Query 002926
Match_columns 864
No_of_seqs 342 out of 1727
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 13:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4443 Putative transcription 100.0 1.9E-75 4.1E-80 656.9 12.5 593 143-863 17-620 (694)
2 KOG1244 Predicted transcriptio 99.7 2.3E-18 4.9E-23 180.2 1.3 108 140-247 220-329 (336)
3 KOG1512 PHD Zn-finger protein 99.5 9E-15 1.9E-19 154.3 1.6 101 142-244 256-357 (381)
4 KOG0954 PHD finger protein [Ge 99.3 2.3E-13 5.1E-18 157.0 -0.5 250 143-433 270-536 (893)
5 KOG0383 Predicted helicase [Ge 98.9 1.7E-09 3.7E-14 127.7 6.5 185 169-361 1-264 (696)
6 KOG4299 PHD Zn-finger protein 98.7 5.9E-09 1.3E-13 120.4 3.9 47 201-247 255-303 (613)
7 KOG4299 PHD Zn-finger protein 98.5 6.2E-08 1.3E-12 112.2 3.5 97 144-247 253-442 (613)
8 KOG0825 PHD Zn-finger protein 98.4 6.6E-08 1.4E-12 113.2 1.7 47 201-247 217-264 (1134)
9 KOG4323 Polycomb-like PHD Zn-f 98.4 2.3E-07 4.9E-12 105.4 3.9 118 142-272 81-242 (464)
10 PF00628 PHD: PHD-finger; Int 98.3 8.9E-08 1.9E-12 77.4 0.0 48 201-248 1-50 (51)
11 PF15446 zf-PHD-like: PHD/FYVE 98.3 3.8E-07 8.3E-12 91.5 4.5 86 146-233 1-143 (175)
12 KOG4323 Polycomb-like PHD Zn-f 98.3 7.3E-07 1.6E-11 101.4 5.5 119 210-345 96-228 (464)
13 KOG0956 PHD finger protein AF1 98.2 7.3E-07 1.6E-11 103.8 2.9 132 202-340 8-179 (900)
14 smart00249 PHD PHD zinc finger 98.1 2E-06 4.4E-11 66.5 3.6 46 201-246 1-47 (47)
15 PF00628 PHD: PHD-finger; Int 98.0 1.2E-06 2.5E-11 71.0 0.3 49 146-200 1-49 (51)
16 KOG0955 PHD finger protein BR1 98.0 4.3E-06 9.3E-11 103.0 4.1 133 142-316 217-361 (1051)
17 KOG0956 PHD finger protein AF1 98.0 3E-06 6.5E-11 98.8 2.5 53 146-206 7-69 (900)
18 KOG4443 Putative transcription 97.9 2.8E-06 6E-11 99.1 1.0 89 192-293 11-102 (694)
19 KOG1512 PHD Zn-finger protein 97.9 3.8E-06 8.2E-11 90.1 1.7 83 210-339 275-361 (381)
20 smart00249 PHD PHD zinc finger 97.9 1.1E-05 2.4E-10 62.3 3.3 47 284-338 1-47 (47)
21 KOG1244 Predicted transcriptio 97.8 5.3E-06 1.2E-10 88.5 -0.0 89 207-340 239-330 (336)
22 COG5141 PHD zinc finger-contai 97.7 1.7E-05 3.7E-10 90.0 2.3 134 142-316 191-334 (669)
23 KOG1973 Chromatin remodeling p 97.5 4E-05 8.8E-10 82.8 1.2 39 205-248 226-267 (274)
24 KOG0383 Predicted helicase [Ge 97.5 8.1E-05 1.8E-09 89.0 3.8 92 219-339 1-92 (696)
25 KOG1473 Nucleosome remodeling 97.4 2.6E-05 5.7E-10 95.0 -0.5 93 142-248 342-478 (1414)
26 KOG0825 PHD Zn-finger protein 97.1 0.00021 4.5E-09 85.0 1.5 50 143-200 214-264 (1134)
27 KOG1973 Chromatin remodeling p 96.9 0.00042 9.1E-09 75.1 1.6 33 163-200 231-266 (274)
28 COG5034 TNG2 Chromatin remodel 96.7 0.00075 1.6E-08 72.1 1.8 43 201-247 223-268 (271)
29 cd04718 BAH_plant_2 BAH, or Br 96.7 0.00096 2.1E-08 66.6 2.2 26 223-248 1-26 (148)
30 KOG0955 PHD finger protein BR1 96.6 0.0013 2.8E-08 81.8 3.9 46 201-248 221-268 (1051)
31 KOG0957 PHD finger protein [Ge 96.6 0.00095 2.1E-08 76.5 1.9 55 140-199 540-595 (707)
32 KOG0954 PHD finger protein [Ge 96.5 0.0013 2.9E-08 78.2 2.6 45 201-247 273-319 (893)
33 PF15446 zf-PHD-like: PHD/FYVE 96.5 0.003 6.5E-08 64.2 4.7 33 201-233 1-36 (175)
34 KOG1473 Nucleosome remodeling 96.4 0.0012 2.6E-08 81.2 1.7 129 201-344 346-482 (1414)
35 KOG0957 PHD finger protein [Ge 96.4 0.001 2.3E-08 76.1 0.9 46 201-246 546-595 (707)
36 smart00333 TUDOR Tudor domain. 96.3 0.0074 1.6E-07 49.6 5.2 52 803-858 4-56 (57)
37 KOG1245 Chromatin remodeling c 96.1 0.0012 2.7E-08 84.6 -0.6 47 201-247 1110-1156(1404)
38 COG5034 TNG2 Chromatin remodel 96.0 0.0048 1E-07 66.2 3.0 46 143-200 220-268 (271)
39 PF09465 LBR_tudor: Lamin-B re 95.6 0.029 6.4E-07 47.7 5.5 48 801-848 5-52 (55)
40 COG5141 PHD zinc finger-contai 95.5 0.0062 1.3E-07 70.0 2.0 48 199-248 193-242 (669)
41 KOG1701 Focal adhesion adaptor 95.4 0.0029 6.3E-08 71.7 -1.4 138 146-314 276-427 (468)
42 KOG2752 Uncharacterized conser 95.2 0.014 3.1E-07 64.2 3.1 90 213-316 67-165 (345)
43 smart00743 Agenet Tudor-like d 94.8 0.051 1.1E-06 45.6 4.9 53 803-856 4-57 (61)
44 cd04508 TUDOR Tudor domains ar 93.7 0.15 3.2E-06 40.5 5.1 42 805-847 1-43 (48)
45 KOG1632 Uncharacterized PHD Zn 93.5 0.029 6.3E-07 63.0 1.1 171 163-342 74-296 (345)
46 PF07227 DUF1423: Protein of u 93.0 0.11 2.3E-06 60.1 4.4 62 270-341 124-192 (446)
47 cd04718 BAH_plant_2 BAH, or Br 92.9 0.055 1.2E-06 54.3 1.9 24 173-199 1-24 (148)
48 PF13831 PHD_2: PHD-finger; PD 92.1 0.029 6.3E-07 43.7 -0.9 33 212-246 2-35 (36)
49 KOG1245 Chromatin remodeling c 92.1 0.04 8.6E-07 71.3 -0.3 55 138-200 1102-1156(1404)
50 PF13831 PHD_2: PHD-finger; PD 89.9 0.071 1.5E-06 41.5 -0.7 33 163-199 3-35 (36)
51 PF09038 53-BP1_Tudor: Tumour 87.9 0.8 1.7E-05 44.8 4.8 45 800-845 1-45 (122)
52 KOG0804 Cytoplasmic Zn-finger 87.6 0.33 7.1E-06 56.1 2.3 53 139-204 170-222 (493)
53 KOG1701 Focal adhesion adaptor 87.2 0.41 8.9E-06 55.0 2.7 10 170-179 352-361 (468)
54 PF11793 FANCL_C: FANCL C-term 85.4 0.28 6.1E-06 43.2 0.3 54 145-200 3-62 (70)
55 KOG1952 Transcription factor N 84.6 1 2.2E-05 55.6 4.4 65 142-211 189-263 (950)
56 PF13832 zf-HC5HC2H_2: PHD-zin 83.7 0.98 2.1E-05 42.1 3.1 72 146-231 2-87 (110)
57 PF07227 DUF1423: Protein of u 83.2 0.83 1.8E-05 53.0 2.8 37 194-231 124-163 (446)
58 PF13639 zf-RING_2: Ring finge 81.8 0.57 1.2E-05 37.0 0.6 43 284-339 2-44 (44)
59 PF13639 zf-RING_2: Ring finge 81.0 0.39 8.4E-06 38.0 -0.6 43 145-199 1-43 (44)
60 PF11793 FANCL_C: FANCL C-term 79.3 1.6 3.4E-05 38.6 2.6 56 284-342 4-65 (70)
61 PF12861 zf-Apc11: Anaphase-pr 77.9 0.83 1.8E-05 42.3 0.4 45 201-247 34-78 (85)
62 PF13832 zf-HC5HC2H_2: PHD-zin 77.4 1.8 3.9E-05 40.4 2.5 29 284-317 57-87 (110)
63 PF14446 Prok-RING_1: Prokaryo 76.7 1.4 3.1E-05 37.6 1.5 31 201-231 7-38 (54)
64 PF13901 DUF4206: Domain of un 76.5 1.4 3.1E-05 46.1 1.8 37 195-231 144-189 (202)
65 PF02237 BPL_C: Biotin protein 75.7 8.2 0.00018 31.5 5.6 44 804-851 2-46 (48)
66 KOG1246 DNA-binding protein ju 71.6 3 6.5E-05 52.5 3.2 46 201-247 157-202 (904)
67 KOG4628 Predicted E3 ubiquitin 69.7 2.5 5.5E-05 47.9 1.8 35 145-184 230-264 (348)
68 PF05641 Agenet: Agenet domain 69.6 9.2 0.0002 33.3 4.9 35 804-839 3-40 (68)
69 PF14446 Prok-RING_1: Prokaryo 69.5 2.9 6.3E-05 35.8 1.7 35 144-182 5-39 (54)
70 KOG1632 Uncharacterized PHD Zn 64.5 3.3 7.1E-05 47.0 1.4 39 299-342 74-114 (345)
71 KOG2752 Uncharacterized conser 63.6 4.8 0.0001 45.2 2.4 30 201-231 130-166 (345)
72 PF07076 DUF1344: Protein of u 62.5 7.3 0.00016 34.2 2.8 27 820-848 6-32 (61)
73 KOG1169 Diacylglycerol kinase 62.3 6.7 0.00014 47.7 3.4 81 146-234 46-149 (634)
74 COG5243 HRD1 HRD ubiquitin lig 61.6 2.4 5.1E-05 48.4 -0.4 56 140-208 283-343 (491)
75 PF13771 zf-HC5HC2H: PHD-like 61.3 3 6.6E-05 37.4 0.3 28 201-231 38-68 (90)
76 KOG1169 Diacylglycerol kinase 59.5 2.2 4.7E-05 51.7 -1.2 100 201-321 46-150 (634)
77 PF00130 C1_1: Phorbol esters/ 58.8 8.5 0.00018 31.4 2.5 36 281-317 10-45 (53)
78 COG1107 Archaea-specific RecJ- 57.9 9.6 0.00021 46.0 3.6 32 191-225 51-91 (715)
79 PF12678 zf-rbx1: RING-H2 zinc 57.7 3.4 7.4E-05 36.6 0.0 50 144-200 19-73 (73)
80 PF00567 TUDOR: Tudor domain; 56.8 23 0.00049 31.9 5.2 56 800-858 50-106 (121)
81 KOG2807 RNA polymerase II tran 56.6 7.9 0.00017 43.7 2.5 46 281-339 329-374 (378)
82 KOG1829 Uncharacterized conser 56.3 2.9 6.3E-05 50.3 -0.8 46 196-248 504-558 (580)
83 KOG3612 PHD Zn-finger protein 55.2 9.6 0.00021 45.5 3.1 54 139-202 55-108 (588)
84 PF13771 zf-HC5HC2H: PHD-like 54.3 5.9 0.00013 35.5 1.0 33 143-183 35-70 (90)
85 KOG2272 Focal adhesion protein 52.3 6.6 0.00014 43.0 1.1 58 222-279 160-231 (332)
86 PF05502 Dynactin_p62: Dynacti 52.2 9 0.00019 45.4 2.3 15 725-739 367-381 (483)
87 PF12861 zf-Apc11: Anaphase-pr 52.0 7.1 0.00015 36.3 1.1 52 144-200 21-78 (85)
88 PF15057 DUF4537: Domain of un 51.1 27 0.0006 34.1 5.0 40 805-845 1-40 (124)
89 PF07649 C1_3: C1-like domain; 50.2 6.3 0.00014 29.2 0.4 29 201-229 2-30 (30)
90 KOG1844 PHD Zn-finger proteins 49.4 9.8 0.00021 44.4 2.0 41 297-344 98-138 (508)
91 KOG1081 Transcription factor N 47.8 12 0.00026 44.2 2.4 44 142-199 87-130 (463)
92 cd00162 RING RING-finger (Real 46.9 7.5 0.00016 29.1 0.4 41 147-200 2-42 (45)
93 PF13901 DUF4206: Domain of un 46.2 16 0.00035 38.4 2.8 36 145-181 153-189 (202)
94 KOG2041 WD40 repeat protein [G 45.4 15 0.00032 45.4 2.6 46 201-248 1119-1164(1189)
95 PHA02929 N1R/p28-like protein; 45.0 12 0.00025 40.8 1.6 42 143-184 173-214 (238)
96 KOG0696 Serine/threonine prote 44.7 7.8 0.00017 45.4 0.2 94 193-317 56-155 (683)
97 KOG1044 Actin-binding LIM Zn-f 42.4 20 0.00044 43.2 3.1 44 261-308 152-200 (670)
98 COG5151 SSL1 RNA polymerase II 41.9 14 0.00031 41.5 1.7 18 190-208 305-322 (421)
99 PF14445 Prok-RING_2: Prokaryo 41.6 3.1 6.7E-05 35.3 -2.6 23 201-223 9-31 (57)
100 PRK14637 hypothetical protein; 41.5 47 0.001 33.7 5.1 43 802-847 95-137 (151)
101 KOG3576 Ovo and related transc 41.3 5.7 0.00012 42.4 -1.4 60 281-340 144-220 (267)
102 PF05502 Dynactin_p62: Dynacti 41.0 25 0.00055 41.7 3.6 31 213-248 4-34 (483)
103 PF02576 DUF150: Uncharacteris 39.7 48 0.001 32.7 4.8 44 802-847 84-131 (141)
104 PRK11911 flgD flagellar basal 38.5 79 0.0017 32.0 6.1 40 802-842 90-129 (140)
105 PF02736 Myosin_N: Myosin N-te 38.2 1.1E+02 0.0024 24.6 5.7 38 806-846 2-39 (42)
106 KOG1280 Uncharacterized conser 37.0 21 0.00045 40.8 2.0 33 163-210 7-43 (381)
107 PF00130 C1_1: Phorbol esters/ 36.1 24 0.00052 28.7 1.7 31 201-231 13-45 (53)
108 KOG4628 Predicted E3 ubiquitin 35.9 19 0.00042 41.1 1.6 44 201-247 231-274 (348)
109 PF10497 zf-4CXXC_R1: Zinc-fin 35.4 19 0.00042 34.4 1.3 60 144-209 7-80 (105)
110 smart00184 RING Ring finger. E 34.9 11 0.00025 27.0 -0.3 39 147-199 1-39 (39)
111 PF12678 zf-rbx1: RING-H2 zinc 34.2 28 0.00061 30.8 2.0 29 301-339 45-73 (73)
112 cd00029 C1 Protein kinase C co 33.2 25 0.00054 27.8 1.4 35 282-317 11-45 (50)
113 smart00547 ZnF_RBZ Zinc finger 33.0 27 0.00059 24.7 1.4 9 192-200 1-9 (26)
114 smart00109 C1 Protein kinase C 32.8 23 0.00049 27.7 1.1 34 282-317 11-44 (49)
115 KOG2807 RNA polymerase II tran 32.0 29 0.00064 39.4 2.1 19 236-254 341-361 (378)
116 PF13437 HlyD_3: HlyD family s 31.6 1.2E+02 0.0027 27.4 5.9 45 803-847 52-104 (105)
117 PRK08330 biotin--protein ligas 31.5 93 0.002 33.1 5.7 47 804-854 187-235 (236)
118 KOG3576 Ovo and related transc 30.8 13 0.00029 39.8 -0.7 12 163-174 116-127 (267)
119 cd01734 YlxS_C YxlS is a Bacil 30.4 1E+02 0.0022 27.9 5.0 35 802-838 22-59 (83)
120 KOG3612 PHD Zn-finger protein 30.4 35 0.00076 41.0 2.5 50 192-250 59-109 (588)
121 PF07593 UnbV_ASPIC: ASPIC and 30.2 78 0.0017 27.7 4.1 16 802-818 1-16 (71)
122 PRK09618 flgD flagellar basal 29.9 1.3E+02 0.0028 30.6 6.1 77 761-845 44-131 (142)
123 PF04216 FdhE: Protein involve 29.9 18 0.0004 39.6 0.2 14 213-226 196-209 (290)
124 PRK14633 hypothetical protein; 29.5 98 0.0021 31.3 5.2 44 802-847 91-137 (150)
125 KOG1734 Predicted RING-contain 29.5 17 0.00038 40.2 -0.1 42 140-182 220-264 (328)
126 PTZ00275 biotin-acetyl-CoA-car 29.0 88 0.0019 34.6 5.2 41 804-848 236-277 (285)
127 PF12773 DZR: Double zinc ribb 28.9 49 0.0011 26.8 2.4 9 214-222 12-20 (50)
128 PF13341 RAG2_PHD: RAG2 PHD do 28.9 35 0.00075 31.0 1.6 41 298-339 28-69 (78)
129 KOG2462 C2H2-type Zn-finger pr 28.5 41 0.00089 37.4 2.5 52 285-340 190-251 (279)
130 PF00641 zf-RanBP: Zn-finger i 28.4 25 0.00055 25.9 0.6 18 191-208 2-27 (30)
131 KOG0804 Cytoplasmic Zn-finger 28.3 20 0.00044 42.1 0.2 45 201-251 177-222 (493)
132 PF08746 zf-RING-like: RING-li 28.3 18 0.00038 29.4 -0.2 41 202-246 1-43 (43)
133 KOG1829 Uncharacterized conser 28.2 20 0.00044 43.4 0.1 36 145-181 512-548 (580)
134 KOG1734 Predicted RING-contain 27.8 18 0.00039 40.1 -0.3 78 282-371 224-305 (328)
135 COG2888 Predicted Zn-ribbon RN 27.6 41 0.00088 29.7 1.8 18 192-209 26-48 (61)
136 PRK14559 putative protein seri 27.6 49 0.0011 40.8 3.2 23 201-224 3-25 (645)
137 KOG3970 Predicted E3 ubiquitin 27.3 93 0.002 34.0 4.8 89 285-387 53-145 (299)
138 cd01726 LSm6 The eukaryotic Sm 27.3 2.1E+02 0.0045 24.9 6.2 34 802-839 7-40 (67)
139 PRK06955 biotin--protein ligas 27.1 1.2E+02 0.0025 33.8 5.8 47 803-853 247-294 (300)
140 PRK14559 putative protein seri 26.7 44 0.00095 41.2 2.6 9 164-172 1-9 (645)
141 KOG3268 Predicted E3 ubiquitin 26.6 19 0.0004 37.9 -0.5 37 145-184 166-204 (234)
142 PLN03208 E3 ubiquitin-protein 26.4 33 0.00072 36.3 1.3 33 143-183 17-49 (193)
143 PRK14639 hypothetical protein; 26.3 1.3E+02 0.0029 30.1 5.5 43 802-847 85-128 (140)
144 KOG4198 RNA-binding Ran Zn-fin 26.1 99 0.0022 34.6 4.9 21 190-210 61-89 (280)
145 PRK14873 primosome assembly pr 26.0 46 0.001 41.1 2.6 41 159-222 378-430 (665)
146 KOG1246 DNA-binding protein ju 26.0 45 0.00099 42.4 2.6 51 140-199 151-201 (904)
147 KOG1844 PHD Zn-finger proteins 25.7 40 0.00087 39.5 2.0 43 204-247 90-133 (508)
148 PF00412 LIM: LIM domain; Int 25.6 29 0.00063 28.3 0.6 13 244-256 24-36 (58)
149 PF06003 SMN: Survival motor n 25.4 1.2E+02 0.0026 33.4 5.4 46 803-848 70-116 (264)
150 KOG3970 Predicted E3 ubiquitin 25.4 12 0.00026 40.4 -2.1 77 163-248 20-102 (299)
151 COG5082 AIR1 Arginine methyltr 25.1 53 0.0011 34.8 2.5 52 140-209 56-107 (190)
152 PRK14890 putative Zn-ribbon RN 25.1 57 0.0012 28.7 2.2 8 192-199 24-31 (59)
153 KOG0827 Predicted E3 ubiquitin 24.5 24 0.00052 40.9 -0.1 38 144-185 4-41 (465)
154 PRK14644 hypothetical protein; 24.4 1.1E+02 0.0024 30.6 4.5 49 803-852 83-134 (136)
155 PF04216 FdhE: Protein involve 24.2 43 0.00093 36.8 1.7 34 143-176 171-209 (290)
156 COG1198 PriA Primosomal protei 24.1 59 0.0013 40.7 3.0 40 160-221 431-482 (730)
157 smart00744 RINGv The RING-vari 24.0 23 0.00051 29.3 -0.2 36 146-185 1-39 (49)
158 PF11717 Tudor-knot: RNA bindi 23.3 2E+02 0.0043 24.1 5.2 37 803-840 2-40 (55)
159 TIGR01562 FdhE formate dehydro 23.2 69 0.0015 36.1 3.1 15 213-227 209-223 (305)
160 KOG0269 WD40 repeat-containing 23.1 41 0.0009 41.9 1.4 40 191-231 766-810 (839)
161 PRK06009 flgD flagellar basal 22.9 1.9E+02 0.004 29.5 5.7 40 801-846 93-134 (140)
162 KOG1493 Anaphase-promoting com 22.8 28 0.0006 32.1 -0.0 68 261-341 12-79 (84)
163 PF10080 DUF2318: Predicted me 22.6 41 0.0009 32.2 1.1 36 142-180 33-68 (102)
164 cd00029 C1 Protein kinase C co 22.0 48 0.001 26.2 1.2 31 201-231 13-45 (50)
165 PF13717 zinc_ribbon_4: zinc-r 21.9 57 0.0012 25.5 1.5 27 285-311 5-36 (36)
166 PLN02638 cellulose synthase A 21.3 82 0.0018 41.0 3.5 54 140-200 13-66 (1079)
167 PRK14631 hypothetical protein; 21.2 2.1E+02 0.0045 29.9 5.8 54 802-857 114-173 (174)
168 KOG1280 Uncharacterized conser 21.0 51 0.0011 37.8 1.5 9 332-340 109-117 (381)
169 TIGR00008 infA translation ini 20.9 1.5E+02 0.0032 26.7 4.0 25 819-844 7-31 (68)
170 TIGR00595 priA primosomal prot 20.7 77 0.0017 37.8 3.0 52 268-342 212-263 (505)
171 KOG3053 Uncharacterized conser 20.2 29 0.00063 38.3 -0.5 56 283-341 21-80 (293)
172 PRK04023 DNA polymerase II lar 20.1 83 0.0018 40.7 3.2 8 213-220 650-657 (1121)
No 1
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=100.00 E-value=1.9e-75 Score=656.86 Aligned_cols=593 Identities=40% Similarity=0.683 Sum_probs=498.3
Q ss_pred ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCCCC
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA 222 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~r 222 (864)
...+|.+|...| .+....|+.|..|+..||++|+..+.....+ .+.|+|+.|++|..|+..+++.++++|+.|+.
T Consensus 17 ~~~mc~l~~s~G---~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l--~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDv 91 (694)
T KOG4443|consen 17 VCLMCPLCGSSG---KGRAGRLLACSDCGQKYHPYCVTSWAQHAVL--SGGWRCPSCRVCEACGTTGDPKKFLLCKRCDV 91 (694)
T ss_pred hhhhhhhhcccc---ccccCcchhhhhhcccCCcchhhHHHhHHHh--cCCcccCCceeeeeccccCCcccccccccccc
Confidence 445777777655 4556689999999999999999998876544 35599999999999999999999999999999
Q ss_pred cccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCcee
Q 002926 223 AYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVC 302 (864)
Q Consensus 223 aYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVq 302 (864)
.||.+|+.|++..++.+.|+|+.|+.|..|+.+.++ +..+|..+++.|..|.. ..|||+|.+.|++.+..+|++
T Consensus 92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg--~s~~~~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~ 165 (694)
T KOG4443|consen 92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG--LSLDLQEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVC 165 (694)
T ss_pred cccccccCCccccccCcccccHHHHhhhhccccccc--cchhhhccCcccccccc----cccCchHHHhhhhccchhhHH
Confidence 999999999999999999999999999999998877 67788889999999985 679999999999999999999
Q ss_pred ccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCCcCCCChHHHHHHhhhhhhhhcHHHHHHHHHhcCCCCcccc
Q 002926 303 CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEI 382 (864)
Q Consensus 303 CD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~IK~~edai~r~Wr~re~~~~dliaslR~aqGLp~~EEi 382 (864)
|+.|.+|.|..|+++.++.|.++.++ +.|.|.+||.+++++|++.+++++.|.+....+..++..++++.-|...-.
T Consensus 166 c~~c~rwsh~~c~~~sdd~~~q~~vD--~~~~CS~CR~es~qvKdi~~~vqe~~~~k~~~~~~~~~tls~~a~lq~~~~- 242 (694)
T KOG4443|consen 166 CSICQRWSHGGCDGISDDKYMQAQVD--LQYKCSTCRGESYQVKDISDALQETWKAKDKPDKILIATLSAQAALQMHHA- 242 (694)
T ss_pred HHHhcccccCCCCccchHHHHHHhhh--hhcccceeehhhhhhhhHHHHHHhhcchhhccccceeehhhhhhhhhhccc-
Confidence 99999999999999999999998877 899999999999999999999999999999999999998888866533322
Q ss_pred ccCCCCCCcccCCcchhhhhhccccccccCCCCCCCCCchhhhhccccCccCCCccCCCCCCCCCCCCCCCCCCcccccc
Q 002926 383 FSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHS 462 (864)
Q Consensus 383 f~~~P~sdDe~~~p~~~~~~~~~~~~~s~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (864)
+ +.++.+++.+++.++++.+++...+..+.+.+...+|..+ .+ ..+.|+.+
T Consensus 243 --------------~-----~~~s~~~k~~~~~~~~~~~s~a~gq~s~~~~~~~~~g~~~-----dp-----~~~~e~~s 293 (694)
T KOG4443|consen 243 --------------V-----IGDSSADKAGSSANSGSATSGASGQLSLTTANTPTLGVSL-----DP-----VKLQEVGS 293 (694)
T ss_pred --------------c-----ccccccccccCcccCCcccccccccCCcccccccccCccc-----ch-----hhhhhccc
Confidence 2 2566788889999999999999999999888888888777 22 45667777
Q ss_pred cC----CCCCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCcccccccceeeccCCCccce-eEeecCCCCCCCCCC
Q 002926 463 YG----NSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSGE 537 (864)
Q Consensus 463 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 537 (864)
|+ ..+..+...+.. +...+.+..|++++-.-+-.+.+..+.+.||+.+|...| ++||++||+++++ +
T Consensus 294 E~~a~~~v~~e~vv~d~t-------~~~~~~~~~e~~~~p~~r~~~~~~m~~~~~vt~~e~~~r~~r~~Stk~~~~~~-~ 365 (694)
T KOG4443|consen 294 ERKAKLLVKQEAVVKDST-------ETPTVNSRAEEIGTPEKRLNANATMTAINQVTSEEKPTRTARIKSTKPPDSDS-E 365 (694)
T ss_pred hhhhhhccchhhhhhccc-------cCcccccchhhccCccccccccceeeeeeccccccccceeeecCCCCCCCcch-h
Confidence 77 345555555544 444556778999999999999999999999985554445 9999999999999 6
Q ss_pred ccccccccccccceeeEEEeeccccccccCCCCCCCcchhcccccccCCCCCChhhhhccccccccccCCCCcCCCCCcc
Q 002926 538 DDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRV 617 (864)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (864)
+...+++...++++++||||+|+|+||+.++.+.++.+-.-+-+ + ++..++ |+++
T Consensus 366 ~~~r~a~edn~ll~~~l~~n~st~kl~~~~~t~~~v~~~~~~a~-----l----~~~~l~----------------~~~~ 420 (694)
T KOG4443|consen 366 NNLRSAAEDNALLAKKLVINSSSRKLNVISSTSAHVGSASSSAP-----L----SQRKLI----------------GVRA 420 (694)
T ss_pred hhhhhccchhhHHhhhcccccCccccccccccccccccccccCh-----h----hHHHhc----------------cCcC
Confidence 88888999999999999999999999999999998874322211 1 222222 5888
Q ss_pred ccccccccceecccCCceeeeccccccccccCcccCCCCCCCCCCccccccccccchhhhhhhhcccccceeEEecCccc
Q 002926 618 DHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQ 697 (864)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (864)
|-+++.|++..+ |+.+.- +.++.++.++..
T Consensus 421 ~s~~k~rsle~e---------gs~~~~-----------------------------------------~~v~~~~~a~~s 450 (694)
T KOG4443|consen 421 PSMGKVRSLEDE---------GSRGVI-----------------------------------------GPVTTATAAAGS 450 (694)
T ss_pred cchhhhhhhhhh---------cccCCC-----------------------------------------CCcCCcCccccc
Confidence 888888888662 222221 122333333322
Q ss_pred cccCCCccccCCCCcccccCCCCCCCCceeeeecCCCccCCCCCcCchHH--HhhhhhcccccCCCCCccccccccccc-
Q 002926 698 LESRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEE--EKSLIKGQRSKRKRPSPFTEKTLFNED- 774 (864)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~k~~~~~~~~~~~~~~~~--~~~~~~gqrskrkr~~~~~~~~~~~~~- 774 (864)
.+.+.+.. ...+.+-+.+..++.+|+|+++|++|+.+.|+|..++..| .+...+|+|+|+||+++..+++.++++
T Consensus 451 sgss~~~~--~s~t~g~~~s~~~~~~~~l~~a~a~~~s~~~~s~~~v~~~~E~~~d~~~a~~~n~~~n~~~~~~~~~~~~ 528 (694)
T KOG4443|consen 451 SGSSGDVK--TSTTPGTVASGQKSQRPLLKSAIAKPNSAVQISEPGVGSEAEQKSDGKGARSKNKRQNQAPPPPPPPEDQ 528 (694)
T ss_pred ccCCCCCC--CCCCCCcCCcchhhhhhhhhhhhhcCCcccccccccccccccccCCcccccccccccCCCCCCCCCcchh
Confidence 22222222 2233444668899999999999999999999987776655 559999999999999999999999999
Q ss_pred hhhhhhhhh-chhhhhhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCcccceecCcee
Q 002926 775 EDAAQSNQD-SLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGKQG 851 (864)
Q Consensus 775 ~~~~~~~~~-~~~~~~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~~~~~~~~~gk~~ 851 (864)
|....+++| ++.||||||+|||++||+||+|||+|||-.++|+|.+|+|+.|+ .+||.|.|++|+|.++|+++|+|+
T Consensus 529 q~l~~s~~d~~~~d~~~~a~~~~~~~g~~~~~~~t~vhs~~~ns~~~g~vt~~~s~~~~s~~~~~~~~~~v~~~~~~~~~ 608 (694)
T KOG4443|consen 529 QQLQPSPHDVSRLDEMVDAEWILKKLGKDAKTKRTEVHSKSMNSWPKGNVTIVISTGQTSPLEVQLKPGAVKTVELGKQG 608 (694)
T ss_pred hhcCCCHHHHHHHHhhhccccccccCCCCCCcceeccccCCCCCCCCccceeeeccCCcccceeeccccccccccccccc
Confidence 999999999 79999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred eEeeeccccccC
Q 002926 852 VRFVPQKQKRSM 863 (864)
Q Consensus 852 vr~~~~~~k~~~ 863 (864)
|||+|++|||.+
T Consensus 609 v~f~pe~~k~~~ 620 (694)
T KOG4443|consen 609 VRFLPEKQKRVR 620 (694)
T ss_pred cccChhhhhccc
Confidence 999999999876
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.70 E-value=2.3e-18 Score=180.21 Aligned_cols=108 Identities=28% Similarity=0.734 Sum_probs=98.8
Q ss_pred CCccccccccccccc--ccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeec
Q 002926 140 QSNTNVMCRLCFVGE--NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFC 217 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG--~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~C 217 (864)
.+.+..+|.+|.+.. +.....+++|+.|..|+++-|+.||.....++..+..+.|+|.+|++|.+|+...+++.+|+|
T Consensus 220 ~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred cccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 456778999999765 455677889999999999999999999988888888999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 218 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 218 d~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
+.|+++||++||.|++...|.|.|.|..|.
T Consensus 300 ddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 999999999999999999999999998875
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.47 E-value=9e-15 Score=154.30 Aligned_cols=101 Identities=22% Similarity=0.527 Sum_probs=91.0
Q ss_pred cccccccccccccc-cCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCC
Q 002926 142 NTNVMCRLCFVGEN-EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRC 220 (864)
Q Consensus 142 ~~dd~C~vC~~gG~-~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C 220 (864)
.....|.+|..+.. ......+.||+|..|-.+||++|+.++.+...+++.+.|.|.+|+.|.+|+.+..++.+++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~C 335 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVC 335 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccc
Confidence 45668999998653 33456678999999999999999999998888888999999999999999999999999999999
Q ss_pred CCcccccccCCCCcCCCCCCcccc
Q 002926 221 DAAYHCYCQHPPHKNVSSGPYLCP 244 (864)
Q Consensus 221 ~raYH~~CL~Ppl~svP~g~W~CP 244 (864)
+++||++|++ +..+|.|.|.|.
T Consensus 336 DRG~HT~CVG--L~~lP~G~WICD 357 (381)
T KOG1512|consen 336 DRGPHTLCVG--LQDLPRGEWICD 357 (381)
T ss_pred cCCCCccccc--cccccCccchhh
Confidence 9999999999 788999999997
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.31 E-value=2.3e-13 Score=157.02 Aligned_cols=250 Identities=19% Similarity=0.281 Sum_probs=159.5
Q ss_pred ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-----cccccccCCCCCceeec
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-----ICEICRRTGDPNKFMFC 217 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-----~C~VCgk~gd~~~LL~C 217 (864)
++.+|.+|..+. ++...+|++|+.|+-..|..|.++. .++.+.|.|..|. .|..|-+.|.. |---
T Consensus 270 edviCDvCrspD---~e~~neMVfCd~Cn~cVHqaCyGIl-----e~p~gpWlCr~Calg~~ppCvLCPkkGGa--mK~~ 339 (893)
T KOG0954|consen 270 EDVICDVCRSPD---SEEANEMVFCDKCNICVHQACYGIL-----EVPEGPWLCRTCALGIEPPCVLCPKKGGA--MKPT 339 (893)
T ss_pred ccceeceecCCC---ccccceeEEeccchhHHHHhhhcee-----ecCCCCeeehhccccCCCCeeeccccCCc--cccc
Confidence 677999999864 4567799999999999999999984 3457999999997 68888655432 1111
Q ss_pred CCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCC
Q 002926 218 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 297 (864)
Q Consensus 218 d~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg 297 (864)
..=-.|-|..|.-= +|.-.+-|+.= .-..++...+...||..- |-+|... .
T Consensus 340 ~sgT~wAHvsCALw----IPEVsie~~ek----mePItkfs~IpesRwslv----------------C~LCk~k-----~ 390 (893)
T KOG0954|consen 340 KSGTKWAHVSCALW----IPEVSIECPEK----MEPITKFSHIPESRWSLV----------------CNLCKVK-----S 390 (893)
T ss_pred CCCCeeeEeeeeec----cceeeccCHhh----cCcccccCCCcHHHHHHH----------------HHHhccc-----C
Confidence 11227888888651 22222333321 123344556677888762 3333322 2
Q ss_pred CCceecc--CCCCccccccCCCChHHHhhhcc--C-CCCceeCCCCCCCCcCCCChHHHHHHhhhhh----hhhcHHHHH
Q 002926 298 TPMVCCD--VCQRWVHCQCDGISDEKYLQFQV--D-GNLQYRCPTCRGECYQVRDLEDAVRELWRRK----DMADKDLIA 368 (864)
Q Consensus 298 ~~MVqCD--~C~~WfH~eCd~l~dE~y~~~gi--d-~~~~Y~CptCr~~~~~IK~~edai~r~Wr~r----e~~~~dlia 368 (864)
+--|+|. .|...||..|..-.-.....++. + -...=+|+.|-.+... +.+... .++-+++ +....+--.
T Consensus 391 GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~~-~s~g~~-~e~p~p~~~~p~~~~~e~~~ 468 (893)
T KOG0954|consen 391 GACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHREG-KSLGNE-AESPHPRCHLPEQSVGEGHR 468 (893)
T ss_pred cceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeecccccccccc-cccccc-cCCCCccccChhhhhhhhhh
Confidence 3347776 69999999998632111111111 1 1234567777654321 122211 1111222 122222223
Q ss_pred HHHHhcCCCCccccccCCCCCCcccCC---cchhhhhhccccccccCCCCCCCCCchhhhhccccCcc
Q 002926 369 SLRAAAGLPTEDEIFSISPYSDDEENG---PVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKK 433 (864)
Q Consensus 369 slR~aqGLp~~EEif~~~P~sdDe~~~---p~~~~~~~~~~~~~s~k~~~~k~~~~~k~~~~~~~~~~ 433 (864)
+--+++-|...|+.|+....-+|.+.. |..+++++|+|||+.+|+++++++.++|+++.....|+
T Consensus 469 ~s~r~q~l~~~e~ef~~~v~~~diae~l~~~e~~vs~iynywklkrks~~n~~lippk~d~~~~i~kk 536 (893)
T KOG0954|consen 469 SSDRAQKLQELEGEFYDIVRNEDIAELLSMPEFAVSAIYNYWKLKRKSRFNKELIPPKSDEVGLIAKK 536 (893)
T ss_pred hhHHHHHHhhcchhHhhhhhHHHHHHHhcCchHHHHHHHHHHHHhhhccCCCcCCCCcchhccchhhH
Confidence 344566788889999999988887753 88999999999999999999999999999999877665
No 5
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.89 E-value=1.7e-09 Score=127.69 Aligned_cols=185 Identities=22% Similarity=0.384 Sum_probs=128.6
Q ss_pred CCCccccccccccCccccccCCCCCcCCCCCc-------------------cccccccCCCCCceeecCCCCCccccccc
Q 002926 169 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------------------ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 229 (864)
Q Consensus 169 ~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------------------~C~VCgk~gd~~~LL~Cd~C~raYH~~CL 229 (864)
.|.+.||..|+.+.....+ +..|.|+.|- .|.+|+..+ .++.|+.|..+||.+|+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~---~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl 74 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEP---EMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGG---ELLWCDTCPASFHASCL 74 (696)
T ss_pred CCCcccCcCCCCcccccCC---cCCccCcchhhcccccccccCCcchhhhhhhhhhcCCC---cEEEeccccHHHHHHcc
Confidence 4899999999997655332 7899999986 899999988 89999999999999999
Q ss_pred CCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCc-c-------------ccCCCccccccccccc---------
Q 002926 230 HPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGY-T-------------CCDACGRLFVKGNYCP--------- 286 (864)
Q Consensus 230 ~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~-~-------------lC~~C~elf~KgnyCp--------- 286 (864)
++++...|.+.|.|++| .|..- ..+..+++.|+|.... . .-..-+++++++..++
T Consensus 75 ~~pl~~~p~~~~~c~Rc-~~p~~-~~k~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e 152 (696)
T KOG0383|consen 75 GPPLTPQPNGEFICPRC-FCPKN-AGKIEKILGWRWKPTPKPREGNQGVISPRRSNGIVEREFFVKWQGLSYWHCSWKSE 152 (696)
T ss_pred CCCCCcCCccceeeeee-ccCCC-cccccccceeEecCCCCccccCcCccCCcccccchhhhcccccccCCccchhHHHH
Confidence 99999999888999988 44432 2234456667765421 1 1123445566655422
Q ss_pred -----------cccccccC------------CCCCCceeccCCCCccccccCCCC-----hHHHhh--------hc-cCC
Q 002926 287 -----------VCLKVYRD------------SESTPMVCCDVCQRWVHCQCDGIS-----DEKYLQ--------FQ-VDG 329 (864)
Q Consensus 287 -----------VC~K~Y~D------------~dg~~MVqCD~C~~WfH~eCd~l~-----dE~y~~--------~g-id~ 329 (864)
++...+.+ .+....++|+.|+..||..|.... .-.... +. ...
T Consensus 153 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k 232 (696)
T KOG0383|consen 153 LLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWK 232 (696)
T ss_pred HHhhhhcccchHhhhhhhhcccCccccccccccCccccccccchhhhhheeccccccccchhhhhhcccccceeeEeeec
Confidence 12222211 134567788889999999998731 000000 00 113
Q ss_pred CCceeCCCCCCCCcCCCChHHHHHHhhhhhhh
Q 002926 330 NLQYRCPTCRGECYQVRDLEDAVRELWRRKDM 361 (864)
Q Consensus 330 ~~~Y~CptCr~~~~~IK~~edai~r~Wr~re~ 361 (864)
.+.|.=.++..+..+++.|..+.+++|.+++.
T Consensus 233 ~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~ 264 (696)
T KOG0383|consen 233 ELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK 264 (696)
T ss_pred cCCccccCCCcCCCCcccCcccccccccccCc
Confidence 45777788888888999999999999998877
No 6
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.73 E-value=5.9e-09 Score=120.42 Aligned_cols=47 Identities=30% Similarity=0.872 Sum_probs=43.6
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCC--cCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPH--KNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl--~svP~g~W~CP~C~ 247 (864)
+|..|+..+..+.+++|+.|++.||+.||.||+ ..+|.+.|+|+.|.
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECK 303 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCe
Confidence 899999999887889999999999999999995 57999999999997
No 7
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.49 E-value=6.2e-08 Score=112.17 Aligned_cols=97 Identities=23% Similarity=0.590 Sum_probs=76.0
Q ss_pred cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-----------------------
Q 002926 144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR----------------------- 200 (864)
Q Consensus 144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk----------------------- 200 (864)
.++|..|.+.|.- .++|+|++|+++||+.||.|+... ..++.+.|+|++|.
T Consensus 253 ~~fCsaCn~~~~F-----~~~i~CD~Cp~sFH~~CLePPl~~-eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t 326 (613)
T KOG4299|consen 253 EDFCSACNGSGLF-----NDIICCDGCPRSFHQTCLEPPLEP-ENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFT 326 (613)
T ss_pred HHHHHHhCCcccc-----ccceeecCCchHHHHhhcCCCCCc-ccCCCCccccCCCeeeeecccchhhhhhccchHHHHH
Confidence 6699999987731 367999999999999999998654 34568999999997
Q ss_pred -------------------------------------------------------------------cccccccCCCCC-
Q 002926 201 -------------------------------------------------------------------ICEICRRTGDPN- 212 (864)
Q Consensus 201 -------------------------------------------------------------------~C~VCgk~gd~~- 212 (864)
+|..|..+.-..
T Consensus 327 ~~~~~IDs~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~g~~ssg~~~~~~~c~~~~~~s~ 406 (613)
T KOG4299|consen 327 QFVSKIDSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDENGIDSSGTELLCGRCSKTQTESV 406 (613)
T ss_pred HHHHhhhccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCccCCCccCcchhhcccCcchhhhh
Confidence 566676553322
Q ss_pred ceeecCCCCCcccccccCCCCcCCCCC--CccccCCC
Q 002926 213 KFMFCRRCDAAYHCYCQHPPHKNVSSG--PYLCPKHT 247 (864)
Q Consensus 213 ~LL~Cd~C~raYH~~CL~Ppl~svP~g--~W~CP~C~ 247 (864)
.++-|+.|...||..|+ ++....|.. .|.||.+.
T Consensus 407 ~vl~c~ye~s~~h~dc~-~~~~~~ps~ss~~k~p~~s 442 (613)
T KOG4299|consen 407 VVLDCQYEQSPEHPDCK-DDSKALPSLSSKWKCPRVS 442 (613)
T ss_pred hhhccccccCCCCcccc-chhhhCCCCcccccCCCCC
Confidence 36889999999999999 455556644 57999875
No 8
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.43 E-value=6.6e-08 Score=113.18 Aligned_cols=47 Identities=23% Similarity=0.770 Sum_probs=44.7
Q ss_pred cccccccCCCCCceeecCCCCCc-ccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAA-YHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~ra-YH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
-|.+|.....++.||+|+.|+.+ ||++||+|++..+|-+.|||+.|.
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 79999999888899999999998 999999999999999999999986
No 9
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.37 E-value=2.3e-07 Score=105.43 Aligned_cols=118 Identities=18% Similarity=0.379 Sum_probs=78.4
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc---------------------
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------------------- 200 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk--------------------- 200 (864)
.....|.+|...- .....++..|+.|.++||..|-.+.... .+.|.+.+|.
T Consensus 81 ~~e~~~nv~~s~~---~~p~~e~~~~~r~~~~~~q~~~i~~~~~-----~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l 152 (464)
T KOG4323|consen 81 SSELNPNVLTSET---VLPENEKVICGRCKSGYHQGCNIPRFPS-----LDIGESTECVFPIFSQEGGALKKGRLARPSL 152 (464)
T ss_pred ccccCCccccccc---ccCchhhhhhhhhccCcccccCccCcCc-----CCccccccccccccccccccccccccccccc
Confidence 3556788888643 2234478999999999999998764321 1233333332
Q ss_pred -----------------ccc--ccccCCCCCceeecCCCCCcccccccCCCCcC----CCCCCccccCCCcccCCCCCCC
Q 002926 201 -----------------ICE--ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTKCHSCGSNVP 257 (864)
Q Consensus 201 -----------------~C~--VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~s----vP~g~W~CP~C~~C~~CG~~~p 257 (864)
.|. .|+.++..++||+|+.|..|||..|+.|+... -+...|+|..|.+ ...-
T Consensus 153 ~y~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~-----~~~~ 227 (464)
T KOG4323|consen 153 PYPEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR-----GPKK 227 (464)
T ss_pred cCcccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc-----chhh
Confidence 233 56677888899999999999999999997753 3567899988753 1111
Q ss_pred CCCCccccccCcccc
Q 002926 258 GNGLSVRWFLGYTCC 272 (864)
Q Consensus 258 gk~ls~rW~~~~~lC 272 (864)
......+|.....++
T Consensus 228 ~~r~t~~~~dv~~la 242 (464)
T KOG4323|consen 228 VPRLTLRWADVLHLA 242 (464)
T ss_pred ccccccccccccchh
Confidence 122455776654444
No 10
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.34 E-value=8.9e-08 Score=77.45 Aligned_cols=48 Identities=31% Similarity=0.863 Sum_probs=40.6
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCc--CCCCCCccccCCCc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK--NVSSGPYLCPKHTK 248 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~--svP~g~W~CP~C~~ 248 (864)
+|.+|+...+.+.||+|+.|++|||..|++++.. ..+...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5889998777789999999999999999999876 34456999999753
No 11
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.34 E-value=3.8e-07 Score=91.55 Aligned_cols=86 Identities=26% Similarity=0.685 Sum_probs=63.6
Q ss_pred cccccccccccCcccCCceeecCCCCccccccccccCccccccCC---CC--CcCCCCCc--------------cccccc
Q 002926 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH---WS--SWKCPSCR--------------ICEICR 206 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~---~~--~W~CpeCk--------------~C~VCg 206 (864)
+|.+|...|.. .....||+|.+|..+||..||++......++. .. -.+|..|. .|..|.
T Consensus 1 ~C~~C~~~g~~--~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~ 78 (175)
T PF15446_consen 1 TCDTCGYEGDD--RNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK 78 (175)
T ss_pred CcccccCCCCC--ccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence 48888753321 12238999999999999999999765433332 23 34799997 899997
Q ss_pred cCCC--------------------------------------CCceeecCCCCCcccccccCCCC
Q 002926 207 RTGD--------------------------------------PNKFMFCRRCDAAYHCYCQHPPH 233 (864)
Q Consensus 207 k~gd--------------------------------------~~~LL~Cd~C~raYH~~CL~Ppl 233 (864)
..|. ++.|++|..|.++||+..|.+..
T Consensus 79 ~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 79 KPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 6543 22588999999999999998753
No 12
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.28 E-value=7.3e-07 Score=101.43 Aligned_cols=119 Identities=24% Similarity=0.410 Sum_probs=76.8
Q ss_pred CCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCccc---CCCCCCCCCCC---------ccccccCccccCCCcc
Q 002926 210 DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGSNVPGNGL---------SVRWFLGYTCCDACGR 277 (864)
Q Consensus 210 d~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~---~CG~~~pgk~l---------s~rW~~~~~lC~~C~e 277 (864)
.++.+..|.+|...||..|.-|.... .+.|.+..|+.=. .-+..+.+... ...|...
T Consensus 96 p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~--------- 164 (464)
T KOG4323|consen 96 PENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSG--------- 164 (464)
T ss_pred CchhhhhhhhhccCcccccCccCcCc--CCccccccccccccccccccccccccccccccCcccccccCcc---------
Confidence 34578999999999999999875432 3456666655321 11111111111 1112110
Q ss_pred ccccccccccccccccCCCCCCceeccCCCCccccccCCC--ChHHHhhhccCCCCceeCCCCCCCCcCC
Q 002926 278 LFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI--SDEKYLQFQVDGNLQYRCPTCRGECYQV 345 (864)
Q Consensus 278 lf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l--~dE~y~~~gid~~~~Y~CptCr~~~~~I 345 (864)
+.-..-|.||+++-...++ .||+|+.|..|||..|... .++++ .++++.|+|.+|.+....+
T Consensus 165 -~~~n~qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~----~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 165 -HKVNLQCSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELA----GDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred -ccccceeeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhhc----cCccceEeehhhccchhhc
Confidence 0011238899988777777 9999999999999999973 33432 4689999999999875443
No 13
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.19 E-value=7.3e-07 Score=103.77 Aligned_cols=132 Identities=22% Similarity=0.480 Sum_probs=85.7
Q ss_pred ccccccCCC--CCceeecC--CCCCcccccccCCCCcCCCCCCccccCCC--------cccCCCCCC--CCCCCcccccc
Q 002926 202 CEICRRTGD--PNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHT--------KCHSCGSNV--PGNGLSVRWFL 267 (864)
Q Consensus 202 C~VCgk~gd--~~~LL~Cd--~C~raYH~~CL~Ppl~svP~g~W~CP~C~--------~C~~CG~~~--pgk~ls~rW~~ 267 (864)
|.||.+-.. ++.|+.|| .|..+.|..|++ +..+|.+.|||..|. +|.-|.-+. ..+.+..-|.+
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 558875433 45799999 799999999999 788999999999994 688887543 12334455754
Q ss_pred Ccccc---CCCcccc------------c-c---ccccccccccccCCC--CCCceeccC--CCCccccccCC---CChHH
Q 002926 268 GYTCC---DACGRLF------------V-K---GNYCPVCLKVYRDSE--STPMVCCDV--CQRWVHCQCDG---ISDEK 321 (864)
Q Consensus 268 ~~~lC---~~C~elf------------~-K---gnyCpVC~K~Y~D~d--g~~MVqCD~--C~~WfH~eCd~---l~dE~ 321 (864)
. .| +..-+|- + . .+.|.||...-++++ .+--++|.. |.+.||..|.. ++-|+
T Consensus 86 V--VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 86 V--VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred E--EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceec
Confidence 1 22 1111110 0 0 124889987765443 344567864 99999999987 33332
Q ss_pred HhhhccCCCCceeCCCCCC
Q 002926 322 YLQFQVDGNLQYRCPTCRG 340 (864)
Q Consensus 322 y~~~gid~~~~Y~CptCr~ 340 (864)
- +.--+.+-+|-+|+-
T Consensus 164 ~---gn~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 164 E---GNISDNVKYCGYCKY 179 (900)
T ss_pred c---ccccccceechhHHH
Confidence 1 111245788999983
No 14
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.03 E-value=1.2e-06 Score=70.95 Aligned_cols=49 Identities=29% Similarity=0.833 Sum_probs=38.0
Q ss_pred cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
+|.+|+..+ ..++||.|+.|.++||..|++++....... ...|+|+.|.
T Consensus 1 ~C~vC~~~~-----~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~-~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-----DDGDMIQCDSCNRWYHQECVGPPEKAEEIP-SGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-----TTSSEEEBSTTSCEEETTTSTSSHSHHSHH-SSSBSSHHHH
T ss_pred eCcCCCCcC-----CCCCeEEcCCCChhhCcccCCCChhhccCC-CCcEECcCCc
Confidence 588898743 244999999999999999999987643322 3499999885
No 16
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.98 E-value=4.3e-06 Score=102.98 Aligned_cols=133 Identities=22% Similarity=0.484 Sum_probs=79.2
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-------cccccccCCCCCce
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------ICEICRRTGDPNKF 214 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------~C~VCgk~gd~~~L 214 (864)
..+.+|.||.++.. .....+++||.|+.++|..|.+. +-++++.|.|..|. .|..|-..+.
T Consensus 217 ~~D~~C~iC~~~~~---~n~n~ivfCD~Cnl~VHq~Cygi-----~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~g---- 284 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC---QNSNVIVFCDGCNLAVHQECYGI-----PFIPEGQWLCRRCLQSPQRPVRCLLCPSKGG---- 284 (1051)
T ss_pred CCCccceeeccccc---CCCceEEEcCCCcchhhhhccCC-----CCCCCCcEeehhhccCcCcccceEeccCCCC----
Confidence 45669999998752 23358999999999999999995 33468999999995 4555543321
Q ss_pred eecC-CCCCcccccccCCCCcCCC--CCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccccccccc
Q 002926 215 MFCR-RCDAAYHCYCQHPPHKNVS--SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKV 291 (864)
Q Consensus 215 L~Cd-~C~raYH~~CL~Ppl~svP--~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~ 291 (864)
.++. .=++|-|..|.-- .+.+. ...+ .-+.....++...||.. .|.+|...
T Consensus 285 AFkqt~dgrw~Hv~caiw-ipev~F~nt~~---------~E~I~~i~~i~~aRwkL----------------~cy~cK~~ 338 (1051)
T KOG0955|consen 285 AFKQTDDGRWAHVVCAIW-IPEVSFANTVF---------LEPIDSIENIPPARWKL----------------TCYICKQK 338 (1051)
T ss_pred cceeccCCceeeeehhhc-ccccccccchh---------hccccchhcCcHhhhhc----------------eeeeeccC
Confidence 1111 1245566666541 11110 0001 11222344556677765 24444332
Q ss_pred ccCCCCCCceeccC--CCCccccccCC
Q 002926 292 YRDSESTPMVCCDV--CQRWVHCQCDG 316 (864)
Q Consensus 292 Y~D~dg~~MVqCD~--C~~WfH~eCd~ 316 (864)
. -+--|||.. |-.|||..|..
T Consensus 339 ~----~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 339 G----LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred C----CCcceecchhhhhhhhhhhhHh
Confidence 1 133477764 99999999986
No 17
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.98 E-value=3e-06 Score=98.83 Aligned_cols=53 Identities=25% Similarity=0.684 Sum_probs=41.5
Q ss_pred cccccccccccCcccCCceeecC--CCCccccccccccCccccccCCCCCcCCCCCc--------cccccc
Q 002926 146 MCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------ICEICR 206 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk--------~C~VCg 206 (864)
=|.+|.+- .++. ...||+|| .|--+.|..|.++. .++.+.|+|..|. .|.+|-
T Consensus 7 GCCVCSDE--rGWa-eNPLVYCDG~nCsVAVHQaCYGIv-----qVPtGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 7 GCCVCSDE--RGWA-ENPLVYCDGHNCSVAVHQACYGIV-----QVPTGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred ceeeecCc--CCCc-cCceeeecCCCceeeeehhcceeE-----ecCCCchhhhhhhhhhhhccceeeccc
Confidence 48899862 2232 24899999 79999999999983 4568999999996 677774
No 18
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.92 E-value=2.8e-06 Score=99.11 Aligned_cols=89 Identities=25% Similarity=0.619 Sum_probs=63.3
Q ss_pred CCcCCCCCccccccccCCC--CCceeecCCCCCcccccccCCCCcCC-CCCCccccCCCcccCCCCCCCCCCCccccccC
Q 002926 192 SSWKCPSCRICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLG 268 (864)
Q Consensus 192 ~~W~CpeCk~C~VCgk~gd--~~~LL~Cd~C~raYH~~CL~Ppl~sv-P~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~ 268 (864)
..=.|..|.+|.+|+..|. ...|+.|..|+..||.+|+..-+... -.+.|.|+.|+.|..|+.... | ..
T Consensus 11 ~~~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD-------~-~k 82 (694)
T KOG4443|consen 11 SDKAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD-------P-KK 82 (694)
T ss_pred cchhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC-------c-cc
Confidence 3445677779999987664 34699999999999999999533322 245599999999999995421 1 15
Q ss_pred ccccCCCcccccccccccccccccc
Q 002926 269 YTCCDACGRLFVKGNYCPVCLKVYR 293 (864)
Q Consensus 269 ~~lC~~C~elf~KgnyCpVC~K~Y~ 293 (864)
+.+|.+|-..| ...|.+...
T Consensus 83 f~~Ck~cDvsy-----h~yc~~P~~ 102 (694)
T KOG4443|consen 83 FLLCKRCDVSY-----HCYCQKPPN 102 (694)
T ss_pred ccccccccccc-----cccccCCcc
Confidence 77898887554 445555543
No 19
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.91 E-value=3.8e-06 Score=90.06 Aligned_cols=83 Identities=25% Similarity=0.541 Sum_probs=62.9
Q ss_pred CCCceeecCCCCCcccccccCCCCcC---CCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccc
Q 002926 210 DPNKFMFCRRCDAAYHCYCQHPPHKN---VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCP 286 (864)
Q Consensus 210 d~~~LL~Cd~C~raYH~~CL~Ppl~s---vP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCp 286 (864)
..+.++.|..|...||.+|+.-+... +-...|.|..|..|.-|+...
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~------------------------------ 324 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV------------------------------ 324 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc------------------------------
Confidence 34479999999999999999954432 346799999997666664321
Q ss_pred cccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCC-CCC
Q 002926 287 VCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP-TCR 339 (864)
Q Consensus 287 VC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~Cp-tCr 339 (864)
-..+|+-||.|++-||..|+++. .-|.+.|+|- .|.
T Consensus 325 ---------~E~E~~FCD~CDRG~HT~CVGL~--------~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 325 ---------IESEHLFCDVCDRGPHTLCVGLQ--------DLPRGEWICDMRCR 361 (381)
T ss_pred ---------cchheeccccccCCCCccccccc--------cccCccchhhhHHH
Confidence 13457899999999999999973 3467899996 354
No 20
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.77 E-value=5.3e-06 Score=88.52 Aligned_cols=89 Identities=24% Similarity=0.526 Sum_probs=66.8
Q ss_pred cCCCCCceeecCCCCCcccccccCCCCc---CCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccc
Q 002926 207 RTGDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN 283 (864)
Q Consensus 207 k~gd~~~LL~Cd~C~raYH~~CL~Ppl~---svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~Kgn 283 (864)
+.+-++.++.|..|++.=|..||+-... .+-...|.|-.|..|.-||..
T Consensus 239 kt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgts---------------------------- 290 (336)
T KOG1244|consen 239 KTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTS---------------------------- 290 (336)
T ss_pred ccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCc----------------------------
Confidence 4555668999999999999999994322 245678999888766666542
Q ss_pred ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 340 (864)
Q Consensus 284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~ 340 (864)
-+| .+++-||.|++-||..|+... +..+|++.|.|..|-.
T Consensus 291 --------end---dqllfcddcdrgyhmyclspp------m~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 291 --------END---DQLLFCDDCDRGYHMYCLSPP------MVEPPEGSWSCHLCLE 330 (336)
T ss_pred --------CCC---ceeEeecccCCceeeEecCCC------cCCCCCCchhHHHHHH
Confidence 122 357889999999999998742 1246899999999964
No 22
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.69 E-value=1.7e-05 Score=89.99 Aligned_cols=134 Identities=23% Similarity=0.489 Sum_probs=83.2
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-------cccccccCCCCCce
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------ICEICRRTGDPNKF 214 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------~C~VCgk~gd~~~L 214 (864)
.-++.|.+|.+..+ +..+-+++|++|.-+.|..|.++. -++++.|.|..|. .|..|-... -
T Consensus 191 ~~d~~C~~c~~t~~---eN~naiVfCdgC~i~VHq~CYGI~-----f~peG~WlCrkCi~~~~~i~~C~fCps~d----G 258 (669)
T COG5141 191 EFDDICTKCTSTHN---ENSNAIVFCDGCEICVHQSCYGIQ-----FLPEGFWLCRKCIYGEYQIRCCSFCPSSD----G 258 (669)
T ss_pred hhhhhhHhcccccc---CCcceEEEecCcchhhhhhcccce-----ecCcchhhhhhhcccccceeEEEeccCCC----C
Confidence 35678888987663 334579999999999999999984 4568999999996 355554332 1
Q ss_pred eecC-CCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccccccccccc
Q 002926 215 MFCR-RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYR 293 (864)
Q Consensus 215 L~Cd-~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~ 293 (864)
.+|. .=++|-|.-|..- ++.+.-+... ..-......+..+.+|..+ |.+|.+.
T Consensus 259 aFkqT~dgrW~H~iCA~~-~pelsF~~l~-------~~dpI~~i~sVs~srwkl~----------------C~iCk~~-- 312 (669)
T COG5141 259 AFKQTSDGRWGHVICAMF-NPELSFGHLL-------SKDPIDNIASVSSSRWKLG----------------CLICKEF-- 312 (669)
T ss_pred ceeeccCCchHhHhHHHh-cchhcccccc-------ccchhhhhcccchhhHhhe----------------eeEEccc--
Confidence 2333 2356777777652 1111111000 0001122334566788763 4455443
Q ss_pred CCCCCCceeccC--CCCccccccCC
Q 002926 294 DSESTPMVCCDV--CQRWVHCQCDG 316 (864)
Q Consensus 294 D~dg~~MVqCD~--C~~WfH~eCd~ 316 (864)
++.-|||.. |-+.||..|..
T Consensus 313 ---~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 313 ---GGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred ---Ccceeeecccchhhhhhhhhhh
Confidence 355688875 99999999976
No 23
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.46 E-value=4e-05 Score=82.80 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=33.8
Q ss_pred cccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCCc
Q 002926 205 CRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 205 Cgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
|...| .|+-|+. |+ .|||+.|++ +...|.+.|||+.|..
T Consensus 226 qvsyg---~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 226 QVSYG---KMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKA 267 (274)
T ss_pred ccccc---cccccCCCCCCcceEEEeccc--cccCCCCcccchhhhh
Confidence 55556 8999997 99 999999999 7788999999999863
No 24
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.45 E-value=8.1e-05 Score=88.98 Aligned_cols=92 Identities=24% Similarity=0.494 Sum_probs=65.1
Q ss_pred CCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCC
Q 002926 219 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEST 298 (864)
Q Consensus 219 ~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~ 298 (864)
.|.+.||..|+.|.+...+.+.|.||.|.. -+......... ..+...++|.+|. +++
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~---~~~~~~~~~~~--------------~~~~~~e~c~ic~------~~g 57 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCES---SSAQVEAKDDD--------------WDDAEQEACRICA------DGG 57 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhh---cccccccccCC--------------cchhhhhhhhhhc------CCC
Confidence 489999999999988888889999999842 11111111111 2344567898997 467
Q ss_pred CceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926 299 PMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339 (864)
Q Consensus 299 ~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr 339 (864)
.+|+|+.|+.|||..|++..-. ..+...|.|+-|.
T Consensus 58 ~~l~c~tC~~s~h~~cl~~pl~------~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 58 ELLWCDTCPASFHASCLGPPLT------PQPNGEFICPRCF 92 (696)
T ss_pred cEEEeccccHHHHHHccCCCCC------cCCccceeeeeec
Confidence 8899999999999999973211 1244569999994
No 25
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.44 E-value=2.6e-05 Score=95.01 Aligned_cols=93 Identities=18% Similarity=0.412 Sum_probs=74.0
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc---------------------
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------------------- 200 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk--------------------- 200 (864)
.-++.|.+|.+.+ .+++|..|++.||+.|+.++.. .++...|.|.-|.
T Consensus 342 ~~ddhcrf~~d~~--------~~lc~Et~prvvhlEcv~hP~~---~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~i 410 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLG--------DLLCCETCPRVVHLECVFHPRF---AVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSI 410 (1414)
T ss_pred eecccccccCccc--------ceeecccCCceEEeeecCCccc---cCCCccchhhhhhhhccCcccccccChhhcccce
Confidence 3568999999877 8999999999999999998654 4457889998886
Q ss_pred -------------------cccccccCCCCCceeecCC-CCCcccc-cccCCCC--cCCCCCCccccCCCc
Q 002926 201 -------------------ICEICRRTGDPNKFMFCRR-CDAAYHC-YCQHPPH--KNVSSGPYLCPKHTK 248 (864)
Q Consensus 201 -------------------~C~VCgk~gd~~~LL~Cd~-C~raYH~-~CL~Ppl--~svP~g~W~CP~C~~ 248 (864)
.|.+|+..+ .++.|.. |+..||. .|++... .-++.+.|.|+.|+.
T Consensus 411 R~~~iG~dr~gr~ywfi~rrl~Ie~~de---t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~ 478 (1414)
T KOG1473|consen 411 RHTPIGRDRYGRKYWFISRRLRIEGMDE---TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII 478 (1414)
T ss_pred eccCCCcCccccchhceeeeeEEecCCC---cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence 455555333 6788886 9999998 9999432 346788999999873
No 26
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.00021 Score=84.96 Aligned_cols=50 Identities=32% Similarity=0.757 Sum_probs=39.8
Q ss_pred ccccccccccccccCcccCCceeecCCCCcc-ccccccccCccccccCCCCCcCCCCCc
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCKSCGKK-YHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~ra-YH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
...-|.+|.... ..+.||.|+.|+.. ||.+||+|++-..+ -+.|+|++|.
T Consensus 214 E~~~C~IC~~~D-----pEdVLLLCDsCN~~~YH~YCLDPdl~eiP---~~eWYC~NC~ 264 (1134)
T KOG0825|consen 214 EEVKCDICTVHD-----PEDVLLLCDSCNKVYYHVYCLDPDLSESP---VNEWYCTNCS 264 (1134)
T ss_pred ccccceeeccCC-----hHHhheeecccccceeeccccCccccccc---ccceecCcch
Confidence 345799998754 34589999999998 99999999775333 5789999994
No 27
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.86 E-value=0.00042 Score=75.05 Aligned_cols=33 Identities=27% Similarity=0.889 Sum_probs=28.8
Q ss_pred ceeecCC--CC-ccccccccccCccccccCCCCCcCCCCCc
Q 002926 163 RMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 163 eLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
+||-||. |+ .+||+.|+++... +.+.|+|+.|+
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~~~-----PkgkWyC~~C~ 266 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLKTK-----PKGKWYCPRCK 266 (274)
T ss_pred cccccCCCCCCcceEEEeccccccC-----CCCcccchhhh
Confidence 9999995 99 9999999999643 46889999995
No 28
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.68 E-value=0.00075 Score=72.10 Aligned_cols=43 Identities=23% Similarity=0.708 Sum_probs=34.9
Q ss_pred cccccccCCCCCceeecC--CCCC-cccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCR--RCDA-AYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd--~C~r-aYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
+| .|.... -..|+-|| .|.+ |||..|++ +...|.|.|||+.|.
T Consensus 223 YC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk 268 (271)
T COG5034 223 YC-FCQQVS-YGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK 268 (271)
T ss_pred EE-Eecccc-cccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence 44 676543 33899999 6865 99999999 788999999999985
No 29
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.65 E-value=0.00096 Score=66.58 Aligned_cols=26 Identities=35% Similarity=0.859 Sum_probs=24.4
Q ss_pred cccccccCCCCcCCCCCCccccCCCc
Q 002926 223 AYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 223 aYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
+||++||.||+..+|.+.|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 59999999999999999999999973
No 30
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.65 E-value=0.0013 Score=81.80 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=40.1
Q ss_pred cccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926 201 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 201 ~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
+|.+|.+..-. +.+++|+.|+.++|++|++ .+.+|.+.|+|..|..
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhcc
Confidence 78899887655 5799999999999999999 5668899999999874
No 31
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.58 E-value=0.00095 Score=76.47 Aligned_cols=55 Identities=22% Similarity=0.541 Sum_probs=43.8
Q ss_pred CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCC-CCCcCCCCC
Q 002926 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH-WSSWKCPSC 199 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~-~~~W~CpeC 199 (864)
.......|.||+..- .++.|+.||.|..+||+.||.|++...+... ...|+|.+|
T Consensus 540 ~~a~~ysCgiCkks~-----dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 540 PKAMNYSCGICKKST-----DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ccccceeeeeeccch-----hhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 344567899999753 3558999999999999999999987655443 569999988
No 32
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.53 E-value=0.0013 Score=78.17 Aligned_cols=45 Identities=33% Similarity=0.900 Sum_probs=39.4
Q ss_pred cccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|.+|..+..+ +.|++|+.|....|..|.+ +..+|.+.|.|..|.
T Consensus 273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCA 319 (893)
T ss_pred eeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcc
Confidence 78899877433 4799999999999999999 788999999999985
No 33
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.51 E-value=0.003 Score=64.16 Aligned_cols=33 Identities=27% Similarity=0.891 Sum_probs=25.0
Q ss_pred cccccccCC---CCCceeecCCCCCcccccccCCCC
Q 002926 201 ICEICRRTG---DPNKFMFCRRCDAAYHCYCQHPPH 233 (864)
Q Consensus 201 ~C~VCgk~g---d~~~LL~Cd~C~raYH~~CL~Ppl 233 (864)
+|.+|...+ .-..|++|..|-.+||..||++-.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCcc
Confidence 366775432 233799999999999999999743
No 34
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.44 E-value=0.0012 Score=81.19 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=82.5
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV 280 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~ 280 (864)
.|.+|.+.+ .+++|..|++.||..|+.+|...+|...|-|--|..|..-|....--..+-.| .+..|..=+.-.+
T Consensus 346 hcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~--~~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 346 HCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNV--DSIRHTPIGRDRY 420 (1414)
T ss_pred cccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcc--cceeccCCCcCcc
Confidence 677888777 89999999999999999999999999999999988766444321000001111 1122222221111
Q ss_pred ccc------ccccccccccCCCCCCceeccC-CCCcccc-ccCCCChHHHhhhccCCCCceeCCCCCCCCcC
Q 002926 281 KGN------YCPVCLKVYRDSESTPMVCCDV-CQRWVHC-QCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 344 (864)
Q Consensus 281 Kgn------yCpVC~K~Y~D~dg~~MVqCD~-C~~WfH~-eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~ 344 (864)
.-. -|.||. + ...+++|.. |++.||. .|+.- .|+... -.++.|.|+.|.-..+.
T Consensus 421 gr~ywfi~rrl~Ie~-----~-det~l~yysT~pqly~ll~cLd~---~~~e~~-L~d~i~~~~ee~~rqM~ 482 (1414)
T KOG1473|consen 421 GRKYWFISRRLRIEG-----M-DETLLWYYSTCPQLYHLLRCLDR---TYVEMY-LCDGIWERREEIIRQMG 482 (1414)
T ss_pred ccchhceeeeeEEec-----C-CCcEEEEecCcHHHHHHHHHhch---HHHHHh-hccchhhhHHHHHHhcc
Confidence 111 266665 2 345678877 9999999 99763 222221 24678999999765544
No 35
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.42 E-value=0.001 Score=76.14 Aligned_cols=46 Identities=26% Similarity=0.689 Sum_probs=41.8
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCC----CCccccCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSS----GPYLCPKH 246 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~----g~W~CP~C 246 (864)
.|.+|++..+...+++|+.|...||..||.||++-+|. ..|.|..|
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 79999999888789999999999999999999998884 36999987
No 36
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.32 E-value=0.0074 Score=49.58 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=44.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeecc
Q 002926 803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQK 858 (864)
Q Consensus 803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~~ 858 (864)
++|..|.+.+ .|+.|+.|+|.++... ..+.|.|.| |..+++. .+.+|.+|..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~--~~~l~~l~~~ 56 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVP--PSDLRPLPEE 56 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEe--HHHeecCCCC
Confidence 5789999999 9999999999999884 349999999 9998776 6779988865
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.12 E-value=0.0012 Score=84.58 Aligned_cols=47 Identities=30% Similarity=0.969 Sum_probs=44.9
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|.+|...++...|+.|+.|..+||++|+.|.+..+|.+.|+||.|.
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 89999998888899999999999999999999999999999999986
No 38
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.96 E-value=0.0048 Score=66.17 Aligned_cols=46 Identities=24% Similarity=0.761 Sum_probs=35.9
Q ss_pred ccccccccccccccCcccCCceeecC--CCCc-cccccccccCccccccCCCCCcCCCCCc
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCK--SCGK-KYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~r-aYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
.+.+| .|.... ..+||-|| .|-+ +||+.|+++..+ |.+.|+|++|+
T Consensus 220 e~lYC-fCqqvS------yGqMVaCDn~nCkrEWFH~~CVGLk~p-----PKG~WYC~eCk 268 (271)
T COG5034 220 EELYC-FCQQVS------YGQMVACDNANCKREWFHLECVGLKEP-----PKGKWYCPECK 268 (271)
T ss_pred ceeEE-Eecccc------cccceecCCCCCchhheeccccccCCC-----CCCcEeCHHhH
Confidence 45577 587643 23999999 7984 999999998543 57999999995
No 39
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=95.55 E-value=0.029 Score=47.68 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=36.2
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecC
Q 002926 801 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 848 (864)
Q Consensus 801 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~g 848 (864)
|=++|.+|.+.||-++.|++|.|++.-.-+-.-.|.++||...+|..+
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~ 52 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELKEN 52 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEECC
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEeccc
Confidence 458999999999999999999999975555569999999998776654
No 40
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.54 E-value=0.0062 Score=69.99 Aligned_cols=48 Identities=29% Similarity=0.619 Sum_probs=39.0
Q ss_pred CccccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926 199 CRICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 199 Ck~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
|..|.+|.....+ +-+++|+.|..+.|..|.+ +.-+|.|.|+|..|..
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~ 242 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIY 242 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcc
Confidence 4466777765543 3689999999999999999 5678999999999873
No 41
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=95.35 E-value=0.0029 Score=71.70 Aligned_cols=138 Identities=21% Similarity=0.358 Sum_probs=72.6
Q ss_pred cccccccccccCcccCCceeecCCCCccccccccccCcccccc------CCCCCcCCCCCc-----cccccccCCCCCce
Q 002926 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL------FHWSSWKCPSCR-----ICEICRRTGDPNKF 214 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~------v~~~~W~CpeCk-----~C~VCgk~gd~~~L 214 (864)
+|.-|...-. .+-.-|.-=++-||..|..-..=.+.+ ...+.-+|-.|- .|.+|+..-.+ .+
T Consensus 276 iC~~C~K~V~------g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d-~i 348 (468)
T KOG1701|consen 276 ICAFCHKTVS------GQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMD-RI 348 (468)
T ss_pred hhhhcCCccc------CcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHH-HH
Confidence 6777775321 134456666778888776542111000 013455677774 68888765422 33
Q ss_pred eecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccc--ccccccccc
Q 002926 215 MFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN--YCPVCLKVY 292 (864)
Q Consensus 215 L~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~Kgn--yCpVC~K~Y 292 (864)
| ..|+++||..|.. |+.|..|-...+- .--..+..+|..| ||+.- -|.+|.+..
T Consensus 349 L--rA~GkayHp~CF~---------------Cv~C~r~ldgipF----tvd~~n~v~Cv~d---fh~kfAPrCs~C~~PI 404 (468)
T KOG1701|consen 349 L--RALGKAYHPGCFT---------------CVVCARCLDGIPF----TVDSQNNVYCVPD---FHKKFAPRCSVCGNPI 404 (468)
T ss_pred H--HhcccccCCCceE---------------EEEeccccCCccc----cccCCCceeeehh---hhhhcCcchhhccCCc
Confidence 3 3689999976654 4444444322111 1111245566655 34432 288888776
Q ss_pred cCCCCCC-ceeccCCCCcccccc
Q 002926 293 RDSESTP-MVCCDVCQRWVHCQC 314 (864)
Q Consensus 293 ~D~dg~~-MVqCD~C~~WfH~eC 314 (864)
...++.+ .|.=..=++-||.+|
T Consensus 405 ~P~~G~~etvRvvamdr~fHv~C 427 (468)
T KOG1701|consen 405 LPRDGKDETVRVVAMDRDFHVNC 427 (468)
T ss_pred cCCCCCcceEEEEEccccccccc
Confidence 5544432 232222356677777
No 42
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=95.16 E-value=0.014 Score=64.19 Aligned_cols=90 Identities=20% Similarity=0.419 Sum_probs=55.0
Q ss_pred ceeecCCCCCcccccccCCCCcCCCCCCccccCCCccc---CCCCC--CCCCCCccccccCccccCCCcccccccccccc
Q 002926 213 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGSN--VPGNGLSVRWFLGYTCCDACGRLFVKGNYCPV 287 (864)
Q Consensus 213 ~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~---~CG~~--~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpV 287 (864)
.+.+|-.|.-++|..=... ....++.|+|.-|..|. +|... ........-|.++| ++.|| .
T Consensus 67 ~agvC~~C~~~CH~~H~lv--eL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNf-----------qG~~C-~ 132 (345)
T KOG2752|consen 67 MAGVCYACSLSCHDGHELV--ELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNF-----------QGLFC-K 132 (345)
T ss_pred hceeEEEeeeeecCCceee--eccccCCcccccccccccccccccccccccccchhhhhhhh-----------cceeE-E
Confidence 5778888888888654442 11235678886544333 23210 11112222343321 44566 6
Q ss_pred ccccccC---CCCCCceeccCCCCccc-cccCC
Q 002926 288 CLKVYRD---SESTPMVCCDVCQRWVH-CQCDG 316 (864)
Q Consensus 288 C~K~Y~D---~dg~~MVqCD~C~~WfH-~eCd~ 316 (864)
|.+.|.+ ..++.|+||..|+-||| ..|.+
T Consensus 133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred ecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 9999977 34688999999999999 66765
No 43
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=94.81 E-value=0.051 Score=45.62 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=39.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCC-cccceecCceeeEeee
Q 002926 803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDS-RVKTLELGKQGVRFVP 856 (864)
Q Consensus 803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~-~~~~~~~gk~~vr~~~ 856 (864)
.+|-+|||....++.|+.|+|+.|.. ..++.|.|++. ...+.++-...+|.+|
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHP 57 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCC
Confidence 57999999999999999999999988 33599999882 2223334455566554
No 44
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=93.67 E-value=0.15 Score=40.54 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=35.0
Q ss_pred cceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-Ccccceec
Q 002926 805 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 847 (864)
Q Consensus 805 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~ 847 (864)
|..+.+.++.|+.|+.|+|..+.. ..++.|.|.| |..+++.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 567888898899999999999984 3349999999 99988764
No 45
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=93.50 E-value=0.029 Score=63.00 Aligned_cols=171 Identities=18% Similarity=0.311 Sum_probs=94.1
Q ss_pred ceeecCCCCccccccc--cccCccccccCCCCCcCCCCCc------------cccccccCCCCC----ceeecCCCCCcc
Q 002926 163 RMLSCKSCGKKYHRNC--LKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDPN----KFMFCRRCDAAY 224 (864)
Q Consensus 163 eLL~Cd~C~raYH~~C--L~p~~~~~~~v~~~~W~CpeCk------------~C~VCgk~gd~~----~LL~Cd~C~raY 224 (864)
.++-|+.|-.+||..| ++++.... .+...|.|..|. .| +|.....+. ..+-+..|..|+
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~--p~~~~~~c~~c~~~~~~~~~~~~l~~-~~~~~~~~~~s~s~~~~~~~~~~~~ 150 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEA--PKEDPKVCDECKEAQDGMSESDGLSC-VCRQDDSELLSPSFYFGKRGCQFWV 150 (345)
T ss_pred hhhccccccccccccccccCchhhcC--Cccccccccccchhhhhhhhhcccee-ecccccccccccccccCCccccccc
Confidence 7899999999999999 88766533 346789999996 33 454432211 235677888899
Q ss_pred cccccCCCCcC-CCCCCccccCCCcccCCC-------------------CCC-CCC-CCcccccc----Ccc------cc
Q 002926 225 HCYCQHPPHKN-VSSGPYLCPKHTKCHSCG-------------------SNV-PGN-GLSVRWFL----GYT------CC 272 (864)
Q Consensus 225 H~~CL~Ppl~s-vP~g~W~CP~C~~C~~CG-------------------~~~-pgk-~ls~rW~~----~~~------lC 272 (864)
|..|+..-... .-.....|+.|..=..-+ ... ... ..+..|.+ .+. .|
T Consensus 151 ~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (345)
T KOG1632|consen 151 KLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGSKSKTRKKRNRESELEEKKRKHFSNEELTEPAREPVD 230 (345)
T ss_pred cchhhhhhhhhhhhcccchhhhcccccccccccccccccccccceecccCcccccchhhhhhhhhccCcccccccccCCC
Confidence 98888842221 112234444443110100 000 000 00001110 000 22
Q ss_pred CCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChH--HHhhhccCCCCceeCCCCCCCC
Q 002926 273 DACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDE--KYLQFQVDGNLQYRCPTCRGEC 342 (864)
Q Consensus 273 ~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE--~y~~~gid~~~~Y~CptCr~~~ 342 (864)
..+.. ...+.+|..|+-.|... .-|++|+.|..|||..|+.+... .|... .+..|+|+.|....
T Consensus 231 ~~~~~-~~~~~~~~~cg~~~~~~--~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~---~~~~~~c~~~~~~~ 296 (345)
T KOG1632|consen 231 ESEAP-DYSKLICDPCGLSDANK--KFEICCDLCESWFHGDCVQIFEARKRLNEI---RNEVYKCPHCTVLK 296 (345)
T ss_pred ccccc-ccccccccccCcchHHH--HHHHHHHHHHHHhcccccccccchhhhhhh---hccceecCceeecc
Confidence 11111 11223466676554332 34788999999999999996433 23221 23579999998643
No 46
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=92.95 E-value=0.11 Score=60.07 Aligned_cols=62 Identities=24% Similarity=0.690 Sum_probs=41.5
Q ss_pred cccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhcc-------CCCCceeCCCCCCC
Q 002926 270 TCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQV-------DGNLQYRCPTCRGE 341 (864)
Q Consensus 270 ~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gi-------d~~~~Y~CptCr~~ 341 (864)
.+|..| .|.+|.+...+.++-.||.||.|.+|-|.+|.=- ..+...|. ..+..|+|..|-..
T Consensus 124 gFC~~C--------~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr--~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 124 GFCRRC--------MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR--HELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccC--------CccccCCcccCCCCeeEEeccCCCceehhhhhcc--cccccCCccCCCCCccCceEEEccCCCCh
Confidence 356666 4888877433445567999999999999999542 11222221 13669999999864
No 47
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=92.90 E-value=0.055 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=20.7
Q ss_pred cccccccccCccccccCCCCCcCCCCC
Q 002926 173 KYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 173 aYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
+||+.||.|++.. ++.+.|.|+.|
T Consensus 1 g~H~~CL~Ppl~~---~P~g~W~Cp~C 24 (148)
T cd04718 1 GFHLCCLRPPLKE---VPEGDWICPFC 24 (148)
T ss_pred CcccccCCCCCCC---CCCCCcCCCCC
Confidence 5999999998864 45899999999
No 48
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.15 E-value=0.029 Score=43.68 Aligned_cols=33 Identities=33% Similarity=0.822 Sum_probs=18.7
Q ss_pred CceeecCCCCCcccccccCCCCcCCCCC-CccccCC
Q 002926 212 NKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKH 246 (864)
Q Consensus 212 ~~LL~Cd~C~raYH~~CL~Ppl~svP~g-~W~CP~C 246 (864)
+.|++|+.|....|..|.+. ..++.+ .|+|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv--~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV--SEVPDGDDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH
T ss_pred CceEEeCCCCCcCChhhCCc--ccCCCCCcEECCcC
Confidence 47999999999999999994 444444 6999775
No 49
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=92.13 E-value=0.04 Score=71.34 Aligned_cols=55 Identities=31% Similarity=0.729 Sum_probs=44.7
Q ss_pred cCCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 138 QGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 138 ~~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
...+.....|.+|...+ ..+.|+.|+.|.+.||..|+.+... .++.+.|+|+.|.
T Consensus 1102 w~~s~~~~~c~~cr~k~-----~~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1102 WDRSAVNALCKVCRRKK-----QDEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCR 1156 (1404)
T ss_pred hccccchhhhhhhhhcc-----cchhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccc
Confidence 34556777999999754 2358999999999999999999764 3457899999997
No 50
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=89.87 E-value=0.071 Score=41.54 Aligned_cols=33 Identities=24% Similarity=0.672 Sum_probs=18.6
Q ss_pred ceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926 163 RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 163 eLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
+||.|+.|.-..|..|.+....+. ...|.|..|
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~----~~~W~C~~C 35 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPD----GDDWLCDRC 35 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--S----S-----HHH
T ss_pred ceEEeCCCCCcCChhhCCcccCCC----CCcEECCcC
Confidence 899999999999999999865432 236999876
No 51
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=87.92 E-value=0.8 Score=44.82 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=31.0
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccce
Q 002926 800 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 845 (864)
Q Consensus 800 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~ 845 (864)
|.+-||+||---|.+++-.+-|+|+-= .+-.++.|.||||...+|
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-EEEE
T ss_pred CCcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcccee
Confidence 678899999999954444489988773 455579999999987644
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.63 E-value=0.33 Score=56.07 Aligned_cols=53 Identities=23% Similarity=0.617 Sum_probs=36.9
Q ss_pred CCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccc
Q 002926 139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204 (864)
Q Consensus 139 ~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~V 204 (864)
......+.|.+|...- +..-..|.=..|..+||-.|+..|.. -.||-|++|..
T Consensus 170 ~~~tELPTCpVCLERM----D~s~~gi~t~~c~Hsfh~~cl~~w~~---------~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERM----DSSTTGILTILCNHSFHCSCLMKWWD---------SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhc----CccccceeeeecccccchHHHhhccc---------CcChhhhhhcC
Confidence 3445678999999643 33346677789999999999997543 34666655543
No 53
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=87.21 E-value=0.41 Score=55.03 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=5.1
Q ss_pred CCcccccccc
Q 002926 170 CGKKYHRNCL 179 (864)
Q Consensus 170 C~raYH~~CL 179 (864)
|+++||+.|.
T Consensus 352 ~GkayHp~CF 361 (468)
T KOG1701|consen 352 LGKAYHPGCF 361 (468)
T ss_pred cccccCCCce
Confidence 3455665443
No 54
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=85.39 E-value=0.28 Score=43.20 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=21.5
Q ss_pred ccccccccccccCcccCCceeecC--CCCccccccccccCcccccc----CCCCCcCCCCCc
Q 002926 145 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDL----FHWSSWKCPSCR 200 (864)
Q Consensus 145 d~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~----v~~~~W~CpeCk 200 (864)
..|.||...-.. ......+.|. .|+..||..||..|....+. +..-.+.||.|.
T Consensus 3 ~~C~IC~~~~~~--~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~ 62 (70)
T PF11793_consen 3 LECGICYSYRLD--DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCS 62 (70)
T ss_dssp -S-SSS--SS-T--T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-
T ss_pred CCCCcCCcEecC--CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCC
Confidence 479999975321 1122468997 99999999999988653221 112245688774
No 55
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=84.56 E-value=1 Score=55.56 Aligned_cols=65 Identities=34% Similarity=0.937 Sum_probs=49.6
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc----------cccccccCCCC
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR----------ICEICRRTGDP 211 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk----------~C~VCgk~gd~ 211 (864)
.....|.||... ......+-.|..|...||+.|+.-|...+.......|+||.|. .| .|++-.++
T Consensus 189 ~~~yeCmIC~e~----I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~C-~CGk~~nP 263 (950)
T KOG1952|consen 189 NRKYECMICTER----IKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYLC-FCGKVKNP 263 (950)
T ss_pred cCceEEEEeeee----ccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccce-ecCcccCC
Confidence 355689999863 2334488999999999999999999876554445799999997 46 67775554
No 56
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=83.68 E-value=0.98 Score=42.13 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=46.2
Q ss_pred cccccccccccCcccCCceeecCCCCccccccccccCcccc------------ccCCCCCcCCCCCccccccccCCCCCc
Q 002926 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR------------DLFHWSSWKCPSCRICEICRRTGDPNK 213 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~------------~~v~~~~W~CpeCk~C~VCgk~gd~~~ 213 (864)
.|.+|...| ..+.-..-+++.|..|.-..+... ..+....|. ..|.+|+... .-
T Consensus 2 ~C~lC~~~~--------Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~----~~C~iC~~~~--G~ 67 (110)
T PF13832_consen 2 SCVLCPKRG--------GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK----LKCSICGKSG--GA 67 (110)
T ss_pred ccEeCCCCC--------CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC----CcCcCCCCCC--ce
Confidence 588998754 233344468899999987643210 001111111 2678888763 26
Q ss_pred eeecCC--CCCcccccccCC
Q 002926 214 FMFCRR--CDAAYHCYCQHP 231 (864)
Q Consensus 214 LL~Cd~--C~raYH~~CL~P 231 (864)
.+.|.. |..+||..|...
T Consensus 68 ~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 68 CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred eEEcCCCCCCcCCCHHHHHH
Confidence 899998 999999999874
No 57
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=83.17 E-value=0.83 Score=53.00 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=30.0
Q ss_pred cCCCCCccccccccCCCC---CceeecCCCCCcccccccCC
Q 002926 194 WKCPSCRICEICRRTGDP---NKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 194 W~CpeCk~C~VCgk~gd~---~~LL~Cd~C~raYH~~CL~P 231 (864)
=+|..| .|.+|.+-... -.++.|+.|+.|-|..|.--
T Consensus 124 gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 124 GFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhcc
Confidence 469999 99999875332 25899999999999999863
No 58
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=81.78 E-value=0.57 Score=37.01 Aligned_cols=43 Identities=37% Similarity=0.864 Sum_probs=28.7
Q ss_pred ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339 (864)
Q Consensus 284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr 339 (864)
.|+||...+.+.+ .++... |...||..|+. + |.+. .+.||.||
T Consensus 2 ~C~IC~~~~~~~~--~~~~l~-C~H~fh~~Ci~---~-~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGE--KVVKLP-CGHVFHRSCIK---E-WLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTS--CEEEET-TSEEEEHHHHH---H-HHHH------SSB-TTTH
T ss_pred CCcCCChhhcCCC--eEEEcc-CCCeeCHHHHH---H-HHHh------CCcCCccC
Confidence 4889998886633 345555 99999999954 2 3221 35999996
No 59
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=80.98 E-value=0.39 Score=37.95 Aligned_cols=43 Identities=28% Similarity=0.890 Sum_probs=28.5
Q ss_pred ccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926 145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 145 d~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
+.|.||...-. ..+.++... |+..||..|+..+... ...||.|
T Consensus 1 d~C~IC~~~~~----~~~~~~~l~-C~H~fh~~Ci~~~~~~-------~~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFE----DGEKVVKLP-CGHVFHRSCIKEWLKR-------NNSCPVC 43 (44)
T ss_dssp -CETTTTCBHH----TTSCEEEET-TSEEEEHHHHHHHHHH-------SSB-TTT
T ss_pred CCCcCCChhhc----CCCeEEEcc-CCCeeCHHHHHHHHHh-------CCcCCcc
Confidence 36899987532 123555555 9999999999987753 1377776
No 60
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=79.28 E-value=1.6 Score=38.58 Aligned_cols=56 Identities=25% Similarity=0.565 Sum_probs=21.6
Q ss_pred ccccccccccCCCCCCceecc--CCCCccccccCCCChHHHhhhccCC-C---CceeCCCCCCCC
Q 002926 284 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDG-N---LQYRCPTCRGEC 342 (864)
Q Consensus 284 yCpVC~K~Y~D~dg~~MVqCD--~C~~WfH~eCd~l~dE~y~~~gid~-~---~~Y~CptCr~~~ 342 (864)
.|+||+....+.+..+.+.|+ .|..-||..|+. +.|......+ . ..-.||.|+...
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~---~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS---EWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGH---HHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH---HHHHHcccCCeeecccccCCcCCCCee
Confidence 588888765544444567787 899999999954 3333322221 1 234699998653
No 61
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=77.91 E-value=0.83 Score=42.26 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=31.2
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|..|..+|++-.++.+. |...||..|+..-+.... ..=.||.|+
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~-~~~~CPmCR 78 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQS-SKGQCPMCR 78 (85)
T ss_pred CCCCccCCCCCCceeecc-CccHHHHHHHHHHHcccc-CCCCCCCcC
Confidence 355677788766666555 999999999986554322 234788875
No 62
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=77.39 E-value=1.8 Score=40.42 Aligned_cols=29 Identities=24% Similarity=0.577 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCCceeccC--CCCccccccCCC
Q 002926 284 YCPVCLKVYRDSESTPMVCCDV--CQRWVHCQCDGI 317 (864)
Q Consensus 284 yCpVC~K~Y~D~dg~~MVqCD~--C~~WfH~eCd~l 317 (864)
.|.+|.+. .+-.|+|.. |..+||+.|...
T Consensus 57 ~C~iC~~~-----~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 57 KCSICGKS-----GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCcCCCCC-----CceeEEcCCCCCCcCCCHHHHHH
Confidence 47777654 566899998 999999999763
No 63
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=76.66 E-value=1.4 Score=37.60 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=26.4
Q ss_pred cccccccCCC-CCceeecCCCCCcccccccCC
Q 002926 201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~P 231 (864)
.|.+|++.-. .+++++|..|+.-||..|...
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 6888888764 458999999999999999974
No 64
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.48 E-value=1.4 Score=46.07 Aligned_cols=37 Identities=30% Similarity=0.859 Sum_probs=29.2
Q ss_pred CCCCCc----cccccccCC-----CCCceeecCCCCCcccccccCC
Q 002926 195 KCPSCR----ICEICRRTG-----DPNKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 195 ~CpeCk----~C~VCgk~g-----d~~~LL~Cd~C~raYH~~CL~P 231 (864)
.|..|. +|.+|.... +.+...+|..|...||..|...
T Consensus 144 ~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 144 SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC
Confidence 577776 789998642 2236899999999999999983
No 65
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=75.65 E-value=8.2 Score=31.51 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=35.4
Q ss_pred ccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCcee
Q 002926 804 IGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQG 851 (864)
Q Consensus 804 ~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~~~~~~~~~gk~~ 851 (864)
|||+|.|.. .++. ..|++.+| -.|. |.|.++||..+++--|-=.
T Consensus 2 lG~~V~v~~-~~~~-~~G~~~gId~~G~--L~v~~~~g~~~~i~sGdv~ 46 (48)
T PF02237_consen 2 LGQEVRVET-GDGE-IEGIAEGIDDDGA--LLVRTEDGSIRTISSGDVS 46 (48)
T ss_dssp TTSEEEEEE-TSCE-EEEEEEEEETTSE--EEEEETTEEEEEESSSEEE
T ss_pred CCCEEEEEE-CCeE-EEEEEEEECCCCE--EEEEECCCCEEEEEEEEEE
Confidence 799999999 4444 49999999 6677 9999999988877666433
No 66
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=71.65 E-value=3 Score=52.55 Aligned_cols=46 Identities=37% Similarity=1.011 Sum_probs=40.7
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|..|.+...+ .++.|+.|...||.+|..++++.++.+.|.|+.|.
T Consensus 157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (904)
T KOG1246|consen 157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCI 202 (904)
T ss_pred hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccc
Confidence 57778877766 54599999999999999999999999999999987
No 67
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.70 E-value=2.5 Score=47.94 Aligned_cols=35 Identities=26% Similarity=0.771 Sum_probs=26.0
Q ss_pred ccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926 145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 184 (864)
Q Consensus 145 d~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~ 184 (864)
+.|.||...= ...+.|.. =.|...||..|+++|..
T Consensus 230 ~~CaIClEdY----~~GdklRi-LPC~H~FH~~CIDpWL~ 264 (348)
T KOG4628|consen 230 DTCAICLEDY----EKGDKLRI-LPCSHKFHVNCIDPWLT 264 (348)
T ss_pred ceEEEeeccc----ccCCeeeE-ecCCCchhhccchhhHh
Confidence 6999999642 22223333 78999999999999875
No 68
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=69.63 E-value=9.2 Score=33.30 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=26.2
Q ss_pred ccceEEEEecC---CCceeeeeeEEeecCeeEEEEEecC
Q 002926 804 IGKRVEVHQQS---DNSWHKGVVTDTVEGTSTLSITLDD 839 (864)
Q Consensus 804 ~~krvev~~~s---d~~w~~g~v~~~~~~~~~~~v~~d~ 839 (864)
.|-+|||..-. .++|..|+|....... ++.|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 68899998755 5699999999998884 59999953
No 69
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.46 E-value=2.9 Score=35.78 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=27.1
Q ss_pred cccccccccccccCcccCCceeecCCCCccccccccccC
Q 002926 144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNW 182 (864)
Q Consensus 144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~ 182 (864)
...|.+|+..- ...++++.|..|+..||+.|....
T Consensus 5 ~~~C~~Cg~~~----~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKF----KDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcc----cCCCCEEECCCCCCcccHHHHhhC
Confidence 34799998642 223499999999999999999753
No 70
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=64.49 E-value=3.3 Score=46.98 Aligned_cols=39 Identities=26% Similarity=0.691 Sum_probs=31.1
Q ss_pred CceeccCCCCcccccc--CCCChHHHhhhccCCCCceeCCCCCCCC
Q 002926 299 PMVCCDVCQRWVHCQC--DGISDEKYLQFQVDGNLQYRCPTCRGEC 342 (864)
Q Consensus 299 ~MVqCD~C~~WfH~eC--d~l~dE~y~~~gid~~~~Y~CptCr~~~ 342 (864)
.|++|+.|..|||.+| .++..+. .+....|+|..|....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e-----~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKE-----APKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhccccccccccccccccCchhhc-----CCccccccccccchhh
Confidence 5899999999999999 8875432 4567799999997543
No 71
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=63.62 E-value=4.8 Score=45.16 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=22.4
Q ss_pred cccccccCCCC------CceeecCCCCCccc-ccccCC
Q 002926 201 ICEICRRTGDP------NKFMFCRRCDAAYH-CYCQHP 231 (864)
Q Consensus 201 ~C~VCgk~gd~------~~LL~Cd~C~raYH-~~CL~P 231 (864)
+| .|..+.++ ..|++|..|.-||| ..|++.
T Consensus 130 ~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 130 FC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred eE-EecCCCCCccccccceeeeEEeccchhcccccCcc
Confidence 44 56655433 25999999999999 888883
No 72
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=62.54 E-value=7.3 Score=34.20 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.8
Q ss_pred eeeeEEeecCeeEEEEEecCCcccceecC
Q 002926 820 KGVVTDTVEGTSTLSITLDDSRVKTLELG 848 (864)
Q Consensus 820 ~g~v~~~~~~~~~~~v~~d~~~~~~~~~g 848 (864)
.|+|+.|--.+ ++|+||||+.-+|-.+
T Consensus 6 eG~I~~id~~~--~titLdDGksy~lp~e 32 (61)
T PF07076_consen 6 EGTIKSIDPET--MTITLDDGKSYKLPEE 32 (61)
T ss_pred eEEEEEEcCCc--eEEEecCCCEEECCCc
Confidence 69999998888 9999999998766443
No 73
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=62.28 E-value=6.7 Score=47.69 Aligned_cols=81 Identities=22% Similarity=0.524 Sum_probs=52.9
Q ss_pred cccccccccccCcccCCceeecCCCCccccccccccCcccccc------------------CC-CCCc---CCCCCc-cc
Q 002926 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL------------------FH-WSSW---KCPSCR-IC 202 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~------------------v~-~~~W---~CpeCk-~C 202 (864)
+|.+|.-.. .-.-+-|+.|+..+|..|........+. .. ..-| +|..|. +|
T Consensus 46 ~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c 119 (634)
T KOG1169|consen 46 VCCVCLWSE------MAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSC 119 (634)
T ss_pred hhhhhhhcc------cccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccc
Confidence 888998622 1256889999999999998775432111 00 1122 355553 55
Q ss_pred cccccCCCCCceeecCCCCCcccccccCCCCc
Q 002926 203 EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK 234 (864)
Q Consensus 203 ~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~ 234 (864)
.+|+.... ..++|+-|++--|..|+....+
T Consensus 120 ~~~~~~~~--~g~~C~~C~~~vh~~C~~~~~~ 149 (634)
T KOG1169|consen 120 GSCGVGIK--QGLCCDWCGRTVHERCVRRADP 149 (634)
T ss_pred cchhhccc--CceeeccccchHHHHHHhhcCc
Confidence 55554432 4799999999999999995443
No 74
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=61.60 E-value=2.4 Score=48.40 Aligned_cols=56 Identities=32% Similarity=0.714 Sum_probs=34.2
Q ss_pred CCcccccccccccccc-cC---cccCCceeec-CCCCccccccccccCccccccCCCCCcCCCCCccccccccC
Q 002926 140 QSNTNVMCRLCFVGEN-EG---CERARRMLSC-KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 208 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~-~g---s~~~eeLL~C-d~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~ 208 (864)
..+.+..|.+|-++-- .+ ..+..++--= -.||.-+|+.||..|.+.. ..|.+|+.+
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-------------QTCPICr~p 343 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-------------QTCPICRRP 343 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-------------cCCCcccCc
Confidence 3677889999997521 11 0000011111 1699999999999876532 367788876
No 75
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=61.26 E-value=3 Score=37.36 Aligned_cols=28 Identities=29% Similarity=0.897 Sum_probs=23.9
Q ss_pred cccccccC-CCCCceeecC--CCCCcccccccCC
Q 002926 201 ICEICRRT-GDPNKFMFCR--RCDAAYHCYCQHP 231 (864)
Q Consensus 201 ~C~VCgk~-gd~~~LL~Cd--~C~raYH~~CL~P 231 (864)
.|.+|++. | -.+.|. .|...||..|...
T Consensus 38 ~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 38 KCSICKKKGG---ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCcCCCCCCC---eEEEEeCCCCCcEEChHHHcc
Confidence 78888888 6 678888 4999999999985
No 76
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=59.53 E-value=2.2 Score=51.67 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=56.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCccc-CCCCCCCCCCCcccccc----CccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH-SCGSNVPGNGLSVRWFL----GYTCCDAC 275 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~-~CG~~~pgk~ls~rW~~----~~~lC~~C 275 (864)
+|.+|.. ......+.|+.|+..+|..|..+.....+ |..|. .+... ....-.+.|.. ...+|..|
T Consensus 46 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~s~~~--------~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~c~~c 115 (634)
T KOG1169|consen 46 VCCVCLW-SEMAPSVDCDVDGGVSHEECVSGAASDCP--------LLVLLGFENQR-HKTDGDHVWRPKHLWKPAYCFVC 115 (634)
T ss_pred hhhhhhh-cccccccceeccccchhhhhhcccccchH--------HHHHHHhhhhh-hhccCceeccCCCCCCCceEEec
Confidence 5667766 22335789999999999999996543221 11111 11110 00111222322 12344444
Q ss_pred ccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHH
Q 002926 276 GRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEK 321 (864)
Q Consensus 276 ~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~ 321 (864)
. ++|.+|.-. ..+.++|+.|..-+|..|.....+.
T Consensus 116 ~------~~c~~~~~~-----~~~g~~C~~C~~~vh~~C~~~~~~~ 150 (634)
T KOG1169|consen 116 P------KSCGSCGVG-----IKQGLCCDWCGRTVHERCVRRADPE 150 (634)
T ss_pred c------ccccchhhc-----ccCceeeccccchHHHHHHhhcCcc
Confidence 3 345444422 3567999999999999998865554
No 77
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=58.77 E-value=8.5 Score=31.35 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=25.2
Q ss_pred cccccccccccccCCCCCCceeccCCCCccccccCCC
Q 002926 281 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317 (864)
Q Consensus 281 KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l 317 (864)
+..+|.+|.+.... .....+.|..|...+|..|...
T Consensus 10 ~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhhh
Confidence 34567777776533 4556788999999999999874
No 78
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=57.91 E-value=9.6 Score=46.03 Aligned_cols=32 Identities=34% Similarity=0.770 Sum_probs=26.7
Q ss_pred CCCcCCCCCc---------cccccccCCCCCceeecCCCCCccc
Q 002926 191 WSSWKCPSCR---------ICEICRRTGDPNKFMFCRRCDAAYH 225 (864)
Q Consensus 191 ~~~W~CpeCk---------~C~VCgk~gd~~~LL~Cd~C~raYH 225 (864)
...--|+.|+ .|..|+..+ +.+.|+.|+.-++
T Consensus 51 ~~~~pc~~c~gkG~V~v~~~c~~c~G~g---kv~~c~~cG~~~~ 91 (715)
T COG1107 51 SFEIPCPKCRGKGTVTVYDTCPECGGTG---KVLTCDICGDIIV 91 (715)
T ss_pred cCCCCCCeeccceeEEEEeecccCCCce---eEEeeccccceec
Confidence 3455799998 799999888 8999999998776
No 79
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=57.67 E-value=3.4 Score=36.61 Aligned_cols=50 Identities=24% Similarity=0.730 Sum_probs=28.8
Q ss_pred cccccccccccccCc-----ccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 144 NVMCRLCFVGENEGC-----ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 144 dd~C~vC~~gG~~gs-----~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
++.|.||...-.... ...+-.+.=..|+..||..||..|+.. ...||-|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-------NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-------SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-------CCcCCCCC
Confidence 446999986431110 111122222469999999999987743 23677773
No 80
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=56.75 E-value=23 Score=31.92 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=36.9
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEE-ecCCcccceecCceeeEeeecc
Q 002926 800 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSIT-LDDSRVKTLELGKQGVRFVPQK 858 (864)
Q Consensus 800 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~-~d~~~~~~~~~gk~~vr~~~~~ 858 (864)
-...+|.-+=+-...|+.|+-|+|+....... +.|. +|-|.++++.. ..+|.+|..
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I~~~~~~~~-~~V~~iD~G~~~~v~~--~~l~~l~~~ 106 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVITVDIDENQ-YKVFLIDYGNTEKVSA--SDLRPLPPE 106 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEEEEEECTTE-EEEEETTTTEEEEEEG--GGEEE--HH
T ss_pred cccccCCEEEEEEecCCceeeEEEEEecccce-eEEEEEecCceEEEcH--HHhhhhCHH
Confidence 34557777777788899999999944444332 5554 58899988654 468888743
No 81
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.55 E-value=7.9 Score=43.71 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=31.2
Q ss_pred cccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926 281 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339 (864)
Q Consensus 281 KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr 339 (864)
..++|..|... ..+..-++|..|...|-.+|+-...+- --.|+.|.
T Consensus 329 ~~~~Cf~C~~~---~~~~~~y~C~~Ck~~FCldCDv~iHes----------Lh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGE---LLSSGRYRCESCKNVFCLDCDVFIHES----------LHNCPGCE 374 (378)
T ss_pred CCcceeeeccc---cCCCCcEEchhccceeeccchHHHHhh----------hhcCCCcC
Confidence 34468888322 223446889999999999998743332 35789897
No 82
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=56.30 E-value=2.9 Score=50.29 Aligned_cols=46 Identities=28% Similarity=0.736 Sum_probs=33.1
Q ss_pred CCCCc----cccccccCCC-----CCceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926 196 CPSCR----ICEICRRTGD-----PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 196 CpeCk----~C~VCgk~gd-----~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
|..|. +|..|....- ......|..|..+||..|+.-. .-.||.|.+
T Consensus 504 C~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~-------s~~CPrC~R 558 (580)
T KOG1829|consen 504 CDLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK-------SPCCPRCER 558 (580)
T ss_pred chhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc-------CCCCCchHH
Confidence 88887 8999954332 2245899999999999999832 122888764
No 83
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.25 E-value=9.6 Score=45.48 Aligned_cols=54 Identities=24% Similarity=0.416 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccc
Q 002926 139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 202 (864)
Q Consensus 139 ~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C 202 (864)
...+.+.+|+-|...| ..+.|..|.+.||..|+.+..+.+. ....|.|+.|..|
T Consensus 55 ~~~N~d~~cfechlpg--------~vl~c~vc~Rs~h~~c~sp~~q~r~--~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 55 PSSNIDPFCFECHLPG--------AVLKCIVCHRSFHENCQSPDPQKRN--YSVPSDKPQPYSF 108 (588)
T ss_pred cccCCCcccccccCCc--------ceeeeehhhccccccccCcchhhcc--ccccccCCccccc
Confidence 3456778999999987 7899999999999999998766433 2467888876433
No 84
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=54.31 E-value=5.9 Score=35.50 Aligned_cols=33 Identities=18% Similarity=0.677 Sum_probs=27.1
Q ss_pred ccccccccccc-cccCcccCCceeecC--CCCccccccccccCc
Q 002926 143 TNVMCRLCFVG-ENEGCERARRMLSCK--SCGKKYHRNCLKNWA 183 (864)
Q Consensus 143 ~dd~C~vC~~g-G~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~ 183 (864)
....|.+|... | -.|.|. .|.+.||+.|.....
T Consensus 35 ~~~~C~~C~~~~G--------a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 35 RKLKCSICKKKGG--------ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred hCCCCcCCCCCCC--------eEEEEeCCCCCcEEChHHHccCC
Confidence 34589999987 6 788897 799999999997643
No 85
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=52.30 E-value=6.6 Score=42.96 Aligned_cols=58 Identities=19% Similarity=0.485 Sum_probs=30.8
Q ss_pred CcccccccCCC--CcCC---CCCCccccCCCc---ccCCCC---CCCC---CCCccccccCccccCCCcccc
Q 002926 222 AAYHCYCQHPP--HKNV---SSGPYLCPKHTK---CHSCGS---NVPG---NGLSVRWFLGYTCCDACGRLF 279 (864)
Q Consensus 222 raYH~~CL~Pp--l~sv---P~g~W~CP~C~~---C~~CG~---~~pg---k~ls~rW~~~~~lC~~C~elf 279 (864)
..||..|..=. +++. -.+..+|+.|.- |.-||. .-.+ ......|+.....|..|.+-|
T Consensus 160 H~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekPF 231 (332)
T KOG2272|consen 160 HPYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPF 231 (332)
T ss_pred CccceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCcc
Confidence 45777777632 2221 156788888753 333332 1111 112346887777787766543
No 86
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=52.16 E-value=9 Score=45.35 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=10.5
Q ss_pred ceeeeecCCCccCCC
Q 002926 725 PLRLKFRKPNLENQN 739 (864)
Q Consensus 725 ~l~~k~k~~~~~~~~ 739 (864)
-+-|.|+.|.++.-.
T Consensus 367 ~~~Lt~~NPl~~~i~ 381 (483)
T PF05502_consen 367 QFLLTFTNPLFDPIR 381 (483)
T ss_pred EEEEEecCCCCCcee
Confidence 667788888876443
No 87
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=52.03 E-value=7.1 Score=36.31 Aligned_cols=52 Identities=23% Similarity=0.627 Sum_probs=30.7
Q ss_pred cccccccccccccC-----c-ccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 144 NVMCRLCFVGENEG-----C-ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 144 dd~C~vC~~gG~~g-----s-~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
++.|.||...-+.. . +..-.|+.+. |+..||.-|+.-+.... ...=.||-|+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~----~~~~~CPmCR 78 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ----SSKGQCPMCR 78 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc----cCCCCCCCcC
Confidence 56777777532100 0 1122455555 99999999999887642 1233677663
No 88
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=51.07 E-value=27 Score=34.10 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=33.9
Q ss_pred cceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccce
Q 002926 805 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 845 (864)
Q Consensus 805 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~ 845 (864)
|.+|-.-+..||-||.|||...+ ...++.|.+++|+...+
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v 40 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEV 40 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEe
Confidence 67888899999999999999997 44469999988887654
No 89
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=50.20 E-value=6.3 Score=29.21 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=12.7
Q ss_pred cccccccCCCCCceeecCCCCCccccccc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 229 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL 229 (864)
.|.+|+.+........|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57889988766568899999999998884
No 90
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=49.43 E-value=9.8 Score=44.43 Aligned_cols=41 Identities=29% Similarity=0.602 Sum_probs=31.7
Q ss_pred CCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCCcC
Q 002926 297 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 344 (864)
Q Consensus 297 g~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~ 344 (864)
++-|++|+.|..|-|..|.+... ......|.|..|+.....
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~-------~~~p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFK-------STKPDKYVCEICTPRNKE 138 (508)
T ss_pred CceeeCCcccCcccCceeeeecC-------CCCchhceeeeecccccc
Confidence 67799999999999999988521 111348999999976544
No 91
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=47.79 E-value=12 Score=44.16 Aligned_cols=44 Identities=30% Similarity=0.602 Sum_probs=33.7
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
...+.|++|..+| .++.|+.|..++|..|.....+ ...|.|.+|
T Consensus 87 ~~~~~c~vc~~gg--------s~v~~~s~~~~~~r~c~~~~~~------~c~~~~~d~ 130 (463)
T KOG1081|consen 87 IEPSECFVCFKGG--------SLVTCKSRIQAPHRKCKPAQLE------KCSKRCTDC 130 (463)
T ss_pred CCcchhccccCCC--------ccceeccccccccccCcCccCc------ccccCCcce
Confidence 4567999999988 8999998888889999876432 345666555
No 92
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=46.93 E-value=7.5 Score=29.08 Aligned_cols=41 Identities=29% Similarity=0.879 Sum_probs=26.8
Q ss_pred ccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 147 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 147 C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
|.+|...- ...+.-..|+..||..|+..+... ....||.|+
T Consensus 2 C~iC~~~~-------~~~~~~~~C~H~~c~~C~~~~~~~------~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF-------REPVVLLPCGHVFCRSCIDKWLKS------GKNTCPLCR 42 (45)
T ss_pred CCcCchhh-------hCceEecCCCChhcHHHHHHHHHh------CcCCCCCCC
Confidence 77777532 133444569999999999875432 355677763
No 93
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.24 E-value=16 Score=38.39 Aligned_cols=36 Identities=17% Similarity=0.663 Sum_probs=26.2
Q ss_pred ccccccccccccCcc-cCCceeecCCCCcccccccccc
Q 002926 145 VMCRLCFVGENEGCE-RARRMLSCKSCGKKYHRNCLKN 181 (864)
Q Consensus 145 d~C~vC~~gG~~gs~-~~eeLL~Cd~C~raYH~~CL~p 181 (864)
.+|.+|...+. -.. .....+.|..|...||..|...
T Consensus 153 fiCe~C~~~~~-IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 153 FICEICNSDDI-IFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCccCCCCCC-CCCCCCCCeeeCCcCccccchhhcCC
Confidence 47888876542 222 2237889999999999999983
No 94
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=45.42 E-value=15 Score=45.40 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=30.5
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
-|.+|+.+-++ --+.|..|..-| ..|+....+-...-.|.||.|..
T Consensus 1119 dc~~cg~~i~~-~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH 1164 (1189)
T KOG2041|consen 1119 DCSVCGAKIDP-YDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKH 1164 (1189)
T ss_pred eeeecCCcCCc-cCCCChhhcCcC-ceeeccCCccccceEEEcccccc
Confidence 57888876654 457899997665 56776433322334799999754
No 95
>PHA02929 N1R/p28-like protein; Provisional
Probab=44.97 E-value=12 Score=40.75 Aligned_cols=42 Identities=12% Similarity=0.392 Sum_probs=25.5
Q ss_pred ccccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 184 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~ 184 (864)
.+..|.+|...-.........+..=..|+..||..|+..|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 346899998742111000001223347999999999998764
No 96
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.71 E-value=7.8 Score=45.36 Aligned_cols=94 Identities=23% Similarity=0.410 Sum_probs=51.3
Q ss_pred CcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCC--CCCCCccccc----
Q 002926 193 SWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNV--PGNGLSVRWF---- 266 (864)
Q Consensus 193 ~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~--pgk~ls~rW~---- 266 (864)
.-+|.+| .=++|+-+. .-++|..|.-..|..|..- -.|.||- -++.. ......-.|.
T Consensus 56 PTfCsHC-kDFiwGfgK---QGfQCqvC~fvvHkrChef-------VtF~CPG------adkg~dtDdpr~kHkf~~~tY 118 (683)
T KOG0696|consen 56 PTFCSHC-KDFIWGFGK---QGFQCQVCCFVVHKRCHEF-------VTFSCPG------ADKGPDTDDPRSKHKFKIHTY 118 (683)
T ss_pred Cchhhhh-hhheecccc---CceeeeEEeehhhhhhcce-------EEEECCC------CCCCCCCCCcccccceeeeec
Confidence 3457777 334555443 4578999988889888762 1233332 11110 0000111232
Q ss_pred cCccccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCC
Q 002926 267 LGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317 (864)
Q Consensus 267 ~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l 317 (864)
...+.|+.|+.+.. + .+ -+-+.|+.|..-+|..|...
T Consensus 119 ssPTFCDhCGsLLy-G--------l~-----HQGmKC~~C~mNVH~rCv~n 155 (683)
T KOG0696|consen 119 SSPTFCDHCGSLLY-G--------LI-----HQGMKCDTCDMNVHHRCVEN 155 (683)
T ss_pred CCCchhhhHHHHHH-H--------HH-----hcccccccccchHHHHHhhc
Confidence 24567777775421 0 00 01267999999999999763
No 97
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=42.39 E-value=20 Score=43.24 Aligned_cols=44 Identities=30% Similarity=0.805 Sum_probs=24.1
Q ss_pred CccccccCccccCCCccccccccc-----cccccccccCCCCCCceeccCCCC
Q 002926 261 LSVRWFLGYTCCDACGRLFVKGNY-----CPVCLKVYRDSESTPMVCCDVCQR 308 (864)
Q Consensus 261 ls~rW~~~~~lC~~C~elf~Kgny-----CpVC~K~Y~D~dg~~MVqCD~C~~ 308 (864)
+..+|+.....|..|....+ +.| =|.|.+.|....+ |.|..|.+
T Consensus 152 ld~qwhv~cfkc~~c~~vL~-gey~skdg~pyce~dy~~~fg---vkc~~c~~ 200 (670)
T KOG1044|consen 152 LDKQWHVSCFKCKSCSAVLN-GEYMSKDGVPYCEKDYQAKFG---VKCEECEK 200 (670)
T ss_pred eccceeeeeeehhhhccccc-ceeeccCCCcchhhhhhhhcC---eehHHhhh
Confidence 34567777677766664422 222 3455555655443 56666653
No 98
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=41.89 E-value=14 Score=41.51 Aligned_cols=18 Identities=22% Similarity=0.886 Sum_probs=11.6
Q ss_pred CCCCcCCCCCccccccccC
Q 002926 190 HWSSWKCPSCRICEICRRT 208 (864)
Q Consensus 190 ~~~~W~CpeCk~C~VCgk~ 208 (864)
..+++.||.|+. .||.-+
T Consensus 305 ~~gGy~CP~Ckt-kVCsLP 322 (421)
T COG5151 305 KGGGYECPVCKT-KVCSLP 322 (421)
T ss_pred ccCceeCCcccc-eeecCC
Confidence 357899999962 244433
No 99
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=41.56 E-value=3.1 Score=35.32 Aligned_cols=23 Identities=17% Similarity=0.553 Sum_probs=16.0
Q ss_pred cccccccCCCCCceeecCCCCCc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAA 223 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~ra 223 (864)
+|..|...+.-..+-+|..|++|
T Consensus 9 ~CDLCn~~~p~~~LRQCvlCGRW 31 (57)
T PF14445_consen 9 SCDLCNSSHPISELRQCVLCGRW 31 (57)
T ss_pred hHHhhcccCcHHHHHHHhhhchh
Confidence 46677777766667788888654
No 100
>PRK14637 hypothetical protein; Provisional
Probab=41.46 E-value=47 Score=33.70 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=32.5
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 002926 802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 847 (864)
Q Consensus 802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~ 847 (864)
-+||+.|+|.+...+.|.+|++.++-+++ +.+.. +|....+.+
T Consensus 95 r~~G~~V~V~l~~~~~~~~G~L~~~~d~~--v~l~~-~~~~~~i~~ 137 (151)
T PRK14637 95 IFVGETVKVWFECTGQWQVGTIAEADETC--LVLTS-DGVPVTIPY 137 (151)
T ss_pred HhCCCEEEEEECCCCcEEEEEEEEEeCCE--EEEEE-CCEEEEEEH
Confidence 47999999988667899999999998887 55554 454444444
No 101
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=41.33 E-value=5.7 Score=42.36 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=41.0
Q ss_pred cccccccccccccCCC----------CCCceeccCCCCccccccCCCC-------hHHHhhhccCCCCceeCCCCCC
Q 002926 281 KGNYCPVCLKVYRDSE----------STPMVCCDVCQRWVHCQCDGIS-------DEKYLQFQVDGNLQYRCPTCRG 340 (864)
Q Consensus 281 KgnyCpVC~K~Y~D~d----------g~~MVqCD~C~~WfH~eCd~l~-------dE~y~~~gid~~~~Y~CptCr~ 340 (864)
+...|..|++.|+|.. +.....|..|++.|-..|--.. ...-|.|...+...|.|.+|--
T Consensus 144 kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~ 220 (267)
T KOG3576|consen 144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGY 220 (267)
T ss_pred HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCC
Confidence 3446999999997652 4556789999999999995311 1122334444667899999964
No 102
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=40.95 E-value=25 Score=41.73 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=18.7
Q ss_pred ceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926 213 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248 (864)
Q Consensus 213 ~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~ 248 (864)
.|.+|..|...-...|+..- -..||||.|..
T Consensus 4 ~L~fC~~C~~irc~~c~~~E-----i~~~yCp~CL~ 34 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE-----IDSYYCPNCLF 34 (483)
T ss_pred cceecccccccCChhhcccc-----cceeECccccc
Confidence 45666666665555666532 24688888763
No 103
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=39.71 E-value=48 Score=32.71 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccccceEEEEec---CCCceeeeeeEEeecCeeEEEEEecCCc-ccceec
Q 002926 802 DAIGKRVEVHQQ---SDNSWHKGVVTDTVEGTSTLSITLDDSR-VKTLEL 847 (864)
Q Consensus 802 da~~krvev~~~---sd~~w~~g~v~~~~~~~~~~~v~~d~~~-~~~~~~ 847 (864)
.+||+.|+|... ....|..|++.+|-+++ +.++++++. .+++++
T Consensus 84 ~~iG~~v~v~~~~~~~~~~~~~G~L~~~~~~~--i~l~~~~~~~~~~~~I 131 (141)
T PF02576_consen 84 RFIGRKVKVKLKQPVNGRKEFEGKLLEVDEDE--ITLEVEGKGKKKEVEI 131 (141)
T ss_dssp HH-SEEEEEE-SS-SSS-SEEEEEEEEEETTE--EEEEEE-SS-EEEEEE
T ss_pred HhcCCeEEEEEeccCCCcEEEEEEEEEEeCCE--EEEEECCccceEEEEE
Confidence 579999999973 44578999999999998 777887763 234443
No 104
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=38.54 E-value=79 Score=32.03 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcc
Q 002926 802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 842 (864)
Q Consensus 802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~ 842 (864)
.-|||.|+... .++.=..|+|..|-...+.+.+.++||..
T Consensus 90 ~lIGk~V~~~~-~~g~~~tG~V~sV~~~~~~~~~~v~d~~~ 129 (140)
T PRK11911 90 NFIGKDIKGVS-LNGEVISGKVESVQQTTNGVMLKLKDNDS 129 (140)
T ss_pred HhhCceeEEEe-cCCCEEEEEEEEEEEcCCceEEEEEcCCE
Confidence 45999998544 45556789999887666668888877653
No 105
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=38.18 E-value=1.1e+02 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=30.2
Q ss_pred ceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 002926 806 KRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 846 (864)
Q Consensus 806 krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~ 846 (864)
+.|=|.- ...-|-+|.|...-++. +.|.+.||+..|+.
T Consensus 2 ~~vWvpD-~~egfv~g~I~~~~g~~--vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 2 KWVWVPD-PKEGFVKGEIIEEEGDK--VTVKTEDGKEVTVK 39 (42)
T ss_dssp TEEEEEE-SSSSEEEEEEEEEESSE--EEEEETTTEEEEEE
T ss_pred CEEEEeC-CcccEEEEEEEEEcCCE--EEEEECCCCEEEeC
Confidence 3444543 45689999999999999 99999999987764
No 106
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=37.04 E-value=21 Score=40.82 Aligned_cols=33 Identities=33% Similarity=0.893 Sum_probs=23.2
Q ss_pred ceeecCCCCc-cccccccccCccccccCCCCCcCCCCCc---cccccccCCC
Q 002926 163 RMLSCKSCGK-KYHRNCLKNWAQNRDLFHWSSWKCPSCR---ICEICRRTGD 210 (864)
Q Consensus 163 eLL~Cd~C~r-aYH~~CL~p~~~~~~~v~~~~W~CpeCk---~C~VCgk~gd 210 (864)
+-|.|++|++ +|-. ..+.|..|. .|+.|...+-
T Consensus 7 e~v~CdgC~k~~~t~---------------rrYkCL~C~DyDlC~sCyen~~ 43 (381)
T KOG1280|consen 7 EGVSCDGCGKTAFTF---------------RRYKCLRCSDYDLCFSCYENGA 43 (381)
T ss_pred CCceeccccccceee---------------eeeEeeeecchhHHHHHhhcCC
Confidence 6688999985 4432 445677776 7888987654
No 107
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=36.09 E-value=24 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=22.3
Q ss_pred cccccccCC--CCCceeecCCCCCcccccccCC
Q 002926 201 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 201 ~C~VCgk~g--d~~~LL~Cd~C~raYH~~CL~P 231 (864)
+|.+|++.- ....-+.|..|...+|..|+..
T Consensus 13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp B-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 566776643 3346799999999999999984
No 108
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=19 Score=41.08 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=33.1
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|.+|-+....+..|+---|...||..|++|=+..- .-+||-|.
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK 274 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCK 274 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCC
Confidence 788998876666667778899999999999755422 34577775
No 109
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=35.41 E-value=19 Score=34.35 Aligned_cols=60 Identities=32% Similarity=0.771 Sum_probs=38.7
Q ss_pred cccccccccccccCcccCCceeec------CCC---CccccccccccCccc--cccCCCCCcCCCCCc---cccccccCC
Q 002926 144 NVMCRLCFVGENEGCERARRMLSC------KSC---GKKYHRNCLKNWAQN--RDLFHWSSWKCPSCR---ICEICRRTG 209 (864)
Q Consensus 144 dd~C~vC~~gG~~gs~~~eeLL~C------d~C---~raYH~~CL~p~~~~--~~~v~~~~W~CpeCk---~C~VCgk~g 209 (864)
...|..|.... .+..+.| ..| ...|-..||...-.. .+.+....|.||.|+ .|..|.+..
T Consensus 7 g~~CHqCrqKt------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 7 GKTCHQCRQKT------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred CCCchhhcCCC------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 34788888643 1244566 566 888988998654321 123346789999998 577776543
No 110
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=34.94 E-value=11 Score=26.97 Aligned_cols=39 Identities=26% Similarity=0.853 Sum_probs=23.9
Q ss_pred ccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926 147 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 147 C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
|.+|.... ....-..|+..||..|+..+.. .....||.|
T Consensus 1 C~iC~~~~--------~~~~~~~C~H~~c~~C~~~~~~------~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL--------KDPVVLPCGHTFCRSCIRKWLK------SGNNTCPIC 39 (39)
T ss_pred CCcCccCC--------CCcEEecCCChHHHHHHHHHHH------hCcCCCCCC
Confidence 56676542 2333346999999999986543 133456654
No 111
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=34.19 E-value=28 Score=30.85 Aligned_cols=29 Identities=28% Similarity=0.757 Sum_probs=18.3
Q ss_pred eeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926 301 VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339 (864)
Q Consensus 301 VqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr 339 (864)
+.=..|...||..|+. .+... .-.||.||
T Consensus 45 i~~~~C~H~FH~~Ci~----~Wl~~------~~~CP~CR 73 (73)
T PF12678_consen 45 IVWGPCGHIFHFHCIS----QWLKQ------NNTCPLCR 73 (73)
T ss_dssp EEEETTSEEEEHHHHH----HHHTT------SSB-TTSS
T ss_pred eEecccCCCEEHHHHH----HHHhc------CCcCCCCC
Confidence 3335699999999964 22221 23999997
No 112
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=33.22 E-value=25 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=24.8
Q ss_pred ccccccccccccCCCCCCceeccCCCCccccccCCC
Q 002926 282 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317 (864)
Q Consensus 282 gnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l 317 (864)
..+|.+|.+..... ...-+.|+.|...+|..|...
T Consensus 11 ~~~C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 34677777665332 235578999999999999763
No 113
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=33.03 E-value=27 Score=24.73 Aligned_cols=9 Identities=44% Similarity=1.767 Sum_probs=6.9
Q ss_pred CCcCCCCCc
Q 002926 192 SSWKCPSCR 200 (864)
Q Consensus 192 ~~W~CpeCk 200 (864)
+.|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 469999884
No 114
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=32.85 E-value=23 Score=27.67 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred ccccccccccccCCCCCCceeccCCCCccccccCCC
Q 002926 282 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317 (864)
Q Consensus 282 gnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l 317 (864)
..+|.+|.+...... +.+.|..|...+|..|...
T Consensus 11 ~~~C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSF--QGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCC--CCcCCCCCCchHHHHHHhh
Confidence 346777776553322 3588999999999999763
No 115
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.98 E-value=29 Score=39.41 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=11.7
Q ss_pred CCCCCccccCCC--cccCCCC
Q 002926 236 VSSGPYLCPKHT--KCHSCGS 254 (864)
Q Consensus 236 vP~g~W~CP~C~--~C~~CG~ 254 (864)
.+...+.|+.|. +|.-|..
T Consensus 341 ~~~~~y~C~~Ck~~FCldCDv 361 (378)
T KOG2807|consen 341 LSSGRYRCESCKNVFCLDCDV 361 (378)
T ss_pred CCCCcEEchhccceeeccchH
Confidence 345567777774 4666753
No 116
>PF13437 HlyD_3: HlyD family secretion protein
Probab=31.55 E-value=1.2e+02 Score=27.43 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=33.0
Q ss_pred cccceEEEEec-CCCceeeeeeEEeec------CeeEEEEEecCCc-ccceec
Q 002926 803 AIGKRVEVHQQ-SDNSWHKGVVTDTVE------GTSTLSITLDDSR-VKTLEL 847 (864)
Q Consensus 803 a~~krvev~~~-sd~~w~~g~v~~~~~------~~~~~~v~~d~~~-~~~~~~ 847 (864)
..|.+|.|+.. ....+..|+|+.|.. ++-.+.+.|++.. ..+|..
T Consensus 52 ~~g~~v~v~~~~~~~~~~~g~V~~I~~~~~~~~~~~~v~~~i~~~~~~~~lrp 104 (105)
T PF13437_consen 52 DPGQKVTVRLDPGPEKTIEGKVSSISPSPDPQGGTYRVEISIDNPKDDSPLRP 104 (105)
T ss_pred eCCCEEEEEECCCCCcEEEEEEEEEeCcccCCCcEEEEEEEECCCCCCCccCC
Confidence 48999999987 434589999999944 5666777888875 444443
No 117
>PRK08330 biotin--protein ligase; Provisional
Probab=31.48 E-value=93 Score=33.10 Aligned_cols=47 Identities=36% Similarity=0.584 Sum_probs=36.9
Q ss_pred ccceEEEEecCCCce-eeeeeEEee-cCeeEEEEEecCCcccceecCceeeEe
Q 002926 804 IGKRVEVHQQSDNSW-HKGVVTDTV-EGTSTLSITLDDSRVKTLELGKQGVRF 854 (864)
Q Consensus 804 ~~krvev~~~sd~~w-~~g~v~~~~-~~~~~~~v~~d~~~~~~~~~gk~~vr~ 854 (864)
+||+|.|.. ++.- ..|++.+|- .|. |.|..+||..+++..|.=.+|+
T Consensus 187 ~g~~v~~~~--~~~~~~~G~~~gI~~~G~--L~v~~~~g~~~~~~~gev~~~~ 235 (236)
T PRK08330 187 LGKRVKIIG--DGEILVEGIAEDIDEFGA--LILRLDDGTVKKVLYGDVSLRF 235 (236)
T ss_pred cCCeEEEEE--CCcEEEEEEEEEECCCCE--EEEEECCCCEEEEEEEEEEEec
Confidence 689999986 3444 379999994 477 9999999998888887665554
No 118
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=30.83 E-value=13 Score=39.76 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=10.4
Q ss_pred ceeecCCCCccc
Q 002926 163 RMLSCKSCGKKY 174 (864)
Q Consensus 163 eLL~Cd~C~raY 174 (864)
+...|..|++.|
T Consensus 116 d~ftCrvCgK~F 127 (267)
T KOG3576|consen 116 DSFTCRVCGKKF 127 (267)
T ss_pred Ceeeeehhhhhh
Confidence 788889999888
No 119
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=30.41 E-value=1e+02 Score=27.89 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.9
Q ss_pred ccccceEEEEec--CCC-ceeeeeeEEeecCeeEEEEEec
Q 002926 802 DAIGKRVEVHQQ--SDN-SWHKGVVTDTVEGTSTLSITLD 838 (864)
Q Consensus 802 da~~krvev~~~--sd~-~w~~g~v~~~~~~~~~~~v~~d 838 (864)
..||+.|+|... .++ ....|++.+|-++. +.++++
T Consensus 22 r~~G~~v~v~~~~~~~~~~~~~G~L~~~~~~~--v~l~~~ 59 (83)
T cd01734 22 RAVGKYVHVKLYQPIDGQKEFEGTLLGVDDDT--VTLEVD 59 (83)
T ss_pred HhCCCEEEEEEEcccCCeEEEEEEEEeEeCCE--EEEEEe
Confidence 468999999764 244 57889999999988 666665
No 120
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=30.36 E-value=35 Score=41.03 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=36.4
Q ss_pred CCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCC-CCCCccccCCCccc
Q 002926 192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCH 250 (864)
Q Consensus 192 ~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~sv-P~g~W~CP~C~~C~ 250 (864)
-.|+|..| .-++ ..+.|..|.+.||..|+.|..... ....|-||.|..|.
T Consensus 59 ~d~~cfec------hlpg---~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 59 IDPFCFEC------HLPG---AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCcccccc------cCCc---ceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 45765554 5556 889999999999999999743322 24579999876544
No 121
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=30.16 E-value=78 Score=27.73 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=12.1
Q ss_pred ccccceEEEEecCCCce
Q 002926 802 DAIGKRVEVHQQSDNSW 818 (864)
Q Consensus 802 da~~krvev~~~sd~~w 818 (864)
||||-||+|. +.+..+
T Consensus 1 dAiGA~V~v~-~~~~~q 16 (71)
T PF07593_consen 1 DAIGARVTVT-ADGRTQ 16 (71)
T ss_pred CCCCeEEEEE-ECCeEE
Confidence 7999999999 444443
No 122
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=29.86 E-value=1.3e+02 Score=30.57 Aligned_cols=77 Identities=29% Similarity=0.324 Sum_probs=46.6
Q ss_pred CCCccccccccccchhhhhhhhhchhhhhhhhHHHHHHh---------ccccccceEEEEecCCCceeeeeeEEee--cC
Q 002926 761 RPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKL---------GKDAIGKRVEVHQQSDNSWHKGVVTDTV--EG 829 (864)
Q Consensus 761 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~~l---------g~da~~krvev~~~sd~~w~~g~v~~~~--~~ 829 (864)
-|..|+| ..+=++|--|=|..+.|..-|=-|..| ..--|||.|.+.. .|+.-.-|+|+.|. .|
T Consensus 44 DPl~P~D-----~tefiaQlAQfs~lEq~~~~n~~l~~l~~~~~~~~~a~slVGk~V~~~~-~~g~~~tG~V~~V~~~~g 117 (142)
T PRK09618 44 DPTNPME-----DKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSDGLTKYSELIGKEVEWEG-EDGEIVSGTVTSVKQKDG 117 (142)
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCEEEEEe-CCCCEEEEEEEEEEEcCC
Confidence 3666666 334455555544444444444444444 2456999999874 67778889999995 45
Q ss_pred eeEEEEEecCCcccce
Q 002926 830 TSTLSITLDDSRVKTL 845 (864)
Q Consensus 830 ~~~~~v~~d~~~~~~~ 845 (864)
. .-+.++||..-.|
T Consensus 118 ~--~~~~~v~G~~~~l 131 (142)
T PRK09618 118 D--YPLVLDNGTWIVA 131 (142)
T ss_pred c--EEEEEECCEEEec
Confidence 4 4455677754333
No 123
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.85 E-value=18 Score=39.63 Aligned_cols=14 Identities=14% Similarity=0.849 Sum_probs=9.6
Q ss_pred ceeecCCCCCcccc
Q 002926 213 KFMFCRRCDAAYHC 226 (864)
Q Consensus 213 ~LL~Cd~C~raYH~ 226 (864)
..+.|..|+.-||.
T Consensus 196 R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 196 RYLHCSLCGTEWRF 209 (290)
T ss_dssp EEEEETTT--EEE-
T ss_pred EEEEcCCCCCeeee
Confidence 68999999888874
No 124
>PRK14633 hypothetical protein; Provisional
Probab=29.54 E-value=98 Score=31.34 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=32.2
Q ss_pred ccccceEEEEecC---CCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 002926 802 DAIGKRVEVHQQS---DNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 847 (864)
Q Consensus 802 da~~krvev~~~s---d~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~ 847 (864)
-+||++|+|..-. +..+..|++.+|-+++ +.+.+++|....+.|
T Consensus 91 r~~G~~v~V~~~~~~~~~~~~~G~L~~v~~~~--i~l~~~~~~~~~i~~ 137 (150)
T PRK14633 91 ALVGFNVKAVTLAPVGSQTKFKGVLERVEGNN--VILNLEDGKEISFDF 137 (150)
T ss_pred HhCCCeEEEEEecccCCcEEEEEEEEEEeCCE--EEEEEcCCcEEEEEh
Confidence 4799999997633 6788999999998888 666665664434433
No 125
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.47 E-value=17 Score=40.24 Aligned_cols=42 Identities=17% Similarity=0.527 Sum_probs=26.6
Q ss_pred CCcccccccccccccccCcccCCceeec---CCCCccccccccccC
Q 002926 140 QSNTNVMCRLCFVGENEGCERARRMLSC---KSCGKKYHRNCLKNW 182 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~C---d~C~raYH~~CL~p~ 182 (864)
+..++.+|.+|+..=. .+...+.+|.= -.|+..||-.|+.-|
T Consensus 220 khl~d~vCaVCg~~~~-~s~~eegvienty~LsCnHvFHEfCIrGW 264 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQID-VSVDEEGVIENTYKLSCNHVFHEFCIRGW 264 (328)
T ss_pred CCCCcchhHhhcchhe-eecchhhhhhhheeeecccchHHHhhhhh
Confidence 4557789999986431 11112223322 279999999999864
No 126
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=28.99 E-value=88 Score=34.57 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=34.7
Q ss_pred ccceEEEEecCCCceeeeeeEEee-cCeeEEEEEecCCcccceecC
Q 002926 804 IGKRVEVHQQSDNSWHKGVVTDTV-EGTSTLSITLDDSRVKTLELG 848 (864)
Q Consensus 804 ~~krvev~~~sd~~w~~g~v~~~~-~~~~~~~v~~d~~~~~~~~~g 848 (864)
+|++|.|+. ++....|++.+|- .|. |.|..++|..+++--|
T Consensus 236 ~g~~V~v~~--~~~~~~G~~~gId~~G~--L~i~~~~G~~~~~~sG 277 (285)
T PTZ00275 236 KDKKVLIDQ--DNELIVGYLQGLLHDGS--LLLLREKNKLVRVNTG 277 (285)
T ss_pred CCCEEEEEe--CCCEEEEEEEEECCCCe--EEEEeCCCCEEEEEEE
Confidence 699999986 5678999999995 477 9999999988887766
No 127
>PF12773 DZR: Double zinc ribbon
Probab=28.93 E-value=49 Score=26.78 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.5
Q ss_pred eeecCCCCC
Q 002926 214 FMFCRRCDA 222 (864)
Q Consensus 214 LL~Cd~C~r 222 (864)
..+|..|+.
T Consensus 12 ~~fC~~CG~ 20 (50)
T PF12773_consen 12 AKFCPHCGT 20 (50)
T ss_pred ccCChhhcC
Confidence 445555544
No 128
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=28.87 E-value=35 Score=30.98 Aligned_cols=41 Identities=29% Similarity=0.650 Sum_probs=23.1
Q ss_pred CCceeccC-CCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926 298 TPMVCCDV-CQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339 (864)
Q Consensus 298 ~~MVqCD~-C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr 339 (864)
+-||-|.. =..|+|..|..+.+..+..+. ..+..|+|..=.
T Consensus 28 PAMI~cs~~~GHWvhaqCm~LsE~~L~~LS-q~n~KYfC~dH~ 69 (78)
T PF13341_consen 28 PAMIFCSRGGGHWVHAQCMDLSETMLIQLS-QENTKYFCNDHV 69 (78)
T ss_dssp --EEEE-STT-EEEETGGGT--HHHHHHHH-HSSS-B--TTTT
T ss_pred ceEEEEeCCCceEeEeecccchHHHHHHHc-cCCceEEEhhhh
Confidence 45777765 679999999998877766653 235689997643
No 129
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.53 E-value=41 Score=37.42 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=26.1
Q ss_pred cccccccccC----------CCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926 285 CPVCLKVYRD----------SESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 340 (864)
Q Consensus 285 CpVC~K~Y~D----------~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~ 340 (864)
|.+|+|.|.- ..|...+.|..|.++|=-. ..-+..+..--....|.|..|-.
T Consensus 190 C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR----SNLRAHmQTHS~~K~~qC~~C~K 251 (279)
T KOG2462|consen 190 CGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR----SNLRAHMQTHSDVKKHQCPRCGK 251 (279)
T ss_pred cccccccccchHHhhcccccccCCCCccCCcccchhcch----HHHHHHHHhhcCCccccCcchhh
Confidence 5666666532 2355567777777776322 11111111011233788888864
No 130
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=28.36 E-value=25 Score=25.94 Aligned_cols=18 Identities=44% Similarity=1.171 Sum_probs=11.1
Q ss_pred CCCcCCCCCc--------cccccccC
Q 002926 191 WSSWKCPSCR--------ICEICRRT 208 (864)
Q Consensus 191 ~~~W~CpeCk--------~C~VCgk~ 208 (864)
.+.|.|+.|. .|..|+.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~ 27 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAP 27 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--B
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCC
Confidence 4689999986 56666643
No 131
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.33 E-value=20 Score=42.06 Aligned_cols=45 Identities=24% Similarity=0.587 Sum_probs=29.6
Q ss_pred cccccccCCCCC-ceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccC
Q 002926 201 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS 251 (864)
Q Consensus 201 ~C~VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~ 251 (864)
+|.||-..-+++ ..++=-.|...||..|+.. -....||-|+.|..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~------w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMK------WWDSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhh------cccCcChhhhhhcC
Confidence 566776543333 5677888999999999983 23345666655443
No 132
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=28.25 E-value=18 Score=29.36 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=19.9
Q ss_pred ccccccCCCCCceeecC--CCCCcccccccCCCCcCCCCCCccccCC
Q 002926 202 CEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKH 246 (864)
Q Consensus 202 C~VCgk~gd~~~LL~Cd--~C~raYH~~CL~Ppl~svP~g~W~CP~C 246 (864)
|.+|+.-.- .-+.|. .|...+|..|+.......... .||.|
T Consensus 1 C~~C~~iv~--~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT--QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S--SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe--eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 556665431 236788 699999999999655544322 77775
No 133
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=28.15 E-value=20 Score=43.43 Aligned_cols=36 Identities=25% Similarity=0.657 Sum_probs=23.7
Q ss_pred ccccccccccccCccc-CCceeecCCCCcccccccccc
Q 002926 145 VMCRLCFVGENEGCER-ARRMLSCKSCGKKYHRNCLKN 181 (864)
Q Consensus 145 d~C~vC~~gG~~gs~~-~eeLL~Cd~C~raYH~~CL~p 181 (864)
.+|.+|...+ .-+.- .+....|..|+..||..|+.-
T Consensus 512 fiCe~Cq~~~-iiyPF~~~~~~rC~~C~avfH~~C~~r 548 (580)
T KOG1829|consen 512 FICELCQHND-IIYPFETRNTRRCSTCLAVFHKKCLRR 548 (580)
T ss_pred eeeeeccCCC-cccccccccceeHHHHHHHHHHHHHhc
Confidence 4566663322 12222 456688999999999999975
No 134
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=18 Score=40.09 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=48.7
Q ss_pred ccccccccccccCCCCCC-cee---ccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCCcCCCChHHHHHHhhh
Q 002926 282 GNYCPVCLKVYRDSESTP-MVC---CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWR 357 (864)
Q Consensus 282 gnyCpVC~K~Y~D~dg~~-MVq---CD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~IK~~edai~r~Wr 357 (864)
.+.|.||.+....+...+ .|. =-.|.+.||..|..- +-..+ ..-.||.|+... +++......|.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG----WcivG----KkqtCPYCKekV----dl~rmfsnpWe 291 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG----WCIVG----KKQTCPYCKEKV----DLKRMFSNPWE 291 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh----heeec----CCCCCchHHHHh----hHhhhccCccc
Confidence 346888888775433111 121 125999999999761 11111 134799998542 24555667899
Q ss_pred hhhhhcHHHHHHHH
Q 002926 358 RKDMADKDLIASLR 371 (864)
Q Consensus 358 ~re~~~~dliaslR 371 (864)
..+.....++.-+|
T Consensus 292 kph~~yg~LldwlR 305 (328)
T KOG1734|consen 292 KPHVWYGQLLDWLR 305 (328)
T ss_pred cchhHHHHHHHHHH
Confidence 88888887776655
No 135
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.59 E-value=41 Score=29.66 Aligned_cols=18 Identities=39% Similarity=1.180 Sum_probs=11.3
Q ss_pred CCcCCCCCc-----cccccccCC
Q 002926 192 SSWKCPSCR-----ICEICRRTG 209 (864)
Q Consensus 192 ~~W~CpeCk-----~C~VCgk~g 209 (864)
..|.||+|- .|..|++.+
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk~g 48 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRKLG 48 (61)
T ss_pred eEeeCCCCCceeeehhhhHHHcC
Confidence 468899883 455555444
No 136
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.57 E-value=49 Score=40.81 Aligned_cols=23 Identities=35% Similarity=0.964 Sum_probs=13.5
Q ss_pred cccccccCCCCCceeecCCCCCcc
Q 002926 201 ICEICRRTGDPNKFMFCRRCDAAY 224 (864)
Q Consensus 201 ~C~VCgk~gd~~~LL~Cd~C~raY 224 (864)
.|.-|+... +....+|..|+...
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l 25 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSL 25 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCC
Confidence 344555443 33567888887654
No 137
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.35 E-value=93 Score=33.99 Aligned_cols=89 Identities=26% Similarity=0.485 Sum_probs=46.7
Q ss_pred cccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccC-CCCceeCCCCCCCCcCCCChHHHHHHhhhhhhhhc
Q 002926 285 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVD-GNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMAD 363 (864)
Q Consensus 285 CpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid-~~~~Y~CptCr~~~~~IK~~edai~r~Wr~re~~~ 363 (864)
|.+|.-.....|...++ |-..||=.|++. +...+... -...|.|+.|..+.+.--++-.-+. ..+
T Consensus 53 C~LC~t~La~gdt~RLv----CyhlfHW~Clne---raA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva-------~aL 118 (299)
T KOG3970|consen 53 CRLCNTPLASGDTTRLV----CYHLFHWKCLNE---RAANLPANTAPAGYQCPCCSQEIFPPINLVSPVA-------EAL 118 (299)
T ss_pred CceeCCccccCcceeeh----hhhhHHHHHhhH---HHhhCCCcCCCCcccCCCCCCccCCCccccchhH-------HHH
Confidence 44555544444443333 778899999663 32232111 1347999999987665322111110 011
Q ss_pred H---HHHHHHHHhcCCCCccccccCCC
Q 002926 364 K---DLIASLRAAAGLPTEDEIFSISP 387 (864)
Q Consensus 364 ~---dliaslR~aqGLp~~EEif~~~P 387 (864)
+ +...=-|+.-|||-+.|+-+..|
T Consensus 119 re~L~qvNWaRagLGLpll~E~~sp~p 145 (299)
T KOG3970|consen 119 REQLKQVNWARAGLGLPLLPELNSPVP 145 (299)
T ss_pred HHHHHhhhHHhhccCCccchhhcCCCC
Confidence 1 11222466779987777744433
No 138
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.32 E-value=2.1e+02 Score=24.90 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=26.2
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC
Q 002926 802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD 839 (864)
Q Consensus 802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~ 839 (864)
.++||+|.|.+ .++.=..|+...+-.- +-+.|+|
T Consensus 7 ~~~~~~V~V~L-k~g~~~~G~L~~~D~~---mNlvL~~ 40 (67)
T cd01726 7 AIIGRPVVVKL-NSGVDYRGILACLDGY---MNIALEQ 40 (67)
T ss_pred hhCCCeEEEEE-CCCCEEEEEEEEEccc---eeeEEee
Confidence 34999999999 5778899999988632 4566655
No 139
>PRK06955 biotin--protein ligase; Provisional
Probab=27.10 E-value=1.2e+02 Score=33.78 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=36.1
Q ss_pred cccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCceeeE
Q 002926 803 AIGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQGVR 853 (864)
Q Consensus 803 a~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~~~~~~~~~gk~~vr 853 (864)
-+|++|.|... ++.-+.|++.+| -.|. |.|..+|| .+++.-|-=.+|
T Consensus 247 ~~g~~V~v~~~-~~~~~~G~~~gId~~G~--L~v~~~~g-~~~~~sGeV~~~ 294 (300)
T PRK06955 247 YAGREVVLLED-GAELARGVAHGIDETGQ--LLLDTPAG-RQAIAAGDVSLR 294 (300)
T ss_pred cCCCeEEEEEC-CCcEEEEEEeeECCCce--EEEEeCCC-eEEEEEEEEEEe
Confidence 46999999864 567789999999 4577 99999999 567777654443
No 140
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=26.70 E-value=44 Score=41.23 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=4.5
Q ss_pred eeecCCCCc
Q 002926 164 MLSCKSCGK 172 (864)
Q Consensus 164 LL~Cd~C~r 172 (864)
|+.|-.|+.
T Consensus 1 M~~Cp~Cg~ 9 (645)
T PRK14559 1 MLICPQCQF 9 (645)
T ss_pred CCcCCCCCC
Confidence 345555543
No 141
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=19 Score=37.86 Aligned_cols=37 Identities=27% Similarity=0.825 Sum_probs=25.6
Q ss_pred ccccccccccccCcccCCceeecC--CCCccccccccccCcc
Q 002926 145 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQ 184 (864)
Q Consensus 145 d~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~ 184 (864)
.-|.+|....-. +...--.|+ +|++.||.-||..|+.
T Consensus 166 ~~cgicyayqld---GTipDqtCdN~qCgkpFHqiCL~dWLR 204 (234)
T KOG3268|consen 166 GACGICYAYQLD---GTIPDQTCDNIQCGKPFHQICLTDWLR 204 (234)
T ss_pred hcccceeeeecC---CccccccccccccCCcHHHHHHHHHHH
Confidence 457777765421 122345687 8999999999998864
No 142
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=26.35 E-value=33 Score=36.33 Aligned_cols=33 Identities=18% Similarity=0.660 Sum_probs=23.6
Q ss_pred ccccccccccccccCcccCCceeecCCCCccccccccccCc
Q 002926 143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 183 (864)
Q Consensus 143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~ 183 (864)
.+..|.||...-. +-+. ..|+..|+..|+..|.
T Consensus 17 ~~~~CpICld~~~-------dPVv-T~CGH~FC~~CI~~wl 49 (193)
T PLN03208 17 GDFDCNICLDQVR-------DPVV-TLCGHLFCWPCIHKWT 49 (193)
T ss_pred CccCCccCCCcCC-------CcEE-cCCCchhHHHHHHHHH
Confidence 4568999987431 2222 5799999999998764
No 143
>PRK14639 hypothetical protein; Provisional
Probab=26.30 E-value=1.3e+02 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.347 Sum_probs=32.4
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceec
Q 002926 802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLEL 847 (864)
Q Consensus 802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~~~~~~~~~ 847 (864)
.++|+.|.|... +..+.+|++.+|-+++ +.+++ .++...++.|
T Consensus 85 r~~G~~v~v~l~-~~~~~~G~L~~~~~~~--i~l~~~~~~~~~~i~~ 128 (140)
T PRK14639 85 KSIGELVKITTN-EKEKFEGKIVSVDDEN--ITLENLENKEKTTINF 128 (140)
T ss_pred HhCCCEEEEEEC-CCcEEEEEEEEEeCCE--EEEEEccCCcEEEEEh
Confidence 579999999884 6899999999998887 66644 4555445544
No 144
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=26.14 E-value=99 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.822 Sum_probs=15.9
Q ss_pred CCCCcCCCCCc--------cccccccCCC
Q 002926 190 HWSSWKCPSCR--------ICEICRRTGD 210 (864)
Q Consensus 190 ~~~~W~CpeCk--------~C~VCgk~gd 210 (864)
..+.|.|+.|. .|+.|+....
T Consensus 61 ~pgdw~c~~c~~~n~arr~~c~~c~~s~~ 89 (280)
T KOG4198|consen 61 RPGDWNCPLCGFHNSARRLLCFRCGFSKV 89 (280)
T ss_pred CCcccccCccchhhHHHhhhcceecccCC
Confidence 35899999986 7888876543
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.99 E-value=46 Score=41.09 Aligned_cols=41 Identities=27% Similarity=0.664 Sum_probs=0.0
Q ss_pred ccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc------------cccccccCCCCCceeecCCCCC
Q 002926 159 ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDPNKFMFCRRCDA 222 (864)
Q Consensus 159 ~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk------------~C~VCgk~gd~~~LL~Cd~C~r 222 (864)
.+...++.|..|+..+. |++|. .|+.|+... .-..|..|+.
T Consensus 378 rGyap~l~C~~Cg~~~~--------------------C~~C~~~L~~h~~~~~l~Ch~CG~~~---~p~~Cp~Cgs 430 (665)
T PRK14873 378 RGYVPSLACARCRTPAR--------------------CRHCTGPLGLPSAGGTPRCRWCGRAA---PDWRCPRCGS 430 (665)
T ss_pred CCCCCeeEhhhCcCeeE--------------------CCCCCCceeEecCCCeeECCCCcCCC---cCccCCCCcC
No 146
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=25.97 E-value=45 Score=42.38 Aligned_cols=51 Identities=27% Similarity=0.732 Sum_probs=38.9
Q ss_pred CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC 199 (864)
.......|..|..+.. . ..+ .|+.|...||..|+.++... ++.+.|.|+.|
T Consensus 151 ~~~~~~~~~~~~k~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 201 (904)
T KOG1246|consen 151 EFIDYPQCNTCSKGKE----E-KLL-LCDSCDDSYHTYCLRPPLTR---VPDGDWRCPKC 201 (904)
T ss_pred ccccchhhhccccCCC----c-cce-ecccccCcccccccCCCCCc---CCcCcccCCcc
Confidence 3445567888887652 1 245 99999999999999997653 45789999999
No 147
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=25.68 E-value=40 Score=39.46 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=33.9
Q ss_pred ccccCCC-CCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926 204 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 247 (864)
Q Consensus 204 VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~ 247 (864)
.|+...+ ...++.|+.|++|-|..|++...... ...+.|..|.
T Consensus 90 ~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~ 133 (508)
T KOG1844|consen 90 DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICT 133 (508)
T ss_pred ccccccCCCceeeCCcccCcccCceeeeecCCCC-chhceeeeec
Confidence 7887777 66799999999999999999654433 4567777765
No 148
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.56 E-value=29 Score=28.27 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=7.7
Q ss_pred cCCCcccCCCCCC
Q 002926 244 PKHTKCHSCGSNV 256 (864)
Q Consensus 244 P~C~~C~~CG~~~ 256 (864)
+.|..|..|+...
T Consensus 24 ~~Cf~C~~C~~~l 36 (58)
T PF00412_consen 24 PECFKCSKCGKPL 36 (58)
T ss_dssp TTTSBETTTTCBT
T ss_pred ccccccCCCCCcc
Confidence 4455577776543
No 149
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=25.38 E-value=1.2e+02 Score=33.38 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=34.1
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 002926 803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 848 (864)
Q Consensus 803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~g 848 (864)
.||-+...-+.-|+.|+.++|..|-....+..|.|+. |-.+.+.|.
T Consensus 70 kvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 70 KVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp -TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 6899999999889999999999998644448888865 555555554
No 150
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.37 E-value=12 Score=40.43 Aligned_cols=77 Identities=21% Similarity=0.457 Sum_probs=43.3
Q ss_pred ceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCc--eeecCCCCCcccccccCCCCcCCC---
Q 002926 163 RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNK--FMFCRRCDAAYHCYCQHPPHKNVS--- 237 (864)
Q Consensus 163 eLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~--LL~Cd~C~raYH~~CL~Ppl~svP--- 237 (864)
..-.|..|--.-|+.|+--.-. ..+ ...=+=++| ..|+.+-...+ .+ .|...||+.|++.-...+|
T Consensus 20 RVNVCEhClV~nHpkCiVQSYL--qWL-~DsDY~pNC---~LC~t~La~gdt~RL---vCyhlfHW~ClneraA~lPanT 90 (299)
T KOG3970|consen 20 RVNVCEHCLVANHPKCIVQSYL--QWL-QDSDYNPNC---RLCNTPLASGDTTRL---VCYHLFHWKCLNERAANLPANT 90 (299)
T ss_pred hhhHHHHHHhccCchhhHHHHH--HHH-hhcCCCCCC---ceeCCccccCcceee---hhhhhHHHHHhhHHHhhCCCcC
Confidence 3457888999999999864210 000 011122334 34444332222 22 4788999999995433333
Q ss_pred -CCCccccCCCc
Q 002926 238 -SGPYLCPKHTK 248 (864)
Q Consensus 238 -~g~W~CP~C~~ 248 (864)
...+.||.|..
T Consensus 91 APaGyqCP~Cs~ 102 (299)
T KOG3970|consen 91 APAGYQCPCCSQ 102 (299)
T ss_pred CCCcccCCCCCC
Confidence 34688998753
No 151
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.14 E-value=53 Score=34.80 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=27.5
Q ss_pred CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCC
Q 002926 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG 209 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~g 209 (864)
.......|..|+..|....+-+ -+.|..|..--|. .-.|+.++.|..|+..|
T Consensus 56 ~~~~~~~C~nCg~~GH~~~DCP--~~iC~~C~~~~H~----------------s~~C~~~~~C~~Cg~~G 107 (190)
T COG5082 56 IREENPVCFNCGQNGHLRRDCP--HSICYNCSWDGHR----------------SNHCPKPKKCYNCGETG 107 (190)
T ss_pred ccccccccchhcccCcccccCC--hhHhhhcCCCCcc----------------cccCCcccccccccccC
Confidence 3445668999998774333322 2344444222221 12355566777777666
No 152
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=25.09 E-value=57 Score=28.67 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=6.4
Q ss_pred CCcCCCCC
Q 002926 192 SSWKCPSC 199 (864)
Q Consensus 192 ~~W~CpeC 199 (864)
..|.||+|
T Consensus 24 ~~F~CPnC 31 (59)
T PRK14890 24 VKFLCPNC 31 (59)
T ss_pred CEeeCCCC
Confidence 46889988
No 153
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.51 E-value=24 Score=40.86 Aligned_cols=38 Identities=24% Similarity=0.740 Sum_probs=27.1
Q ss_pred cccccccccccccCcccCCceeecCCCCccccccccccCccc
Q 002926 144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 185 (864)
Q Consensus 144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~ 185 (864)
...|.||.++- +..++|-.=..||..||..||..|.+.
T Consensus 4 ~A~C~Ic~d~~----p~~~~l~~i~~cGhifh~~cl~qwfe~ 41 (465)
T KOG0827|consen 4 MAECHICIDGR----PNDHELGPIGTCGHIFHTTCLTQWFEG 41 (465)
T ss_pred cceeeEeccCC----ccccccccccchhhHHHHHHHHHHHcc
Confidence 34899996542 223355555679999999999987653
No 154
>PRK14644 hypothetical protein; Provisional
Probab=24.43 E-value=1.1e+02 Score=30.58 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=33.8
Q ss_pred cccceEEEEecCC---CceeeeeeEEeecCeeEEEEEecCCcccceecCceee
Q 002926 803 AIGKRVEVHQQSD---NSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGV 852 (864)
Q Consensus 803 a~~krvev~~~sd---~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~gk~~v 852 (864)
+||+.|+|..-.. -.=.+|++.+|-+++-+|.+.. .|+.+++++.++.|
T Consensus 83 ~~G~~v~V~l~~~~~~~~~~~G~L~~v~~~~i~l~~~~-k~~~~~i~~~~~~i 134 (136)
T PRK14644 83 HIGEIIDVSLNKEVNKTDFITGELLENNPETITLKWNC-KGQFRKVEINKENI 134 (136)
T ss_pred hCCCeEEEEEccCcCCeEEEEEEEEEEeCCEEEEEEec-CCcEEEEEECHHHh
Confidence 5899999986433 1345699999999884444333 47778888876543
No 155
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.17 E-value=43 Score=36.81 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=16.0
Q ss_pred ccccccccccccc---cCccc--CCceeecCCCCccccc
Q 002926 143 TNVMCRLCFVGEN---EGCER--ARRMLSCKSCGKKYHR 176 (864)
Q Consensus 143 ~dd~C~vC~~gG~---~gs~~--~eeLL~Cd~C~raYH~ 176 (864)
...+|.+|++.-. -..+. ....+.|..|+..+|.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE-
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee
Confidence 3469999997421 11111 3489999999988873
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.06 E-value=59 Score=40.71 Aligned_cols=40 Identities=25% Similarity=0.635 Sum_probs=0.0
Q ss_pred cCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc------------cccccccCCCCCceeecCCCC
Q 002926 160 RARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDPNKFMFCRRCD 221 (864)
Q Consensus 160 ~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk------------~C~VCgk~gd~~~LL~Cd~C~ 221 (864)
+...++.|..| .....||+|. .|+.|+.... .-..|..|+
T Consensus 431 Gys~~l~C~~C--------------------g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~--~p~~Cp~Cg 482 (730)
T COG1198 431 GYAPLLLCRDC--------------------GYIAECPNCDSPLTLHKATGQLRCHYCGYQEP--IPQSCPECG 482 (730)
T ss_pred CccceeecccC--------------------CCcccCCCCCcceEEecCCCeeEeCCCCCCCC--CCCCCCCCC
No 157
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.00 E-value=23 Score=29.28 Aligned_cols=36 Identities=25% Similarity=0.796 Sum_probs=21.6
Q ss_pred cccccccccccCcccCCcee-ecC--CCCccccccccccCccc
Q 002926 146 MCRLCFVGENEGCERARRML-SCK--SCGKKYHRNCLKNWAQN 185 (864)
Q Consensus 146 ~C~vC~~gG~~gs~~~eeLL-~Cd--~C~raYH~~CL~p~~~~ 185 (864)
+|.||...+. ..+.|+ -|. +--+.+|..||..|...
T Consensus 1 ~CrIC~~~~~----~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~ 39 (49)
T smart00744 1 ICRICHDEGD----EGDPLVSPCRCKGSLKYVHQECLERWINE 39 (49)
T ss_pred CccCCCCCCC----CCCeeEeccccCCchhHHHHHHHHHHHHH
Confidence 5889987221 112333 232 22378999999998754
No 158
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=23.27 E-value=2e+02 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=29.8
Q ss_pred cccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCC
Q 002926 803 AIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDS 840 (864)
Q Consensus 803 a~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~~ 840 (864)
.||-+|-+.. .++.|+.++|.++- .|.-.+.|-+.+=
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~ 40 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGW 40 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTS
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCC
Confidence 4899999999 99999999999994 4446778887743
No 159
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.23 E-value=69 Score=36.15 Aligned_cols=15 Identities=20% Similarity=0.826 Sum_probs=11.6
Q ss_pred ceeecCCCCCccccc
Q 002926 213 KFMFCRRCDAAYHCY 227 (864)
Q Consensus 213 ~LL~Cd~C~raYH~~ 227 (864)
..+.|..|..-||..
T Consensus 209 RyL~CslC~teW~~~ 223 (305)
T TIGR01562 209 RYLSCSLCATEWHYV 223 (305)
T ss_pred eEEEcCCCCCccccc
Confidence 578888888888743
No 160
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.06 E-value=41 Score=41.88 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=31.9
Q ss_pred CCCcCCCCCc-----cccccccCCCCCceeecCCCCCcccccccCC
Q 002926 191 WSSWKCPSCR-----ICEICRRTGDPNKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 191 ~~~W~CpeCk-----~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~P 231 (864)
...|+|..|. .|.||...-.. ..+.|..|+..-|..|+..
T Consensus 766 ~~~~~c~rc~s~a~~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~s 810 (839)
T KOG0269|consen 766 TKLWQCDRCESRASAKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKS 810 (839)
T ss_pred ccceeechHHHHhhcCceeecceeee-eEeecccccccccHHHHHH
Confidence 3459999997 68899865432 5789999999999999873
No 161
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=22.92 E-value=1.9e+02 Score=29.47 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=27.9
Q ss_pred cccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCccccee
Q 002926 801 KDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLE 846 (864)
Q Consensus 801 ~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~~~~~~~~ 846 (864)
.--|||.|++ .|+. ..|+|..|. .|. ....++||..-.|.
T Consensus 93 ~slIGk~V~~---~~~~-~~G~V~sV~~~~~~--~~~~~~dg~~v~l~ 134 (140)
T PRK06009 93 EGLIGRTVTS---ADGS-ITGVVKSVTVYSDG--VIATLEDGKKVLLG 134 (140)
T ss_pred HHhcCCEEEe---cCCc-EEEEEEEEEEeCCc--eEEEEECCEEEEeC
Confidence 3469999987 3443 688998885 344 67788888765554
No 162
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=28 Score=32.12 Aligned_cols=68 Identities=25% Similarity=0.485 Sum_probs=42.4
Q ss_pred CccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926 261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 340 (864)
Q Consensus 261 ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~ 340 (864)
..|.|..+-..|..|+-.|. -.||-|.-. .|.-++|-- .|...||..|.-. + ...+...=.||.||.
T Consensus 12 a~wtW~~~~e~CGiCRm~Fd--g~Cp~Ck~P---gDdCPLv~G-~C~h~fh~hCI~~----w---l~~~tsq~~CPmcRq 78 (84)
T KOG1493|consen 12 AWWTWDAPDETCGICRMPFD--GCCPDCKLP---GDDCPLVWG-YCLHAFHAHCILK----W---LNTPTSQGQCPMCRQ 78 (84)
T ss_pred EEEEEcCCCCccceEecccC--CcCCCCcCC---CCCCccHHH-HHHHHHHHHHHHH----H---hcCccccccCCcchh
Confidence 35678777778888876552 247777643 333344433 7889999999541 1 112233568999986
Q ss_pred C
Q 002926 341 E 341 (864)
Q Consensus 341 ~ 341 (864)
.
T Consensus 79 ~ 79 (84)
T KOG1493|consen 79 T 79 (84)
T ss_pred e
Confidence 4
No 163
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=22.64 E-value=41 Score=32.22 Aligned_cols=36 Identities=19% Similarity=0.437 Sum_probs=26.9
Q ss_pred cccccccccccccccCcccCCceeecCCCCccccccccc
Q 002926 142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLK 180 (864)
Q Consensus 142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~ 180 (864)
..-+.|.+|+..| +....+.|.|..|+..|+..=++
T Consensus 33 va~daCeiC~~~G---Y~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 33 VAFDACEICGPKG---YYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEEEeccccCCCc---eEEECCEEEEecCCCEEehhhcc
Confidence 3457899996543 55666899999999999875444
No 164
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=21.98 E-value=48 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=22.5
Q ss_pred cccccccCCCC--CceeecCCCCCcccccccCC
Q 002926 201 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHP 231 (864)
Q Consensus 201 ~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~P 231 (864)
+|.+|++.-.. ..-+.|..|....|..|..-
T Consensus 13 ~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 13 FCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred ChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 46666654322 35688999999999999873
No 165
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.93 E-value=57 Score=25.50 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=14.5
Q ss_pred cccccccccCC-----CCCCceeccCCCCccc
Q 002926 285 CPVCLKVYRDS-----ESTPMVCCDVCQRWVH 311 (864)
Q Consensus 285 CpVC~K~Y~D~-----dg~~MVqCD~C~~WfH 311 (864)
|+-|...|.=. ..+..++|..|..-|+
T Consensus 5 Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 5 CPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred CCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 55555555321 2345677777766553
No 166
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.33 E-value=82 Score=40.99 Aligned_cols=54 Identities=17% Similarity=0.453 Sum_probs=39.9
Q ss_pred CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200 (864)
Q Consensus 140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk 200 (864)
+.-+..+|.||++.= +-....+.++-|..|+-.-...|..+.- .++.=.||+|+
T Consensus 13 ~~~~~qiCqICGD~v-g~~~~Ge~FVAC~eC~FPVCrpCYEYEr------~eG~q~CPqCk 66 (1079)
T PLN02638 13 KHGGGQVCQICGDNV-GKTVDGEPFVACDVCAFPVCRPCYEYER------KDGNQSCPQCK 66 (1079)
T ss_pred cccCCceeeeccccc-CcCCCCCEEEEeccCCCccccchhhhhh------hcCCccCCccC
Confidence 334556999999742 2234445899999999999999997732 35788899998
No 167
>PRK14631 hypothetical protein; Provisional
Probab=21.17 E-value=2.1e+02 Score=29.90 Aligned_cols=54 Identities=9% Similarity=0.202 Sum_probs=36.3
Q ss_pred ccccceEEEEec---CCCceeeeeeEEee--cCeeEEEEEecCCcccceecCc-eeeEeeec
Q 002926 802 DAIGKRVEVHQQ---SDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGK-QGVRFVPQ 857 (864)
Q Consensus 802 da~~krvev~~~---sd~~w~~g~v~~~~--~~~~~~~v~~d~~~~~~~~~gk-~~vr~~~~ 857 (864)
-++|+.|+|... .+..=.+|++..|- +++ +.+.++++....+.|.. .++||+++
T Consensus 114 r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~--v~l~~~~~~~~~i~~~~I~ka~L~~~ 173 (174)
T PRK14631 114 GYIGQQVALRLIAAVENRRKFQAKLLAVDLENEE--IQVEVEGKHVLDIDSNNIDKANLIYQ 173 (174)
T ss_pred HhCCCeEEEEEecccCCceEEEEEEEEeecCCCE--EEEEEcCCcEEEEEhHHcceEEEeec
Confidence 479999999863 34566779999998 777 77777766544454433 33455543
No 168
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=20.96 E-value=51 Score=37.81 Aligned_cols=9 Identities=33% Similarity=0.958 Sum_probs=5.2
Q ss_pred ceeCCCCCC
Q 002926 332 QYRCPTCRG 340 (864)
Q Consensus 332 ~Y~CptCr~ 340 (864)
.-+|+.|..
T Consensus 109 ~~icp~c~~ 117 (381)
T KOG1280|consen 109 SVICPLCAA 117 (381)
T ss_pred ceeeecccc
Confidence 456666654
No 169
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=20.86 E-value=1.5e+02 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=19.9
Q ss_pred eeeeeEEeecCeeEEEEEecCCcccc
Q 002926 819 HKGVVTDTVEGTSTLSITLDDSRVKT 844 (864)
Q Consensus 819 ~~g~v~~~~~~~~~~~v~~d~~~~~~ 844 (864)
-.|+|+.+..++ .|-|+|+||..-.
T Consensus 7 ~~G~V~e~L~~~-~f~V~l~ng~~vl 31 (68)
T TIGR00008 7 MEGKVTESLPNA-MFRVELENGHEVL 31 (68)
T ss_pred EEEEEEEECCCC-EEEEEECCCCEEE
Confidence 368999998765 7999999986544
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.68 E-value=77 Score=37.78 Aligned_cols=52 Identities=23% Similarity=0.594 Sum_probs=30.5
Q ss_pred CccccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCC
Q 002926 268 GYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 342 (864)
Q Consensus 268 ~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~ 342 (864)
++..|..|+... -|+.|.-...-......+.|..|.. . ....+.||.|.+..
T Consensus 212 ~~~~C~~Cg~~~----~C~~C~~~l~~h~~~~~l~Ch~Cg~---------~----------~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGYIL----CCPNCDVSLTYHKKEGKLRCHYCGY---------Q----------EPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcCcc----CCCCCCCceEEecCCCeEEcCCCcC---------c----------CCCCCCCCCCCCCe
Confidence 445677776432 4777765443223344677887764 1 12368999998653
No 171
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=29 Score=38.32 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=39.6
Q ss_pred cccccccccccCCCCCCcee---ccCCCCccccccCCC-ChHHHhhhccCCCCceeCCCCCCC
Q 002926 283 NYCPVCLKVYRDSESTPMVC---CDVCQRWVHCQCDGI-SDEKYLQFQVDGNLQYRCPTCRGE 341 (864)
Q Consensus 283 nyCpVC~K~Y~D~dg~~MVq---CD~C~~WfH~eCd~l-~dE~y~~~gid~~~~Y~CptCr~~ 341 (864)
.+|-+|+....|+.-..||. |-.-.+|+|..|+.. -+|+- . .++-..-.|+.|+.+
T Consensus 21 R~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~--~-~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 21 RCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQ--R-GNPLQTVSCPQCQTE 80 (293)
T ss_pred eeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHh--c-CCCCceeechhhcch
Confidence 47999998876665555774 777789999999872 12321 1 344568899999965
No 172
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.14 E-value=83 Score=40.69 Aligned_cols=8 Identities=38% Similarity=0.953 Sum_probs=5.0
Q ss_pred ceeecCCC
Q 002926 213 KFMFCRRC 220 (864)
Q Consensus 213 ~LL~Cd~C 220 (864)
...+|..|
T Consensus 650 ~i~fCP~C 657 (1121)
T PRK04023 650 PVYRCPRC 657 (1121)
T ss_pred cceeCccc
Confidence 45566666
Done!