BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002928
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARV 627
N LT ++ HYDLS++ F LFLD + YSCA F+ E LE AQ+ K+ L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687
G +L+IGCGWG + Q G+TLS+ Q + + E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 688 YRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFIS-VPDQCYDEH 746
+ Q + DRI+S E GHD +FF I+ + Q +H
Sbjct: 123 WEQF--NEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 747 RLSPG--------FIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCW 798
L FI IFPGG P++ + ++ + + +++ HY +TL W
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV-EEQSAKTGFTLTRRQSLQPHYARTLDLW 239
Query: 799 RKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFK 834
+ E +S+ A+ SE+ + Y CA F+
Sbjct: 240 AEALQEHKSEAIAIQ-SEEVYERYMKYLTGCAKLFR 274
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLE 635
N+ HYDLS++ F LFLD + YSCA F+ + L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLLD 70
Query: 636 IGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695
+GCGWG V++ G+TLS+ Q + + V + R+ L + Q
Sbjct: 71 VGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DE 128
Query: 696 KYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCYDEHRLSP----- 750
DRI+S E GH+ + FF I+ R P
Sbjct: 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSFTF 188
Query: 751 ----GFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQ 806
FI IFPGG LPS+ + S++ V ++++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPXVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKIRALGFSEKFIRTWEYYFDYCAAGFK 834
+ AL SE+ + Y CA F+
Sbjct: 248 GQAIALQ-SEEVYERYXKYLTGCAEXFR 274
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLE 635
N+ HYDLS++ F LFLD + YSCA F+ + L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70
Query: 636 IGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695
+GCGWG + V++ G+TLS+ Q + + V + R+ L + Q
Sbjct: 71 VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DE 128
Query: 696 KYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCYDEHRLSP----- 750
DRI+S E GH+ + FF I+ R P
Sbjct: 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 188
Query: 751 ----GFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQ 806
FI IFPGG LPS+ + S++ V ++++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPMVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKIRALGFSEKFIRTWEYYFDYCAAGFK 834
+ AL SE+ + Y CA F+
Sbjct: 248 GQAIALQ-SEEVYERYMKYLTGCAEMFR 274
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 120/275 (43%), Gaps = 21/275 (7%)
Query: 569 TLTQAR-RNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARV 627
T T+ R +I HYD+S++ F+LF D + YSCA F+ LE AQ KV L + K +
Sbjct: 29 TKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDL 88
Query: 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687
G +L+IGCGWGT V++ G+TLS+ Q E + ++ L
Sbjct: 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG 148
Query: 688 YRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCYD--- 744
+ + DRI+S E E GH+ ++FF C + Q SV Y+
Sbjct: 149 WEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ-SSVSYHPYEMAA 205
Query: 745 -------EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRC 797
E FI IFPGG LPS + + E L ++ HY +TLR
Sbjct: 206 RGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL-SLRPHYIKTLRI 264
Query: 798 WRKNFLEKQSKIRALGFSE------KFIRTWEYYF 826
W + K + E K++R E+YF
Sbjct: 265 WGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYF 299
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 114/277 (41%), Gaps = 17/277 (6%)
Query: 570 LTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSK 629
LT N+ HYDLS++ F LFLD + YSCA F+ + L+ AQ+ K+ L + K +
Sbjct: 5 LTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEP 64
Query: 630 GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYR 689
G +L+IGCGWG +++ G+TLSE Q + + + R+ L +
Sbjct: 65 GMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWE 124
Query: 690 QLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCYDEHRLS 749
+ DRI+S E GH FF I P + E R
Sbjct: 125 KF--DEPVDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRP--TFKEGREK 180
Query: 750 -----------PGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCW 798
FI IFPGG LPS+ + V ++++ +HY +TL W
Sbjct: 181 GLTLTHELVHFTKFILAEIFPGGWLPSIPTV-HEYAEKVGFRVTAVQSLQLHYARTLDMW 239
Query: 799 RKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKS 835
+ + A+ S+ + Y CA F+
Sbjct: 240 ATALEANKDQAIAIQ-SQTVYDRYMKYLTGCAKLFRQ 275
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 116/276 (42%), Gaps = 20/276 (7%)
Query: 577 ISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEI 636
+ HYD SNE F L+LD SM YSCA F+ LE AQ K L + K + G +L+I
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79
Query: 637 GCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696
GCGWG+ V + G+TLSE Q + + E + + + +
Sbjct: 80 GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEP 137
Query: 697 YDRIISCEMIE-------AVGHDYMEEFFGCCESXXXXXXXXXXQFISVPD--QCYDEHR 747
DRI+S E G + + FF + I++PD + +
Sbjct: 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGL 197
Query: 748 LSP-------GFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRK 800
SP FI IFPGG LP ++++ +S++ VE IG +Y TL W
Sbjct: 198 TSPMSLLRFIKFILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWAD 256
Query: 801 NFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSR 836
+ + AL E + +Y C+ F+ +
Sbjct: 257 ALQAHKDEAIALKGQET-CDIYMHYLRGCSDLFRDK 291
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 605 SEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQ 664
+E LE AQ LL V G +++ GCG G + ++ GCK G+TLS Q
Sbjct: 103 AELHRLESAQAE--FLLDHLGPVGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQ 160
Query: 665 LKYAEMKVKEAGLQDHIRLYLCDYRQLP 692
++ + +E G+ DH+R +C+ P
Sbjct: 161 AEFGNRRARELGIDDHVRSRVCNMLDTP 188
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
A++G GISGL +A L KAG+ V + E D +GG T TIDG L++
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEI 56
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLD 50
R AVIG G+SGL +AY L G+ V ++E E GG ++V+ DG+ D
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWD 63
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPN- 63
++G G SGL +A L KAG+ V + E D +GG T TIDG L++ + P+
Sbjct: 12 IVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIG----GQWVSPDQ 67
Query: 64 --MMEFFESLGVDM 75
+ME + LG+ M
Sbjct: 68 TVLMELLDELGLKM 81
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC 686
V G VL++GCG G A+ + + TGI++S Q+ A + AGL + +
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 687 DYRQLP 692
D LP
Sbjct: 119 DAXDLP 124
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
A++G G SGL +A L KAG+ V + E D +GG T TIDG L++
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEI 56
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
A++G G SGL +A L KAG+ V + E D +GG T TIDG L++
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEI 56
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
A++G G SGL +A L KAG+ V + E D +GG T TIDG L++
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEI 56
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41
R ++G G+SGL +AYVLA AG +V + E + GG KT
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 5 VIGGGISGLVSAYVLAKAGV--EVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYP 62
V+GGGISGL ++Y L++A +VVL E + LGG ++V + F + R P
Sbjct: 7 VLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAI---FELGPRGIRP 63
Query: 63 ------NMMEFFESLGVDMEISDMSFSVSLDKGQ-----GCEWSSRNGMSGLFAQKKNLL 111
+ LG+D E+ + + + G + G+ GL
Sbjct: 64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFS 123
Query: 112 NPYFWQMLREIIK 124
P FW LRE+ K
Sbjct: 124 KPLFWAGLRELTK 136
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYP 62
VIGGGISGL +A +L + GV V++ E D +GG T+ + VD + T
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 75
Query: 63 NMMEFFESLGVD 74
++ + LG++
Sbjct: 76 RILRLSKELGIE 87
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYP 62
VIGGGISGL +A +L + GV V++ E D +GG T+ + VD + T
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 63 NMMEFFESLGVD 74
++ + LG++
Sbjct: 65 RILRLSKELGIE 76
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYP 62
VIGGGISGL +A +L + GV V++ E D +GG T+ + VD + T
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 63 NMMEFFESLGVD 74
++ + LG++
Sbjct: 65 RILRLSKELGIE 76
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 605 SEHEDLEVAQMRKVS------LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGI 658
SE+E +A++ ++ L+ + +++ GCG G + ++ G + G+
Sbjct: 87 SEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV 146
Query: 659 TLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692
TLS Q + + +E + DH+R +C+ P
Sbjct: 147 TLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA 675
+ +L++ V K ++L++GCG+G + I + + T ++ +K A+ +K
Sbjct: 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKST-TXADINRRAIKLAKENIKLN 97
Query: 676 GLQDH-IRLYLCDYRQLPKSNKYDRIISCEMIEA---VGHDYMEE 716
L ++ IR+ D + K KY++II+ I A V H +EE
Sbjct: 98 NLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEE 142
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVD 48
V+G G+SGL +AYVL+ AG +V + E + GG +T D D
Sbjct: 38 VVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKED 81
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNM 64
+IG G+SGL +A L G++V L E D +GG T DL MV + N
Sbjct: 283 IIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NP 341
Query: 65 MEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIK 124
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 342 MAVV-SKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL----- 386
Query: 125 FNDDVLSYLE-DLENNADIDRNETLGQFVE 153
+ SYL L+ N ++ +LGQ +E
Sbjct: 387 ---EATSYLSHQLDFNVLNNKPVSLGQALE 413
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41
V+G G+SGL +AYVLA AG +V + E + GG +T
Sbjct: 38 VVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRT 74
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685
+V G + +IGCG GT + + + TG+ LSEE L+ A+ K E H+ ++
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLADHY--EVTGVDLSEEXLEIAQEKAXET--NRHVDFWV 85
Query: 686 CDYRQLPKSNKYDRI-ISCEMI 706
D R+L D I I C+ +
Sbjct: 86 QDXRELELPEPVDAITILCDSL 107
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 217
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
N M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 218 -NPMAVV-SKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 264
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 265 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 292
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 169
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 170 NPMA--VVSKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 216
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 217 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 244
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 169 NPMA--VVSKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 215
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 216 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 169 NPMA--VVSKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 215
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 216 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 169 NPMA--VVSKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 215
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 216 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLRE 121
M S V+ME++ + Q C NG + + +K ++ F ++L
Sbjct: 169 NPMA--VVSKQVNMELAKIK--------QKCPLYEANGQA-VPKEKDEMVEQEFNRLL-- 215
Query: 122 IIKFNDDVLSYL-EDLENNADIDRNETLGQFVET 154
+ SYL L+ N ++ +LGQ +E
Sbjct: 216 ------EATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA---KTVTIDGVDLDLCFMVFNRV 59
A V+GGG SGL +A L AG +V+L E + LGG A ++ + G+ +++ +R
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 60 TYPNMMEFFESLGV 73
+P + + G+
Sbjct: 64 HHPRLAAELDRYGI 77
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA---KTVTIDGVDLDLCFMVFNRV 59
A V+GGG SGL +A L AG +V+L E + LGG A ++ + G+ +++ +R
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 60 TYPNMMEFFESLGV 73
+P + + G+
Sbjct: 64 HHPRLAAELDRYGI 77
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDG 46
M AV+GGGISGL A+ L G + VL E LGG T + G
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG 62
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 632 EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
E+L+IGCG G +++E+ + G TGI ++ E ++ AE + GL
Sbjct: 33 EILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
VIGGGISGL +A +L++ + V++ E D +GG TV
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTV 63
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
+ +IG G+SGL +A L G++V L E D +GG T DL MV +
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 217
Query: 62 PNMMEFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLF---AQKKNLLNPYFWQM 118
N M S V+ME++ + Q C NG + +K ++ F ++
Sbjct: 218 -NPMAVV-SKQVNMELAKIK--------QKCPLYEANGQADTVKVPKEKDEMVEQEFNRL 267
Query: 119 LREIIKFNDDVLSYL-EDLENNADIDRNETLGQFVE 153
L + SYL L+ N ++ +LGQ +E
Sbjct: 268 L--------EATSYLSHQLDFNVLNNKPVSLGQALE 295
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41
++G G++GL +AYVLA AG +V + E + GG +T
Sbjct: 38 IVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT 74
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEK 31
R AV+GG ISGL +A +L AGV+V +YE+
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYER 36
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
VIGGG GL + L AG + +L E D +GG + + IDG ++
Sbjct: 44 VIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEM 90
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
VIGGG GL + L AG + +L E D +GG + + IDG ++
Sbjct: 44 VIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEM 90
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDL 51
VIGGG GL + L AG + +L E D +GG + + IDG ++
Sbjct: 44 VIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEM 90
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 60/311 (19%), Positives = 130/311 (41%), Gaps = 54/311 (17%)
Query: 2 RAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLGGHAKTVTIDGVDLDL---CFMVF 56
R ++GGGI+GL +AY +A + + L E + LGG T DG ++ ++
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR 65
Query: 57 NRVTYPNMMEFFESLGVDMEI--SDMSFSVSLDKGQGCEWSSRNGMSGL-----FAQKKN 109
+ + + E++G+ ++ ++ S + LD G G + + G+ ++
Sbjct: 66 KHI----LTDLIEAIGLGEKLVRNNTSQAFILDTG-GLHPIPKGAVXGIPTDLDLFRQTT 120
Query: 110 LLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSELFQKAYLVPV 169
LL Q + +++ D L E DI LG+++ R L +K + P+
Sbjct: 121 LLTEEEKQEVADLLLHPSDSLRIPEQ-----DI----PLGEYLRPRLGDALVEK-LIEPL 170
Query: 170 CGSIWSCSSEKVMSCSAFSVLSFCRNHH-ALQIF-----GRP----------------QW 207
I++ + ++ + + + F N A +F RP Q+
Sbjct: 171 LSGIYAGNIDQXSTFATYP--QFVANEQKAGSLFEGXRLXRPLDQLPQTPQTTIKATGQF 228
Query: 208 LTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAV 267
L++ + S ++++ E+LE +++T + +GR ++ D D ++ +
Sbjct: 229 LSLETGLESLIERLEEVLERSEIRLETPL---LAISREDGRYRLKTDHGPEYADYVLLTI 285
Query: 268 HAPDALRMLGN 278
P +++L +
Sbjct: 286 PHPQVVQLLPD 296
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNM 64
VIG G GL A L AG+ V+L E+ D GG A G D V +T P+
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTV---ITDPSA 62
Query: 65 ME 66
+E
Sbjct: 63 IE 64
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVTIDGVDLDL 51
R V+G G+SG+ +A L++AG+ ++++ E D +GG G++++L
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 56
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVTIDGVDLDL 51
R V+G G+SG+ +A L++AG+ ++++ E D +GG G++++L
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 56
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 605 SEHEDLEVAQMRKV--SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLS 661
SE E L +++ + LL G +VLE GCG G + + K + T I +S
Sbjct: 11 SEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 662 EEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIE 707
E L+ A ++ G+++ ++ + LP + + +D I C ++E
Sbjct: 71 PESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLE 116
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 634 LEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693
++IG G G L+I + KQ+ + S+ + A + +A L D I++ D +P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 694 SNKY-DRIIS 702
+ Y D I+S
Sbjct: 108 EDNYADLIVS 117
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVE-VVLYEKEDSLGGHAKTVT 43
+ +IG GI+GL +A L + G++ ++ E D +GG +TVT
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVE-VVLYEKEDSLGGHAKTVT 43
+ +IG GI+GL +A L + G++ ++ E D +GG +TVT
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVE-VVLYEKEDSLGGHAKTVT 43
+ +IG GI+GL +A L + G++ ++ E D +GG +TVT
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVE-VVLYEKEDSLGGHAKTVT 43
+ +IG GI+GL +A L + G++ ++ E D +GG +TVT
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVT 43
+ +IG GI+GL +A L + G+ + ++ E D +GG +TVT
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDL 49
+ VIG G+ GL+SA L+KAG EV ++E+ GG ++ G L
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQL 49
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYE--KEDSLGGHAKTVTIDGV 47
M+A VIG GI GL +A L ++G++ +YE KE G A +V +GV
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGV 72
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 10 AIIGGGPVGLTXAKLLQQNGIDVSVYERDND 40
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 4 AVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 31 AIIGGGPVGLTXAKLLQQNGIDVSVYERDND 61
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685
R +KG L++G G+G A +V++ G + ++ Q K E +AGL D+I +
Sbjct: 82 RQAKG---LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138
Query: 686 CDYRQLP-KSNKYDRIIS 702
+ ++P + N YD I S
Sbjct: 139 GSFLEIPCEDNSYDFIWS 156
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLC 52
V+GGG +GL SA+ L KAG +V + E GG T + DL
Sbjct: 16 VLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLS 63
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37
VIGGG SGL + Y L ++G+ V+ + E S GG
Sbjct: 8 VIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 8 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 40
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34
A+IGGG GL A +L + G++V +YE+++
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 5 VIGGGISGLVSAYVLAKA------GVEVVLYEKEDSLGGHAKTVTIDG 46
+IGGGI+GL +A+ + K +E+ L E +GG +TV DG
Sbjct: 10 IIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG 57
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE-DSLGGHAKT 41
R ++G GI+GLV+ +L +AG +V + E + +GG KT
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
Length = 545
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37
+ A VIG G++G+ A+++ +AG++V+ E + +GG
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 630 GHEVLEIGCGWGTLAIEI-VKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY 688
G VL+ CG GT+ IE+ +++ + GI + L AEM AG+ D I+ D
Sbjct: 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA 277
Query: 689 RQLPK 693
QL +
Sbjct: 278 TQLSQ 282
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 49 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 82
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 607 HEDLEVAQMRKVSL---LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEE 663
HE++ +R +S +IQ + K VL++GCG G L++ K G+ +S
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-S 71
Query: 664 QLKYAEMKVKEAGLQDHIRL 683
++ A+ V+ G D I L
Sbjct: 72 IIEMAKELVELNGFSDKITL 91
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
RA V GGG +GL +A L + G +V L+EK L
Sbjct: 49 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 82
>pdb|2L06|A Chain A, Solution Nmr Structure Of The Pbs Linker Polypeptide
Domain (Fragment 254-400) Of Phycobilisome Linker
Protein Apce From Synechocystis Sp. Pcc 6803. Northeast
Structural Genomics Consortium Target Sgr209c
Length = 155
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 93 EWSSRNGMSGLFAQKKNLLNPYFWQML-REIIKFNDDVLSYLEDLENNADIDRNETLGQF 151
+++ + G+S L +K ++ + Q+ R+I K +SYLE N DI ++ +F
Sbjct: 13 KYAMKPGLSAL--EKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDI----SMKEF 66
Query: 152 VETRGYSELFQKAYLVPVCGS 172
V S L++K + P S
Sbjct: 67 VRRLAKSPLYRKQFFEPFINS 87
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDH 680
++Q K VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 33 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 91
Query: 681 IRLYLCDYRQLPKSNKYDRIISCEM 705
I + ++ + D IIS M
Sbjct: 92 IVVIPGKVEEVSLPEQVDIIISEPM 116
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDH 680
++Q K VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 42 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 100
Query: 681 IRLYLCDYRQLPKSNKYDRIISCEM 705
I + ++ + D IIS M
Sbjct: 101 IVVIPGKVEEVSLPEQVDIIISEPM 125
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDH 680
++Q K VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 150 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 208
Query: 681 IRLYLCDYRQLPKSNKYDRIISCEM 705
I + ++ + D IIS M
Sbjct: 209 IVVIPGKVEEVSLPEQVDIIISEPM 233
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDL 49
++G G+ G V A L K +V++ EK + +GG+A T +G+ +
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQI 50
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 633 VLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692
VL++GCG G L+ Q G + + ++AE+ VK L D I + ++
Sbjct: 50 VLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS 108
Query: 693 KSNKYDRIISCEM 705
+ D IIS M
Sbjct: 109 LPEQVDIIISEPM 121
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDH 680
++Q K VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 37 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 95
Query: 681 IRLYLCDYRQLPKSNKYDRIISCEM 705
I + ++ + D IIS M
Sbjct: 96 IVVIPGKVEEVSLPEQVDIIISEPM 120
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 2 RAAVIGGGISGLVSAYVL--AKAGVEVVLYEKEDSLGG 37
+ A+IG G SGLV+A L KA +V L+E+ S GG
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 47
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 2 RAAVIGGGISGLVSAYVL--AKAGVEVVLYEKEDSLGG 37
+ A+IG G SGLV+A L KA +V L+E+ S GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>pdb|1PNS|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|I Chain I, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|I Chain I, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|I Chain I, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|I Chain I, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|I Chain I, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|I Chain I, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|2R1G|G Chain G, Coordinates Of The Thermus Thermophilus 30s Components
Neighboring Rbfa As Obtained By Fitting Into The Cryo-em
Map Of A 30s-rbfa Complex
pdb|3FIC|I Chain I, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|3MR8|I Chain I, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|I Chain I, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|I Chain I, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|I Chain I, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|I Chain I, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|I Chain I, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 127
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 239 RSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFE 283
R L+ G G++ + G DF + G + AV A + LR + F+
Sbjct: 15 RVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFD 59
>pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|I Chain I, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|L Chain L, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1I94|I Chain I, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1JGO|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|L Chain L, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|I Chain I, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|I Chain I, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|I Chain I, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|I Chain I, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|L Chain L, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|I Chain I, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|I Chain I, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|I Chain I, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|I Chain I, 30s Ribosome + Designer Antibiotic
pdb|2HHH|I Chain I, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2E5L|I Chain I, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
pdb|2OW8|JJ Chain j, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UXC|I Chain I, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|I Chain I, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|I Chain I, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|JJ Chain j, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2VQE|I Chain I, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|I Chain I, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|I Chain I, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|I Chain I, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|I Chain I, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|I Chain I, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2ZM6|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
pdb|2WH1|I Chain I, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|I Chain I, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|2X9R|I Chain I, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|I Chain I, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|I Chain I, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|I Chain I, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|I Chain I, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|3ZVO|I Chain I, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|I Chain I, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|I Chain I, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|4ABR|I Chain I, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4AQY|I Chain I, Structure Of Ribosome-Apramycin Complexes
Length = 128
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 239 RSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFE 283
R L+ G G++ + G DF + G + AV A + LR + F+
Sbjct: 16 RVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFD 60
>pdb|3OSJ|A Chain A, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|B Chain B, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|C Chain C, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|D Chain D, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
Length = 147
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 93 EWSSRNGMSGLFAQKKNLLNPYFWQML-REIIKFNDDVLSYLEDLENNADIDRNETLGQF 151
+++ + G+S L +K ++ + Q+ R+I K +SYLE N DI E F
Sbjct: 13 KYAXKPGLSAL--EKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISXKE----F 66
Query: 152 VETRGYSELFQKAYLVPVCGS 172
V S L++K + P S
Sbjct: 67 VRRLAKSPLYRKQFFEPFINS 87
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad And Uric Acid
Length = 407
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYE--KEDSLGGHAKTVTIDGV 47
+A VIG GI GL +A L ++G++ +YE KE G A +V +GV
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGV 72
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 5/36 (13%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40
V+GGG SGL +A LA+AG++V++ + GG +K
Sbjct: 6 VVGGGPSGLSAALFLARAGLKVLVLD-----GGRSK 36
>pdb|2HGI|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|L Chain L, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2UU9|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|3HUW|I Chain I, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|I Chain I, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|I Chain I, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|I Chain I, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|I Chain I, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|I Chain I, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|II Chain i, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|II Chain i, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|II Chain i, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|II Chain i, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|I Chain I, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|I Chain I, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|I Chain I, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|I Chain I, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|L Chain L, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|L Chain L, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|L Chain L, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|L Chain L, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2XSY|I Chain I, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|I Chain I, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|I Chain I, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|I Chain I, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|I Chain I, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|I Chain I, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|I Chain I, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|I Chain I, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|I Chain I, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|I Chain I, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3TVF|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|L Chain L, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|L Chain L, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4DH9|I Chain I, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|I Chain I, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|I Chain I, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|I Chain I, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|I Chain I, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|I Chain I, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|I Chain I, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|I Chain I, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4DR1|I Chain I, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|I Chain I, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|L Chain L, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|L Chain L, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|L Chain L, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|L Chain L, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|I Chain I, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 128
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 239 RSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFE 283
R L+ G G++ + G DF + G + AV A + LR + F+
Sbjct: 16 RVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFD 60
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA 280
V + L + G +I+ G + ++ G GR+ R F D A H DA + NQ
Sbjct: 682 VAKRLAARGIKIRPGTVISYIVLKGPGRVGDRAIPF----DEFDPAKHRYDAEYYIENQV 737
Query: 281 TFEEKRVLGAFQYVYSDIFLHRDKNFMPRNPAAWSAW 317
+R+L AF Y D+ + K A AW
Sbjct: 738 LPAVERILRAFGYRKEDLRYQKTKQ------AGLGAW 768
>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
Length = 301
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 633 VLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ 690
+L+ G G + I++ GC+ GI + E L+ AE K+KE D + L+ YR+
Sbjct: 30 ILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE--FSDRVSLFKVSYRE 86
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEM----KVKEAGLQDHI---RL 683
H VL++ CG G +I +V++ G T + S++ LKYA + KE +
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116
Query: 684 YLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCY 743
+L + +P + +D +I C + F +PD
Sbjct: 117 WLTLDKDVPAGDGFDAVI------------------CLGN----------SFAHLPDSKG 148
Query: 744 D--EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQT 794
D EHRL+ I + PGG L +R + S+ C +NI YY++
Sbjct: 149 DQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTG--CAPPGKNI---YYKS 196
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEM----KVKEAGLQDHI---RL 683
H VL++ CG G +I +V++ G T + S++ LKYA + KE +
Sbjct: 59 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117
Query: 684 YLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESXXXXXXXXXXQFISVPDQCY 743
+L + +P + +D +I C + F +PD
Sbjct: 118 WLTLDKDVPAGDGFDAVI------------------CLGN----------SFAHLPDSKG 149
Query: 744 D--EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQT 794
D EHRL+ I + PGG L +R + S+ C +NI YY++
Sbjct: 150 DQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTG--CAPPGKNI---YYKS 197
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35
VIGG SG +AY LAK G ++ LY L
Sbjct: 171 VIGGNESGFDAAYQLAKNGSDIALYTSTTGL 201
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEK 31
+ A+IGGG +G V+ L K G +V +YE+
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 668
H VL++ CG G +I +V++ G T + S++ LKYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 26/93 (27%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
R VIGGG GL A KA + V L LD V RVT
Sbjct: 150 RLVVIGGGYIGLEVAATAIKANMHVTL--------------------LDTAARVLERVTA 189
Query: 62 PNMMEFFESL----GVDMEISDM--SFSVSLDK 88
P + F+E L GVD+ F +S D+
Sbjct: 190 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 222
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38
R V+G G SGL +A L G +VVL E LGG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR 429
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA 280
V + L + G +I+ G + ++ G GRI R F D A H DA + NQ
Sbjct: 682 VAKRLAARGIKIRPGTVISYIVLKGSGRIGDRAIPF----DEFDPAKHKYDAEYYIENQV 737
Query: 281 TFEEKRVLGAFQYVYSDI 298
+R+L AF Y D+
Sbjct: 738 LPAVERILRAFGYRKEDL 755
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA 280
V + L + G +I+ G + ++ G GRI R F D A H DA + NQ
Sbjct: 682 VAKRLAARGIKIRPGTVISYIVLKGSGRIGDRAIPF----DEFDPAKHKYDAEYYIENQV 737
Query: 281 TFEEKRVLGAFQYVYSDI 298
+R+L AF Y D+
Sbjct: 738 LPAVERILRAFGYRKEDL 755
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA 280
V + L + G +I+ G + ++ G GRI R F D A H DA + NQ
Sbjct: 682 VAKRLAARGIKIRPGTVISYIVLKGSGRIGDRAIPF----DEFDPAKHKYDAEYYIENQV 737
Query: 281 TFEEKRVLGAFQYVYSDI 298
+R+L AF Y D+
Sbjct: 738 LPAVERILRAFGYRKEDL 755
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA 280
V + L + G +I+ G + ++ G GRI R F D A H DA + NQ
Sbjct: 682 VAKRLAARGIKIRPGTVISYIVLKGSGRIGDRAIPF----DEFDPAKHKYDAEYYIENQV 737
Query: 281 TFEEKRVLGAFQYVYSDI 298
+R+L AF Y D+
Sbjct: 738 LPAVERILRAFGYRKEDL 755
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 26/93 (27%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTY 61
R VIGGG GL A KA + V L LD V RVT
Sbjct: 151 RLVVIGGGYIGLEVAATAIKANMHVTL--------------------LDTAARVLERVTA 190
Query: 62 PNMMEFFESL----GVDMEISDM--SFSVSLDK 88
P + F+E L GVD+ F +S D+
Sbjct: 191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 223
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 632 EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691
+ L++ CG G L + + + + LS+E L AE K + GL+ RL D L
Sbjct: 40 DYLDLACGTGNLTENLCPKFKNTW-AVDLSQEXLSEAENKFRSQGLKP--RLACQDISNL 96
Query: 692 PKSNKYDRIISC 703
+ K+D I C
Sbjct: 97 NINRKFDLITCC 108
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCK--YTGITLS 661
+V G ++LEIGCG G L+ + Q G TGI ++
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 612 VAQMRKVSLLIQKARVSKGHEVLEIGCGWG---TLAIEIVKQTGCKYTGITLSEEQLKYA 668
V+ V+++++ A + G +LE+G G G L EIVK YT I E +++A
Sbjct: 74 VSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTD--VYT-IERIPELVEFA 130
Query: 669 EMKVKEAGLQDHIRLYLCD-YRQLPKSNKYDRII 701
+ ++ AG+++ + + L D + P YD II
Sbjct: 131 KRNLERAGVKN-VHVILGDGSKGFPPKAPYDVII 163
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37
VIG G G V+A A+ G++V + EKE +LGG
Sbjct: 6 VIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE--DSLGGHAKTVTIDGVDLDL 51
+ A+IG G SGL+ +L KAG++ V+ E++ D + G K ++ +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIKAGVLEQGMVDL 55
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 632 EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691
EVL+IGC G L I K+ G + +GI E + A+ K+ DH+ L +
Sbjct: 35 EVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETXDX 87
Query: 692 P-KSNKYDRIISCEMIE 707
P + ++D +I +++E
Sbjct: 88 PYEEEQFDCVIFGDVLE 104
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 613 AQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCK--YTGITLSEEQLKYAEM 670
+Q ++L ++ + KG VLEIG G G A + + G K + S + + A+
Sbjct: 59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 671 KVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAV 709
V+ G+++ I + Y +P+ + YD I ++ V
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEV 157
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 627 VSKGHEVLEIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLY 684
V K EVL++GC G+GT + +TG K G+ +SE ++ K KE G +
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKL---SRTGYKAVGVDISEVXIQ----KGKERGEGPDLSFI 103
Query: 685 LCDYRQLPKSN-KYDRIISCEMIE 707
D LP N +++ I + +E
Sbjct: 104 KGDLSSLPFENEQFEAIXAINSLE 127
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE--DSLGGHAKTVTIDGVDLDL 51
+ A+IG G SGL+ +L KAG++ V+ E++ D + G + ++ +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDEVLGRIRAGVLEQGMVDL 55
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 607 HEDLEVAQMRKVS---LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEE 663
HE++ ++R S + Q + K VL++GCG G L++ K K G+ SE
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE- 97
Query: 664 QLKYAEMK-VKEAGLQDHIRL 683
+ Y M ++ L+D I L
Sbjct: 98 -ILYQAMDIIRLNKLEDTITL 117
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKE 32
+ A+IG G SGL+ +L KAG++ V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 3 AAVIGGGISGLVSAYVLAKAGVEVVLYE 30
A VIGGG GL +A VL K GV V L E
Sbjct: 155 AVVIGGGYIGLEAAAVLTKFGVNVTLLE 182
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT 43
++G G SG +A VL ++G V L + + +GGH V
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA 432
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 633 VLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKV 672
VL++GCG+G I + K GI LSE L A+ K
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT 43
++G G SG +A VL ++G V L + + +GGH V
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA 432
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39
++G G +G V A LA +G V++ ++ +GG+A
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNA 68
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNM 64
VIG G G V+A A+ G + V EK ++LGG T V + N Y +M
Sbjct: 11 VIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG-----TCLNVGCIPSKALLNNSHYYHM 65
Query: 65 M--EFFESLGVDMEISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKK 108
+ F S G++M ++ +++ + G++ LF Q K
Sbjct: 66 AHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNK 111
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
Length = 520
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
Length = 519
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 45
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTV 42
ISG+ +A +L +G+ VV+ E D +GG T+
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 45
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 613 AQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKV 672
A+ +++L + G +VL++G G G LAI ++ G K G+ + L AE
Sbjct: 104 AETTRLALKALARHLRPGDKVLDLGTGSGVLAIA-AEKLGGKALGVDIDPMVLPQAEANA 162
Query: 673 KEAGLQ 678
K G++
Sbjct: 163 KRNGVR 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,851,178
Number of Sequences: 62578
Number of extensions: 1079841
Number of successful extensions: 2498
Number of sequences better than 100.0: 208
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2318
Number of HSP's gapped (non-prelim): 222
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)