Query 002925
Match_columns 865
No_of_seqs 304 out of 468
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cc1_A BH1870 protein, putativ 100.0 1.3E-34 4.5E-39 325.0 23.3 374 223-769 14-432 (433)
2 1zy9_A Alpha-galactosidase; TM 100.0 2.2E-29 7.7E-34 291.0 27.0 387 139-686 122-529 (564)
3 1uas_A Alpha-galactosidase; TI 100.0 1.5E-28 5E-33 269.6 26.2 331 223-769 11-362 (362)
4 3a21_A Putative secreted alpha 99.9 4E-27 1.4E-31 274.4 23.4 358 223-771 14-388 (614)
5 1szn_A Alpha-galactosidase; (b 99.9 3.2E-26 1.1E-30 256.2 25.6 351 223-769 14-413 (417)
6 3a5v_A Alpha-galactosidase; be 99.9 2.5E-25 8.5E-30 247.4 24.9 359 223-771 11-395 (397)
7 4do4_A Alpha-N-acetylgalactosa 99.9 2.8E-25 9.5E-30 244.5 23.6 343 223-772 11-389 (400)
8 3hg3_A Alpha-galactosidase A; 99.9 3.9E-23 1.3E-27 230.1 24.8 344 223-771 11-391 (404)
9 3lrk_A Alpha-galactosidase 1; 99.9 1.1E-21 3.9E-26 221.6 17.2 299 223-686 32-364 (479)
10 4fnq_A Alpha-galactosidase AGA 99.7 1.2E-15 4.2E-20 181.3 26.3 385 147-686 254-670 (729)
11 2xn2_A Alpha-galactosidase; hy 99.6 6.4E-15 2.2E-19 175.3 23.0 260 147-534 258-533 (732)
12 3mi6_A Alpha-galactosidase; NE 99.6 2.6E-13 9E-18 161.0 25.1 401 128-685 232-672 (745)
13 2yfo_A Alpha-galactosidase-suc 99.5 3E-13 1E-17 160.7 22.3 264 138-535 246-522 (720)
14 2g3m_A Maltase, alpha-glucosid 98.2 3.2E-05 1.1E-09 91.9 17.6 105 136-265 111-217 (693)
15 2f2h_A Putative family 31 gluc 98.1 2.6E-05 8.8E-10 93.8 16.6 73 182-265 239-311 (773)
16 4ba0_A Alpha-glucosidase, puta 97.9 0.00011 3.9E-09 88.7 17.2 87 158-266 219-305 (817)
17 3nsx_A Alpha-glucosidase; stru 97.9 0.00023 7.9E-09 84.3 18.9 158 76-265 40-205 (666)
18 3lpp_A Sucrase-isomaltase; gly 97.6 0.0015 5.2E-08 79.7 18.9 72 181-265 289-360 (898)
19 3l4y_A Maltase-glucoamylase, i 97.5 0.004 1.4E-07 75.9 21.5 71 182-265 262-332 (875)
20 2xvl_A Alpha-xylosidase, putat 97.3 0.0026 8.9E-08 78.5 16.4 71 182-265 405-475 (1020)
21 3a24_A Alpha-galactosidase; gl 96.6 0.01 3.5E-07 69.9 12.9 70 391-521 348-417 (641)
22 3top_A Maltase-glucoamylase, i 96.4 0.09 3.1E-06 64.4 19.4 157 76-265 168-333 (908)
23 2d73_A Alpha-glucosidase SUSB; 92.7 0.81 2.8E-05 54.8 13.4 81 391-521 419-500 (738)
24 2x2h_A Alpha-1,4-glucan lyase 91.9 1.6 5.5E-05 54.3 15.1 121 136-266 272-407 (1027)
25 4ba0_A Alpha-glucosidase, puta 45.2 55 0.0019 39.8 9.4 91 386-491 319-414 (817)
26 4h8e_A Undecaprenyl pyrophosph 41.8 65 0.0022 34.0 8.2 86 497-597 148-235 (256)
27 4axn_A Chitinase C1; hydrolase 35.9 49 0.0017 35.2 6.3 28 465-492 115-142 (328)
28 3ugs_B Undecaprenyl pyrophosph 32.9 39 0.0013 35.0 4.7 22 575-596 186-207 (225)
29 3sgv_B Undecaprenyl pyrophosph 31.5 45 0.0015 35.2 4.9 86 497-597 141-228 (253)
30 4hnl_A Mandelate racemase/muco 30.1 30 0.001 38.2 3.6 24 612-635 374-400 (421)
31 3kru_A NADH:flavin oxidoreduct 23.7 1.5E+02 0.005 32.2 7.4 24 390-414 81-104 (343)
32 3ip0_A 2-amino-4-hydroxy-6-hyd 20.5 1.9E+02 0.0064 28.3 6.7 69 181-249 2-78 (158)
No 1
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.3e-34 Score=324.99 Aligned_cols=374 Identities=19% Similarity=0.277 Sum_probs=242.3
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCccccc----ccccccc
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMT----ARLHRLD 295 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~----~rL~~f~ 295 (865)
+|||||++|++++||+.|++.++.| +.|+. +++++||||||...+++.... +|. ..+-++.
T Consensus 14 ~gwnsW~~~~~~i~e~~i~~~ad~~-~~gl~~~G~~~~~iDDgW~~~~~~~~~y~-----------~~~~~~~d~~G~~~ 81 (433)
T 3cc1_A 14 MGWNSWDCYGASVTEEEVLGNAEYM-ANHLKKYGWEYIVVDIQWYEPTANSSAYN-----------PFAPLCMDEYGRLL 81 (433)
T ss_dssp EEEESHHHHTTCCCHHHHHHHHHHH-HHHTGGGTCCEEEECSCTTCCCTTSTTCC-----------TTSCSCBCTTSCBC
T ss_pred EEEEChhhhCCcCCHHHHHHHHHHH-HhcchhhCCeEEEECCCcCCCCCcccccc-----------cccccccCCCCCEe
Confidence 9999999999999999999999999 44444 489999999998654321110 000 0011111
Q ss_pred cchhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCC
Q 002925 296 ESEKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNS 375 (865)
Q Consensus 296 en~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~ 375 (865)
.+ +
T Consensus 82 ~~--------------------~--------------------------------------------------------- 84 (433)
T 3cc1_A 82 PA--------------------T--------------------------------------------------------- 84 (433)
T ss_dssp CC--------------------T---------------------------------------------------------
T ss_pred EC--------------------C---------------------------------------------------------
Confidence 11 0
Q ss_pred CCCCCCcccCCCCcc-----chHHHHHHHhhccCCCCEEeeehhhccc-cCCCCCCCCCCcceeecccCCCCCCCccccc
Q 002925 376 VNEGCGRCSCKADNY-----GMKAFTRDLRTRFKGLDDIWVWHALCGA-WGGVRPGTTHLNSKIIPCNLSPGLDGTMDDL 449 (865)
Q Consensus 376 ~~~~~~~~~~~~~p~-----GL~~~V~~ik~~~~gv~~V~VWHAL~GY-WGGv~P~~~~~~~k~~~~~~spgl~~~~~d~ 449 (865)
+.||. ||+.+++.||+ .|+| +|+|..- |+ +..|.|+.+-|.+.. +..|+
T Consensus 85 ----------~kFP~~~~~~Gl~~l~~~ih~--~Glk-~Giw~~p-~i~~~~v~~~s~~~~~~~-----------~~~di 139 (433)
T 3cc1_A 85 ----------NRFPSAKNGAGFKPLSDAIHD--LGLK-FGIHIMR-GIPRQAVYENSPVLGSTK-----------TAREI 139 (433)
T ss_dssp ----------TTCGGGTTTTTTHHHHHHHHH--TTCE-EEEEEES-SEEHHHHHHTCBCTTSSC-----------BHHHH
T ss_pred ----------ccCCCcccCCCHHHHHHHHHH--cCCe-eEEEeCC-CCchhccCCCCccccccc-----------eeccc
Confidence 24566 99999999999 4887 6777522 21 112344332222110 11111
Q ss_pred ceeee---ecCC---ceeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhcc
Q 002925 450 AVVKI---VEGG---IGLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNF 523 (865)
Q Consensus 450 a~~~~---~~~g---~glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F 523 (865)
+.... -..+ +.+.+| ++++||+.+++.|+++|||+||+|.++. ..+. .+ ..+..++|++||+++
T Consensus 140 ~~~~~~~~~~~~~~~lD~~~p-~~~~~~~~~~~~l~~~GvDyvK~D~~~~-~~~~-~~--~~~~~~~~~~aL~~~----- 209 (433)
T 3cc1_A 140 AHTNSICPWNTDMYGVDPTKE-GAQSYYNSLFELYAQWGVDFVKVDDIAA-SRLY-DT--HLEEIKMIQRAIQAC----- 209 (433)
T ss_dssp EETTCCBTTBTTEEEECTTST-THHHHHHHHHHHHHHTTCCEEEEESCSC-TTSS-CC--CHHHHHHHHHHHHHS-----
T ss_pred ccCCcccCCCCCceeecCCCH-HHHHHHHHHHHHHHHcCCCEEEeCCccc-ccCC-cc--cHHHHHHHHHHHHhc-----
Confidence 10000 0112 233444 4899999999999999999999999875 2221 22 356778899999876
Q ss_pred CCCCeEeecCCCcccc---cccccccccccccCCCCCCCCCCCCCCcccccchhhhh-hhhcccccCCCcCCCCcccccc
Q 002925 524 KGTGLISSMQQCNDFF---FLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIH-CSYNSLWMGQFIQPDWDMFQSD 599 (865)
Q Consensus 524 ~g~~vI~CMs~~~~~~---~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~-~AyNSL~~g~~v~PDWDMF~S~ 599 (865)
+++|+.|||+.+... -...+...+||+|||+|+. |....|++. +++++.+.+...|||+|||+..
T Consensus 210 -gr~i~~slc~g~~~~~~~~~~~~~~n~wR~s~D~~~~----------w~~~~~~~~~~~~~~~~~~~g~~nD~Dml~vg 278 (433)
T 3cc1_A 210 -GRPMVLSLSPGPAPIKYAHHFKTNANMWRITDDFWDD----------WSLLYQMFERCEVWEKHIGTGHWPDCGMLPLG 278 (433)
T ss_dssp -SSCCEEECCCSBSSEESCSSSCCTTGGGCCEECCCSC----------HHHHHHHHHHHHHHHHSCCCSCCCBCCCBCCS
T ss_pred -CCCEEEEecCCCCChhhhhhhhhhCcEEEeccCcccc----------HHHHHHHHHHHHHHHhhcCCCccCChHHhccc
Confidence 788999998853211 1235778999999999987 545567766 5777888888899999999987
Q ss_pred c-----------------cch--hhhhhhhhccCCCEEEecCCCCCchhhhhcccCCCCcccccccCCCCCccccccCCC
Q 002925 600 H-----------------CCA--KFHAGSRAICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQHFALPTRDCLFRNPL 660 (865)
Q Consensus 600 H-----------------~~A--~~HAaaRAisGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~p~~PtrDcLF~dp~ 660 (865)
| ... +.|.+++||+|+|+|+||.+.+-+-+-|.-|. +..|+....-+.+.+ .++.+
T Consensus 279 ~~g~~~~~~~~~~~~~~lt~~E~rt~~alwai~~spL~ig~dl~~~~~~~~~lL~--N~eviavnqdg~~~~-~v~~~-- 353 (433)
T 3cc1_A 279 HIGIRSVDGPGGDRWTRFTKDEQLTMMNLWAICHSPLMFGGELRDNDEWTLSLLT--NEGILSINQKSVLNR-FVYRE-- 353 (433)
T ss_dssp EECTTCSSSSSSSEECSSCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHC--CHHHHHHHHHCEEEE-EEEEE--
T ss_pred CccccccccccccccCCCCHHHHHHHHHHHHHhcCceEecCccccCCHHHHHHhc--ChhheeecCCCcCce-eeEec--
Confidence 6 233 55999999999999999999987655554332 334444333333222 12222
Q ss_pred CCCCceEEEeecCC--cceEEEEEecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEee
Q 002925 661 FDKKTILKIWNFNK--YGGVIGAFNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQ 738 (865)
Q Consensus 661 ~d~~slLKIwn~n~--~~gViG~FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~ 738 (865)
+ -+.||.... ..-+|++||.+.. +.+-+++++++.. .+.|-|+.-=
T Consensus 354 --~--~~~vw~~~l~~g~~~val~N~~~~-----------------~~~~~~~~~~lgl-----------~~~~~v~Dlw 401 (433)
T 3cc1_A 354 --E--DKVAWAANGRNGEAYVALFNLHDQ-----------------QKTLQFRLDMVGI-----------METVQLFNVW 401 (433)
T ss_dssp --T--TEEEEEEECSSSCEEEEEEECSSS-----------------CEEEEECGGGTTC-----------CSCEEEEETT
T ss_pred --C--CcEEEEEECCCCCEEEEEEeCCCC-----------------CEEEEEEHHHcCC-----------CCceEEEECC
Confidence 1 266886542 3458999998642 2233455666632 1246677666
Q ss_pred cCe-EEEecCCCcceEEEecCCceEEEEEeee
Q 002925 739 ADK-IHLVTPKSEAIKITLQPSSFELFNFVPI 769 (865)
Q Consensus 739 sg~-l~~l~~~~~~l~vtL~~~~~Eilt~~Pv 769 (865)
+++ +...+ .+..+.++|++++..+|.+.|.
T Consensus 402 ~~~~~g~~~-~~~~~~~~v~~hg~~l~~l~~~ 432 (433)
T 3cc1_A 402 DRSFLQSLA-PSESFQIELKPHQSMMLKLSPD 432 (433)
T ss_dssp TTEEEEEEC-TTCCEEEEECTTCEEEEEEEEC
T ss_pred CCCcccccc-CCceEEEEECCCcEEEEEEEeC
Confidence 665 33432 2347999999999999999885
No 2
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=99.97 E-value=2.2e-29 Score=290.98 Aligned_cols=387 Identities=13% Similarity=0.151 Sum_probs=250.7
Q ss_pred EEEEEeeecCCceeeccCCCCCeEEEEEecCCcccccc-ccceEEEEeecCCHHHHHHHHHHHHHhhcccccccccccCC
Q 002925 139 YVMIIPIIESSFRSALHPGTDDHVMICAESGSTRLKAS-SFDAIAYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVP 217 (865)
Q Consensus 139 y~v~lPl~~g~fra~L~~~~~~~l~i~~esg~~~v~~~-~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P 217 (865)
+.++=-+.+..+++.+.-+ ++++.++++...+..+++ ....++++ .|++|.+++++..++++++. +....+..|
T Consensus 122 ~~~~G~~~~~~~~~~f~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~v~~~y~~l~g~~~---~p~w~~~~P 196 (564)
T 1zy9_A 122 GKVYGFLSSKIAHPFFAVE-DGELVAYLEYFDVEFDDFVPLEPLVVL-EDPNTPLLLEKYAELVGMEN---NARVPKHTP 196 (564)
T ss_dssp TEEEEESCCSSSEEEEEEE-TTEEEEEEECTTCCEEEEEECCCEEEE-ECSCHHHHHHHHHHHHHHHT---TCCCCSSCC
T ss_pred ceEEEEEecCCccceEEEe-cCcEEEEEecCCccccceeecceEEEE-eCCCHHHHHHHHHHHhcccC---CCccccCCc
Confidence 4554445566777777554 678999999876544322 22344433 69999999999999999874 222234444
Q ss_pred cccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccc
Q 002925 218 SLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDES 297 (865)
Q Consensus 218 ~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en 297 (865)
+|||||++|+.++|++.|++.++.+++ +++++++||||||+... ++..+
T Consensus 197 -----~gwnsW~~~~~~~te~~v~~~ad~~~~--~G~~~~~IDdgW~~~~G------------------------dw~~d 245 (564)
T 1zy9_A 197 -----TGWCSWYHYFLDLTWEETLKNLKLAKN--FPFEVFQIDDAYEKDIG------------------------DWLVT 245 (564)
T ss_dssp -----EEEESHHHHGGGCCHHHHHHHHHHGGG--TTCSEEEECTTSEEETT------------------------EEEEE
T ss_pred -----eEEcchhccCcCCCHHHHHHHHHHHHh--cCCcEEEECcccccccC------------------------CcccC
Confidence 899999999999999999999999995 77799999999996211 11111
Q ss_pred hhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCC
Q 002925 298 EKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVN 377 (865)
Q Consensus 298 ~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~ 377 (865)
+
T Consensus 246 --------------------~----------------------------------------------------------- 246 (564)
T 1zy9_A 246 --------------------R----------------------------------------------------------- 246 (564)
T ss_dssp --------------------C-----------------------------------------------------------
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred CCCCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecC
Q 002925 378 EGCGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEG 457 (865)
Q Consensus 378 ~~~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~ 457 (865)
+.||. |+.+|++|++ .|+| +++|..-.. +.|+++-|+..--.....+|..... ..--.+
T Consensus 247 --------~kFP~-lk~lvd~lh~--~Glk-~Giw~~P~~----v~~~S~ly~~~pdw~v~~~G~~~~~-----~~~W~~ 305 (564)
T 1zy9_A 247 --------GDFPS-VEEMAKVIAE--NGFI-PGIWTAPFS----VSETSDVFNEHPDWVVKENGEPKMA-----YRNWNK 305 (564)
T ss_dssp --------TTCCC-HHHHHHHHHH--TTCE-EEEEECTTE----EETTCHHHHHCGGGBCEETTEECEE-----EEETTE
T ss_pred --------ccCCC-HHHHHHHHHH--CCCE-EEEEeCCCc----cCCCChhHHhCCCeEEecCCeeeee-----ecccCC
Confidence 23576 9999999998 4886 788854321 3343322211100000001210000 000011
Q ss_pred CceeeCC--ChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccC-CCCeEeecCC
Q 002925 458 GIGLVHP--SQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFK-GTGLISSMQQ 534 (865)
Q Consensus 458 g~glv~p--~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~-g~~vI~CMs~ 534 (865)
...++|+ .++++||.+.++.++++|||+||.|.+......+..++ .+..+++|++++++ +.+.|+ ..-+.+|++.
T Consensus 306 ~~~~lD~t~P~a~~~~~~~~~~~~~~GVD~iK~D~~~~~~~~g~~~~-~~~~~~~y~~~l~~-l~~~~pr~i~i~~C~~g 383 (564)
T 1zy9_A 306 KIYALDLSKDEVLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGERKK-NITPIQAFRKGIET-IRKAVGEDSFILGCGSP 383 (564)
T ss_dssp EEEEBCTTCHHHHHHHHHHHHHHHHTTCCEEEECCGGGGGCSSBCSS-SCCHHHHHHHHHHH-HHHHHCTTSEEEECSCB
T ss_pred ceeecCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCccccccccc-cchHHHHHHHHHHH-HHhhCCCCeEEEecCCc
Confidence 1335555 46788999988888999999999999765443333333 45568899988887 566787 6656689886
Q ss_pred CcccccccccccccccccCCC---CCCCCC--CCCCCcccccchhhhhhhhcccccCCC-cC--CCCccccc--ccc---
Q 002925 535 CNDFFFLGTRQISMGRVGDDF---WFQDPN--GDPNGVYWLQGVHMIHCSYNSLWMGQF-IQ--PDWDMFQS--DHC--- 601 (865)
Q Consensus 535 ~~~~~~~~~~~~~v~R~SDDF---~p~dp~--s~p~~~~w~~~~Hi~~~AyNSL~~g~~-v~--PDWDMF~S--~H~--- 601 (865)
. +.+.+...++|+|+|+ |.++.. ++| ...+.+.++++.+++... .| ||+.||.+ .|.
T Consensus 384 ~----~~s~~~~n~~Ris~Di~~~W~s~~~~~~~p------~~~~~~~n~~~~~~~~~~~~~nDPDml~vg~~~~~lT~~ 453 (564)
T 1zy9_A 384 L----LPAVGCVDGMRIGPDTAPFWGEHIEDNGAP------AARWALRNAITRYFMHDRFWLNDPDCLILREEKTDLTQK 453 (564)
T ss_dssp S----GGGTTTCSEEECSSCCCSSCCTTSCSSSSS------CHHHHHHHHHHTGGGBTTTBEEECCCBCCCSSSCCCCHH
T ss_pred c----cccccccceEEEcCCccccccccccccccH------HHHHHHHHHHHHHhhccCCcccCCCEeEecCCCCCCCHH
Confidence 2 2245667889999999 665542 222 123445677787776542 35 45555554 343
Q ss_pred chhhhhhhhhccCCCEEEecCCC---CCchhhhhcccCCCCcccccccCCCCCccccccCCCCCCCceEEEeecCCcc-e
Q 002925 602 CAKFHAGSRAICGGPVYVSDSVG---GHDFDLLKQLVYPDGTIPRCQHFALPTRDCLFRNPLFDKKTILKIWNFNKYG-G 677 (865)
Q Consensus 602 ~A~~HAaaRAisGGPVYvSD~pG---~hdf~LLk~LvlpdG~vlr~~~p~~PtrDcLF~dp~~d~~slLKIwn~n~~~-g 677 (865)
..++|++++||+|+|+|+||.+. +++++||++++..+|...|. .++..+ ..+..+|.-.... -
T Consensus 454 E~r~h~alwAi~g~PLiigddl~~l~~~~l~lL~evIavng~~~~~------------~~~~~~-~~vw~v~a~~~~~g~ 520 (564)
T 1zy9_A 454 EKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLGGRPRV------------QNIMSE-DLRYEIVSSGTLSGN 520 (564)
T ss_dssp HHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHHHHHTTCSSEEEE------------TTTTCS-SSEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCeeeccCcccCCHHHHHHHHHHHHHcCCccee------------ecCCCC-ceEEEEecCCCCCCE
Confidence 37899999999999999999888 78999999999988654332 122222 2133333433333 4
Q ss_pred EEEEEecCC
Q 002925 678 VIGAFNCQG 686 (865)
Q Consensus 678 ViG~FN~qg 686 (865)
+|++||...
T Consensus 521 aValfN~~~ 529 (564)
T 1zy9_A 521 VKIVVDLNS 529 (564)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 899999864
No 3
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=99.96 E-value=1.5e-28 Score=269.56 Aligned_cols=331 Identities=17% Similarity=0.221 Sum_probs=218.8
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++|++++||+.|++.++.+++.|++ +++++||||||...+|..+ ++..+
T Consensus 11 ~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~G--------------------~~~~~-- 68 (362)
T 1uas_A 11 MGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQG--------------------NFVPN-- 68 (362)
T ss_dssp EEEESHHHHTTCCCHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTS--------------------CCCBC--
T ss_pred EEEECHHHHCCCCCHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCCCC--------------------CeeEC--
Confidence 9999999999999999999999999888877 8999999999975544210 11111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 69 ------------------~------------------------------------------------------------- 69 (362)
T 1uas_A 69 ------------------R------------------------------------------------------------- 69 (362)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.||+.+++.||+ +|+| +++|+.--..|.+- ..||
T Consensus 70 ------~~FP~Gl~~l~~~ih~--~Glk-~Giw~~~~~~~~~~---------------~~pg------------------ 107 (362)
T 1uas_A 70 ------QTFPSGIKALADYVHA--KGLK-LGIYSDAGSQTCSN---------------KMPG------------------ 107 (362)
T ss_dssp ------TTCTTCHHHHHHHHHH--TTCE-EEEEEESSSBCTTS---------------SSBC------------------
T ss_pred ------hccCccHHHHHHHHHH--CCCE-eEEEeeCCCccccC---------------CCCC------------------
Confidence 2478899999999998 5887 89998754444320 1122
Q ss_pred eeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccCCCCeE-eecCCCccc
Q 002925 460 GLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLI-SSMQQCNDF 538 (865)
Q Consensus 460 glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI-~CMs~~~~~ 538 (865)
+..+|+..++.|+++|||+||+|.+..-+ . ...+.| .+|..++.+.++.- ++ .|++....-
T Consensus 108 -------~~~~~~~~~~~~~~wGvdyvK~D~~~~~~-----~----~~~~~y-~~~~~al~~~~~~i-~~~~c~~g~~~p 169 (362)
T 1uas_A 108 -------SLDHEEQDVKTFASWGVDYLKYDNCNDAG-----R----SVMERY-TRMSNAMKTYGKNI-FFSLCEWGKENP 169 (362)
T ss_dssp -------CTTCHHHHHHHHHHHTCCEEEEECCCCTT-----C----CHHHHH-HHHHHHHHHHCTTS-EEEEESTTTTCG
T ss_pred -------chhHHHHHHHHHHHcCCCEEEECccCCCC-----C----CHHHHH-HHHHHHHHhhCCCc-EEEecCCCCCCh
Confidence 23457889999999999999999875321 1 112333 46666677777655 33 487653211
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcccccch-hhhhhhhcccccCCCcCCCCccccccc-----cchhhhhhhhhc
Q 002925 539 FFLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGV-HMIHCSYNSLWMGQFIQPDWDMFQSDH-----CCAKFHAGSRAI 612 (865)
Q Consensus 539 ~~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~-Hi~~~AyNSL~~g~~v~PDWDMF~S~H-----~~A~~HAaaRAi 612 (865)
.....+..+++|+|+|++|. |.... ++..+++.+-+.++..|+|+||++..+ .....|.++.|+
T Consensus 170 ~~w~~~~~n~~R~~~D~~~~----------w~~~~~~~~~~~~~~~~~~pg~~~D~Dml~vg~~~~t~~e~~~~~al~~i 239 (362)
T 1uas_A 170 ATWAGRMGNSWRTTGDIADN----------WGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWAL 239 (362)
T ss_dssp GGTGGGTCSEEECSSCCCSS----------HHHHHHHHHHHHTTGGGCBTTBEEECCCCCTTSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhhheeEEEecCCCCcC----------chhHHHHHHHHHHHHHhcCCCcccCcchheeCCCCCCHHHHHHHHHHHHH
Confidence 11245677899999999987 42222 333567777778888999999998754 345789999999
Q ss_pred cCCCEEEecCCCCCch---hhhhc--cc--CCC--CcccccccCCCCCccccccCCCCCCCceEEEeecC--CcceEEEE
Q 002925 613 CGGPVYVSDSVGGHDF---DLLKQ--LV--YPD--GTIPRCQHFALPTRDCLFRNPLFDKKTILKIWNFN--KYGGVIGA 681 (865)
Q Consensus 613 sGGPVYvSD~pG~hdf---~LLk~--Lv--lpd--G~vlr~~~p~~PtrDcLF~dp~~d~~slLKIwn~n--~~~gViG~ 681 (865)
+++|+++++.+.+.+- ++|+. ++ -.| | .++++- ..+ +. ..||.-. +..-+||+
T Consensus 240 ~~spL~~~~Dl~~~~~~~~~~l~n~evia~~qd~lg------~~~~~v----~~~----~~--~~v~a~~~~~~~~~v~~ 303 (362)
T 1uas_A 240 AKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLG------VQGKKV----QSD----NG--LEVWAGPLSNNRKAVVL 303 (362)
T ss_dssp TTCCEEECSCTTSCCHHHHHHHTCHHHHHHHTCTTC------CCCEEE----EEE----TT--EEEEEEECSTTCEEEEE
T ss_pred hCCceEecCChhhCCHHHHHhhcCHHHhhhcccccC------ccceEE----Eec----CC--eEEEEEEcCCCCEEEEE
Confidence 9999999999998764 44442 11 123 1 111111 111 12 3466543 23458999
Q ss_pred EecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEeecCeEEEecCCCcceEEEecCCce
Q 002925 682 FNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQADKIHLVTPKSEAIKITLQPSSF 761 (865)
Q Consensus 682 FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~sg~l~~l~~~~~~l~vtL~~~~~ 761 (865)
||.... +.+-.|+++++.. .....|.|+.--+++-.-. +..+.++|+++|.
T Consensus 304 ~N~~~~-----------------~~~~~~~l~~lgl---------~~~~~~~v~dlw~~~~~~~---~~~l~~~l~~~g~ 354 (362)
T 1uas_A 304 WNRQSY-----------------QATITAHWSNIGL---------AGSVAVTARDLWAHSSFAA---QGQISASVAPHDC 354 (362)
T ss_dssp EECSSS-----------------CEEEEEEGGGTTC---------CTTCEEEEEETTTTEEEEE---ESEEEEEECTTCE
T ss_pred EeCCCC-----------------CEEEEEEHHHcCC---------CCCCcEEEEECcCCCcccc---cceEEEEECCCeE
Confidence 997542 2333456666532 1123566654334432211 4679999999999
Q ss_pred EEEEEeee
Q 002925 762 ELFNFVPI 769 (865)
Q Consensus 762 Eilt~~Pv 769 (865)
-+|.+.|+
T Consensus 355 ~~~~l~~~ 362 (362)
T 1uas_A 355 KMYVLTPN 362 (362)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998875
No 4
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=99.95 E-value=4e-27 Score=274.38 Aligned_cols=358 Identities=16% Similarity=0.147 Sum_probs=227.7
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++|++++||+.|++.++.|++.|+. +++|+||||||...+|..+ + +..+
T Consensus 14 ~gwnsw~~~~~~~~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~g-----------------~---~~~~-- 71 (614)
T 3a21_A 14 MGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSAG-----------------N---ITVD-- 71 (614)
T ss_dssp EEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTTC-----------------C---BCCC--
T ss_pred eEEEchhhhCccCCHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcCCCC-----------------C---EEEC--
Confidence 9999999999999999999999999877775 7999999999975444210 0 1111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 72 ------------------~------------------------------------------------------------- 72 (614)
T 3a21_A 72 ------------------T------------------------------------------------------------- 72 (614)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------c-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.||+++++.||+ +|+| +|+|+.-....-+ . .+|...|
T Consensus 73 ------~~fP~gl~~l~~~i~~--~Glk-~gi~~~~~~~~~~-----~------~~p~~~~------------------- 113 (614)
T 3a21_A 73 ------AEWPGGMSAITAYIHS--KGLK-AGIYTDAGKDGCG-----Y------YYPTGRP------------------- 113 (614)
T ss_dssp ------TTSTTCHHHHHHHHHH--TTCE-EEEEEESSSSCHH-----H------HSCSSSC-------------------
T ss_pred ------cccCCcHHHHHHHHHH--CCCe-eEEEecCCCcccc-----c------cCCCCCC-------------------
Confidence 2478899999999999 5887 8999865211100 0 0111000
Q ss_pred eeeCCC-hhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccCCCCeEeecCCCcc-
Q 002925 460 GLVHPS-QADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLISSMQQCND- 537 (865)
Q Consensus 460 glv~p~-~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI~CMs~~~~- 537 (865)
..|. .+..||+..+++|++||||+||+|.+...+. . ...++..+++.+||..++ +..++.|+.|||+...
T Consensus 114 --~~pg~g~~~~~~~~~~~~~~wGvd~lK~D~~~~~~~-~---~~~~~~y~~~~~al~~~~--~~~gr~i~~s~c~~g~~ 185 (614)
T 3a21_A 114 --AAPGSGSEGHYDQDMLQFSTWGFDFVKVDWCGGDAE-G---LDAATTYKSISDAVGRAA--ATTGRPLTLSICNWGYQ 185 (614)
T ss_dssp --CCTTCSCTTCHHHHHHHHHHHTCSEEEEECHHHHHH-T---CCHHHHHHHHHHHHHHHH--HHHSCCCEEEECCTTTT
T ss_pred --CCCchhhHHHHHHHHHHHHHcCCcEEEecccCCccc-c---cchHHHHHHHHHHHHHHH--HhcCCCeEEEecCCccC
Confidence 1111 1457889999999999999999998754321 1 135667788888887654 3447889999987531
Q ss_pred -cccccccccccccccCCCCCCCCCCCCCCcccccchhhhhhhhcccccCCCcCCCCcccccccc-----chhhhhhhhh
Q 002925 538 -FFFLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIHCSYNSLWMGQFIQPDWDMFQSDHC-----CAKFHAGSRA 611 (865)
Q Consensus 538 -~~~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~~AyNSL~~g~~v~PDWDMF~S~H~-----~A~~HAaaRA 611 (865)
.+-.+.+...+||+|+|+++.... | .+|....+++.. ...++.++..|||+||+...+. ....|.++.|
T Consensus 186 ~~~~~~~~~~~~wR~~~Di~~~~~~--~--~~~~~~~~~~~~-~~~~~~~pg~~nD~Dml~~g~~~~t~~e~~~~~alwa 260 (614)
T 3a21_A 186 NPWNWAAGQAPLWRTSTDIIYYGNQ--P--SMTSLLSNFDQT-LHPTAQHTGYYNDPDMLMVGMDGFTAAQNRTHMNLWA 260 (614)
T ss_dssp CGGGTCTTTCSEEECSSCSCCTTSC--C--CHHHHHHHHHHH-CCTTTCBTTBEEECCSCCTTCTTCCHHHHHHHHHHHH
T ss_pred ChhhhhhccCccccccccccccccc--C--chHHHHHHHHHh-hhHHhhCCCcccCCCeeeeCCCCCCHHHHHHHHHHHH
Confidence 111245667799999999933110 1 001112222221 1223367789999999998764 3567999999
Q ss_pred ccCCCEEEecCCCCCchhhhhcccCCCCcccccccC--CCCCccccccCCCCCCCceEEEeecC---CcceEEEEEecCC
Q 002925 612 ICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQHF--ALPTRDCLFRNPLFDKKTILKIWNFN---KYGGVIGAFNCQG 686 (865)
Q Consensus 612 isGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~p--~~PtrDcLF~dp~~d~~slLKIwn~n---~~~gViG~FN~qg 686 (865)
|+|+|+++||.+.+++.+.|.-|. +-.++....- +.+-+ .+..++ +. +-||... ...-+||+||...
T Consensus 261 i~~sPL~~g~Dl~~~~~~~~~il~--n~e~ia~~qd~~g~~~~-~v~~~~---~~--~~vw~~~l~~~g~~~v~~~N~~~ 332 (614)
T 3a21_A 261 ISGAPLLAGNDLTTMTSETAGILK--NPEVIAVDQDSRGLQGV-KVAEDT---TG--LQAYGKVLSGTGNRAVVLLNRTS 332 (614)
T ss_dssp HHTCCEEECSCGGGCCHHHHHHHT--CHHHHHHHTCTTCCCCE-EEEEEE---TT--EEEEEEECSSSSCEEEEEEECSS
T ss_pred HHcCccEecCCcccCCHHHHHHhc--ChHHhhhcccccCCCcE-EEEecC---CC--eEEEEEEcCCCCcEEEEEEECCC
Confidence 999999999999999977655333 2223322211 11111 011111 11 4466543 2345899999754
Q ss_pred CCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEeecCe-EEEecCCCcceEEEecCCceEEEE
Q 002925 687 SGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQADK-IHLVTPKSEAIKITLQPSSFELFN 765 (865)
Q Consensus 687 agw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~sg~-l~~l~~~~~~l~vtL~~~~~Eilt 765 (865)
. +.+-.|+++++... ...|.|+..-+++ +... ...+.++|++++.-+|.
T Consensus 333 ~-----------------~~~~~~~l~~lg~~----------~~~~~v~dlw~~~~~~~~---~~~~~~~v~~h~~~~~~ 382 (614)
T 3a21_A 333 A-----------------AHDITVRWSDLGLT----------NASATVRDLWARQNVGTS---ATGYTASVPAGGSVMLT 382 (614)
T ss_dssp S-----------------CEEEEEEHHHHTBC----------SSCEEEEETTTTEEEEEE---SSEEEEEECTTCEEEEE
T ss_pred C-----------------CEEEEEEHHHhCCC----------CCceEEEECCCCCccccc---cceEEEEECCCeEEEEE
Confidence 2 23345666665321 0246666555553 2222 35688999999999999
Q ss_pred Eeeeee
Q 002925 766 FVPIKK 771 (865)
Q Consensus 766 ~~Pv~~ 771 (865)
+.|...
T Consensus 383 l~~~g~ 388 (614)
T 3a21_A 383 VTGGTE 388 (614)
T ss_dssp EESCCB
T ss_pred EcCCCC
Confidence 998764
No 5
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=99.95 E-value=3.2e-26 Score=256.19 Aligned_cols=351 Identities=17% Similarity=0.197 Sum_probs=219.4
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++|++++||+.|++.++.+++.|++ +++|+||||||...+|.. -++..+.
T Consensus 14 mgwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~--------------------G~~~~~~- 72 (417)
T 1szn_A 14 LGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVD--------------------GHIAPNA- 72 (417)
T ss_dssp EEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBT--------------------TBCCBCT-
T ss_pred EEEEchHhhCcCCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCC--------------------CCEEECc-
Confidence 9999999999999999999999999887777 899999999997544311 0111110
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
T Consensus 73 -------------------------------------------------------------------------------- 72 (417)
T 1szn_A 73 -------------------------------------------------------------------------------- 72 (417)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.||+.+++.|++ +|+| +|+|+.--..|-+ ..||.
T Consensus 73 ------~kFP~Gl~~l~~~i~~--~Glk-~Giw~~~g~~~c~----------------~~Pgs----------------- 110 (417)
T 1szn_A 73 ------TRFPDGIDGLAKKVHA--LGLK-LGIYSTAGTATCA----------------GYPAS----------------- 110 (417)
T ss_dssp ------TTCTTHHHHHHHHHHH--TTCE-EEEEEESSSBCTT----------------SCBCC-----------------
T ss_pred ------ccCCcCHHHHHHHHHH--cCCE-EEEEeCCCCchhc----------------cCcch-----------------
Confidence 2478899999999998 4887 8889862112211 11221
Q ss_pred eeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhcc-----------------------------CChHHHHHH
Q 002925 460 GLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEY-----------------------------GGRVELGKA 510 (865)
Q Consensus 460 glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~-----------------------------ggrv~la~a 510 (865)
+.+++..++.++++|||+||+|.++....+.+.| .+..+....
T Consensus 111 --------~~~~~~d~~~~~~wGvdylK~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~~~~p~~~~~~~~~~~~~~~~ 182 (417)
T 1szn_A 111 --------LGYEDVDAADFADWGVDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAE 182 (417)
T ss_dssp --------TTCHHHHHHHHHHTTCCEEEEECCCCCGGGSCSSBCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGSHHHH
T ss_pred --------HhHHHHHHHHHHHcCCCEEEECCCCCccccccccccccccccccccccccccccccccccccccccchhHHH
Confidence 1223334788999999999999885433222222 122212344
Q ss_pred HHHHHHHhhhhccCCCCeEeecCCCc--ccccccccccccccccCCCCCCCCCCCCCCcccccchhhhh-hhhcccccCC
Q 002925 511 YYKGLSNSLKKNFKGTGLISSMQQCN--DFFFLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIH-CSYNSLWMGQ 587 (865)
Q Consensus 511 y~~Al~~S~~~~F~g~~vI~CMs~~~--~~~~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~-~AyNSL~~g~ 587 (865)
.+++|++++.+.++ .|+.++|... .......+...+||+|+|+++. |....+|+. +++-.-+.+.
T Consensus 183 ~Y~~m~~aL~~~~~--~i~~~~C~~G~~~~~~w~~~~~n~wR~s~D~~d~----------w~~~~~i~~~~~~~~~~~~~ 250 (417)
T 1szn_A 183 RFGAMRNALAKQSH--EIVLSMCIWGQADVFSWGNSTGISWRMSDDISPN----------WGSVTRILNLNSFKLNSVDF 250 (417)
T ss_dssp HHHHHHHHHHTSSS--CCEEEECCTTGGGHHHHGGGTCSEEECSSCCCSS----------HHHHHHHHHHHHTCGGGCBT
T ss_pred HHHHHHHHHHHhCC--CEEEEeCCCCCCcchhhHhhcccceeecCCcccc----------HHHHHHHHHHHhhhcccccC
Confidence 55789998888776 4666555531 1111245678899999999976 533334544 3444444555
Q ss_pred CcCCCCccccccc-----cchhhhhhhhhccCCCEEEecCCCCCc---hhhhh--ccc--CCCCcccccccCCCCCcccc
Q 002925 588 FIQPDWDMFQSDH-----CCAKFHAGSRAICGGPVYVSDSVGGHD---FDLLK--QLV--YPDGTIPRCQHFALPTRDCL 655 (865)
Q Consensus 588 ~v~PDWDMF~S~H-----~~A~~HAaaRAisGGPVYvSD~pG~hd---f~LLk--~Lv--lpdG~vlr~~~p~~PtrDcL 655 (865)
..|+|+||+...+ .-.+.|.+..|++|+|++|||.+.+-+ .++|+ .++ -.|... -.+++|-+--.
T Consensus 251 g~~~D~DmL~vg~~~~t~~E~r~~~alwa~~gspL~ig~dl~~l~~~~~~~L~N~eviav~qd~~l---g~~~~~v~w~~ 327 (417)
T 1szn_A 251 WGHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKHLLAFNQDSVY---GQPATPYKWGI 327 (417)
T ss_dssp TBEEECCSCCTTCTTCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHTCHHHHHHHTCSSC---CSCCEEEECSS
T ss_pred ccccCCcccccCCCCCCHHHHHHHHHHHHHhCCceEecCCcccCCHHHHHHhcChHHHhhcccccc---CcceEEeeccc
Confidence 6899999987543 233579999999999999999988654 44444 221 123200 01122110000
Q ss_pred ccCCCCCCCceEEEeec--CCcceEEEEEecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEE
Q 002925 656 FRNPLFDKKTILKIWNF--NKYGGVIGAFNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYI 733 (865)
Q Consensus 656 F~dp~~d~~slLKIwn~--n~~~gViG~FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~v 733 (865)
-.|+.++...-+-||.- ... -+|++||-.+ .+.+-.+++.+++.+. .+.|-
T Consensus 328 ~p~~~~~~~~~~~vw~~~l~~g-~~v~l~N~~~-----------------~~~~~~~~~~~l~gl~---------~~~~~ 380 (417)
T 1szn_A 328 NPDWTFNVTYPAEFWAGPSSKG-HLVLMVNTLD-----------------ITATKEAKWNEIPGLS---------AGHYE 380 (417)
T ss_dssp SCTTCCCSSSCCCEEEECCTTC-EEEEEECCSS-----------------SCEEEEECGGGSTTCC---------SSEEE
T ss_pred ccccccCCCCCccEEEEEcCCC-cEEEEEECCC-----------------CceeEEeCHHHcCCCC---------CCceE
Confidence 00111101111345543 222 6899999753 2344456777775441 12677
Q ss_pred EEEeecCeEEEecCCCcceEEEecCCceEEEEEeee
Q 002925 734 VYLSQADKIHLVTPKSEAIKITLQPSSFELFNFVPI 769 (865)
Q Consensus 734 vys~~sg~l~~l~~~~~~l~vtL~~~~~Eilt~~Pv 769 (865)
|+.-=+++-.-. ...+.++|++++.-+|.+.|.
T Consensus 381 v~DlW~~~~~g~---~~~~~~~v~~h~~~l~~l~~~ 413 (417)
T 1szn_A 381 VRDVWSDKDLGC---LSSYKAAVAAHDTAVILVGKK 413 (417)
T ss_dssp EEETTTTEEEEE---ESSEEEEECTTCEEEEEEEEE
T ss_pred EEECcCCCcccc---cceEEEEECCCeEEEEEEEcc
Confidence 887766664322 356999999999999999886
No 6
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=99.94 E-value=2.5e-25 Score=247.44 Aligned_cols=359 Identities=18% Similarity=0.196 Sum_probs=222.7
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++|++++||+.|++.++.+++.|++ +++|+||||||...++..+ ++..+
T Consensus 11 ~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~~G--------------------~~~~~-- 68 (397)
T 3a5v_A 11 MGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSK--------------------TLLAD-- 68 (397)
T ss_dssp EEEESHHHHGGGCCHHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCTTS--------------------CCCBC--
T ss_pred EEEECHHHhCcCCCHHHHHHHHHHHHHcCCcccCceEEEECCCcCCCCCCCCC--------------------CeEEC--
Confidence 9999999999999999999999999998744 7999999999975443210 01111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 69 ------------------~------------------------------------------------------------- 69 (397)
T 3a5v_A 69 ------------------P------------------------------------------------------------- 69 (397)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.||+.+++.||+ +|+| +++|+.- +.. .+...||
T Consensus 70 ------~kFP~Gl~~l~~~i~~--~Glk-~Giw~~p---------g~~-------tc~~~pg------------------ 106 (397)
T 3a5v_A 70 ------TKFPRGIKPLVDDIHN--LGLK-AGIYSSA---------GTL-------TCGGHIA------------------ 106 (397)
T ss_dssp ------TTCTTCHHHHHHHHHH--TTCE-EEEEEES---------SSB-------CTTSCBC------------------
T ss_pred ------hcCCcCHHHHHHHHHH--cCCE-EEEEecC---------CCC-------ccCCCHH------------------
Confidence 2478899999999998 5887 8999872 110 0011121
Q ss_pred eeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccCCCCeEeecCCC-ccc
Q 002925 460 GLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLISSMQQC-NDF 538 (865)
Q Consensus 460 glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI~CMs~~-~~~ 538 (865)
+..|++..++.++++|||+||+|.....+. .+. ..+..+.+++|.+++.+.++ +|+.++|.. .++
T Consensus 107 -------~~~~~~~~~~~~~~wGvdyvK~D~~~~~~~----~~~-~~~~~~~y~~m~~~L~~~~~--~i~~~~c~~G~~~ 172 (397)
T 3a5v_A 107 -------SLGYEDIDAKTWAKWGIDYLKYDNCYNQGQ----SGT-PKLSYDRYKAMGNALNKTGR--PMLYSLCNWGEDG 172 (397)
T ss_dssp -------CTTCHHHHHHHHHHHTCCEEEEECTTCTTC----CSS-HHHHHHHHHHHHHHHHHTCS--CCEEEECSTTTTC
T ss_pred -------HHHHHHHHHHHHHHcCCCEEEECCCcCCCc----CCC-cchhHHHHHHHHHHHHhhCC--CcEEEeccCCCCc
Confidence 245677778999999999999998754432 222 23323334688888888876 477777763 222
Q ss_pred c-cccccccccccccCCCCCCCCCCCCC-------Ccccccchhhhhh----hhcccccCCCcCCCCccccccc---cch
Q 002925 539 F-FLGTRQISMGRVGDDFWFQDPNGDPN-------GVYWLQGVHMIHC----SYNSLWMGQFIQPDWDMFQSDH---CCA 603 (865)
Q Consensus 539 ~-~~~~~~~~v~R~SDDF~p~dp~s~p~-------~~~w~~~~Hi~~~----AyNSL~~g~~v~PDWDMF~S~H---~~A 603 (865)
- -...+...+||+|+|++|....-+.. -.+-....++... +.-+-+.++..|+|+||+...+ ...
T Consensus 173 ~~~w~~~~~n~wR~s~Di~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pg~~nD~Dml~vg~~~lt~~ 252 (397)
T 3a5v_A 173 PWNFASTISNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQE 252 (397)
T ss_dssp HHHHSTTTCSEEECSSCBCSCSSCCCTTSCCCSSCCSCCCSCBCHHHHHHHHHHHGGGCBTTBEEECCCBCTTSSSSCHH
T ss_pred hhhHHhhcCcEEEEcCCcCCccccccccccccccccccccccchHHHHHHHhhhhHhhcCCCccCCccccccCCCCCCHH
Confidence 1 12456778999999999864421000 0000000122222 2223344667899999998755 334
Q ss_pred h--hhhhhhhccCCCEEEecCCCCCchhhhhcccCCCCcccccccC--CCCCccccccCCCCCCCceEEEeecC--Ccce
Q 002925 604 K--FHAGSRAICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQHF--ALPTRDCLFRNPLFDKKTILKIWNFN--KYGG 677 (865)
Q Consensus 604 ~--~HAaaRAisGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~p--~~PtrDcLF~dp~~d~~slLKIwn~n--~~~g 677 (865)
+ .|.+..||+++|+++||...+.+-+-|.=|. +-.++....- +.+-+ .++ ..+. +-||... +..-
T Consensus 253 E~~~~~alwai~~sPL~~g~Dl~~~~~~~~~il~--N~e~iai~qd~~g~~~~-~v~----~~g~--~~vw~~~l~~g~~ 323 (397)
T 3a5v_A 253 EYRVHYTIWAALKSPLILGNDVTNITNTTKEIIM--NKEVIAVNQDSSFSPAN-RIW----VKGD--QQLFSGNLANNTQ 323 (397)
T ss_dssp HHHHHHHHHHHTTCCEEECSCSSSCCHHHHHHHC--CHHHHHHHTCTTCCCCE-EEE----EETT--EEEEEEEETTTEE
T ss_pred HHHHHHHHHHHhcCceEecCchhhCCHHHHHHhc--CHHHHhhccccccccce-eee----cCCC--ceEEEEECCCCCE
Confidence 4 4999999999999999999987744333222 1111111110 11111 011 1122 4466653 2234
Q ss_pred EEEEEecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEeecCe-EEEecCCCcceEEEe
Q 002925 678 VIGAFNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQADK-IHLVTPKSEAIKITL 756 (865)
Q Consensus 678 ViG~FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~sg~-l~~l~~~~~~l~vtL 756 (865)
+||+||-... +.+-+|+++++..+..+ +...++.|-|+.-=+++ +... ...+.++|
T Consensus 324 ~v~~~N~~~~-----------------~~~~~v~l~~lg~~~~~---~~~~~~~~~v~DlW~~~~~g~~---~~~~~~~v 380 (397)
T 3a5v_A 324 VVILLNAGDS-----------------AAKMTATWDDIWVYNLP---NVDSSRSIEVRDLWKQKSLGNF---SNHITLDV 380 (397)
T ss_dssp EEEEEECSSS-----------------CEEEEEEHHHHTGGGTT---SBCTTCCEEEEETTTTEEEEEE---CSEEEEEE
T ss_pred EEEEEECCCC-----------------CeEEEEEHHHhcCcccc---ccCCCCceEEEECCCCCccccc---cceEEEEE
Confidence 8999997542 23345666666332100 01123467788776766 3343 35689999
Q ss_pred cCCceEEEEEeeeee
Q 002925 757 QPSSFELFNFVPIKK 771 (865)
Q Consensus 757 ~~~~~Eilt~~Pv~~ 771 (865)
++++.-+|.+.|+..
T Consensus 381 ~~hg~~l~~l~~~~~ 395 (397)
T 3a5v_A 381 PAHGVRLLKFMDSAT 395 (397)
T ss_dssp CTTEEEEEEESSCCB
T ss_pred CCCeEEEEEEEecCC
Confidence 999999999999753
No 7
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=99.93 E-value=2.8e-25 Score=244.47 Aligned_cols=343 Identities=15% Similarity=0.190 Sum_probs=215.0
Q ss_pred ccccccccccccCC----------HHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccc
Q 002925 223 FGWCTWDAFYLTVE----------PAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTA 289 (865)
Q Consensus 223 lGWCTW~af~~~vt----------e~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~ 289 (865)
|||||||+|+++++ |+.|++.++.|++.|+. ++||+||||||. .+|..+
T Consensus 11 mGWnSW~~~~~~i~~~~~~~~~~se~~i~~~ad~~~~~gl~~~Gy~yv~iDdgW~~-~rd~~G----------------- 72 (400)
T 4do4_A 11 MGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIG-GRDASG----------------- 72 (400)
T ss_dssp EEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHSSHHHHTCCEEECCSSCEE-EECTTC-----------------
T ss_pred CcccchHhhccccCccccccccccHHHHHHHHHHHHHCcchhhCCeEEEECCCccc-CCCCCC-----------------
Confidence 99999999999985 99999999999999874 799999999996 232110
Q ss_pred cccccccchhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcC
Q 002925 290 RLHRLDESEKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGG 369 (865)
Q Consensus 290 rL~~f~en~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g 369 (865)
||. ++ +
T Consensus 73 ~~~---~d--------------------~--------------------------------------------------- 78 (400)
T 4do4_A 73 RLM---PD--------------------P--------------------------------------------------- 78 (400)
T ss_dssp CEE---EC--------------------T---------------------------------------------------
T ss_pred CEe---EC--------------------c---------------------------------------------------
Confidence 111 11 1
Q ss_pred CCCCCCCCCCCCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCccccc
Q 002925 370 EESGNSVNEGCGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDL 449 (865)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~ 449 (865)
+.||.|||.+++.|++ +|+| .|+|..-..+|-+-. |
T Consensus 79 ----------------~rFP~G~k~ladyih~--~Glk-~Giy~~~~~~~c~g~----------------~--------- 114 (400)
T 4do4_A 79 ----------------KRFPHGIPFLADYVHS--LGLK-LGIYADMGNFTCMGY----------------P--------- 114 (400)
T ss_dssp ----------------TTSTTCHHHHHHHHHH--TTCE-EEEEEEBSSBCTTSC----------------B---------
T ss_pred ----------------ccCCcccHHHHHHHHH--CCce-EEEecCCCCcccCCC----------------C---------
Confidence 2478899999999998 5787 677743221111100 1
Q ss_pred ceeeeecCCceeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccCCCCeE
Q 002925 450 AVVKIVEGGIGLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLI 529 (865)
Q Consensus 450 a~~~~~~~g~glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI 529 (865)
.....+++...+.+++||||+||+|....- ......++.++..++.++ ++.+.
T Consensus 115 ---------------~~~~~~~~~da~~~a~wGvdylK~D~~~~~----------~~~~~~~~~~~~~~~~~~--g~~i~ 167 (400)
T 4do4_A 115 ---------------GTTLDKVVQDAQTFAEWKVDMLKLDGCFST----------PEERAQGYPKMAAALNAT--GRPIA 167 (400)
T ss_dssp ---------------CBCGGGHHHHHHHHHHTTCCEEEEECTTCC----------HHHHHHHHHHHHHHHHHT--CSCCE
T ss_pred ---------------chhHhHHHHHHHHHHHhCCceEeeccCcCC----------hhhhhhhhhHHHHHHHHh--Cccce
Confidence 112344555667889999999999975421 111223334444444433 45555
Q ss_pred eecCCCc-cccc-------ccccccccccccCCCCCCCCCCCCCCcccccchhhhh-----hhhcccccCCCcCCCCccc
Q 002925 530 SSMQQCN-DFFF-------LGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIH-----CSYNSLWMGQFIQPDWDMF 596 (865)
Q Consensus 530 ~CMs~~~-~~~~-------~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~-----~AyNSL~~g~~v~PDWDMF 596 (865)
.+.+... +... .......++|+++|+++. |.....+.. +.+...+.+...++|.||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~Di~~~----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~l 237 (400)
T 4do4_A 168 FSCSWPAYEGGLPPRVQYSLLADICNLWRNYDDIQDS----------WWSVLSILNWFVEHQDILQPVAGPGHWNDPDML 237 (400)
T ss_dssp EEECGGGGTTSSTTTCCHHHHHHHCSEEECSCCCCSS----------HHHHHHHHHHHHHTHHHHGGGCBTTBEEECCCC
T ss_pred ecccccccccccccccchhhcccccccccccCcccCc----------ccchhhHHHHHHHHhHHhhhhcCCCCCCCCccc
Confidence 5444211 1000 113456789999999987 432222222 2223334566789999999
Q ss_pred ccccc-----chhhhhhhhhccCCCEEEecCCCCCchhhhhcccCCCCcccccccC--CCCCccccccCCCCCCCceEEE
Q 002925 597 QSDHC-----CAKFHAGSRAICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQHF--ALPTRDCLFRNPLFDKKTILKI 669 (865)
Q Consensus 597 ~S~H~-----~A~~HAaaRAisGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~p--~~PtrDcLF~dp~~d~~slLKI 669 (865)
+..+. -...|.+.+|+.++|+++++.+.+.+-+-++-|. +-.++..... |.+. +.++.+ ..-.-|
T Consensus 238 ~~~~~~~t~~e~~t~~slwa~~~spL~~g~Dl~~~~~~~~~lL~--N~evia~~qd~~g~~~-~~v~~~-----~~~~~v 309 (400)
T 4do4_A 238 LIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQ--NPLMIKINQDPLGIQG-RRIHKE-----KSLIEV 309 (400)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHTTCCEEECSCTTTCCHHHHHHHT--CHHHHHHHTCTTCCCC-EEEEEC-----TTSEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCEEecCCcccCCHHHHHHhh--ChhhhhhcccccccCc-eEeecC-----CCceEE
Confidence 97543 4578999999999999999988887765554333 2233322111 1111 122222 122456
Q ss_pred eecC--CcceEEEEEecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEeecCeE-EEec
Q 002925 670 WNFN--KYGGVIGAFNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQADKI-HLVT 746 (865)
Q Consensus 670 wn~n--~~~gViG~FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~sg~l-~~l~ 746 (865)
|... ..+.+|++||..+. .+.+-.|+++++... ....|.|+..-+++- ..++
T Consensus 310 w~~~~~~g~~~va~~N~~~~----------------~~~~~~~~l~~lGl~---------~~~~y~vrDlw~~~~~g~~~ 364 (400)
T 4do4_A 310 YMRPLSNKASALVFFSCRTD----------------MPYRYHSSLGQLNFT---------GSVIYEAQDVYSGDIISGLR 364 (400)
T ss_dssp EEEECGGGCEEEEEEECCSS----------------SCEEEEEEGGGGTCC---------TTCEEEEEETTTCCEEEEEC
T ss_pred EEEEcCCCCEEEEEEECCCC----------------CcEEEEEEHHHcCCC---------CCCeEEEEECcCCceecccc
Confidence 7654 23568999997542 244556777776431 235688887666663 4454
Q ss_pred CCCcceEEEecCCceEEEEEeeeeee
Q 002925 747 PKSEAIKITLQPSSFELFNFVPIKKV 772 (865)
Q Consensus 747 ~~~~~l~vtL~~~~~Eilt~~Pv~~~ 772 (865)
.+..++++|+++|..+|.++||+++
T Consensus 365 -~~~~~~~~v~phg~~l~~ltPvk~~ 389 (400)
T 4do4_A 365 -DETNFTVIINPSGVVMWYLYPIKNL 389 (400)
T ss_dssp -TTCEEEEEECTTCEEEEEEEEEC--
T ss_pred -CCceEEEEECCCeEEEEEEEecCcc
Confidence 4578999999999999999999875
No 8
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=99.91 E-value=3.9e-23 Score=230.12 Aligned_cols=344 Identities=17% Similarity=0.215 Sum_probs=220.4
Q ss_pred cccccccccccc----------CCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccc
Q 002925 223 FGWCTWDAFYLT----------VEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTA 289 (865)
Q Consensus 223 lGWCTW~af~~~----------vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~ 289 (865)
|||||||+|+++ +||+.|++.++.|++.|++ ++|++||||||...+|.++
T Consensus 11 mGWnsW~~~~~~~d~~~~~~~~i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~G----------------- 73 (404)
T 3hg3_A 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEG----------------- 73 (404)
T ss_dssp EEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTS-----------------
T ss_pred eEEEcHhhhccCccccccccCCcCHHHHHHHHHHHHHCCcHhhCCeEEEECCCcCCCCCCCCC-----------------
Confidence 999999999998 7999999999999988776 7999999999986554221
Q ss_pred cccccccchhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcC
Q 002925 290 RLHRLDESEKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGG 369 (865)
Q Consensus 290 rL~~f~en~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g 369 (865)
+| ..+ |
T Consensus 74 ~~---~~~--------------------~--------------------------------------------------- 79 (404)
T 3hg3_A 74 RL---QAD--------------------P--------------------------------------------------- 79 (404)
T ss_dssp CC---CBC--------------------T---------------------------------------------------
T ss_pred Ce---eeC--------------------h---------------------------------------------------
Confidence 01 111 1
Q ss_pred CCCCCCCCCCCCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCccccc
Q 002925 370 EESGNSVNEGCGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDL 449 (865)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~ 449 (865)
+.||.||+.+++.|++ .|+| +|+|... |.. . +..-||
T Consensus 80 ----------------~kFP~Gl~~l~~~ih~--~Glk-~Giw~~~-----g~~------t-----C~~~pG-------- 116 (404)
T 3hg3_A 80 ----------------QRFPHGIRQLANYVHS--KGLK-LGIYADV-----GNK------T-----CAGFPG-------- 116 (404)
T ss_dssp ----------------TTSTTHHHHHHHHHHH--TTCE-EEEEEES-----SSB------C-----TTSSBC--------
T ss_pred ----------------hhcCCCHHHHHHHHHH--CCCe-eEEEecC-----Ccc------c-----cCCCCc--------
Confidence 2578899999999998 5787 8999531 110 0 000111
Q ss_pred ceeeeecCCceeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhhccCCCCeE
Q 002925 450 AVVKIVEGGIGLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLI 529 (865)
Q Consensus 450 a~~~~~~~g~glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI 529 (865)
.+.+|+.-.+.+++|||||||+|....-.. ....+-.+++.+||.++ |+.|+
T Consensus 117 -----------------s~~~~~~da~~fa~WGvDylK~D~C~~~~~-----~~~~~~y~~m~~AL~~t------GRpi~ 168 (404)
T 3hg3_A 117 -----------------SFGYYDIDAQTFADWGVDLLKFAGCYCDSL-----ENLADGYKHMSLALNRT------GRSIV 168 (404)
T ss_dssp -----------------CTTCHHHHHHHHHHHTCCEEEEECCSCSCH-----HHHHHHHHHHHHHHHHT------TCCCE
T ss_pred -----------------cHHHHHHHHHHHHHhCCcEEEecCcCCCcc-----hhHHHHHHHHHHHHHhc------CCCEE
Confidence 245677777889999999999998542110 00112234455666655 88888
Q ss_pred eecCCCccccccc---------ccccccccccCCCCCCCCCCCCCCcccccchhhhhh-h----hcccccCCCcCCCCcc
Q 002925 530 SSMQQCNDFFFLG---------TRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIHC-S----YNSLWMGQFIQPDWDM 595 (865)
Q Consensus 530 ~CMs~~~~~~~~~---------~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~~-A----yNSL~~g~~v~PDWDM 595 (865)
.+ |.-+.+. .+ .+..++||+++|+++. |..-.+|+.. + .-+-+.+...|+|.||
T Consensus 169 ~s-c~w~~~~-~~~~~~~~~~~~~~~n~WR~~~Di~d~----------W~sv~~i~~~~~~~~~~~~~~agpG~wnDpDM 236 (404)
T 3hg3_A 169 YS-CEWPLYM-WPFQKPNYTEIRQYCNHWRNFADIDDS----------WKSIKSILDWTSFNQERIVDVAGPGGWNDPDM 236 (404)
T ss_dssp EE-ECTGGGG-TTTSCCCHHHHHHHCSEEECSCCCCSS----------HHHHHHHHHHHHHTHHHHTTTCBTTBEEECCC
T ss_pred EE-eCCCccc-ccccccchHHHhhhCcEEEecCCcCcc----------hHHHHHHHHHHhhhhhhhHhhcCCCCcCCCcc
Confidence 87 4323221 11 2456899999999987 6444455432 2 2244567789999999
Q ss_pred ccccc-----cchhhhhhhhhccCCCEEEecCCCCCchhhhhcccCCCCccccccc--CCCCCccccccCCCCCCCceEE
Q 002925 596 FQSDH-----CCAKFHAGSRAICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQH--FALPTRDCLFRNPLFDKKTILK 668 (865)
Q Consensus 596 F~S~H-----~~A~~HAaaRAisGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~--p~~PtrDcLF~dp~~d~~slLK 668 (865)
+.-.+ .-...|.+.-||.+.|+.+++..-+-+-+-|.=|. +-.|+.... -|.+.+ .++.+ +. +-
T Consensus 237 L~vGn~glT~~E~rthfslWai~~sPLiiG~Dl~~~~~~tl~iLt--N~evIAinQD~lG~q~~-~v~~~----~~--~~ 307 (404)
T 3hg3_A 237 LVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQ--DKDVIAINQDPLGKQGY-QLRQG----DN--FE 307 (404)
T ss_dssp BCTTSSSCCHHHHHHHHHHHHHTTCCEEECSCTTSCCHHHHHHHT--CHHHHHHHTCTTCCCCE-EEEEE----TT--EE
T ss_pred eecCCCCCCHHHHHHHHHHHHHhcCceEecCCcccCCHHHHHHhc--CHHHHhhhccccCCcce-EEEec----CC--eE
Confidence 98654 35688999999999999999987766544443332 222222211 122222 12221 22 56
Q ss_pred EeecC--CcceEEEEEecCCCCccchhhhhccccccccceeeeeecCcccccchhhcccCCCCceEEEEEeecCeE-EEe
Q 002925 669 IWNFN--KYGGVIGAFNCQGSGWDMKERRIKGYAECYKPVSGTVHVTDIEWDQNAEAAHLGEAEEYIVYLSQADKI-HLV 745 (865)
Q Consensus 669 Iwn~n--~~~gViG~FN~qgagw~~~~~~~~~~~~~~~~~s~~v~~~Dv~~~~~~~~~~~~~~~~~vvys~~sg~l-~~l 745 (865)
||.-. ...-+|++||....+ .+.+-+++++++.... ....+.|-|+.-=+++- ...
T Consensus 308 VW~~~l~~g~~aValfN~~~~~---------------~~~~vtv~~~~lGl~~------~~~~~~~~vrDLW~~~~lg~~ 366 (404)
T 3hg3_A 308 VWERPLSGLAWAVAMINRQEIG---------------GPRSYTIAVASLGKGV------ACNPACFITQLLPVKRKLGFY 366 (404)
T ss_dssp EEEEECSTTCEEEEEEECCCSS---------------SCEEEEEEGGGSGGGT------TTSSEEEEEEEESSCEEEEEE
T ss_pred EEEEECCCCCEEEEEEEcCCCC---------------CceEEEEEHHHcCCcc------cCCCCceEEEECCCCcccccc
Confidence 77653 234489999976411 1334456677774310 01235677777766663 333
Q ss_pred cCCCcceEEEecCCceEEEEEeeeee
Q 002925 746 TPKSEAIKITLQPSSFELFNFVPIKK 771 (865)
Q Consensus 746 ~~~~~~l~vtL~~~~~Eilt~~Pv~~ 771 (865)
+ ....+.++|+++|.-+|.++|...
T Consensus 367 ~-~~~~~~~~V~pHg~~llrlt~~~~ 391 (404)
T 3hg3_A 367 E-WTSRLRSHINPTGTVLLQLENTMQ 391 (404)
T ss_dssp E-TTCEEEEEECTTCEEEEEEEEHHH
T ss_pred c-ccceEEEEECCCeEEEEEEEcCCc
Confidence 3 247899999999999999999754
No 9
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=99.87 E-value=1.1e-21 Score=221.61 Aligned_cols=299 Identities=16% Similarity=0.208 Sum_probs=185.5
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhCCCC---CcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 223 FGWCTWDAFYLTVEPAGVWQGVKDFVDGGIS---PRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 223 lGWCTW~af~~~vte~~I~~~l~~L~~~G~~---~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++|++++||+.|++.++.|++.|++ ++||+||||||. .+|..+ +| ..+
T Consensus 32 mGWNSW~~~~~~i~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~-~rd~~G-----------------~~---~~d-- 88 (479)
T 3lrk_A 32 MGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSS-GRDSDG-----------------FL---VAD-- 88 (479)
T ss_dssp EEEESHHHHTTCCCHHHHHHHHHHHHHTTCGGGTCCEEECCSSCEE-EECTTS-----------------CE---EEC--
T ss_pred eEEEchHhhCcCCCHHHHHHHHHHHHhcCccccCceEEEECCcccc-ccCCCC-----------------CE---ecC--
Confidence 9999999999999999999999999998864 789999999997 333210 11 111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 89 ------------------~------------------------------------------------------------- 89 (479)
T 3lrk_A 89 ------------------E------------------------------------------------------------- 89 (479)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.|||.+++.|++ .|+| +|+|..--=+|-+ .-||
T Consensus 90 ------~kFP~Glk~Lad~ih~--~GlK-fGIw~~pG~~tC~----------------~~pG------------------ 126 (479)
T 3lrk_A 90 ------QKFPNGMGHVADHLHN--NSFL-FGMYSSAGEYTCA----------------GYPG------------------ 126 (479)
T ss_dssp ------TTCTTCHHHHHHHHHH--TTCE-EEEEEESSSBCTT----------------SSBC------------------
T ss_pred ------hhcCCCHHHHHHHHHH--CCCe-eEEEecCcccccc----------------CCCc------------------
Confidence 2478899999999998 5887 8999764212111 1122
Q ss_pred eeeCCChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhccCCh---HHHHHHHHHHHHHhhhhccCCCCeEeecCCCc
Q 002925 460 GLVHPSQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGR---VELGKAYYKGLSNSLKKNFKGTGLISSMQQCN 536 (865)
Q Consensus 460 glv~p~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggr---v~la~ay~~Al~~S~~~~F~g~~vI~CMs~~~ 536 (865)
...|++.-.+.+++|||||||.|...... .++.. .+-..++++||.++ |+.|+.++|.-.
T Consensus 127 -------sl~~~~~da~~fa~WGVDylK~D~c~~~~----~~~~~~~~~~~y~~m~~AL~~t------GRpI~~Slc~Wg 189 (479)
T 3lrk_A 127 -------SLGREEEDAQFFANNRVDYLKYDNCYNKG----QFGTPEISYHRYKAMSDALNKT------GRPVFYSLCNWG 189 (479)
T ss_dssp -------CTTCHHHHHHHHHHTTCCEEEEECTTCTT----CCSSHHHHHHHHHHHHHHHHHH------CSCCEEEECSTT
T ss_pred -------hhHHHHHHHHHHHHhCCcEEEEccCCCcc----ccCCcchhHHHHHHHHHHHHHh------CCCeEEEeccCc
Confidence 23455666789999999999999754321 11221 12234455666666 889999998732
Q ss_pred -c-cccccccccccccccCCCCCCCCCCC------------CCCcccccchhhhh-hhhcccccCCCcCCCCccccccc-
Q 002925 537 -D-FFFLGTRQISMGRVGDDFWFQDPNGD------------PNGVYWLQGVHMIH-CSYNSLWMGQFIQPDWDMFQSDH- 600 (865)
Q Consensus 537 -~-~~~~~~~~~~v~R~SDDF~p~dp~s~------------p~~~~w~~~~Hi~~-~AyNSL~~g~~v~PDWDMF~S~H- 600 (865)
+ ......+..++||+|+|+++.-..-+ -|.-||..-..++. ++.-+-+.++..|+|.||+.-.+
T Consensus 190 ~~~~~~w~~~~~n~WR~s~DI~d~W~~~~~~~~~~~~~~~~~~~g~~~sv~~i~~~~~~~~~~agpG~wNDpDML~vGn~ 269 (479)
T 3lrk_A 190 QDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVG 269 (479)
T ss_dssp TTTHHHHSTTTCSEEECSSCBCSCSSCCCTTSCSCTTCSSCSCCCSCBCHHHHHHHHGGGGGGCBTTBEEECCSBCTTST
T ss_pred cCchhhhhhhhCCeeeecCCccccccccccccccccccccccccccchhHHHHHHHhhhhhhccCCCCCCCCCeEeeCCC
Confidence 1 11123566899999999987632100 00001111123332 23334456778899999998755
Q ss_pred ----cchhhhhhhhhccCCCEEEecCCCCCchhhhhcccCCCCccccccc--CCCCCccccccC--CCCC--CCceEEEe
Q 002925 601 ----CCAKFHAGSRAICGGPVYVSDSVGGHDFDLLKQLVYPDGTIPRCQH--FALPTRDCLFRN--PLFD--KKTILKIW 670 (865)
Q Consensus 601 ----~~A~~HAaaRAisGGPVYvSD~pG~hdf~LLk~LvlpdG~vlr~~~--p~~PtrDcLF~d--p~~d--~~slLKIw 670 (865)
.-...|.+.-||.+.|+.+++-.-+-+-+-|.=|. +-.|+.... -|.+-+ .+..+ |-.| +..-+-||
T Consensus 270 glT~~E~rthfslWai~~SPLiiG~DL~~~~~~tl~iLt--N~evIAINQD~lG~q~~-~v~~~~~~~~d~~~~~~~~VW 346 (479)
T 3lrk_A 270 NLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYS--QASVIAINQDSNGIPAT-RVWRYYVSDTDEYGQGEIQMW 346 (479)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHT--CHHHHHHHTCTTCCCCE-EEEEEECSCCCTTSCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCceEecCCcccCCHHHHHHhc--CHHHHHHhccccCCceE-EEeeccCccccccCCCCcEEE
Confidence 35688999999999999999877655543333222 222222211 011111 01110 1111 12346788
Q ss_pred ecC--CcceEEEEEecCC
Q 002925 671 NFN--KYGGVIGAFNCQG 686 (865)
Q Consensus 671 n~n--~~~gViG~FN~qg 686 (865)
.-. ...-+|++||-..
T Consensus 347 ~~~l~~G~~aValfN~~~ 364 (479)
T 3lrk_A 347 SGPLDNGDQVVALLNGGS 364 (479)
T ss_dssp EEECTTSCEEEEEEECSS
T ss_pred EEECCCCCEEEEEEECCC
Confidence 753 3345999999754
No 10
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=99.70 E-value=1.2e-15 Score=181.28 Aligned_cols=385 Identities=15% Similarity=0.133 Sum_probs=203.7
Q ss_pred cCCceeeccCCCCCeEEEEEecC----Cccccc-cccc-eEEEEeecCCHHHHHHHHHH-HHHhhcccccccccccCCcc
Q 002925 147 ESSFRSALHPGTDDHVMICAESG----STRLKA-SSFD-AIAYVHVSDNPYNIMKEACS-ALRVHLNTFRLLEEKQVPSL 219 (865)
Q Consensus 147 ~g~fra~L~~~~~~~l~i~~esg----~~~v~~-~~~~-~~~~v~~g~dp~~vi~eA~k-~v~~~~~tf~~~e~k~~P~~ 219 (865)
.|+|+..+.....+...+.+.-. +-..+. .+|. .-+++..+++=.+-+.+++. .++.++.. +....++.|
T Consensus 254 sGn~~~~~e~~~~~~~~~~~G~~~~~~~~~L~pGesf~tp~~~~~~s~~g~~~~s~~~h~~~r~~~~~-~~~~~~~rP-- 330 (729)
T 4fnq_A 254 SGNFLAQVEVDQFHTARVSMGINPFDFTWLLQPGESFQTPEVVMVYSDQGLNGMSQTYHELYRTRLAR-GAFRDRERP-- 330 (729)
T ss_dssp SSCEEEEEEECTTCCEEEEEEECCTTCCEEECTTCEEECCCEEEEEESBHHHHHHHHHHHHHHHHTSC-STTTTSCCC--
T ss_pred CCCceEEEEEcCCCCEEEEEeecCCCCcEEECCCCEEEeeEEEEEEEcCCHHHHHHHHHHHHHHhcCC-CcccccCce--
Confidence 67888888776666655544311 111111 1121 11233335544555555544 45665432 122345566
Q ss_pred cccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 220 VDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 220 ~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
++||||+++|.++||++|++.++.+++.|+ ++++||||||.-.++..+ .+=++..+
T Consensus 331 ---v~~NsW~a~~~d~~e~~i~~~ad~aa~lG~--e~fviDDGWf~~r~~d~~-----------------~lGdW~~d-- 386 (729)
T 4fnq_A 331 ---ILINNWEATYFDFNEEKLVNIAKTEAELGI--ELFVLDDGWFGKRDDDRR-----------------SLGDWIVN-- 386 (729)
T ss_dssp ---CEEECSTTTTTCCCHHHHHHHHHHHHHHTC--CEEEECSCCBTTCCSTTS-----------------CTTCCSBC--
T ss_pred ---eEEcccccccccCCHHHHHHHHHHHHhcCc--cEEEEcceeecCCCCCcc-----------------cCCcEEEC--
Confidence 999999999999999999999999999665 999999999975332110 01111111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 387 ------------------~------------------------------------------------------------- 387 (729)
T 4fnq_A 387 ------------------R------------------------------------------------------------- 387 (729)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.|||.+++.|++ .|+| .|+|-..- -+.|+++-|+..--.....++-.. .....-
T Consensus 388 ------~kFP~Glk~Lad~vh~--~Gmk-fGLW~epe----~v~~~S~l~~~hPdw~~~~~~~~~---------~~~r~q 445 (729)
T 4fnq_A 388 ------RKLPNGLDGLAKQVNE--LGMQ-FGLWVEPE----MVSPNSELYRKHPDWCLHVPNRPR---------SEGRNQ 445 (729)
T ss_dssp ------TTCTTHHHHHHHHHHH--TTCE-EEEEECTT----EECSSSHHHHHCGGGBCCCTTSCC---------CCBTTB
T ss_pred ------hhcCccHHHHHHHHHH--CCCE-EEEEeecc----ccCCCcHHHHhCchheeccCccCC---------ccCCcc
Confidence 3578999999999998 4775 78885431 133433211111000001111000 001112
Q ss_pred eeeCC--ChhhHH-HHHHHHHHHHcCCCEEEeccccchhhhhhcc-----CC--hHHHHHHHHHHHHHhhhhccCCCCeE
Q 002925 460 GLVHP--SQADDF-YDSMYSYLAQAGITGVKVDVIHTLEYVSEEY-----GG--RVELGKAYYKGLSNSLKKNFKGTGLI 529 (865)
Q Consensus 460 glv~p--~~~~~F-Ydd~~~~Las~GVDfVKVD~Q~~l~~l~~~~-----gg--rv~la~ay~~Al~~S~~~~F~g~~vI 529 (865)
.++++ ..++++ |+.+.+.|+++|||+||.|....+...+... .+ -.+..++|++.+ ..+.+.|++--+.
T Consensus 446 ~~LD~~~P~v~~y~~~~i~~ll~~~GidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~-d~L~~~~P~i~ie 524 (729)
T 4fnq_A 446 LVLDYSREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQRETAHRYMLGLYRVM-DEMTSRFPHILFE 524 (729)
T ss_dssp EEBCTTSHHHHHHHHHHHHHHHTTTTCCEEEEECCCCCCSCCCTTSCGGGGGGHHHHHHHHHHHHH-HHHHHHCTTCEEE
T ss_pred ccccCCChhHHHHHHHHHHHHHHHCCCCEEEEcCCCCCCcCCCCCCCcccchhHHHHHHHHHHHHH-HHHHHHCCCcEEE
Confidence 23443 345555 7888899999999999999654332221110 11 123344555444 4467778877666
Q ss_pred eecCCCcccccccccccccccccCCCCCCCCCCCCCCcccccchhhhhhhhcccccCCCcCCCCcccccccc---chhhh
Q 002925 530 SSMQQCNDFFFLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMIHCSYNSLWMGQFIQPDWDMFQSDHC---CAKFH 606 (865)
Q Consensus 530 ~CMs~~~~~~~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~~~AyNSL~~g~~v~PDWDMF~S~H~---~A~~H 606 (865)
+|-+....+-+...+.....+.|||..+. | +..|. ...+++........|++-.-.|. ...++
T Consensus 525 ~C~~Gg~r~d~~~l~~~~~~w~SD~~d~~----------~--r~~i~--~g~s~~~p~~~~g~hv~~~~~~~~gr~t~~e 590 (729)
T 4fnq_A 525 SCSGGGGRFDPGMLYYMPQTWTSDNTDAV----------S--RLKIQ--YGTSLVYPISAMGAHVSAVPNHQVGRVASLK 590 (729)
T ss_dssp EEBTBBTTCSHHHHTTSSEEECBSCCCHH----------H--HHHHH--HHHTTTSCGGGEEEEEECSSCSSSCCCCCHH
T ss_pred cccCCCCCccchhhhcccceeecCCcchH----------H--HHHHH--hchhcccCchhcccCccCCcccCCcCcchHH
Confidence 78776543222112334445666654332 1 11111 11122221111111222111222 23455
Q ss_pred hhhhhccCCCEEEecCCCC---CchhhhhcccC---------CCCcccccccCCCCCccccccCCCCCCCceEEEeecCC
Q 002925 607 AGSRAICGGPVYVSDSVGG---HDFDLLKQLVY---------PDGTIPRCQHFALPTRDCLFRNPLFDKKTILKIWNFNK 674 (865)
Q Consensus 607 AaaRAisGGPVYvSD~pG~---hdf~LLk~Lvl---------pdG~vlr~~~p~~PtrDcLF~dp~~d~~slLKIwn~n~ 674 (865)
..+.+...||+.++..+-+ ...++||+++. ..|...|...| ........-.-+-++
T Consensus 591 ~r~~~al~g~l~~~~dl~~ls~e~~~~lk~~Ia~yK~~r~li~~G~~~rl~~p------------~~~~~~~~~~v~~d~ 658 (729)
T 4fnq_A 591 ARGHVAMSGNFGYELDITKLTETEKQMIKQQVAFYKDVRRLVQFGTFYRLLSP------------FEGNEAAWMFVSADR 658 (729)
T ss_dssp HHHHHHTTSEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECT------------TSSSEEEEEEECTTS
T ss_pred HHHHHHHHhhcccccCcccCCHHHHHHHHHHHHHHHHHHHHHhCceEEecCCC------------CCCCeEEEEEECCCC
Confidence 5666667799999987764 46777776653 24666554433 212222222334455
Q ss_pred cceEEEEEecCC
Q 002925 675 YGGVIGAFNCQG 686 (865)
Q Consensus 675 ~~gViG~FN~qg 686 (865)
..+|+.+||...
T Consensus 659 ~~avv~~~~~~~ 670 (729)
T 4fnq_A 659 SEALVAYFRVLA 670 (729)
T ss_dssp SEEEEEEEEEEE
T ss_pred CEEEEEEEecCC
Confidence 678999999753
No 11
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=99.64 E-value=6.4e-15 Score=175.26 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=152.2
Q ss_pred cCCceeeccCCCCCeEEEEEecCC----cccccc-ccc-eEEEEeecCCHHHHHHHHHHH-HHhhcccccccccccCCcc
Q 002925 147 ESSFRSALHPGTDDHVMICAESGS----TRLKAS-SFD-AIAYVHVSDNPYNIMKEACSA-LRVHLNTFRLLEEKQVPSL 219 (865)
Q Consensus 147 ~g~fra~L~~~~~~~l~i~~esg~----~~v~~~-~~~-~~~~v~~g~dp~~vi~eA~k~-v~~~~~tf~~~e~k~~P~~ 219 (865)
.|+|+..+.....+...+...-.. -.++.. +|. .-+++..+++.++.|.+++.. ++.++...+. ..+..|
T Consensus 258 sG~~~~~~~~~~~~~~~v~~g~~~~~~~~~L~pGe~~~tP~~~~~~s~~g~~~~s~~~~~l~~~~~~~~~~-~~~~~p-- 334 (732)
T 2xn2_A 258 SGNHKFEVERDQFGQIHVNTGINDYNFKWKLNPNEEFQTPEVLMVYSDQGLNKMSQAFHSLIHERIMRSKF-KDQIRP-- 334 (732)
T ss_dssp SSCEEEEEEECTTSCEEEEEEECCTTCCEEECTTCEEECCCEEEEEESBCHHHHHHHHHHHHHHHTCCCTT-TTSCCC--
T ss_pred CCcEEEEEEEcCCCeEEEEEEEcCCCCceEecCCCeEEeeEEEEEEecCCHHHHHHHHHHHHHHhcCCCcc-ccCCCC--
Confidence 677888776665565555433211 111111 111 112334466667777776655 5566433221 123344
Q ss_pred cccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccCCCCCCCCCccccccccCcccccccccccccchh
Q 002925 220 VDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTARLHRLDESEK 299 (865)
Q Consensus 220 ~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~rL~~f~en~k 299 (865)
+|||||++++.++|++.|++.++.+++.|+ ++++||||||....+.. ..+-+++.+
T Consensus 335 ---~~wnsW~~~~~~~~ee~v~~~ad~~~~~G~--~~~viDDGW~~~r~~~~-----------------~~~Gd~~~d-- 390 (732)
T 2xn2_A 335 ---VLVNNWEATYFDFNEDKLKTIVDKAKKLGL--EMFVLDDGWFGHRDDDN-----------------SSLGDWKVY-- 390 (732)
T ss_dssp ---CEEECHHHHTTCCCHHHHHHHHHHHHHTTC--CEEEECSSSBTTCSSTT-----------------SCTTCCSBC--
T ss_pred ---eEEEchhhhccCCCHHHHHHHHHHHHHcCC--cEEEEcCcccccCCCCc-----------------cccCceeeC--
Confidence 899999999999999999999999999876 89999999996421100 001111111
Q ss_pred hhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCCCCCCCCCCC
Q 002925 300 FRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGEESGNSVNEG 379 (865)
Q Consensus 300 F~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~~~~~~~~~~ 379 (865)
|
T Consensus 391 ------------------~------------------------------------------------------------- 391 (732)
T 2xn2_A 391 ------------------K------------------------------------------------------------- 391 (732)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------c-------------------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCc
Q 002925 380 CGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGI 459 (865)
Q Consensus 380 ~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~ 459 (865)
+.||.||+.+++.||+ .|+| +++|+.- +.|.|+++-|+...-.....+|-... .....
T Consensus 392 ------~kFP~Glk~lv~~ih~--~Glk-~GlW~~P----~~v~~~S~l~~~hpdw~~~~~g~~~~---------~~~~~ 449 (732)
T 2xn2_A 392 ------KKFPNGLGHFADYVHE--QGLK-FGLWFEP----EMISYESNLYKEHPDYLXHVPGRKPC---------PSRNQ 449 (732)
T ss_dssp ------TTCTTCHHHHHHHHHH--TTCE-EEEEECT----TEECSSSHHHHHCGGGBCCCTTSCCC---------CBTTB
T ss_pred ------hhcCccHHHHHHHHHH--cCCE-EEEEeCc----cccCCCCHHHHhCchheecCCCCCCc---------cCCce
Confidence 2478899999999998 5887 8999965 24666653222111111112221000 01112
Q ss_pred eeeCC---ChhhHHHHHHHHHHHHcCCCEEEeccccchhhhhhcc-C--ChHHHHHHHHHH---HHHhhhhccCCCCeEe
Q 002925 460 GLVHP---SQADDFYDSMYSYLAQAGITGVKVDVIHTLEYVSEEY-G--GRVELGKAYYKG---LSNSLKKNFKGTGLIS 530 (865)
Q Consensus 460 glv~p---~~~~~FYdd~~~~Las~GVDfVKVD~Q~~l~~l~~~~-g--grv~la~ay~~A---l~~S~~~~F~g~~vI~ 530 (865)
.++|+ +-..-||+.+.+.++++|||+||+|.+..+....... . ...+...+|.++ +-+++.+.|++.-+..
T Consensus 450 ~~LD~t~Pev~~~i~~~l~~~~~~~GVD~~K~D~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~~~~l~~~~p~i~~~~ 529 (732)
T 2xn2_A 450 YVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRSLSDIYESDLPADQQGEAYHRYVLGYYDLLNKLVTRYPDILFEG 529 (732)
T ss_dssp EEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCSCCCTTSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 33444 3334458999999999999999999876543222110 0 112344555443 3357778888776667
Q ss_pred ecCC
Q 002925 531 SMQQ 534 (865)
Q Consensus 531 CMs~ 534 (865)
|++-
T Consensus 530 C~~G 533 (732)
T 2xn2_A 530 CSGG 533 (732)
T ss_dssp CBTB
T ss_pred ecCc
Confidence 8874
No 12
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=99.56 E-value=2.6e-13 Score=161.01 Aligned_cols=401 Identities=15% Similarity=0.199 Sum_probs=215.3
Q ss_pred eEEEecCC---CCeEEEEEeee-cCCceeeccCCCCCeEEEEEecCCc----ccccc-cc--ceEEEEeecCCHHHHHHH
Q 002925 128 WVLLDVPE---TTSYVMIIPII-ESSFRSALHPGTDDHVMICAESGST----RLKAS-SF--DAIAYVHVSDNPYNIMKE 196 (865)
Q Consensus 128 ~ll~e~~~---~~~y~v~lPl~-~g~fra~L~~~~~~~l~i~~esg~~----~v~~~-~~--~~~~~v~~g~dp~~vi~e 196 (865)
|+.+..++ ...-+...-|. .|+|+..+.....|.+.|...-... .++.. +| ..++.+...+..-++.++
T Consensus 232 ~~~l~~~~~~e~~G~v~g~~l~~SGn~~~~~e~~~~~~~~~~~Gi~~~~~~~~L~pGesf~tP~~~~~~s~~Gl~~~s~~ 311 (745)
T 3mi6_A 232 FMMLARPQTTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAPQATFQTPEAILSYTSAGMNQLSQQ 311 (745)
T ss_dssp CEEEECTTCCSSSBCEEEEEESCCSSEEEEEEECTTSCEEEEEEECSTTCCEEECTTCEEECCCEEEEEESBCHHHHHHH
T ss_pred EEEEecCCCCcccceEEEEEEEeccceEEEEEECCCCcEEEEEecCCCCCceEeCCCCEEEccEEEEEEecCCHHHHHHH
Confidence 56665442 12223334444 7899998877767766665542211 11111 12 223222223333344444
Q ss_pred HHHHHHhhcccccccccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccCCCCCCCCCcc
Q 002925 197 ACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSINRDDENPNED 276 (865)
Q Consensus 197 A~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~~~d~~~~~~~ 276 (865)
.-+.++.++...+ -..++.| +|||||++++.++|++.|++.++.+++.|+ .+++||||||...++..
T Consensus 312 ~h~~~r~~~~~~~-~~~~~~P-----~~wNsW~~~~~d~tee~il~~ad~~~~~G~--e~fviDDGW~~~r~~d~----- 378 (745)
T 3mi6_A 312 MASFYQQHLVNPR-FAHEERP-----VLINNWEATYFDFNEAKLMTIVNQAKRLGI--EMFVLDDGWFGHRDDDT----- 378 (745)
T ss_dssp HHHHHHHHTSCTT-TTTSCCC-----CEEECHHHHTTCCCHHHHHHHHHHHHHHTC--CEEEECTTCBTTCSSTT-----
T ss_pred HHHHHHHhccCcc-ccCCCCc-----eEEEchHhhCcCCCHHHHHHHHHHHHHcCC--cEEEECcccccCCCCCc-----
Confidence 4445677643211 1245566 899999999999999999999999999887 58999999997532210
Q ss_pred ccccccCcccccccccccccchhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhh
Q 002925 277 SKNLVLGGEQMTARLHRLDESEKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKI 356 (865)
Q Consensus 277 ~~~~~~~~~q~~~rL~~f~en~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~ 356 (865)
..+-+++.+.
T Consensus 379 ------------~~~Gdw~~d~---------------------------------------------------------- 388 (745)
T 3mi6_A 379 ------------TSLGDWFVDQ---------------------------------------------------------- 388 (745)
T ss_dssp ------------SCTTCCSBCT----------------------------------------------------------
T ss_pred ------------ccCCCceeCh----------------------------------------------------------
Confidence 0111121110
Q ss_pred hhhhHhHhhhhcCCCCCCCCCCCCCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecc
Q 002925 357 NNLKKELEEMFGGEESGNSVNEGCGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPC 436 (865)
Q Consensus 357 ~~~~~~~~~~f~g~~~~~~~~~~~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~ 436 (865)
+.||.||+.+++.|++ .|+| +++|..-. .|.|+++-|+..--..
T Consensus 389 -----------------------------~kFP~Gl~~lv~~ih~--~Glk-~glW~~Pe----~v~~dS~l~~~hPdw~ 432 (745)
T 3mi6_A 389 -----------------------------RKFPDGIEHFSQAVHQ--QGMK-FGLWFEPE----MVSVDSDLYQQHPDWL 432 (745)
T ss_dssp -----------------------------TTCTTHHHHHHHHHHH--TTCE-EEEEECTT----EECSSSSHHHHCGGGB
T ss_pred -----------------------------hhcCccHHHHHHHHHH--CCCE-EEEEEccc----ccCCCCHHHHhCcceE
Confidence 2478899999999998 4786 99999873 3677664333221111
Q ss_pred cCCCCCCCcccccceeeeecCCceeeCC--ChhhHHHHHHHH-HHHHcCCCEEEeccccchhhhhhc-c-CCh-----HH
Q 002925 437 NLSPGLDGTMDDLAVVKIVEGGIGLVHP--SQADDFYDSMYS-YLAQAGITGVKVDVIHTLEYVSEE-Y-GGR-----VE 506 (865)
Q Consensus 437 ~~spgl~~~~~d~a~~~~~~~g~glv~p--~~~~~FYdd~~~-~Las~GVDfVKVD~Q~~l~~l~~~-~-ggr-----v~ 506 (865)
...++- .+ ....+..++|+ .++++||.+... .++++|||++|.|.--.+..+... . +.+ .+
T Consensus 433 l~~~~g---~~------~~~r~~~vLD~tnPevr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~q~~~~~~ 503 (745)
T 3mi6_A 433 IHAPKS---TP------TPGRHQFVLDMARPEVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHR 503 (745)
T ss_dssp CCCTTC---CC------CCSSSCEEBCTTCHHHHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGGGGGHHHH
T ss_pred EEcCCC---ce------eecCCeEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCccccccHHHHH
Confidence 111210 00 01123456777 578899888885 678999999999964333212111 1 001 23
Q ss_pred HHHHHHHHHHHhhhhccCCCCeEeecCCCcccccccccccccccccCCCCCCCCCCCCCCcccccchhhh---hhhhccc
Q 002925 507 LGKAYYKGLSNSLKKNFKGTGLISSMQQCNDFFFLGTRQISMGRVGDDFWFQDPNGDPNGVYWLQGVHMI---HCSYNSL 583 (865)
Q Consensus 507 la~ay~~Al~~S~~~~F~g~~vI~CMs~~~~~~~~~~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~Hi~---~~AyNSL 583 (865)
..+++++.|+ .+.+.||+.-+-+|-+-...+ .-.|.+-.+=+|..|.. || ..++.|- +..|=.-
T Consensus 504 y~~g~y~ll~-~l~~~~P~v~ie~CssGGgR~------D~g~L~~~~~~W~SD~t-Da-----~eRl~IQ~GtS~~yP~~ 570 (745)
T 3mi6_A 504 YILGVYQLYA-RLTQAYPNVLFESCASGGGRF------DLGMMYYAPQAWTSDDT-DA-----AERLLIQFGTSYGYPQA 570 (745)
T ss_dssp HHHHHHHHHH-HHHHHCTTCEEEECSTTTSSC------SHHHHHHSSEEECCSCC-CH-----HHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHH-HHHhhCCCeEEEecCCCCCcc------ChhHHhcCCccccCCCC-CH-----HHHHHHHcccchhhCHH
Confidence 3344444444 456778988677898865321 11123444455555542 22 2233331 1234433
Q ss_pred ccCCC--cCCCCccccccccchhhhhhhhhccCCCEEEecC--CCCCchhhhhcccC---------CCCcccccccCCCC
Q 002925 584 WMGQF--IQPDWDMFQSDHCCAKFHAGSRAICGGPVYVSDS--VGGHDFDLLKQLVY---------PDGTIPRCQHFALP 650 (865)
Q Consensus 584 ~~g~~--v~PDWDMF~S~H~~A~~HAaaRAisGGPVYvSD~--pG~hdf~LLk~Lvl---------pdG~vlr~~~p~~P 650 (865)
-||.. ..|..-+-.+..-.-.++. |++|---|=-|- -...+.+.+|+.+. ..|...|-..|-
T Consensus 571 ~mgaHvs~~Pnh~t~R~~~l~~R~~v---Am~G~~G~eldl~~ls~~e~~~~~~~i~~YK~~R~~i~~G~~yrL~~p~-- 645 (745)
T 3mi6_A 571 MMGAHVSAVPNDQMGRITSLKTRGAV---AFFGDLGYELDITKMAPTELDQVKKQVAFYKCYRQLFQFGKFYRIDSPF-- 645 (745)
T ss_dssp GEEEEEECSSCTTTCCCCCHHHHHHH---HTSSEEEEESCSTTCCHHHHHHHHHHHHHHHHTHHHHHHSEEEECSCTT--
T ss_pred HHhccccCCccccCCCcCCHHHHHHH---HhccCceeeeChhhCCHHHHHHHHHHHHHHHHHhHHhccccEEeeCCcc--
Confidence 34433 3455422221111112222 566544444442 34567777776663 256665554431
Q ss_pred CccccccCCCCCCCceEEEeec---CCcceEEEEEecC
Q 002925 651 TRDCLFRNPLFDKKTILKIWNF---NKYGGVIGAFNCQ 685 (865)
Q Consensus 651 trDcLF~dp~~d~~slLKIwn~---n~~~gViG~FN~q 685 (865)
. +..-...|-+ .+...|+.+|.+.
T Consensus 646 ----------~-~~~~~~a~~~vs~d~~~avv~~~~~~ 672 (745)
T 3mi6_A 646 ----------V-EDGNVTSWQVVSDDQKQAIAARYQLL 672 (745)
T ss_dssp ----------S-TTCCEEEEEEECTTSSEEEEEEEESS
T ss_pred ----------c-CCCCcEEEEEEcCCCCEEEEEEEEec
Confidence 0 0111345554 3345788888764
No 13
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=99.53 E-value=3e-13 Score=160.67 Aligned_cols=264 Identities=16% Similarity=0.172 Sum_probs=148.0
Q ss_pred eEEEEEeeecCCceeeccCCCCCeEEEEEecCC----cccccc-ccc-eEEEEeec-CCHHHHHHHHHHHHHhhcccccc
Q 002925 138 SYVMIIPIIESSFRSALHPGTDDHVMICAESGS----TRLKAS-SFD-AIAYVHVS-DNPYNIMKEACSALRVHLNTFRL 210 (865)
Q Consensus 138 ~y~v~lPl~~g~fra~L~~~~~~~l~i~~esg~----~~v~~~-~~~-~~~~v~~g-~dp~~vi~eA~k~v~~~~~tf~~ 210 (865)
.|.+.| .-.|+|+..+.....+...+...-.. -.++.. +|. .-+++..+ ++.-++.+..-+.++.++.. +.
T Consensus 246 ~~g~~l-~~sG~~~~~~~~~~~~~~~v~~g~~~~~~~~~L~pGe~~~tp~~~~~~~~~gl~~~~~~~~~~~r~~~~~-~~ 323 (720)
T 2yfo_A 246 CYGMLF-VYSGNFSCEAEKDQFNQTRLLLGLNEELFSYPLASGETFTVPEVILSYSAEGLSALSQQYHNCIRNHVCR-SK 323 (720)
T ss_dssp EEEEEE-CCSSCEEEEEEECTTSCEEEEEESCSTTCCEEECTTCEEEEEEEEEEEESBCHHHHHHHHHHHHHHHTCC-CG
T ss_pred EEEEEE-ecCCcEEEEEEEcCCCeEEEEEeecCcCcceEeCCCCeEEeeEEEEEEecCCHHHHHHHHHHHHHhhccc-cc
Confidence 354433 23678888777666665555544211 111111 221 12233334 44444443344456665321 01
Q ss_pred cccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccCCCCCCCCCccccccccCccccccc
Q 002925 211 LEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSINRDDENPNEDSKNLVLGGEQMTAR 290 (865)
Q Consensus 211 ~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~~~d~~~~~~~~~~~~~~~~q~~~r 290 (865)
-..+..| +|||||++++.++||+.|++.++.+++.|+ ++++|||||+...++.. ..
T Consensus 324 ~~~~~~p-----~~~nsW~~~~~~~~e~~i~~~ad~~~~~G~--~~~viDDgW~~~r~~~~-----------------~~ 379 (720)
T 2yfo_A 324 YVHMQRP-----VLINSWEAAYFDFTGDTIVDLAKEAASLGI--DMVVMDDGWFGKRNDDN-----------------SS 379 (720)
T ss_dssp GGGSCCC-----CEEEHHHHHTTCCCHHHHHHHHHHHHHHTC--CEEEECSSSBTTCSSTT-----------------SC
T ss_pred ccCCCCC-----eEEEchHHhCcCCCHHHHHHHHHHHHHcCC--cEEEECcccccCCCccc-----------------cc
Confidence 1123445 899999999999999999999999999886 89999999996432210 01
Q ss_pred ccccccchhhhcccCCCCCCCCCCCCCCcchhhhhhHHHHHHHhhhhhhhhhhcCccccchhhhhhhhhhHhHhhhhcCC
Q 002925 291 LHRLDESEKFRKYKGGSLLAPNAPSFDIKRPKMLINKAIELEHANKARDKAIRSGVTDLFEFDSKINNLKKELEEMFGGE 370 (865)
Q Consensus 291 L~~f~en~kF~~~~~g~~~~~~~~~~d~~~~~~l~~~~~e~~~~~~~r~~a~~sg~~~~s~f~~~~~~~~~~~~~~f~g~ 370 (865)
+-++..+.
T Consensus 380 ~Gdw~~d~------------------------------------------------------------------------ 387 (720)
T 2yfo_A 380 LGDWQVNE------------------------------------------------------------------------ 387 (720)
T ss_dssp TTCCSBCH------------------------------------------------------------------------
T ss_pred CCCCeeCh------------------------------------------------------------------------
Confidence 11222221
Q ss_pred CCCCCCCCCCCcccCCCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccc
Q 002925 371 ESGNSVNEGCGRCSCKADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLA 450 (865)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a 450 (865)
+.||.||+.++++|++ .|+| +++|..-. .|.|+++-|+..--.....++- .+.
T Consensus 388 ---------------~kFP~Glk~lvd~ih~--~Glk-~GlW~~P~----~v~~~S~l~~~hpdw~~~~~~~---~~~-- 440 (720)
T 2yfo_A 388 ---------------TKLGGSLAELITRVHE--QGMK-FGIWIEPE----MINEDSDLYRAHPDWAIRIQGK---KPV-- 440 (720)
T ss_dssp ---------------HHHTSCHHHHHHHHHH--TTCE-EEEEECTT----EECSSSHHHHHCGGGBCCCTTS---CCC--
T ss_pred ---------------hhcCccHHHHHHHHHH--CCCE-EEEEeccc----ccCCCCHHHHhCcceEEECCCc---Ccc--
Confidence 1357799999999998 5887 99997763 3556553222111011111210 000
Q ss_pred eeeeecCCceeeCC--ChhhHHHHHHH-HHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHH---HHHhhhhccC
Q 002925 451 VVKIVEGGIGLVHP--SQADDFYDSMY-SYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKG---LSNSLKKNFK 524 (865)
Q Consensus 451 ~~~~~~~g~glv~p--~~~~~FYdd~~-~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~A---l~~S~~~~F~ 524 (865)
......++|+ .++++|+.+.. +.++++|||++|.|....+... ...+. ...|..+ |-+.+.+.++
T Consensus 441 ----~~~~~~~LD~t~Pea~~~~~~~l~~l~~~~GIDy~K~D~n~~~~~~--~~~~~---~~~y~~~~y~l~~~l~~~~p 511 (720)
T 2yfo_A 441 ----RSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSMADV--YAGNL---SYDYVLGVYDFMERLCSRYP 511 (720)
T ss_dssp ----CBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECCCSCCCSC--CSTTH---HHHHHHHHHHHHHHHHHHST
T ss_pred ----cCCceEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcccc--CCccH---HHHHHHHHHHHHHHHHHhCC
Confidence 0112345665 35677776666 6688999999999975433211 11222 3333322 3455666788
Q ss_pred CCCeEeecCCC
Q 002925 525 GTGLISSMQQC 535 (865)
Q Consensus 525 g~~vI~CMs~~ 535 (865)
+.-+.+|.+..
T Consensus 512 ~v~~e~C~~GG 522 (720)
T 2yfo_A 512 DLLLEGCSGGG 522 (720)
T ss_dssp TCEEEECBTBB
T ss_pred CcEEEeccCCC
Confidence 76566798743
No 14
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=98.15 E-value=3.2e-05 Score=91.94 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=72.9
Q ss_pred CCeEEEEEeeecCCceeec--cCCCCCeEEEEEecCCccccccccceEEEEeecCCHHHHHHHHHHHHHhhccccccccc
Q 002925 136 TTSYVMIIPIIESSFRSAL--HPGTDDHVMICAESGSTRLKASSFDAIAYVHVSDNPYNIMKEACSALRVHLNTFRLLEE 213 (865)
Q Consensus 136 ~~~y~v~lPl~~g~fra~L--~~~~~~~l~i~~esg~~~v~~~~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~ 213 (865)
+..|-|++ ++...+.+ .....+.+.+.++.|. --.|+-.|.+|.+++++..++..+.
T Consensus 111 ~~~~Gvf~---~n~~~~~~d~~~~~~~~~~~~~~~g~---------lD~y~~~G~~~~~v~~~Y~~ltG~p--------- 169 (693)
T 2g3m_A 111 GVATGYFF---NSASKVIFDVGLEEYDKVIVTIPEDS---------VEFYVIEGPRIEDVLEKYTELTGKP--------- 169 (693)
T ss_dssp TEEEEEEE---CCCSCEEEEESSSSTTEEEEEESSSC---------EEEEEEECSSHHHHHHHHHHHHCCC---------
T ss_pred CCEEEEEE---eCCCceEEEEecccCceEEEEECCCC---------EEEEEEeCCCHHHHHHHHHHHhCCC---------
Confidence 35666644 33333332 2234455666555332 2246668999999998887665331
Q ss_pred ccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCcc
Q 002925 214 KQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQS 265 (865)
Q Consensus 214 k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs 265 (865)
.-.|.|.-++-+|+|..+ |++.|++.++.+++.|||+..+.||++|+.
T Consensus 170 ~~pP~WalG~~qsr~~y~----~~~ev~~v~~~~~~~~IP~dvi~lD~~y~~ 217 (693)
T 2g3m_A 170 FLPPMWAFGYMISRYSYY----PQDKVVELVDIMQKEGFRVAGVFLDIHYMD 217 (693)
T ss_dssp CCCCGGGGSEEEEETTCC----SHHHHHHHHHHHHHTTCCEEEEEECGGGSB
T ss_pred CCCcccccCccccCCcCC----CHHHHHHHHHHHHHcCCCcceEEEecceec
Confidence 235677777777999532 799999999999999999999999999974
No 15
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*
Probab=98.14 E-value=2.6e-05 Score=93.78 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=57.0
Q ss_pred EEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEec
Q 002925 182 AYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDD 261 (865)
Q Consensus 182 ~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDD 261 (865)
.|+-.|.+|.+++++..++..+. .-.|.|.-++ |++| .|+.+.+++.|++.++.+.+.|||+..+.||+
T Consensus 239 yy~~~G~~p~~v~~~Y~~LtG~p---------~lpP~walG~-w~s~-~y~~~y~e~~v~~v~~~~r~~~IP~dvi~lD~ 307 (773)
T 2f2h_A 239 YFVIDGPTPKAVLDRYTRFTGRP---------ALPPAWSFGL-WLTT-SFTTNYDEATVNSFIDGMAERNLPLHVFHFDC 307 (773)
T ss_dssp EEEEECSSHHHHHHHHHHHHCCC---------CCCCGGGGSE-EEEC-CSSSCCCHHHHHHHHHHHHHTTCCCCEEEECG
T ss_pred EEEEeCCCHHHHHHHHHHHhccc---------ccCCccccCc-EEec-cccCCCCHHHHHHHHHHHHHcCCCeeEEEECc
Confidence 46778999999999877654331 1245554333 6666 36667899999999999999999999999999
Q ss_pred CCcc
Q 002925 262 GWQS 265 (865)
Q Consensus 262 GWQs 265 (865)
+|+.
T Consensus 308 ~w~~ 311 (773)
T 2f2h_A 308 FWMK 311 (773)
T ss_dssp GGBC
T ss_pred cccc
Confidence 9985
No 16
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=97.95 E-value=0.00011 Score=88.72 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCCeEEEEEecCCccccccccceEEEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccccccccccCCH
Q 002925 158 TDDHVMICAESGSTRLKASSFDAIAYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEP 237 (865)
Q Consensus 158 ~~~~l~i~~esg~~~v~~~~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte 237 (865)
..+.+.+.+++|.. -.|+-.|.+|.+++++..++.-+. .-+|.|.-++-+|.|.-. ++
T Consensus 219 ~~~~~~~~~~gg~l---------d~y~~~G~~p~~v~~~Y~~ltG~~---------~lpP~WalG~~~sr~~Y~----s~ 276 (817)
T 4ba0_A 219 ESDILQLEAKSGRS---------AYILVAGNSYPSLIENFTQVTGRQ---------PLPPRWALGSFASRFGYR----SE 276 (817)
T ss_dssp STTEEEEEESSSCC---------EEEEEECSSHHHHHHHHHHHHCCC---------CCCCGGGGSBEECCBCCC----SH
T ss_pred CCCEEEEEEcCCcE---------EEEEecCCCHHHHHHHHHHhcCCC---------CCCCccccCcceecccCC----CH
Confidence 34556665555432 356778999999999988775442 225788888888998632 79
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEecCCccC
Q 002925 238 AGVWQGVKDFVDGGISPRFLIIDDGWQSI 266 (865)
Q Consensus 238 ~~I~~~l~~L~~~G~~~~~vIIDDGWQs~ 266 (865)
+.|++.++.+.+.|||+..+.||++|+..
T Consensus 277 ~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~ 305 (817)
T 4ba0_A 277 AETRATVQKYKTEDFPLDTIVLDLYWFGK 305 (817)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEECGGGSCS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcccccCC
Confidence 99999999999999999999999999753
No 17
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=97.92 E-value=0.00023 Score=84.27 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=101.5
Q ss_pred ccccccCCCCCCcccccCcccCCeEEeeeecccceeccccCCCCC------CCCccceeEEEecCCCCeEEEEEeeecCC
Q 002925 76 FLGFKAQEPSDRLMNSLGRFSGRDFVSIFRFKTWWSTQWVGNSGS------DLQMETQWVLLDVPETTSYVMIIPIIESS 149 (865)
Q Consensus 76 flg~~~~~p~~~~~~~lG~~~~~rfl~~fR~K~WW~t~~~g~~g~------dip~eTQ~ll~e~~~~~~y~v~lPl~~g~ 149 (865)
.+.++..-+.+.+++-||.-.+.--+.-.++.+|= +--.+.... -+| |++.. ++..|-||+ ++.
T Consensus 40 ~~~~~~~l~~~e~~YGlGE~~~~l~~~g~~~~l~n-~D~~~~~~~~~~lY~~~P----f~~~~--~~~~~Gvf~---~n~ 109 (666)
T 3nsx_A 40 GFAFTYIMDEDDIVYGLGESNRGINKRGYCYISNC-TDDPIHTEDKRSLYGAHN----FIIVS--GKTTFGLFF---DYP 109 (666)
T ss_dssp SEEEEEECCTTCEEEECSSCSSCSSCTTEEEEECC-CCCSSCCTTCCCCSEECC----EEEEE--SSSCEEEEE---ECC
T ss_pred ceEEEeecCccceEeecccccccccccccEEeecc-CCCCCccccchhhhhcce----EEEEE--cCcceeEEE---ecC
Confidence 66777778889999999864331001112233332 211121111 244 44433 235677764 444
Q ss_pred ceeecc--CCCCCeEEEEEecCCccccccccceEEEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccc
Q 002925 150 FRSALH--PGTDDHVMICAESGSTRLKASSFDAIAYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCT 227 (865)
Q Consensus 150 fra~L~--~~~~~~l~i~~esg~~~v~~~~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCT 227 (865)
.++.+. ....+.+.+.++.|.- -.|+-.|.+|.+++++..++.-+. .-.|.|.=++-+|.
T Consensus 110 ~~~~~d~~~~~~~~~~~~~~~g~l---------D~y~~~G~~p~~v~~~Y~~ltG~~---------~lpP~walG~~qsr 171 (666)
T 3nsx_A 110 SKLTFDIGYTRMDTLKVSCENADL---------DIYVIEGENAYDIVKQFRRVIGRS---------YIPPKFAFGFGQSR 171 (666)
T ss_dssp SCEEEEESSSSTTEEEEEESSCCE---------EEEEEECSSHHHHHHHHHHHHCCC---------CCCCGGGGSEEEEE
T ss_pred CcEEEEecccccceEEEEEecCce---------EEEEEcCCCHHHHHHHHHHhhCcc---------cCCccccccccccc
Confidence 444432 2344567777665533 346667999999999988765442 22577887888899
Q ss_pred cccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCcc
Q 002925 228 WDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQS 265 (865)
Q Consensus 228 W~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs 265 (865)
|.-. |++.|++.++.+.+.|||+..+.||++|++
T Consensus 172 ~~Y~----~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~ 205 (666)
T 3nsx_A 172 WGYT----TKEDFRAVAKGYRENHIPIDMIYMDIDYMQ 205 (666)
T ss_dssp TTCC----SHHHHHHHHHHHHHTTCCCCEEEECGGGSS
T ss_pred cccC----CHHHHHHHHHHHHhcCCCcceEEEecHHHH
Confidence 9722 789999999999999999999999999985
No 18
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=97.57 E-value=0.0015 Score=79.71 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=60.1
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEe
Q 002925 181 IAYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIID 260 (865)
Q Consensus 181 ~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIID 260 (865)
-.|+-.|.+|.+++++..++..+. .-.|.|.=++-+|+|.-. +++.|++.++.+.+.|||+..+.+|
T Consensus 289 D~y~~~Gptp~~Vi~~Y~~LtG~p---------~lpP~WalG~~qsr~~Y~----s~~ev~~vv~~~r~~~IP~Dvi~lD 355 (898)
T 3lpp_A 289 DFYILLGDTPEQVVQQYQQLVGLP---------AMPAYWNLGFQLSRWNYK----SLDVVKEVVRRNREAGIPFDTQVTD 355 (898)
T ss_dssp EEEEEEESSHHHHHHHHHHHHCCC---------CCCCGGGGSCEECCSCCC----SHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCC---------CcCcchhcCcceecccCC----CHHHHHHHHHHHHHcCCCceeeEec
Confidence 356668999999999988776552 125788888999999632 7899999999999999999999999
Q ss_pred cCCcc
Q 002925 261 DGWQS 265 (865)
Q Consensus 261 DGWQs 265 (865)
++|+.
T Consensus 356 idy~~ 360 (898)
T 3lpp_A 356 IDYME 360 (898)
T ss_dssp GGGSS
T ss_pred ccccc
Confidence 99985
No 19
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=97.52 E-value=0.004 Score=75.87 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=59.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEec
Q 002925 182 AYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDD 261 (865)
Q Consensus 182 ~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDD 261 (865)
.|+-.|.+|.+++++..++..+. .-.|.|.=++-+|.|.-. +++.|++.++.+.+.|||+..+.+|+
T Consensus 262 ~y~~~Gptp~~Vv~~Y~~ltG~p---------~lpP~WalG~~qsr~~Y~----s~~ev~~vv~~~r~~~IP~Dvi~lDi 328 (875)
T 3l4y_A 262 FYVFLGNTPEQVVQEYLELIGRP---------ALPSYWALGFHLSRYEYG----TLDNMREVVERNRAAQLPYDVQHADI 328 (875)
T ss_dssp EEEEEESSHHHHHHHHHHHHCCC---------CCCCGGGGSEEECCSCCC----SHHHHHHHHHHHHHTTCCCCEEEECG
T ss_pred EEEEeCCCHHHHHHHHHHHhCCC---------CCCCccccccceeccCCC----CHHHHHHHHHHHHhcCCCCceEEEcc
Confidence 46667999999999998875542 225778888889999632 68999999999999999999999999
Q ss_pred CCcc
Q 002925 262 GWQS 265 (865)
Q Consensus 262 GWQs 265 (865)
+|+.
T Consensus 329 dy~~ 332 (875)
T 3l4y_A 329 DYMD 332 (875)
T ss_dssp GGSB
T ss_pred chhc
Confidence 9985
No 20
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Probab=97.30 E-value=0.0026 Score=78.55 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=58.1
Q ss_pred EEEeecCCHHHHHHHHHHHHHhhcccccccccccCCcccccccccccccccccCCHHHHHHHHHHHHhCCCCCcEEEEec
Q 002925 182 AYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDD 261 (865)
Q Consensus 182 ~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDD 261 (865)
.|+-.|.+|.+++++..++..+. .-+|.|.-++-+|+|..+ |++.|++.++.+.+.|||+..+.||+
T Consensus 405 yy~~~G~tp~~Vv~~Yt~LTGrp---------~mpP~WalG~wqsr~~Y~----sq~ev~~va~~~re~gIPlDvi~lD~ 471 (1020)
T 2xvl_A 405 YYFVAGDTKDDIISGYRQLTGKS---------VMLPKWAYGFWQSRERYK----SSDEIIQNLKEYRDRKIPIDNIVLDW 471 (1020)
T ss_dssp EEEEECSSHHHHHHHHHHHHCCC---------CCCCGGGGSEEECCTTCC----SHHHHHHHHHHHHHTTCCCCEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHhCCC---------CCCCcceeceeeecCCCC----CHHHHHHHHHHHHHcCCCcceEEEec
Confidence 46778999999998887665442 226778888889999833 79999999999999999999999999
Q ss_pred CCcc
Q 002925 262 GWQS 265 (865)
Q Consensus 262 GWQs 265 (865)
+|..
T Consensus 472 ~y~~ 475 (1020)
T 2xvl_A 472 SYWP 475 (1020)
T ss_dssp CCSC
T ss_pred cccc
Confidence 8754
No 21
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.65 E-value=0.01 Score=69.95 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=52.5
Q ss_pred chHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCceeeCCChhhHH
Q 002925 391 GMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGIGLVHPSQADDF 470 (865)
Q Consensus 391 GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~glv~p~~~~~F 470 (865)
+|+++++-.|+ +||+ |.+||.-.||+. +
T Consensus 348 di~~l~~Ya~~--kgV~-i~lw~~~~~~~~---------------------------------------------~---- 375 (641)
T 3a24_A 348 DLKELVDYAAS--KNVG-IILWAGYHAFER---------------------------------------------D---- 375 (641)
T ss_dssp CHHHHHHHHHH--TTCE-EEEEEEHHHHHT---------------------------------------------S----
T ss_pred CHHHHHHHHHh--cCCE-EEEEeeCcchHH---------------------------------------------H----
Confidence 89999999999 4786 788998777420 0
Q ss_pred HHHHHHHHHHcCCCEEEeccccchhhhhhccCChHHHHHHHHHHHHHhhhh
Q 002925 471 YDSMYSYLAQAGITGVKVDVIHTLEYVSEEYGGRVELGKAYYKGLSNSLKK 521 (865)
Q Consensus 471 Ydd~~~~Las~GVDfVKVD~Q~~l~~l~~~~ggrv~la~ay~~Al~~S~~~ 521 (865)
-+..++.++++||++||+|-. . ++..+..+-|++.++++...
T Consensus 376 ~~~~~~~~~~~Gv~gvK~Df~------~---~~~Q~~v~~y~~i~~~aA~~ 417 (641)
T 3a24_A 376 MENVCRHYAEMGVKGFKVDFM------D---RDDQEMTAFNYRAAEMCAKY 417 (641)
T ss_dssp HHHHHHHHHHHTCCEEEEECC------C---CCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECCC------C---CCcHHHHHHHHHHHHHHHHc
Confidence 156788999999999999943 1 33467788888888877543
No 22
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*
Probab=96.41 E-value=0.09 Score=64.35 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=95.2
Q ss_pred ccccccCCCCCCcccccCcccCCeEEeeeecccceeccccCCCCCCCCccc--------ee-EEEecCCCCeEEEEEeee
Q 002925 76 FLGFKAQEPSDRLMNSLGRFSGRDFVSIFRFKTWWSTQWVGNSGSDLQMET--------QW-VLLDVPETTSYVMIIPII 146 (865)
Q Consensus 76 flg~~~~~p~~~~~~~lG~~~~~rfl~~fR~K~WW~t~~~g~~g~dip~eT--------Q~-ll~e~~~~~~y~v~lPl~ 146 (865)
||=++..-|+ .+++-||.-.+. .||...=|.+-.+= .+|.|.+. -| |-++ +++..|-||+==+
T Consensus 168 ~l~~st~lp~-~~~YGlGE~~~~----~~r~~~~~~~~~~~--~~D~~~~~~~nlYgs~Pfyl~~~-~~~~~~Gvf~~Ns 239 (908)
T 3top_A 168 FIRISTRLPS-KYLYGFGETEHR----SYRRDLEWHTWGMF--SRDQPPGYKKNSYGVHPYYMGLE-EDGSAHGVLLLNS 239 (908)
T ss_dssp EEEEEEECSS-SCEECCSSSCCS----SSBCCCSSEEEEES--CCCCCSCTTCCCSCCCCEEEEEC-SSSCEEEEEECCC
T ss_pred EEEEEEEcCc-cceecccCcCCc----ccccccCCceeeee--ecCCCCCCCCCccceeeeEEEEc-CCCeEEEEEEEcC
Confidence 5555555565 578888865442 13333323221111 23443221 12 2223 2345566654222
Q ss_pred cCCceeeccCCCCCeEEEEEecCCccccccccceEEEEeecCCHHHHHHHHHHHHHhhcccccccccccCCccccccccc
Q 002925 147 ESSFRSALHPGTDDHVMICAESGSTRLKASSFDAIAYVHVSDNPYNIMKEACSALRVHLNTFRLLEEKQVPSLVDKFGWC 226 (865)
Q Consensus 147 ~g~fra~L~~~~~~~l~i~~esg~~~v~~~~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf~~~e~k~~P~~~d~lGWC 226 (865)
. .+--.+++ ...+...++.|.- -.|+-.|.+|.+++++..++.-+. .-.|.|.=++-.|
T Consensus 240 ~-~~dv~~~~--~~~~~~~~~gG~l---------D~y~~~Gptp~~Vi~qYt~LtG~p---------~mpP~WalGy~qs 298 (908)
T 3top_A 240 N-AMDVTFQP--LPALTYRTTGGVL---------DFYVFLGPTPELVTQQYTELIGRP---------VMVPYWSLGFQLC 298 (908)
T ss_dssp S-SEEEEEET--TTEEEEEESSSCE---------EEEEECCSSHHHHHHHHHHHHCCC---------CCCCGGGGSCEEC
T ss_pred C-CCeEEecC--CCeEEEEEcCCcE---------EEEEecCCCHHHHHHHHHHHhCCC---------CCCChhhhhcccc
Confidence 1 12222222 2345555555433 356678999999999998775542 2257899999999
Q ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCcEEEEecCCcc
Q 002925 227 TWDAFYLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQS 265 (865)
Q Consensus 227 TW~af~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs 265 (865)
.|. |. +++.|++.++.+.+.+||+..+.+|-.|+.
T Consensus 299 R~~--Y~--~~~ev~~vv~~~r~~~IPlDvi~~Didym~ 333 (908)
T 3top_A 299 RYG--YQ--NDSEIASLYDEMVAAQIPYDVQYSDIDYME 333 (908)
T ss_dssp CTT--CC--SHHHHHHHHHHHHHHTCCCCEEEECGGGSS
T ss_pred ccc--CC--CHHHHHHHHHHHHHcCCCeeeEEeeccccc
Confidence 997 32 589999999999999999999999988865
No 23
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=92.70 E-value=0.81 Score=54.78 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=54.1
Q ss_pred chHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcceeecccCCCCCCCcccccceeeeecCCceeeCCChhhHH
Q 002925 391 GMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSKIIPCNLSPGLDGTMDDLAVVKIVEGGIGLVHPSQADDF 470 (865)
Q Consensus 391 GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k~~~~~~spgl~~~~~d~a~~~~~~~g~glv~p~~~~~F 470 (865)
-|+.+++-.|+ +||+ |-+||--.|-|.. | .+=
T Consensus 419 Dl~eL~~YA~s--KGV~-iilw~~t~~~~~n-------~--------------------------------------e~~ 450 (738)
T 2d73_A 419 DVKEIHRYAAR--KGIK-MMMHHETSASVRN-------Y--------------------------------------ERH 450 (738)
T ss_dssp CHHHHHHHHHH--TTCE-EEEEEECTTBHHH-------H--------------------------------------HHH
T ss_pred CHHHHHHHHHh--CCCE-EEEEEcCCCchhh-------H--------------------------------------HHH
Confidence 58889999998 4785 7789976552211 1 011
Q ss_pred HHHHHHHHHHcCCCEEEeccccc-hhhhhhccCChHHHHHHHHHHHHHhhhh
Q 002925 471 YDSMYSYLAQAGITGVKVDVIHT-LEYVSEEYGGRVELGKAYYKGLSNSLKK 521 (865)
Q Consensus 471 Ydd~~~~Las~GVDfVKVD~Q~~-l~~l~~~~ggrv~la~ay~~Al~~S~~~ 521 (865)
-|+.+++++++||.+||||=-+. ++ ..++.......+-|+++++.++..
T Consensus 451 ~d~~f~~~~~~Gv~GVKvdF~g~~~~--r~~~h~~Q~~v~~Y~~i~~~AA~~ 500 (738)
T 2d73_A 451 MDKAYQFMADNGYNSVKSGYVGNIIP--RGEHHYGQWMNNHYLYAVKKAADY 500 (738)
T ss_dssp HHHHHHHHHHTTCCEEEEECCSSCBS--TTCCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcC--CcccccchHHHHHHHHHHHHHHHc
Confidence 25678899999999999994321 11 112222477889999999998644
No 24
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A*
Probab=91.87 E-value=1.6 Score=54.28 Aligned_cols=121 Identities=14% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCeEEEEEeeecCCceeeccCCC-------CCeEEEEEecCCccccccccceEEEEeecCCHHHHHHHHHHHHHhhcccc
Q 002925 136 TTSYVMIIPIIESSFRSALHPGT-------DDHVMICAESGSTRLKASSFDAIAYVHVSDNPYNIMKEACSALRVHLNTF 208 (865)
Q Consensus 136 ~~~y~v~lPl~~g~fra~L~~~~-------~~~l~i~~esg~~~v~~~~~~~~~~v~~g~dp~~vi~eA~k~v~~~~~tf 208 (865)
...|-+|+ ++..++.+.-+. .+...+.++.|.- +--+++..|.+|.++|++..++.-+-....
T Consensus 272 ~~~yGvf~---dn~~~~~fD~g~~~~~~~~~~~~~~~~~~g~l-------D~y~~~g~G~tp~~Vv~~Yt~LTGkp~~~~ 341 (1027)
T 2x2h_A 272 QYSYGWFM---DNVSQSYMNTGDTTWNSGQEDLAYMGAQYGPF-------DQHFVYGAGGGMECVVTAFSLLQGKEFENQ 341 (1027)
T ss_dssp CEEEEEEE---CCCSSEEEESSCCGGGCCCTTEEEEEESSCCE-------EEEEECCSSSSHHHHHHHHHHHTCCGGGTC
T ss_pred CceEEEEE---eCCCceEEEccccccccCccceEEEEEecCCc-------cEEEEEeCCCCHHHHHHHHHHHhCCccccc
Confidence 35677755 555655553322 2334455544432 333333347899999999888754310000
Q ss_pred ccc-ccccCCccccccccccccc--c-----cccCCHHHHHHHHHHHHhCCCCCcEEEEecCCccC
Q 002925 209 RLL-EEKQVPSLVDKFGWCTWDA--F-----YLTVEPAGVWQGVKDFVDGGISPRFLIIDDGWQSI 266 (865)
Q Consensus 209 ~~~-e~k~~P~~~d~lGWCTW~a--f-----~~~vte~~I~~~l~~L~~~G~~~~~vIIDDGWQs~ 266 (865)
.+- ...-.|.|.=++-.|-|.. + ....+++.|++.++.+.+.+||+..+.+|..|+.-
T Consensus 342 ~ltGrp~lpP~WalGy~qsR~gY~s~~~~~y~~~~~~~~v~~vv~~~r~~~IPlDvi~lDidymd~ 407 (1027)
T 2x2h_A 342 VLNKRSVMPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEGYQNNNFPFEGLAVDVDMQDN 407 (1027)
T ss_dssp SSCSSSCCCCGGGGSCEEEEECCCBSSGGGCCCCTTCCBHHHHHHHHHHTTCCCCEEEECGGGSST
T ss_pred ccccCCCCCCHHHhhcccccccccccccccccccccHHHHHHHHHHHHHcCCCCcceEEecccccC
Confidence 000 1222467777777787742 1 11235678999999999999999999999999764
No 25
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=45.19 E-value=55 Score=39.77 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCCccchHHHHHHHhhccCCCCEEeeehhhccccCCCCCCCCCCcce---eecccCCCCCCCcccccceeeeecCCceee
Q 002925 386 KADNYGMKAFTRDLRTRFKGLDDIWVWHALCGAWGGVRPGTTHLNSK---IIPCNLSPGLDGTMDDLAVVKIVEGGIGLV 462 (865)
Q Consensus 386 ~~~p~GL~~~V~~ik~~~~gv~~V~VWHAL~GYWGGv~P~~~~~~~k---~~~~~~spgl~~~~~d~a~~~~~~~g~glv 462 (865)
+.||. .+.++++|++ .|+|.|- |- |=+|.++.+.|+.- -...+...| .+- .-..-.+..+++
T Consensus 319 ~~FPd-p~~mv~~Lh~--~G~k~vl-~i-----~P~I~~~s~~y~e~~~~g~~vk~~~G----~~~--~~~~w~G~~~~~ 383 (817)
T 4ba0_A 319 ENFPT-PLDMMADFKQ--QGVKTVL-IT-----EPFVLTSSKRWDDAVKAKALAKDPQG----QPK--AFELYFGNGGII 383 (817)
T ss_dssp TTCSC-HHHHHHHHHH--TTCEEEE-EE-----CSEEETTSTTHHHHHHTTCBCBCTTS----SBC--CEEETTEEEEEB
T ss_pred ccCCC-HHHHHHHHHH--CCCEEEE-Ee-----CCCccCCcHHHHHHHhCCEEEECCCC----CeE--EEEecCCCceee
Confidence 56775 6999999998 4786554 42 23344444333221 111111111 000 001112334455
Q ss_pred CC--ChhhHHHHHHHHHHHHcCCCEEEeccc
Q 002925 463 HP--SQADDFYDSMYSYLAQAGITGVKVDVI 491 (865)
Q Consensus 463 ~p--~~~~~FYdd~~~~Las~GVDfVKVD~Q 491 (865)
|- .+++++|.+.++.|.+.|||++|.|..
T Consensus 384 DftnP~ar~ww~~~~~~l~~~GvDg~W~Dmn 414 (817)
T 4ba0_A 384 DVFSKEGSRWFSSIYKDLSKQGVAGWWGDLG 414 (817)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCCEEEECCT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 53 468899999999999999999999953
No 26
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=41.84 E-value=65 Score=34.02 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=44.9
Q ss_pred hhhccCChHHHHHHHHHHHHHhhhhccCCCCeEeecCCCccccccc--ccccccccccCCCCCCCCCCCCCCcccccchh
Q 002925 497 VSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLISSMQQCNDFFFLG--TRQISMGRVGDDFWFQDPNGDPNGVYWLQGVH 574 (865)
Q Consensus 497 l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI~CMs~~~~~~~~~--~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~H 574 (865)
++-+||||-++++|.++-.+........... |. ...-..+++.. ..+-.+.|+|-..=-.+ --
T Consensus 148 ia~~YggR~EI~~Avr~i~~~v~~g~l~~~~-I~-e~~i~~~L~t~~~PdpDLlIRTsGE~RLSn-------------FL 212 (256)
T 4h8e_A 148 FAINYGGRAELVHSIKNMFDELHQQGLNSDI-ID-ETYINNHLMTKDYPDPELLIRTSGEQRISN-------------FL 212 (256)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHTTCCGGG-CC-HHHHHTTSTTTTSCCCSEEEECSSCCCCTT-------------SS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHcCCCChhh-CC-HHHHHHhCCCCCCCCCcEEEEcCCCCcccC-------------ch
Confidence 4557999999999887655443221111000 10 00000111111 12233456665432221 13
Q ss_pred hhhhhhcccccCCCcCCCCcccc
Q 002925 575 MIHCSYNSLWMGQFIQPDWDMFQ 597 (865)
Q Consensus 575 i~~~AyNSL~~g~~v~PDWDMF~ 597 (865)
+|++||.-|+.....|||.+-.+
T Consensus 213 LWQ~aYsElyF~d~lWPdF~~~d 235 (256)
T 4h8e_A 213 IWQVSYSEFIFNQKLWPDFDEDE 235 (256)
T ss_dssp TTTTTTCEEEECCSCGGGCCHHH
T ss_pred HHHHcCeEEEECCCCCccCCHHH
Confidence 46899999999999999986543
No 27
>4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens}
Probab=35.90 E-value=49 Score=35.16 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHHHHcCCCEEEecccc
Q 002925 465 SQADDFYDSMYSYLAQAGITGVKVDVIH 492 (865)
Q Consensus 465 ~~~~~FYdd~~~~Las~GVDfVKVD~Q~ 492 (865)
.+..+|.+.+.+++.+.|+|||-+|...
T Consensus 115 ~~r~~F~~s~~~~l~~ygfDGiDiDwE~ 142 (328)
T 4axn_A 115 GDEDKLKDEIIRLVEVYGFDGLDIDLEQ 142 (328)
T ss_dssp TCHHHHHHHHHHHHHHHCCCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 3457899999999999999999999854
No 28
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=32.90 E-value=39 Score=35.03 Aligned_cols=22 Identities=18% Similarity=0.531 Sum_probs=18.6
Q ss_pred hhhhhhcccccCCCcCCCCccc
Q 002925 575 MIHCSYNSLWMGQFIQPDWDMF 596 (865)
Q Consensus 575 i~~~AyNSL~~g~~v~PDWDMF 596 (865)
+|++||.-|+.....|||.+-.
T Consensus 186 LWQ~aYsElyF~d~lWPdF~~~ 207 (225)
T 3ugs_B 186 LWQCSYAEIYFSETLFPSLTKR 207 (225)
T ss_dssp TTTTTTCEEEEECSCSTTCCHH
T ss_pred hhhhhceEEEECCCCCccCCHH
Confidence 4589999999999999999643
No 29
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=31.54 E-value=45 Score=35.19 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=45.8
Q ss_pred hhhccCChHHHHHHHHHHHHHhhhhccCCCCeEeecCCCccccccc--ccccccccccCCCCCCCCCCCCCCcccccchh
Q 002925 497 VSEEYGGRVELGKAYYKGLSNSLKKNFKGTGLISSMQQCNDFFFLG--TRQISMGRVGDDFWFQDPNGDPNGVYWLQGVH 574 (865)
Q Consensus 497 l~~~~ggrv~la~ay~~Al~~S~~~~F~g~~vI~CMs~~~~~~~~~--~~~~~v~R~SDDF~p~dp~s~p~~~~w~~~~H 574 (865)
++-+||||-++++|.++-.++.......... |. ...-..+++.. ..+-.++|+|-..=-.+ --
T Consensus 141 ia~~YggR~EI~~Avr~ia~~v~~g~l~~~~-I~-e~~i~~~L~t~~~PdpDLlIRTsGE~RLSn-------------FL 205 (253)
T 3sgv_B 141 IAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ-ID-EEMLNQHVCMHELAPVDLVIRTGGEHRISN-------------FL 205 (253)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHHTSSCGGG-CC-HHHHHTTSTTTTSCCCCEEEEESSCCCCTT-------------SC
T ss_pred EEecCCCHHHHHHHHHHHHHHHHcCCCChhh-CC-HHHHHHhhcccCCCCCcEEEEecCCCcccC-------------ch
Confidence 4558999999999987655443221111000 10 00000111111 12233556665432221 13
Q ss_pred hhhhhhcccccCCCcCCCCcccc
Q 002925 575 MIHCSYNSLWMGQFIQPDWDMFQ 597 (865)
Q Consensus 575 i~~~AyNSL~~g~~v~PDWDMF~ 597 (865)
+|++||.-|+.....|||.+-.+
T Consensus 206 LWQ~aYsElyFtd~lWPdF~~~d 228 (253)
T 3sgv_B 206 LWQIAYAELYFTDVLWPDFDEQD 228 (253)
T ss_dssp SGGGTTCEEEECCSCGGGCCHHH
T ss_pred HHHHcCEEEEECCCCCccCCHHH
Confidence 46899999999999999996544
No 30
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=30.14 E-value=30 Score=38.25 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.9
Q ss_pred ccCCCEEEecCCC---CCchhhhhccc
Q 002925 612 ICGGPVYVSDSVG---GHDFDLLKQLV 635 (865)
Q Consensus 612 isGGPVYvSD~pG---~hdf~LLk~Lv 635 (865)
+.+|=|+++|.|| .-|.+.|++..
T Consensus 374 ~~~G~i~~p~~PGLGveld~~~l~~y~ 400 (421)
T 4hnl_A 374 PKGGFFYPMEKSGIGITFDEEAAADFP 400 (421)
T ss_dssp CBTTEECCCCSSBSCCEECHHHHTTCB
T ss_pred EECCEEECCCCCCCCeeECHHHHhhcc
Confidence 4678899999999 77888888764
No 31
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=23.72 E-value=1.5e+02 Score=32.24 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=18.5
Q ss_pred cchHHHHHHHhhccCCCCEEeeehh
Q 002925 390 YGMKAFTRDLRTRFKGLDDIWVWHA 414 (865)
Q Consensus 390 ~GL~~~V~~ik~~~~gv~~V~VWHA 414 (865)
.||+.+++.++++ .+.-.+=+||+
T Consensus 81 ~~~~~~~~~vh~~-G~~i~~QL~H~ 104 (343)
T 3kru_A 81 KELKKIVDICKAN-GAVMGIQLAHA 104 (343)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEEECC
T ss_pred HHHHHHHHHHhcC-CceEeeehhhc
Confidence 4999999999974 34446778995
No 32
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=20.48 E-value=1.9e+02 Score=28.27 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=43.5
Q ss_pred EEEEeecC---CHHHHHHHHHHHHHhhcc-----cccccccccCCcccccccccccccccccCCHHHHHHHHHHHHh
Q 002925 181 IAYVHVSD---NPYNIMKEACSALRVHLN-----TFRLLEEKQVPSLVDKFGWCTWDAFYLTVEPAGVWQGVKDFVD 249 (865)
Q Consensus 181 ~~~v~~g~---dp~~vi~eA~k~v~~~~~-----tf~~~e~k~~P~~~d~lGWCTW~af~~~vte~~I~~~l~~L~~ 249 (865)
++|++.|+ |+.+-+++|++.++...+ ..+..+..+++..-...-++.=-.+.++.++..+++.++++..
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~~~~v~~~S~~YeT~p~g~~~qp~FlN~vv~~~T~l~p~~LL~~l~~IE~ 78 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIEL 78 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCCCCcEEEEeeEEEeCCCCCCcccchheeeeeeccCCCHHHHHHHHHHHHH
Confidence 67888884 689999999999987432 2233344443211000111222345678899999999999876
Done!