BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002925
         (865 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
 pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
          Length = 614

 Score = 32.7 bits (73), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 211 LEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISP---RFLIIDDGWQSIN 267
           +  +Q+       GW +W++F   ++ + + + V  FV  G+      ++ ID+GW    
Sbjct: 2   VTTRQITVPSAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGT 61

Query: 268 RDDE-NPNEDSKNLVLGGEQMTARLH 292
           RD   N   D+     G   +TA +H
Sbjct: 62  RDSAGNITVDTAEWPGGMSAITAYIH 87


>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
           Maritima At 2.15 A Resolution
 pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
           Maritima At 2.15 A Resolution
          Length = 311

 Score = 32.3 bits (72), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 423 RPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGIGLVHPSQADDFYDSMYSYLAQAG 482
           +PG T    K I  N+ PG  G    + V KI E G   V     DD+ D +     + G
Sbjct: 36  KPGETQ---KAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLLIENYEKLG 92

Query: 483 ITG 485
           ITG
Sbjct: 93  ITG 95


>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
 pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
          Length = 449

 Score = 31.2 bits (69), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 697 KGYAECYKPVSGTVHVTDI---EWDQNAEAAHLGEAEEYIVYLSQADKIHLVTPKSEAIK 753
           KG +  Y+   GT+   +    E+D + E   L    E + ++   + I+L  PK  A K
Sbjct: 364 KGNSRQYEIFQGTLKPDNTYSNEFDSDVEVGDL----EKVKFIWYNNVINLTLPKVGASK 419

Query: 754 ITLQPSSFELFNFVPIKKVGPDI 776
           IT++ +   +FNF   + V  D+
Sbjct: 420 ITVERNDGSVFNFCSEETVREDV 442


>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
           Mortierella Vinacea
          Length = 397

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 218 SLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISP---RFLIIDDGWQSINRDDENPN 274
           ++  + GW TW+ +   V+   +    K     G+      ++IIDD WQ      +N  
Sbjct: 6   AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQ------KNER 59

Query: 275 EDSKNLV 281
           E SK L+
Sbjct: 60  ESSKTLL 66


>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
          Length = 362

 Score = 30.0 bits (66), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 222 KFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISP---RFLIIDDGWQSINRDDE 271
           + GW +W+ FY  +    + +     V+ G++    +++ IDD W   +RD +
Sbjct: 10  QMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQ 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,776,114
Number of Sequences: 62578
Number of extensions: 1331816
Number of successful extensions: 2765
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 8
length of query: 865
length of database: 14,973,337
effective HSP length: 107
effective length of query: 758
effective length of database: 8,277,491
effective search space: 6274338178
effective search space used: 6274338178
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)