BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002927
(864 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo
sapiens GN=ADCK1 PE=2 SV=2
Length = 530
Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 14/210 (6%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F F +TPL TAS+AQVH+A L DGR V VKVQH ++ +D+ + +V +
Sbjct: 152 LFQSFDDTPLGTASLAQVHKAVLHDGRTVAVKVQHPKVRAQSSKDILLMEVLVLAVKQLF 211
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P+++F ++DE K P ELDF +E N VS L +H D K P D+
Sbjct: 212 PEFEFMWLVDEAKKNLPLELDFLNEGRNAEKVSQML----RHFDFLKVPRIHWDL----- 262
Query: 124 IQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGN 183
S+E VL++EF+DG ++ND + +E ++ ++ + + Y+ I+V+GF + DPHPGN
Sbjct: 263 --STERVLLMEFVDGGQVNDRDYMERNKIDVNEISRHLGKMYSEMIFVNGFVHCDPHPGN 320
Query: 184 FLVSKDP---PHRPILLDFGLTKKLSSSMK 210
LV K P +LLD GL + L+ +
Sbjct: 321 VLVRKHPGTGKAEIVLLDHGLYQMLTEEFR 350
>sp|Q5ZMT7|ADCK1_CHICK Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus
gallus GN=ADCK1 PE=2 SV=1
Length = 519
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 14/224 (6%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F+ F +TPL AS+AQVH+A L DGR V VK+QH ++ +D+ + ++ +
Sbjct: 142 LFVSFEDTPLGAASLAQVHKAVLQDGRTVAVKIQHPKVQAQSSKDIFLMEVLLLVVKQIF 201
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P ++F +++E K P ELDF +E N V+ L K+ + K P ++
Sbjct: 202 PDFEFMWLVEEAKKNLPLELDFLNEGRNAEKVAQML----KNFEFLKVPRIYWEL----- 252
Query: 124 IQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGN 183
S+ VL++EFM+G ++ND +E G++ ++ + + Y+ I+V+GF + DPHPGN
Sbjct: 253 --STRRVLLMEFMEGGQVNDKAYMEKNGIDVNEISRNLGKLYSEMIFVNGFVHCDPHPGN 310
Query: 184 FLVSKDP---PHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGD 224
LV K P ILLD GL + LS S + +++ A + D
Sbjct: 311 VLVKKCPDSGKAYIILLDHGLYQVLSESFRMDYCRLWLALIKAD 354
>sp|Q5M7P6|ADCK1_XENTR Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
tropicalis GN=adck1 PE=2 SV=1
Length = 523
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 18/226 (7%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F++F E PL AS+AQVHRA L DGR+V VKVQH ++ D+ + ++ +
Sbjct: 145 VFVEFEEKPLGAASLAQVHRAVLQDGRKVAVKVQHPKVQAQSARDILLMEVLLHAVKKIF 204
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
PQ++F +I+E K P ELDF +E N +SA + + + IP +
Sbjct: 205 PQFEFMWLIEEAKKNLPLELDFENEGRNAEKMSAIVSSFS-------------FLRIPRI 251
Query: 124 IQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
S++ VL++E+M+G ++ND E ++ ++ +V + + Y+ I+V GF + DPHP
Sbjct: 252 YWELSTKRVLVMEYMEGGQVNDREYMKRNQIDINQVARALGQLYSEMIFVHGFVHCDPHP 311
Query: 182 GNFLVSKDPPH---RPILLDFGLTKKLSSSMKQALAKMFFAAAEGD 224
GN LV ++P ILLD GL + L+ S + ++ A D
Sbjct: 312 GNVLVRQNPETLVPEIILLDHGLYQVLTESFRLDYCSLWQALIAAD 357
>sp|Q6INL7|ADCK1_XENLA Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
laevis GN=adck1 PE=2 SV=1
Length = 520
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 18/226 (7%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F +F +TPL AS+AQVHRA L DGR+V VKVQH ++ D+ + ++ +
Sbjct: 145 VFEEFEKTPLGAASLAQVHRAVLQDGRKVAVKVQHPKVQAQSSRDILIMEVLLHVVKKIF 204
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
PQ++F +I+E K P ELDF +E N +S+ + + + IP +
Sbjct: 205 PQFEFMWLIEEAKKNLPLELDFQNEGRNAEKMSSIVSSFS-------------FLRIPRI 251
Query: 124 IQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
S++ VL++E+M+G ++ND E ++ ++ KV + + Y+ I+V GF + DPHP
Sbjct: 252 YWELSTKRVLVMEYMEGGQVNDREYMKRNQIDVNKVSHALGKLYSEMIFVHGFVHCDPHP 311
Query: 182 GNFLVSKDPPH---RPILLDFGLTKKLSSSMKQALAKMFFAAAEGD 224
GN LV ++P + ILLD GL + L+ S + ++ A D
Sbjct: 312 GNVLVRQNPENCAPEIILLDHGLYQVLTESFRLDYCSLWQALIAAD 357
>sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB OS=Dictyostelium
discoideum GN=abkB PE=3 SV=1
Length = 668
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 170/340 (50%), Gaps = 44/340 (12%)
Query: 4 MFMDFVETPLATASIAQVHRATLV----DGRQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
MF+DF P+ +AS+AQVH+A L + +V VKVQ+ G+ +D+ + +++ +I
Sbjct: 311 MFIDFERLPINSASLAQVHKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYI 370
Query: 60 AWAEPQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVL 119
P + F+ I+ E +ELDF +EA+N+ + L N+ +
Sbjct: 371 TLFFPSFQFSWILGEASSCLSQELDFVNEAKNSEKMKQ-LFIGNQQ------------LS 417
Query: 120 IPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNG 177
IP+V +++ +L +EF+ G+R+++ E L+ G++ +++ + +A QI+V GF +
Sbjct: 418 IPKVYWNHTTKRILTMEFIHGVRIDNREGLDKLGIDLKELYYLFSDIFAQQIFVHGFLHS 477
Query: 178 DPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF-AE 234
DPHPGN LV K P +P +LLD GL KK+ +++ ++ + GD A S F AE
Sbjct: 478 DPHPGNLLVRKTPNGKPDLVLLDHGLYKKIDENVRLDFCHLWKSLCLGD--AKTSEFYAE 535
Query: 235 MGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVK 294
RL A + L + + E +K E + + L VI E +K
Sbjct: 536 -----RLGAGIYAKHLGILLNLNPSKSRENLRNMK--RELKDQTLVVINEILK------- 581
Query: 295 RFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMR 334
P +I++ + NL+R +++ + +L++ +
Sbjct: 582 ------NLPKEILLVLKTNNLIRQITTHFGIENGFLNMAK 615
>sp|Q9D0L4|ADCK1_MOUSE Uncharacterized aarF domain-containing protein kinase 1 OS=Mus
musculus GN=Adck1 PE=2 SV=1
Length = 525
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 116/210 (55%), Gaps = 14/210 (6%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F+ F +TPL AS+AQVH+A L DGR V VKVQH ++ +D+ + +V +
Sbjct: 145 LFLSFDDTPLGAASLAQVHKAVLHDGRTVAVKVQHPKVQAQSSKDILLMEVLVLAVKQLF 204
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P ++F ++DE K P ELDF +E N V+ L +H D K P ++
Sbjct: 205 PDFEFMWLVDEAKKNLPLELDFLNEGRNAEKVAHML----RHFDFLKVPQIHWEL----- 255
Query: 124 IQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGN 183
S++ VL++EF++G ++ND +E ++ ++ + + Y+ I+V+GF + DPHPGN
Sbjct: 256 --STKRVLLMEFVEGGQVNDRAYMEKNQIDVNEISCHLGKMYSEMIFVNGFVHCDPHPGN 313
Query: 184 FLVSKDP---PHRPILLDFGLTKKLSSSMK 210
LV K P +LLD GL + L+ +
Sbjct: 314 VLVRKRPDTGKAEIVLLDHGLYQVLTEEFR 343
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 128/237 (54%), Gaps = 18/237 (7%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIA--WA 62
F+ F +TP+ +ASIAQVH A L DGR V+VK+Q GI ++ DL K +++ +
Sbjct: 100 FLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQRPGIAEMMKTDLSIIKKLLNITKTKFT 159
Query: 63 EPQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSN-KKPAYEVDVLIP 121
+ D IDE +ELDF +E N + K +ED + Y +D L
Sbjct: 160 DALIDPKEAIDELFISTTQELDFINEINNIK------KFKKLNEDVKFVRTPYTIDKL-- 211
Query: 122 EVIQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
+E ++++E + GI++++ + L G + +++ +++T +Y Q++ DGFF+GDPHP
Sbjct: 212 ----CTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHP 267
Query: 182 GNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLR 238
GN L+ ++ +DFG+ +S S+K +L A A D ++S +G++
Sbjct: 268 GNLLIREN---HICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVK 321
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWI- 59
+ ++ F PLA AS+ QVH+A L G VVVKVQ G+K + DL K I +
Sbjct: 148 IAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQ 207
Query: 60 ---AWAEPQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
W + D+N I +E CK +E D+ E + N + ED K
Sbjct: 208 NHPKWGRGR-DWNGIYEECCKILWQETDYLREGRSADTFRRNF----RGEDWVK------ 256
Query: 117 DVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
+P V +S +L LE++ GI+++ ++LEA G+ ++++ + RAY Q+ GF
Sbjct: 257 ---VPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGF 313
Query: 175 FNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAE 234
F+ DPHPGN VS + I DFG+ +++ K L F AE + ++++
Sbjct: 314 FHADPHPGNLAVSPEAGEL-IFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVA 372
Query: 235 MG 236
+G
Sbjct: 373 LG 374
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 19/233 (8%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIA 60
+G F + P+A SI Q+HRA L G V +KV+ GI I+ +D K + + +A
Sbjct: 106 LGETFQEIESEPIAAGSIGQIHRAVLQSGETVAIKVKRPGIDVIVEQDSLLIKDVAELLA 165
Query: 61 WAE--PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDV 118
E YD + DE+ + EL+F++EA T + NL K D N+ +
Sbjct: 166 LTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLA-KTTWFDPNQ-------L 217
Query: 119 LIPEVIQ--SSETVLILEFMDGI-----RLNDCESLEAFGVNKQKVVEEITRAYAHQIYV 171
+IP+V +++ L+LE++DG+ L S + K+++ + RA+ Q+YV
Sbjct: 218 VIPKVYWELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYV 277
Query: 172 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGD 224
DGFF+ DPHPGN D R L+D G+ +L +Q L +M A + D
Sbjct: 278 DGFFHADPHPGNIFYLAD--GRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLD 328
>sp|Q80V03|ADCK5_MOUSE Uncharacterized aarF domain-containing protein kinase 5 OS=Mus
musculus GN=Adck5 PE=2 SV=2
Length = 582
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 132/250 (52%), Gaps = 17/250 (6%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F +F P+A AS+AQVHRA L DG V VKVQ+ ++ D++ + ++ +
Sbjct: 197 LFQEFDYEPMAAASLAQVHRAKLHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMH 256
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P + F+ ++ + +ELDF +E N + L K+ H V+IP V
Sbjct: 257 PSFGFSWVLQDLKGTLVQELDFENEGRNAERCAQEL--KHFHY-----------VVIPRV 303
Query: 124 I--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
+SS+ VL +F +G ++ND E +++ G+ Q V +++ + +A QI+ GF + DPHP
Sbjct: 304 HWDRSSKRVLTADFCNGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQIFHTGFIHSDPHP 363
Query: 182 GNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRL 239
GN LV K P + +LLD GL + L + +L +++ A D+ A+ A +G++
Sbjct: 364 GNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALGVQD 423
Query: 240 RLDVPEQAME 249
+ E M+
Sbjct: 424 YMLFSEVLMQ 433
>sp|Q3MIX3|ADCK5_HUMAN Uncharacterized aarF domain-containing protein kinase 5 OS=Homo
sapiens GN=ADCK5 PE=2 SV=2
Length = 580
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 130/250 (52%), Gaps = 17/250 (6%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F +F P+A AS+AQVHRA L DG V VKVQ+ ++ D+ + ++ +
Sbjct: 197 LFQEFDYQPIAAASLAQVHRAKLHDGTSVAVKVQYIDLRDRFDGDIHTLELLLRLVEVMH 256
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P + F+ ++ + +ELDF +E N E ++ A+ V++P V
Sbjct: 257 PSFGFSWVLQDLKGTLAQELDFENEGRNA-------------ERCARELAHFPYVVVPRV 303
Query: 124 I--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
+SS+ VL +F G ++ND E++ + G+ + E++ +A+A QI+ GF + DPHP
Sbjct: 304 HWDKSSKRVLTADFCAGCKVNDVEAIRSQGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHP 363
Query: 182 GNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRL 239
GN LV K P + +LLD GL + L + AL +++ A D A+ + A +G++
Sbjct: 364 GNVLVRKGPDGKAELVLLDHGLYQFLEEKDRAALCQLWRAIILRDDAAMRAHAAALGVQD 423
Query: 240 RLDVPEQAME 249
L E M+
Sbjct: 424 YLLFAEMLMQ 433
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 119/242 (49%), Gaps = 26/242 (10%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLV----DGRQVVVKVQHQGIKTIILEDLKNAKSIV 56
+ +F F P+A+ASIAQVH ATL DGR+V VKV G+ +I DL + +
Sbjct: 113 LSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVA 172
Query: 57 DWIA--WAE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPA 113
W+ WA+ + ++ E+ K ELD EA N + N
Sbjct: 173 TWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSEL--------- 223
Query: 114 YEVDVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYV 171
+L+PEV + V ++E M G+R++ + L A GV+ K+ + + Q++
Sbjct: 224 ----LLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFR 279
Query: 172 DGFFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH--VA 227
DGFF+ D HPGN LVS P R I LDFG+ LS K LA+ F A + D+ VA
Sbjct: 280 DGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVA 339
Query: 228 LL 229
LL
Sbjct: 340 LL 341
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 115/243 (47%), Gaps = 24/243 (9%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILED-------LKNAKSIV 56
+F F TPLA+AS+ QVHRA L G VVVKVQ G+ +++ D L+ AK +
Sbjct: 124 IFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWL 183
Query: 57 DWIAWAEPQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
+Y+ I E+ E+D+ E +N N +
Sbjct: 184 PGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPR------------ 231
Query: 117 DVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
V +PE+ ++ VL LE++ GI+++D ++LE G+N V++ AY Q+ VDGF
Sbjct: 232 -VRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGF 290
Query: 175 FNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAE 234
F DPHPGN V D I DFG ++ K + + FFA D +L A
Sbjct: 291 FQSDPHPGNMAV--DSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIY 348
Query: 235 MGL 237
MGL
Sbjct: 349 MGL 351
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 162/354 (45%), Gaps = 46/354 (12%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F F P+A+ASIAQVH L DGR+V VKV + II DL + W+
Sbjct: 116 VFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLERLS 175
Query: 64 PQ-YDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P P ++ E+ ELD EA N + N+G + +++
Sbjct: 176 PDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDL-------------IML 222
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PE+I SS VL++E M G+ ++ E+L A G++ K+ + + Q++ DGFF+ D
Sbjct: 223 PEMIWDLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHAD 282
Query: 179 PHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 236
HPGN +VS P R I LDFG+ L S K+ LA+ F A D+ + E G
Sbjct: 283 MHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESG 342
Query: 237 LRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSE----QRAKNLKVIQEKMKLNQKE 292
VP S +E V+ + E + K++ + Q ++L Q
Sbjct: 343 W-----VP------------ASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTS 385
Query: 293 VKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVL--QVG 344
+RFN V+ P +++ +LN + GL ++ + +PF E + QVG
Sbjct: 386 -RRFN-VEIQPQLVLLQKTLLN-VEGLGRQLDPELDLWQTAKPFLERWMNEQVG 436
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 118/241 (48%), Gaps = 22/241 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F F PLA+ASI+QVH ATL DGR+VVVKV I+ I +D+ KS+ + P
Sbjct: 119 FAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDIALLKSLATLVEHTHP 178
Query: 65 QYD-FNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIP 121
D P I+ E ELD E N ++ + E S+ D+ +P
Sbjct: 179 NADKIRPCEIVAEIETTLAAELDLQREGANASVL------RRFWEASD-------DIYVP 225
Query: 122 EVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDP 179
EVI S +E VL LE M GI +D L+A G++++ + + R + Q++ D FF+ D
Sbjct: 226 EVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADA 285
Query: 180 HPGNFLVSKDPPH----RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
H GN V DP R I LDFG+ +LS + LA+ F A D+ + E
Sbjct: 286 HSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEA 345
Query: 236 G 236
G
Sbjct: 346 G 346
>sp|Q54P00|ABKD_DICDI Probable serine/threonine-protein kinase abkD OS=Dictyostelium
discoideum GN=abkD PE=2 SV=1
Length = 695
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F DF P+A AS+AQVHRA +G +V VKVQ+ ++ D+ ++ + A P
Sbjct: 315 FSDFDRLPIAAASLAQVHRAITKEGEEVAVKVQYVDLQRNFDGDIFTHNVLLTLVNMAFP 374
Query: 65 QYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEVI 124
++FN + +E KELDF+ EA+N + +L N + IP+V
Sbjct: 375 DFEFNWMAEEMKNVLIKELDFSQEADNAERAAQDLSSNN-------------NAYIPKVF 421
Query: 125 Q--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPG 182
+ SS+ +L EF+ G ++N+ +++ + G++++ V + QI++ F + DPH G
Sbjct: 422 RPYSSKRILTTEFIHGCKINNVQAIRSMGLSEKTVSQRFMEIMCEQIFIHAFVHVDPHAG 481
Query: 183 NFLVSKDP--PHRP--ILLDFGLTKKLSSSMKQALAKMF 217
N LV + P P++P +LLD GL ++ + ++
Sbjct: 482 NVLVRQHPNHPNQPQIVLLDHGLYREYDEEFRLNFCNLY 520
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F F PLA+ASI+QVH ATL D R VVVKV I+ I +D+ KS+ + P
Sbjct: 119 FAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVEHTHP 178
Query: 65 QYD-FNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIP 121
D P I+ E ELD E N ++ + E S+ D+ +P
Sbjct: 179 NADKIRPREIVAEIETTLAAELDLQREGANASVL------RRFWEASD-------DIYVP 225
Query: 122 EVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDP 179
EVI S +E VL LE M GI +D L+A G++++ + + R + Q++ D FF+ D
Sbjct: 226 EVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADA 285
Query: 180 HPGNFLVSKDPPH----RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
H GN V DP R I+LDFG+ +LS + LA+ F A D+ + E
Sbjct: 286 HSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEA 345
Query: 236 G 236
G
Sbjct: 346 G 346
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F F PLA+ASI+QVH ATL D R VVVKV I+ I +D+ KS+ + P
Sbjct: 119 FAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDIALLKSLATLVEHTHP 178
Query: 65 QYD-FNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIP 121
D P I+ E ELD E N ++ + E S+ D+ +P
Sbjct: 179 NADKIRPREIVAEIETTLAAELDLQREGANASVL------RRFWEASD-------DIYVP 225
Query: 122 EVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDP 179
EVI S +E VL LE M GI +D L+A G++++ + + R + Q++ D FF+ D
Sbjct: 226 EVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADA 285
Query: 180 HPGNFLVSKDPPH----RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
H GN V DP R I+LDFG+ +LS + LA+ F A D+ + E
Sbjct: 286 HSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEA 345
Query: 236 G 236
G
Sbjct: 346 G 346
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F F PLA+ASI+QVH ATL D R+VVVKV I+ I +D+ KS+ + P
Sbjct: 119 FAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISDDIALLKSLATLVEHTHP 178
Query: 65 QYD-FNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIP 121
D P I+ E ELD E N ++ + E S+ D+ +P
Sbjct: 179 NADKIRPREIVAEIETTLAAELDLQREGANASVL------RRFWEASD-------DIYVP 225
Query: 122 EVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDP 179
EVI S +E VL LE M GI +D L+A G++++ + + R + Q++ D FF+ D
Sbjct: 226 EVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADA 285
Query: 180 HPGNFLVSKDPPH----RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
H GN V DP R I LDFG+ +LS + LA+ F A D+ + E
Sbjct: 286 HSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEA 345
Query: 236 G 236
G
Sbjct: 346 G 346
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 21/241 (8%)
Query: 4 MFMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWA 62
+F DF ETPLA+ASIAQVH A L + GR++V+KV I+ +I DL+ +++ +A
Sbjct: 120 LFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARF 179
Query: 63 EPQY-DFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVL 119
PQ PI ++E+ K EL+ EA N + N + + Y
Sbjct: 180 VPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNF--------TGSEALY----- 226
Query: 120 IPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNG 177
+PEV E VL++E + GI ++D +LEA G N + + E + Q++ D FF+
Sbjct: 227 VPEVFTEHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHA 286
Query: 178 DPHPGNFLVSKDPPHRPIL--LDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
D HPGN VS + P P+ +D G+ L+ K+ LA+ F A D+ + E
Sbjct: 287 DMHPGNIFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVES 346
Query: 236 G 236
G
Sbjct: 347 G 347
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 24/233 (10%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F DF P+A+ASIAQVH AT+ G + V VKV + +I DL + I W
Sbjct: 115 LFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWA 174
Query: 60 A--WAE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
WA+ + ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL------------ 222
Query: 117 DVLIPEVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
+L+PE+ + TVL++E M G+ ++ E+L A GV+ K+ E + Q++ DGF
Sbjct: 223 -LLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGF 281
Query: 175 FNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
F+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 282 FHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 24/233 (10%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F DF P+A+ASIAQVH AT+ G + V VKV + +I DL + I W
Sbjct: 115 LFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWA 174
Query: 60 A--WAE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
WA+ + ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL------------ 222
Query: 117 DVLIPEVIQS--SETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
+L+PE+ + TVL++E M G+ ++ E+L A GV+ K+ E + Q++ DGF
Sbjct: 223 -LLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGF 281
Query: 175 FNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
F+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 282 FHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 25/243 (10%)
Query: 4 MFMDFVETPLATASIAQVHRATLVD-----GRQVVVKVQHQGIKTIILEDLKNAKSIVDW 58
+F+DF P+A+AS+AQVH+A L GR+V VKV GI +I +DL +++ W
Sbjct: 115 LFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGW 174
Query: 59 IA--WAE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
+ +A+ + ++ E+ K ELD EA N + N +
Sbjct: 175 VEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDM----------- 223
Query: 116 VDVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+++PEV SS VL LE+M GI + E L GV+ QK+ + Q++ G
Sbjct: 224 --LIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHG 281
Query: 174 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFA 233
FF+ D HPGN V+ D R I LDFG+ L+ + K LA F A D+ + +A
Sbjct: 282 FFHADMHPGNIFVAAD--GRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHI 339
Query: 234 EMG 236
E G
Sbjct: 340 ESG 342
>sp|B7VHC3|UBIB_VIBSL Probable ubiquinone biosynthesis protein UbiB OS=Vibrio splendidus
(strain LGP32) GN=ubiB PE=3 SV=1
Length = 544
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F DF PLA+ASIAQVH A L + GR++V+KV I+ +I DLK + +A +
Sbjct: 121 FTDFDIEPLASASIAQVHTAKLKESGREIVLKVIRPDIRPVIDADLKLMHRMARIVAKSL 180
Query: 64 PQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ P+ + E+ K ELD EA N + + E S ++ +
Sbjct: 181 PEARRLKPVEVVHEYEKTLLDELDLRREAANA------IQLRRNFEGSE-------ELYV 227
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PEVI SSET+++ E + GI+++D E+LEA G N + + E + Q++ D FF+ D
Sbjct: 228 PEVIPDLSSETLMVSERIYGIQVSDIETLEANGTNMKLLAERGVTVFFTQVFRDSFFHAD 287
Query: 179 PHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN V+ + P P I LD G+ L+S K+ LA+ A D+
Sbjct: 288 MHPGNVFVNPENPDNPQWIGLDCGIVGTLNSEDKRYLAENLLAFFNRDY 336
>sp|O04212|Y2090_ARATH Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana
GN=At2g40090 PE=2 SV=2
Length = 538
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 20/237 (8%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
+F +F P+A+AS+AQVH A DG++V VKVQH + D +V+ +
Sbjct: 156 VFAEFDPVPIASASLAQVHVARTHDGKKVAVKVQHAHMTDTAAADTAAVGVLVNTLHRIF 215
Query: 64 PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIPEV 123
P +D+ ++DE + PKELDF EA+N N C + + P V P +
Sbjct: 216 PSFDYRWLLDEMSESLPKELDFLVEAKN------NEKCLDNFRKLS--PHIAEYVYAPTI 267
Query: 124 IQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHP 181
S+ +L +EFMDG ++ND + + G+ +V + +++ +A ++ GF + DPH
Sbjct: 268 YWNLSTSKLLTMEFMDGAQVNDVDKIRKLGIQPYEVSKLVSQTFAEMMFKHGFVHCDPHA 327
Query: 182 GNFLVSKDPP--------HRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVAL 228
N +V DP +P ++LD GL K+L + + A ++ A D A+
Sbjct: 328 ANLIVRPDPSGKRNIYGKRKPQLVILDHGLYKELDFNTRFNYASLWKALVFSDAKAI 384
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 21/241 (8%)
Query: 4 MFMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWA 62
+F DF ETPLA+ASIAQVH L + GR++V+KV I+ +I DL+ +++ +A
Sbjct: 120 LFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARF 179
Query: 63 EPQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVL 119
PQ PI ++E+ K EL+ EA N + N + +
Sbjct: 180 VPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDA-------------LY 226
Query: 120 IPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNG 177
+PEV E VL++E + GI ++D +LEA G N + + E + Q++ D FF+
Sbjct: 227 VPEVFTEHCREHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHA 286
Query: 178 DPHPGNFLVSKDPPHRPIL--LDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
D HPGN VS + P P+ +D G+ L+ K+ LA+ F A D+ + E
Sbjct: 287 DMHPGNIFVSYEHPDNPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVES 346
Query: 236 G 236
G
Sbjct: 347 G 347
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 114/233 (48%), Gaps = 24/233 (10%)
Query: 4 MFMDFVETPLATASIAQVHRATLV----DGRQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F DF P+A+ASIAQVH ATL G+QV VKV + +I DL + I W
Sbjct: 115 IFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIAVWA 174
Query: 60 A--WAE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
WA+ + ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL------------ 222
Query: 117 DVLIPEVIQSSET--VLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
+L+PE+ T VL++E M G+ ++ ++L GV+ K+ E + Q++ DGF
Sbjct: 223 -LLVPEMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGF 281
Query: 175 FNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
F+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 282 FHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDG----RQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+F +F P+A+ASIAQVH A L G + V VKV + +I DL + I W
Sbjct: 115 LFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIATWA 174
Query: 60 A--WAEPQYDFNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYE 115
WA+ + P ++ E+ K ELD EA N + N +
Sbjct: 175 ERLWADGR-RLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDL----------- 222
Query: 116 VDVLIPEVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDG 173
+L+PE+ S+ VL++E M G+ ++ ++L A GV+ K+ E + Q++ DG
Sbjct: 223 --LLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDG 280
Query: 174 FFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
FF+ D HPGN VS DP H R I LDFG+ LS K LA+ F A + D+
Sbjct: 281 FFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A7MTX4|UBIB_VIBHB Probable ubiquinone biosynthesis protein UbiB OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=ubiB PE=3 SV=1
Length = 544
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQ-VVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F +F PLA+ASIAQVH A L D Q VV+KV I+ +I DLK + +A A
Sbjct: 121 FTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMASIVAGAM 180
Query: 64 PQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ P+ + E+ K ELD EA N + + E S ++ +
Sbjct: 181 PEARRLKPVEVVREYEKTLLDELDLRREAANA------IQLRRNFEGSE-------ELYV 227
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PEV S+ETV++ E + GI+++D E LEA G N + + E + Q++ D FF+ D
Sbjct: 228 PEVFPDFSNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHAD 287
Query: 179 PHPGNFLVSKDPPHRPIL--LDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN V + P P+ LD G+ L+S K+ LA+ F A D+
Sbjct: 288 MHPGNVFVKPEHPENPMWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 20/238 (8%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIA--W 61
++ +F P+A+ASIAQVH+A L G QV VKV + +I +DL + W+ +
Sbjct: 117 LYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVERLF 176
Query: 62 AE-PQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
A+ + ++ E+ K ELD EA N ++ LG ++ D +++
Sbjct: 177 ADGKRLKPREVVAEFDKYLHDELDLMREAAN----ASQLGRNFQNSDM---------LIV 223
Query: 121 PEVIQSSET--VLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
P+V T VL +E+MDG ++D L+A G++ K+ + + Q++ DGFF+ D
Sbjct: 224 PKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHAD 283
Query: 179 PHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 236
HPGN LV+ D +R I LDFG+ L+ K+ LA F A D+ + +A E G
Sbjct: 284 MHPGNILVAAD--NRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESG 339
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQ-VVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F +F PLA+ASIAQVH A L D Q VV+KV I+ +I DLK + +A A
Sbjct: 121 FTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMARIVAGAM 180
Query: 64 PQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ P+ + E+ K ELD EA N + + E S ++ +
Sbjct: 181 PEARRLKPVEVVREYEKTLLDELDLRREAANA------IQLRRNFEGSE-------ELYV 227
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PEV S+ETV++ E + GI+++D E LEA G N + + E + Q++ D FF+ D
Sbjct: 228 PEVFPDFSNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHAD 287
Query: 179 PHPGNFLVSKDPPHRPIL--LDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN V + P P+ LD G+ L+S K+ LA+ F A D+
Sbjct: 288 MHPGNVFVKPEHPENPMWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|A6TGL5|UBIB_KLEP7 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=ubiB PE=3 SV=1
Length = 546
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 22/236 (9%)
Query: 1 MGGM-----FMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKS 54
MGG+ F DF PLA+ASIAQVH A L + G++VV+KV I II D+K
Sbjct: 113 MGGLPVETWFDDFSVEPLASASIAQVHTARLKENGKEVVIKVIRPDILPIIKADMKLIYR 172
Query: 55 IVDWIAWAEP---QYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKK 111
+ W+ P + ++ E+ K EL+ E+ N + + EDS
Sbjct: 173 LARWVPRLLPDGRRLRPQEVVREYEKTLLDELNLLRESANA------IQLRRNFEDS--- 223
Query: 112 PAYEVDVLIPEVIQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYV 171
P V + P+ SE+++++E + GI ++D E+LEA G N Q + E + + Q++
Sbjct: 224 PMLYVPEVYPDY--CSESMMVMERIYGIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFR 281
Query: 172 DGFFNGDPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
D FF+ D HPGN VS + P P I +D G+ L+ K+ LA+ F A D+
Sbjct: 282 DSFFHADMHPGNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDY 337
>sp|B5XYH9|UBIB_KLEP3 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae (strain 342) GN=ubiB PE=3 SV=1
Length = 546
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 22/236 (9%)
Query: 1 MGGM-----FMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKS 54
MGG+ F DF PLA+ASIAQVH A L + G++VV+KV I II D+K
Sbjct: 113 MGGLPVDAWFDDFSVEPLASASIAQVHTARLKENGKEVVIKVIRPDILPIIKADMKLIYR 172
Query: 55 IVDWIAWAEP---QYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKK 111
+ W+ P + ++ E+ K EL+ E+ N + + EDS
Sbjct: 173 LARWVPRLLPDGRRLRPQEVVREYEKTLLDELNLLRESANA------IQLRRNFEDS--- 223
Query: 112 PAYEVDVLIPEVIQSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYV 171
P V + P+ SE+++++E + GI ++D E+LEA G N Q + E + + Q++
Sbjct: 224 PMLYVPEVYPDY--CSESMMVMERIYGIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFR 281
Query: 172 DGFFNGDPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
D FF+ D HPGN VS + P P I +D G+ L+ K+ LA+ F A D+
Sbjct: 282 DSFFHADMHPGNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDY 337
>sp|Q2NWT9|UBIB_SODGM Probable ubiquinone biosynthesis protein UbiB OS=Sodalis
glossinidius (strain morsitans) GN=ubiB PE=3 SV=1
Length = 544
Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 5 FMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAEP 64
F DF + PLA+ASIAQVH A L +G++VV+KV I +I D++ + W+ P
Sbjct: 121 FDDFQQEPLASASIAQVHTARLKNGQEVVIKVIRPDILPMIKADMRLMYRLASWVPHLLP 180
Query: 65 Q-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLIP 121
P+ + E+ K EL+ EA N + N + P + IP
Sbjct: 181 DGRRLRPVEVVLEYEKTLLDELNLLREAANAIQLRRNF---------DGSPM----LYIP 227
Query: 122 EVI--QSSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDP 179
EV SET++++E + G+ +ND +LE G N + + E + + Q++ D FF+GD
Sbjct: 228 EVYPDYCSETMMVMERIYGVPVNDVAALEKQGTNMKLLAERGVQVFFTQVFRDSFFHGDM 287
Query: 180 HPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN VS + P P I +D G+ L+ K+ LA+ F A D+
Sbjct: 288 HPGNIFVSFEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDY 335
>sp|Q09621|LACT2_CAEEL Beta-lactamase domain-containing protein 2 OS=Caenorhabditis
elegans GN=lact-2 PE=4 SV=1
Length = 473
Score = 102 bits (255), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 21/273 (7%)
Query: 384 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL 443
G + Y VI+D G + R PD+ VFS TK + A + LVD G +
Sbjct: 91 GASITVYHKDRVIVDLQGGYADKASGRKWTPDTRTVVFSTTKAVGAVCVAMLVDRGHISY 150
Query: 444 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA 503
++ ++ IWPEF NGK+ I + +++H +GL + + ++ E+ D+++ IA
Sbjct: 151 DDKMSKIWPEFAQNGKENITIDWLMSHRAGLAALDMPITIEDA---NDFEKMSEVIASQK 207
Query: 504 PETEPGQEQLYHYLSFGWLCGGIIERA--SGKKFQEILEEGIIQPLSIDGELYIGIPPGV 561
P EPG + YH +++GW+ I+ R+ G+ +E + ID +IG+PP
Sbjct: 208 PNWEPGTKSGYHAITYGWIVDQIVRRSDPKGRSVGRFFKEEVADVHGID--FHIGLPPSE 265
Query: 562 ESRLASLTIDTDDLNKVSGINNRPDLRLPSSF----QPDKISQLAAITPA---------V 608
E ++ L++ + L+ V I + P + + + P+ I++ A P
Sbjct: 266 EHTVSRLSMPS-TLHLVREIVHDPRVLIVLAVFNLRPPNSIARKIAANPTWFKLEQDVNT 324
Query: 609 FNMLNIRRAIIPAANGHCSARALARYYAALADG 641
FN + AA G +R LAR ++ + G
Sbjct: 325 FNNPTLHAMEQVAALGITKSRDLARLFSLVQQG 357
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLV----DGRQVVVKVQHQGIKTIILEDLKNAKSIV 56
+G +F+ F ETP+A+ASIAQVH AT+ + R+V VKV ++ +I +DL +
Sbjct: 113 VGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMA 172
Query: 57 DWIAWAEP---QYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPA 113
W+ P + ++ E+ K ELD EA N + N+
Sbjct: 173 GWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLEL--------- 223
Query: 114 YEVDVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYV 171
VLIPE+ V+++E M+G+ + + L A GV+ K+ + + Q++
Sbjct: 224 ----VLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFR 279
Query: 172 DGFFNGDPHPGNFLVSKDPPH--RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
DGFF+ D HPGN VS P R I LDFG+ L+ S K+ LA+ F A D+
Sbjct: 280 DGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDY 335
>sp|Q7MQ31|UBIB_VIBVY Probable ubiquinone biosynthesis protein UbiB OS=Vibrio vulnificus
(strain YJ016) GN=ubiB PE=3 SV=1
Length = 544
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATL-VDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F DF PLA+ASIAQVH A L ++VV+KV I+ II DLK + + +A A
Sbjct: 121 FSDFDLVPLASASIAQVHTAKLKTTNQEVVLKVIRPDIRPIIDADLKLMRRMASIVAKAM 180
Query: 64 PQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ PI + E+ K ELD EA N + + DS ++ +
Sbjct: 181 PEARRLKPIEVVREYEKTLLDELDLRREAANA------IQLRRNFTDSE-------ELYV 227
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PEV S+ETV++ E + GI+++D L+A G N + + E + Q++ D FF+ D
Sbjct: 228 PEVYPDFSNETVMVSERIYGIQVSDITGLKANGTNMKLLAERGVSVFFTQVFRDSFFHAD 287
Query: 179 PHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN V+ + P P I LD G+ L+S K+ LA+ F A D+
Sbjct: 288 MHPGNVFVNPEHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|Q6LVW8|UBIB_PHOPR Probable ubiquinone biosynthesis protein UbiB OS=Photobacterium
profundum GN=ubiB PE=3 SV=1
Length = 545
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F DF ETPLA+ASIAQVH ATL + GR+VV+KV I +I D+K + +A
Sbjct: 122 FDDFDETPLASASIAQVHTATLKENGREVVLKVIRPDILPVIQADIKLMYRMAHIVARLL 181
Query: 64 PQYDF-NPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ P+ + E+ K EL+ EA N+ + + EDS+ + +
Sbjct: 182 PEARLLRPVEVVREYEKTLLDELNMMREAANS------IQLRRNFEDSDT-------LYV 228
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PE+ SS +L++E + GI+++D ++L A G N + + E + Q++ D FF+ D
Sbjct: 229 PEMFTDYSSTNLLVMERIYGIQVSDIDALIANGTNMKLLSENAVNIFFTQVFRDSFFHAD 288
Query: 179 PHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN VS + P P I LD G+ L+ K+ LA+ A D+
Sbjct: 289 MHPGNIFVSYENPETPQWIALDCGIVGTLNRDDKRYLAENLLAFFHRDY 337
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATL-VDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+ +F DF +TPLA+ASI+QVH ATL +G+QVV+KV ++ I DL+ + W+
Sbjct: 117 IDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVATWV 176
Query: 60 AWAEPQYDFNPIIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVL 119
N ++ E + P E+ + +NT + NL + + + + D L
Sbjct: 177 ---------NRLLGEGNRLRPVEV--VEDYQNTILGELNLKLEALNATKLRNNFLDSDAL 225
Query: 120 -IPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFN 176
IP V + ++++E +DGI ++D E+L A G N + + E + Q++ D FF+
Sbjct: 226 YIPYVYEELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFH 285
Query: 177 GDPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAE 234
D HPGN +S++ P P I LD G+ L+ K+ LA+ F A D+ + + E
Sbjct: 286 ADMHPGNIFISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVE 345
Query: 235 MG 236
G
Sbjct: 346 SG 347
>sp|Q8DDQ1|UBIB_VIBVU Probable ubiquinone biosynthesis protein UbiB OS=Vibrio vulnificus
(strain CMCP6) GN=ubiB PE=3 SV=1
Length = 544
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 5 FMDFVETPLATASIAQVHRATL-VDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
F DF PLA+ASIAQVH A L ++VV+KV I+ II DLK + + +A A
Sbjct: 121 FSDFDLVPLASASIAQVHTAKLKTTNQEVVLKVIRPDIRPIIDADLKLMRRMARIVAKAM 180
Query: 64 PQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVDVLI 120
P+ PI + E+ K ELD EA N + + DS ++ +
Sbjct: 181 PEARRLKPIEVVREYEKTLLDELDLRREAANA------IQLRRNFTDSE-------ELYV 227
Query: 121 PEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGD 178
PEV S+ETV++ E + GI+++D L+A G N + + E + Q++ D FF+ D
Sbjct: 228 PEVYPDFSNETVMVSERIYGIQVSDIAGLKANGTNMKLLAERGVSVFFTQVFRDSFFHAD 287
Query: 179 PHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
HPGN V+ + P P I LD G+ L+S K+ LA+ F A D+
Sbjct: 288 MHPGNVFVNPEHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 26/241 (10%)
Query: 4 MFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILEDLKNAKSIVDWIAWAE 63
++ +F P+A+ASIAQVH+A L G +V VKV + +I +DL + AW E
Sbjct: 117 LYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGA---AWVE 173
Query: 64 PQYD----FNP--IIDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEVD 117
+ P ++ E+ K ELD EA N + LG +N H +SN
Sbjct: 174 RLFSDGRRLKPLEVVAEFDKYLHDELDLMREAAN----AGQLG-RNFH-NSNM------- 220
Query: 118 VLIPEVIQSSET--VLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFF 175
+++P+V T VL +E+MDG + D L+A G++ K+ + + Q++ DGFF
Sbjct: 221 LIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFF 280
Query: 176 NGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEM 235
+ D HPGN LV+ D +R I LDFG+ L+ K+ LA F A D+ + +A E
Sbjct: 281 HADMHPGNILVAAD--NRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIES 338
Query: 236 G 236
G
Sbjct: 339 G 339
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+ F DF PLA+ASIAQVH A L D GR++V+KV I+ +I D++ + +
Sbjct: 117 LDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLV 176
Query: 60 AWAEPQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
P+ P+ I+E+ K ELD EA N + + E S
Sbjct: 177 EQHIPEARRLKPVEVIEEYEKTLLDELDLRREASNA------MQLRRNFEGSE------- 223
Query: 117 DVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
++ +PEVI SSE +++ E + GI+++D E LE G N + + E + Q++ D F
Sbjct: 224 ELYVPEVILDLSSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSF 283
Query: 175 FNGDPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
F+ D HPGN V+ D P P I LD G+ L+ K+ LA+ D+
Sbjct: 284 FHADMHPGNVFVNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDY 336
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 1 MGGMFMDFVETPLATASIAQVHRATLVD-GRQVVVKVQHQGIKTIILEDLKNAKSIVDWI 59
+ F DF PLA+ASIAQVH A L D GR++V+KV I+ +I D++ + +
Sbjct: 117 LDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLV 176
Query: 60 AWAEPQ-YDFNPI--IDEWCKEAPKELDFNSEAENTRIVSANLGCKNKHEDSNKKPAYEV 116
P+ P+ I+E+ K ELD EA N + + E S
Sbjct: 177 EQHIPEARRLKPVKVIEEYEKTLLDELDLRREASNA------MQLRRNFEGSE------- 223
Query: 117 DVLIPEVIQ--SSETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGF 174
++ +PEVI SSE +++ E + GI+++D E LE G N + + E + Q++ D F
Sbjct: 224 ELYVPEVILDLSSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSF 283
Query: 175 FNGDPHPGNFLVSKDPPHRP--ILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 225
F+ D HPGN V+ D P P I LD G+ L+ K+ LA+ D+
Sbjct: 284 FHADMHPGNVFVNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDY 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,804,032
Number of Sequences: 539616
Number of extensions: 15148421
Number of successful extensions: 42231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 41647
Number of HSP's gapped (non-prelim): 328
length of query: 864
length of database: 191,569,459
effective HSP length: 126
effective length of query: 738
effective length of database: 123,577,843
effective search space: 91200448134
effective search space used: 91200448134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)