)
||..+ +.|.+.|-|
T Consensus 101 lG~~~~~~~~~~~~p 115 (118)
T 1uht_A 101 LGEYTSILVNFVSGP 115 (118)
T ss_dssp ETTTEEEEEEEECSS
T ss_pred ECCeEEEEEEEecCC
Confidence 99987 455666555
No 8
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.38 E-value=6.6e-13 Score=125.13 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=62.5
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCee--cCCCCceecCCCCE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKK--IEPGVPVEMDEGDT 78 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~r--I~~~~~~eL~~gD~ 78 (865)
+|.+|+|||+||+|.+...+..|+|.||+| +|||||||++ |.++.++.|+.||+
T Consensus 58 ~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S------------------------~NGT~vNg~~i~l~~~~~~~L~~GD~ 113 (132)
T 3va4_A 58 ALPFPSISKQHAVIEISAWNKAPILQDCGS------------------------LNGTQIVKPPRVLPPGVSHRLRDQEL 113 (132)
T ss_dssp ECCCTTSCTTCEEEEECSTTSCCEEEECSC------------------------SSCEEETTTTEEECTTCCEECCTTCE
T ss_pred EeCCCCcChhHEEEEEEcCCCEEEEEECCC------------------------CCCeEECCEEcccCCCCEEECCCCCE
Confidence 478999999999999985447899999999 9999999998 78999999999999
Q ss_pred EEEcCceeeEEEEeec
Q 002923 79 LKIGGSTRVYRLHWVP 94 (865)
Q Consensus 79 ikfG~str~y~l~~~p 94 (865)
|+||.....|+..-+|
T Consensus 114 I~lG~~~l~f~~~~~p 129 (132)
T 3va4_A 114 ILFADFPCQYHRLDVP 129 (132)
T ss_dssp EEETTEEEEEEECCCC
T ss_pred EEECCEEEEEEECCCC
Confidence 9999999888877333
No 9
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.34 E-value=6.9e-13 Score=124.77 Aligned_cols=85 Identities=25% Similarity=0.464 Sum_probs=65.8
Q ss_pred CCCCCC----CCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCC
Q 002923 1 MLTHPS----ISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEG 76 (865)
Q Consensus 1 ~L~hPs----iSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~g 76 (865)
+|.+|+ |||+||+|.+... +.|+|.||+| +|||||||++|.++.++.|+.|
T Consensus 41 ~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S------------------------~NGT~vNg~~l~~~~~~~L~~G 95 (138)
T 2pie_A 41 QLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKS------------------------LNGVWLNRARLEPLRVYSIHQG 95 (138)
T ss_dssp ECCCSSCTTSSCSSCEEEEECTT-SCEEEEECSC------------------------SSCEEETTEECCTTCCEECCTT
T ss_pred EeCCCCcCCCCChhHeEEEEcCC-CcEEEEECCC------------------------CCCeEECCEEcCCCCcEECCCC
Confidence 367888 9999999999543 6899999999 9999999999999999999999
Q ss_pred CEEEEcCc-----eeeEEEEeecccccccCCCCCCCCCChh
Q 002923 77 DTLKIGGS-----TRVYRLHWVPFSQAYDMNNPFVSPMDLE 112 (865)
Q Consensus 77 D~ikfG~s-----tr~y~l~~~p~~~~~d~~~p~~gP~~~~ 112 (865)
|+|+||.. ...|.+.. .....+.-.|++.|..+.
T Consensus 96 D~I~lG~~~~~~~~~~f~~~~--~~~~~~~~~~~l~~~~~~ 134 (138)
T 2pie_A 96 DYIQLGVPLENKENAEYEYEV--TEEDWETIYPCLSPKNDQ 134 (138)
T ss_dssp CEEEESCCCTTCSSCSEEEEE--EEEEHHHHGGGBCCCC--
T ss_pred CEEEECCCCCCCceEEEEEEe--cchhhhhhCcccccchhh
Confidence 99999984 33444442 233445556666666543
No 10
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.31 E-value=6.7e-13 Score=125.96 Aligned_cols=85 Identities=24% Similarity=0.435 Sum_probs=66.5
Q ss_pred CCCCCC----CCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCC
Q 002923 1 MLTHPS----ISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEG 76 (865)
Q Consensus 1 ~L~hPs----iSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~g 76 (865)
+|.+|+ |||+||+|.+... +.|+|.||+| +|||||||++|.++.++.|+.|
T Consensus 49 ~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S------------------------~NGT~vNg~~i~~~~~~~L~~G 103 (145)
T 2csw_A 49 QLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKS------------------------LNGVWLNRARLEPLRVYSIHQG 103 (145)
T ss_dssp ECCCSSCGGGSCTTCEEEEECTT-SCEEEEBSSC------------------------SSCEEESSCBCCBTCCEECCSS
T ss_pred EECCCCcCCCCChhHeEEEEcCC-CeEEEEECCC------------------------CCCeEECCEECCCCccEECCCC
Confidence 377898 9999999999643 6899999999 9999999999999999999999
Q ss_pred CEEEEcCce---eeEEEEeecccccccCCCCCCCCCC
Q 002923 77 DTLKIGGST---RVYRLHWVPFSQAYDMNNPFVSPMD 110 (865)
Q Consensus 77 D~ikfG~st---r~y~l~~~p~~~~~d~~~p~~gP~~ 110 (865)
|+|+||... ..+.+.+....+.++.-.|++.|..
T Consensus 104 D~I~iG~~~~~g~~~~f~~~~~~~~~~~~~~~l~~~~ 140 (145)
T 2csw_A 104 DYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKS 140 (145)
T ss_dssp CCEEESCCCTTCSSCSCCCCEEEEEHHHHSTTBCCBC
T ss_pred CEEEECCCCCCCceEEEEEEecccchhhccccccccc
Confidence 999999842 1122222333455566667776654
No 11
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.31 E-value=3.6e-12 Score=114.56 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||.|.+... ++|+|.||+| +|||||||++|.+ ++.|+.||+|+
T Consensus 39 ~l~d~~vSr~Ha~i~~~~~-~~~~l~Dl~S------------------------~nGt~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 39 VLSDMSISRQHAKIIIGND-NSVLIEDLGS------------------------KNGVIVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp ECCCTTSCSSCEEEEECTT-SCEEEEECSC------------------------SSCCEETTEECSS--EEECCTTCCEE
T ss_pred EeCCCCcchhhcEEEECCC-CcEEEEECcC------------------------CCCeEECCEECCC--CeECCCCCEEE
Confidence 4789999999999999853 6899999999 9999999999986 57899999999
Q ss_pred EcCceeeEEEE
Q 002923 81 IGGSTRVYRLH 91 (865)
Q Consensus 81 fG~str~y~l~ 91 (865)
||.++..|+-.
T Consensus 92 ~G~~~~~~~~~ 102 (106)
T 3gqs_A 92 LGTTLFLLVDY 102 (106)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEcc
Confidence 99988666543
No 12
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.30 E-value=4.7e-12 Score=112.52 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=55.5
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||.|.+.. ++|+|.||+| +|||||||++|. +++|++||+|+
T Consensus 36 ~l~d~~vSr~Ha~i~~~~--~~~~l~Dl~S------------------------~nGt~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 36 RLPDTGVSRRHLEIRWDG--QVALLADLNS------------------------TNGTTVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp ECCCTTSCSSCEEEEECS--SCEEEEECSC------------------------SSCCEETTEECS---EEECCTTCEEE
T ss_pred ECCCCCcChhhCEEEEeC--CEEEEEECCC------------------------CCCEEECCEECc---eEECCCCCEEE
Confidence 378999999999999976 6899999999 999999999997 57999999999
Q ss_pred EcCceeeEEEE
Q 002923 81 IGGSTRVYRLH 91 (865)
Q Consensus 81 fG~str~y~l~ 91 (865)
||.....|.+.
T Consensus 87 iG~~~~~~~~~ 97 (100)
T 3po8_A 87 LGHSEIIVRMH 97 (100)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEE
Confidence 99987666655
No 13
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.29 E-value=3e-12 Score=136.55 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=64.0
Q ss_pred CCCCCCCccceEEEEcCC---------CCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCcee
Q 002923 2 LTHPSISRFHLQIQSNPS---------SLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVE 72 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~---------~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~e 72 (865)
++||||||+||+|++..- ..+++|.||+| +|||||||++|++++|.-
T Consensus 38 idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgS------------------------knGTfVNGerI~~~~~~L 93 (325)
T 3huf_A 38 VISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDT------------------------KFGTKVNEKVVGQNGDSY 93 (325)
T ss_dssp CCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSC------------------------SSCEEETTEECCTTCEEE
T ss_pred cCCCCccccceEEEEecccccccccCCcceEEEEECCC------------------------CCCEEECCEECCCceeee
Confidence 589999999999999731 25899999999 999999999998877644
Q ss_pred cCCCCEEEEcCceeeEEEEeecccccc
Q 002923 73 MDEGDTLKIGGSTRVYRLHWVPFSQAY 99 (865)
Q Consensus 73 L~~gD~ikfG~str~y~l~~~p~~~~~ 99 (865)
...||+|+||...-.|++.|.|+--.+
T Consensus 94 ~~dgd~I~fG~~~~~fRl~W~P~Vl~~ 120 (325)
T 3huf_A 94 KEKDLKIQLGKCPFTINAYWRSMCIQF 120 (325)
T ss_dssp CSSEEEEEETTCSSCEEEEECCCCEEE
T ss_pred cCCCCEEEecCCcceEEEEEeeeEEEe
Confidence 457999999999999999999976654
No 14
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.29 E-value=3.8e-12 Score=119.86 Aligned_cols=67 Identities=34% Similarity=0.546 Sum_probs=59.6
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCC--------CCcee
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEP--------GVPVE 72 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~--------~~~~e 72 (865)
+|.+|+|||+||+|.+......|+|.||+| +|||||||++|.+ +.++.
T Consensus 45 ~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS------------------------~NGT~vNg~~i~~~~~~~~~~~~~~~ 100 (139)
T 1mzk_A 45 ALKDSEVSGKHAQITWNSTKFKWELVDMGS------------------------LNGTLVNSHSISHPDLGSRKWGNPVE 100 (139)
T ss_dssp ECCCTTSSSEEEEEEEETTTTEEEEEETTC------------------------SSCCEETTEESSCCCTTTCCCCCCEE
T ss_pred EeCCCCCChHHcEEEEECCCCEEEEEECCC------------------------CCCEEECCEECcCcccccccCCceEE
Confidence 478999999999999998545799999999 9999999999984 78999
Q ss_pred cCCCCEEEEcCceeeEEEE
Q 002923 73 MDEGDTLKIGGSTRVYRLH 91 (865)
Q Consensus 73 L~~gD~ikfG~str~y~l~ 91 (865)
|+.||+|+||..+..|+..
T Consensus 101 L~~GD~I~iG~~~~~~~~~ 119 (139)
T 1mzk_A 101 LASDDIITLGTTTKVYVRI 119 (139)
T ss_dssp CCTTEEEECSSSCEEEEEE
T ss_pred CCCCCEEEECCEEEEEEEc
Confidence 9999999999988776544
No 15
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.26 E-value=6.9e-12 Score=119.60 Aligned_cols=65 Identities=23% Similarity=0.448 Sum_probs=55.7
Q ss_pred CCCCCCCCccceEEEEc----C--CCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecC
Q 002923 1 MLTHPSISRFHLQIQSN----P--SSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMD 74 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~----~--~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~ 74 (865)
+|.+|+|||.||+|.+. . ..+.|+|.|| | +|||||||++|.++ ++.|+
T Consensus 51 ~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S------------------------~NGT~VNg~~i~~~-~~~L~ 104 (151)
T 2jqj_A 51 ILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-S------------------------RNGTFINGNRLVKK-DYILK 104 (151)
T ss_dssp ECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-C------------------------SSCEEETTEECCSS-CEEEC
T ss_pred EECCCCCccccCEEEEecccCCcCcCCEEEEEEC-C------------------------CCCeEECCEEcCCC-ceECC
Confidence 47899999999999992 1 2268999999 9 89999999999998 99999
Q ss_pred CCCEEEEcCceeeEEEEe
Q 002923 75 EGDTLKIGGSTRVYRLHW 92 (865)
Q Consensus 75 ~gD~ikfG~str~y~l~~ 92 (865)
.||+|+||. +..|++..
T Consensus 105 ~GD~I~lG~-~~~~~f~~ 121 (151)
T 2jqj_A 105 NGDRIVFGK-SCSFLFKY 121 (151)
T ss_dssp SSEEEEETT-TEEEEEEE
T ss_pred CCCEEEECC-CcEEEEEE
Confidence 999999999 44566663
No 16
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.26 E-value=5.7e-12 Score=114.52 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=56.8
Q ss_pred CCC-CCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 2 LTH-PSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 2 L~h-PsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
|.+ |.|||.||.|.+.+..+.|+|.| +| +|||||||++|.++.++.|+.||+|+
T Consensus 38 l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S------------------------~NGt~vng~~l~~~~~~~L~~GD~i~ 92 (116)
T 1lgp_A 38 FPSNKLVSGDHCRIVVDEKSGQVTLED-TS------------------------TSGTVINKLKVVKKQTCPLQTGDVIY 92 (116)
T ss_dssp CTTCTTSCTTCEEEEECTTTCCEEEEE-CS------------------------SSCCCCCCCCCCCSSCCCCCTTCEEE
T ss_pred eCCCCCCChhHeEEEEECCCCeEEEEE-CC------------------------cCCcEECCEEcCCCCcEECCCCCEEE
Confidence 555 59999999999975347999999 99 99999999999999999999999999
Q ss_pred EcCc------eeeEEEE
Q 002923 81 IGGS------TRVYRLH 91 (865)
Q Consensus 81 fG~s------tr~y~l~ 91 (865)
||.. ...|++.
T Consensus 93 ~G~~~~~~~~~~~f~f~ 109 (116)
T 1lgp_A 93 LVYRKNEPEHNVAYLYE 109 (116)
T ss_dssp EECCSSCGGGCEEEECC
T ss_pred EeccCCCCCceEEEEEE
Confidence 9987 3567665
No 17
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.25 E-value=7.7e-12 Score=119.20 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCCccceEEEEcCCC---CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEEEc
Q 002923 6 SISRFHLQIQSNPSS---LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIG 82 (865)
Q Consensus 6 siSR~Ha~i~~~~~~---~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ikfG 82 (865)
.|||+||.|.+.... ..|+|.|+ | +|||||||++|.++.++.|+.||+|+||
T Consensus 75 ~VSr~Ha~I~~~~~~~~~~~~~i~D~-S------------------------tNGT~VNg~~i~~~~~~~L~~GD~I~lG 129 (149)
T 1gxc_A 75 TYSKKHFRIFREVGPKNSYIAYIEDH-S------------------------GNGTFVNTELVGKGKRRPLNNNSEIALS 129 (149)
T ss_dssp GSCTTCEEEEEEECTTSSEEEEEEEC-C------------------------SSCEEETTEECCTTCEEECCTTEEEEES
T ss_pred cCchhheEEEEECCCCceeEEEEEEC-C------------------------CCCeEECCEECCCCCeEECCCCCEEEEC
Confidence 399999999998741 17999997 7 7999999999999999999999999999
Q ss_pred Cce-eeEEEE
Q 002923 83 GST-RVYRLH 91 (865)
Q Consensus 83 ~st-r~y~l~ 91 (865)
... +.|++.
T Consensus 130 ~~~~~~f~f~ 139 (149)
T 1gxc_A 130 LSRNKVFVFF 139 (149)
T ss_dssp STTCEEEEEE
T ss_pred CCCCeEEEEE
Confidence 974 678887
No 18
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.24 E-value=4.6e-12 Score=122.22 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=59.5
Q ss_pred CCCCCCCCccceEEEEcCCC-------------CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCC
Q 002923 1 MLTHPSISRFHLQIQSNPSS-------------LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEP 67 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~-------------~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~ 67 (865)
+|.||+|||+||+|.+.... ..|+|.|| | +|||||||++|.+
T Consensus 40 ~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-S------------------------tNGT~VNg~ri~~ 94 (158)
T 1dmz_A 40 KIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-G------------------------TNVSYLNNNRMIQ 94 (158)
T ss_dssp ECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-S------------------------TTCCEETTEECCS
T ss_pred EeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-C------------------------cCCeEECCEEcCC
Confidence 47899999999999986510 47899999 8 8999999999999
Q ss_pred CCceecCCCCEEEE-----cCceeeEEEE
Q 002923 68 GVPVEMDEGDTLKI-----GGSTRVYRLH 91 (865)
Q Consensus 68 ~~~~eL~~gD~ikf-----G~str~y~l~ 91 (865)
+.+++|+.||+|+| |.++..|.+.
T Consensus 95 ~~~~~L~~GD~I~l~~d~~G~~~l~f~~~ 123 (158)
T 1dmz_A 95 GTKFLLQDGDEIKIIWDKNNKFVIGFKVE 123 (158)
T ss_dssp SEEEECCSSCCEESCCCTTTTCCCCEEEE
T ss_pred CceEEcCCCCEEEEeecCCCCEEEEEEEE
Confidence 99999999999999 9999999887
No 19
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.22 E-value=2e-11 Score=113.26 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=56.6
Q ss_pred CCCCC-CCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEE
Q 002923 1 MLTHP-SISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTL 79 (865)
Q Consensus 1 ~L~hP-siSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~i 79 (865)
+|.+| .|||.||.|.+... +.|+|.|| | +|||||||++|.++.++.|+.||+|
T Consensus 49 ~l~~~~~vSr~Ha~i~~~~~-g~~~l~Dl-S------------------------~NGT~vNg~~l~~~~~~~L~~Gd~I 102 (127)
T 1g6g_A 49 HLGNISRLSNKHFQILLGED-GNLLLNDI-S------------------------TNGTWLNGQKVEKNSNQLLSQGDEI 102 (127)
T ss_dssp ECCSCTTSCSSCEEEEECTT-SCEEEEEC-C------------------------SSCCEETTEECCTTCCEECCTTCEE
T ss_pred EeCCCCCCChhHeEEEECCC-CcEEEEEC-C------------------------cCCeEECCEEcCCCCeEEcCCCCEE
Confidence 36788 59999999999643 68999999 9 8999999999999999999999999
Q ss_pred EEcCce----eeEEEE
Q 002923 80 KIGGST----RVYRLH 91 (865)
Q Consensus 80 kfG~st----r~y~l~ 91 (865)
+||.+. ..|++.
T Consensus 103 ~lG~~~~~~~i~f~~~ 118 (127)
T 1g6g_A 103 TVGVGVESDILSLVIF 118 (127)
T ss_dssp EECTTSGGGCEEEEEE
T ss_pred EECCCccCceEEEEEE
Confidence 999874 356665
No 20
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.22 E-value=8.5e-12 Score=123.42 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCCCCCCCccceEEEEcCCC-------------CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCC
Q 002923 1 MLTHPSISRFHLQIQSNPSS-------------LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEP 67 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~-------------~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~ 67 (865)
+|.+|+|||+||+|.+.... ..|+|.|| | +|||||||++|.+
T Consensus 64 ~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-S------------------------tNGT~VNg~ri~~ 118 (182)
T 1qu5_A 64 KIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-G------------------------TNVSYLNNNRMIQ 118 (182)
T ss_dssp CCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-S------------------------SSCCEETTEECCS
T ss_pred EECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-C------------------------cCCeEECCEEcCC
Confidence 57899999999999987510 57899999 8 8999999999999
Q ss_pred CCceecCCCCEEEE-----cCceeeEEEEe
Q 002923 68 GVPVEMDEGDTLKI-----GGSTRVYRLHW 92 (865)
Q Consensus 68 ~~~~eL~~gD~ikf-----G~str~y~l~~ 92 (865)
+.++.|+.||+|+| |.....|.+..
T Consensus 119 ~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~ 148 (182)
T 1qu5_A 119 GTKFLLQDGDEIKIIWDKNNKFVIGFKVEI 148 (182)
T ss_dssp SEEEECCTTBCCEEEEEGGGTEEEECCEEE
T ss_pred CcceEcCCCCEEEEEEcCCCCEEEEEEEEe
Confidence 99999999999999 99988888764
No 21
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.21 E-value=1.1e-11 Score=114.64 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=54.1
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||+|.+.. +.|+|.||+| +|||||||++|. .++.|+.||+|+
T Consensus 46 ~l~d~~VSr~Ha~i~~~~--~~~~l~Dl~S------------------------~nGt~vNg~~i~--~~~~L~~Gd~i~ 97 (128)
T 1r21_A 46 RIQLPVVSKQHCKIEIHE--QEAILHNFSS------------------------TNPTQVNGSVID--EPVRLKHGDVIT 97 (128)
T ss_dssp ECCCTTSCTTCEEEEECS--SCEEECCCCS------------------------SSCCEETTEECS--SCEECCTTEEEE
T ss_pred EECCCCCChhHEEEEEEC--CEEEEEECCC------------------------CCCEEECCEECC--CcEEcCCCCEEE
Confidence 478999999999999986 6999999999 999999999997 478999999999
Q ss_pred EcCceeeEE
Q 002923 81 IGGSTRVYR 89 (865)
Q Consensus 81 fG~str~y~ 89 (865)
||..+..|.
T Consensus 98 iG~~~~~~~ 106 (128)
T 1r21_A 98 IIDRSFRYE 106 (128)
T ss_dssp CSSCEEEEE
T ss_pred ECCEEEEEE
Confidence 998664443
No 22
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.20 E-value=2.3e-11 Score=110.87 Aligned_cols=60 Identities=27% Similarity=0.500 Sum_probs=53.3
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||.|.+.. .+|+|.||+| +|||||||++|. .+.|+.||+|+
T Consensus 44 ~l~d~~vSr~Ha~i~~~~--~~~~l~Dl~S------------------------~nGt~vng~~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 44 FLDDVTVSRRHAEFRLEG--GEFQVVDVGS------------------------LNGTYVNREPVD---SAVLANGDEVQ 94 (115)
T ss_dssp ECCSTTSCSSCEEEEEET--TEEEEEECSC------------------------SSCEEETTEECS---EEEECTTCEEE
T ss_pred EeCCcccChhheEEEEEC--CEEEEEECCC------------------------CCCeEECCEEcc---eEECCCCCEEE
Confidence 478999999999999986 6999999999 999999999997 57999999999
Q ss_pred EcCceeeEE
Q 002923 81 IGGSTRVYR 89 (865)
Q Consensus 81 fG~str~y~ 89 (865)
||..+..|.
T Consensus 95 iG~~~l~~~ 103 (115)
T 2xt9_B 95 IGKFRLVFL 103 (115)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 998654443
No 23
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.19 E-value=2.9e-11 Score=117.21 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=57.2
Q ss_pred CCCCC-CCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEE
Q 002923 1 MLTHP-SISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTL 79 (865)
Q Consensus 1 ~L~hP-siSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~i 79 (865)
+|.|| .|||.||.|.+... +.|+|.|| | +|||||||++|.++.++.|+.||+|
T Consensus 77 ~l~d~~~vSr~Ha~I~~~~~-g~~~l~Dl-S------------------------~NGT~vNg~~i~~~~~~~L~~GD~I 130 (164)
T 1g3g_A 77 HLGNISRLSNKHFQILLGED-GNLLLNDI-S------------------------TNGTWLNGQKVEKNSNQLLSQGDEI 130 (164)
T ss_dssp ECCCCTTTTSSCEEEEECST-TCEEEEEC-C------------------------SSCEEETTEEECTTEEEECCTTCEE
T ss_pred EeCCcCCcChhHEEEEECCC-CCEEEEEC-C------------------------CCCeEECCEEcCCCCceEcCCCCEE
Confidence 47788 59999999999643 78999999 9 8999999999999999999999999
Q ss_pred EEcCc----eeeEEEE
Q 002923 80 KIGGS----TRVYRLH 91 (865)
Q Consensus 80 kfG~s----tr~y~l~ 91 (865)
+||.+ ...|++.
T Consensus 131 ~iG~~~~~~~~~f~~~ 146 (164)
T 1g3g_A 131 TVGVGVESDILSLVIF 146 (164)
T ss_dssp EESCSSTTSCEEEEEE
T ss_pred EECCCCCCCcEEEEEE
Confidence 99996 3456666
No 24
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=99.18 E-value=3.1e-11 Score=115.00 Aligned_cols=123 Identities=21% Similarity=0.216 Sum_probs=89.2
Q ss_pred EEEEEccceeccCCCchhHHHhhcccCceEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHHHhccccceeccCcc
Q 002923 625 WTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSSV 704 (865)
Q Consensus 625 k~fVLDTNVLLhdeslk~L~lL~~fke~~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~l~k~~~~IhVQSs~ 704 (865)
..+|+||||+|+. +-.=.+..+|.+..|+||..||+||+.+++..+..+| ..+|++++-|.+...... +.+-.
T Consensus 6 ~~~vlDTSviIdG--ri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r-~rGr~gL~iL~~L~~~~~--vei~~-- 78 (134)
T 3ix7_A 6 GGKVLDTSVLVDG--RVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRR-AKGRRGLETLERLREAAP--LEVLE-- 78 (134)
T ss_dssp SCEEECHHHHHHC--HHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHH-HHHHHHHHHHHHHHHHSC--EEEEC--
T ss_pred CCeEcccceEEec--HHHHHHHhccccCceecHHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHHHhcCC--EEEeC--
Confidence 4689999999999 2111235678788999999999999999988775543 348899988766543221 11110
Q ss_pred cCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcCCCcEEEEECChhhhhhhhcCCccc
Q 002923 705 EEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLIC 784 (865)
Q Consensus 705 e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~~~~VVLVTkDiNLRIKA~AeGI~A 784 (865)
+ + . .....|+.|+..|..+ ..+|||+|.||+-+|.+.||++
T Consensus 79 ~-----------------------~-------~--~~~~vD~~ll~lA~~~-------~~~lvTnD~~L~kvA~~~GI~V 119 (134)
T 3ix7_A 79 T-----------------------T-------P--KGESVDEKLLFLARDL-------EAALVTNDHALLQMARIYGVKA 119 (134)
T ss_dssp C-----------------------C-------C--SCSSHHHHHHHHHHHT-------TCEEEESCHHHHHHHHHTTCCE
T ss_pred C-----------------------C-------C--CcccHHHHHHHHHHHh-------CCEEEeCCHHHHHHHHHCCCeE
Confidence 0 0 0 1124599999999854 3799999999999999999999
Q ss_pred cchhhHHHh
Q 002923 785 ETAQEFRES 793 (865)
Q Consensus 785 Ed~eeF~ds 793 (865)
....++...
T Consensus 120 l~l~~l~~a 128 (134)
T 3ix7_A 120 LSIQALAQA 128 (134)
T ss_dssp EEHHHHHHH
T ss_pred EehHHHHHh
Confidence 877765543
No 25
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.16 E-value=4.5e-11 Score=114.02 Aligned_cols=60 Identities=30% Similarity=0.489 Sum_probs=53.5
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||+|.+.. ++|+|.||+| +|||||||++|. .+.|+.||+|+
T Consensus 79 ~l~d~~VSr~Ha~I~~~~--~~~~l~DlgS------------------------~NGT~VNg~~i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 79 FLDDVTVSRRHAEFRINE--GEFEVVDVGS------------------------LNGTYVNREPRN---AQVMQTGDEIQ 129 (143)
T ss_dssp CCCCSSCCSSSEEEEEET--TEEEEEESCC------------------------SSCCEETTEECS---EEECCTTEEEE
T ss_pred EeCCCCcChhhEEEEEEC--CEEEEEECCC------------------------cCCeEECCEEcc---eEECCCCCEEE
Confidence 478999999999999976 6999999999 999999999998 57999999999
Q ss_pred EcCceeeEE
Q 002923 81 IGGSTRVYR 89 (865)
Q Consensus 81 fG~str~y~ 89 (865)
||.....|.
T Consensus 130 iG~~~l~f~ 138 (143)
T 2kb3_A 130 IGKFRLVFL 138 (143)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 998654443
No 26
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.16 E-value=7.8e-11 Score=108.32 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=54.8
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|.|||+||.|.+.. +.|+|.||+| +|||||||++|. .++.|+.||+|+
T Consensus 51 ~l~~~~vSr~Ha~i~~~~--~~~~l~dl~S------------------------~ngt~vNg~~i~--~~~~L~~GD~I~ 102 (120)
T 1wln_A 51 QLFGPGIQPHHCDLTNMD--GVVTVTPRSM------------------------DAETYVDGQRIS--ETTMLQSGMRLQ 102 (120)
T ss_dssp CCCCTTCCSSCEEEEESS--SCEEEEESCS------------------------SSCEEETSCBCS--SCEEECTTCEEE
T ss_pred EECCCCCchhheEEEEcC--CEEEEEECCC------------------------CCCEEECCEEcC--CCEECCCCCEEE
Confidence 478999999999999976 6899999999 899999999997 568999999999
Q ss_pred EcCceeeEEEE
Q 002923 81 IGGSTRVYRLH 91 (865)
Q Consensus 81 fG~str~y~l~ 91 (865)
||..+ .|++.
T Consensus 103 iG~~~-~~~f~ 112 (120)
T 1wln_A 103 FGTSH-VFKFV 112 (120)
T ss_dssp ETTTE-EEEEE
T ss_pred ECCce-EEEEE
Confidence 99853 46665
No 27
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.13 E-value=7.2e-11 Score=110.78 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.1
Q ss_pred CCCCCCCCccceEEEEcCCC---CceEEEeC-----CCCCcccccceeccccccCCCCccccccceEEcCeecCCCCcee
Q 002923 1 MLTHPSISRFHLQIQSNPSS---LKLSVIDL-----SSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVE 72 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~---~~~~v~DL-----~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~e 72 (865)
+|.+|+|||.||+|.+.... ..|+|.|| +| +|||||||++|.. +.
T Consensus 43 ~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S------------------------~NGT~vNg~~i~~---~~ 95 (131)
T 3hx1_A 43 RIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSS------------------------VNGLMINGKKVQE---HI 95 (131)
T ss_dssp ECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCC------------------------SSCEEETTEEESE---EE
T ss_pred EECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCC------------------------CCceEECCEEeEe---EE
Confidence 47899999999999997421 25999999 78 9999999999985 79
Q ss_pred cCCCCEEEEcCceeeEE
Q 002923 73 MDEGDTLKIGGSTRVYR 89 (865)
Q Consensus 73 L~~gD~ikfG~str~y~ 89 (865)
|+.||+|+||..+..|.
T Consensus 96 L~~GD~I~iG~~~~~~~ 112 (131)
T 3hx1_A 96 IQTGDEIVMGPQVSVRY 112 (131)
T ss_dssp CCTTCEEECSTTCEEEE
T ss_pred CCCCCEEEECCEEEEEE
Confidence 99999999999876443
No 28
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.10 E-value=9.3e-11 Score=114.35 Aligned_cols=59 Identities=27% Similarity=0.537 Sum_probs=52.7
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+++|||+||+|.+.. ++|+|.||+| +|||||||++|. .+.|+.||+|+
T Consensus 88 ~l~d~~VSr~HA~I~~~~--~~~~l~DlgS------------------------~NGT~VNg~~i~---~~~L~~GD~I~ 138 (162)
T 2kfu_A 88 FLDDVTVSRRHAEFRLEN--NEFNVVDVGS------------------------LNGTYVNREPVD---SAVLANGDEVQ 138 (162)
T ss_dssp ESTTTSSSSCSEEEEEET--TEEEEECCCC------------------------SSCEEETTBCCS---EEECCSSCEEE
T ss_pred EECCCCcChhhEEEEEEC--CEEEEEECCC------------------------CCCeEECCEEcc---eEECCCCCEEE
Confidence 478999999999999976 6999999999 999999999997 47899999999
Q ss_pred EcCceeeE
Q 002923 81 IGGSTRVY 88 (865)
Q Consensus 81 fG~str~y 88 (865)
||.....|
T Consensus 139 iG~~~l~f 146 (162)
T 2kfu_A 139 IGKFRLVF 146 (162)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 99865444
No 29
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.1e-10 Score=113.85 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=53.4
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||.||+|.+.. ..|+|.||+| +|||||||++|. .++|+.||+|+
T Consensus 98 ~L~d~~VSr~HA~I~~~~--~~~~l~DlgS------------------------tNGT~VNG~~i~---~~~L~~GD~I~ 148 (157)
T 3oun_A 98 RLPDTGVSRRHLEIRWDG--QVALLADLNS------------------------TNGTTVNNAPVQ---EWQLADGDVIR 148 (157)
T ss_dssp ECCCTTSCTTCEEEEECS--SCEEEEECSC------------------------SSCCEETTEECS---EEECCTTCEEE
T ss_pred EeCCCCcChhHEEEEEEC--CEEEEEECCC------------------------CCCeEECCEECc---eEECCCCCEEE
Confidence 478999999999999976 5899999999 999999999997 57999999999
Q ss_pred EcCceeeE
Q 002923 81 IGGSTRVY 88 (865)
Q Consensus 81 fG~str~y 88 (865)
||..+..|
T Consensus 149 lG~~~l~f 156 (157)
T 3oun_A 149 LGHSEIIV 156 (157)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 99977554
No 30
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.09 E-value=9.7e-11 Score=112.73 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=55.3
Q ss_pred CCCCCCCCccceEEEEcCCC--CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCE
Q 002923 1 MLTHPSISRFHLQIQSNPSS--LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDT 78 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~--~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ 78 (865)
+|.+|+|||+||+|.+...+ ..++++|++| +|||||||++|. .+++|+.||+
T Consensus 77 ~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S------------------------~ngt~VNG~~i~--~~~~L~~GD~ 130 (154)
T 4ejq_A 77 VLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCE------------------------GADTYVNGKKVT--EPSILRSGNR 130 (154)
T ss_dssp ECCCTTCCSEEEEEEEECTTSSSCEEEEEECT------------------------TCCEEETTEECC--SCEECCTTCE
T ss_pred EECCCCcccccEEEEEecCCCceeEEEEecCC------------------------CCceEECCEEcC--CceECCCCCE
Confidence 48899999999999998752 3588999999 899999999995 4689999999
Q ss_pred EEEcCceeeEEEE
Q 002923 79 LKIGGSTRVYRLH 91 (865)
Q Consensus 79 ikfG~str~y~l~ 91 (865)
|.||.+. .|++.
T Consensus 131 I~~G~~~-~Frf~ 142 (154)
T 4ejq_A 131 IIMGKSH-VFRFN 142 (154)
T ss_dssp EEETTTE-EEEEE
T ss_pred EEECCcE-EEEEc
Confidence 9999875 47777
No 31
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.99 E-value=4.4e-10 Score=120.40 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=54.4
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|+|||+||.|.+.. ++|+|.||+| +|||||||++|. .++.|+.||+|+
T Consensus 319 ~l~~~~vSr~Ha~i~~~~--~~~~l~Dl~S------------------------~nGt~vng~~i~--~~~~L~~gd~i~ 370 (388)
T 2ff4_A 319 VLDSANVSRHHAVIVDTG--TNYVINDLRS------------------------SNGVHVQHERIR--SAVTLNDGDHIR 370 (388)
T ss_dssp ECCCTTSCTTCEEEEECS--SCEEEEECSC------------------------SSCCEETTEECS--SEEEECTTCEEE
T ss_pred EECCCccChhHeEEEEEC--CEEEEEECCC------------------------CCCeEECCEECC--CceECCCCCEEE
Confidence 478999999999999976 6899999999 999999999995 578999999999
Q ss_pred EcCceeeEE
Q 002923 81 IGGSTRVYR 89 (865)
Q Consensus 81 fG~str~y~ 89 (865)
||..+..|.
T Consensus 371 ~G~~~~~~~ 379 (388)
T 2ff4_A 371 ICDHEFTFQ 379 (388)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 999765554
No 32
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.82 E-value=8.8e-09 Score=96.69 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=52.7
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|.|||+||+|.+... +.++|.||++ |||||||++|. .+++|+.||+|.
T Consensus 61 ~L~~~~Vs~~Ha~I~~~~~-g~~~l~dl~~-------------------------ngt~VNG~~V~--~~~~L~~GD~I~ 112 (124)
T 3fm8_A 61 QLCGMGILPEHCIIDITSE-GQVMLTPQKN-------------------------TRTFVNGSSVS--SPIQLHHGDRIL 112 (124)
T ss_dssp ECCSTTCCSSCEEEEECTT-SCEEEEECTT-------------------------CCEEETTEECC--SCEEECTTCEEE
T ss_pred EECCCCeecceEEEEECCC-CeEEEEECCC-------------------------CCEEECCEEcC--CcEECCCCCEEE
Confidence 4789999999999998643 6899999965 99999999997 468999999999
Q ss_pred EcCceeeEEEE
Q 002923 81 IGGSTRVYRLH 91 (865)
Q Consensus 81 fG~str~y~l~ 91 (865)
||.+. .|++.
T Consensus 113 lG~~~-~FrFn 122 (124)
T 3fm8_A 113 WGNNH-FFRLN 122 (124)
T ss_dssp ETTTE-EEEEE
T ss_pred ECCCe-EEEEE
Confidence 99864 46654
No 33
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=5.3e-09 Score=100.79 Aligned_cols=124 Identities=23% Similarity=0.178 Sum_probs=77.4
Q ss_pred EEEEEccceeccCCCchhHHHhhcccCc-eEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHHHhc-cccceeccC
Q 002923 625 WTVVVDTSTLLDKESRKSLQLLQGLKGT-QLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVK-TKWWIHIQS 702 (865)
Q Consensus 625 k~fVLDTNVLLhdeslk~L~lL~~fke~-~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~l~k-~~~~IhVQS 702 (865)
+.||+||||+||. +-.-.+-.+|-+. .|+||..||+||+.+++..+. ..|++++.|.++... ....|.++-
T Consensus 4 ~~~vlDTSviIdG--rI~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~-----~GrrGLe~L~~L~~~~~~~~i~vei 76 (142)
T 3i8o_A 4 KKVCVDTCVVIDG--RITELIERGKLKDATIIIPEAVVSELEYQANMGRE-----IGYKGIEELRKLIEKASEHNIKVEY 76 (142)
T ss_dssp CEEEECHHHHHTT--HHHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEeecceEEEc--HHHHHHHcCCccCCeEEehHHHHHHHHHHHHccch-----hhHHHHHHHHHHHHHhhccCceEEE
Confidence 5799999999998 2111122456554 799999999999999987542 245555555443221 012233321
Q ss_pred cccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcCCCcEEEEECChhhhhhhhcCCc
Q 002923 703 SVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGL 782 (865)
Q Consensus 703 s~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~~~~VVLVTkDiNLRIKA~AeGI 782 (865)
.++ + | . +. .+ ........|..|+..|..+ ..+|||+|.||+-.|.+.||
T Consensus 77 ~~~--r------~---~--~~----~i-------~~~~~~~vD~~l~~lA~~~-------~a~lvTnD~~l~kvA~~~GI 125 (142)
T 3i8o_A 77 YGE--R------P---T--RE----EI-------FLAKSGEIDAMIRKVAKET-------NSILLTSDWIQYNLAKAQGI 125 (142)
T ss_dssp ESC--C------C---C--HH----HH-------HSCCSSSHHHHHHHHHHHT-------TCEEEESCHHHHHHHHHTTC
T ss_pred ecc--c------C---c--hh----hh-------ccccCCcHHHHHHHHHHHh-------CCEEEcCCHHHHHHHHHcCC
Confidence 110 0 0 0 00 00 0001235699999999843 36899999999999999999
Q ss_pred cccc
Q 002923 783 ICET 786 (865)
Q Consensus 783 ~AEd 786 (865)
++..
T Consensus 126 ~V~~ 129 (142)
T 3i8o_A 126 EAYF 129 (142)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 9864
No 34
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=98.57 E-value=1.6e-08 Score=95.07 Aligned_cols=111 Identities=23% Similarity=0.246 Sum_probs=72.7
Q ss_pred EEEEccceeccCC--CchhHHHhhcccCceEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHHHhccccceeccCc
Q 002923 626 TVVVDTSTLLDKE--SRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSS 703 (865)
Q Consensus 626 ~fVLDTNVLLhde--slk~L~lL~~fke~~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~l~k~~~~IhVQSs 703 (865)
.+||||||+|+.. .......+..+....++||.+|+.||+.++++.... ....++.+++++..+ .+
T Consensus 25 ~vvLDTNvli~~~~~~~~~~~~l~~~l~~~~~I~~~vl~EL~~~~~~~~~~-~~~~~~~~~~ll~~~--------~v--- 92 (147)
T 1o4w_A 25 CAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGK-EKVAARFALKLLEHF--------EV--- 92 (147)
T ss_dssp EEEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHTTS--------EE---
T ss_pred EEEEEhhHHHHHHHcCchHHHHHHHhccCCEEEcHHHHHHHHHHHhccCcc-hHHHHHHHHHHHhcC--------cE---
Confidence 4999999999983 011122233332268999999999999988643321 112345555444211 00
Q ss_pred ccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcCCCcEEEEECChhhhhhhhcCCcc
Q 002923 704 VEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLI 783 (865)
Q Consensus 704 ~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~~~~VVLVTkDiNLRIKA~AeGI~ 783 (865)
.+ + . ... |+.|+++|+.. ..+|||+|++|+.+|...||+
T Consensus 93 ----v~------------~--------------~---~~~-D~~Ila~A~~~-------~~~LvT~D~~l~~~a~~~Gv~ 131 (147)
T 1o4w_A 93 ----VE------------T--------------E---SEG-DPSLIEAAEKY-------GCILITNDKELKRKAKQRGIP 131 (147)
T ss_dssp ----EC------------C--------------S---SCS-HHHHHHHHHHH-------TCEEECCCHHHHHHHHHTTCC
T ss_pred ----ee------------C--------------C---CCc-hHHHHHHHHHh-------CCEEEECCHHHHHHHHHCCCe
Confidence 00 0 0 124 99999999842 279999999999999999999
Q ss_pred ccchhh
Q 002923 784 CETAQE 789 (865)
Q Consensus 784 AEd~ee 789 (865)
+.++..
T Consensus 132 vi~~~~ 137 (147)
T 1o4w_A 132 VGYLKE 137 (147)
T ss_dssp EECCCC
T ss_pred EEEecC
Confidence 987664
No 35
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.34 E-value=4.5e-07 Score=83.33 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccce-EEcCeecCCCCceecCCCCE--
Q 002923 2 LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGT-WVSEKKIEPGVPVEMDEGDT-- 78 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT-~vN~~rI~~~~~~eL~~gD~-- 78 (865)
|++|+|||+||.|.... .++++.- | +||| ||||+++ .++.|..||+
T Consensus 35 LddpsVs~~HAti~~~~--~G~~~l~--S------------------------~nGtVFVNGqrv---~~~~I~~gDtI~ 83 (102)
T 3uv0_A 35 IADESMELAHATACILR--RGVVRLA--A------------------------LVGKIFVNDQEE---TVVDIGMENAVA 83 (102)
T ss_dssp CCCTTSCTTCEEEEEEE--TTEEEEE--E------------------------SSSCEEETTEEE---SEEEECGGGCBT
T ss_pred ECCcccccceEEEEecC--CceEEEE--e------------------------ccCcEEECCEEe---eeEEccCCcccc
Confidence 78999999999998876 3666632 7 8995 9999999 5789999999
Q ss_pred ----EEEcCceeeEEE
Q 002923 79 ----LKIGGSTRVYRL 90 (865)
Q Consensus 79 ----ikfG~str~y~l 90 (865)
|+||+-.-.+++
T Consensus 84 g~v~lrFGnvea~l~~ 99 (102)
T 3uv0_A 84 GKVKLRFGNVEARLEF 99 (102)
T ss_dssp TEEEEEETTEEEEEEE
T ss_pred cEEEEEecCEEEEEEe
Confidence 999998755443
No 36
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.22 E-value=3e-06 Score=77.64 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=59.6
Q ss_pred CCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEEE
Q 002923 2 LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKI 81 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ikf 81 (865)
+++..|||+|+.|......+.+.|.|++. |+|+|||+++.++..++|.+||+|.+
T Consensus 35 I~DkrcSR~h~~L~~~~~~g~v~vk~lg~-------------------------Np~~vng~~l~k~~~~~L~~GD~l~L 89 (102)
T 3kt9_A 35 ITDKKCSRQQVQLKAECNKGYVKVKQVGV-------------------------NPTSIDSVVIGKDQEVKLQPGQVLHM 89 (102)
T ss_dssp CCCTTSCSSCEEEEEETTTTEEEEEECSS-------------------------SCCEETTEECCBTCEEEECTTCCEEE
T ss_pred cccCcccCcceEEEEecCCCEEEEEECcC-------------------------CCCeECCEEcCCCCeEEeCCCCEEEE
Confidence 45788999999999998657789999998 99999999999999999999999999
Q ss_pred cCceeeEEEEe
Q 002923 82 GGSTRVYRLHW 92 (865)
Q Consensus 82 G~str~y~l~~ 92 (865)
-...-.|.+.+
T Consensus 90 l~~~~~~~v~f 100 (102)
T 3kt9_A 90 VNELYPYIVEF 100 (102)
T ss_dssp ETTEEEEEEEE
T ss_pred ccCCceEEEEe
Confidence 88888888774
No 37
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.07 E-value=7.8e-06 Score=76.01 Aligned_cols=65 Identities=20% Similarity=0.352 Sum_probs=55.6
Q ss_pred CCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEEE
Q 002923 2 LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKI 81 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ikf 81 (865)
+++..|||+|+.+.++...+.+.|.|||+ |+|++||.+|.++..++|..||+|.+
T Consensus 41 I~DkrcSR~hv~L~ad~~~~~v~vk~lG~-------------------------Np~~vng~~l~k~~~~~L~~GD~leL 95 (110)
T 2brf_A 41 VTDRKCSRTQVELVADPETRTVAVKQLGV-------------------------NPSTTGTQELKPGLEGSLGVGDTLYL 95 (110)
T ss_dssp BCCTTSCSSCEEEEEETTTTEEEEEECSS-------------------------SCCEEC-CBCCTTCEEEEETTCEEEE
T ss_pred cccccceeeeEEEEEecCCCEEEEEEccc-------------------------CCcEECCEEcCCCCEEEecCCCEEEE
Confidence 46889999999999988778999999999 99999999999999999999999998
Q ss_pred cCceeeEEEE
Q 002923 82 GGSTRVYRLH 91 (865)
Q Consensus 82 G~str~y~l~ 91 (865)
=.-.-.|.+.
T Consensus 96 l~g~y~~~v~ 105 (110)
T 2brf_A 96 VNGLHPLTLR 105 (110)
T ss_dssp ETTEEEEEEE
T ss_pred ccCCeEEEEE
Confidence 4444446555
No 38
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.1e-05 Score=97.14 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=80.5
Q ss_pred CccEEEEEccceeccCCCchhHHHhhcc-cCceEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHHHhccc--cce
Q 002923 622 RRGWTVVVDTSTLLDKESRKSLQLLQGL-KGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTK--WWI 698 (865)
Q Consensus 622 ~rkk~fVLDTNVLLhdeslk~L~lL~~f-ke~~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~l~k~~--~~I 698 (865)
..+.++|+||||+||. +++|+.- .-..||||-+|++|+-. ++... -. -|...+.+.. ..+
T Consensus 59 ~~~~~~i~d~~v~l~~-----~d~le~~~~~~~vii~qtv~~~v~~--~~~~~------y~----rl~~l~~~~~~~~~~ 121 (977)
T 2wp8_J 59 IGKHYVVLDTNVVLQA-----IDLLENPNCFFDVIVPQIVLDEVRN--KSYPV------YT----RLRTLCRDSDDHKRF 121 (977)
T ss_dssp TSBEEEEECHHHHHHH-----HHHHTCTTTCCEEEEEHHHHHHHHH--HCHHH------HH----HHHHHHHTCCSSCEE
T ss_pred CCCeEEEecHHHHHHH-----HHHhhcccccCCEEEEHHHHHHHHh--cCHHH------HH----HHHHHhcCcCcCceE
Confidence 4678999999999999 8888765 45679999999999865 22111 11 2233333322 122
Q ss_pred eccCcccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcC--CCcEEEEECChhhhhh
Q 002923 699 HIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKN--DRCLVLLSNDVTMKIK 776 (865)
Q Consensus 699 hVQSs~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~--~~~VVLVTkDiNLRIK 776 (865)
.+-. ++.-.. + ...+ ...+-....||-.|..+|.+|....+ ..+|||||+|..-+-|
T Consensus 122 ~vF~-ne~~~~-------t---~~~~----------~~~es~~~r~~r~i~~~~~wy~~hl~~~~~~vv~~t~d~~~~~~ 180 (977)
T 2wp8_J 122 IVFH-NEFSEH-------T---FVER----------LPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREA 180 (977)
T ss_dssp EEEC-TTTBTT-------T---CCC-----------------CCHHHHHHHHHHHHHHHHHGGGTCEEEEEECC------
T ss_pred EEEc-cccchh-------h---cccC----------ccCCChhhhhHHHHHHHHHHHHHhccccCCCEEEEeCCHHHHHH
Confidence 2210 110000 0 0000 00011234678899999999998765 5689999999999999
Q ss_pred hhc---CCccccchhhHHHhhc
Q 002923 777 AMA---EGLICETAQEFRESLV 795 (865)
Q Consensus 777 A~A---eGI~AEd~eeF~dsLv 795 (865)
|.. .||.+.+..+|.+.|.
T Consensus 181 ~~~~~~~~~~~~s~~~y~~~~~ 202 (977)
T 2wp8_J 181 ATKEVESNIITKSLVQYIELLP 202 (977)
T ss_dssp -----CCCSCEEEHHHHHHTST
T ss_pred HhhhccCCcEEEEHHHHHHhcc
Confidence 999 9999999999998874
No 39
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=97.87 E-value=2.9e-05 Score=75.16 Aligned_cols=68 Identities=22% Similarity=0.373 Sum_probs=58.1
Q ss_pred CCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEEE
Q 002923 2 LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKI 81 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ikf 81 (865)
+.+..|||+|+.+.++...+.+.|.+|+. |+|+|||.+|.++..++|..||+|.+
T Consensus 41 ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~-------------------------NP~~vng~~L~k~~~~~L~~GD~LeL 95 (143)
T 1yj5_C 41 VTDRKCSRNQVELIADPESRTVAVKQLGV-------------------------NPSTVGVHELKPGLSGSLSLGDVLYL 95 (143)
T ss_dssp BCCSSSCSSCEEEEEETTTTEEEEEECSS-------------------------SCCEETTEECCTTCEEEECTTCEEES
T ss_pred cccccccceeEEEEEecCCCeEEEEEccc-------------------------CCcEECCEEecCCCEEEecCCCEEEE
Confidence 46889999999999988767888999998 99999999999999999999999997
Q ss_pred cCceeeEEEEeec
Q 002923 82 GGSTRVYRLHWVP 94 (865)
Q Consensus 82 G~str~y~l~~~p 94 (865)
=.-.-.|.+.|.+
T Consensus 96 l~g~y~f~V~f~e 108 (143)
T 1yj5_C 96 VNGLYPLTLRWEE 108 (143)
T ss_dssp SSSCSEEEEEEEE
T ss_pred ecCCceEEEEecC
Confidence 4444456666544
No 40
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.79 E-value=2.5e-05 Score=73.93 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEE
Q 002923 1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLK 80 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ik 80 (865)
+|.+|.|||+|++|+..+ .+|+|. +| +||||+||.++.++. .|.+|+.|.
T Consensus 38 vL~D~~Vs~~H~~L~~~~--~g~~L~--~s------------------------~ngt~vdG~~v~~~~--~L~~g~~l~ 87 (123)
T 4a0e_A 38 VLSDSEIAPVHLVLMVDE--EGIRLT--DS------------------------AEPLLQEGLPVPLGT--LLRAGSCLE 87 (123)
T ss_dssp ECCCTTSCSSCEEEEEET--TEEEEE--EE------------------------SSCCEETTEECCTTC--BCCTTSCEE
T ss_pred EEeCCCccceeEEEEECC--CeEEEE--ec------------------------cCCEEECCEEccccc--ccCCCCEEE
Confidence 588999999999999988 488886 67 899999999999887 699999999
Q ss_pred EcCceeeEEEE
Q 002923 81 IGGSTRVYRLH 91 (865)
Q Consensus 81 fG~str~y~l~ 91 (865)
+|...-.|.-.
T Consensus 88 lG~~~l~~~~~ 98 (123)
T 4a0e_A 88 VGFLLWTFVAV 98 (123)
T ss_dssp ETTEEEEEEET
T ss_pred EccEEEEEEcC
Confidence 99998555444
No 41
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=97.79 E-value=2.8e-05 Score=82.85 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=52.6
Q ss_pred CCCCCC---------CccceEEEEcCCC---CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCC
Q 002923 2 LTHPSI---------SRFHLQIQSNPSS---LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGV 69 (865)
Q Consensus 2 L~hPsi---------SR~Ha~i~~~~~~---~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~ 69 (865)
+.+|+| ||.||.|....+. ..++|.| .| +|||||||.++..+.
T Consensus 42 ~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D-~S------------------------~nGt~vn~~~~~~~~ 96 (419)
T 3i6u_A 42 FDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED-HS------------------------GNGTFVNTELVGKGK 96 (419)
T ss_dssp TTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEE-CC------------------------SSCEEETTEECCTTC
T ss_pred ECCcccccccccccccccceEEEEEcCCCCceEEEEEE-CC------------------------cCCceECcccccCCC
Confidence 567776 9999999765321 2388999 67 799999999999999
Q ss_pred ceecCCCCEEEEcCcee-eEEEE
Q 002923 70 PVEMDEGDTLKIGGSTR-VYRLH 91 (865)
Q Consensus 70 ~~eL~~gD~ikfG~str-~y~l~ 91 (865)
...|..||.|.||.+.. .|.+.
T Consensus 97 ~~~l~~~d~i~~~~~~~~~~~~~ 119 (419)
T 3i6u_A 97 RRPLNNNSEIALSLSRNKVFVFF 119 (419)
T ss_dssp EEECCTTEEEEESSTTCEEEEEE
T ss_pred cccCCCCCEeeeeccccceEEEe
Confidence 99999999999998854 44443
No 42
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=97.78 E-value=1.4e-05 Score=75.20 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=56.7
Q ss_pred CCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCCEEEE
Q 002923 2 LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKI 81 (865)
Q Consensus 2 L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD~ikf 81 (865)
+++..|||+|+.+.++.....+.|.+|++ |+|+|||.+|.++..++|..||+|.+
T Consensus 48 I~DkrcSR~qv~L~ad~~~~~v~vk~lG~-------------------------NP~~vng~~l~k~~~~~L~~GD~l~L 102 (119)
T 1ujx_A 48 VTDRKCSRNQVELIADPESRTVAVKQLGV-------------------------NPSTVGVQELKPGLSGSLSLGDVLYL 102 (119)
T ss_dssp BCCTTSCTTSEEEEEETTTTEEEEEECSS-------------------------SCCBSSSSBCCTTCEEEEETTCCCBC
T ss_pred cccccccceeEEEEEecCCCEEEEEEccc-------------------------CCcEECCEEecCCCEEEecCCCEEEE
Confidence 46889999999999988768899999998 99999999999999999999999986
Q ss_pred cCceeeEEEEee
Q 002923 82 GGSTRVYRLHWV 93 (865)
Q Consensus 82 G~str~y~l~~~ 93 (865)
=.-.-.|.+.+.
T Consensus 103 l~g~y~~~v~f~ 114 (119)
T 1ujx_A 103 VNGLYPLTLRWS 114 (119)
T ss_dssp BTTBSCCEEEEC
T ss_pred ecCCeEEEEEec
Confidence 443344555543
No 43
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=97.78 E-value=4.8e-05 Score=75.58 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=48.7
Q ss_pred CCCCCCCCccceEEEEcCCC---CceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCceecCCCC
Q 002923 1 MLTHPSISRFHLQIQSNPSS---LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGD 77 (865)
Q Consensus 1 ~L~hPsiSR~Ha~i~~~~~~---~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~eL~~gD 77 (865)
+|..|.|++.||.|.....+ ..+.|... + .++|||||++|. .+++|+.||
T Consensus 107 ~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~------------------------~a~t~VNG~~I~--~~~~L~~GD 159 (184)
T 4egx_A 107 VLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-E------------------------GADTYVNGKKVT--EPSILRSGN 159 (184)
T ss_dssp ECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-T------------------------TCCEEETTEECC--SCEECCTTC
T ss_pred EECccccccccEEEEEcCCCCceEEEEEeeC-C------------------------CCeEEEcCEEcc--ccEEcCCCC
Confidence 36789999999999987642 22344443 3 378999999995 578999999
Q ss_pred EEEEcCceeeEEEE
Q 002923 78 TLKIGGSTRVYRLH 91 (865)
Q Consensus 78 ~ikfG~str~y~l~ 91 (865)
+|.||.+. .|++.
T Consensus 160 rI~lG~~h-~Frfn 172 (184)
T 4egx_A 160 RIIMGKSH-VFRFN 172 (184)
T ss_dssp EEEETTTE-EEEEE
T ss_pred EEEECCCC-EEEEC
Confidence 99999875 47777
No 44
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=96.76 E-value=0.00084 Score=68.76 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=41.4
Q ss_pred ceEEEEcCCC--CceEEEeCCCCCcccccceeccccccCCCCccccccce-EEcCeecCCCCceecC-CCCEEEEcCcee
Q 002923 11 HLQIQSNPSS--LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGT-WVSEKKIEPGVPVEMD-EGDTLKIGGSTR 86 (865)
Q Consensus 11 Ha~i~~~~~~--~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT-~vN~~rI~~~~~~eL~-~gD~ikfG~str 86 (865)
||.+...-.. +.|+|.||+| +||| ||||++|.... .|+ .||.|+||+.+-
T Consensus 111 ~~~~~~~~~~~~~~~~l~~l~s------------------------~ngtvyvNg~~i~~~~--~L~~~GD~I~ig~~~~ 164 (238)
T 1wv3_A 111 NAIIIKDFQSIQESQYVRIVHD------------------------KNTDVYINYELQEQLT--NKAYIGDHIYVEGIWL 164 (238)
T ss_dssp SCEEEECGGGHHHHCEEEEECC------------------------TTCCEEETTEECCSSE--EEEETTCEEEETTEEE
T ss_pred eEEEEecccCcCCcEEEEEccC------------------------CCCCEEECCEEeccce--eccCCcCEEEECCEEE
Confidence 6766665111 3799999999 8997 99999997654 699 999999999765
Q ss_pred eEE
Q 002923 87 VYR 89 (865)
Q Consensus 87 ~y~ 89 (865)
.|.
T Consensus 165 ~~~ 167 (238)
T 1wv3_A 165 EVQ 167 (238)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 45
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0009 Score=64.32 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEECChhhhhhhhcCCccccchh
Q 002923 743 TSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQ 788 (865)
Q Consensus 743 tNDDrILdCAL~lq~~~~~~~VVLVTkDiNLRIKA~AeGI~AEd~e 788 (865)
.+|..+|..|+.+. .+|||+|.+|+--|...||++.+..
T Consensus 84 ~~D~~lIaLA~~l~-------~~lvT~D~~l~~vA~~~Gv~v~~~~ 122 (165)
T 2lcq_A 84 KADIEVLALAYELK-------GEIFSDDYNVQNIASLLGLRFRTLK 122 (165)
T ss_dssp HHHHHHHHHHHHHT-------CCEECCCHHHHHHHHHTTCCEECCS
T ss_pred HHHHHHHHhHHHhC-------CeEEcCcHHHHHHHHHCCCeEEchh
Confidence 46899999988552 3789999999999999999998644
No 46
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=94.53 E-value=0.052 Score=49.67 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEECCh-hh-hhhhhcCCccccchhhHHHhh
Q 002923 743 TSEDHILDCALLFRKMKNDRCLVLLSNDV-TM-KIKAMAEGLICETAQEFRESL 794 (865)
Q Consensus 743 tNDDrILdCAL~lq~~~~~~~VVLVTkDi-NL-RIKA~AeGI~AEd~eeF~dsL 794 (865)
.+|-.|+.||+.. ...|||+|. .+ +++ ..|+.+.+..+|.+.+
T Consensus 96 ~~D~lIaA~A~~~-------~~~lvT~D~kdf~~i~--~~~i~~i~~~efl~~~ 140 (149)
T 1v96_A 96 MEDIITATTAIYT-------NSLLVTDDPKRYEPIR--RFGLDTMPLDKFIKEV 140 (149)
T ss_dssp HHHHHHHHHHHHH-------TCEEEESCHHHHGGGG--GGTCCEEEHHHHHHHH
T ss_pred HhHHHHHHHHHHc-------CCEEEECCHHHHhhhh--hCCeeecCHHHHHHHH
Confidence 3588888888732 236999995 44 444 4699999999999764
No 47
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=92.32 E-value=0.095 Score=49.16 Aligned_cols=34 Identities=18% Similarity=-0.103 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEECChhhhhhhhcCCcc
Q 002923 743 TSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLI 783 (865)
Q Consensus 743 tNDDrILdCAL~lq~~~~~~~VVLVTkDiNLRIKA~AeGI~ 783 (865)
..|-.||.+|+.. .+.|+|.|.-|.-.|...||+
T Consensus 123 ~~Dal~lA~A~~~-------~~~LvT~D~~l~~~a~~~Gi~ 156 (156)
T 2fe1_A 123 VYDAAYVALAEKI-------GGKLLTLDRQLAEKFPALVTP 156 (156)
T ss_dssp HHHHHHHHHHHHH-------TCEEECSCHHHHHHCTTTBC-
T ss_pred HHHHHHHHHHHHc-------CCCEEeCCHHHHHHHHHcCCC
Confidence 3588899999854 234999999999999888874
No 48
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=83.61 E-value=0.47 Score=41.95 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=37.6
Q ss_pred EEEccceeccCCCc----hhHHHhhcccCceEEEehhHHHHHhccccCCcccchhhHHHHHHHHHHHH
Q 002923 627 VVVDTSTLLDKESR----KSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEEC 690 (865)
Q Consensus 627 fVLDTNVLLhdesl----k~L~lL~~fke~~VVIPiiVLEELDgLKKg~~l~rra~~ARrALrwLee~ 690 (865)
++||||++|..... .....|.......++|+.+|+-|+-..-.+... ...+..+.+|+.+.
T Consensus 2 ~llDTnvli~~~~~~~~~~~~~~l~~~~~~~~~is~~~~~El~~~~~~~~~---~~~~~~~~~~l~~~ 66 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRLGVALLLN---GKKKNVLHERLEQS 66 (139)
T ss_dssp EEECHHHHTGGGSSSCCHHHHHHHHHSCGGGEEEEHHHHHHHHHHHHTCSC---HHHHHHHHHHHHHT
T ss_pred EeeehHHHHHHHcCCCCHHHHHHHHhCCcccEEeeHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHH
Confidence 68999999997532 233445444456899999999999853222111 11233455666653
No 49
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=76.36 E-value=0.69 Score=41.43 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=28.6
Q ss_pred EEEccceeccCCCc---hhHHHhhcccC-ceEEEehhHHHHHhcc
Q 002923 627 VVVDTSTLLDKESR---KSLQLLQGLKG-TQLVIPRMVTRELDCL 667 (865)
Q Consensus 627 fVLDTNVLLhdesl---k~L~lL~~fke-~~VVIPiiVLEELDgL 667 (865)
++|||||+|.-+.. .....|..... ..++|+.+|+-||-..
T Consensus 3 ~llDTnvli~~~~~~~~~~~~~l~~~~~~~~~~is~i~~~El~~~ 47 (134)
T 3zvk_A 3 YMLGTNICVYAINKHPDSYYNNLELLAKNNTIAISSIVLAELQYG 47 (134)
T ss_dssp EEECHHHHHHHHHHCCHHHHHHHHHHHTTSEEEEEHHHHHHHHHH
T ss_pred EEeeHHHHHHHHcCCcHHHHHHHHhcCcCCcEEeeheeHHHHHHH
Confidence 78999999987411 12233433333 6899999999999753
No 50
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=75.84 E-value=0.82 Score=40.84 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=28.2
Q ss_pred EEEccceeccCCCc--h-hHHHhhcccCceEEEehhHHHHHhcc
Q 002923 627 VVVDTSTLLDKESR--K-SLQLLQGLKGTQLVIPRMVTRELDCL 667 (865)
Q Consensus 627 fVLDTNVLLhdesl--k-~L~lL~~fke~~VVIPiiVLEELDgL 667 (865)
++||||++|.-+.. . ....|.... ..++|+.+|+-||-..
T Consensus 4 ~llDTnvli~~~~~~~~~~~~~l~~~~-~~~~iS~i~~~El~~~ 46 (132)
T 3tnd_A 4 FMLDTNICIFTIKNKPASVRERFNLNQ-GKMCISSVTLMELIYG 46 (132)
T ss_dssp EEECHHHHHHHHHHCCHHHHHHHHHHT-TSEEEEHHHHHHHHHH
T ss_pred eeeeHHHHHHHHcCCcHHHHHHHHhcC-CCEEeeHHHHHHHHHH
Confidence 78999999987521 1 223344434 6799999999999753
No 51
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=71.33 E-value=1.3 Score=41.23 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.5
Q ss_pred EEEccceeccCCCc------hhHHHhh-ccc--CceEEEehhHHHHHhcc
Q 002923 627 VVVDTSTLLDKESR------KSLQLLQ-GLK--GTQLVIPRMVTRELDCL 667 (865)
Q Consensus 627 fVLDTNVLLhdesl------k~L~lL~-~fk--e~~VVIPiiVLEELDgL 667 (865)
+++||||+|.-+.. .+...+. ... +..++||.+|+-|+-..
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~ 52 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTL 52 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHH
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHH
Confidence 78999999986522 1233444 443 56899999999999865
No 52
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=70.33 E-value=0.66 Score=42.87 Aligned_cols=70 Identities=7% Similarity=0.054 Sum_probs=56.8
Q ss_pred cccccccCCCCcccccccCCCCe---eEEEEecccccCCCchhhhhcCCCCCCCcchhhhhhhhcccCCCCccc
Q 002923 177 ICSLFSDETSELIPKREIPSSGI---ESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLR 247 (865)
Q Consensus 177 L~~~FerEg~eley~~ee~~~g~---~~crieLPv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 247 (865)
|+-|.-+.+..++|++.+.|..+ |.|.|.++++..-+...+.+.|.-+..||..+++..+.+|. ..|++.
T Consensus 32 LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~-~~~~ie 104 (113)
T 1uil_A 32 LNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLY-HLGVIE 104 (113)
T ss_dssp HHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHH-HHTSSC
T ss_pred HHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHH-hcCCcc
Confidence 99999899888899987777654 99999999876666777888999999999999988887773 335554
No 53
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=61.70 E-value=4.1 Score=38.58 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=25.4
Q ss_pred EEEEccceeccCCCchhHHHhhcccCceEEEehhHHHHHhc
Q 002923 626 TVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDC 666 (865)
Q Consensus 626 ~fVLDTNVLLhdeslk~L~lL~~fke~~VVIPiiVLEELDg 666 (865)
-++|||||+|+-+....+.. .+....++|+.+++-||-.
T Consensus 22 ~~LlDTnvlI~~l~g~~~~~--~~~~~~l~iS~It~~El~~ 60 (150)
T 3dbo_B 22 AGVLDTSVFIATESGRQLDE--ALIPDRVATTVVTLAELRV 60 (150)
T ss_dssp EEEECSGGGBC-----CCCG--GGSCSEEEEEHHHHHHHHH
T ss_pred EEEEeHHHHHHHHcCCcchh--hcCCCcEEEchhHHHHHHH
Confidence 38899999999852111111 2246689999999999874
No 54
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=58.96 E-value=3.4 Score=39.61 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=27.8
Q ss_pred EEEEEccceeccCCCchhHHHhhc-ccCceEEEehhHHHHHhc
Q 002923 625 WTVVVDTSTLLDKESRKSLQLLQG-LKGTQLVIPRMVTRELDC 666 (865)
Q Consensus 625 k~fVLDTNVLLhdeslk~L~lL~~-fke~~VVIPiiVLEELDg 666 (865)
.-|+|||||+|+.+-......+.. .....++|+-+|+-||-.
T Consensus 19 ~~~LLDTnvli~~l~~~~~~~l~~~~~~~~l~iS~it~~El~~ 61 (156)
T 3h87_A 19 QRWLIDKSALVRLTDSPDMEIWSNRIERGLVHITGVTRLEVGF 61 (156)
T ss_dssp CCEEECHHHHTTGGGCTTHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHcCHHHHHHHHhccCCCEEEccccHHHHhh
Confidence 348999999999851111222222 234468999999999874
No 55
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=56.19 E-value=3.4 Score=39.58 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=29.1
Q ss_pred cCCCccEEEEEccceeccCCCchhHHHhhcccCceEEEehhHHHHHhcc
Q 002923 619 GEGRRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCL 667 (865)
Q Consensus 619 ~e~~rkk~fVLDTNVLLhdeslk~L~lL~~fke~~VVIPiiVLEELDgL 667 (865)
-+|+|...+|+|||+++.-+.. .-..+.. ...+++|..|+-|+-..
T Consensus 22 ~~~~M~~~ivvDTSvlv~~l~~-~~~~l~~--~~~~~ip~l~~~Ev~~v 67 (158)
T 1v8p_A 22 FQGAMAVEYLVDASALYALAAH-YDKWIKH--REKLAILHLTIYEAGNA 67 (158)
T ss_dssp -----CCCEEECHHHHHHHTTC-HHHHGGG--GGGEEECHHHHHHHHHH
T ss_pred ccCCCcceEEeeHHHHHHHHHh-hHHHHhh--cCCEEeHHHHHHHHHHH
Confidence 3555554489999999988522 2234433 35789999999998864
No 56
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=38.42 E-value=21 Score=38.59 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=29.6
Q ss_pred eEEcCeecCCCCceecCCCCEEEEcCc---eeeEEEE
Q 002923 58 TWVSEKKIEPGVPVEMDEGDTLKIGGS---TRVYRLH 91 (865)
Q Consensus 58 T~vN~~rI~~~~~~eL~~gD~ikfG~s---tr~y~l~ 91 (865)
-.|||++|+..+.+.++.||+|+||.. .|.|.-.
T Consensus 83 ~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV 119 (318)
T 3mml_A 83 PAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAV 119 (318)
T ss_dssp CEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEE
T ss_pred ceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEE
Confidence 468999999999999999999999965 6778655
No 57
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=28.96 E-value=14 Score=31.25 Aligned_cols=57 Identities=5% Similarity=-0.021 Sum_probs=44.4
Q ss_pred cccccccCCCCccccc-ccCCCCe---eEEEEecccccCCCchhhhhcCCCCCCCcchhhhhhhhcc
Q 002923 177 ICSLFSDETSELIPKR-EIPSSGI---ESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKI 239 (865)
Q Consensus 177 L~~~FerEg~eley~~-ee~~~g~---~~crieLPv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (865)
|+-|.-+.+..+.|++ ++.|..+ |.|.|.+. | ..+.+.|.-...|+..+++..+.+|
T Consensus 13 LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~-----~-~~~~G~G~sKK~Aeq~AA~~aL~~L 73 (76)
T 1ekz_A 13 VHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVG-----S-IVTEGEGNGKKVSKKRAAEKMLVEL 73 (76)
T ss_dssp HHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEET-----T-EEEEECCCSTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEEC-----C-EEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 7778878888899986 4555543 99998873 2 4578889999999999998877766
No 58
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=25.22 E-value=39 Score=38.48 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=29.5
Q ss_pred eEEcCeecCCCCceecCCCCEEEEcCc---eeeEEEE
Q 002923 58 TWVSEKKIEPGVPVEMDEGDTLKIGGS---TRVYRLH 91 (865)
Q Consensus 58 T~vN~~rI~~~~~~eL~~gD~ikfG~s---tr~y~l~ 91 (865)
-.|||++|...+.+.++.||+|+||.. .|.|.-.
T Consensus 300 ~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAv 336 (494)
T 3oep_A 300 ALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAV 336 (494)
T ss_dssp EEETTEEECSSEEEEECTTCEEEEEECSSCCEEEEEE
T ss_pred ceECCEEccCCeEEEECCCCEEEeCCCCCCcEEEEEe
Confidence 458999999999999999999999865 6778655
No 59
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=23.28 E-value=91 Score=26.76 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=26.3
Q ss_pred ccceEEcCeecCCCCceecCCCCEEEEcCceeeEEEEe
Q 002923 55 LHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHW 92 (865)
Q Consensus 55 ~nGT~vN~~rI~~~~~~eL~~gD~ikfG~str~y~l~~ 92 (865)
..+-.|||+.+.++ +.|.+||+|.|-...+.+.+.-
T Consensus 25 ~G~V~VNg~~~~~~--~~v~~gd~I~v~~~~~~~~~~~ 60 (92)
T 2k6p_A 25 VGAVWLNGSCAKAS--KEVKAGDTISLHYLKGIEEYTI 60 (92)
T ss_dssp HTCCEETTEECCTT--CBCCTTCEEEECCSSCCEEEEE
T ss_pred CCcEEECCEEcCCC--CCcCCCCEEEEEeCCceEEEEE
Confidence 34568999988665 4689999999966655566553
No 60
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=20.07 E-value=46 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.262 Sum_probs=20.7
Q ss_pred eEEcCeecCCCCc--eecCCCCEEEE
Q 002923 58 TWVSEKKIEPGVP--VEMDEGDTLKI 81 (865)
Q Consensus 58 T~vN~~rI~~~~~--~eL~~gD~ikf 81 (865)
..|||+-|+...| +.|++||.|.|
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 7788888888766 68999999998
Done!