Query 002928
Match_columns 864
No_of_seqs 667 out of 5950
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 13:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11705 cyclopropane fatty ac 100.0 8E-60 1.7E-64 512.8 41.7 342 477-852 35-377 (383)
2 COG2230 Cfa Cyclopropane fatty 100.0 5.4E-61 1.2E-65 482.5 29.7 278 563-847 6-283 (283)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.6E-59 5.7E-64 483.2 26.5 272 568-843 1-273 (273)
4 COG2907 Predicted NAD/FAD-bind 100.0 3.5E-49 7.6E-54 392.8 31.5 409 1-422 9-426 (447)
5 COG1232 HemY Protoporphyrinoge 100.0 1.9E-32 4.1E-37 297.3 27.4 394 1-417 1-443 (444)
6 TIGR00562 proto_IX_ox protopor 100.0 4.1E-31 8.8E-36 302.7 31.5 395 1-418 3-458 (462)
7 PRK12416 protoporphyrinogen ox 100.0 2.4E-31 5.3E-36 303.8 29.0 402 1-418 2-459 (463)
8 PRK11883 protoporphyrinogen ox 100.0 1.1E-30 2.5E-35 298.5 30.2 402 1-418 1-450 (451)
9 PLN02576 protoporphyrinogen ox 100.0 4E-30 8.7E-35 296.6 29.4 397 1-419 13-486 (496)
10 PRK07233 hypothetical protein; 100.0 1.8E-28 3.9E-33 279.1 29.2 395 2-419 1-430 (434)
11 PLN02612 phytoene desaturase 100.0 2.5E-28 5.4E-33 281.8 28.6 412 1-420 94-548 (567)
12 PRK07208 hypothetical protein; 100.0 2E-27 4.3E-32 273.0 35.7 399 1-419 5-460 (479)
13 PLN02268 probable polyamine ox 100.0 2.7E-28 5.8E-33 276.7 26.4 384 1-418 1-432 (435)
14 TIGR02732 zeta_caro_desat caro 100.0 7.1E-28 1.5E-32 273.0 28.8 407 2-417 1-474 (474)
15 TIGR02731 phytoene_desat phyto 100.0 1.1E-27 2.4E-32 272.9 30.4 405 2-417 1-453 (453)
16 PLN02487 zeta-carotene desatur 100.0 9.2E-28 2E-32 272.9 29.2 413 1-420 76-553 (569)
17 smart00828 PKS_MT Methyltransf 100.0 1.5E-27 3.3E-32 244.8 21.6 205 631-851 1-206 (224)
18 PLN02244 tocopherol O-methyltr 100.0 1.3E-26 2.8E-31 250.5 29.8 272 568-849 52-340 (340)
19 PLN02529 lysine-specific histo 100.0 2.7E-26 5.8E-31 265.5 32.2 385 1-420 161-598 (738)
20 PLN02568 polyamine oxidase 99.9 1.4E-25 3E-30 255.6 30.7 297 1-309 6-342 (539)
21 PLN02328 lysine-specific histo 99.9 1.2E-24 2.5E-29 252.6 33.8 388 1-420 239-679 (808)
22 PLN02676 polyamine oxidase 99.9 7.7E-25 1.7E-29 248.2 29.9 388 1-418 27-471 (487)
23 PLN03000 amine oxidase 99.9 1.2E-24 2.6E-29 251.8 28.7 383 1-420 185-623 (881)
24 KOG1276 Protoporphyrinogen oxi 99.9 8.1E-25 1.8E-29 225.8 23.1 402 1-417 12-490 (491)
25 TIGR02733 desat_CrtD C-3',4' d 99.9 9.3E-24 2E-28 243.0 32.3 294 1-304 2-330 (492)
26 TIGR03467 HpnE squalene-associ 99.9 4.5E-24 9.7E-29 241.9 27.7 384 14-417 1-418 (419)
27 COG1231 Monoamine oxidase [Ami 99.9 9.8E-24 2.1E-28 222.8 23.6 395 1-418 8-445 (450)
28 TIGR02734 crtI_fam phytoene de 99.9 4E-23 8.6E-28 238.5 30.9 277 3-295 1-302 (502)
29 KOG0685 Flavin-containing amin 99.9 9E-24 1.9E-28 222.3 21.8 276 2-310 23-330 (498)
30 PLN02976 amine oxidase 99.9 6E-23 1.3E-27 242.5 29.0 382 1-419 694-1185(1713)
31 PTZ00098 phosphoethanolamine N 99.9 1.7E-22 3.6E-27 210.5 27.0 222 617-848 40-263 (263)
32 KOG0029 Amine oxidase [Seconda 99.9 3.8E-23 8.1E-28 231.0 20.5 383 1-418 16-457 (501)
33 TIGR02730 carot_isom carotene 99.9 7.5E-22 1.6E-26 226.7 30.7 294 1-308 1-327 (493)
34 COG2226 UbiE Methylase involve 99.9 3.7E-23 8E-28 206.0 17.0 193 569-787 12-225 (238)
35 COG3380 Predicted NAD/FAD-depe 99.9 3.6E-23 7.9E-28 201.0 12.0 298 2-418 3-329 (331)
36 PF01593 Amino_oxidase: Flavin 99.9 1.5E-23 3.3E-28 239.2 8.2 395 10-417 1-450 (450)
37 PF01209 Ubie_methyltran: ubiE 99.9 4.6E-23 1E-27 208.9 10.6 150 568-741 7-159 (233)
38 PLN02336 phosphoethanolamine N 99.9 4.3E-21 9.2E-26 219.4 27.5 219 618-848 255-475 (475)
39 COG1233 Phytoene dehydrogenase 99.9 3.8E-20 8.2E-25 210.5 24.3 259 1-277 4-287 (487)
40 PLN02233 ubiquinone biosynthes 99.8 6.8E-20 1.5E-24 190.7 18.6 164 620-788 64-250 (261)
41 COG3349 Uncharacterized conser 99.8 5.8E-20 1.3E-24 198.5 16.8 412 1-420 1-463 (485)
42 TIGR03329 Phn_aa_oxid putative 99.8 2.2E-20 4.8E-25 212.4 12.3 197 214-422 182-397 (460)
43 PLN02396 hexaprenyldihydroxybe 99.8 9E-20 1.9E-24 192.9 14.1 165 628-798 130-299 (322)
44 TIGR02752 MenG_heptapren 2-hep 99.8 3.9E-19 8.4E-24 183.4 16.5 193 569-788 6-220 (231)
45 KOG1540 Ubiquinone biosynthesi 99.8 6.8E-19 1.5E-23 169.9 14.8 148 570-740 62-219 (296)
46 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.1E-19 2.4E-24 176.7 9.2 162 628-798 58-225 (243)
47 PRK11036 putative S-adenosyl-L 99.8 2.5E-18 5.4E-23 179.5 18.6 168 615-788 31-209 (255)
48 KOG1270 Methyltransferases [Co 99.8 9.7E-19 2.1E-23 170.5 9.6 151 630-786 90-249 (282)
49 PRK14103 trans-aconitate 2-met 99.8 2E-17 4.3E-22 172.8 19.2 162 614-786 14-184 (255)
50 TIGR00452 methyltransferase, p 99.8 4.2E-17 9.2E-22 171.7 20.2 184 611-799 103-288 (314)
51 PRK15068 tRNA mo(5)U34 methylt 99.7 3E-17 6.6E-22 175.4 18.4 170 614-789 107-277 (322)
52 PRK11207 tellurite resistance 99.7 8.7E-17 1.9E-21 160.3 19.0 150 620-786 21-170 (197)
53 PF12847 Methyltransf_18: Meth 99.7 4.8E-17 1E-21 147.2 14.1 107 629-735 1-111 (112)
54 PRK01683 trans-aconitate 2-met 99.7 1.7E-16 3.7E-21 166.5 19.0 165 612-785 14-186 (258)
55 TIGR00031 UDP-GALP_mutase UDP- 99.7 1.3E-15 2.7E-20 165.1 24.8 365 1-417 2-376 (377)
56 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.3E-16 2.9E-21 169.1 15.9 156 619-791 102-261 (340)
57 TIGR00477 tehB tellurite resis 99.7 4.9E-16 1.1E-20 154.7 18.0 149 620-786 21-169 (195)
58 PTZ00363 rab-GDP dissociation 99.7 1.2E-15 2.7E-20 169.2 21.9 251 2-267 6-286 (443)
59 PRK10258 biotin biosynthesis p 99.7 6.5E-16 1.4E-20 161.3 17.6 165 613-792 26-192 (251)
60 PF08241 Methyltransf_11: Meth 99.7 2.1E-16 4.4E-21 138.3 10.4 94 634-733 1-95 (95)
61 PRK00216 ubiE ubiquinone/menaq 99.7 9.5E-16 2.1E-20 159.4 17.3 168 617-789 39-228 (239)
62 PRK15451 tRNA cmo(5)U34 methyl 99.7 5.8E-16 1.3E-20 160.5 15.1 111 627-738 54-167 (247)
63 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 9.2E-16 2E-20 157.6 16.3 189 572-789 3-213 (223)
64 PRK05785 hypothetical protein; 99.7 4.8E-16 1E-20 158.1 13.3 140 569-740 10-150 (226)
65 PRK08317 hypothetical protein; 99.7 1.1E-14 2.3E-19 151.6 23.9 166 618-788 8-178 (241)
66 PF03848 TehB: Tellurite resis 99.7 3.1E-15 6.8E-20 144.5 17.8 147 620-784 21-167 (192)
67 PRK11873 arsM arsenite S-adeno 99.7 1.6E-15 3.5E-20 160.3 16.6 155 625-786 73-230 (272)
68 PF13847 Methyltransf_31: Meth 99.7 1E-15 2.3E-20 146.5 13.5 107 628-737 2-112 (152)
69 PRK07580 Mg-protoporphyrin IX 99.7 2.4E-15 5.1E-20 155.3 16.7 214 569-800 5-229 (230)
70 TIGR02021 BchM-ChlM magnesium 99.6 2.5E-15 5.4E-20 153.3 16.4 167 616-793 40-213 (219)
71 PRK00711 D-amino acid dehydrog 99.6 2.5E-14 5.4E-19 161.7 24.5 196 214-423 200-406 (416)
72 TIGR00740 methyltransferase, p 99.6 2.4E-15 5.3E-20 155.5 14.8 111 628-739 52-165 (239)
73 TIGR02716 C20_methyl_CrtF C-20 99.6 7.6E-15 1.6E-19 157.7 18.7 160 618-784 138-304 (306)
74 PF13489 Methyltransf_23: Meth 99.6 1.3E-15 2.8E-20 147.8 10.5 137 627-783 20-160 (161)
75 PRK12335 tellurite resistance 99.6 1.4E-14 3.1E-19 153.5 19.1 139 629-785 120-258 (287)
76 PF08003 Methyltransf_9: Prote 99.6 1E-14 2.2E-19 147.4 16.5 167 616-788 102-269 (315)
77 PRK00107 gidB 16S rRNA methylt 99.6 2.1E-14 4.6E-19 140.3 17.6 102 627-735 43-145 (187)
78 TIGR03840 TMPT_Se_Te thiopurin 99.6 3.6E-14 7.8E-19 142.1 19.4 152 620-788 25-189 (213)
79 KOG4254 Phytoene desaturase [C 99.6 3.7E-14 8E-19 147.9 18.0 81 204-284 253-335 (561)
80 PRK12409 D-amino acid dehydrog 99.6 2.3E-14 5E-19 161.5 18.1 202 206-420 185-407 (410)
81 KOG4300 Predicted methyltransf 99.6 5.7E-15 1.2E-19 138.1 10.7 112 625-739 72-186 (252)
82 COG4106 Tam Trans-aconitate me 99.6 9.4E-15 2E-19 137.9 12.0 209 615-834 16-235 (257)
83 TIGR02469 CbiT precorrin-6Y C5 99.6 3E-14 6.5E-19 131.5 15.4 115 616-736 6-123 (124)
84 TIGR00138 gidB 16S rRNA methyl 99.6 3.7E-14 8E-19 138.6 16.4 99 629-734 42-141 (181)
85 PF01266 DAO: FAD dependent ox 99.6 1.8E-15 3.8E-20 167.6 7.8 198 206-415 135-358 (358)
86 PRK05134 bifunctional 3-demeth 99.6 4.1E-14 8.8E-19 146.1 17.1 181 612-800 31-217 (233)
87 PLN02585 magnesium protoporphy 99.6 2.1E-14 4.6E-19 151.7 15.2 161 618-790 130-303 (315)
88 PF13649 Methyltransf_25: Meth 99.6 5.7E-15 1.2E-19 130.5 8.6 95 633-729 1-101 (101)
89 PRK13255 thiopurine S-methyltr 99.6 1.5E-13 3.3E-18 138.2 19.2 149 619-787 27-191 (218)
90 PRK13977 myosin-cross-reactive 99.6 1.5E-13 3.2E-18 153.6 20.3 251 1-277 23-299 (576)
91 TIGR01373 soxB sarcosine oxida 99.6 1.9E-13 4E-18 153.9 21.3 191 215-421 183-387 (407)
92 COG0665 DadA Glycine/D-amino a 99.6 2.5E-14 5.3E-19 160.3 13.3 201 215-425 156-373 (387)
93 PRK11259 solA N-methyltryptoph 99.5 1.1E-13 2.4E-18 154.3 18.2 192 215-422 149-363 (376)
94 TIGR01377 soxA_mon sarcosine o 99.5 1.9E-13 4.1E-18 152.6 20.0 56 215-271 145-200 (380)
95 PRK08287 cobalt-precorrin-6Y C 99.5 1.6E-13 3.5E-18 136.2 17.1 112 618-736 20-132 (187)
96 TIGR03587 Pse_Me-ase pseudamin 99.5 8.5E-14 1.8E-18 138.9 14.5 121 609-740 25-147 (204)
97 PRK13944 protein-L-isoaspartat 99.5 8.4E-14 1.8E-18 139.8 14.6 112 616-735 59-173 (205)
98 PF05401 NodS: Nodulation prot 99.5 4.4E-14 9.5E-19 134.1 11.5 117 616-736 29-147 (201)
99 TIGR02072 BioC biotin biosynth 99.5 1.2E-13 2.5E-18 143.7 15.3 156 613-785 15-175 (240)
100 KOG1271 Methyltransferases [Ge 99.5 1E-13 2.3E-18 126.9 12.5 126 612-737 46-183 (227)
101 PRK01747 mnmC bifunctional tRN 99.5 3.5E-13 7.5E-18 160.3 20.8 65 206-271 396-463 (662)
102 TIGR00537 hemK_rel_arch HemK-r 99.5 3.1E-13 6.6E-18 133.2 16.9 138 621-788 11-167 (179)
103 PF13450 NAD_binding_8: NAD(P) 99.5 2.6E-14 5.6E-19 114.7 7.4 67 5-71 1-68 (68)
104 PRK06922 hypothetical protein; 99.5 7.7E-14 1.7E-18 156.1 13.7 113 625-739 414-541 (677)
105 PF08242 Methyltransf_12: Meth 99.5 2.9E-15 6.3E-20 132.0 1.5 95 634-731 1-99 (99)
106 PRK00377 cbiT cobalt-precorrin 99.5 4.4E-13 9.4E-18 134.2 16.8 111 620-735 31-145 (198)
107 TIGR00080 pimt protein-L-isoas 99.5 1.2E-13 2.7E-18 140.1 13.0 111 616-735 64-177 (215)
108 TIGR01983 UbiG ubiquinone bios 99.5 2.4E-13 5.3E-18 139.6 15.1 155 629-788 45-205 (224)
109 PF05175 MTS: Methyltransferas 99.5 4.8E-13 1E-17 130.1 16.0 128 600-734 8-139 (170)
110 smart00138 MeTrc Methyltransfe 99.5 1.8E-13 3.9E-18 142.4 13.6 132 603-734 73-241 (264)
111 PRK06202 hypothetical protein; 99.5 2.1E-13 4.5E-18 140.4 13.8 154 627-788 58-224 (232)
112 PRK13942 protein-L-isoaspartat 99.5 3.5E-13 7.6E-18 135.9 14.1 111 615-734 62-175 (212)
113 PRK00517 prmA ribosomal protei 99.5 5.9E-13 1.3E-17 138.2 15.9 156 585-788 85-240 (250)
114 PRK15001 SAM-dependent 23S rib 99.5 7.6E-13 1.7E-17 142.7 16.1 131 599-735 204-340 (378)
115 COG2242 CobL Precorrin-6B meth 99.5 2.1E-12 4.5E-17 121.8 16.9 116 616-738 21-138 (187)
116 PLN02336 phosphoethanolamine N 99.5 3.9E-13 8.5E-18 153.9 14.7 119 616-738 24-145 (475)
117 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.6E-17 132.1 16.0 143 623-789 66-213 (226)
118 TIGR00406 prmA ribosomal prote 99.5 1.7E-12 3.6E-17 137.5 17.5 133 588-736 128-260 (288)
119 COG4123 Predicted O-methyltran 99.5 6E-13 1.3E-17 132.8 12.6 114 620-733 35-168 (248)
120 PRK14967 putative methyltransf 99.4 4E-12 8.8E-17 129.8 19.1 146 618-791 25-189 (223)
121 PLN03075 nicotianamine synthas 99.4 8.2E-13 1.8E-17 136.1 13.6 113 622-735 116-233 (296)
122 COG2518 Pcm Protein-L-isoaspar 99.4 1.2E-12 2.6E-17 126.4 13.5 110 616-735 59-169 (209)
123 COG2081 Predicted flavoprotein 99.4 3.7E-12 8E-17 133.3 17.8 59 212-270 108-166 (408)
124 PF07021 MetW: Methionine bios 99.4 2.8E-12 6E-17 121.8 15.3 148 627-791 11-172 (193)
125 PRK00121 trmB tRNA (guanine-N( 99.4 5.1E-13 1.1E-17 133.7 11.0 106 629-735 40-156 (202)
126 COG2264 PrmA Ribosomal protein 99.4 5.3E-12 1.2E-16 129.5 16.8 158 589-788 132-290 (300)
127 TIGR02081 metW methionine bios 99.4 1.9E-12 4.2E-17 129.2 12.4 153 619-787 5-168 (194)
128 PRK14968 putative methyltransf 99.4 1.1E-11 2.3E-16 123.6 17.0 115 620-735 14-148 (188)
129 PRK09489 rsmC 16S ribosomal RN 99.4 6E-12 1.3E-16 135.3 15.9 127 600-735 173-303 (342)
130 TIGR01177 conserved hypothetic 99.4 3.2E-12 7E-17 138.3 13.8 116 618-735 171-294 (329)
131 COG2813 RsmC 16S RNA G1207 met 99.4 7.6E-12 1.6E-16 127.3 14.7 130 597-735 132-266 (300)
132 KOG1541 Predicted protein carb 99.4 3.8E-12 8.2E-17 120.6 11.2 122 609-737 28-162 (270)
133 COG4976 Predicted methyltransf 99.4 4.5E-13 9.7E-18 127.5 4.9 181 574-788 84-267 (287)
134 PF13659 Methyltransf_26: Meth 99.4 2.1E-12 4.6E-17 117.7 9.3 106 630-735 1-115 (117)
135 PRK07402 precorrin-6B methylas 99.4 1E-11 2.2E-16 124.2 15.0 114 616-736 27-143 (196)
136 TIGR03364 HpnW_proposed FAD de 99.4 7.6E-12 1.6E-16 138.8 15.1 53 215-272 145-198 (365)
137 PRK13256 thiopurine S-methyltr 99.4 3.3E-11 7.2E-16 120.2 17.9 115 622-737 36-165 (226)
138 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.6E-12 5.6E-17 128.0 9.9 106 629-735 16-132 (194)
139 PF01135 PCMT: Protein-L-isoas 99.4 3.8E-12 8.2E-17 126.4 10.9 112 615-735 58-172 (209)
140 PF06325 PrmA: Ribosomal prote 99.3 1.2E-11 2.7E-16 128.7 15.1 157 586-788 128-285 (295)
141 TIGR03533 L3_gln_methyl protei 99.3 1.4E-11 3.1E-16 129.7 15.8 108 628-735 120-251 (284)
142 PRK00312 pcm protein-L-isoaspa 99.3 1E-11 2.3E-16 125.9 14.1 111 616-736 65-176 (212)
143 PRK14121 tRNA (guanine-N(7)-)- 99.3 8E-12 1.7E-16 133.7 13.3 115 620-735 113-235 (390)
144 PTZ00146 fibrillarin; Provisio 99.3 2.9E-11 6.2E-16 124.2 16.4 139 623-789 126-274 (293)
145 TIGR03438 probable methyltrans 99.3 2.9E-11 6.4E-16 128.9 15.7 115 619-735 55-177 (301)
146 PLN02232 ubiquinone biosynthes 99.3 7.3E-12 1.6E-16 120.3 9.9 128 656-788 1-149 (160)
147 PRK11088 rrmA 23S rRNA methylt 99.3 9.5E-12 2E-16 131.1 11.6 94 628-736 84-182 (272)
148 PF05724 TPMT: Thiopurine S-me 99.3 1.4E-11 3.1E-16 123.4 12.3 153 617-786 25-190 (218)
149 COG0562 Glf UDP-galactopyranos 99.3 2.8E-11 6E-16 121.9 14.2 236 1-272 2-242 (374)
150 PRK11805 N5-glutamine S-adenos 99.3 3.6E-11 7.8E-16 127.7 15.5 105 630-734 134-262 (307)
151 PF03486 HI0933_like: HI0933-l 99.3 7.3E-12 1.6E-16 137.8 10.4 65 206-270 99-165 (409)
152 TIGR00536 hemK_fam HemK family 99.3 4E-11 8.7E-16 126.9 15.5 118 618-735 102-244 (284)
153 COG1635 THI4 Ribulose 1,5-bisp 99.3 5.6E-11 1.2E-15 113.3 13.4 68 1-78 31-99 (262)
154 PRK11188 rrmJ 23S rRNA methylt 99.3 2.8E-11 6E-16 121.5 12.2 110 616-737 37-167 (209)
155 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-10 3.1E-15 121.3 17.9 117 616-734 75-216 (251)
156 PRK13943 protein-L-isoaspartat 99.3 4.2E-11 9.2E-16 126.9 13.8 111 616-735 67-180 (322)
157 PRK10157 putative oxidoreducta 99.3 4.2E-11 9.1E-16 134.8 14.5 56 216-271 109-164 (428)
158 PHA03411 putative methyltransf 99.3 1.1E-10 2.4E-15 118.3 15.9 130 627-782 62-210 (279)
159 COG2519 GCD14 tRNA(1-methylade 99.3 6.4E-11 1.4E-15 116.8 13.7 110 619-735 84-195 (256)
160 KOG2820 FAD-dependent oxidored 99.3 1.9E-10 4.2E-15 116.5 17.3 62 216-278 154-218 (399)
161 KOG2361 Predicted methyltransf 99.3 1.3E-11 2.9E-16 119.3 8.6 151 632-786 74-237 (264)
162 PRK10901 16S rRNA methyltransf 99.2 2E-10 4.2E-15 128.8 17.0 118 619-738 234-375 (427)
163 COG0579 Predicted dehydrogenas 99.2 2.2E-10 4.9E-15 124.5 16.1 64 214-277 152-219 (429)
164 PRK14904 16S rRNA methyltransf 99.2 1.3E-10 2.7E-15 131.0 14.8 119 620-739 241-381 (445)
165 PRK14966 unknown domain/N5-glu 99.2 1.9E-10 4E-15 123.9 14.7 113 617-733 241-379 (423)
166 PRK11728 hydroxyglutarate oxid 99.2 1.7E-10 3.6E-15 129.1 14.7 57 214-271 148-204 (393)
167 PRK09328 N5-glutamine S-adenos 99.2 2.7E-10 5.9E-15 120.9 15.5 117 617-734 96-237 (275)
168 PLN02781 Probable caffeoyl-CoA 99.2 1.8E-10 3.8E-15 117.8 13.4 106 627-737 66-180 (234)
169 PRK14903 16S rRNA methyltransf 99.2 3.2E-10 6.9E-15 126.5 16.0 120 620-740 228-371 (431)
170 smart00650 rADc Ribosomal RNA 99.2 2.4E-10 5.3E-15 111.2 13.0 111 618-735 2-113 (169)
171 COG0644 FixC Dehydrogenases (f 99.2 1E-09 2.2E-14 122.6 19.7 56 216-271 96-152 (396)
172 PF00891 Methyltransf_2: O-met 99.2 3.3E-10 7.1E-15 117.5 14.4 114 619-742 90-206 (241)
173 PF06080 DUF938: Protein of un 99.2 3.1E-10 6.8E-15 109.8 13.0 157 630-788 26-194 (204)
174 TIGR00563 rsmB ribosomal RNA s 99.2 2E-10 4.4E-15 128.8 13.5 122 619-740 228-373 (426)
175 PRK14901 16S rRNA methyltransf 99.2 3.9E-10 8.5E-15 126.6 15.6 121 618-739 241-388 (434)
176 TIGR02032 GG-red-SF geranylger 99.2 2.7E-09 5.9E-14 114.6 21.5 56 216-271 92-148 (295)
177 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.8E-10 6.1E-15 118.9 13.1 116 623-739 65-203 (264)
178 PF08704 GCD14: tRNA methyltra 99.2 4.1E-10 8.9E-15 114.1 13.8 113 616-735 27-146 (247)
179 PRK01544 bifunctional N5-gluta 99.2 3.1E-10 6.8E-15 128.9 14.4 106 629-734 138-268 (506)
180 PRK04457 spermidine synthase; 99.1 1.6E-10 3.5E-15 120.1 10.7 110 628-737 65-179 (262)
181 PF05891 Methyltransf_PK: AdoM 99.1 3.4E-10 7.5E-15 109.9 11.3 146 629-786 55-201 (218)
182 KOG3010 Methyltransferase [Gen 99.1 2.8E-10 6.1E-15 110.3 10.4 102 628-733 31-135 (261)
183 PRK14902 16S rRNA methyltransf 99.1 4.5E-10 9.8E-15 126.8 13.7 118 620-738 241-382 (444)
184 PF01596 Methyltransf_3: O-met 99.1 1E-09 2.2E-14 108.7 14.0 122 610-739 29-159 (205)
185 COG4122 Predicted O-methyltran 99.1 7.1E-10 1.5E-14 109.3 12.4 111 625-740 55-171 (219)
186 TIGR00438 rrmJ cell division p 99.1 8.1E-10 1.8E-14 109.7 12.7 105 619-735 21-146 (188)
187 TIGR03704 PrmC_rel_meth putati 99.1 1.3E-09 2.8E-14 112.7 14.3 114 617-734 73-215 (251)
188 PRK00811 spermidine synthase; 99.1 4.9E-10 1.1E-14 118.0 11.1 108 628-735 75-191 (283)
189 cd02440 AdoMet_MTases S-adenos 99.1 7.2E-10 1.6E-14 98.2 10.7 101 632-734 1-103 (107)
190 PTZ00383 malate:quinone oxidor 99.1 9.6E-10 2.1E-14 124.3 13.9 57 215-272 211-274 (497)
191 PF03291 Pox_MCEL: mRNA cappin 99.1 6.3E-10 1.4E-14 118.5 11.0 108 629-736 62-187 (331)
192 PRK10015 oxidoreductase; Provi 99.1 4E-09 8.6E-14 118.7 17.9 55 217-271 110-164 (429)
193 PLN02476 O-methyltransferase 99.0 1.8E-09 4E-14 111.1 13.3 107 627-738 116-231 (278)
194 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.2E-09 4.8E-14 127.3 15.7 104 629-735 538-656 (702)
195 PRK04176 ribulose-1,5-biphosph 99.0 2.9E-09 6.4E-14 110.5 14.7 38 1-38 26-63 (257)
196 TIGR03197 MnmC_Cterm tRNA U-34 99.0 4.4E-09 9.6E-14 117.2 17.0 64 207-271 124-190 (381)
197 TIGR00292 thiazole biosynthesi 99.0 4.6E-09 1E-13 108.6 15.7 38 1-38 22-59 (254)
198 PRK15128 23S rRNA m(5)C1962 me 99.0 1.9E-09 4.1E-14 118.1 13.4 109 628-736 219-340 (396)
199 PRK13168 rumA 23S rRNA m(5)U19 99.0 4.5E-09 9.8E-14 118.6 16.7 113 615-735 283-400 (443)
200 COG2890 HemK Methylase of poly 99.0 3.5E-09 7.5E-14 110.8 14.2 101 632-735 113-238 (280)
201 PRK06847 hypothetical protein; 99.0 4.7E-09 1E-13 117.0 15.9 56 216-271 108-163 (375)
202 PRK08773 2-octaprenyl-3-methyl 99.0 4.3E-09 9.3E-14 117.9 15.6 56 216-271 114-169 (392)
203 PRK07190 hypothetical protein; 99.0 3.4E-08 7.4E-13 112.8 23.1 61 217-277 111-172 (487)
204 TIGR01988 Ubi-OHases Ubiquinon 99.0 5.2E-09 1.1E-13 117.1 15.9 55 216-270 107-162 (385)
205 PHA03412 putative methyltransf 99.0 2E-09 4.3E-14 106.7 10.6 96 629-730 49-158 (241)
206 TIGR00275 flavoprotein, HI0933 99.0 6.7E-09 1.5E-13 115.8 16.2 58 213-271 103-160 (400)
207 PRK08163 salicylate hydroxylas 99.0 7.5E-09 1.6E-13 116.3 15.9 56 216-271 110-166 (396)
208 PLN02366 spermidine synthase 99.0 3E-09 6.5E-14 112.4 11.6 108 628-735 90-206 (308)
209 PF05219 DREV: DREV methyltran 99.0 5.6E-09 1.2E-13 103.8 12.7 144 629-787 94-241 (265)
210 KOG2844 Dimethylglycine dehydr 99.0 8.8E-09 1.9E-13 113.1 15.3 56 215-271 187-243 (856)
211 PF01946 Thi4: Thi4 family; PD 99.0 5.3E-09 1.2E-13 101.1 12.1 38 1-38 18-55 (230)
212 KOG2904 Predicted methyltransf 99.0 1E-08 2.2E-13 101.0 14.2 124 616-739 132-289 (328)
213 TIGR01320 mal_quin_oxido malat 99.0 2E-08 4.4E-13 114.1 18.6 65 207-271 167-240 (483)
214 PRK07588 hypothetical protein; 99.0 1E-08 2.2E-13 114.9 16.0 54 216-270 104-157 (391)
215 PRK03522 rumB 23S rRNA methylu 99.0 4.8E-09 1E-13 112.8 12.7 111 617-734 161-273 (315)
216 PF02390 Methyltransf_4: Putat 99.0 3.9E-09 8.4E-14 104.4 10.9 103 632-735 20-133 (195)
217 PRK07236 hypothetical protein; 99.0 8.9E-09 1.9E-13 115.0 15.3 59 217-277 102-162 (386)
218 COG2263 Predicted RNA methylas 99.0 2.8E-08 6.1E-13 93.4 15.9 81 624-708 40-120 (198)
219 PRK08274 tricarballylate dehyd 98.9 1.6E-08 3.5E-13 115.8 17.5 60 211-270 127-191 (466)
220 TIGR00417 speE spermidine synt 98.9 6E-09 1.3E-13 109.4 12.8 107 628-734 71-185 (270)
221 PRK11101 glpA sn-glycerol-3-ph 98.9 4.7E-09 1E-13 121.7 13.1 57 215-271 149-211 (546)
222 PF05185 PRMT5: PRMT5 arginine 98.9 5.7E-09 1.2E-13 115.8 13.1 103 630-732 187-294 (448)
223 PRK10909 rsmD 16S rRNA m(2)G96 98.9 7E-09 1.5E-13 102.5 12.3 114 619-736 42-160 (199)
224 KOG2940 Predicted methyltransf 98.9 1.8E-09 3.9E-14 102.9 7.7 147 563-737 29-176 (325)
225 PF13738 Pyr_redox_3: Pyridine 98.9 1.3E-09 2.9E-14 110.0 7.4 50 221-270 88-137 (203)
226 PRK06753 hypothetical protein; 98.9 1.5E-08 3.1E-13 112.9 16.3 54 216-271 99-152 (373)
227 PLN02172 flavin-containing mon 98.9 5.6E-09 1.2E-13 117.8 12.9 38 1-38 11-48 (461)
228 PRK11727 23S rRNA mA1618 methy 98.9 7.9E-09 1.7E-13 109.1 13.0 153 629-787 114-293 (321)
229 PRK03612 spermidine synthase; 98.9 4E-09 8.6E-14 120.7 11.3 108 628-735 296-415 (521)
230 PLN02589 caffeoyl-CoA O-methyl 98.9 8.6E-09 1.9E-13 105.0 12.5 115 615-737 68-192 (247)
231 PRK05257 malate:quinone oxidor 98.9 4.4E-08 9.6E-13 111.4 19.4 58 214-271 182-246 (494)
232 TIGR01984 UbiH 2-polyprenyl-6- 98.9 2E-08 4.4E-13 112.2 16.4 62 216-277 106-169 (382)
233 PRK05714 2-octaprenyl-3-methyl 98.9 1E-08 2.2E-13 115.5 13.8 62 216-277 113-175 (405)
234 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.3E-08 2.7E-13 113.6 14.3 55 216-270 105-161 (387)
235 PRK01581 speE spermidine synth 98.9 1.2E-08 2.6E-13 107.7 12.9 108 628-735 149-268 (374)
236 TIGR02023 BchP-ChlP geranylger 98.9 3.2E-08 6.9E-13 110.6 17.3 61 216-277 93-162 (388)
237 TIGR02352 thiamin_ThiO glycine 98.9 2.8E-08 6E-13 109.1 16.2 189 214-419 136-336 (337)
238 PRK12266 glpD glycerol-3-phosp 98.9 3.1E-08 6.6E-13 114.0 17.1 57 215-271 155-216 (508)
239 PRK11445 putative oxidoreducta 98.9 6.5E-08 1.4E-12 106.4 19.0 61 1-74 2-62 (351)
240 PRK05868 hypothetical protein; 98.9 3.4E-08 7.5E-13 109.3 16.3 53 217-270 107-159 (372)
241 KOG1500 Protein arginine N-met 98.9 1E-08 2.2E-13 103.1 10.7 105 628-733 176-280 (517)
242 KOG1269 SAM-dependent methyltr 98.9 5.4E-09 1.2E-13 111.9 9.3 164 572-740 56-220 (364)
243 PF05148 Methyltransf_8: Hypot 98.9 1.7E-08 3.7E-13 96.8 11.6 127 616-787 58-186 (219)
244 PRK07608 ubiquinone biosynthes 98.9 4.7E-08 1E-12 109.5 17.3 61 216-277 112-174 (388)
245 PF00996 GDI: GDP dissociation 98.9 1.2E-07 2.5E-12 104.4 19.6 252 2-270 6-287 (438)
246 TIGR03219 salicylate_mono sali 98.9 1.7E-08 3.7E-13 113.9 13.6 54 216-271 106-159 (414)
247 PRK06834 hypothetical protein; 98.9 2E-08 4.4E-13 114.8 14.1 62 216-277 101-163 (488)
248 KOG2853 Possible oxidoreductas 98.9 4.3E-08 9.4E-13 99.3 14.5 37 383-420 447-483 (509)
249 PRK07333 2-octaprenyl-6-methox 98.9 2.5E-08 5.4E-13 112.3 14.6 56 216-271 112-167 (403)
250 TIGR02028 ChlP geranylgeranyl 98.9 7.8E-08 1.7E-12 107.4 18.4 36 1-36 1-36 (398)
251 PRK06481 fumarate reductase fl 98.9 4.8E-08 1E-12 112.4 16.9 57 215-271 190-251 (506)
252 PRK06184 hypothetical protein; 98.8 3.1E-08 6.7E-13 114.6 15.1 61 217-277 111-175 (502)
253 TIGR00479 rumA 23S rRNA (uraci 98.8 3.3E-08 7.2E-13 111.6 14.8 113 615-734 278-395 (431)
254 PRK08020 ubiF 2-octaprenyl-3-m 98.8 3.6E-08 7.7E-13 110.5 14.9 56 216-271 113-169 (391)
255 COG3963 Phospholipid N-methylt 98.8 3.4E-08 7.3E-13 90.1 11.6 145 578-737 6-158 (194)
256 PRK13339 malate:quinone oxidor 98.8 9.1E-08 2E-12 108.0 17.9 57 215-271 184-247 (497)
257 PRK08849 2-octaprenyl-3-methyl 98.8 9E-08 2E-12 106.8 17.8 55 217-271 112-167 (384)
258 KOG2899 Predicted methyltransf 98.8 2.2E-08 4.9E-13 96.9 10.9 106 627-733 56-207 (288)
259 PRK07364 2-octaprenyl-6-methox 98.8 3.3E-08 7.1E-13 111.8 14.1 56 216-271 122-181 (415)
260 PLN00093 geranylgeranyl diphos 98.8 7.6E-08 1.6E-12 108.6 16.8 33 1-33 40-72 (450)
261 PRK08013 oxidoreductase; Provi 98.8 4.8E-08 1E-12 109.6 15.0 62 216-277 112-175 (400)
262 KOG1499 Protein arginine N-met 98.8 1.6E-08 3.6E-13 104.5 10.0 105 627-732 58-164 (346)
263 PLN02672 methionine S-methyltr 98.8 2.5E-08 5.5E-13 120.0 13.2 106 630-735 119-278 (1082)
264 PTZ00338 dimethyladenosine tra 98.8 2.2E-08 4.8E-13 105.3 11.3 92 615-708 22-113 (294)
265 TIGR01813 flavo_cyto_c flavocy 98.8 5.2E-08 1.1E-12 110.8 15.2 57 215-271 130-192 (439)
266 PRK09126 hypothetical protein; 98.8 2.3E-08 5.1E-13 112.1 12.2 55 217-271 112-167 (392)
267 PRK08243 4-hydroxybenzoate 3-m 98.8 2.4E-08 5.3E-13 111.7 12.3 61 1-77 3-65 (392)
268 PRK06617 2-octaprenyl-6-methox 98.8 7E-08 1.5E-12 107.2 15.8 55 216-271 105-160 (374)
269 PRK13369 glycerol-3-phosphate 98.8 3E-08 6.6E-13 114.2 13.3 57 215-271 155-215 (502)
270 PF10294 Methyltransf_16: Puta 98.8 5.4E-08 1.2E-12 94.7 13.0 109 626-737 42-158 (173)
271 COG0220 Predicted S-adenosylme 98.8 2E-08 4.2E-13 100.7 10.1 104 631-735 50-164 (227)
272 COG1041 Predicted DNA modifica 98.8 4.7E-08 1E-12 101.8 13.0 118 616-735 184-310 (347)
273 COG2521 Predicted archaeal met 98.8 1.1E-08 2.4E-13 98.3 7.3 142 623-784 128-275 (287)
274 PF01739 CheR: CheR methyltran 98.8 3.6E-08 7.9E-13 96.9 11.3 124 610-733 12-173 (196)
275 PRK07494 2-octaprenyl-6-methox 98.8 7E-08 1.5E-12 108.0 14.9 56 216-271 112-167 (388)
276 PF06100 Strep_67kDa_ant: Stre 98.8 5E-07 1.1E-11 98.5 20.6 69 1-71 3-77 (500)
277 PF12147 Methyltransf_20: Puta 98.8 2E-07 4.4E-12 93.8 16.2 108 628-735 134-249 (311)
278 TIGR02085 meth_trns_rumB 23S r 98.8 5.1E-08 1.1E-12 107.2 13.3 112 617-735 221-334 (374)
279 PF01170 UPF0020: Putative RNA 98.8 6.2E-08 1.3E-12 94.7 12.3 117 616-732 15-148 (179)
280 KOG1975 mRNA cap methyltransfe 98.8 2E-08 4.3E-13 101.3 8.8 118 618-735 106-237 (389)
281 PRK07045 putative monooxygenas 98.8 8.2E-08 1.8E-12 107.4 15.0 56 216-271 107-165 (388)
282 PRK14896 ksgA 16S ribosomal RN 98.8 6.2E-08 1.4E-12 101.0 13.0 88 615-707 15-102 (258)
283 PF02475 Met_10: Met-10+ like- 98.8 2.4E-08 5.2E-13 98.2 9.2 100 627-732 99-199 (200)
284 PRK09897 hypothetical protein; 98.8 7.3E-08 1.6E-12 109.7 14.4 54 216-269 108-164 (534)
285 PRK06475 salicylate hydroxylas 98.8 1.4E-07 3E-12 105.9 16.4 56 216-271 108-167 (400)
286 PRK08850 2-octaprenyl-6-methox 98.8 1.1E-07 2.3E-12 107.1 15.5 61 217-277 113-175 (405)
287 PF00890 FAD_binding_2: FAD bi 98.8 8E-08 1.7E-12 108.7 14.5 60 213-272 139-204 (417)
288 PRK07538 hypothetical protein; 98.8 1.3E-07 2.8E-12 106.7 16.0 59 1-75 1-59 (413)
289 PLN02463 lycopene beta cyclase 98.8 1E-07 2.2E-12 107.0 14.6 54 216-270 115-168 (447)
290 PRK00274 ksgA 16S ribosomal RN 98.7 3.4E-08 7.3E-13 103.8 10.0 86 616-706 29-115 (272)
291 KOG3045 Predicted RNA methylas 98.7 5.1E-08 1.1E-12 95.2 10.0 122 618-786 168-291 (325)
292 PRK05732 2-octaprenyl-6-methox 98.7 1.4E-07 3E-12 106.0 15.3 55 217-271 114-169 (395)
293 KOG2415 Electron transfer flav 98.7 6.9E-07 1.5E-11 93.1 18.2 63 215-277 183-264 (621)
294 PF13454 NAD_binding_9: FAD-NA 98.7 1.4E-07 2.9E-12 90.5 12.4 51 218-269 104-155 (156)
295 TIGR01812 sdhA_frdA_Gneg succi 98.7 2.7E-07 5.8E-12 108.2 17.5 57 215-271 129-191 (566)
296 TIGR03378 glycerol3P_GlpB glyc 98.7 4.8E-07 1E-11 98.8 18.1 56 215-270 263-321 (419)
297 COG1092 Predicted SAM-dependen 98.7 1E-07 2.2E-12 102.8 12.2 107 630-737 218-338 (393)
298 PF01494 FAD_binding_3: FAD bi 98.7 4.1E-08 9E-13 108.4 9.7 56 216-271 112-172 (356)
299 PLN02661 Putative thiazole syn 98.7 3E-07 6.6E-12 97.5 15.5 37 1-37 93-130 (357)
300 PRK08244 hypothetical protein; 98.7 1.4E-07 2.9E-12 109.0 14.1 61 217-277 102-166 (493)
301 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.6E-07 5.6E-12 103.2 15.9 63 1-77 3-65 (390)
302 KOG1661 Protein-L-isoaspartate 98.7 1.1E-07 2.3E-12 90.4 10.6 110 617-734 68-192 (237)
303 PRK06183 mhpA 3-(3-hydroxyphen 98.7 4E-07 8.7E-12 106.1 17.8 61 1-77 11-71 (538)
304 TIGR01790 carotene-cycl lycope 98.7 1.8E-07 3.9E-12 104.7 14.0 55 216-271 86-141 (388)
305 PRK10611 chemotaxis methyltran 98.7 7.7E-08 1.7E-12 100.1 10.0 104 630-733 116-260 (287)
306 PRK05249 soluble pyridine nucl 98.7 1.6E-07 3.5E-12 107.5 13.7 55 215-269 216-270 (461)
307 TIGR02485 CobZ_N-term precorri 98.7 9.7E-08 2.1E-12 108.2 11.6 62 209-270 117-182 (432)
308 PLN02464 glycerol-3-phosphate 98.7 4.6E-07 1E-11 106.4 17.4 58 214-271 231-296 (627)
309 PRK06126 hypothetical protein; 98.7 1.1E-07 2.5E-12 111.1 12.0 61 217-277 128-195 (545)
310 TIGR00755 ksgA dimethyladenosi 98.7 2.2E-07 4.8E-12 96.8 12.8 87 615-706 15-104 (253)
311 PRK07573 sdhA succinate dehydr 98.7 3.6E-07 7.8E-12 107.6 16.0 54 218-271 173-232 (640)
312 PRK12842 putative succinate de 98.7 8.2E-07 1.8E-11 104.0 19.0 57 215-271 214-275 (574)
313 TIGR00095 RNA methyltransferas 98.7 2.4E-07 5.1E-12 91.4 12.2 106 628-736 48-160 (189)
314 PRK06185 hypothetical protein; 98.7 4.7E-07 1E-11 102.1 16.4 62 216-277 109-176 (407)
315 TIGR01292 TRX_reduct thioredox 98.7 2.2E-07 4.7E-12 100.1 13.1 50 220-270 62-111 (300)
316 PRK07121 hypothetical protein; 98.6 7E-07 1.5E-11 102.9 17.7 59 213-271 175-239 (492)
317 PRK12845 3-ketosteroid-delta-1 98.6 7.7E-07 1.7E-11 103.2 18.0 61 210-271 213-278 (564)
318 PRK08401 L-aspartate oxidase; 98.6 4.5E-07 9.7E-12 103.4 15.8 55 215-271 120-175 (466)
319 KOG1399 Flavin-containing mono 98.6 1.5E-07 3.2E-12 104.3 11.3 37 1-37 7-43 (448)
320 PRK08132 FAD-dependent oxidore 98.6 7E-07 1.5E-11 104.4 17.3 61 1-77 24-84 (547)
321 KOG3191 Predicted N6-DNA-methy 98.6 2.2E-06 4.7E-11 79.7 16.5 107 629-737 43-170 (209)
322 PRK05945 sdhA succinate dehydr 98.6 4.4E-07 9.6E-12 106.1 15.4 58 214-271 134-197 (575)
323 KOG2852 Possible oxidoreductas 98.6 3E-07 6.5E-12 91.4 11.5 50 1-52 11-66 (380)
324 PRK07803 sdhA succinate dehydr 98.6 7.8E-07 1.7E-11 104.7 17.3 36 2-37 10-45 (626)
325 PRK07804 L-aspartate oxidase; 98.6 7.1E-07 1.5E-11 103.5 16.7 57 215-271 144-210 (541)
326 PRK06116 glutathione reductase 98.6 1.7E-07 3.6E-12 107.0 11.3 55 215-269 208-263 (450)
327 TIGR01350 lipoamide_DH dihydro 98.6 1.4E-07 3E-12 108.1 10.7 56 215-270 211-268 (461)
328 KOG3178 Hydroxyindole-O-methyl 98.6 6.2E-07 1.3E-11 93.2 14.2 154 629-792 177-336 (342)
329 COG0578 GlpA Glycerol-3-phosph 98.6 5.7E-07 1.2E-11 100.2 14.9 56 216-271 165-225 (532)
330 PRK06175 L-aspartate oxidase; 98.6 6.7E-07 1.4E-11 100.8 15.3 56 215-270 128-188 (433)
331 PF00743 FMO-like: Flavin-bind 98.6 5.6E-08 1.2E-12 111.2 6.7 37 1-37 2-38 (531)
332 PRK08626 fumarate reductase fl 98.6 7.8E-07 1.7E-11 105.0 16.2 59 213-271 156-220 (657)
333 PRK06452 sdhA succinate dehydr 98.6 7.8E-07 1.7E-11 103.7 15.8 57 215-271 136-198 (566)
334 PRK04148 hypothetical protein; 98.6 7E-07 1.5E-11 80.8 11.9 103 619-737 6-111 (134)
335 PLN02697 lycopene epsilon cycl 98.6 6.3E-07 1.4E-11 102.2 14.4 55 216-271 193-248 (529)
336 PLN02823 spermine synthase 98.6 5.2E-07 1.1E-11 96.4 12.9 104 629-735 103-220 (336)
337 PRK06996 hypothetical protein; 98.6 7.2E-07 1.6E-11 100.0 14.7 62 216-277 116-182 (398)
338 PRK06416 dihydrolipoamide dehy 98.6 1.6E-06 3.6E-11 99.2 17.6 55 215-269 213-270 (462)
339 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 4.5E-07 9.8E-12 92.2 10.7 158 617-785 42-238 (256)
340 PRK11933 yebU rRNA (cytosine-C 98.5 7.4E-07 1.6E-11 99.5 13.3 114 626-740 110-247 (470)
341 PRK06134 putative FAD-binding 98.5 1.7E-06 3.7E-11 101.3 17.0 57 215-271 217-278 (581)
342 TIGR01989 COQ6 Ubiquinone bios 98.5 8.4E-07 1.8E-11 100.7 13.9 62 216-277 118-190 (437)
343 PF02527 GidB: rRNA small subu 98.5 1.2E-06 2.7E-11 85.1 12.8 95 632-733 51-146 (184)
344 COG0030 KsgA Dimethyladenosine 98.5 4.5E-07 9.8E-12 91.8 10.1 88 615-706 16-105 (259)
345 PLN02927 antheraxanthin epoxid 98.5 1.1E-06 2.3E-11 102.1 14.5 54 216-271 195-248 (668)
346 PF05834 Lycopene_cycl: Lycope 98.5 1.2E-06 2.5E-11 97.1 14.4 54 216-270 88-141 (374)
347 PRK06854 adenylylsulfate reduc 98.5 3.5E-06 7.6E-11 98.9 19.0 57 215-271 132-195 (608)
348 PRK12844 3-ketosteroid-delta-1 98.5 3.3E-06 7.2E-11 98.2 18.6 58 214-271 207-269 (557)
349 PRK05192 tRNA uridine 5-carbox 98.5 6.7E-07 1.5E-11 101.8 12.1 55 216-271 101-157 (618)
350 PRK06069 sdhA succinate dehydr 98.5 2.2E-06 4.7E-11 100.5 16.9 57 215-271 137-200 (577)
351 PF03602 Cons_hypoth95: Conser 98.5 4.7E-07 1E-11 88.5 9.4 116 620-737 31-155 (183)
352 TIGR03140 AhpF alkyl hydropero 98.5 7.3E-07 1.6E-11 103.1 12.7 54 217-270 269-322 (515)
353 PRK01544 bifunctional N5-gluta 98.5 5.3E-07 1.1E-11 102.8 11.1 107 628-735 346-462 (506)
354 TIGR00551 nadB L-aspartate oxi 98.5 2.5E-06 5.5E-11 98.0 16.8 57 215-271 128-189 (488)
355 TIGR00478 tly hemolysin TlyA f 98.5 8E-07 1.7E-11 89.5 11.0 102 615-733 60-169 (228)
356 PRK07395 L-aspartate oxidase; 98.5 1.7E-06 3.6E-11 100.3 15.3 57 214-270 133-196 (553)
357 PRK15317 alkyl hydroperoxide r 98.5 8.4E-07 1.8E-11 102.7 12.9 54 217-270 268-321 (517)
358 PRK07818 dihydrolipoamide dehy 98.5 1.4E-06 3E-11 99.8 14.5 55 215-269 213-271 (466)
359 PRK06263 sdhA succinate dehydr 98.5 2.1E-06 4.6E-11 99.9 16.2 57 215-271 134-197 (543)
360 PRK12837 3-ketosteroid-delta-1 98.5 2.4E-06 5.2E-11 98.7 16.4 36 2-38 9-44 (513)
361 TIGR01811 sdhA_Bsu succinate d 98.5 1.8E-06 3.9E-11 101.1 15.5 35 3-37 1-35 (603)
362 TIGR01424 gluta_reduc_2 glutat 98.5 2.6E-06 5.7E-11 96.8 16.2 55 215-269 207-261 (446)
363 KOG0820 Ribosomal RNA adenine 98.5 6.2E-07 1.3E-11 88.7 9.3 88 616-705 45-132 (315)
364 PRK12834 putative FAD-binding 98.5 5E-06 1.1E-10 96.9 18.7 38 2-39 6-45 (549)
365 PF10672 Methyltrans_SAM: S-ad 98.5 8.5E-07 1.8E-11 92.1 10.9 106 629-736 123-239 (286)
366 PRK12835 3-ketosteroid-delta-1 98.5 1.4E-06 3E-11 101.8 14.0 36 2-37 13-48 (584)
367 PRK08958 sdhA succinate dehydr 98.5 2.2E-06 4.7E-11 100.2 15.6 58 214-271 142-206 (588)
368 PTZ00139 Succinate dehydrogena 98.5 4.4E-06 9.6E-11 98.2 18.0 57 215-271 166-229 (617)
369 PRK07512 L-aspartate oxidase; 98.4 3.2E-06 7E-11 97.4 16.2 58 214-271 135-197 (513)
370 TIGR02053 MerA mercuric reduct 98.4 1.8E-06 3.8E-11 99.0 14.0 55 215-269 207-264 (463)
371 PRK04338 N(2),N(2)-dimethylgua 98.4 1.1E-06 2.3E-11 96.2 11.4 99 629-734 57-157 (382)
372 COG2072 TrkA Predicted flavopr 98.4 9.8E-07 2.1E-11 99.3 11.4 37 1-37 9-46 (443)
373 PRK08275 putative oxidoreducta 98.4 2.3E-06 5E-11 99.8 14.7 57 215-271 137-200 (554)
374 PRK06467 dihydrolipoamide dehy 98.4 1.4E-06 3.1E-11 99.6 12.7 37 1-37 5-41 (471)
375 PF01134 GIDA: Glucose inhibit 98.4 1E-06 2.3E-11 95.1 10.7 54 216-270 96-151 (392)
376 PRK06370 mercuric reductase; V 98.4 1.5E-06 3.2E-11 99.5 12.8 55 215-269 212-269 (463)
377 COG1352 CheR Methylase of chem 98.4 1.7E-06 3.6E-11 88.9 11.7 125 608-733 76-239 (268)
378 PRK09231 fumarate reductase fl 98.4 3.6E-06 7.9E-11 98.4 16.1 57 215-271 133-196 (582)
379 KOG1663 O-methyltransferase [S 98.4 1.9E-06 4.1E-11 83.9 11.2 116 617-740 64-188 (237)
380 PRK08010 pyridine nucleotide-d 98.4 3.8E-06 8.3E-11 95.5 15.8 54 215-269 199-252 (441)
381 PRK12843 putative FAD-binding 98.4 7.7E-06 1.7E-10 95.8 18.6 57 215-271 221-282 (578)
382 PRK07843 3-ketosteroid-delta-1 98.4 6.8E-06 1.5E-10 95.7 18.0 57 215-271 208-269 (557)
383 COG2520 Predicted methyltransf 98.4 1E-06 2.3E-11 92.9 10.0 107 628-741 187-295 (341)
384 PRK07251 pyridine nucleotide-d 98.4 7.2E-06 1.6E-10 93.2 17.8 54 215-269 198-251 (438)
385 TIGR01176 fum_red_Fp fumarate 98.4 4.1E-06 9E-11 97.7 15.9 58 214-271 131-195 (580)
386 TIGR01421 gluta_reduc_1 glutat 98.4 2.2E-06 4.7E-11 97.4 13.0 55 215-269 207-263 (450)
387 PRK00050 16S rRNA m(4)C1402 me 98.4 7.1E-07 1.5E-11 93.1 8.2 86 617-705 7-99 (296)
388 COG0421 SpeE Spermidine syntha 98.4 2E-06 4.4E-11 89.2 11.4 118 615-734 63-189 (282)
389 PRK09078 sdhA succinate dehydr 98.4 4.9E-06 1.1E-10 97.6 16.1 57 215-271 149-212 (598)
390 PRK12839 hypothetical protein; 98.4 1.4E-05 3E-10 93.1 19.6 38 2-39 10-47 (572)
391 PLN00128 Succinate dehydrogena 98.4 4.8E-06 1E-10 97.9 15.8 57 215-271 187-250 (635)
392 PF04820 Trp_halogenase: Trypt 98.4 1.5E-06 3.3E-11 98.2 11.2 54 216-270 155-210 (454)
393 COG2265 TrmA SAM-dependent met 98.4 4E-06 8.7E-11 92.7 14.2 113 615-735 279-396 (432)
394 PRK05329 anaerobic glycerol-3- 98.4 1.8E-06 3.8E-11 95.8 11.2 55 216-270 260-317 (422)
395 PRK05031 tRNA (uracil-5-)-meth 98.4 2.7E-06 5.9E-11 93.0 12.4 111 615-735 193-320 (362)
396 KOG2915 tRNA(1-methyladenosine 98.4 3.8E-06 8.3E-11 83.2 12.0 108 618-732 94-207 (314)
397 PRK07057 sdhA succinate dehydr 98.4 1E-05 2.2E-10 94.9 17.6 57 215-271 148-211 (591)
398 KOG2614 Kynurenine 3-monooxyge 98.4 2E-06 4.4E-11 91.0 10.4 36 2-37 4-39 (420)
399 KOG3420 Predicted RNA methylas 98.4 6.9E-07 1.5E-11 79.3 5.8 86 620-707 39-125 (185)
400 TIGR02143 trmA_only tRNA (urac 98.4 3.1E-06 6.7E-11 92.2 12.3 110 616-735 185-311 (353)
401 PLN02507 glutathione reductase 98.3 2.4E-05 5.2E-10 89.9 20.1 55 215-269 244-298 (499)
402 KOG1331 Predicted methyltransf 98.3 5.2E-07 1.1E-11 90.6 5.5 113 615-739 33-147 (293)
403 PLN02985 squalene monooxygenas 98.3 7.4E-06 1.6E-10 94.1 15.8 60 1-76 44-103 (514)
404 COG1249 Lpd Pyruvate/2-oxoglut 98.3 1.8E-06 3.9E-11 96.2 10.1 54 215-268 214-269 (454)
405 PRK08071 L-aspartate oxidase; 98.3 7.8E-06 1.7E-10 94.2 15.6 56 215-271 130-190 (510)
406 PRK05976 dihydrolipoamide dehy 98.3 3.8E-06 8.3E-11 96.3 13.1 36 1-37 5-40 (472)
407 TIGR03143 AhpF_homolog putativ 98.3 2.3E-06 5.1E-11 99.7 11.4 36 1-37 5-40 (555)
408 TIGR03439 methyl_EasF probable 98.3 1.1E-05 2.4E-10 85.5 15.4 144 581-734 36-196 (319)
409 PLN02815 L-aspartate oxidase 98.3 6.1E-06 1.3E-10 96.1 14.6 35 2-37 31-65 (594)
410 PRK08205 sdhA succinate dehydr 98.3 9E-06 1.9E-10 95.3 16.0 57 215-271 140-206 (583)
411 PTZ00306 NADH-dependent fumara 98.3 1.2E-05 2.6E-10 101.3 17.5 37 2-38 411-447 (1167)
412 COG0357 GidB Predicted S-adeno 98.3 5.2E-06 1.1E-10 82.0 11.0 97 630-733 68-166 (215)
413 COG0116 Predicted N6-adenine-s 98.3 8.9E-06 1.9E-10 86.4 13.5 119 616-735 178-344 (381)
414 PF01564 Spermine_synth: Sperm 98.3 3.2E-06 6.9E-11 87.0 10.0 108 628-735 75-191 (246)
415 PRK08641 sdhA succinate dehydr 98.3 1.3E-05 2.9E-10 93.8 16.5 36 2-37 5-40 (589)
416 COG0492 TrxB Thioredoxin reduc 98.3 5.9E-06 1.3E-10 87.5 12.1 54 216-271 62-115 (305)
417 PF09445 Methyltransf_15: RNA 98.3 1E-06 2.2E-11 83.0 5.6 73 631-704 1-77 (163)
418 PF07942 N2227: N2227-like pro 98.3 2.8E-05 6E-10 79.7 16.3 144 629-786 56-242 (270)
419 KOG1439 RAB proteins geranylge 98.3 7.7E-06 1.7E-10 85.7 12.3 251 1-270 5-287 (440)
420 COG0742 N6-adenine-specific me 98.3 1.7E-05 3.8E-10 75.9 13.6 117 619-736 31-155 (187)
421 PF03141 Methyltransf_29: Puta 98.3 6.6E-07 1.4E-11 97.0 4.3 115 615-737 99-221 (506)
422 PF08123 DOT1: Histone methyla 98.3 4.2E-06 9.2E-11 82.9 9.7 115 616-733 29-156 (205)
423 TIGR01789 lycopene_cycl lycope 98.2 7.9E-06 1.7E-10 90.1 12.1 36 2-37 1-38 (370)
424 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.1E-05 2.4E-10 96.1 14.0 120 616-735 176-347 (702)
425 PTZ00367 squalene epoxidase; P 98.2 7.9E-06 1.7E-10 94.4 12.3 60 1-75 34-93 (567)
426 PRK06327 dihydrolipoamide dehy 98.2 8.5E-06 1.8E-10 93.5 12.5 31 1-31 5-35 (475)
427 PF02384 N6_Mtase: N-6 DNA Met 98.2 4.9E-06 1.1E-10 89.9 9.9 122 615-736 32-184 (311)
428 COG1148 HdrA Heterodisulfide r 98.2 1.2E-06 2.5E-11 93.5 4.8 43 1-43 125-167 (622)
429 PF00732 GMC_oxred_N: GMC oxid 98.2 2.1E-05 4.6E-10 84.4 14.7 35 1-35 1-36 (296)
430 PF04816 DUF633: Family of unk 98.2 2.2E-05 4.7E-10 77.9 13.2 99 633-735 1-101 (205)
431 COG1252 Ndh NADH dehydrogenase 98.2 1.8E-05 3.9E-10 86.0 13.5 53 214-270 208-261 (405)
432 PF00070 Pyr_redox: Pyridine n 98.2 2.1E-05 4.5E-10 65.8 11.0 33 2-34 1-33 (80)
433 TIGR01372 soxA sarcosine oxida 98.2 4.6E-05 9.9E-10 94.7 18.6 41 1-41 164-204 (985)
434 PF07156 Prenylcys_lyase: Pren 98.2 3.6E-05 7.9E-10 83.5 15.5 111 145-271 69-187 (368)
435 PRK06912 acoL dihydrolipoamide 98.2 3E-05 6.5E-10 88.6 15.8 55 215-269 211-266 (458)
436 KOG2404 Fumarate reductase, fl 98.2 1.6E-05 3.4E-10 80.6 11.5 38 2-39 11-48 (477)
437 COG0144 Sun tRNA and rRNA cyto 98.2 3.2E-05 7E-10 84.1 14.7 120 620-740 147-293 (355)
438 PRK09077 L-aspartate oxidase; 98.1 4.8E-05 1.1E-09 88.3 17.0 35 2-37 10-44 (536)
439 PRK08294 phenol 2-monooxygenas 98.1 3E-05 6.4E-10 91.6 15.2 61 1-77 33-94 (634)
440 PF01728 FtsJ: FtsJ-like methy 98.1 4.7E-06 1E-10 82.2 7.1 110 616-737 7-141 (181)
441 TIGR00136 gidA glucose-inhibit 98.1 2.3E-05 5E-10 89.4 13.4 55 216-271 97-154 (617)
442 PRK07845 flavoprotein disulfid 98.1 2.4E-05 5.1E-10 89.5 13.5 37 1-38 2-38 (466)
443 TIGR02061 aprA adenosine phosp 98.1 9.4E-05 2E-09 86.3 17.9 33 2-34 1-37 (614)
444 PF04672 Methyltransf_19: S-ad 98.1 1.7E-05 3.6E-10 80.6 10.0 167 611-783 49-233 (267)
445 PRK00536 speE spermidine synth 98.1 4.3E-05 9.3E-10 78.5 13.0 98 628-735 71-171 (262)
446 PTZ00058 glutathione reductase 98.1 5.9E-05 1.3E-09 87.2 15.5 36 2-38 50-85 (561)
447 COG3075 GlpB Anaerobic glycero 98.0 7.8E-05 1.7E-09 76.2 13.8 56 216-271 259-317 (421)
448 PRK12779 putative bifunctional 98.0 3.8E-06 8.3E-11 102.6 5.3 40 1-40 307-346 (944)
449 PF09243 Rsm22: Mitochondrial 98.0 5E-05 1.1E-09 79.6 13.0 123 616-740 20-144 (274)
450 TIGR03315 Se_ygfK putative sel 98.0 4.3E-06 9.4E-11 101.0 5.4 40 1-40 538-577 (1012)
451 KOG1335 Dihydrolipoamide dehyd 98.0 1.7E-05 3.7E-10 82.4 8.8 55 215-269 252-312 (506)
452 COG4529 Uncharacterized protei 98.0 3.5E-05 7.7E-10 83.8 11.6 37 1-37 2-41 (474)
453 COG4716 Myosin-crossreactive a 98.0 5.2E-05 1.1E-09 78.4 11.4 208 1-245 23-257 (587)
454 PF05958 tRNA_U5-meth_tr: tRNA 98.0 2.8E-05 6E-10 84.7 10.0 74 615-691 183-256 (352)
455 PF06039 Mqo: Malate:quinone o 98.0 6.6E-05 1.4E-09 81.3 12.5 60 214-273 180-246 (488)
456 PF12831 FAD_oxidored: FAD dep 98.0 5.2E-06 1.1E-10 93.6 4.4 39 2-40 1-39 (428)
457 PRK12831 putative oxidoreducta 97.9 8.2E-06 1.8E-10 92.8 5.4 40 1-40 141-180 (464)
458 PRK13800 putative oxidoreducta 97.9 0.00011 2.4E-09 90.5 15.6 33 2-34 15-47 (897)
459 TIGR00308 TRM1 tRNA(guanine-26 97.9 5.9E-05 1.3E-09 82.1 11.6 99 630-735 45-147 (374)
460 PRK09853 putative selenate red 97.9 8.7E-06 1.9E-10 98.0 5.5 40 1-40 540-579 (1019)
461 PRK09564 coenzyme A disulfide 97.9 4.6E-05 9.9E-10 87.0 11.2 35 1-35 1-37 (444)
462 COG5044 MRS6 RAB proteins gera 97.9 0.0002 4.3E-09 74.5 14.3 248 1-266 7-279 (434)
463 PLN02852 ferredoxin-NADP+ redu 97.9 1E-05 2.3E-10 91.2 5.5 40 1-40 27-68 (491)
464 PF00398 RrnaAD: Ribosomal RNA 97.9 6.1E-05 1.3E-09 78.8 10.6 100 615-723 16-119 (262)
465 KOG3987 Uncharacterized conser 97.9 3.1E-06 6.6E-11 79.9 0.5 94 629-735 112-207 (288)
466 PF13679 Methyltransf_32: Meth 97.9 5.3E-05 1.2E-09 71.1 8.8 100 627-733 23-129 (141)
467 KOG2665 Predicted FAD-dependen 97.9 0.00011 2.4E-09 74.4 11.2 57 215-271 196-257 (453)
468 KOG1709 Guanidinoacetate methy 97.9 0.0001 2.2E-09 70.5 10.1 102 628-733 100-204 (271)
469 PRK13512 coenzyme A disulfide 97.9 0.00012 2.6E-09 83.0 12.7 51 215-269 189-239 (438)
470 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00013 2.8E-09 76.8 11.8 119 620-739 76-223 (283)
471 COG0293 FtsJ 23S rRNA methylas 97.8 0.00027 5.8E-09 68.9 12.3 111 616-738 31-162 (205)
472 COG0500 SmtA SAM-dependent met 97.8 0.00024 5.2E-09 69.0 12.5 103 633-740 52-160 (257)
473 PF13578 Methyltransf_24: Meth 97.8 1.1E-05 2.3E-10 71.8 2.4 99 634-736 1-106 (106)
474 PRK06115 dihydrolipoamide dehy 97.8 1.8E-05 4E-10 90.4 4.9 39 1-39 4-42 (466)
475 PTZ00188 adrenodoxin reductase 97.8 2.5E-05 5.4E-10 86.7 5.6 40 1-40 40-80 (506)
476 PF11968 DUF3321: Putative met 97.8 0.00012 2.6E-09 71.4 9.4 120 631-787 53-182 (219)
477 PRK12775 putative trifunctiona 97.8 2E-05 4.3E-10 97.3 5.1 40 1-40 431-470 (1006)
478 PRK04965 NADH:flavorubredoxin 97.8 0.00019 4E-09 80.0 12.5 48 222-269 190-237 (377)
479 PRK09754 phenylpropionate diox 97.8 0.00024 5.3E-09 79.6 13.4 49 221-270 192-240 (396)
480 PRK12769 putative oxidoreducta 97.8 2.3E-05 5E-10 93.4 5.4 40 1-40 328-367 (654)
481 PRK05335 tRNA (uracil-5-)-meth 97.8 2.6E-05 5.7E-10 85.2 5.0 36 1-36 3-38 (436)
482 PRK06567 putative bifunctional 97.7 2.5E-05 5.5E-10 92.8 5.0 37 1-37 384-420 (1028)
483 PF03059 NAS: Nicotianamine sy 97.7 0.00025 5.4E-09 73.1 11.4 104 630-734 121-229 (276)
484 PRK11760 putative 23S rRNA C24 97.7 0.0002 4.3E-09 75.1 10.6 97 617-728 191-296 (357)
485 TIGR01316 gltA glutamate synth 97.7 3.3E-05 7.1E-10 87.8 5.1 39 1-39 134-172 (449)
486 PF01269 Fibrillarin: Fibrilla 97.7 0.00057 1.2E-08 67.0 12.8 143 623-789 67-215 (229)
487 PRK12778 putative bifunctional 97.7 3.6E-05 7.7E-10 93.3 5.4 39 1-39 432-470 (752)
488 PRK10742 putative methyltransf 97.7 0.00013 2.8E-09 73.3 8.4 90 619-709 76-177 (250)
489 COG4076 Predicted RNA methylas 97.7 7.6E-05 1.6E-09 69.7 6.2 102 631-735 34-135 (252)
490 KOG3201 Uncharacterized conser 97.7 9.5E-05 2.1E-09 67.4 6.3 140 620-786 20-166 (201)
491 PRK10262 thioredoxin reductase 97.7 4.1E-05 8.9E-10 83.2 4.9 39 1-40 7-45 (321)
492 KOG2960 Protein involved in th 97.7 1.9E-05 4.2E-10 75.0 1.9 67 2-78 78-147 (328)
493 COG4798 Predicted methyltransf 97.7 0.00021 4.5E-09 67.4 8.6 155 620-787 39-206 (238)
494 PRK12810 gltD glutamate syntha 97.7 4.5E-05 9.7E-10 87.3 5.2 39 1-39 144-182 (471)
495 PRK11749 dihydropyrimidine deh 97.7 4.6E-05 9.9E-10 87.0 5.3 39 1-39 141-179 (457)
496 COG2509 Uncharacterized FAD-de 97.7 0.0011 2.3E-08 71.5 15.0 57 214-270 172-229 (486)
497 PRK12814 putative NADPH-depend 97.6 4.5E-05 9.8E-10 90.6 5.3 39 1-39 194-232 (652)
498 PF13434 K_oxygenase: L-lysine 97.6 0.00014 3.1E-09 78.9 8.6 36 2-37 4-40 (341)
499 COG0493 GltD NADPH-dependent g 97.6 4E-05 8.8E-10 85.6 4.4 41 1-41 124-164 (457)
500 PF05971 Methyltransf_10: Prot 97.6 0.0005 1.1E-08 71.6 12.0 95 616-710 84-191 (299)
No 1
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=8e-60 Score=512.82 Aligned_cols=342 Identities=34% Similarity=0.598 Sum_probs=299.2
Q ss_pred CceEEEEeChHHHHHhcccCCcchhHhhhcCceEeccChhhHHHHHHHHHhcCcccccchhhhcccCCCCchhhhhhhhH
Q 002928 477 LKTVLRIHNPQFYWKVMTEADLGLADSYINGDFSFVDKDEGLLNLFLIVLANQDLDSSTSKLKQKRGWWSPMFFTASIAS 556 (864)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~e~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (864)
++++|+|+||+++.+++.+|+||||||||.|+|++++ |.+++..++.|..... . . ..+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~----~-~--~~~~~~-------- 95 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEK----L-P--HHLKDT-------- 95 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhh----h-h--hhHHHH--------
Confidence 5789999999999999999999999999999999975 8888888877652100 0 0 000000
Q ss_pred HHHHH-hhccccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEE
Q 002928 557 AKYFF-RHISRKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLE 635 (864)
Q Consensus 557 ~~~~~-~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLD 635 (864)
...+ .+.++.|++++++++|++|||++|+||+.++|++|+|||+||+. .++|++||.++++.+++++.++++.+|||
T Consensus 96 -~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLD 173 (383)
T PRK11705 96 -LRILRARLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLD 173 (383)
T ss_pred -HHHHHHHHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 0111 22466899999999999999999999999999999999999975 47999999999999999999999999999
Q ss_pred EcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHH
Q 002928 636 IGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYME 715 (864)
Q Consensus 636 iGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~ 715 (864)
||||||.++..+++.++++|+|+|+|++|++.|+++++ ++ ++++...|+.+++ ++||.|+++++++|++.++++
T Consensus 174 IGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~ 247 (383)
T PRK11705 174 IGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYR 247 (383)
T ss_pred eCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHH
Confidence 99999999999998878999999999999999999874 33 5889999998774 789999999999999988899
Q ss_pred HHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHH
Q 002928 716 EFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTL 795 (864)
Q Consensus 716 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl 795 (864)
.+++++.++|||||++++++++.+... .....|+.+|+||++.+|+++++.+..+ .||++.++++++.||.+|+
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~--~~~~v~d~~~~~~hy~~TL 321 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASE--GLFVMEDWHNFGADYDRTL 321 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHH--CCcEEEEEecChhhHHHHH
Confidence 999999999999999999988755421 2346789999999999999999877654 5899999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcCCCCc
Q 002928 796 RCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRPSNVA 852 (864)
Q Consensus 796 ~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~~~~~ 852 (864)
..|+++|+++++++.+ +|++.|.|+|++||++|+++|+.|.++++|++++||+..+
T Consensus 322 ~~W~~~f~~~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~~~~~ 377 (383)
T PRK11705 322 MAWHENFEAAWPELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPRGVEG 377 (383)
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCC
Confidence 9999999999999987 6999999999999999999999999999999999987443
No 2
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-61 Score=482.54 Aligned_cols=278 Identities=41% Similarity=0.750 Sum_probs=266.5
Q ss_pred hccccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchH
Q 002928 563 HISRKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGT 642 (864)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~ 642 (864)
+..++++.+.+.++|++|||++|+||++|+|++|+|||+||+.++.+|++||.+|++.++++++++||++|||||||||.
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~ 85 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG 85 (283)
T ss_pred cccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHH
Q 002928 643 LAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCE 722 (864)
Q Consensus 643 ~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~ 722 (864)
+++++|++++++|+|+|+|++|.+.+++++++.|++++|+++..|++++. +.||.|+|++|+||+|.++.+.+|+.++
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~ 163 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVY 163 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 5599999999999999999999999999
Q ss_pred hccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHH
Q 002928 723 SLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNF 802 (864)
Q Consensus 723 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (864)
++|+|||++++++++.++..+. ....|+.+||||||.+|+..++.+...+ +||.+.+++.++.||++|+..|.++|
T Consensus 164 ~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~-~~~~v~~~~~~~~hYa~Tl~~W~~~f 239 (283)
T COG2230 164 ALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASE-AGFVVLDVESLRPHYARTLRLWRERF 239 (283)
T ss_pred hhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHh-cCcEEehHhhhcHHHHHHHHHHHHHH
Confidence 9999999999999998886544 5789999999999999999999887775 89999999999999999999999999
Q ss_pred HHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEc
Q 002928 803 LEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSR 847 (864)
Q Consensus 803 ~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~ 847 (864)
+++++++.++ ++|+|.|||++||++|+.+|+.|.++++|++++|
T Consensus 240 ~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 240 EANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 9999999998 9999999999999999999999999999999986
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2.6e-59 Score=483.23 Aligned_cols=272 Identities=50% Similarity=0.873 Sum_probs=227.4
Q ss_pred CchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHH
Q 002928 568 NTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEI 647 (864)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (864)
+++++++++|++|||++|+||++|||++|+|||+||+++.++|++||.+|++.++++++++||++|||||||||++++++
T Consensus 1 ~~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 1 HSKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp --S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred CccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhcccc
Q 002928 648 VKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAE 727 (864)
Q Consensus 648 a~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkp 727 (864)
|+++|++|+||++|++|.+++++++++.|+++++++.++|+++++ .+||.|+|++|+||+++++++.+|+++.++|||
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999987 499999999999999999999999999999999
Q ss_pred CcEEEEEEecCCCcccccccCc-cchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHHHHhH
Q 002928 728 HGLLLLQFISVPDQCYDEHRLS-PGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQ 806 (864)
Q Consensus 728 gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 806 (864)
||+++++.++.....+...... .+|+.+||||++.+|+.+++...+++ +||++.++++++.||.+|++.|+++|.+++
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~ 237 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVENLGRHYARTLRAWRENFDANR 237 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEEE-HHHHHHHHHHHHHHHHHTH
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEEEcCcCHHHHHHHHHHHHHHHH
Confidence 9999999999887665554433 49999999999999999999987775 899999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEE
Q 002928 807 SKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQI 843 (864)
Q Consensus 807 ~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~ 843 (864)
+++.++ |+++|.|||++||++|+++|+.|.++++||
T Consensus 238 ~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 238 EEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 999999 999999999999999999999999999997
No 4
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=100.00 E-value=3.5e-49 Score=392.81 Aligned_cols=409 Identities=39% Similarity=0.675 Sum_probs=368.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe----eCCeeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT----IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~----~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
++|+|||+|+|||||||.|+++ ++|||+|+.+++||+++|.. .+|.-+|.|..+++.-.|+++..|++.+|++..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 5899999999999999999998 79999999999999999995 356789999999988899999999999999999
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
...+++.+..+. ..+++.....+..++.+..++++|+++.++.++++|...... ........+.++.+|+..++
T Consensus 88 as~Msf~v~~d~-gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~-----~~d~~~~~~~tl~~~L~~~~ 161 (447)
T COG2907 88 ASFMSFSVSLDM-GGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLA-----PSDNAGQGDTTLAQYLKQRN 161 (447)
T ss_pred ccceeEEEEecC-CceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhcc-----chhhhcCCCccHHHHHHhcC
Confidence 999999998665 557777666667788889999999999999999998775211 11222336789999999999
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCc
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGC 236 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~ 236 (864)
++..+.+.++.|+.+++|+++..++..+++..++.|+++++++...+.+.|+++.||+.++++.|+..+ +++|.+++
T Consensus 162 f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~ 238 (447)
T COG2907 162 FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRT 238 (447)
T ss_pred ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc---cceeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 67899999
Q ss_pred ceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeeceEEEecCCCCCCCCcCCccc
Q 002928 237 EVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYSDIFLHRDKNFMPRNPAAWSA 316 (864)
Q Consensus 237 ~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~l~~d~~~~p~~~~~~~~ 316 (864)
+|.+|.+-.+++.|+-.+|++..+|+||+||.++.++.++++ +++.+.+.+..+.|+.++.+||.|.+++|.....|.+
T Consensus 239 ~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awas 317 (447)
T COG2907 239 PVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWAS 317 (447)
T ss_pred ceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccc
Confidence 999999999999998888998999999999999999999986 5678888999999999999999999999999999999
Q ss_pred ceeccC---CCCceEEEEeccccccCccCCCCeEEEcC--CCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeE
Q 002928 317 WNFLGS---TGGKVCLTYWLNVVQNIEETRLPFLVTLN--PDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIW 391 (864)
Q Consensus 317 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~l~--p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~ 391 (864)
|+|..+ ...+..++||+|.++.+... ++.+.+++ |...|..++.+..+.+|.+++.....+.++..++..++.|
T Consensus 318 wny~~~~~~e~~~~~lty~mN~lq~l~~~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~tw 396 (447)
T COG2907 318 WNYLGTVQWELCQGSLTYWMNRLQALISV-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTW 396 (447)
T ss_pred cceeccccccccCcceeccHHHhhcccCC-cceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCC
Confidence 999964 23567889999999999876 88999999 7766777888888999999999999999999999999999
Q ss_pred EEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 392 FCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 392 ~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
|||.|-|.|+||+...+|..+|+.+ |.+|+
T Consensus 397 fcgAy~g~GFHeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 397 FCGAYFGRGFHEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred cchhhhccccchhhhhhHHHHHHhc-CCccc
Confidence 9999999999999999999999987 55553
No 5
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-32 Score=297.33 Aligned_cols=394 Identities=23% Similarity=0.355 Sum_probs=275.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC--CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG--VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G--~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
|+|+|||||+|||+|||+|++++ .+|+|||+.+++||...|+..+|+.+|.|+|.|... .+.+.++++++|++....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 68999999999999999999999 999999999999999999999999999999998544 578889999999998776
Q ss_pred cc--eeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 79 DM--SFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
.. ....++.+++.++++... +-.+.. ...+...... ++ ..++. ....+...++.++++|++++
T Consensus 80 ~~~~~~~~i~~~gkl~p~P~~~-i~~ip~----~~~~~~~~~~----~~---~~~~~--~~~~~~~~~d~sv~~f~r~~- 144 (444)
T COG1232 80 WNSTARKYIYYDGKLHPIPTPT-ILGIPL----LLLSSEAGLA----RA---LQEFI--RPKSWEPKQDISVGEFIRRR- 144 (444)
T ss_pred cCCcccceEeeCCcEEECCccc-eeecCC----ccccchhHHH----HH---HHhhh--cccCCCCCCCcCHHHHHHHH-
Confidence 32 233355777777776532 211110 0011000000 00 01111 11123445789999999999
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHH-HHHHhhcCCC--cc---------CCCCcEEEecCChHHHHHHHHHH
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSV-LSFCRNHHAL--QI---------FGRPQWLTVRSRSRSYVDKVIEL 224 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~--~~---------~~~~~~~~~~gG~~~l~~~La~~ 224 (864)
+++.+.+.++.|++.++|+.+.++++....... .......+.. .. .....+.+++||+++++++|++.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 899999999999999999999999965421111 1111111111 00 11246789999999999999999
Q ss_pred HhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEEEecC
Q 002928 225 LESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 225 ~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
+.. +|+++++|++|.++++++.+.+.+|++++||.||+|+|++.+..++++ ....+.+..+.+.. +++++..+
T Consensus 225 l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEec
Confidence 954 499999999999998888888889989999999999999999999986 44455566677754 56665555
Q ss_pred CC---CCCCC-------------cCCcccceecc-CCCCceEEEEecccccc----------CccCCCCeEEEcCCCC-C
Q 002928 304 KN---FMPRN-------------PAAWSAWNFLG-STGGKVCLTYWLNVVQN----------IEETRLPFLVTLNPDH-T 355 (864)
Q Consensus 304 ~~---~~p~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~l~p~~-~ 355 (864)
.. ..|++ ..+|.+-.... .|.+..+++.......+ +.+.....+.++++.. .
T Consensus 299 ~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 299 EKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc
Confidence 43 22322 22344422221 34455555443332211 1111122223333332 2
Q ss_pred Ccc-eeeeEEcCCCCCCHHHHHHHHhhhhhc--CCCCeEEEecc-CCCCCChhhHhHHHHHHHHhc
Q 002928 356 PEH-TLFKWSTSHPVPSVAASKASLELDHIQ--GKRGIWFCGAY-QGYGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 356 ~~~-~~~~w~~~~p~~~~~~~~~~~~l~~~~--~~~~l~~aG~~-~g~G~~e~a~~sG~~aA~~il 417 (864)
+.+ .+.+|..++|+|.+++.+....+.... ..+||..+|.| .|.|+ .+|+.+|+.+|+.|+
T Consensus 379 ~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~-~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGL-PDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCc-hHHHHHHHHHHHHhh
Confidence 333 667999999999999999999999832 34899999996 67799 999999999999875
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=4.1e-31 Score=302.67 Aligned_cols=395 Identities=18% Similarity=0.244 Sum_probs=261.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhC----CCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~----G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
+||+|||||+|||+||++|+++ |++|+|||+++++||++.|.+.+|+.+|.|+|+|+. .++++.++++++|++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~-~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE-RKKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc-CChHHHHHHHHcCCCcc
Confidence 6899999999999999999999 999999999999999999999999999999999975 56779999999998765
Q ss_pred ccc--ceeeEEecC-CCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHH
Q 002928 77 ISD--MSFSVSLDK-GQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVE 153 (864)
Q Consensus 77 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 153 (864)
... ........+ |+.+.++. . ........... + .+..+. ........ ....+.|+.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~p~--~---~~~~~~~~~~~-~----~~~~~~------~~~~~~~~-~~~~d~s~~e~l~ 144 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPVPT--K---IAPFVKTGLFS-L----GGKLRA------GMDFIRPA-SPGKDESVEEFVR 144 (462)
T ss_pred cccCCCCceEEEECCCceecCCC--C---hHHHhcCCCCC-c----hhhHHh------hhhhccCC-CCCCCcCHHHHHH
Confidence 432 111111122 44333221 0 11100000000 0 000000 00111111 1224689999999
Q ss_pred hcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHH-----------hhcC-CCc--------cCCCCcEEEecCC
Q 002928 154 TRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFC-----------RNHH-ALQ--------IFGRPQWLTVRSR 213 (864)
Q Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~-~~~--------~~~~~~~~~~~gG 213 (864)
+. +++.+.+.++.|++.++|+.++++++...+...+... .... ... ......+..+.||
T Consensus 145 ~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 223 (462)
T TIGR00562 145 RR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATG 223 (462)
T ss_pred Hh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchh
Confidence 88 7788889999999999999999988543322111100 0000 000 0011226789999
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCce
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQY 293 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (864)
++.+++.|++.+. .++|++|++|++|+..+++|+|++.+|++++||+||+|+|+..+..++++ .++...+.+..++|
T Consensus 224 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~l~~ 300 (462)
T TIGR00562 224 LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDKIHS 300 (462)
T ss_pred HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhcCCC
Confidence 9999999999995 27899999999999988899999988888999999999999999998875 55667888888888
Q ss_pred ee-ceEEEecCCCCCCCC-----------cC------Ccccceec-cCCCCceEEEEeccccc--cCc--------cCCC
Q 002928 294 VY-SDIFLHRDKNFMPRN-----------PA------AWSAWNFL-GSTGGKVCLTYWLNVVQ--NIE--------ETRL 344 (864)
Q Consensus 294 ~~-~~~~l~~d~~~~p~~-----------~~------~~~~~~~~-~~~~~~~~~~~~~~~~~--~l~--------~~~~ 344 (864)
.+ .++.+.++.+.++.. .. .|++-.+. ..+++..+++.++.... .+. +...
T Consensus 301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~ 380 (462)
T TIGR00562 301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVL 380 (462)
T ss_pred CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHH
Confidence 87 455666654433211 00 11111111 12344444544443211 110 0111
Q ss_pred CeEEEcCCCC-CCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-h-cCCCCeEEEecc-CCCCCChhhHhHHHHHHHHhcc
Q 002928 345 PFLVTLNPDH-TPEH-TLFKWSTSHPVPSVAASKASLELDH-I-QGKRGIWFCGAY-QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 345 ~~~~~l~p~~-~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~-~~~~~l~~aG~~-~g~G~~e~a~~sG~~aA~~ilg 418 (864)
+.+.++.+.. .+.. .+++|.+++|.+.+++......+.. . ...+||++||+| .|.|+ ++|+.+|+++|+.|+.
T Consensus 381 ~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i-~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 381 RDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGI-PDCIDQGKAAASDVLT 458 (462)
T ss_pred HHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcH-HHHHHHHHHHHHHHHH
Confidence 1222222221 1333 6789999999999998887777764 2 335799999996 57889 9999999999999864
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=2.4e-31 Score=303.81 Aligned_cols=402 Identities=18% Similarity=0.270 Sum_probs=258.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhC------CCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA------GVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVD 74 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~------G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~ 74 (864)
|+|+|||||+|||+||++|+++ |++|+||||++++||++.|.+.+|+.+|.|+|+++. ..+++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~-~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA-RNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc-CCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999999999999999999964 567888999999988
Q ss_pred cccccce--eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHH
Q 002928 75 MEISDMS--FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFV 152 (864)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (864)
....... ......+++..+++.. .+..........+... .+........+...........++.|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l 152 (463)
T PRK12416 81 EEMVYNETGISYIYSDNTLHPIPSD-TIFGIPMSVESLFSST-------LVSTKGKIVALKDFITKNKEFTKDTSLALFL 152 (463)
T ss_pred cceecCCCCceEEEECCeEEECCCC-CeecCCCChHHhhcCC-------cCCHHHHHHhhhhhccCCCCCCCCCCHHHHH
Confidence 6543211 1222223333333221 0000000000000000 0000000000111111111223678999999
Q ss_pred HhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHH-HHHHHhhc-----------CCCccCCCCcEEEecCChHHHHHH
Q 002928 153 ETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFS-VLSFCRNH-----------HALQIFGRPQWLTVRSRSRSYVDK 220 (864)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~gG~~~l~~~ 220 (864)
++. +++.+.+.++.|++.++|+.++++++..+... +..+.... ......+...+++++||+..++++
T Consensus 153 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 231 (463)
T PRK12416 153 ESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDR 231 (463)
T ss_pred HHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHH
Confidence 987 77888899999999999999999985433221 11111111 111112234577899999999999
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEE
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIF 299 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~ 299 (864)
|++.+.+ ++|++|++|++|+..+++|.|++.+|+++.||+||+|+|+..+.+++.+ +.....+..+.+.. .++.
T Consensus 232 l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~---~~l~~~~~~~~~~~~~~v~ 306 (463)
T PRK12416 232 LEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQS---NELNEQFHTFKNSSLISIY 306 (463)
T ss_pred HHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC---cchhHHHhcCCCCceEEEE
Confidence 9999964 6899999999999999999999888888999999999999998888864 23344455666655 4666
Q ss_pred EecCCCC--CCCCc---------------CCcccceecc-CCCCceEEEEeccc----cccC---cc-----CCCCeEEE
Q 002928 300 LHRDKNF--MPRNP---------------AAWSAWNFLG-STGGKVCLTYWLNV----VQNI---EE-----TRLPFLVT 349 (864)
Q Consensus 300 l~~d~~~--~p~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~----~~~l---~~-----~~~~~~~~ 349 (864)
+.++.+. +|... ..|.+-.+.. .++...+++.++.. ...+ .+ ...+.+.+
T Consensus 307 l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~ 386 (463)
T PRK12416 307 LGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEK 386 (463)
T ss_pred EEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHH
Confidence 7776432 23211 0111111222 23445555544431 1111 10 01111222
Q ss_pred cC-CCCCCc-ceeeeEEcCCCCCCHHHHHHHHhhhh-h-cCCCCeEEEecc-CCCCCChhhHhHHHHHHHHhcc
Q 002928 350 LN-PDHTPE-HTLFKWSTSHPVPSVAASKASLELDH-I-QGKRGIWFCGAY-QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 350 l~-p~~~~~-~~~~~w~~~~p~~~~~~~~~~~~l~~-~-~~~~~l~~aG~~-~g~G~~e~a~~sG~~aA~~ilg 418 (864)
+. ....|. ..+.+|.+++|.+..++......+.. . .+.++|++||+| .|.|+ ++|+.||+++|++|+.
T Consensus 387 ~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i-~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 387 SLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGI-GACIGNGKNTANEIIA 459 (463)
T ss_pred HhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccH-HHHHHHHHHHHHHHHH
Confidence 22 221222 36779999999999888777766654 2 345899999995 78888 9999999999999974
No 8
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.98 E-value=1.1e-30 Score=298.55 Aligned_cols=402 Identities=19% Similarity=0.271 Sum_probs=256.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC--CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG--VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G--~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
|+|+|||||+|||+||+.|+++| ++|+|||+++++||++.|.+.+|+.+|.|+|+++. .++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA-RKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC-CcHHHHHHHHHcCCcccee
Confidence 78999999999999999999988 89999999999999999999999999999998854 5677889999999875432
Q ss_pred cc--eeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 79 DM--SFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
.. .......+|+.+.++.. .+................... +.++. .... ........++.++++|+.+.
T Consensus 80 ~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~---~~~~~~~~~~~s~~e~l~~~- 150 (451)
T PRK11883 80 ANTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPFLFAGLVSPI-GKLRA---AADL---RPPRWKPGQDQSVGAFFRRR- 150 (451)
T ss_pred cCCCCcceEEECCeEEECCCC-CeeccCCCchhhhcCCCCCHH-HHHHh---hCcc---cCCCCCCCCCcCHHHHHHHh-
Confidence 21 11222344544433321 000000000000000000000 00000 0000 11111123678999999876
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHH-HHHHHhhcC----------CCcc-CCCCcEEEecCChHHHHHHHHHH
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFS-VLSFCRNHH----------ALQI-FGRPQWLTVRSRSRSYVDKVIEL 224 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~----------~~~~-~~~~~~~~~~gG~~~l~~~La~~ 224 (864)
+++.+.+.++.|++.++|+.++++++...... +..+..... .... .....+++++||+..+++.|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~ 230 (451)
T PRK11883 151 FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEK 230 (451)
T ss_pred ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHh
Confidence 88888999999999999999999885433221 111111110 0000 12346788999999999999998
Q ss_pred HhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEEEecC
Q 002928 225 LESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 225 ~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
+... +|++|++|++|+.++++|+|++.+|++++||+||+|+|+..+.+++.+ +...+.+..+++.. .++.+.++
T Consensus 231 l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l~~~ 305 (451)
T PRK11883 231 LPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKTIPSTSVATVALAFP 305 (451)
T ss_pred CcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhCCCCCceEEEEEEec
Confidence 8543 899999999999998899999989989999999999999999888763 34466677777766 56677777
Q ss_pred CCC--CCCCcC--------------Ccccceecc-CCCCceEEEEeccccc--cC--------ccCCCCeEEEcCC-CCC
Q 002928 304 KNF--MPRNPA--------------AWSAWNFLG-STGGKVCLTYWLNVVQ--NI--------EETRLPFLVTLNP-DHT 355 (864)
Q Consensus 304 ~~~--~p~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~--~l--------~~~~~~~~~~l~p-~~~ 355 (864)
.++ .+.... .|.+..+.. .|++..++........ .+ .+...+.+.+++. ...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 385 (451)
T PRK11883 306 ESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGD 385 (451)
T ss_pred cccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCC
Confidence 653 121100 011101111 2334444443332211 01 0011112222221 112
Q ss_pred C-cceeeeEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEEecc-CCCCCChhhHhHHHHHHHHhcc
Q 002928 356 P-EHTLFKWSTSHPVPSVAASKASLELDH-IQGKRGIWFCGAY-QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 356 ~-~~~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~-~g~G~~e~a~~sG~~aA~~ilg 418 (864)
+ ...+.+|.+++|.+.+++......+.. ....+||++||+| .|.|+ ++|+.||+++|++|+.
T Consensus 386 ~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i-~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 386 PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGL-PDCIAQAKRAAARLLA 450 (451)
T ss_pred ceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccH-HHHHHHHHHHHHHHHh
Confidence 2 236678999999999888666655544 2225799999997 46777 9999999999999864
No 9
>PLN02576 protoporphyrinogen oxidase
Probab=99.97 E-value=4e-30 Score=296.65 Aligned_cols=397 Identities=19% Similarity=0.214 Sum_probs=256.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhC-CCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA-GVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~-G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
+||+|||||+|||+||++|+++ |++|+||||++++||++.|.+.+|+.+|.|+|++. ..++.+..+++. |++.....
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~-gl~~~~~~ 90 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQ-PSDPELTSAVDS-GLRDDLVF 90 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhc-cCcHHHHHHHHc-CChhheec
Confidence 5899999999999999999999 99999999999999999999999999999999995 356667777777 77644321
Q ss_pred c---eeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 80 M---SFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
. .......+++.+.++.. ....+ ....++. .+.++... ..+.. .......++.|+++|+.+.
T Consensus 91 ~~~~~~~~~~~~g~~~~~p~~--~~~~~--~~~~~~~------~~~~~~~~---~~~~~-~~~~~~~~~~sv~~~l~~~- 155 (496)
T PLN02576 91 PDPQAPRYVVWNGKLRPLPSN--PIDLP--TFDLLSA------PGKIRAGL---GAFGW-KRPPPPGREESVGEFVRRH- 155 (496)
T ss_pred CCCCceEEEEECCEEEEcCCC--hHHhc--CcCcCCh------hHHHHHhH---HHhhc-cCCCCCCCCCcHHHHHHHh-
Confidence 1 11122234444433220 00000 0011110 01111111 01110 0111123688999999987
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHH------------hhcC--C-----------CccCCCCcEEEec
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFC------------RNHH--A-----------LQIFGRPQWLTVR 211 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~--~-----------~~~~~~~~~~~~~ 211 (864)
+++.+.+.++.|++.++|+.++++++.......+..+ .... . .........+.++
T Consensus 156 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (496)
T PLN02576 156 LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFR 235 (496)
T ss_pred cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEecc
Confidence 8899999999999999999999998544332221110 0000 0 0001223456789
Q ss_pred CChHHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCe-EEEEEC--CCc-EEecCEEEEccChHHHHHhhcCCCChHHHH
Q 002928 212 SRSRSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEG-RIEIRG--DDF-QRVYDGCIMAVHAPDALRMLGNQATFEEKR 286 (864)
Q Consensus 212 gG~~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~-~~V~~~--~G~-~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~ 286 (864)
||++.++++|++.+ + .+|++|++|++|++.+++ |.|++. +|+ +++||+||+|+|+..+.+++++ .++...+
T Consensus 236 gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~~~ 311 (496)
T PLN02576 236 GGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAAAD 311 (496)
T ss_pred chHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHHHH
Confidence 99999999999988 4 689999999999998876 666543 453 6999999999999999998875 4566788
Q ss_pred hhccCceee-ceEEEecCCCCCCCC------cC-----------------Ccccceec-cCCCCceEEEEeccccc--cC
Q 002928 287 VLGAFQYVY-SDIFLHRDKNFMPRN------PA-----------------AWSAWNFL-GSTGGKVCLTYWLNVVQ--NI 339 (864)
Q Consensus 287 ~l~~~~~~~-~~~~l~~d~~~~p~~------~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~--~l 339 (864)
.+..+.|.+ .++.+.++.+.++.+ .. .|.+..+. +.+++..+++.++.... .+
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~ 391 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGI 391 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCccc
Confidence 888888877 456677665544321 00 11111111 12344444444443211 11
Q ss_pred --------ccCCCCeEEEcCCC-C--CCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-hcCC--CCeEEEecc-CCCCCCh
Q 002928 340 --------EETRLPFLVTLNPD-H--TPEH-TLFKWSTSHPVPSVAASKASLELDH-IQGK--RGIWFCGAY-QGYGFHE 403 (864)
Q Consensus 340 --------~~~~~~~~~~l~p~-~--~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~--~~l~~aG~~-~g~G~~e 403 (864)
.+.+.+.+.++.+. . .+.. .+++|.+++|.+.+++......+.. +... +||++||+| .|.|+ +
T Consensus 392 ~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i-~ 470 (496)
T PLN02576 392 ASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVAL-G 470 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccH-H
Confidence 11111222223321 1 2222 5668999999999998877766665 3333 799999997 58888 9
Q ss_pred hhHhHHHHHHHHhccc
Q 002928 404 DGLKAGMIAAHGMLGK 419 (864)
Q Consensus 404 ~a~~sG~~aA~~ilg~ 419 (864)
+|+.||+++|+.|+..
T Consensus 471 ~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 471 KCVESGYEAADLVISY 486 (496)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 10
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-28 Score=279.08 Aligned_cols=395 Identities=19% Similarity=0.255 Sum_probs=250.0
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccce
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDMS 81 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~~ 81 (864)
+|+|||||++||+||+.|+++|++|+|||+++++||++.|...+|+.+|.|+|++. ..++++.++++++|++.......
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~-~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIF-KSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhc-cccHHHHHHHHHcCCCCceeecc
Confidence 69999999999999999999999999999999999999999999999999999985 45788999999999865432211
Q ss_pred -eeEEecCCCceeecCCCCCCchhhhhh-hcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCH
Q 002928 82 -FSVSLDKGQGCEWSSRNGMSGLFAQKK-NLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSE 159 (864)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (864)
......+++.+.+. ....... ..+. ..+..++....... .. .......++.++++|+... ..+
T Consensus 80 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~l~~~-~~~ 144 (434)
T PRK07233 80 TKTGYYVDGKLYPLG------TPLELLRFPHLS------LIDKFRLGLLTLLA-RR-IKDWRALDKVPAEEWLRRW-SGE 144 (434)
T ss_pred CceEEEECCeEecCC------CHHHHHcCCCCC------HHHHHHhHHHHHhh-hh-cccccccccccHHHHHHHh-cCH
Confidence 11111222222211 1111000 0001 01111111111110 00 0111122568999999987 466
Q ss_pred HHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccC-CCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcce
Q 002928 160 LFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIF-GRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEV 238 (864)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V 238 (864)
...+.++.|++...|+.+++++ ++..++..+......... ....+.+++||++.++++|++.+++.|++|++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 145 GVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred HHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6778899999999999999887 444444433322111000 122467899999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEEEecCCCCCCC------Cc
Q 002928 239 RSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPR------NP 311 (864)
Q Consensus 239 ~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~------~~ 311 (864)
++|+.+++++.+.+.+|++++||+||+|+|+..+.+++++ .++...+.+..+.+.. ..+.+.++.++.+. ..
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 300 (434)
T PRK07233 222 TSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDP 300 (434)
T ss_pred eEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCCCceeeecCC
Confidence 9999888888666667778999999999999998888864 4445556677777765 44566666553210 10
Q ss_pred -CCcccc----eec--cCCCCceE--EEEecccccc--------CccCCCCeEEEcCCCCCCcc----eeeeEEcCCCCC
Q 002928 312 -AAWSAW----NFL--GSTGGKVC--LTYWLNVVQN--------IEETRLPFLVTLNPDHTPEH----TLFKWSTSHPVP 370 (864)
Q Consensus 312 -~~~~~~----~~~--~~~~~~~~--~~~~~~~~~~--------l~~~~~~~~~~l~p~~~~~~----~~~~w~~~~p~~ 370 (864)
..+... ++. ..+++..+ +.++...... +.+.+.+.+.++.|...... .+.+|.++.|.+
T Consensus 301 ~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~ 380 (434)
T PRK07233 301 GAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIY 380 (434)
T ss_pred CCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccc
Confidence 001000 111 01123332 2222221111 11112233344555332211 345677888888
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEEeccC----CCCCChhhHhHHHHHHHHhccc
Q 002928 371 SVAASKASLELDHIQGKRGIWFCGAYQ----GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~l~~aG~~~----g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
.++.....+.+. ++.+|||+||++. +.++ ++|+.||++||+.|+..
T Consensus 381 ~~g~~~~~~~~~--~~~~~l~~aG~~~~~~~~~~~-~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 381 EPGYLDKIPPYD--TPIEGLYLAGMSQIYPEDRSI-NGSVRAGRRVAREILED 430 (434)
T ss_pred cCchhhcCCCcc--cCcCCEEEeCCcccCCccCch-hHHHHHHHHHHHHHhhh
Confidence 776544333332 3568999999942 2255 99999999999999754
No 11
>PLN02612 phytoene desaturase
Probab=99.96 E-value=2.5e-28 Score=281.83 Aligned_cols=412 Identities=15% Similarity=0.208 Sum_probs=241.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee-CCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
++|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|+.+|.|+|++. ..++++.++++++|++.....
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~-g~~~~~~~ll~elG~~~~~~~ 172 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNVQNLFGELGINDRLQW 172 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEe-CCCchHHHHHHHhCCccccee
Confidence 47999999999999999999999999999999999999999875 8899999999995 467889999999999764332
Q ss_pred ce--eeEEec--CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc
Q 002928 80 MS--FSVSLD--KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR 155 (864)
Q Consensus 80 ~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (864)
.. ...... .+....+.....++..+......+.....-...+.+++..................++.|+.+|+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~ 252 (567)
T PLN02612 173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQ 252 (567)
T ss_pred cccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhc
Confidence 11 111111 12111111111111111111111100000001111111111000000000111123678999999999
Q ss_pred CCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCCh-HHHHHHHHHHHhhcCceEEe
Q 002928 156 GYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRS-RSYVDKVIELLESLGCQIKT 234 (864)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~La~~~~~~G~~I~~ 234 (864)
+.++.+.+.++.|++.+.++.++++++. ..++..+... +.........++.|+. ..+++.|++.+++.|++|++
T Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~p~~~S~---~~~l~~l~~~--l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l 327 (567)
T PLN02612 253 GVPDRVNDEVFIAMSKALNFINPDELSM---QCILIALNRF--LQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRL 327 (567)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHhhH---HHHHHHHHHH--HhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEe
Confidence 9999999999999999999999988844 3333322211 1111223444566665 68999999999999999999
Q ss_pred CcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHHHHHhhcCCC-ChHHHHhhccCceee-ceEEEecCCCCCCC-
Q 002928 235 GCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQA-TFEEKRVLGAFQYVY-SDIFLHRDKNFMPR- 309 (864)
Q Consensus 235 ~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~-~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~- 309 (864)
|++|++|+.++++ +.|.+.+|++++||+||+|+|+..+.++++... +....+.+..+.+.. .++.+.++++++..
T Consensus 328 ~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~ 407 (567)
T PLN02612 328 NSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTY 407 (567)
T ss_pred CCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCC
Confidence 9999999986555 347777888899999999999988888877432 224444555555544 56778888876421
Q ss_pred CcCCccc----ceecc--------CCCCceEEEEecccc--------ccCccCCCCeEEEcCCCCCC----cceeeeEE-
Q 002928 310 NPAAWSA----WNFLG--------STGGKVCLTYWLNVV--------QNIEETRLPFLVTLNPDHTP----EHTLFKWS- 364 (864)
Q Consensus 310 ~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~l~p~~~~----~~~~~~w~- 364 (864)
....++. ..+.. .+++..++....... +.+.+.+.+.+.+++|.... ...+..|.
T Consensus 408 ~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~ 487 (567)
T PLN02612 408 DHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHV 487 (567)
T ss_pred CceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEE
Confidence 1111100 00000 122233332222111 11222223334455655311 11111211
Q ss_pred cCCCC----CCHHHHHHHHhhhhhcCCCCeEEEeccCCCC---CChhhHhHHHHHHHHhcccc
Q 002928 365 TSHPV----PSVAASKASLELDHIQGKRGIWFCGAYQGYG---FHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 365 ~~~p~----~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G---~~e~a~~sG~~aA~~ilg~~ 420 (864)
...|. ..++.... +.....+.+|+|+||+|+..+ .+++|+.||++||+.|+...
T Consensus 488 v~~P~a~~~~~pg~~~~--rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 488 VKTPRSVYKTVPNCEPC--RPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred eccCCceEEeCCCCccc--CccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 11221 01111111 111235678999999987543 33999999999999998543
No 12
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=2e-27 Score=273.00 Aligned_cols=399 Identities=17% Similarity=0.235 Sum_probs=252.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccccc-
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD- 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~- 79 (864)
+||+|||||+|||+||++|+++|++|+|+|+++++||++.|...+|+.+|.|+|++. ..++.+.++++++|.......
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~-~~~~~~~~l~~~l~~~~~~~~~ 83 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFF-SKSPEVMDLWNEILPDDDFLLR 83 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceec-cCCHHHHHHHHHhcCCCccccc
Confidence 589999999999999999999999999999999999999999999999999999985 467889999999986222211
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCH
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSE 159 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (864)
........+|+.+.++.. ...... .+. ... . ......++..... ...++.|+++|+.++ +++
T Consensus 84 ~~~~~~~~~g~~~~~p~~-----~~~~l~-~~~--~~~----~---~~~~~~~~~~~~~--~~~~~~s~~e~l~~~-~g~ 145 (479)
T PRK07208 84 PRLSRIYYRGKFFDYPLK-----AFDALK-NLG--LWR----T---AKCGASYLKARLR--PRKEEDSFEDWVINR-FGR 145 (479)
T ss_pred cccceEEECCEEecCCcc-----hhHHHH-hCC--HhH----H---HHHHHHHHHHhcC--CCCCCCCHHHHHHHh-hCH
Confidence 111111123333322210 000000 000 000 0 1111111111111 112679999999987 788
Q ss_pred HHHHHHHhhhhhcccCCChhhhhcCC---------HHHHHH-HHhhc-C------CCccCCCCcEEEecCChHHHHHHHH
Q 002928 160 LFQKAYLVPVCGSIWSCSSEKVMSCS---------AFSVLS-FCRNH-H------ALQIFGRPQWLTVRSRSRSYVDKVI 222 (864)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~-~~~~~-~------~~~~~~~~~~~~~~gG~~~l~~~La 222 (864)
.+.+.++.|++.++|+.++++++... ....+. .+... . .........+.+++||++.+++.|+
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~ 225 (479)
T PRK07208 146 RLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAA 225 (479)
T ss_pred HHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHH
Confidence 88999999999999999999985431 111111 11110 0 0000011356788999999999999
Q ss_pred HHHhhcCceEEeCcceEEEEEeCCeE-E-EEE--CCCc--EEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-
Q 002928 223 ELLESLGCQIKTGCEVRSVLQYGEGR-I-EIR--GDDF--QRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY- 295 (864)
Q Consensus 223 ~~~~~~G~~I~~~~~V~~I~~~~~~~-~-V~~--~~G~--~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~- 295 (864)
+.+++.|++|++|++|++|+.+++++ . ++. .+|+ ++.||+||+|+|+..+.+++++..+....+.+..+++.+
T Consensus 226 ~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 226 EKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCccee
Confidence 99999999999999999999987764 2 322 2353 588999999999998888777545566666677777776
Q ss_pred ceEEEecCCCC-CCCC-------cC------CcccceeccCCCCc-eEE--EEecccccc---C-----ccCCCCeEEEc
Q 002928 296 SDIFLHRDKNF-MPRN-------PA------AWSAWNFLGSTGGK-VCL--TYWLNVVQN---I-----EETRLPFLVTL 350 (864)
Q Consensus 296 ~~~~l~~d~~~-~p~~-------~~------~~~~~~~~~~~~~~-~~~--~~~~~~~~~---l-----~~~~~~~~~~l 350 (864)
.++.+.++... .+.. .. .+.++.-...|++. ..+ .+....... + .+...+.+.++
T Consensus 306 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l 385 (479)
T PRK07208 306 ITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL 385 (479)
T ss_pred EEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc
Confidence 45666666442 1211 00 01111111123333 222 121111111 1 11111122233
Q ss_pred CC--CCCCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhccc
Q 002928 351 NP--DHTPEH-TLFKWSTSHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 351 ~p--~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
++ ...+.. .+.+|..++|++.+++......+.. .++.+||++||+|. .+.. ++|+.||.++|+.|.+.
T Consensus 386 ~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~-d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 386 GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQ-DHSMLTAMLAVENIIAG 460 (479)
T ss_pred CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCCh-hHHHHHHHHHHHHHhcC
Confidence 32 111222 4668899999999999888877764 45578999999854 3344 89999999999999764
No 13
>PLN02268 probable polyamine oxidase
Probab=99.96 E-value=2.7e-28 Score=276.66 Aligned_cols=384 Identities=17% Similarity=0.185 Sum_probs=232.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCC-CchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRV-TYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~-~~~~~~~l~~~lG~~~~~~~ 79 (864)
.+|+|||||+|||+||++|.++|++|+||||++++|||+.|....|+.+|.|+++++.. ..+.+.++++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 48999999999999999999999999999999999999999888899999999999753 23357799999999765433
Q ss_pred ceeeEEecCC-CceeecCCCCCCchhhhhhhcCChHHHHHHHHH-HhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC-
Q 002928 80 MSFSVSLDKG-QGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREI-IKFNDDVLSYLEDLENNADIDRNETLGQFVETRG- 156 (864)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~- 156 (864)
....+....+ ..+.+.. .. ...+.+.....+... .++.... .... ....++.|+.+|++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~s~~~~~~~~~~ 145 (435)
T PLN02268 81 GDNSVLYDHDLESYALFD-MD--------GNQVPQELVTKVGETFERILEET----EKVR--DEHEEDMSLLQAISIVLE 145 (435)
T ss_pred CCccccccccccccceec-CC--------CCCCCHHHHHHHHHHHHHHHHHH----HHHH--hccCCCcCHHHHHHHHhh
Confidence 2222111111 1111100 00 001111111111111 1111111 1110 11235778888765421
Q ss_pred ---------CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhh
Q 002928 157 ---------YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLES 227 (864)
Q Consensus 157 ---------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~ 227 (864)
+.+.+...++.| +.+.++.++++++... . .... .+. +....+.+|+..++++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~---~----~~~~---~~~-g~~~~~~~G~~~l~~~l~~---- 209 (435)
T PLN02268 146 RHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKS---W----DQEE---LLE-GGHGLMVRGYDPVINTLAK---- 209 (435)
T ss_pred hCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhh---c----CCcc---ccC-CCceeecCCHHHHHHHHhc----
Confidence 334444455566 3456788888774221 1 1111 111 2234678899999999976
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHh---hcCCCChHHHHhhccCceee-ceEEEecC
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRM---LGNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
+++|++|++|++|++.+++|.|++.+|+++.||+||+|+|+..+.+. +.+.+|+...+.+..+.+.. .++.+.++
T Consensus 210 -~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~ 288 (435)
T PLN02268 210 -GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFD 288 (435)
T ss_pred -cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeC
Confidence 55799999999999998999999999888999999999999988642 22446677788888888876 67889999
Q ss_pred CCCCCCCcCC---c----ccceecc--CCCCceEEEEeccccc-----cC-----ccCCCCeEEEcCCCC-CCc-ceeee
Q 002928 304 KNFMPRNPAA---W----SAWNFLG--STGGKVCLTYWLNVVQ-----NI-----EETRLPFLVTLNPDH-TPE-HTLFK 362 (864)
Q Consensus 304 ~~~~p~~~~~---~----~~~~~~~--~~~~~~~~~~~~~~~~-----~l-----~~~~~~~~~~l~p~~-~~~-~~~~~ 362 (864)
.++|+..... . ....+.. .+.+..++..+..... .+ .+.+...+.++++.. .+. ..+++
T Consensus 289 ~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~ 368 (435)
T PLN02268 289 SVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSR 368 (435)
T ss_pred CCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecc
Confidence 9888753210 0 0111111 1122333333332211 11 111112223333321 122 25567
Q ss_pred EEc------CCCCCCHHHH-HHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 363 WST------SHPVPSVAAS-KASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 363 w~~------~~p~~~~~~~-~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
|.. .+..+.++.. .....+. ++.++|||||+++ +.|++++|+.||.++|+.|+.
T Consensus 369 W~~dp~~~G~~~~~~~g~~~~~~~~l~--~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 369 WGSDPNSLGCYSYDLVGKPHDLYERLR--APVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred cCCCCCCCccCCCCCCCCCHHHHHHHh--CCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 772 1222233321 2222222 4567899999964 456779999999999999874
No 14
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.96 E-value=7.1e-28 Score=272.99 Aligned_cols=407 Identities=17% Similarity=0.197 Sum_probs=246.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe-eCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~-~~~~~~~~~~~~lg~~~~~~~~ 79 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFF-GCYANLFRLMKKVGAEDNLLLK 79 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEec-CchHHHHHHHHHcCCccccccc
Confidence 689999999999999999999999999999999999999984 57999999999996 4678899999999987554322
Q ss_pred eeeE-Eec-CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHH--HHHHHhh---c---cCCcCCCCccHHH
Q 002928 81 SFSV-SLD-KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDV--LSYLEDL---E---NNADIDRNETLGQ 150 (864)
Q Consensus 81 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~---~~~~~~~~~s~~~ 150 (864)
.... ... .++...+.....+..++.....+++..... ..+.+++.... ....... . ......++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls-~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 158 (474)
T TIGR02732 80 EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLK-WVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAE 158 (474)
T ss_pred cceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCC-HHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHH
Confidence 2111 111 222221111111111211111111100000 11111111111 0000000 0 1111235799999
Q ss_pred HHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHH-HHHHHHHHHhhcC
Q 002928 151 FVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRS-YVDKVIELLESLG 229 (864)
Q Consensus 151 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~La~~~~~~G 229 (864)
|+++++.++...+.++.|++.+.++.++++++.......+.++... .......+++||... +.+.+.+.+++.|
T Consensus 159 ~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~-----~~~s~~~~~~g~~~~~l~~pl~~~L~~~G 233 (474)
T TIGR02732 159 WFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAK-----TEASKLRMLKGSPDKYLTKPILEYIEARG 233 (474)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCcceeeeecCCcchhHHHHHHHHHHHCC
Confidence 9999999988899999999999999999999655555444443321 122355567777766 6777999999999
Q ss_pred ceEEeCcceEEEEEeC--Ce---E-EEEECCC---cEEecCEEEEccChHHHHHhhcCCCC-hHHHHhhccCceee-ceE
Q 002928 230 CQIKTGCEVRSVLQYG--EG---R-IEIRGDD---FQRVYDGCIMAVHAPDALRMLGNQAT-FEEKRVLGAFQYVY-SDI 298 (864)
Q Consensus 230 ~~I~~~~~V~~I~~~~--~~---~-~V~~~~G---~~~~ad~VV~A~~~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~~ 298 (864)
++|+++++|++|+.++ ++ + .|.+.+| +++.||+||+|+|++.+.+|+++... ......+..+.+.+ .++
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v 313 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATV 313 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEE
Confidence 9999999999998864 22 2 3334433 46899999999999999999985211 23455666777665 577
Q ss_pred EEecCCCCCCCC----------cCCcc--------cceecc----------CCCC-ceEEEEeccc---c-----ccCcc
Q 002928 299 FLHRDKNFMPRN----------PAAWS--------AWNFLG----------STGG-KVCLTYWLNV---V-----QNIEE 341 (864)
Q Consensus 299 ~l~~d~~~~p~~----------~~~~~--------~~~~~~----------~~~~-~~~~~~~~~~---~-----~~l~~ 341 (864)
.|.+++.+.... ....+ .|.++. .+.+ ...+...+.. . +.+.+
T Consensus 314 ~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 393 (474)
T TIGR02732 314 QLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAK 393 (474)
T ss_pred EEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHH
Confidence 788875432211 00010 122210 0111 1211111111 1 11222
Q ss_pred CCCCeEEEcCCCCCCcce----eeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCC---hhhHhHHHHHHH
Q 002928 342 TRLPFLVTLNPDHTPEHT----LFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMIAAH 414 (864)
Q Consensus 342 ~~~~~~~~l~p~~~~~~~----~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~---e~a~~sG~~aA~ 414 (864)
.+.+.+.+++|....... +.+...+.+...|+..... +....+.+|+|+||||+..|++ |+|+.||++||+
T Consensus 394 ~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~--P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~ 471 (474)
T TIGR02732 394 RVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFR--PDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAA 471 (474)
T ss_pred HHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccC--CCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHH
Confidence 233444556665332222 2233333334335443222 2234567899999999888766 999999999999
Q ss_pred Hhc
Q 002928 415 GML 417 (864)
Q Consensus 415 ~il 417 (864)
.|+
T Consensus 472 ~i~ 474 (474)
T TIGR02732 472 AIL 474 (474)
T ss_pred HhC
Confidence 874
No 15
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.96 E-value=1.1e-27 Score=272.86 Aligned_cols=405 Identities=16% Similarity=0.229 Sum_probs=238.3
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe-eCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+|+|||||++||+||++|+++|++|+|||+++++||++.|.. .+|+.+|.|.|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~-~~~~~~~~l~~~lg~~~~~~~~ 79 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNMLQLLKELNIEDRLQWK 79 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceec-cCCchHHHHHHHcCCccceeec
Confidence 599999999999999999999999999999999999999985 47899999999985 5678899999999987543221
Q ss_pred eeeEEe---c-CCCceeecCCCCCCchhhhhhhcCC-hHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc
Q 002928 81 SFSVSL---D-KGQGCEWSSRNGMSGLFAQKKNLLN-PYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR 155 (864)
Q Consensus 81 ~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (864)
.....+ . .+....+.. ..++..+......+. ... ....+..++..................++.|+.+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 157 (453)
T TIGR02731 80 SHSMIFNQPDKPGTFSRFDF-PDIPAPFNGVAAILRNNDM-LTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQ 157 (453)
T ss_pred CCceEEecCCCCcceeeccC-CCCCCCHHHHHHHhcCcCC-CCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHc
Confidence 111111 1 111111110 011111111000000 000 001111111111110000001111123678999999999
Q ss_pred CCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHH-HHhhcCCCccCCCCcEEEecCC-hHHHHHHHHHHHhhcCceEE
Q 002928 156 GYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLS-FCRNHHALQIFGRPQWLTVRSR-SRSYVDKVIELLESLGCQIK 233 (864)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~La~~~~~~G~~I~ 233 (864)
++++.+.+.++.|++.++++.++++++.......+. ++... ......+..|+ +..+++.|.+.+.+.|++|+
T Consensus 158 ~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~------~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~ 231 (453)
T TIGR02731 158 GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQER------HGSKMAFLDGAPPERLCQPIVDYITSRGGEVR 231 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcC------CCCeeEeecCCChHHHHHHHHHHHHhcCCEEe
Confidence 999999999999999999999998884333332222 12111 11112233443 47899999999999999999
Q ss_pred eCcceEEEEEeCCe-E-EEEECCCc-----EEecCEEEEccChHHHHHhhcCCCC-hHHHHhhccCceee-ceEEEecCC
Q 002928 234 TGCEVRSVLQYGEG-R-IEIRGDDF-----QRVYDGCIMAVHAPDALRMLGNQAT-FEEKRVLGAFQYVY-SDIFLHRDK 304 (864)
Q Consensus 234 ~~~~V~~I~~~~~~-~-~V~~~~G~-----~~~ad~VV~A~~~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~~~l~~d~ 304 (864)
+|++|++|+..+++ + .|++.+|+ ++.||.||+|+|+..+.++++...+ ....+.++.+++.. .++.+.++.
T Consensus 232 l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 311 (453)
T TIGR02731 232 LNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDR 311 (453)
T ss_pred CCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEcc
Confidence 99999999875544 4 46665554 7899999999999998888874322 33445566666644 566777777
Q ss_pred CCCCCCcCCcc------------cceeccCCCCceEEEEecccccc--------CccCCCCeEEEcCCCC----CCcc-e
Q 002928 305 NFMPRNPAAWS------------AWNFLGSTGGKVCLTYWLNVVQN--------IEETRLPFLVTLNPDH----TPEH-T 359 (864)
Q Consensus 305 ~~~p~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~l~p~~----~~~~-~ 359 (864)
++.+.....+. ...+...+++..++.+....... +.+.+.+.+.+++|.. .+.. +
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~ 391 (453)
T TIGR02731 312 KLTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKIL 391 (453)
T ss_pred ccCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEE
Confidence 65432210010 00011122334555544432211 1122222334455532 1222 3
Q ss_pred eeeEE---cCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCC---CCChhhHhHHHHHHHHhc
Q 002928 360 LFKWS---TSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGY---GFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 360 ~~~w~---~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~---G~~e~a~~sG~~aA~~il 417 (864)
.+.|. +..+...++.....+.+ .++.+|||+||+|+.. |.+|+|+.||++||+.|.
T Consensus 392 ~~~~~~~p~a~~~~~pg~~~~~~~~--~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 392 KYKVVKTPRSVYKTTPGRQQYRPHQ--KTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEEEECCCceeccCCCChhhCccc--cCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 34444 22222333322222222 3567899999998633 445999999999999873
No 16
>PLN02487 zeta-carotene desaturase
Probab=99.96 E-value=9.2e-28 Score=272.91 Aligned_cols=413 Identities=14% Similarity=0.165 Sum_probs=254.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe-eCCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
|+|+|||||++||++|+.|+++|++|+|+|+++++||++.|+. .+|..+|.|.|++. +.++++.++++++|++.....
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~-~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFF-GCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEec-CCcHHHHHHHHhcCCcccccc
Confidence 4899999999999999999999999999999999999999996 47899999999985 467889999999999765432
Q ss_pred ce-eeEEec-CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHH--HHHHHhh------ccCCcCCCCccHH
Q 002928 80 MS-FSVSLD-KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDV--LSYLEDL------ENNADIDRNETLG 149 (864)
Q Consensus 80 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~s~~ 149 (864)
.. ...... ++..-.......+..++.....++....+. ..+.++..... ...+... .......++.++.
T Consensus 155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls-~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~ 233 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLE-PYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFS 233 (569)
T ss_pred cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCC-HHHHHhhcccccccchhhhccCccccccccccccCCcHH
Confidence 11 111111 122111111111111111011110000000 00111110000 0000000 0112233679999
Q ss_pred HHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHH-HHHHHHHHHhhc
Q 002928 150 QFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRS-YVDKVIELLESL 228 (864)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~La~~~~~~ 228 (864)
+|+.+++.++...+.++.|++.+.++.++++++...++..+.++... .......+++||+.. +++.+++.++++
T Consensus 234 ~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~-----~~~~~l~~~~Gg~~~~l~~pl~~~L~~~ 308 (569)
T PLN02487 234 DWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATK-----TEASLLRMLKGSPDVRLSGPIAKYITDR 308 (569)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc-----CCcceeeecCCCchHHHHHHHHHHHHHc
Confidence 99999988888899999999999999999999766666655443211 112346688999994 999999999999
Q ss_pred CceEEeCcceEEEEEeC--Ce----EEEEE---CCCcEEecCEEEEccChHHHHHhhcCCCC-hHHHHhhccCceee-ce
Q 002928 229 GCQIKTGCEVRSVLQYG--EG----RIEIR---GDDFQRVYDGCIMAVHAPDALRMLGNQAT-FEEKRVLGAFQYVY-SD 297 (864)
Q Consensus 229 G~~I~~~~~V~~I~~~~--~~----~~V~~---~~G~~~~ad~VV~A~~~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~ 297 (864)
|++|+++++|++|+.++ ++ +.|++ .+++++.+|.||+|+|...+.+|+++... ......+..+.+.+ .+
T Consensus 309 Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~t 388 (569)
T PLN02487 309 GGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVT 388 (569)
T ss_pred CCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEE
Confidence 99999999999999873 22 34555 23446889999999999999999986422 12244555665554 67
Q ss_pred EEEecCCCCCCCC--------------cCCc----ccceeccC-----------CCCceEEEEeccccc--------cCc
Q 002928 298 IFLHRDKNFMPRN--------------PAAW----SAWNFLGS-----------TGGKVCLTYWLNVVQ--------NIE 340 (864)
Q Consensus 298 ~~l~~d~~~~p~~--------------~~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~--------~l~ 340 (864)
+.|.+|+.+.... ...| ..|.++.. ......+...+.... .+.
T Consensus 389 v~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~ 468 (569)
T PLN02487 389 VQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIV 468 (569)
T ss_pred EEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHH
Confidence 8888886543211 0001 01222100 001122222222111 122
Q ss_pred cCCCCeEEEcCCCCCCcceee--eEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCC---hhhHhHHHHHHHH
Q 002928 341 ETRLPFLVTLNPDHTPEHTLF--KWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMIAAHG 415 (864)
Q Consensus 341 ~~~~~~~~~l~p~~~~~~~~~--~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~---e~a~~sG~~aA~~ 415 (864)
+.+.+.+.+++|.....++.. .-....+.+...+.....++....+.+|+|+||||+-.+++ |+|+.||.+||+.
T Consensus 469 ~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~ 548 (569)
T PLN02487 469 EKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAY 548 (569)
T ss_pred HHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHH
Confidence 223334455666644333221 22234444444333222223344678999999999877776 9999999999999
Q ss_pred hcccc
Q 002928 416 MLGKS 420 (864)
Q Consensus 416 ilg~~ 420 (864)
|+...
T Consensus 549 i~~~~ 553 (569)
T PLN02487 549 ICEAG 553 (569)
T ss_pred HHHHh
Confidence 97544
No 17
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.96 E-value=1.5e-27 Score=244.77 Aligned_cols=205 Identities=17% Similarity=0.269 Sum_probs=177.1
Q ss_pred CeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhh
Q 002928 631 HEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAV 709 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~ 709 (864)
.+|||||||+|.++..+++. ++++|+|+|+|+++++.++++++..++.++++++..|+.+.+..++||+|++.++++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999988 46899999999999999999999999988999999999766644689999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccc
Q 002928 710 GHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 710 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~ 789 (864)
.++..+|+++.++|||||++++.++...... .....++. ..+++..++.+.+.+ +||++.+.++++.
T Consensus 81 --~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~------~~~~s~~~~~~~l~~-~Gf~~~~~~~~~~ 147 (224)
T smart00828 81 --KDKMDLFSNISRHLKDGGHLVLADFIANLLS----AIEHEETT------SYLVTREEWAELLAR-NNLRVVEGVDASL 147 (224)
T ss_pred --CCHHHHHHHHHHHcCCCCEEEEEEcccccCc----cccccccc------cccCCHHHHHHHHHH-CCCeEEEeEECcH
Confidence 4579999999999999999999887532210 01111222 236788999888886 8999999999999
Q ss_pred cHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcCCCC
Q 002928 790 HYYQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRPSNV 851 (864)
Q Consensus 790 ~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~~~~ 851 (864)
+|.+++ |..+|.++++++...++++.|.|+|.+|+.+|++ |+.|.+++.|++++|+..-
T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~ 206 (224)
T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEFL 206 (224)
T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEeccccC
Confidence 999876 9999999999999888999999999999999998 9999999999999998543
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.96 E-value=1.3e-26 Score=250.53 Aligned_cols=272 Identities=19% Similarity=0.205 Sum_probs=207.6
Q ss_pred CchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCc
Q 002928 568 NTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSE--HEDLEVAQMRKVSLLIQKARV-----SKGHEVLEIGCGW 640 (864)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~--~~~l~~aq~~~~~~~~~~l~~-----~~~~~vLDiGcG~ 640 (864)
.+....+++|..|||..+++|+.++++.|+ .+||... ..++.++|.++++.+++.+.+ +++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 455778889999999999999999998764 6888764 678999999999999999987 7889999999999
Q ss_pred hHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHH
Q 002928 641 GTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFG 719 (864)
Q Consensus 641 G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~ 719 (864)
|.++..++++.+++|+|||+|+.|++.|+++.+..++.++++++++|+.+++ ++++||+|++.++++|+ .+...+++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~--~d~~~~l~ 207 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM--PDKRKFVQ 207 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc--CCHHHHHH
Confidence 9999999997789999999999999999999998888889999999999988 77899999999999999 45789999
Q ss_pred HHHhccccCcEEEEEEecCCCccccc--ccCc-----cchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHH
Q 002928 720 CCESLLAEHGLLLLQFISVPDQCYDE--HRLS-----PGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYY 792 (864)
Q Consensus 720 ~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~-----~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~ 792 (864)
++.++|||||++++.++......... .... ..+...+.+|. +.+..++.+.+++ +||+.+.++++..+..
T Consensus 208 e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~-aGf~~v~~~d~s~~v~ 284 (340)
T PLN02244 208 ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAES-LGLQDIKTEDWSEHVA 284 (340)
T ss_pred HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-CCCCeeEeeeCcHHHH
Confidence 99999999999999887543321111 0000 01122333332 3478888888886 9999999998886655
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHH--HHHHHHHhcCcccEEEEEEEcCC
Q 002928 793 QTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYF--DYCAAGFKSRTLGDYQIVFSRPS 849 (864)
Q Consensus 793 ~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~--~~~~~~f~~~~~~~~~~~~~~~~ 849 (864)
+......+... .+.-+... .......|+--+ .....+|+.|.+...-|+++||.
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340)
T PLN02244 285 PFWPAVIKSAL-TLKGLFGL--LTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340)
T ss_pred HHHHHHHHHhc-CHHHHHHH--HHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEEeCCC
Confidence 44332221111 11111111 112223344333 34677999999999999999984
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=99.95 E-value=2.7e-26 Score=265.53 Aligned_cols=385 Identities=14% Similarity=0.111 Sum_probs=229.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC--C--eeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--G--VDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~--G--~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
+||+|||||++||+||..|+++|++|+|||+++++||++.|...+ | ..+|+|+++++......+..+.+++|++..
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 589999999999999999999999999999999999999999875 3 489999999987555557789999998776
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
.......++..+|......... .......+.++ ....+..... ...++.|+++|++...
T Consensus 241 ~~~~~~~~~~~~G~~v~~~~~~---------------~~~~~~~~~l~---~~~~l~~~~~---~~~~d~Sl~~~le~~~ 299 (738)
T PLN02529 241 KVRDNCPLYKPDGALVDKEIDS---------------NIEFIFNKLLD---KVTELRQIMG---GFANDISLGSVLERLR 299 (738)
T ss_pred ccCCCceEEeCCCcCcchhhhh---------------hHHHHHHHHHH---HHHHHHHhcc---cCccCCCHHHHHHHHH
Confidence 5543333333444333111100 00000111111 1111111111 1235788999987542
Q ss_pred ------CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCc
Q 002928 157 ------YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGC 230 (864)
Q Consensus 157 ------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~ 230 (864)
..+.. ..++.-...........+++..++..... ... ....+....+.||+..++++|++.+
T Consensus 300 ~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~----~~~--~e~~G~~~~i~GG~~~Li~aLA~~L----- 367 (738)
T PLN02529 300 QLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQ----DDP--YEMGGDHCFLAGGNWRLINALCEGV----- 367 (738)
T ss_pred hhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhh----ccc--cccCCceEEECCcHHHHHHHHHhcC-----
Confidence 22211 12222222222333333333333332211 100 1123456789999999999999854
Q ss_pred eEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHh---hcCCCChHHHHhhccCceee-ceEEEecCCCC
Q 002928 231 QIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRM---LGNQATFEEKRVLGAFQYVY-SDIFLHRDKNF 306 (864)
Q Consensus 231 ~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~ 306 (864)
.|++|++|++|++.+++|+|++. +++++||+||+|+|+.++.+. +.+.+|....+++..++|.. .++.+.++.++
T Consensus 368 ~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 368 PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 69999999999999999999764 458999999999999998742 33456777788999999987 78999999998
Q ss_pred CCCCcCCccc--------------ceeccCCCCceEEEEeccccc----cC-----ccCCCCeEEEcCCC------CCCc
Q 002928 307 MPRNPAAWSA--------------WNFLGSTGGKVCLTYWLNVVQ----NI-----EETRLPFLVTLNPD------HTPE 357 (864)
Q Consensus 307 ~p~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~----~l-----~~~~~~~~~~l~p~------~~~~ 357 (864)
|+.....+.. +++...+.+..++.+..+... .+ .+.+...+.++++. .+..
T Consensus 447 W~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~ 526 (738)
T PLN02529 447 WGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQ 526 (738)
T ss_pred ccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceE
Confidence 8754221110 011111223333333322111 11 11111122223321 1122
Q ss_pred ceeeeEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcccc
Q 002928 358 HTLFKWST------SHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 358 ~~~~~w~~------~~p~~~~~~~~-~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
...++|.. ++....++... ....+.. +..++|||||+++ ++|++++|+.||.++|+.|+...
T Consensus 527 ~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~-pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 527 TICTRWGSDPLSYGSYSHVRVQSSGSDYDILAE-SVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVA 598 (738)
T ss_pred EEEccCCcCCCCCCCcccCCCCCchhHHHHHhC-CCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence 35667873 12222221111 1122222 2357899999964 44566999999999999998643
No 20
>PLN02568 polyamine oxidase
Probab=99.95 E-value=1.4e-25 Score=255.65 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=188.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC-----CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG-----VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G-----~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~ 75 (864)
+||+|||||++||+||++|++.| ++|+|||+++++||++.|.+..|+.+|.|+++++......+.++++++|+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence 47999999999999999999887 9999999999999999999999999999999998655667789999999854
Q ss_pred ccccceeeEEecCCCceeecC-CCCCCchhhhhhhcCChHHHHHHHHHHhHHHHH---------HH---HHHhhccCCcC
Q 002928 76 EISDMSFSVSLDKGQGCEWSS-RNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDV---------LS---YLEDLENNADI 142 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~ 142 (864)
..........+ .+....+.. ...++... ..........+.+..... .+ +..........
T Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (539)
T PLN02568 86 SDEPWECMDGF-PDRPKTVAEGGFEVDPSI-------VESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCES 157 (539)
T ss_pred ccCcceecccc-cccceEEccCCcCCCHHH-------HHHHHHHHHHHHHHhhcccccccccccccccccchhccchhcc
Confidence 33211000000 000011110 01111000 000001111111000000 00 00000000001
Q ss_pred CCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhh-cC-C-----Ccc--C-----CCCcEE
Q 002928 143 DRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRN-HH-A-----LQI--F-----GRPQWL 208 (864)
Q Consensus 143 ~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~-----~~~--~-----~~~~~~ 208 (864)
..+.++++|++++ +.+ +.+....|...+.++...++++..++......+.. .. + ... . ..+...
T Consensus 158 ~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~ 235 (539)
T PLN02568 158 GGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEI 235 (539)
T ss_pred CCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeE
Confidence 1235888888875 222 33334455556666666655543333322222111 00 0 000 0 113467
Q ss_pred EecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHH-------hhcCCCC
Q 002928 209 TVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALR-------MLGNQAT 281 (864)
Q Consensus 209 ~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~-------ll~~~~~ 281 (864)
.++||++.+++.|++.+. +.+|++|++|++|++.+++|.|++.+|++++||+||+|+|+..+.+ .+.+.+|
T Consensus 236 ~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP 313 (539)
T PLN02568 236 TIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLP 313 (539)
T ss_pred EECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCC
Confidence 899999999999999985 4579999999999999999999999998899999999999999875 3555677
Q ss_pred hHHHHhhccCceee-ceEEEecCCCCCCC
Q 002928 282 FEEKRVLGAFQYVY-SDIFLHRDKNFMPR 309 (864)
Q Consensus 282 ~~~~~~l~~~~~~~-~~~~l~~d~~~~p~ 309 (864)
....+++..+++.. .++.+.++.++|+.
T Consensus 314 ~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 314 DFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred HHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 77788899999876 68889999988764
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.94 E-value=1.2e-24 Score=252.64 Aligned_cols=388 Identities=16% Similarity=0.165 Sum_probs=224.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCe----eeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGV----DLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~----~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
++|+|||||++||+||+.|+++|++|+|+|+++++||++.+....|. .+|.|+++++......+..+.+++|++..
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 47999999999999999999999999999999999999999988653 68999999976555556789999998765
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc-
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR- 155 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (864)
.......++..+|..+....... . ...+...+....++.. .. . ......+.|++++++..
T Consensus 319 ~~~~~~~~~~~dG~~~~~~~~~~----v-------~~~f~~lL~~~~klr~----~~---~-~~~~~~D~SLg~~le~~~ 379 (808)
T PLN02328 319 KVRDICPLYLPDGKAVDAEIDSK----I-------EASFNKLLDRVCKLRQ----AM---I-EEVKSVDVNLGTALEAFR 379 (808)
T ss_pred ecCCCceEEeCCCcCcchhhhhh----H-------HHHHHHHHHHHHHHHH----hh---h-hcccccCcCHHHHHHHHh
Confidence 54433333334443321110000 0 0001111111111100 00 0 00111357888888642
Q ss_pred -----CCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCc
Q 002928 156 -----GYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGC 230 (864)
Q Consensus 156 -----~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~ 230 (864)
...+. ...++.+.+..........+...++. .+..... ....+.++.++||+..++++|++.+
T Consensus 380 ~~~~~~~~~~-e~~Ll~w~lanlE~~~gs~ls~LSl~----~w~qd~~--~e~~G~~~~v~GG~~~Li~aLa~~L----- 447 (808)
T PLN02328 380 HVYKVAEDPQ-ERMLLNWHLANLEYANASLMSNLSMA----YWDQDDP--YEMGGDHCFIPGGNDTFVRELAKDL----- 447 (808)
T ss_pred hhhccCCCHH-HHHHHHHHHHHHhccchhhHHHHHhh----hhhcccc--ccCCCeEEEECCcHHHHHHHHHhhC-----
Confidence 11111 11122222211111111112111111 1111100 0112457788999999999999977
Q ss_pred eEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHH---hhcCCCChHHHHhhccCceee-ceEEEecCCCC
Q 002928 231 QIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALR---MLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNF 306 (864)
Q Consensus 231 ~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~ 306 (864)
.|++|++|++|.+.+++|.| +.+|++++||+||+|+|..++.+ .+.+.++....+++..+.|.. .++.+.++.++
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F 526 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF 526 (808)
T ss_pred CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 49999999999999888887 45677899999999999999874 133456778888999999987 78899999988
Q ss_pred CCCCcCCccc--------------ceeccCCCCceEEEEeccccc----cCc-----cCCCCeEEEcCCC------CCCc
Q 002928 307 MPRNPAAWSA--------------WNFLGSTGGKVCLTYWLNVVQ----NIE-----ETRLPFLVTLNPD------HTPE 357 (864)
Q Consensus 307 ~p~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~----~l~-----~~~~~~~~~l~p~------~~~~ 357 (864)
|+.....+.. ++|...+.+..++.+..+... .+. +.+...+.++++. .+..
T Consensus 527 W~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~ 606 (808)
T PLN02328 527 WGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQ 606 (808)
T ss_pred ccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcce
Confidence 8754221110 111111222333333222111 110 1111122223221 1222
Q ss_pred ceeeeEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcccc
Q 002928 358 HTLFKWST------SHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 358 ~~~~~w~~------~~p~~~~~~~~-~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
..+++|.. ++..+.++... ....+.+-.+.++|||||+++ ++|++++|+.||.++|+.|+...
T Consensus 607 ~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~ 679 (808)
T PLN02328 607 AVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVA 679 (808)
T ss_pred EEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHH
Confidence 36678882 22223333221 222232211246899999964 45666999999999999998643
No 22
>PLN02676 polyamine oxidase
Probab=99.94 E-value=7.7e-25 Score=248.18 Aligned_cols=388 Identities=16% Similarity=0.185 Sum_probs=225.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCC-eEEEEecCCCCCCcceeEeeCCeeeccceeeccC---CCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR---VTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~-~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~---~~~~~~~~l~~~lG~~~~ 76 (864)
.||+|||||++||+||++|+++|. +|+|||+++++||++.+....|+.+|.|+++++. .....+.++.+++|+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~ 106 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF 106 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence 489999999999999999999998 6999999999999999999999999999999964 234557789999998765
Q ss_pred cccce---eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccH--HHH
Q 002928 77 ISDMS---FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETL--GQF 151 (864)
Q Consensus 77 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 151 (864)
..... ..+...+|+.+ .. .. ...+......+.++..... ... . +...++.++ ..+
T Consensus 107 ~~~~~~~~~~~~~~~g~~~--------~~---~~----~~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~s~~~~~~ 166 (487)
T PLN02676 107 YSDFDNLSSNIYKQDGGLY--------PK---KV----VQKSMKVADASDEFGENLS---ISL-S-AKKAVDISILTAQR 166 (487)
T ss_pred ecCccccceeEECCCCCCC--------CH---HH----HHHHHHHHHHHHHHHHHHH---Hhh-c-ccCCCCccHHHHHH
Confidence 43221 11111122211 00 00 0011111111111111110 000 0 111234444 333
Q ss_pred HHhcC-CCH-HHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEe-cCChHHHHHHHHHHHhhc
Q 002928 152 VETRG-YSE-LFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTV-RSRSRSYVDKVIELLESL 228 (864)
Q Consensus 152 l~~~~-~~~-~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gG~~~l~~~La~~~~~~ 228 (864)
+.... ... .....++. ....++.+++++ ++..+.. ... ....+...+... +||++.+++.|++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---S~~~~~~---~~~-~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~ 237 (487)
T PLN02676 167 LFGQVPKTPLEMVIDYYN--YDYEFAEPPRVT---SLKNTEP---NPT-FVDFGEDEYFVADPRGYESLVYYLAEQFLST 237 (487)
T ss_pred HHhhCCCCHHHHHHHHHh--ccceeccCcccc---chhhcCc---ccc-cccCCCceEEeecCCCHHHHHHHHHhhcccc
Confidence 43321 111 11111111 112245555444 3322111 000 011122223222 689999999999988543
Q ss_pred ------CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHH---hhcCCCChHHHHhhccCceee-ceE
Q 002928 229 ------GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALR---MLGNQATFEEKRVLGAFQYVY-SDI 298 (864)
Q Consensus 229 ------G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~~ 298 (864)
+.+|++|++|++|++.+++|+|+|.+|++++||+||+|+|..++.+ .+.+++|....+.+..+++.. .++
T Consensus 238 ~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv 317 (487)
T PLN02676 238 KSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKI 317 (487)
T ss_pred cccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEE
Confidence 3579999999999999999999999998899999999999998864 233456677778888888876 689
Q ss_pred EEecCCCCCCCCcCC------------cccceecc--CCCCceEEEEeccccc----cCc-----cCCCCeEEEcCCCCC
Q 002928 299 FLHRDKNFMPRNPAA------------WSAWNFLG--STGGKVCLTYWLNVVQ----NIE-----ETRLPFLVTLNPDHT 355 (864)
Q Consensus 299 ~l~~d~~~~p~~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~~----~l~-----~~~~~~~~~l~p~~~ 355 (864)
.+.++.++|+.+... +..|.... .+....++.+..+... .+. +.+...+.++++...
T Consensus 318 ~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~ 397 (487)
T PLN02676 318 FLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNI 397 (487)
T ss_pred EEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCC
Confidence 999999999863210 01111111 1222334333322110 111 111122333443222
Q ss_pred C---cceeeeEEc------CCCCCCHHHHHHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 356 P---EHTLFKWST------SHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 356 ~---~~~~~~w~~------~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
+ ....+.|.. .+..+.++......... .+|.++|||||+.+ .+|++++|+.||.++|+.|+.
T Consensus 398 ~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L-~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~ 471 (487)
T PLN02676 398 PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQI-RAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE 471 (487)
T ss_pred CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHH-hCCCCceEEeccccccccccchHHHHHHHHHHHHHHHH
Confidence 1 224456762 23334444333222111 24668999999953 467779999999999999975
No 23
>PLN03000 amine oxidase
Probab=99.94 E-value=1.2e-24 Score=251.77 Aligned_cols=383 Identities=14% Similarity=0.117 Sum_probs=222.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC----CeeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID----GVDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~----G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
++|+|||||++||+||+.|++.|++|+|+|+++++||++.|.+.. |..+|+|+++++......+..+.+++|++..
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 479999999999999999999999999999999999999999875 4789999999986555456678899998765
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHh--
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVET-- 154 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-- 154 (864)
.......++..+|+..... .. ..........++.......... ....+.+++++++.
T Consensus 265 ~~~~~~~ly~~~Gk~v~~~--------~~-------~~ve~~fn~lLd~~~~lr~l~~------~~~~D~SLg~aLe~~~ 323 (881)
T PLN03000 265 KVRDKCPLYRVDGKPVDPD--------VD-------LKVEVAFNQLLDKASKLRQLMG------DVSMDVSLGAALETFR 323 (881)
T ss_pred ecCCCCeEEEeCCcCCchh--------hh-------hhHHHHHHHHHHHHHHHHHHhc------ccCcCCcHHHHHHHHH
Confidence 4332222222333332100 00 0000001111110000001110 11234555554331
Q ss_pred ----cCCCHHHHHHHHhhhhhcc---cCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhh
Q 002928 155 ----RGYSELFQKAYLVPVCGSI---WSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLES 227 (864)
Q Consensus 155 ----~~~~~~~~~~~~~p~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~ 227 (864)
....+.. ..++.+....+ .+.....+ ++ .++...... ...+..+.++||++.++++|++.+
T Consensus 324 ~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~L---Sl----~~wdqd~~~--e~~G~~~~v~GG~~~LieaLa~~L-- 391 (881)
T PLN03000 324 QVSGNDVATEE-MGLFNWHLANLEYANAGLVSKL---SL----AFWDQDDPY--DMGGDHCFLPGGNGRLVQALAENV-- 391 (881)
T ss_pred HHHcccCCHHH-HHHHHHHHHHHhcccccCHHHH---HH----HHhhhcccc--cCCCceEEeCCCHHHHHHHHHhhC--
Confidence 0111111 11111111111 11121111 11 112111000 123446678999999999999987
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHH---hhcCCCChHHHHhhccCceee-ceEEEecC
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALR---MLGNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
.|++|++|++|++.+++|.|++.++ +++||+||+|+|+.++.+ .+.+.+|....+++..+.|.. .++++.++
T Consensus 392 ---~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd 467 (881)
T PLN03000 392 ---PILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFP 467 (881)
T ss_pred ---CcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeC
Confidence 4999999999999999999987654 899999999999999873 233457788889999999987 78999999
Q ss_pred CCCCCCCcCCccc-----------ceecc-CC-CCceEEEEeccccc-----c-----CccCCCCeEEEcCCC------C
Q 002928 304 KNFMPRNPAAWSA-----------WNFLG-ST-GGKVCLTYWLNVVQ-----N-----IEETRLPFLVTLNPD------H 354 (864)
Q Consensus 304 ~~~~p~~~~~~~~-----------~~~~~-~~-~~~~~~~~~~~~~~-----~-----l~~~~~~~~~~l~p~------~ 354 (864)
..+|+.+...+.. +.+.. .+ .+..++..++.... . +.+.+...+.++++. .
T Consensus 468 ~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~ 547 (881)
T PLN03000 468 YVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPD 547 (881)
T ss_pred CccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCC
Confidence 9999765321111 11111 12 23333333332211 1 111112223333321 1
Q ss_pred CCcceeeeEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcccc
Q 002928 355 TPEHTLFKWST------SHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 355 ~~~~~~~~w~~------~~p~~~~~~~~-~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
+....+++|.. ++..+.++... ....+.+--+.++|||||+.+ .+|++++|+.||.++|+.|+...
T Consensus 548 Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 548 PLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred ceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 12225667872 33334444322 222232211245899999953 55666999999999999997533
No 24
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=8.1e-25 Score=225.78 Aligned_cols=402 Identities=17% Similarity=0.242 Sum_probs=261.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCe--EEEEecCCCCCCcceeEee-CCeeeccceeeccCCCch--HHHHHHHHcCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVE--VVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTYP--NMMEFFESLGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~--V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~--~~~~l~~~lG~~~ 75 (864)
|+|+|+|||+|||++||+|++++-+ |+|+|+.+|+|||++|.+. +|+.+|-|+.-+.+.... ...++++++|++.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence 6899999999999999999999865 5669999999999999444 789999999988764443 4668999999987
Q ss_pred ccccceeeEEecCCCceeecCC-----CCCCc-hhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHH
Q 002928 76 EISDMSFSVSLDKGQGCEWSSR-----NGMSG-LFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLG 149 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (864)
+....+........+...+... ..+.. .+.....+.++..+.++.+..+ ........++|++
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr------------~~~~~~~~dESV~ 159 (491)
T KOG1276|consen 92 ELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFR------------KKVSDPSADESVE 159 (491)
T ss_pred eeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhcc------------ccCCCCCccccHH
Confidence 6655543332222222222211 11111 1222233334443333322221 1113334789999
Q ss_pred HHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhh-cCC---------------Cc---------cCCC
Q 002928 150 QFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRN-HHA---------------LQ---------IFGR 204 (864)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~---------------~~---------~~~~ 204 (864)
+|.+++ +++++.+..+.|++.++|+.++++++.-+....+..... ++. .. ....
T Consensus 160 sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~ 238 (491)
T KOG1276|consen 160 SFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEK 238 (491)
T ss_pred HHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccc
Confidence 999999 779999999999999999999999964444332222221 110 00 0112
Q ss_pred CcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeEEEEE--CCCc-EEecCEEEEccChHHHHHhhcCCC
Q 002928 205 PQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGRIEIR--GDDF-QRVYDGCIMAVHAPDALRMLGNQA 280 (864)
Q Consensus 205 ~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~~V~~--~~G~-~~~ad~VV~A~~~~~~~~ll~~~~ 280 (864)
...+..+||++.+.+++.+.+.+..+.|.++-+++.+.... ++|.+++ .++. .+..++++.|.|++...++++. .
T Consensus 239 ~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~-~ 317 (491)
T KOG1276|consen 239 WTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRG-L 317 (491)
T ss_pred cchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccc-c
Confidence 33457889999999999999998889999999999887653 5575554 4453 3556677779999999998885 4
Q ss_pred ChHHHHhhccCceeeceEEE-ecCC--C---------CCCCC--------cCCcccceecc-CCCCceEEEEecccccc-
Q 002928 281 TFEEKRVLGAFQYVYSDIFL-HRDK--N---------FMPRN--------PAAWSAWNFLG-STGGKVCLTYWLNVVQN- 338 (864)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~l-~~d~--~---------~~p~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 338 (864)
.+.....+..++|.+..++. .+.. . ++|.. ...|++..|.. ++..++.+........+
T Consensus 318 ~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~ 397 (491)
T KOG1276|consen 318 QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNT 397 (491)
T ss_pred chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccC
Confidence 56778888899998865542 2322 1 34521 22555555543 33333333221111111
Q ss_pred --Cc-------cCCCCeEEE-cCCCCCCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-hcCCC--CeEEEec-cCCCCCCh
Q 002928 339 --IE-------ETRLPFLVT-LNPDHTPEH-TLFKWSTSHPVPSVAASKASLELDH-IQGKR--GIWFCGA-YQGYGFHE 403 (864)
Q Consensus 339 --l~-------~~~~~~~~~-l~p~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~--~l~~aG~-~~g~G~~e 403 (864)
+. ....+.+.+ +.....|.. .++.|....|+|++++-+.+..+.. ++..+ +++++|. |.|.++ .
T Consensus 398 ~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~v-g 476 (491)
T KOG1276|consen 398 SLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSV-G 476 (491)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCCh-h
Confidence 00 001111111 233323333 5568999999999999999888887 44444 8999999 689999 9
Q ss_pred hhHhHHHHHHHHhc
Q 002928 404 DGLKAGMIAAHGML 417 (864)
Q Consensus 404 ~a~~sG~~aA~~il 417 (864)
+|+.+|+.+|..+.
T Consensus 477 dcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 477 DCIESGRKTAVEVI 490 (491)
T ss_pred HHHHhhHHHHHhhc
Confidence 99999999887663
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.93 E-value=9.3e-24 Score=242.96 Aligned_cols=294 Identities=18% Similarity=0.221 Sum_probs=172.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCch-HHHHHHHHcCCCccc--
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYP-NMMEFFESLGVDMEI-- 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~-~~~~l~~~lG~~~~~-- 77 (864)
+||+|||||++||+||..|+++|++|+|||+++++||+++|++..|+.+|.|+|++.....+ ....+++++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 69999999999999999999999999999999999999999999999999999998542222 355788999987431
Q ss_pred -ccceeeEEecCCC-ceeecCCCCCCchhhhhhhcC--ChHHHHHHHHHHhHHHH------------HHHH---HHhhcc
Q 002928 78 -SDMSFSVSLDKGQ-GCEWSSRNGMSGLFAQKKNLL--NPYFWQMLREIIKFNDD------------VLSY---LEDLEN 138 (864)
Q Consensus 78 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~---~~~~~~ 138 (864)
.+....+.+.++. .+.+.. +............ ...++..+......... ...+ +.....
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~--d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWH--DPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP 159 (492)
T ss_pred cCCCCcEEEECCCceEeeeec--CHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence 1122233334442 222110 0000001111111 01111111111110000 0000 000000
Q ss_pred C---CcCCCCccHHHHHHhcC-CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCCh
Q 002928 139 N---ADIDRNETLGQFVETRG-YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRS 214 (864)
Q Consensus 139 ~---~~~~~~~s~~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 214 (864)
. .......++.+|++..+ +.......++........+.++++.+......++.+.. ...+.++++||+
T Consensus 160 ~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~~GG~ 231 (492)
T TIGR02733 160 DTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQ--------APHGLWHLHGSM 231 (492)
T ss_pred hhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccc--------cCCCceeecCcH
Confidence 0 00012477888888763 33332333333222112233343442211111111111 112345799999
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCC-----cEEecCEEEEccChHHHHHhhcC-CCChHHHHh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDD-----FQRVYDGCIMAVHAPDALRMLGN-QATFEEKRV 287 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G-----~~~~ad~VV~A~~~~~~~~ll~~-~~~~~~~~~ 287 (864)
+.++++|++.++++|++|+++++|++|..+++++ .|.+.+| ++++||+||+|+|+..+.+++++ ..++...+.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~ 311 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKR 311 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHH
Confidence 9999999999999999999999999999887753 3434343 57899999999999998888873 344455566
Q ss_pred hccCceeece--EEEecCC
Q 002928 288 LGAFQYVYSD--IFLHRDK 304 (864)
Q Consensus 288 l~~~~~~~~~--~~l~~d~ 304 (864)
+..+.++... +.+..+.
T Consensus 312 ~~~~~~s~~~~~v~l~~~~ 330 (492)
T TIGR02733 312 LKKLPEPSGAFVFYLGVKR 330 (492)
T ss_pred HhcCCCCCceEEEEEeecc
Confidence 7777766643 4454454
No 26
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=4.5e-24 Score=241.87 Aligned_cols=384 Identities=17% Similarity=0.224 Sum_probs=233.8
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCe--eeccceeeccCCCchHHHHHHHHcCCCcccccc--eeeEEecCC
Q 002928 14 VSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGV--DLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM--SFSVSLDKG 89 (864)
Q Consensus 14 saA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~--~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~--~~~~~~~~~ 89 (864)
+||++|+++|++|+||||++++||++.|.+.+|+ .+|.|+|+++ ..++++.++++++|++...... .......++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~-~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 79 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLL-GAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG 79 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEE-cccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence 5899999999999999999999999999999865 4999999995 4678899999999987654311 111111122
Q ss_pred CceeecCCCCCCchhhhhh-----hcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCHHHHHH
Q 002928 90 QGCEWSSRNGMSGLFAQKK-----NLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSELFQKA 164 (864)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 164 (864)
....+.. ..+..++.... ..+.+. +..++......... ......++.++.+|+++.++++.+.+.
T Consensus 80 ~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~ 149 (419)
T TIGR03467 80 RLSRLRL-SRLPAPLHLARGLLRAPGLSWA------DKLALARALLALRR---TRFRALDDTTVGDWLQAAGQSERLIER 149 (419)
T ss_pred CceeecC-CCCCCCHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHh---cCccccCCCCHHHHHHHcCCCHHHHHH
Confidence 2111111 11111111000 011111 11111111111111 011123678999999999888889999
Q ss_pred HHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHH-HHHHHHHhhcCceEEeCcceEEEEE
Q 002928 165 YLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYV-DKVIELLESLGCQIKTGCEVRSVLQ 243 (864)
Q Consensus 165 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~-~~La~~~~~~G~~I~~~~~V~~I~~ 243 (864)
++.|++.+.|+.++++++. ......+... .........+.+++||+..++ +.|++.+++.|++|++|++|++|+.
T Consensus 150 ~~~p~~~~~~~~~~~~~s~---~~~~~~~~~~-~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~ 225 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASA---ALAAKVLRDS-FLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA 225 (419)
T ss_pred HHHHHHHHHcCCCHHHHHH---HHHHHHHHHH-HhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE
Confidence 9999999999999999854 3333333211 111111235778899987766 5589999888999999999999999
Q ss_pred eCCeEEEEE-CCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEEEecCCCCC-CCCcC--Ccc--c
Q 002928 244 YGEGRIEIR-GDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFM-PRNPA--AWS--A 316 (864)
Q Consensus 244 ~~~~~~V~~-~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~-p~~~~--~~~--~ 316 (864)
++++++++. .+|++++||.||+|+|+.++.++++. +...+.+..++|.. .++.+.++.+++ +.+.. ... .
T Consensus 226 ~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 302 (419)
T TIGR03467 226 NAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQ 302 (419)
T ss_pred cCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCcee
Confidence 888865543 46778999999999999999998874 24556677788877 467788888774 33211 010 1
Q ss_pred ceecc--CCCCceEEEEeccccccCc--------cCCCCeEEEcCCCC---CCcc-eeeeEEcCCCCCCHHHHHHHHhhh
Q 002928 317 WNFLG--STGGKVCLTYWLNVVQNIE--------ETRLPFLVTLNPDH---TPEH-TLFKWSTSHPVPSVAASKASLELD 382 (864)
Q Consensus 317 ~~~~~--~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~l~p~~---~~~~-~~~~w~~~~p~~~~~~~~~~~~l~ 382 (864)
|.+.. .++....+..++.....+. +.+...+.+++|.. .+.+ .+.+|....+.+.++.....+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 381 (419)
T TIGR03467 303 WLFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGA- 381 (419)
T ss_pred EEEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCC-
Confidence 22221 1111223333333221111 11111223344432 1222 33455555555444432111111
Q ss_pred hhcCCCCeEEEeccCCCCC---ChhhHhHHHHHHHHhc
Q 002928 383 HIQGKRGIWFCGAYQGYGF---HEDGLKAGMIAAHGML 417 (864)
Q Consensus 383 ~~~~~~~l~~aG~~~g~G~---~e~a~~sG~~aA~~il 417 (864)
..+.+||+|||+|+..|+ +|+|+.||.++|+.|+
T Consensus 382 -~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 382 -RTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred -CCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 246789999999876653 3899999999999885
No 27
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.92 E-value=9.8e-24 Score=222.82 Aligned_cols=395 Identities=18% Similarity=0.135 Sum_probs=221.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
.||+|||||+|||++|+.|.++|++|+|||+++++|||+.+.+..|...|.|++++++ ....+..+.+++|++..+...
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~fi~ 86 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPFIR 86 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCceec
Confidence 4899999999999999999999999999999999999999999999999999999977 555677999999999877543
Q ss_pred eeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHH--HHH-hhccCCcCCCCccHHHHHHhcCC
Q 002928 81 SFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLS--YLE-DLENNADIDRNETLGQFVETRGY 157 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~s~~~~l~~~~~ 157 (864)
.-. ....+....... + ....+..........++...... .+. .........+.+++.+|. . .
T Consensus 87 ~g~------~~~~~~~~~~~~---p---~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W~-~--~ 151 (450)
T COG1231 87 DGD------NVIGYVGSSKST---P---KRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWK-T--S 151 (450)
T ss_pred cCc------cccccccccccc---c---hhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhhh-h--c
Confidence 110 000010000000 0 00000000000001111100000 000 000000001234555551 0 0
Q ss_pred CHHHHHHH-HhhhhhcccC-CChhhhhcCCHHHHHHHHhh-cCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEe
Q 002928 158 SELFQKAY-LVPVCGSIWS-CSSEKVMSCSAFSVLSFCRN-HHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKT 234 (864)
Q Consensus 158 ~~~~~~~~-~~p~~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~ 234 (864)
. ...+ ..+.....++ ....+.....-......... ............+.+.|||+.+++++++.+ |..|.+
T Consensus 152 ~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql---~~~I~~ 225 (450)
T COG1231 152 S---LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL---GTRILL 225 (450)
T ss_pred c---ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh---hceEEe
Confidence 0 0001 1111111111 11111111111111111110 011111223444455699999999999999 889999
Q ss_pred CcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhh-cCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcC
Q 002928 235 GCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRML-GNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPA 312 (864)
Q Consensus 235 ~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~ 312 (864)
+.+|++|.+.+++|+|++.+.+++++|.||+|+|..++.++. .+..++..++.+..++|.. .+..+.+++++|.....
T Consensus 226 ~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~ 305 (450)
T COG1231 226 NEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGI 305 (450)
T ss_pred cCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhccc
Confidence 999999999999999999984589999999999999888754 3457788888888899988 67888899999876541
Q ss_pred -----Cccc----ceeccC--CCC-ceEEEEec-ccccc----Ccc-----CCCCeEEEcCCCCCCcc----eeeeEEc-
Q 002928 313 -----AWSA----WNFLGS--TGG-KVCLTYWL-NVVQN----IEE-----TRLPFLVTLNPDHTPEH----TLFKWST- 365 (864)
Q Consensus 313 -----~~~~----~~~~~~--~~~-~~~~~~~~-~~~~~----l~~-----~~~~~~~~l~p~~~~~~----~~~~w~~- 365 (864)
.++. ..|... .++ .+++.++. ..... +.+ .....+..++|...... ..+.|..
T Consensus 306 l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~d 385 (450)
T COG1231 306 LGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKD 385 (450)
T ss_pred CCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeecccC
Confidence 1111 111111 122 33444333 21111 111 11112334455322221 3345552
Q ss_pred -----CCCCCCHHHHHHHHhhhhhcCCCCeEEEe-cc--CCCCCChhhHhHHHHHHHHhcc
Q 002928 366 -----SHPVPSVAASKASLELDHIQGKRGIWFCG-AY--QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 366 -----~~p~~~~~~~~~~~~l~~~~~~~~l~~aG-~~--~g~G~~e~a~~sG~~aA~~ilg 418 (864)
..+.+.++......... ..+.+.|+||| .+ .-.|+.++|+.||+++|.+|..
T Consensus 386 pwt~G~~aa~~~g~~~~~~~~l-~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 386 PWTLGGTAAYPPGQRTKLYPTL-PAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred CcCCccccccCCcccccccccc-cCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 12222222211111111 25678999999 54 3556669999999999999864
No 28
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.92 E-value=4e-23 Score=238.54 Aligned_cols=277 Identities=19% Similarity=0.160 Sum_probs=168.1
Q ss_pred EEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcc------
Q 002928 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDME------ 76 (864)
Q Consensus 3 V~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~------ 76 (864)
|||||||++||+||.+|+++|++|+||||++++||+++|++.+|+.+|.|++++.. ...+.++++++|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCChhheEEEE
Confidence 79999999999999999999999999999999999999999999999999999852 2345588888886431
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhcCC---hHHHHHHHHHHhHHHHHH-HHH-----------Hh-hccCC
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLN---PYFWQMLREIIKFNDDVL-SYL-----------ED-LENNA 140 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-----------~~-~~~~~ 140 (864)
..+..+.+.+.+++.+.+.. ........+..... ..+.+......++..... ..+ .. .....
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQLDVDN--DQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred ECCCceEEECCCCCEEEecC--CHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 11222233333444444321 11101111111110 111111111111111000 000 00 00001
Q ss_pred cCCCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHH
Q 002928 141 DIDRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDK 220 (864)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 220 (864)
......++.+|+++....+.+.. ++. .....++.++++... ...++.+... ....+++.||+..++++
T Consensus 157 ~~~~~~s~~~~~~~~~~~~~l~~-~l~-~~~~~~g~~p~~~~~--~~~l~~~~~~--------~~g~~~~~gG~~~l~~a 224 (502)
T TIGR02734 157 ALLAWRSLYSKVARFFSDERLRQ-AFS-FHALFLGGNPFRTPS--IYALISALER--------EWGVWFPRGGTGALVAA 224 (502)
T ss_pred hccCcCCHHHHHHhhcCCHHHHH-Hhc-ccceeeccCcccchH--HHHHHHHHHh--------hceEEEcCCCHHHHHHH
Confidence 11235778888887744444333 222 223355566654421 1112221111 23456899999999999
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHH-HhhcCCCCh-HHHHhhccCceee
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDAL-RMLGNQATF-EEKRVLGAFQYVY 295 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~-~ll~~~~~~-~~~~~l~~~~~~~ 295 (864)
|++.++++|++|+++++|++|..++++ +.|++.+|++++||+||+|++...+. .|++....+ ...+.+....++.
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 302 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSP 302 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCC
Confidence 999999999999999999999988776 57888888889999999999986655 455543222 2233444444444
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.92 E-value=9e-24 Score=222.27 Aligned_cols=276 Identities=15% Similarity=0.198 Sum_probs=177.5
Q ss_pred cEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcC-CCcccc-
Q 002928 2 RAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLG-VDMEIS- 78 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG-~~~~~~- 78 (864)
+|||||||+|||+||.+|-+.| .+|+|||+.+|+|||+.|....+..+++|++|+|+.....+.++.+++| +.....
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~t 102 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVT 102 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccC
Confidence 6999999999999999999775 6999999999999999999998889999999998766777889999888 211110
Q ss_pred ---cceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc
Q 002928 79 ---DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR 155 (864)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (864)
..........|..+ ...+ ...+.++... .....+......+..|+++++...
T Consensus 103 g~~~~~~~~~~~~g~~V-------------------~~~~---~~~~~~~~~~---~~~~~r~~~~~~~~~SvG~~ln~~ 157 (498)
T KOG0685|consen 103 GPAYVDNFHTRSNGEVV-------------------PEEL---LDELNEITVT---LSDKLREAEIAHDEGSVGEYLNSE 157 (498)
T ss_pred CccccceeEEEecCccC-------------------cHHH---HHHHHHHHHh---hhhhcccccccCccccHHHHHHHH
Confidence 00111111111111 1111 1111111110 111111111113556777776641
Q ss_pred -------C-C---CHHHHHHHHhhh---hhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHH
Q 002928 156 -------G-Y---SELFQKAYLVPV---CGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKV 221 (864)
Q Consensus 156 -------~-~---~~~~~~~~~~p~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L 221 (864)
. . ...+....+.-+ ...+.+++ .++.++...+..+....+ .......+-|+..+.+-|
T Consensus 158 ~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d--~l~evs~~~~~ey~~~~g------e~~~~~~~kGy~~iL~~l 229 (498)
T KOG0685|consen 158 FWDELRGPENPEIDKTLAEEILNVYFKVECSITGAD--NLSEVSLRALLEYTECPG------EELLIWNKKGYKRILKLL 229 (498)
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHheeeeccC--chhhhhhhhccceeecCc------hhhheechhHHHHHHHHH
Confidence 0 0 111122222222 12222222 222223333333322211 012334566788999999
Q ss_pred HHHHhhc----C--ceEEeCcceEEEEEeC-CeEEEEECCCcEEecCEEEEccChHHHHH----hhcCCCChHHHHhhcc
Q 002928 222 IELLESL----G--CQIKTGCEVRSVLQYG-EGRIEIRGDDFQRVYDGCIMAVHAPDALR----MLGNQATFEEKRVLGA 290 (864)
Q Consensus 222 a~~~~~~----G--~~I~~~~~V~~I~~~~-~~~~V~~~~G~~~~ad~VV~A~~~~~~~~----ll~~~~~~~~~~~l~~ 290 (864)
++.+++. | .+++++++|.+|...+ +.+.|++.||+.+.||+||+|++..++++ ++.+++|....+++..
T Consensus 230 ~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~ 309 (498)
T KOG0685|consen 230 MAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIER 309 (498)
T ss_pred hccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHh
Confidence 9877642 1 3556669999999875 56999999999999999999999999876 7777889999999999
Q ss_pred Cceee-ceEEEecCCCCCCCC
Q 002928 291 FQYVY-SDIFLHRDKNFMPRN 310 (864)
Q Consensus 291 ~~~~~-~~~~l~~d~~~~p~~ 310 (864)
+.+.. .++.|.+..++||.+
T Consensus 310 lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 310 LGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred ccCCccceEEEEccCCCCCCC
Confidence 99998 699999999999986
No 30
>PLN02976 amine oxidase
Probab=99.91 E-value=6e-23 Score=242.47 Aligned_cols=382 Identities=15% Similarity=0.152 Sum_probs=216.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee-CCeeeccceeeccCCCc-------hHHH-HHHHHc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTY-------PNMM-EFFESL 71 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~-------~~~~-~l~~~l 71 (864)
++|+|||||++||++|++|+++|++|+|||+++++||++.+.+. .|+.+|.|+++++.... ++.. .+++++
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql 773 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL 773 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence 57999999999999999999999999999999999999999875 58899999999865321 2333 468889
Q ss_pred CCCcccccceeeE-EecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHH
Q 002928 72 GVDMEISDMSFSV-SLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQ 150 (864)
Q Consensus 72 G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 150 (864)
|+........... ....|..+ +... .... .....++......... .......+.++++
T Consensus 774 Gl~l~~~~~~~~~yd~~~G~~V--------~~e~-------~~~v---~~~fn~lld~~~~~~~---~~g~~a~d~SLgd 832 (1713)
T PLN02976 774 GLELTVLNSDCPLYDVVTGEKV--------PADL-------DEAL---EAEYNSLLDDMVLLVA---QKGEHAMKMSLED 832 (1713)
T ss_pred CCccccccCCCceeEccCCcCC--------CHHH-------HHHH---HHHHHHHHHHHHHHHh---hcccCccCCCHHH
Confidence 9887554322111 11122211 1000 0000 1111111111100000 0000112445555
Q ss_pred HHHhcCC------------------------------------CHHHHHHHHhh--------hhhcc---cCCChhhhhc
Q 002928 151 FVETRGY------------------------------------SELFQKAYLVP--------VCGSI---WSCSSEKVMS 183 (864)
Q Consensus 151 ~l~~~~~------------------------------------~~~~~~~~~~p--------~~~~~---~~~~~~~l~~ 183 (864)
+++.... .......++.+ ..... ++.+++++
T Consensus 833 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV-- 910 (1713)
T PLN02976 833 GLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV-- 910 (1713)
T ss_pred HHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh--
Confidence 5552100 00000000000 00000 12222222
Q ss_pred CCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEe----------CCeEEEEEC
Q 002928 184 CSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQY----------GEGRIEIRG 253 (864)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~----------~~~~~V~~~ 253 (864)
++. ++.....+..+ .+..+.++||+..|++.|++.+ .|++|++|++|.+. +++|.|+|.
T Consensus 911 -Sl~----~~~qd~~y~~f-gG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTs 979 (1713)
T PLN02976 911 -SLP----YWNQDDVYGGF-GGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTS 979 (1713)
T ss_pred -hhh----hhhcccccccC-CCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEEC
Confidence 221 11111111112 2345678999999999999976 59999999999984 357999999
Q ss_pred CCcEEecCEEEEccChHHHHH---hhcCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcCC----c----------c
Q 002928 254 DDFQRVYDGCIMAVHAPDALR---MLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPAA----W----------S 315 (864)
Q Consensus 254 ~G~~~~ad~VV~A~~~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~~----~----------~ 315 (864)
+|++++||+||+|+|+.++.. .+.+++|.....++..+.+.. .+++|.++.++|+.+... + .
T Consensus 980 DGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~ 1059 (1713)
T PLN02976 980 NGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFM 1059 (1713)
T ss_pred CCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEE
Confidence 998999999999999998763 344557777788889999987 789999999999864221 1 1
Q ss_pred cceeccCCCC-ceEEEEecccccc----Cc-----cCCCCeEEEcCCCC----CCcceeeeEEc------CCCCCCHHHH
Q 002928 316 AWNFLGSTGG-KVCLTYWLNVVQN----IE-----ETRLPFLVTLNPDH----TPEHTLFKWST------SHPVPSVAAS 375 (864)
Q Consensus 316 ~~~~~~~~~~-~~~~~~~~~~~~~----l~-----~~~~~~~~~l~p~~----~~~~~~~~w~~------~~p~~~~~~~ 375 (864)
.|+.. .+.+ .+++.+..+.... +. +.+...+.++++.. +....+++|.. ++....++..
T Consensus 1060 ~wnlr-~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~ 1138 (1713)
T PLN02976 1060 FWNVK-KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGAS 1138 (1713)
T ss_pred eccCC-CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCC
Confidence 12221 1222 3455544432211 11 11112233344421 22225667862 2222333322
Q ss_pred H-HHHhhhhhcCCC-CeEEEeccC---CCCCChhhHhHHHHHHHHhccc
Q 002928 376 K-ASLELDHIQGKR-GIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 376 ~-~~~~l~~~~~~~-~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
. ....+. +|.. .|||||+.+ ++|+++||+.||.++|++|+..
T Consensus 1139 ~~d~d~LA--ePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1139 GEDYDILG--RPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred chHHHHHh--CCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 2 112222 3444 499999953 5666799999999999999743
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.91 E-value=1.7e-22 Score=210.54 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=185.3
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
..+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++... .+++++.++|+.+.+ +++
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCC
Confidence 3568889999999999999999999999999887788999999999999999988653 348999999998877 678
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHh
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF-PGGCLPSLNRITSAMT 774 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~l~ 774 (864)
+||+|++..+++|++.+++..++++++++|||||++++.++...... . .......++- ....+++..++.+.++
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--N---WDEEFKAYIKKRKYTLIPIQEYGDLIK 191 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--C---cHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999999999999766899999999999999999999887654321 0 0111111111 1234678899988888
Q ss_pred cCCCcEEEEEEeccccHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcC
Q 002928 775 SSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRP 848 (864)
Q Consensus 775 ~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~ 848 (864)
+ +||+++..++++.++...+..-.+.++++++++.+. |+++....+..-+..+-.+-+.|.+....+.++||
T Consensus 192 ~-aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263)
T PTZ00098 192 S-CNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263)
T ss_pred H-CCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccccceEeecCC
Confidence 6 999999999999999888888889999999999887 88888888888888888888999988888888884
No 32
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=3.8e-23 Score=230.96 Aligned_cols=383 Identities=15% Similarity=0.182 Sum_probs=213.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCee-eccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVD-LDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~-~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
++|||||||+||||||.+|.+.|++|+||||++|+|||+.|.+..+.. +|.|++++++.....+.-+.+++|++.....
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~ 95 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR 95 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence 589999999999999999999999999999999999999999997666 9999999987666577788999999987754
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHH---------
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQ--------- 150 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------- 150 (864)
....+....+.............. ... .+.....+.... ...... + ...++.+
T Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~~--------~~~---l~~~~~~~~~~~----~~~~~~--i-~~~~~~~~~~~~~~~~ 157 (501)
T KOG0029|consen 96 DTCPLFNENGGESDKVFDDFVEQE--------FNR---LLDDASNLEQRL----DNEIIG--I-SDDSFGEALEAFLSAS 157 (501)
T ss_pred ccccccccCCcccccccccchhhh--------hHH---HHHHHhhhhhhh----hhcccc--c-ccccHHHHHHhHHHHH
Confidence 443332222211110000000000 000 000000000000 000000 0 0011111
Q ss_pred -------HHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHH
Q 002928 151 -------FVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIE 223 (864)
Q Consensus 151 -------~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~ 223 (864)
+....+.........+ +.+........+..+ ..++......... .......+|+..++..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~--~~~~~~~~G~~~v~~~la~ 227 (501)
T KOG0029|consen 158 RLMKTLLELLLEGEADKVLQWHL-VNLELTFIAHLENAS-------ARLWDQDELFGGG--GIHLLMKGGYEPVVNSLAE 227 (501)
T ss_pred HHHHhhHHHhhhhhhhHHHHHHH-HHHHHHhhccHhHhh-------HHhhhhhhhcccc--cchhHhhCCccHHHhhcCC
Confidence 0010110000000000 011111111111110 0111111111111 1345678899999888887
Q ss_pred HHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHHH--h-hcCCCChHHHHhhccCceee-ceE
Q 002928 224 LLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDALR--M-LGNQATFEEKRVLGAFQYVY-SDI 298 (864)
Q Consensus 224 ~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~~ 298 (864)
|..|+++.+|.+|.+.+++ +.+++.++..+++|.||+|+|.+++.. + +.+.++....+.+..+.+.. .++
T Consensus 228 -----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv 302 (501)
T KOG0029|consen 228 -----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKV 302 (501)
T ss_pred -----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEE
Confidence 7799999999999998766 355555555699999999999999876 2 23557788899999999988 688
Q ss_pred EEecCCCCCCCCcCCccc-------------ceeccCCCCceEEEEecccccc----Cc-----cCCCCeEEEcCC----
Q 002928 299 FLHRDKNFMPRNPAAWSA-------------WNFLGSTGGKVCLTYWLNVVQN----IE-----ETRLPFLVTLNP---- 352 (864)
Q Consensus 299 ~l~~d~~~~p~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----l~-----~~~~~~~~~l~p---- 352 (864)
.+.++..+|+.+...+.. +++...+....++....+.... +. ......+.++++
T Consensus 303 ~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~ 382 (501)
T KOG0029|consen 303 ILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEV 382 (501)
T ss_pred EEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcC
Confidence 889999999754322211 2222222233344443332111 11 001112222333
Q ss_pred CCCCcceeeeEEc------CCCCCCHHHHHH-HHhhhhhcCCCC-eEEEecc---CCCCCChhhHhHHHHHHHHhcc
Q 002928 353 DHTPEHTLFKWST------SHPVPSVAASKA-SLELDHIQGKRG-IWFCGAY---QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 353 ~~~~~~~~~~w~~------~~p~~~~~~~~~-~~~l~~~~~~~~-l~~aG~~---~g~G~~e~a~~sG~~aA~~ilg 418 (864)
..+....+.+|.. .++.+.++.... ...+. .+..+ +||||.+ ...|.+++|..||.++|..|+.
T Consensus 383 ~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~--~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~ 457 (501)
T KOG0029|consen 383 PDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLA--EPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILD 457 (501)
T ss_pred CCccceeeeeecccccCCccccccCCCCChhHHHHHh--ccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHH
Confidence 1122236668883 222222222222 23333 34455 9999996 4666669999999999998864
No 33
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.90 E-value=7.5e-22 Score=226.68 Aligned_cols=294 Identities=16% Similarity=0.137 Sum_probs=169.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCC---chH-HHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVT---YPN-MMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~---~~~-~~~l~~~lG~~~~ 76 (864)
.||+|||||++||+||..|+++|++|+||||++.+||++++++.+|+.+|.|++.+.... .++ +.++++.+|...+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 489999999999999999999999999999999999999999999999999999874321 223 3456776765443
Q ss_pred cccce--eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHh---------------hccC
Q 002928 77 ISDMS--FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLED---------------LENN 139 (864)
Q Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 139 (864)
..... +.+.+.++..+.+.. +............ |...+.+.+..+........+.. ....
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~--d~~~~~~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHR--EYDDFIQELVAKF-PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKH 157 (493)
T ss_pred ccCCCccEEEECCCCeeEeeec--CHHHHHHHHHHHC-chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhc
Confidence 32222 223333443333221 1111111111111 22111122211111111000000 0000
Q ss_pred C------cCCCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCC-hhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecC
Q 002928 140 A------DIDRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCS-SEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRS 212 (864)
Q Consensus 140 ~------~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 212 (864)
+ ......++.+++++....+.+.. ++... ...++.. +.+. +.......+.. ......+++.|
T Consensus 158 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~-~l~~~-~~~~~~~p~~~~---p~~~~~~~~~~------~~~~g~~~~~g 226 (493)
T TIGR02730 158 PLACLGLAKYLPQNAGDIARRYIRDPGLLK-FIDIE-CFCWSVVPADQT---PMINAGMVFSD------RHYGGINYPKG 226 (493)
T ss_pred hhhhhHHHHHhhccHHHHHHHhcCCHHHHH-HHHHH-HHhccCCCcccc---hhhhHHHhhcc------cccceEecCCC
Confidence 0 00013566777777645544433 22211 1222222 2222 22211111111 11346678999
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHH-HhhcCC-CChHHHHhhc
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDAL-RMLGNQ-ATFEEKRVLG 289 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~-~ll~~~-~~~~~~~~l~ 289 (864)
|+..++++|++.++++|++|+++++|++|..++++ +.|.+.+|++++||+||+|+++..+. +|++.. .++...+.+.
T Consensus 227 G~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~ 306 (493)
T TIGR02730 227 GVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQR 306 (493)
T ss_pred hHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHh
Confidence 99999999999999999999999999999887665 47888888889999999998765554 577632 2233333334
Q ss_pred cCceee--ceEEEecCCCCCC
Q 002928 290 AFQYVY--SDIFLHRDKNFMP 308 (864)
Q Consensus 290 ~~~~~~--~~~~l~~d~~~~p 308 (864)
.+.++. .++.+..+....|
T Consensus 307 ~~~~s~s~~~~~l~l~~~~~p 327 (493)
T TIGR02730 307 NYVKSPSFLSLHLGVKADVLP 327 (493)
T ss_pred hccCCCceEEEEEEecCccCC
Confidence 444443 3445555554433
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=3.7e-23 Score=206.01 Aligned_cols=193 Identities=23% Similarity=0.349 Sum_probs=154.4
Q ss_pred chHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHH
Q 002928 569 TLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIV 648 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (864)
.+...+++|+..||+.|+..++.++ +..-+.+++.+.+++|.+|||||||||.++..++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~---------------------~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLH---------------------RLWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcch---------------------HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 5677789999999999988776544 2333477777787899999999999999999999
Q ss_pred Hh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccc
Q 002928 649 KQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLA 726 (864)
Q Consensus 649 ~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lk 726 (864)
+. ..++|+|+|+|++|++.|+++..+.+..+ ++++++|++++| ++.+||+|.+...|.++ .+++.+|+|++|+||
T Consensus 71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv--~d~~~aL~E~~RVlK 147 (238)
T COG2226 71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNV--TDIDKALKEMYRVLK 147 (238)
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcC--CCHHHHHHHHHHhhc
Confidence 98 45799999999999999999999988765 999999999999 99999999999999999 578999999999999
Q ss_pred cCcEEEEEEecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 727 EHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP-------------------GGCLPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 727 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
|||++++.++..+....... ....|..+++.| .-..|+.+++.+.+++ +||..+..+++
T Consensus 148 pgG~~~vle~~~p~~~~~~~-~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~-~gf~~i~~~~~ 225 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRK-AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEK-AGFEEVRYENL 225 (238)
T ss_pred CCeEEEEEEcCCCCchhhHH-HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHh-cCceEEeeEee
Confidence 99999999988776421110 011111222222 1236788888877776 89987775554
No 35
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.89 E-value=3.6e-23 Score=201.01 Aligned_cols=298 Identities=22% Similarity=0.325 Sum_probs=189.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccce
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDMS 81 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~~ 81 (864)
+|+||||||+||+||+.|+++|++|+||||+.-+|||.+|-+..|..+|.|+++|.+ ..+.+.++.+.+.-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~-~~~~F~~~Ve~~~~~------- 74 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP-RDELFLRAVEALRDD------- 74 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC-CchHHHHHHHHHHhC-------
Confidence 599999999999999999999999999999999999999999999999999999954 333344444432111
Q ss_pred eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCHHH
Q 002928 82 FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSELF 161 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 161 (864)
|-...|..
T Consensus 75 -------glV~~W~~----------------------------------------------------------------- 82 (331)
T COG3380 75 -------GLVDVWTP----------------------------------------------------------------- 82 (331)
T ss_pred -------Cceeeccc-----------------------------------------------------------------
Confidence 10001100
Q ss_pred HHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEE
Q 002928 162 QKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSV 241 (864)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I 241 (864)
.+|....+++ .......-|.-.-||..+++.|+..+ +|.++++|++|
T Consensus 83 ----------~~~~~~~~~~------------------~~~~d~~pyvg~pgmsalak~LAtdL-----~V~~~~rVt~v 129 (331)
T COG3380 83 ----------AVWTFTGDGS------------------PPRGDEDPYVGEPGMSALAKFLATDL-----TVVLETRVTEV 129 (331)
T ss_pred ----------cccccccCCC------------------CCCCCCCccccCcchHHHHHHHhccc-----hhhhhhhhhhh
Confidence 0000000000 00000111344567888999888866 89999999999
Q ss_pred EEeCCeEEEEECCCc-EEecCEEEEccChHHHHHhhcC---CCChHHHHhhccCceee-ceEEEecCCCCC-CC------
Q 002928 242 LQYGEGRIEIRGDDF-QRVYDGCIMAVHAPDALRMLGN---QATFEEKRVLGAFQYVY-SDIFLHRDKNFM-PR------ 309 (864)
Q Consensus 242 ~~~~~~~~V~~~~G~-~~~ad~VV~A~~~~~~~~ll~~---~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~-p~------ 309 (864)
.+.++.|++++++|. ..++|.||+|.|++.+..|+.. ..+...+..+..+.|.+ .+..+++..++. |-
T Consensus 130 ~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vd 209 (331)
T COG3380 130 ARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVD 209 (331)
T ss_pred eecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCCcccC
Confidence 999999999997664 6789999999999998888852 35566777888888877 455666653322 21
Q ss_pred -CcCCcccceec---cCCCCceEEEEecc----------ccccCccCCCCeEEEcCCCCCCcc---eeeeEEcCCCCCCH
Q 002928 310 -NPAAWSAWNFL---GSTGGKVCLTYWLN----------VVQNIEETRLPFLVTLNPDHTPEH---TLFKWSTSHPVPSV 372 (864)
Q Consensus 310 -~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~l~p~~~~~~---~~~~w~~~~p~~~~ 372 (864)
....|-..+.. +.|.+...+-.... ..+.+ ..++-.+..+.+...+.. ..++|.+++|....
T Consensus 210 g~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i-~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~ 288 (331)
T COG3380 210 GHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVI-VALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAV 288 (331)
T ss_pred CCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHH-HHHHHhhhhccCCCCCcchHHHhhccccccccccc
Confidence 12222221111 02223322211110 11111 122333445555333332 77899999986542
Q ss_pred HHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcc
Q 002928 373 AASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 373 ~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg 418 (864)
.. +.+.. ....+||+||||++.|-.|+|.+||..+|++|+.
T Consensus 289 ~~----~~L~a-d~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 289 AG----PPLDA-DRELPLYACGDWCAGGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred cC----Ccccc-CCCCceeeecccccCcchhHHHhccHHHHHHHHh
Confidence 21 11221 3456899999998778669999999999999974
No 36
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.88 E-value=1.5e-23 Score=239.16 Aligned_cols=395 Identities=23% Similarity=0.296 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC--CeeeccceeeccCCCchHHHHHHHHcCCCcccccce----ee
Q 002928 10 ISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--GVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDMS----FS 83 (864)
Q Consensus 10 iaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~--G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~~----~~ 83 (864)
+|||+||++|+++|++|+||||++++||++.|.+.+ |+.+|.|+++|+. .++++..++.++|+........ ..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG-MYPNLLNLIDELGLELSLETFPFPQIPF 79 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET-TSHHHHHHHHHHTHHTTEEEEEESSEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccc-cchhhHHHHHHhhhccccccccccccee
Confidence 699999999999999999999999999999999998 9999999999954 4566888999988753221111 11
Q ss_pred EEecCC-CceeecCCCCCCchhhhhhh-cC---ChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCC
Q 002928 84 VSLDKG-QGCEWSSRNGMSGLFAQKKN-LL---NPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYS 158 (864)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (864)
...... ....+.. ......... .. ...................................++.+++....+.
T Consensus 80 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (450)
T PF01593_consen 80 VYWPFGDGRPPWPP----SQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFS 155 (450)
T ss_dssp EEEEEEEEEEEEEE----CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccccc----ccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 110000 0000000 000000000 00 00000000110000000000000000000000122334444333233
Q ss_pred HHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcC---CCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeC
Q 002928 159 ELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHH---ALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTG 235 (864)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~ 235 (864)
+.+....+.+............. +.......+.... .........+....|++..+...+++.. |++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---g~~i~l~ 229 (450)
T PF01593_consen 156 EIFRESLFRPFFFGAFGFLPDES---SAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL---GGEIRLN 229 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---THHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH---GGGEESS
T ss_pred hhhHHHHHHhhhhhhhccccchh---hhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc---CceeecC
Confidence 33222112222211111111111 1111111111100 0012233455566677666666555555 7799999
Q ss_pred cceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHH-hhcCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcC-
Q 002928 236 CEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALR-MLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPA- 312 (864)
Q Consensus 236 ~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~-ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~- 312 (864)
++|++|+.+++++.|++.+|++++||+||+|+|.+.+.+ .+.+..+....+.+..+++.. .++.+.++.++++.+..
T Consensus 230 ~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~ 309 (450)
T PF01593_consen 230 TPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDF 309 (450)
T ss_dssp EEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTE
T ss_pred CcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccc
Confidence 999999999999999999999999999999999999985 333335555677778888887 67888899888877420
Q ss_pred ---------Cccc-ceecc-CC---CCceEEEEecccc----cc-----CccCCCCeEEEcCCC-CCC---cceeeeEEc
Q 002928 313 ---------AWSA-WNFLG-ST---GGKVCLTYWLNVV----QN-----IEETRLPFLVTLNPD-HTP---EHTLFKWST 365 (864)
Q Consensus 313 ---------~~~~-~~~~~-~~---~~~~~~~~~~~~~----~~-----l~~~~~~~~~~l~p~-~~~---~~~~~~w~~ 365 (864)
.+.. +.... .+ .+..+..+..... .. +.+.+.+.+.++.+. ..+ ...+.+|..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 310 FGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR 389 (450)
T ss_dssp SEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT
T ss_pred cceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccc
Confidence 1111 11111 11 2333333333221 11 111122233334442 111 124556765
Q ss_pred -CCCCC-----CHHHH-HHHHhhhhhcCC-CCeEEEeccCCCC---CChhhHhHHHHHHHHhc
Q 002928 366 -SHPVP-----SVAAS-KASLELDHIQGK-RGIWFCGAYQGYG---FHEDGLKAGMIAAHGML 417 (864)
Q Consensus 366 -~~p~~-----~~~~~-~~~~~l~~~~~~-~~l~~aG~~~g~G---~~e~a~~sG~~aA~~il 417 (864)
.++.. .++.. ...+.+ ..+. +||||||+|+..+ ..++|+.||++||+.|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 390 DPYPRGSYSYFPPGQSSQFRPAL--RTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTTSSSCECHCTTHHHHHHHHH--HSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc--cCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 33332 22222 111222 2344 7999999975433 44999999999999985
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.88 E-value=4.6e-23 Score=208.87 Aligned_cols=150 Identities=26% Similarity=0.380 Sum_probs=93.2
Q ss_pred CchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHH
Q 002928 568 NTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEI 647 (864)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (864)
+.++.-++.|+..||..|++.++..+.. ++ +.+++.+..++|.+|||+|||+|.++..+
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~-------------------wr--~~~~~~~~~~~g~~vLDv~~GtG~~~~~l 65 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQDRR-------------------WR--RKLIKLLGLRPGDRVLDVACGTGDVTREL 65 (233)
T ss_dssp ---------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHHHH-------------------HH--HHHHhccCCCCCCEEEEeCCChHHHHHHH
Confidence 3456778899999999999877655532 12 25666677889999999999999999999
Q ss_pred HHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhc
Q 002928 648 VKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESL 724 (864)
Q Consensus 648 a~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~ 724 (864)
++. +.++|+|+|+|++|++.|+++.+..+.. +|+++++|++++| ++++||+|++.+.++++ .++.+.++|++|+
T Consensus 66 ~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~--~d~~~~l~E~~RV 142 (233)
T PF01209_consen 66 ARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNF--PDRERALREMYRV 142 (233)
T ss_dssp GGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG---SSHHHHHHHHHHH
T ss_pred HHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhh--CCHHHHHHHHHHH
Confidence 987 4579999999999999999999988876 9999999999999 88999999999999999 5689999999999
Q ss_pred cccCcEEEEEEecCCCc
Q 002928 725 LAEHGLLLLQFISVPDQ 741 (864)
Q Consensus 725 LkpgG~l~i~~~~~~~~ 741 (864)
|||||++++.+++.+..
T Consensus 143 LkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 143 LKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEEEEEEEEEB-SS
T ss_pred cCCCeEEEEeeccCCCC
Confidence 99999999999988764
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.88 E-value=4.3e-21 Score=219.37 Aligned_cols=219 Identities=16% Similarity=0.147 Sum_probs=184.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++.. +...++++.++|+.+.+ ++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence 46777888788899999999999999999998778899999999999999998765 44458999999998887 6678
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhc
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF-PGGCLPSLNRITSAMTS 775 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~l~~ 775 (864)
||+|+|..+++|+ .++..++++++++|||||++++.++....... ...+..++. .+..+++..++.+.+++
T Consensus 333 fD~I~s~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~l~~ 404 (475)
T PLN02336 333 FDVIYSRDTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPEFAEYIKQRGYDLHDVQAYGQMLKD 404 (475)
T ss_pred EEEEEECCccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999 56899999999999999999998876543211 111222222 24567899999888886
Q ss_pred CCCcEEEEEEeccccHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcC
Q 002928 776 SSRLCVEDLENIGIHYYQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRP 848 (864)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~ 848 (864)
+||+++.+++++.+|..++..|.+.+.++++++... +++........-+......++.|.++..-++++|.
T Consensus 405 -aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475)
T PLN02336 405 -AGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475)
T ss_pred -CCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC
Confidence 999999999999999999999999999999998875 78877777777777888888889999999999884
No 39
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=3.8e-20 Score=210.52 Aligned_cols=259 Identities=23% Similarity=0.263 Sum_probs=151.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcC-CCcc---
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLG-VDME--- 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG-~~~~--- 76 (864)
+||||||||++||+||.+||++|++|+||||++++||+++|.+.+|+.+|.|++++...... .++++++ ++..
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~---~~~~~l~~l~~~~l~ 80 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG---PLFRELGNLDADGLD 80 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH---HHHHHhccCccccee
Confidence 59999999999999999999999999999999999999999999999999999887532222 4555555 3322
Q ss_pred --cccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcC------------
Q 002928 77 --ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADI------------ 142 (864)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 142 (864)
..+..+.+...+|..+..... +. ..........+...+....+........+........+..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d--~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (487)
T COG1233 81 LLPPDPAYRVFLPDGDAIDVYTD--LE-ATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPER 157 (487)
T ss_pred eeccCCceeeecCCCCEEEecCC--HH-HHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHH
Confidence 222223334344444333210 00 0000111111111111122222111111111110000000
Q ss_pred ------CCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHH
Q 002928 143 ------DRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRS 216 (864)
Q Consensus 143 ------~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 216 (864)
....+..+++... +........+.......+ .++.+.. .+..++..+. ...++.+++||++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~~--------~~~G~~~p~GG~~a 225 (487)
T COG1233 158 LLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHLG--------LSGGVFYPRGGMGA 225 (487)
T ss_pred HHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHhc--------ccCCeeeeeCCHHH
Confidence 0123444455444 333322222221111112 3333331 1122222221 24578899999999
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHHHhhc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~ 277 (864)
++++|++.++++|++|+++++|++|..++++ +++++.+|+.+++|.||++........+.+
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 9999999999999999999999999998875 788888887799999999987743333333
No 40
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.84 E-value=6.8e-20 Score=190.71 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=125.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcccCCCC-CC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKE--AGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~--~~l~~~v~~~~~d~~~~~-~~ 694 (864)
.+++.+.++++.+|||+|||+|.++..++++ +.++|+|+|+|++|++.|+++... ....++++++++|++++| ++
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 3455667788999999999999999999986 346999999999999999987542 222348999999999998 77
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhc-ccCC-------------
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEY-IFPG------------- 760 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-i~p~------------- 760 (864)
++||+|++..+++|+ .++..+++++.|+|||||++++.++..+...+... ...|..+. +.|-
T Consensus 144 ~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 144 CYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTS--MQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCEeEEEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHH--HHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 899999999999999 56899999999999999999999887655321110 00111110 0000
Q ss_pred ----CCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 761 ----GCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 761 ----~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
..+++.+++.+.+++ +||+.....+++
T Consensus 220 ~~s~~~f~s~~el~~ll~~-aGF~~~~~~~~~ 250 (261)
T PLN02233 220 KSSINEYLTGEELEKLALE-AGFSSAKHYEIS 250 (261)
T ss_pred HHHHHhcCCHHHHHHHHHH-CCCCEEEEEEcC
Confidence 236788999888886 999988776654
No 41
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=5.8e-20 Score=198.50 Aligned_cols=412 Identities=18% Similarity=0.145 Sum_probs=229.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee-CCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
|+|+|+|||+|||+||++|+++|++|+|+|+++++||.++|++. +|...|.|.|.| .+.|.++..++++++.+.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f-~~~Y~n~~~ll~~~~~~~~~~~ 79 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVF-FGCYYNLLTLLKELPIEDRLQL 79 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEe-chhHHHHHHHhhhCCchheeeh
Confidence 78999999999999999999999999999999999999999999 799999999999 5689999999999988754433
Q ss_pred ceeeEEe-c----CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHH-HHhhccCCcCCCCccHHHHHH
Q 002928 80 MSFSVSL-D----KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSY-LEDLENNADIDRNETLGQFVE 153 (864)
Q Consensus 80 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~ 153 (864)
......+ . .|..-.+..............-+..+. -..++..++.-..... ..... .....++.++.+|+.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~g~~~-~~~eld~~s~~d~l~ 156 (485)
T COG3349 80 REHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQ--LPRREKIRFVLRLGDAPIGADR-SLRELDKISFADWLK 156 (485)
T ss_pred HhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccc--cCHHHHhHHhhccccccchhHH-HHHHHhcccHHHHHH
Confidence 2221111 1 111100111000000000000000010 0011111111110000 00000 011126889999999
Q ss_pred hcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCC-hHHHHHHHHHHHhhcCceE
Q 002928 154 TRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSR-SRSYVDKVIELLESLGCQI 232 (864)
Q Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~La~~~~~~G~~I 232 (864)
..+..+......+.|+.-.....+++..+..........+.-.. .........+|+ ...+...+.+.+++.|.++
T Consensus 157 ~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v 232 (485)
T COG3349 157 EKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQPWTEYIPERGRKV 232 (485)
T ss_pred HhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeehhhhhccccCcee
Confidence 99888888888888888888888888886644444333222111 011112223333 3467788899999999999
Q ss_pred EeCcceEEEEEeC---C--eEEEEECCC--cEEecCEEEEccChHHHHHhhcCCCC-hHHHHhhccCceee-ceEEEecC
Q 002928 233 KTGCEVRSVLQYG---E--GRIEIRGDD--FQRVYDGCIMAVHAPDALRMLGNQAT-FEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 233 ~~~~~V~~I~~~~---~--~~~V~~~~G--~~~~ad~VV~A~~~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
+...+|+.|.... . .+.+...+. +.+.++.|+.++........++...+ +...+.+..+...+ .++.+.++
T Consensus 233 ~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~ 312 (485)
T COG3349 233 HADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFD 312 (485)
T ss_pred eccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeec
Confidence 9999999998765 2 244444322 13456667777766666666664433 33444444555555 57777777
Q ss_pred CCCCCCC---cCCc-ccceeccCCCCceE--------EEEecc-----------ccccCcc-------CCCCeEEEcCCC
Q 002928 304 KNFMPRN---PAAW-SAWNFLGSTGGKVC--------LTYWLN-----------VVQNIEE-------TRLPFLVTLNPD 353 (864)
Q Consensus 304 ~~~~p~~---~~~~-~~~~~~~~~~~~~~--------~~~~~~-----------~~~~l~~-------~~~~~~~~l~p~ 353 (864)
....+.. ...| ++..+..++..... ..+-.. ....+.+ .+...+..+.|+
T Consensus 313 ~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~ 392 (485)
T COG3349 313 GWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPS 392 (485)
T ss_pred CccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCc
Confidence 5433221 1111 11111111111110 000000 0000110 011112233333
Q ss_pred CCCcc-eeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcccc
Q 002928 354 HTPEH-TLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 354 ~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
..... .........+.+.-.+.....+++...+.+|++++|+|. ..+.+|+|..||+++|+.+++..
T Consensus 393 ~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 393 LAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred hhcccccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 33222 011112233333333333334444456789999999984 66677999999999999998543
No 42
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.82 E-value=2.2e-20 Score=212.39 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCce
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQY 293 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (864)
...++++|++.+++.|++|+.+++|++|+. ++.+.|+|++| ++.||+||+|++++.. .+++. .....++...+
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~-~l~~~----~~~~~~p~~~~ 254 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA-SHFPQ----FERSIAIVSSD 254 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc-ccChh----hcCeEEEeccc
Confidence 358999999999999999999999999975 55678888888 7999999999987743 23321 11111111122
Q ss_pred eeceEEEecC--CCCCCCCcCCccc---ceecc-CCCCceEEEEec-----cc--------cccCccCCCCeEEEcCCCC
Q 002928 294 VYSDIFLHRD--KNFMPRNPAAWSA---WNFLG-STGGKVCLTYWL-----NV--------VQNIEETRLPFLVTLNPDH 354 (864)
Q Consensus 294 ~~~~~~l~~d--~~~~p~~~~~~~~---~~~~~-~~~~~~~~~~~~-----~~--------~~~l~~~~~~~~~~l~p~~ 354 (864)
...+.++... ...++......++ ..|++ .++++.++.... .. .....+.+.+.+.+++|.+
T Consensus 255 ~~~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L 334 (460)
T TIGR03329 255 MVITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPAL 334 (460)
T ss_pred eEecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhCCCc
Confidence 1122222210 1122222222222 13444 445555543110 00 0001112233456688887
Q ss_pred CCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 355 TPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 355 ~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
....+.+.|....|.-. +..+.+......+|+|+|.+|+|+|+ ..+..+|+.+|+.|+|...+
T Consensus 335 ~~~~i~~~W~G~~~~t~----D~~P~iG~~~~~~gl~~a~G~~G~Gv-~~a~~~G~~lA~li~g~~~~ 397 (460)
T TIGR03329 335 AEVPIAASWNGPSDRSV----TGLPFFGRLNGQPNVFYGFGYSGNGV-APSRMGGQILSSLVLGLDNP 397 (460)
T ss_pred CCCeeeEEEeceeCCCC----CCCceeeeecCCCCEEEEeCcCCCCh-hHHHHHHHHHHHHhcCCCCc
Confidence 77778889985443211 11222222234689999999999999 99999999999999997533
No 43
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=9e-20 Score=192.87 Aligned_cols=165 Identities=21% Similarity=0.393 Sum_probs=126.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~ 706 (864)
.++.+|||||||+|.++..+++. +++|+|||+|+++++.|+++....+...+++++++|+++++ .+++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46789999999999999999985 89999999999999999988776555568999999999987 66799999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCC----CCCCHHHHHHHHhcCCCcEEE
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGG----CLPSLNRITSAMTSSSRLCVE 782 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~~~~~~l~~~~gf~v~ 782 (864)
||+ .++..+++++.++|||||.+++.++......+........++.+.+.++. .+.+.+++.+.+++ +||++.
T Consensus 209 eHv--~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~-aGf~i~ 285 (322)
T PLN02396 209 EHV--ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR-ASVDVK 285 (322)
T ss_pred Hhc--CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH-cCCeEE
Confidence 999 56799999999999999999998875432211111111222333333332 35688999888886 899998
Q ss_pred EEEeccccHHHHHHHH
Q 002928 783 DLENIGIHYYQTLRCW 798 (864)
Q Consensus 783 ~~~~~~~~y~~tl~~w 798 (864)
++. |..|.+....|
T Consensus 286 ~~~--G~~~~p~~~~w 299 (322)
T PLN02396 286 EMA--GFVYNPITGRW 299 (322)
T ss_pred EEe--eeEEcCcCCeE
Confidence 774 44455444444
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.81 E-value=3.9e-19 Score=183.40 Aligned_cols=193 Identities=18% Similarity=0.259 Sum_probs=145.3
Q ss_pred chHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHH
Q 002928 569 TLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIV 648 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (864)
.+++..+.++.+||..+.+..+... ....+.++..+.++++.+|||+|||+|.++..++
T Consensus 6 ~~~~~f~~~a~~yd~~~~~~~~~~~---------------------~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la 64 (231)
T TIGR02752 6 RVHKVFEKIYKKYDRMNSVISFQRH---------------------KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALA 64 (231)
T ss_pred HHHHHHHHhhhHHhHHHHHhcCCch---------------------HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHH
Confidence 3456678888999887666432111 2223577788888999999999999999999999
Q ss_pred Hh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhcc
Q 002928 649 KQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLL 725 (864)
Q Consensus 649 ~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~L 725 (864)
+. ++++|+|+|+|+++++.|+++.+..++ ++++++++|+.+++ ++++||+|++..+++|+ +++..+++++.++|
T Consensus 65 ~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~L 141 (231)
T TIGR02752 65 EAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVV 141 (231)
T ss_pred HHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccC--CCHHHHHHHHHHHc
Confidence 87 457999999999999999999887777 48999999999887 66899999999999999 56789999999999
Q ss_pred ccCcEEEEEEecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 726 AEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP-------------------GGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 726 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
||||++++.+...+.... +.....+..+.+.| ...+|+..++.+.+++ +||++.+++.
T Consensus 142 k~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~~~~~~ 218 (231)
T TIGR02752 142 KPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQE-AGFKDVEVKS 218 (231)
T ss_pred CcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCeeEEEE
Confidence 999999987765443210 00000000000000 1246788999888886 9999888776
Q ss_pred cc
Q 002928 787 IG 788 (864)
Q Consensus 787 ~~ 788 (864)
+.
T Consensus 219 ~~ 220 (231)
T TIGR02752 219 YT 220 (231)
T ss_pred cc
Confidence 54
No 45
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.80 E-value=6.8e-19 Score=169.87 Aligned_cols=148 Identities=19% Similarity=0.287 Sum_probs=127.6
Q ss_pred hHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHH
Q 002928 570 LTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVK 649 (864)
Q Consensus 570 ~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (864)
+..-+++++..||++||..++.... -.-+....+++..+++++||++||||.++..+.+
T Consensus 62 V~~vF~~vA~~YD~mND~mSlGiHR---------------------lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~ 120 (296)
T KOG1540|consen 62 VHHVFESVAKKYDIMNDAMSLGIHR---------------------LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILR 120 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhH---------------------HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHH
Confidence 3556788999999999998754331 1224677889999999999999999999999998
Q ss_pred h-cC------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHH
Q 002928 650 Q-TG------CKYTGITLSEEQLKYAEMKVKEAGLQDH--IRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFG 719 (864)
Q Consensus 650 ~-~~------~~v~gid~s~~~~~~a~~~~~~~~l~~~--v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~ 719 (864)
. .. .+|+.+|+|++|++.+++|..+.++.+. +.++++|++++| ++.+||..++.+.|..+ .++++.++
T Consensus 121 ~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~--th~~k~l~ 198 (296)
T KOG1540|consen 121 HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV--THIQKALR 198 (296)
T ss_pred hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC--CCHHHHHH
Confidence 7 33 6899999999999999999988887655 999999999999 88999999999999999 46899999
Q ss_pred HHHhccccCcEEEEEEecCCC
Q 002928 720 CCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 720 ~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+++|+|||||++.+-++....
T Consensus 199 EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 199 EAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHhcCCCcEEEEEEccccc
Confidence 999999999999988776544
No 46
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=1.1e-19 Score=176.66 Aligned_cols=162 Identities=25% Similarity=0.456 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~ 706 (864)
-+|.+|||||||-|.++..+|+. |++|+|+|+|+++++.|+.+..+.++ ++++.+..++++. ..++||+|+|.+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 99999999999999999999999887 5888888888887 44899999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCC-----CCCHHHHHHHHhcCCCcEE
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGC-----LPSLNRITSAMTSSSRLCV 781 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~-----~~~~~~~~~~l~~~~gf~v 781 (864)
||+ ++++.++++|.+++||||.++++++......+........++-+ ++|.+. +-..+++...+.. +++.+
T Consensus 135 EHv--~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~ 210 (243)
T COG2227 135 EHV--PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKI 210 (243)
T ss_pred Hcc--CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceE
Confidence 999 56799999999999999999999987544322111111222222 345433 3456777776664 78887
Q ss_pred EEEEeccccHHHHHHHH
Q 002928 782 EDLENIGIHYYQTLRCW 798 (864)
Q Consensus 782 ~~~~~~~~~y~~tl~~w 798 (864)
.+.. |.+|.+-...|
T Consensus 211 ~~~~--g~~y~p~~~~~ 225 (243)
T COG2227 211 IDRK--GLTYNPLTNSW 225 (243)
T ss_pred Eeec--ceEeccccceE
Confidence 6654 44554443333
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=2.5e-18 Score=179.51 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
++.++.+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|++|++.|+++.+..++.++++++++|+.+++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 345567777776 55679999999999999999997 88999999999999999999999888779999999998875
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc-cCccchh--------hhcccCCCCC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH-RLSPGFI--------KEYIFPGGCL 763 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~--------~~~i~p~~~~ 763 (864)
.+++||+|++..+++|+ +++..+++++.++|||||++++..+.......... ....... .....|. ..
T Consensus 109 ~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 185 (255)
T PRK11036 109 LETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YP 185 (255)
T ss_pred cCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CC
Confidence 56799999999999999 56789999999999999999987655322110000 0000000 0111222 23
Q ss_pred CCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 764 PSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.+++.+.+++ +||+++++.-++
T Consensus 186 ~~~~~l~~~l~~-aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEE-AGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHH-CCCeEeeeeeEE
Confidence 467888888876 899998766554
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=9.7e-19 Score=170.49 Aligned_cols=151 Identities=23% Similarity=0.395 Sum_probs=119.1
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcccCCCCCCCCccEEEEch
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----HIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
|++|||+|||.|.++..||+. |++|+|||+++++++.|++......... ++++.+.|++.+. ++||+|+|.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 588999999999999999997 9999999999999999999854433322 3677778888776 5699999999
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCC----CCCHHHHHHHHhcCCCcE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGC----LPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~----~~~~~~~~~~l~~~~gf~ 780 (864)
++||+ ++++.+++.+.++|||||.+++.++...-..+.........+.+.+.+|.+ ++++.++...+.. .++.
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~-~~~~ 243 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA-NGAQ 243 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh-cCcc
Confidence 99999 889999999999999999999999876554333222333344443344443 6788898888876 7888
Q ss_pred EEEEEe
Q 002928 781 VEDLEN 786 (864)
Q Consensus 781 v~~~~~ 786 (864)
+.++..
T Consensus 244 v~~v~G 249 (282)
T KOG1270|consen 244 VNDVVG 249 (282)
T ss_pred hhhhhc
Confidence 877644
No 49
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=2e-17 Score=172.79 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 614 QMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 614 q~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
|.+....+++.+...++.+|||||||+|.++..++++ ++++|+|+|+|+.|++.|+++ +++++++|+++++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 85 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK 85 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC
Confidence 3455668888888889999999999999999999988 678999999999999999763 5889999998877
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccc----ccCccchhh---hccc-CCCCCC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE----HRLSPGFIK---EYIF-PGGCLP 764 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~---~~i~-p~~~~~ 764 (864)
++++||+|+|+.+++|+ .++..++++++++|||||++++............ ......|.. ...+ .+..+.
T Consensus 86 ~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 163 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV--PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQ 163 (255)
T ss_pred CCCCceEEEEehhhhhC--CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCC
Confidence 66799999999999999 4679999999999999999999654321111000 000011211 1111 123466
Q ss_pred CHHHHHHHHhcCCCcEEEEEEe
Q 002928 765 SLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 765 ~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
+..++.+.+.+ +||++...+.
T Consensus 164 ~~~~~~~~l~~-aGf~v~~~~~ 184 (255)
T PRK14103 164 TPAGYAELLTD-AGCKVDAWET 184 (255)
T ss_pred CHHHHHHHHHh-CCCeEEEEee
Confidence 88899888886 9998765544
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=4.2e-17 Score=171.72 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 002928 611 EVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ 690 (864)
Q Consensus 611 ~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (864)
+-+..-+.+.++..+...++.+|||||||+|.++..++.....+|+|+|+|+.|+..++...+..+...++.+..+|+++
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 44445566788888888889999999999999999998873347999999999998765433322333478999999999
Q ss_pred CCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHH
Q 002928 691 LPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRIT 770 (864)
Q Consensus 691 ~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 770 (864)
++...+||+|+|+++++|+ .++..++++++++|||||.+++.+................+ .+. .--..+|+..++.
T Consensus 183 lp~~~~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-~k~-~nv~flpS~~~L~ 258 (314)
T TIGR00452 183 LHELYAFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-AKM-KNVYFIPSVSALK 258 (314)
T ss_pred CCCCCCcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-Hhc-cccccCCCHHHHH
Confidence 9855689999999999999 67899999999999999999998776443221111111111 110 0012468999999
Q ss_pred HHHhcCCCcEEEEEEecccc--HHHHHHHHH
Q 002928 771 SAMTSSSRLCVEDLENIGIH--YYQTLRCWR 799 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~~~--y~~tl~~w~ 799 (864)
..+++ +||+.+++.+.... .......|.
T Consensus 259 ~~L~~-aGF~~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 259 NWLEK-VGFENFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred HHHHH-CCCeEEEEEeccCCCHHHhhhhhhh
Confidence 88886 99999987765432 233444454
No 51
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=3e-17 Score=175.41 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 614 QMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 614 q~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
...+.+.++..++..++.+|||||||+|.++..+++....+|+|+|+|+.++..++......+...+++++.+|+++++.
T Consensus 107 s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 107 SDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 34456777778876678999999999999999999973347999999999998766544433334589999999999986
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPG-GCLPSLNRITSA 772 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~ 772 (864)
+++||+|+|.++++|+ .++..++++++++|||||.+++.++...............+ .+ +++ ..+|+..++.+.
T Consensus 187 ~~~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~--~~~~~~lps~~~l~~~ 261 (322)
T PRK15068 187 LKAFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AK--MRNVYFIPSVPALKNW 261 (322)
T ss_pred cCCcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hc--CccceeCCCHHHHHHH
Confidence 6789999999999999 67899999999999999999998765443221111111111 00 111 246899999999
Q ss_pred HhcCCCcEEEEEEeccc
Q 002928 773 MTSSSRLCVEDLENIGI 789 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~~ 789 (864)
+++ +||+.+.+.+...
T Consensus 262 L~~-aGF~~i~~~~~~~ 277 (322)
T PRK15068 262 LER-AGFKDVRIVDVSV 277 (322)
T ss_pred HHH-cCCceEEEEeCCC
Confidence 986 9999998887654
No 52
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=8.7e-17 Score=160.34 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=117.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDR 699 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (864)
.+++.+...++.+|||+|||+|..+.+++++ +.+|+|+|+|+++++.++++.+..++. ++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCE
Confidence 4556666667889999999999999999997 889999999999999999999888874 69999999988774568999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCc
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf 779 (864)
|++..+++|+++++...+++++.++|||||++++.......... ... -+| ...+.+++.+.++ ||
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~~~--------~~~--~~~~~~el~~~~~---~~ 163 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTV--------GFP--FAFKEGELRRYYE---GW 163 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--CCC--------CCC--CccCHHHHHHHhC---CC
Confidence 99999999998778999999999999999997664433222110 000 011 2346777766543 78
Q ss_pred EEEEEEe
Q 002928 780 CVEDLEN 786 (864)
Q Consensus 780 ~v~~~~~ 786 (864)
++...+.
T Consensus 164 ~~~~~~~ 170 (197)
T PRK11207 164 EMVKYNE 170 (197)
T ss_pred eEEEeeC
Confidence 8876643
No 53
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=4.8e-17 Score=147.23 Aligned_cols=107 Identities=26% Similarity=0.412 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEch-h
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY-RQLPKSNKYDRIISCE-M 705 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~v~s~~-~ 705 (864)
|+.+|||||||+|.++..++++ ++++|+|+|+|+++++.|++++.+.+..++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 6789999999999999999995 79999999999999999999998788888999999999 4444557899999999 5
Q ss_pred hhhhCh-hhHHHHHHHHHhccccCcEEEEEE
Q 002928 706 IEAVGH-DYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 706 ~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++++.. ++..++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554432 568899999999999999999965
No 54
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=166.48 Aligned_cols=165 Identities=20% Similarity=0.214 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 002928 612 VAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ 690 (864)
Q Consensus 612 ~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (864)
..|....+.+++.+.++++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++. .+++++.+|+.+
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 345566778889998889999999999999999999987 5789999999999999998874 268999999988
Q ss_pred CCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccc----ccccCccchhhhcccCC---CCC
Q 002928 691 LPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCY----DEHRLSPGFIKEYIFPG---GCL 763 (864)
Q Consensus 691 ~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~~~i~p~---~~~ 763 (864)
+.++.+||+|+++.+++|+ .+...+++++.++|||||.++++......... ........|...+..++ ..+
T Consensus 88 ~~~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 165 (258)
T PRK01683 88 WQPPQALDLIFANASLQWL--PDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPL 165 (258)
T ss_pred cCCCCCccEEEEccChhhC--CCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCC
Confidence 7655799999999999999 45789999999999999999996432111100 00011123433332222 356
Q ss_pred CCHHHHHHHHhcCCCcEEEEEE
Q 002928 764 PSLNRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~ 785 (864)
|+..++.+.+.+ +|+.+...+
T Consensus 166 ~~~~~~~~~l~~-~g~~v~~~~ 186 (258)
T PRK01683 166 PPPHAYYDALAP-AACRVDIWH 186 (258)
T ss_pred CCHHHHHHHHHh-CCCceeeee
Confidence 788888888886 787765433
No 55
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.71 E-value=1.3e-15 Score=165.06 Aligned_cols=365 Identities=13% Similarity=0.124 Sum_probs=209.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCee-eccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVD-LDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~-~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
.||+|||||++||++|++|++.|.+|+|+|+++.+||++.+...+|.. .+.|+|.++. ....+.+++.++.- .....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~~~-~~~~~ 79 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT-NNQYVWDYISPFFE-LNNYQ 79 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec-CcHHHHHHHHhhcc-cccee
Confidence 489999999999999999999999999999999999999988777754 4889999864 45667777776531 11111
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHH---HhcC
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFV---ETRG 156 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~~ 156 (864)
. ......+|+.++++... ..+..+..... ......+..... .. .... +..++.+|. ...
T Consensus 80 ~-~~~~~~~g~~~~~P~~~------~~i~~l~~~~~---~~~~~~~l~~~~---~~-~~~~---~~~~~~e~~d~~~~~- 141 (377)
T TIGR00031 80 H-RVLALYNNLDLTLPFNF------NQFRKLLGVKD---AQELQNFFNAQF---KY-GDHV---PLEELQEIADPDIQL- 141 (377)
T ss_pred E-EEEEEECCeEEccCCCH------HHHHHhcccch---HHHHHHHHHHHh---hc-ccCC---CCCCHHHHHHHHHHH-
Confidence 1 12233556666554421 11111111111 111111111100 00 0000 123455555 555
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCc
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGC 236 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~ 236 (864)
+++.+.+.++.|+..++|+.+++++++.-+. -+..--+.. ...+......+|++|+..+++.|+++- +++|++|+
T Consensus 142 ~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d-~~yf~d~~q~~P~~Gyt~~~~~ml~~~---~i~v~l~~ 216 (377)
T TIGR00031 142 LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSED-SSYFPDRYQGLPKGGYTKLFEKMLDHP---LIDVKLNC 216 (377)
T ss_pred HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCC-CCcccccccccccccHHHHHHHHHhcC---CCEEEeCC
Confidence 8889999999999999999999998422111 000000010 112333455689999999999999764 68999999
Q ss_pred ceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeeceEEEec-CCCCCCCCcCCcc
Q 002928 237 EVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYSDIFLHR-DKNFMPRNPAAWS 315 (864)
Q Consensus 237 ~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~l~~-d~~~~p~~~~~~~ 315 (864)
.+..++..+++|.+. ++ .+. +.||.|.|.+..-. .....++|.+...-... +.. .-....
T Consensus 217 ~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~f~~e~~~~~----~~q~~~ 277 (377)
T TIGR00031 217 HINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLKFEWERHEFK----NFQGYA 277 (377)
T ss_pred ccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEEEEEEEeccc----cCCCCe
Confidence 888887655555442 23 233 88999988775422 23345666654432221 111 101111
Q ss_pred cceecc-CCCCceEEEEeccccccCccCCCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhh-cCCCCeEEE
Q 002928 316 AWNFLG-STGGKVCLTYWLNVVQNIEETRLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHI-QGKRGIWFC 393 (864)
Q Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~-~~~~~l~~a 393 (864)
.++|+. .+-.|....-.+.. +. .....+.+-.|..- ....+...+|+++...........++ ...+||+++
T Consensus 278 ~vnyp~~~~~tRI~e~k~f~~-~~---~~~t~i~~E~~~~~---~~~~~~pyYpi~~~~~~~~~~~y~~la~~~~~v~~~ 350 (377)
T TIGR00031 278 VVNFPLNVPITRIVEYKHLTY-VG---SKQTIVSKEYPGEW---KVGDPEPYYPVNDNKNMALFKKYLELASREDNLILL 350 (377)
T ss_pred EEEcCCCCCcceEEeeecCCC-CC---CCCeEEEeecchhh---cCCCceeeeeccCHHHHHHHHHHHHHHhcCCCEEEe
Confidence 233331 12223333222221 11 11112222222211 11123567888888777666666653 234699999
Q ss_pred eccC---CCCCChhhHhHHHHHHHHhc
Q 002928 394 GAYQ---GYGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 394 G~~~---g~G~~e~a~~sG~~aA~~il 417 (864)
|.+. .+.+ ..|+.+|..+|+.++
T Consensus 351 GRlg~y~Y~nM-D~~i~~al~~~~~~~ 376 (377)
T TIGR00031 351 GRLAEYQYYDM-DQAILAALYKAEQLL 376 (377)
T ss_pred eeeeEeEeecH-HHHHHHHHHHHHHhh
Confidence 9954 4445 999999999999863
No 56
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.71 E-value=1.3e-16 Score=169.07 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=121.6
Q ss_pred HHHHHHcCC-CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 619 SLLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 619 ~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
+.+++.+.+ .++.+|||||||+|.++..+++. ++.+|+++|+|++|++.|+++... .+++++.+|+++++ +++
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC
Confidence 445666654 46789999999999999999887 567999999999999999987542 36899999999988 678
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHh
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF-PGGCLPSLNRITSAMT 774 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~l~ 774 (864)
+||+|++..+++|++ +....++++.++|||||++++.....+.. |..++.- .....++.+++.+.++
T Consensus 178 sFDvVIs~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~----------~~~r~~~~~~~~~~t~eEl~~lL~ 245 (340)
T PLN02490 178 YADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTF----------WLSRFFADVWMLFPKEEEYIEWFT 245 (340)
T ss_pred ceeEEEEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcch----------hHHHHhhhhhccCCCHHHHHHHHH
Confidence 999999999999994 56889999999999999998865443321 1111100 0112468899988888
Q ss_pred cCCCcEEEEEEeccccH
Q 002928 775 SSSRLCVEDLENIGIHY 791 (864)
Q Consensus 775 ~~~gf~v~~~~~~~~~y 791 (864)
+ +||+.+.+++++..+
T Consensus 246 ~-aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 246 K-AGFKDVKLKRIGPKW 261 (340)
T ss_pred H-CCCeEEEEEEcChhh
Confidence 6 899999988876543
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.70 E-value=4.9e-16 Score=154.66 Aligned_cols=149 Identities=12% Similarity=0.123 Sum_probs=115.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDR 699 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (864)
.+++.+...++.+|||+|||+|.++.+++++ +.+|+|+|+|+.+++.+++++...++ ++++.+.|+...+.+++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCE
Confidence 4555566656789999999999999999997 88999999999999999999888877 47888888876654468999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCc
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf 779 (864)
|+++.+++|++.++...+++++.++|||||++++........ +. .. .|..+..+.+++.+.+. +|
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~ 162 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DW 162 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CC
Confidence 999999999987788999999999999999976654332211 00 00 12234567888876653 58
Q ss_pred EEEEEEe
Q 002928 780 CVEDLEN 786 (864)
Q Consensus 780 ~v~~~~~ 786 (864)
++...+.
T Consensus 163 ~~~~~~e 169 (195)
T TIGR00477 163 ELLKYNE 169 (195)
T ss_pred eEEEeec
Confidence 8877663
No 58
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.69 E-value=1.2e-15 Score=169.23 Aligned_cols=251 Identities=13% Similarity=0.109 Sum_probs=147.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCC--------------------eeeccceeeccCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDG--------------------VDLDLCFMVFNRVTY 61 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G--------------------~~~d~G~~~~~~~~~ 61 (864)
||+|||+|++|+.+|..|+++|.+|+++|++++.||+.+|.+..+ +.+|+.++.+. ..
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~--~~ 83 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM--AS 83 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee--cC
Confidence 899999999999999999999999999999999999999974422 22444454442 23
Q ss_pred hHHHHHHHHcCCCcccccc--eeeEEe-cCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhc-
Q 002928 62 PNMMEFFESLGVDMEISDM--SFSVSL-DKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLE- 137 (864)
Q Consensus 62 ~~~~~l~~~lG~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (864)
..+..++.+.++....... ...... .+|+....+.. .. ..+ ....+. .+ .-+.+.+|......+.....
T Consensus 84 G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s-~~-~~~--~s~ll~-l~--eKr~l~kfl~~v~~~~~~~~~ 156 (443)
T PTZ00363 84 GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPAT-DM-EAL--SSPLMG-FF--EKNRCKNFLQYVSNYDENDPE 156 (443)
T ss_pred ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCC-HH-HHh--hCCCcc-hh--hHHHHHHHHHHHHhhccCChh
Confidence 4555777777766543211 111122 33443332220 00 000 001111 00 11122233332222111100
Q ss_pred cCCcC-CCCccHHHHHHhcCCCHHHHHHHHhhhh---hcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCC
Q 002928 138 NNADI-DRNETLGQFVETRGYSELFQKAYLVPVC---GSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSR 213 (864)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (864)
..... .+..++.+|++..++++...+.+...+. ...+...+... ....+..++.. ...++...+.++.||
T Consensus 157 ~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~---tl~ri~~y~~S---~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 157 THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE---TVMRIKLYMDS---LSRYGKSPFIYPLYG 230 (443)
T ss_pred hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH---HHHHHHHHHHH---HhhccCCcceeeCCC
Confidence 00111 1357999999999998876553322221 11121111110 11111122221 122333456788999
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEcc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAV 267 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~ 267 (864)
++.++++|++.+...|++++++++|++|+.++++ +.|++++|+++.|+.||+..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 9999999999999999999999999999887543 57889999899999999853
No 59
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.69 E-value=6.5e-16 Score=161.29 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 613 AQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 613 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
.|....+.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|++|++.|+++.. .+.++++|+++++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc
Confidence 45667778888887777889999999999999999886 8899999999999999988742 3578899999988
Q ss_pred -CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhc-ccCCCCCCCHHHHH
Q 002928 693 -KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEY-IFPGGCLPSLNRIT 770 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-i~p~~~~~~~~~~~ 770 (864)
++++||+|+++.+++++ .++..+++++.++|||||.+++.++...... ... ..|..-. ......+++..++.
T Consensus 99 ~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~--~~~~~~~~~~~~~~~~~~~~l~ 172 (251)
T PRK10258 99 LATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLP--ELH--QAWQAVDERPHANRFLPPDAIE 172 (251)
T ss_pred CCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHH--HHHHHhccCCccccCCCHHHHH
Confidence 67799999999999998 5689999999999999999999876543211 110 0111000 01123467888888
Q ss_pred HHHhcCCCcEEEEEEeccccHH
Q 002928 771 SAMTSSSRLCVEDLENIGIHYY 792 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~~~y~ 792 (864)
+.+.. .++.. +.+.+...|.
T Consensus 173 ~~l~~-~~~~~-~~~~~~~~f~ 192 (251)
T PRK10258 173 QALNG-WRYQH-HIQPITLWFD 192 (251)
T ss_pred HHHHh-CCcee-eeeEEEEECC
Confidence 88775 77765 4555555543
No 60
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.68 E-value=2.1e-16 Score=138.35 Aligned_cols=94 Identities=30% Similarity=0.487 Sum_probs=83.9
Q ss_pred EEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChh
Q 002928 634 LEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHD 712 (864)
Q Consensus 634 LDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~ 712 (864)
||+|||+|..+..++++++.+|+++|+|+++++.++++.... ++.++++|+++++ ++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 899999999999999987889999999999999999987643 5679999999999 88999999999999999 7
Q ss_pred hHHHHHHHHHhccccCcEEEE
Q 002928 713 YMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 713 ~~~~~l~~~~~~LkpgG~l~i 733 (864)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 899999999999999999986
No 61
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=9.5e-16 Score=159.35 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
....++..+...++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++...++..+++++.+|+.+.+ .
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 33466677777788999999999999999999884 48999999999999999999877666668999999998877 5
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc-------cCC------
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI-------FPG------ 760 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i-------~p~------ 760 (864)
.++||+|++..+++|+ .++..+++++.++|+|||++++.++..+.... ......+....+ +.+
T Consensus 119 ~~~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T PRK00216 119 DNSFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYS 194 (239)
T ss_pred CCCccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence 6789999999999999 56899999999999999999998776544321 000000000000 000
Q ss_pred ------CCCCCHHHHHHHHhcCCCcEEEEEEeccc
Q 002928 761 ------GCLPSLNRITSAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 761 ------~~~~~~~~~~~~l~~~~gf~v~~~~~~~~ 789 (864)
..+++..++.+.+.+ +||++..+..+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 228 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEE-AGFERVRYRNLTG 228 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHh-CCCceeeeeeeec
Confidence 234677888887776 9999988877643
No 62
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=5.8e-16 Score=160.49 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=99.5
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISC 703 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~ 703 (864)
++++.+|||||||+|..+..+++. ++++|+|+|+|++|++.|++++...+...+++++++|+.+++. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 457889999999999999998872 6789999999999999999999888877789999999998873 359999999
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
.+++|+++++...++++++++|||||.+++.+...
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999987778899999999999999999987543
No 63
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=9.2e-16 Score=157.64 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=138.8
Q ss_pred HHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc
Q 002928 572 QARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT 651 (864)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 651 (864)
..++.|+++||..+..+..+.. ......+++.+...++.+|||+|||+|..+..+++..
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 4578899999988776543221 2233466666666788999999999999999999883
Q ss_pred C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccC
Q 002928 652 G--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 652 ~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
+ ++++++|+++.+++.++++.. ...+++++.+|+.+.+ ++++||+|++..+++|+ .++..+++++.++|+||
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV--TDIQKALREMYRVLKPG 136 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCC
Confidence 3 599999999999999998875 3357999999998887 55789999999999998 56899999999999999
Q ss_pred cEEEEEEecCCCcccccccCccchhhhcccC------------------C-CCCCCHHHHHHHHhcCCCcEEEEEEeccc
Q 002928 729 GLLLLQFISVPDQCYDEHRLSPGFIKEYIFP------------------G-GCLPSLNRITSAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 729 G~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p------------------~-~~~~~~~~~~~~l~~~~gf~v~~~~~~~~ 789 (864)
|++++.+...+.... ......+....++| . ..+++..++.+.+.+ +||++..++.+..
T Consensus 137 G~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 213 (223)
T TIGR01934 137 GRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKE-AGFEEVRYRSLTF 213 (223)
T ss_pred cEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH-cCCccceeeeeec
Confidence 999998765443210 00000011111100 0 124577788888886 8999888776654
No 64
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=4.8e-16 Score=158.06 Aligned_cols=140 Identities=19% Similarity=0.294 Sum_probs=104.0
Q ss_pred chHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHH
Q 002928 569 TLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIV 648 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (864)
.++...+.|+.+||..|.+.++..+. .-.++.++.+.... .++.+|||||||+|.++..++
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~-----------------~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~ 70 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDV-----------------RWRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFK 70 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcH-----------------HHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHH
Confidence 34566788999999877765432221 00112222222222 347899999999999999999
Q ss_pred HhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhcccc
Q 002928 649 KQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAE 727 (864)
Q Consensus 649 ~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkp 727 (864)
+..+.+|+|+|+|++|++.|+++ ..++++|++++| ++++||+|++..+++|+ .++++.+++++|+|||
T Consensus 71 ~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 71 KVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRK 139 (226)
T ss_pred HhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcC
Confidence 87557999999999999999864 135789999999 78999999999999999 6789999999999999
Q ss_pred CcEEEEEEecCCC
Q 002928 728 HGLLLLQFISVPD 740 (864)
Q Consensus 728 gG~l~i~~~~~~~ 740 (864)
. +++.++..++
T Consensus 140 ~--~~ile~~~p~ 150 (226)
T PRK05785 140 Q--VGFIAMGKPD 150 (226)
T ss_pred c--eEEEEeCCCC
Confidence 3 3333444443
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.67 E-value=1.1e-14 Score=151.64 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=120.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (864)
.+.+++.+.+.++.+|||+|||+|.++..+++. ++++|+|+|+|+.+++.++++.. ....++++...|+.+++ .+
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCC
Confidence 356778888999999999999999999999987 35799999999999999998733 23358999999998877 66
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc-c-CccchhhhcccCCCCCCCHHHHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH-R-LSPGFIKEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~-~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (864)
++||+|++..+++|+ .++..+++++.++|||||.+++.+........... . ....+...+........+...+.+.
T Consensus 86 ~~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 86 GSFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGL 163 (241)
T ss_pred CCceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 899999999999999 56899999999999999999997754222111100 0 0011111111011122234566666
Q ss_pred HhcCCCcEEEEEEecc
Q 002928 773 MTSSSRLCVEDLENIG 788 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~ 788 (864)
+.+ +||....++...
T Consensus 164 l~~-aGf~~~~~~~~~ 178 (241)
T PRK08317 164 FRE-AGLTDIEVEPYT 178 (241)
T ss_pred HHH-cCCCceeEEEEE
Confidence 775 899877665543
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.66 E-value=3.1e-15 Score=144.51 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=109.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDR 699 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (864)
.+++.++.-++.++||+|||.|..+.+||++ |..|+++|.|+..++.+++.+++.++ .|+..+.|+.+...++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCE
Confidence 4455556556679999999999999999998 99999999999999999999998888 49999999988775578999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCc
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf 779 (864)
|+|..+++|+..+..+.+++++.+.++|||++++.++..... +... . |...+....++.... .++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~---~--------~~~f~~~~~EL~~~y---~dW 162 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCP---S--------PFPFLLKPGELREYY---ADW 162 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--S---S----------S--B-TTHHHHHT---TTS
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCC---C--------CCCcccCHHHHHHHh---CCC
Confidence 999999999998999999999999999999999977653322 1110 0 112334566776653 578
Q ss_pred EEEEE
Q 002928 780 CVEDL 784 (864)
Q Consensus 780 ~v~~~ 784 (864)
++...
T Consensus 163 ~il~y 167 (192)
T PF03848_consen 163 EILKY 167 (192)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88765
No 67
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.66 E-value=1.6e-15 Score=160.26 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=119.2
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEE
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRII 701 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~ 701 (864)
..++++.+|||||||+|..+..+++.. ..+|+++|+|+++++.|+++....++. +++++.+|+++++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 457899999999999999988887763 358999999999999999998888875 8999999999988 667999999
Q ss_pred EchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEE
Q 002928 702 SCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCV 781 (864)
Q Consensus 702 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v 781 (864)
++.+++|.+ +...+++++.++|||||++++.++............. +..+..-.+...+..++.+.+.+ +||..
T Consensus 152 ~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~l~~-aGf~~ 225 (272)
T PRK11873 152 SNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRND---AELYAGCVAGALQEEEYLAMLAE-AGFVD 225 (272)
T ss_pred EcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHh---HHHHhccccCCCCHHHHHHHHHH-CCCCc
Confidence 999999984 5688999999999999999998876543211111100 01010001234567788888876 89998
Q ss_pred EEEEe
Q 002928 782 EDLEN 786 (864)
Q Consensus 782 ~~~~~ 786 (864)
..+..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87654
No 68
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=1e-15 Score=146.48 Aligned_cols=107 Identities=32% Similarity=0.564 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CCCccEEEEc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK--SNKYDRIISC 703 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--~~~fD~v~s~ 703 (864)
+.+.+|||+|||+|.++..++++ ++.+++|+|+|++|++.|+++++..+++ +++++++|+.+++. .++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999953 6789999999999999999999999987 99999999999772 3799999999
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.+++|+ .++..+++++.++|||+|.+++.++.
T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 56789999999999999999998776
No 69
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.65 E-value=2.4e-15 Score=155.25 Aligned_cols=214 Identities=16% Similarity=0.256 Sum_probs=139.8
Q ss_pred chHHHHHhhhhhhcCCh-HHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcC---CCCCCeEEEEcCCchHHH
Q 002928 569 TLTQARRNISRHYDLSN-ELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKAR---VSKGHEVLEIGCGWGTLA 644 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~-~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~---~~~~~~vLDiGcG~G~~~ 644 (864)
+....+..|..+||... +.+... |+.+........+........+.+++.+. ..++.+|||||||+|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~w~~~------y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~ 78 (230)
T PRK07580 5 NYLEHKSEVRTYFNRTGFDRWARI------YSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLS 78 (230)
T ss_pred hhhhchhhhhHHHhhhccchHHHh------hCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHH
Confidence 34556677788887432 233221 22221111111222222333444454443 467889999999999999
Q ss_pred HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhc
Q 002928 645 IEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESL 724 (864)
Q Consensus 645 ~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~ 724 (864)
..+++. +.+|+|+|+|+++++.|+++....+..+++++..+|+.. .+++||+|++..+++|+++++...+++++.++
T Consensus 79 ~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~ 155 (230)
T PRK07580 79 IPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASL 155 (230)
T ss_pred HHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhh
Confidence 999987 788999999999999999999888776689999999543 34789999999999999888888999999998
Q ss_pred cccCcEEEEEEecCCCcccccccCccchhhhcccC------CCCCCCHHHHHHHHhcCCCcEEEEEEeccc-cHHHHHHH
Q 002928 725 LAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP------GGCLPSLNRITSAMTSSSRLCVEDLENIGI-HYYQTLRC 797 (864)
Q Consensus 725 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p------~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~-~y~~tl~~ 797 (864)
+++++.+.+. ...... ....++.+ .+| .....+..++.+.+.+ +||++..++.+.. +|..++.+
T Consensus 156 ~~~~~~i~~~---~~~~~~----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~~~~~~~~~~~~~~~~ 226 (230)
T PRK07580 156 TRGSLIFTFA---PYTPLL----ALLHWIGG-LFPGPSRTTRIYPHREKGIRRALAA-AGFKVVRTERISSGFYFSRLLE 226 (230)
T ss_pred cCCeEEEEEC---CccHHH----HHHHHhcc-ccCCccCCCCccccCHHHHHHHHHH-CCCceEeeeeccchhHHHHHHH
Confidence 7655443321 111100 00011111 111 2234567788777775 8999999877644 56667776
Q ss_pred HHH
Q 002928 798 WRK 800 (864)
Q Consensus 798 w~~ 800 (864)
|.+
T Consensus 227 ~~~ 229 (230)
T PRK07580 227 AVR 229 (230)
T ss_pred Hhh
Confidence 653
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.65 E-value=2.5e-15 Score=153.32 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=126.7
Q ss_pred HHHHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 616 RKVSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 616 ~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
...+.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++....+..+++++.++|+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 44556666665 567899999999999999999986 78999999999999999999988776668999999998876
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc-----cCCCCCCCHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI-----FPGGCLPSLNR 768 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i-----~p~~~~~~~~~ 768 (864)
++||+|++..+++|++.++...+++++.+++++++.+.+.. ..... ....++.... .+....++.++
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWL----AFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHH----HHHHHHHhhCcCcccccceEEecHHH
Confidence 78999999999999987788999999999998776655421 11110 0111111111 11223457888
Q ss_pred HHHHHhcCCCcEEEEEEeccccHHH
Q 002928 769 ITSAMTSSSRLCVEDLENIGIHYYQ 793 (864)
Q Consensus 769 ~~~~l~~~~gf~v~~~~~~~~~y~~ 793 (864)
+.+.+.+ +||++...+.....+..
T Consensus 190 ~~~~l~~-~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 190 LERALGE-LGWKIVREGLVSTGFYN 213 (219)
T ss_pred HHHHHHH-cCceeeeeecccccchh
Confidence 8888875 99999998876655544
No 71
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.64 E-value=2.5e-14 Score=161.71 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChHHHHHhhcCC-CChHHHHhhccC
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAPDALRMLGNQ-ATFEEKRVLGAF 291 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~-~~~~~~~~l~~~ 291 (864)
...+++.|++.+.++|++|+++++|++|+.+++++ .|+|.++ ++.||+||+|++.+.. .+++.. .. ....+.-
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g~~---~pi~p~r 274 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLGVD---IPVYPLK 274 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhCCC---cccCCcc
Confidence 45889999999999999999999999999888876 4767665 7999999999987653 222210 00 0011111
Q ss_pred ceeeceEEEecCCCCCCCCcCCcccc--eeccCCCCceEEEEe--cccc-cc----CccCCCCeEEEcCCCCCCcceeee
Q 002928 292 QYVYSDIFLHRDKNFMPRNPAAWSAW--NFLGSTGGKVCLTYW--LNVV-QN----IEETRLPFLVTLNPDHTPEHTLFK 362 (864)
Q Consensus 292 ~~~~~~~~l~~d~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~-~~----l~~~~~~~~~~l~p~~~~~~~~~~ 362 (864)
.+. .++.+. +....|......... .+. ..+++..+... .... .. ..+.+.+.+.+++|......+...
T Consensus 275 g~~-~~~~~~-~~~~~p~~~~~~~~~~~~~~-~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~ 351 (416)
T PRK00711 275 GYS-LTVPIT-DEDRAPVSTVLDETYKIAIT-RFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATF 351 (416)
T ss_pred ceE-EEEecC-CCCCCCceeEEecccCEEEe-ecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccce
Confidence 111 111111 111111110000011 111 12333333211 1000 00 011122234456776555555666
Q ss_pred EEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccccccc
Q 002928 363 WSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCAI 423 (864)
Q Consensus 363 w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~~ 423 (864)
|....|... +..+.+... +.+|+|++.+|+|+|+ ..|..+|+.+|+.|+|...+.
T Consensus 352 w~G~r~~t~----D~~PiIG~~-~~~gl~~a~G~~g~G~-~~ap~~g~~la~li~g~~~~~ 406 (416)
T PRK00711 352 WTGLRPMTP----DGTPIVGAT-RYKNLWLNTGHGTLGW-TMACGSGQLLADLISGRKPAI 406 (416)
T ss_pred eeccCCCCC----CCCCEeCCc-CCCCEEEecCCchhhh-hhhhhHHHHHHHHHcCCCCCC
Confidence 775443211 111222222 2479999999999999 999999999999999877543
No 72
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.64 E-value=2.4e-15 Score=155.54 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
.++.+|||||||+|..+..++++ ++++|+|+|+|++|++.|+++++..+...+++++++|+.+++. ..+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 57789999999999999999985 5789999999999999999998877666689999999998873 3589999999
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+++|+++++...++++++++|||||.+++.+....
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 99999877889999999999999999999876543
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.63 E-value=7.6e-15 Score=157.68 Aligned_cols=160 Identities=16% Similarity=0.275 Sum_probs=125.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
.+.+++.+.++++.+|||||||+|.+++.++++ ++.+++++|+ +++++.+++++++.++.++|+++.+|+.+.+. ..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PE 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CC
Confidence 356777778888999999999999999999998 7789999998 78999999999999998899999999876542 24
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCC------CCCCHHHHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGG------CLPSLNRIT 770 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~------~~~~~~~~~ 770 (864)
+|+|++..++|+.+++....+++++++.|||||++++.++..++...... .++..++.+.+ ...+.+++.
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYK 291 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHH
Confidence 79999999999998777789999999999999999999886654322111 12222222211 233467787
Q ss_pred HHHhcCCCcEEEEE
Q 002928 771 SAMTSSSRLCVEDL 784 (864)
Q Consensus 771 ~~l~~~~gf~v~~~ 784 (864)
+.+++ +||+.+.+
T Consensus 292 ~ll~~-aGf~~v~~ 304 (306)
T TIGR02716 292 EILES-LGYKDVTM 304 (306)
T ss_pred HHHHH-cCCCeeEe
Confidence 77776 89986543
No 74
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=1.3e-15 Score=147.75 Aligned_cols=137 Identities=21% Similarity=0.335 Sum_probs=103.5
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
.+++.+|||||||.|.++..+++. +.+|+|+|+|+.+++. .++.....+....+ ++++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 578899999999999999999886 7899999999999988 13444544444333 5689999999999
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc---CCCCCCCHHHHHHHHhcCCCcEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF---PGGCLPSLNRITSAMTSSSRLCVE 782 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~---p~~~~~~~~~~~~~l~~~~gf~v~ 782 (864)
++|+ .++..+++++.++|||||++++.++.......... ..+ .+.. ....+.+.+++.+.+++ +||+++
T Consensus 88 l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~ll~~-~G~~iv 159 (161)
T PF13489_consen 88 LEHL--PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSF---LKW--RYDRPYGGHVHFFSPDELRQLLEQ-AGFEIV 159 (161)
T ss_dssp GGGS--SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHH---HHC--CGTCHHTTTTEEBBHHHHHHHHHH-TTEEEE
T ss_pred Hhhc--ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHH---Hhc--CCcCccCceeccCCHHHHHHHHHH-CCCEEE
Confidence 9999 46899999999999999999999887543110000 000 1111 12345688999888886 999987
Q ss_pred E
Q 002928 783 D 783 (864)
Q Consensus 783 ~ 783 (864)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 5
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=1.4e-14 Score=153.49 Aligned_cols=139 Identities=15% Similarity=0.214 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEA 708 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~ 708 (864)
++.+|||+|||+|.++.++++. +.+|+|+|+|+.+++.++++++..++ ++++.+.|+.+...+++||+|++..+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4459999999999999999997 89999999999999999999988887 78999999877655678999999999999
Q ss_pred hChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEE
Q 002928 709 VGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 709 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~ 785 (864)
++.++...+++++.++|+|||++++......... . . -.|.....+.+++.+.+. +|++...+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-~---~--------~~p~~~~~~~~el~~~~~---~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-P---C--------PMPFSFTFKEGELKDYYQ---DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC-C---C--------CCCCCcccCHHHHHHHhC---CCEEEEEe
Confidence 9877899999999999999999777443222211 0 0 012234456778877653 58888774
No 76
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.62 E-value=1e-14 Score=147.40 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
-|.+++...+..-.|.+|||||||.|.++..++.+....|+|+|.+.-...+.+....-.|....+.....-+++++..+
T Consensus 102 ~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 102 WKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred chHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 35667777775557899999999999999999998334699999999877665443333343334444445678887668
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHHh
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPG-GCLPSLNRITSAMT 774 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~l~ 774 (864)
.||+|+|.++++|. .++-..+++++..|+|||.+++.+...+............+-+ .++ ..+||...+..+++
T Consensus 182 ~FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~---m~nv~FiPs~~~L~~wl~ 256 (315)
T PF08003_consen 182 AFDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK---MRNVWFIPSVAALKNWLE 256 (315)
T ss_pred CcCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC---CCceEEeCCHHHHHHHHH
Confidence 99999999999999 7899999999999999999999998876643222111111110 111 24799999999998
Q ss_pred cCCCcEEEEEEecc
Q 002928 775 SSSRLCVEDLENIG 788 (864)
Q Consensus 775 ~~~gf~v~~~~~~~ 788 (864)
+ +||+-+++.+..
T Consensus 257 r-~gF~~v~~v~~~ 269 (315)
T PF08003_consen 257 R-AGFKDVRCVDVS 269 (315)
T ss_pred H-cCCceEEEecCc
Confidence 7 999988776654
No 77
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=2.1e-14 Score=140.30 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~ 705 (864)
++++.+|||||||+|..+..+++. ++++|+++|+|++|++.|++++++.+++ +++++++|+.+++.+++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc-
Confidence 345889999999999999999976 7899999999999999999999999986 5999999998877667899999975
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+ .+++.+++++.++|||||++++..
T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 356899999999999999999853
No 78
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.61 E-value=3.6e-14 Score=142.13 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=113.5
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEccc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA-----------GLQDHIRLYLCDY 688 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-----------~l~~~v~~~~~d~ 688 (864)
..++.+.+.++.+|||+|||.|..+.++|++ |.+|+|+|+|+.+++.+.+..... .-..+|+++++|+
T Consensus 25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred HHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 3444444457789999999999999999997 999999999999999864422100 0023799999999
Q ss_pred CCCC--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCH
Q 002928 689 RQLP--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSL 766 (864)
Q Consensus 689 ~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 766 (864)
.+++ ..++||.|+-..+++|++.+....+++.+.++|||||++++.++....... .. .| ...+.
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----~g--------pp--~~~~~ 169 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----AG--------PP--FSVSP 169 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----CC--------cC--CCCCH
Confidence 9887 246899999999999999888999999999999999998887765432211 00 11 23567
Q ss_pred HHHHHHHhcCCCcEEEEEEecc
Q 002928 767 NRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 767 ~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
+++.+.+. .+|+++.++...
T Consensus 170 ~eL~~~f~--~~~~i~~~~~~~ 189 (213)
T TIGR03840 170 AEVEALYG--GHYEIELLESRD 189 (213)
T ss_pred HHHHHHhc--CCceEEEEeecc
Confidence 78877665 367777666543
No 79
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.59 E-value=3.7e-14 Score=147.89 Aligned_cols=81 Identities=19% Similarity=0.061 Sum_probs=69.0
Q ss_pred CCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHH-HHHhhcCCCC
Q 002928 204 RPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPD-ALRMLGNQAT 281 (864)
Q Consensus 204 ~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~~~~~ 281 (864)
.+.|.|+.||++.++.++++.++++|++|++++.|.+|..++++ +.|..+||+++.++.||+++..+. ..+|++....
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence 46889999999999999999999999999999999999988876 589999999999999999865554 5588885444
Q ss_pred hHH
Q 002928 282 FEE 284 (864)
Q Consensus 282 ~~~ 284 (864)
+..
T Consensus 333 Pee 335 (561)
T KOG4254|consen 333 PEE 335 (561)
T ss_pred Cch
Confidence 443
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.59 E-value=2.3e-14 Score=161.47 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=106.6
Q ss_pred cEEEecCC---hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC-----cEEecCEEEEccChHHHH--Hh
Q 002928 206 QWLTVRSR---SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD-----FQRVYDGCIMAVHAPDAL--RM 275 (864)
Q Consensus 206 ~~~~~~gG---~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G-----~~~~ad~VV~A~~~~~~~--~l 275 (864)
.++.+..| ...++..|.+.+++.|++|+.+++|++|+..+++|++.+.++ .+++||+||+|+.+.... ..
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~ 264 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAM 264 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHH
Confidence 34444433 357888999999999999999999999998888887665432 368999999999876432 22
Q ss_pred hcCCCChHHHHhhccCceeeceEEEecCC--CCCCCCcCCcccc--eeccCCCCceEEEE--ecccc-ccCc----cCCC
Q 002928 276 LGNQATFEEKRVLGAFQYVYSDIFLHRDK--NFMPRNPAAWSAW--NFLGSTGGKVCLTY--WLNVV-QNIE----ETRL 344 (864)
Q Consensus 276 l~~~~~~~~~~~l~~~~~~~~~~~l~~d~--~~~p~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~-~~l~----~~~~ 344 (864)
++... ...+...+. .++.+.... ..+|......... .+.+...++.++.. ..... .... +.+.
T Consensus 265 ~~~~~-----~i~p~~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~ 338 (410)
T PRK12409 265 LGDRV-----NVYPVKGYS-ITVNLDDEASRAAAPWVSLLDDSAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLV 338 (410)
T ss_pred hCCCC-----ccccCCceE-EEeecCCccccccCCceeeeecCCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 22100 011111111 111111100 0112110001111 11111223332211 11110 0000 0011
Q ss_pred CeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccc
Q 002928 345 PFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 345 ~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
+.+.+++|.+...... .|....|... +..+.+.. .+.+|+|++.+|.|+|+ ..|...|+.+|+.|++..
T Consensus 339 ~~~~~~~P~l~~~~~~-~w~G~r~~t~----D~~PiiG~-~~~~~l~~~~G~~~~G~-~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 339 DWVRRNFPDVSTRRVV-PWAGLRPMMP----NMMPRVGR-GRRPGVFYNTGHGHLGW-TLSAATADLVAQVVAQKL 407 (410)
T ss_pred HHHHHhCCCCCccccc-eecccCCCCC----CCCCeeCC-CCCCCEEEecCCcccch-hhcccHHHHHHHHHcCCC
Confidence 2234567765544433 5764333211 11111212 12589999999999999 999999999999998765
No 81
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.59 E-value=5.7e-15 Score=138.06 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=98.4
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcccCCCC--CCCCccEEE
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIR-LYLCDYRQLP--KSNKYDRII 701 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~--~~~~fD~v~ 701 (864)
+.......|||||||+|..-.+.--.++++||++|.++.|-+.+.+.++++. +.++. |++++.++++ ++++||+|+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred hcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEE
Confidence 3333445789999999999988876689999999999999999999988874 44776 9999999999 899999999
Q ss_pred EchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 702 SCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 702 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+..+++.+ +++.+.|+++.|+|+|||++++.+.+..
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 99999999 8899999999999999999999776643
No 82
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=9.4e-15 Score=137.86 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=145.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
.+-...++..+.+.+..+|.|+|||.|..+..++++ +++.|+|+|.|++|++.|+++.. +++|..+|++++.+
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p 89 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKP 89 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCC
Confidence 344568888999989999999999999999999999 99999999999999999987742 79999999999998
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc----cCccchhhhccc---CCCCCCCH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH----RLSPGFIKEYIF---PGGCLPSL 766 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~i~---p~~~~~~~ 766 (864)
+.++|+++++-++++++ +..+.|..+...|.|||.+.++....-+...... .....|-..+-- -...++++
T Consensus 90 ~~~~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~ 167 (257)
T COG4106 90 EQPTDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSP 167 (257)
T ss_pred CCccchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCH
Confidence 88999999999999995 5699999999999999999997654433221111 111233332211 13568899
Q ss_pred HHHHHHHhcCCCcEEEEEEeccccH---HHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHh
Q 002928 767 NRITSAMTSSSRLCVEDLENIGIHY---YQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFK 834 (864)
Q Consensus 767 ~~~~~~l~~~~gf~v~~~~~~~~~y---~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~ 834 (864)
..+.+.|.. .+-+|.-++..=.|- ...+-+|.+.- .-++-+..+. ++...+.-..|.......|-
T Consensus 168 a~Yy~lLa~-~~~rvDiW~T~Y~h~l~~a~aIvdWvkgT-gLrP~L~~L~-e~~~~~FL~~Y~~~l~~aYP 235 (257)
T COG4106 168 AAYYELLAP-LACRVDIWHTTYYHQLPGADAIVDWVKGT-GLRPYLDRLD-EEERQRFLDRYLALLAEAYP 235 (257)
T ss_pred HHHHHHhCc-ccceeeeeeeeccccCCCccchhhheecc-ccceeccccC-HHHHHHHHHHHHHHHHHhCC
Confidence 999988876 566665555432221 22445554311 1111112221 23444444456666666653
No 83
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=3e-14 Score=131.51 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
.....+++.+.+.++.+|||+|||+|.++..++++ ++++|+++|+|+.+++.++++++..++. +++++..|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh
Confidence 44456778888888899999999999999999998 5689999999999999999999888775 7999999977532
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
..++||.|++.....+ ..++++++.++|||||.+++..+
T Consensus 85 ~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 3468999999775543 46899999999999999999654
No 84
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=3.7e-14 Score=138.63 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
++.+|||||||+|.++..++.. ++++|+|+|+|++|++.+++++++.+++ +++++++|+.+++.+++||+|+|.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999999876 5689999999999999999999888875 6999999999876567999999976 33
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+++.+++.+.++|+|||++++.
T Consensus 120 -----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 -----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3467889999999999999984
No 85
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.58 E-value=1.8e-15 Score=167.56 Aligned_cols=198 Identities=15% Similarity=0.089 Sum_probs=107.8
Q ss_pred cEEEecCC---hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHHHHHhhcCCCC
Q 002928 206 QWLTVRSR---SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPDALRMLGNQAT 281 (864)
Q Consensus 206 ~~~~~~gG---~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~ 281 (864)
..+.+.+| ...+++.|.+.++++|++|+.+++|++|..++++|+ |.|.+|+ +.||+||+|+.+.... ++.....
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~-l~~~~~~ 212 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ-LLPLLGL 212 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH-HHHTTTT
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee-eeecccc
Confidence 34456666 689999999999999999999999999999999997 9999995 9999999998776533 4432100
Q ss_pred hHHHHhhccCceeeceEEEecCCCCC-----CCCcCCcc-cceeccCCCCceEEEE-e----cc-ccccC----------
Q 002928 282 FEEKRVLGAFQYVYSDIFLHRDKNFM-----PRNPAAWS-AWNFLGSTGGKVCLTY-W----LN-VVQNI---------- 339 (864)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~l~~d~~~~-----p~~~~~~~-~~~~~~~~~~~~~~~~-~----~~-~~~~l---------- 339 (864)
.. +..+.....+.+....... +....... ...|.....+..++.. . .. .....
T Consensus 213 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (358)
T PF01266_consen 213 DL-----PLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGGVLIGTADGNYDPGPSPEDSSGEDPDVDEE 287 (358)
T ss_dssp SS-----TEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTEEEEEESECEEEESSSHHHHSHHHHHHHHH
T ss_pred cc-----cccccceEEEEEccCCcccccccccccccccccccceecccccccccccccccccccccccccccccccccHH
Confidence 00 1111111112222111100 00000000 0111111113333320 0 00 00000
Q ss_pred ccCCCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHH
Q 002928 340 EETRLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHG 415 (864)
Q Consensus 340 ~~~~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ 415 (864)
.+.+.+.+.++.|.+....+...|....|... +..+.+......+|+|+++++.|+|+ ..|..+|+.+|+.
T Consensus 288 ~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t~----d~~p~ig~~~~~~~l~~~~g~~~~G~-~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 288 IDELLERLARLLPGLGDAEVVRSWAGIRPFTP----DGRPIIGELPGSPNLYLAGGHGGHGF-TLAPGLAELLADL 358 (358)
T ss_dssp HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEET----TSECEEEEESSEEEEEEEECETTCHH-HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhhhccccccccceeeecc----CCCeeeeecCCCCCEEEEECCCchHH-HHHHHHHHHHhcC
Confidence 01122333445666555555556654333311 11122223344789999999999999 9999999999974
No 86
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.58 E-value=4.1e-14 Score=146.13 Aligned_cols=181 Identities=22% Similarity=0.386 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 002928 612 VAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691 (864)
Q Consensus 612 ~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (864)
++....++.+...+...++.+|||||||+|.++..+++. +++|+++|+++++++.+++++...+. ++++...|+.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 107 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEEL 107 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHh
Confidence 333344556666666678899999999999999999886 88999999999999999998877665 688889998877
Q ss_pred C--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc----cCCCCCCC
Q 002928 692 P--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI----FPGGCLPS 765 (864)
Q Consensus 692 ~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i----~p~~~~~~ 765 (864)
+ .+++||+|++..+++|+ .++..+++.+.++|+|||.+++..+......+........++.... .....+++
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIK 185 (233)
T ss_pred hhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCC
Confidence 5 45799999999999999 4678999999999999999998765422110000000000010000 01123567
Q ss_pred HHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHH
Q 002928 766 LNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRK 800 (864)
Q Consensus 766 ~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~ 800 (864)
..++.+.+.+ +||+++... +.+|.+....|..
T Consensus 186 ~~~~~~~l~~-~Gf~~v~~~--~~~~~~~~~~~~~ 217 (233)
T PRK05134 186 PSELAAWLRQ-AGLEVQDIT--GLHYNPLTNRWKL 217 (233)
T ss_pred HHHHHHHHHH-CCCeEeeee--eEEechhhcceee
Confidence 8888888886 999998764 5667788888876
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.58 E-value=2.1e-14 Score=151.65 Aligned_cols=161 Identities=25% Similarity=0.326 Sum_probs=112.1
Q ss_pred HHHHHHHcCC---CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCC
Q 002928 618 VSLLIQKARV---SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGL----QDHIRLYLCDYRQ 690 (864)
Q Consensus 618 ~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~ 690 (864)
++.+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++.+..+. ..++++...|+.+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 3444444432 35789999999999999999997 88999999999999999999876522 1368899999876
Q ss_pred CCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCC------CCCC
Q 002928 691 LPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPG------GCLP 764 (864)
Q Consensus 691 ~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~------~~~~ 764 (864)
+. ++||+|+|..+++|++++....+++.+.++ .++|. ++.. . +.... + .....+.+ .||+ .++.
T Consensus 209 l~--~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~-~-p~~~~--~-~~l~~~g~-~~~g~~~~~r~y~~ 278 (315)
T PLN02585 209 LS--GKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF-A-PKTLY--Y-DILKRIGE-LFPGPSKATRAYLH 278 (315)
T ss_pred cC--CCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe-C-CcchH--H-HHHHHHHh-hcCCCCcCceeeeC
Confidence 64 789999999999999876667778888764 55555 4422 1 21110 0 00011111 2333 2345
Q ss_pred CHHHHHHHHhcCCCcEEEEEEecccc
Q 002928 765 SLNRITSAMTSSSRLCVEDLENIGIH 790 (864)
Q Consensus 765 ~~~~~~~~l~~~~gf~v~~~~~~~~~ 790 (864)
+.+++.+.+++ +||++...+.....
T Consensus 279 s~eel~~lL~~-AGf~v~~~~~~~~~ 303 (315)
T PLN02585 279 AEADVERALKK-AGWKVARREMTATQ 303 (315)
T ss_pred CHHHHHHHHHH-CCCEEEEEEEeecc
Confidence 78888888876 99999887655443
No 88
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.57 E-value=5.7e-15 Score=130.54 Aligned_cols=95 Identities=25% Similarity=0.537 Sum_probs=83.4
Q ss_pred EEEEcCCchHHHHHHHHhc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEch-hh
Q 002928 633 VLEIGCGWGTLAIEIVKQT--G--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCE-MI 706 (864)
Q Consensus 633 vLDiGcG~G~~~~~la~~~--~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~-~~ 706 (864)
|||+|||+|..+..+++.. + .+++|+|+|++|++.++++....+. +++++++|+.+++ .+++||+|++.+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 3 7999999999999999999988766 8999999999988 677999999965 59
Q ss_pred hhhChhhHHHHHHHHHhccccCc
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHG 729 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG 729 (864)
+|+.++....+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99998899999999999999998
No 89
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=1.5e-13 Score=138.19 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=113.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCeEEE
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGL--------------QDHIRLY 684 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------------~~~v~~~ 684 (864)
...+..+.+.++.+|||+|||.|..+.+||++ |++|+|||+|+..++.+.+. .++ ..+|++.
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~ 102 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIY 102 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEE
Confidence 34444455567789999999999999999997 99999999999999987432 222 2479999
Q ss_pred EcccCCCC--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCC
Q 002928 685 LCDYRQLP--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGC 762 (864)
Q Consensus 685 ~~d~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~ 762 (864)
++|+.+++ ..+.||.|+...+++|++.+....+++.+.++|||||++++.+...+.... .. .| .
T Consensus 103 ~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----~g--------Pp--~ 168 (218)
T PRK13255 103 CGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----AG--------PP--F 168 (218)
T ss_pred ECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----CC--------CC--C
Confidence 99999886 236899999999999999999999999999999999986665544332210 00 11 2
Q ss_pred CCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 763 LPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 763 ~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
..+.+++.+.+. .+|+++.++..
T Consensus 169 ~~~~~el~~~~~--~~~~i~~~~~~ 191 (218)
T PRK13255 169 SVSDEEVEALYA--GCFEIELLERQ 191 (218)
T ss_pred CCCHHHHHHHhc--CCceEEEeeec
Confidence 457788877664 35888777654
No 90
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.56 E-value=1.5e-13 Score=153.62 Aligned_cols=251 Identities=16% Similarity=0.161 Sum_probs=139.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhC----CCeEEEEecCCCCCCcceeEe--eCCeeeccceeeccCCCchHHHHHHHHcCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVT--IDGVDLDLCFMVFNRVTYPNMMEFFESLGVD 74 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~----G~~V~vlEa~~~~GG~~~s~~--~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~ 74 (864)
++|+|||||+||||||++|++. |.+|+|||+++.+||++.+.. .+|+.++.|... ...+..+.++++.+.-.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~ipsl 100 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSIPSL 100 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhcccc
Confidence 5799999999999999999995 689999999999999998755 578999888653 45788889999886321
Q ss_pred ccc--ccc-eeeEEecCCCc---eeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccH
Q 002928 75 MEI--SDM-SFSVSLDKGQG---CEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETL 148 (864)
Q Consensus 75 ~~~--~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (864)
..+ ... ++......... ..+....+. .+....--+.. +...++ +..........++.++
T Consensus 101 e~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~--~~d~~~~~L~~---k~r~~L----------l~l~l~~e~~Ld~~tI 165 (576)
T PRK13977 101 EDPGASVLDEFYWFNKDDPNYSKARLIHKRGE--ILDTDKFGLSK---KDRKEL----------LKLLLTPEEKLDDKTI 165 (576)
T ss_pred CCCCcccccceeeeecCCcccceeeEEcCCCC--EEECcCCCCCH---HHHHHH----------HHHhccCHHHhCCcCH
Confidence 111 000 00000000000 000000000 00000000110 001111 1111112222367899
Q ss_pred HHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhc--CCCccCCCCcE-EEecCChHHHHHHHHHHH
Q 002928 149 GQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNH--HALQIFGRPQW-LTVRSRSRSYVDKVIELL 225 (864)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~gG~~~l~~~La~~~ 225 (864)
.+|++...+...+ -.++.++++ -. .. .|+..+.+++... ++......... +....-+.++++.|.+.+
T Consensus 166 ~d~f~~~Ff~t~F-w~~w~t~Fa----F~-~w---hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~L 236 (576)
T PRK13977 166 EDWFSPEFFETNF-WYYWRTMFA----FE-KW---HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYL 236 (576)
T ss_pred HHHHhhcCchhHH-HHHHHHHHC----Cc-hh---hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHH
Confidence 9999998665433 233444321 11 22 2555555555332 11111111111 122233579999999999
Q ss_pred hhcCceEEeCcceEEEEEe--C--CeE-EEEEC-CCc-----EEecCEEEEccChHHHHHhhc
Q 002928 226 ESLGCQIKTGCEVRSVLQY--G--EGR-IEIRG-DDF-----QRVYDGCIMAVHAPDALRMLG 277 (864)
Q Consensus 226 ~~~G~~I~~~~~V~~I~~~--~--~~~-~V~~~-~G~-----~~~ad~VV~A~~~~~~~~ll~ 277 (864)
+++|++|++|++|++|..+ + +++ .|... +|+ ....|.||+|+...+...-++
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G 299 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYG 299 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccC
Confidence 9999999999999999875 3 223 33332 232 245889999987665433333
No 91
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.56 E-value=1.9e-13 Score=153.95 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEEECCCcEEecCEEEEccChHHH--HHhhcCCCChHHHHhhcc
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEIRGDDFQRVYDGCIMAVHAPDA--LRMLGNQATFEEKRVLGA 290 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~~~~G~~~~ad~VV~A~~~~~~--~~ll~~~~~~~~~~~l~~ 290 (864)
..++..|++.+.++|++++.+++|++|+.. ++++ .|+|.+| ++.+++||+|+..... .++++... +.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~--------~~ 253 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRL--------PI 253 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCC--------Cc
Confidence 367788899999999999999999999764 4554 5888888 7999999999776643 22222111 11
Q ss_pred CceeeceEEEecCCCCCCCCcCCcc-cceecc-CCCCceEEEEeccccccC--------ccCCCCeEEEcCCCCCCccee
Q 002928 291 FQYVYSDIFLHRDKNFMPRNPAAWS-AWNFLG-STGGKVCLTYWLNVVQNI--------EETRLPFLVTLNPDHTPEHTL 360 (864)
Q Consensus 291 ~~~~~~~~~l~~d~~~~p~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~l~p~~~~~~~~ 360 (864)
.++....++.......++. ..... ...|.+ .++++.++.......... .+.+.+.+.+++|.+....+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 332 (407)
T TIGR01373 254 ESHPLQALVSEPLKPIIDT-VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRML 332 (407)
T ss_pred CcccceEEEecCCCCCcCC-eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeE
Confidence 1111111111100111111 00000 112332 223444443221110000 011122234467766555566
Q ss_pred eeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccccc
Q 002928 361 FKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSC 421 (864)
Q Consensus 361 ~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~ 421 (864)
..|....|... +..+.+... +.+|+|++.+++|+|+ ..|...|+.+|+.|++...
T Consensus 333 ~~w~G~~~~t~----D~~PiIg~~-~~~gl~~a~G~~g~G~-~~ap~~G~~la~li~~~~~ 387 (407)
T TIGR01373 333 RSWGGIVDVTP----DGSPIIGKT-PLPNLYLNCGWGTGGF-KATPASGTVFAHTLARGEP 387 (407)
T ss_pred EEeccccccCC----CCCceeCCC-CCCCeEEEeccCCcch-hhchHHHHHHHHHHhCCCC
Confidence 77865444211 122222232 2579999999999999 9999999999999987653
No 92
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.55 E-value=2.5e-14 Score=160.27 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCce
Q 002928 215 RSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQY 293 (864)
Q Consensus 215 ~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (864)
..++++|++.+.++| ..+..+++|..++..++.+.|.|.+|+ ++||+||+|+.++... +.+. .........+...+
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~-l~~~-~~~~~~~~~p~~~~ 232 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGE-LAAT-LGELPLPLRPVRGQ 232 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHH-HHHh-cCCCcCccccccce
Confidence 589999999999999 577779999999874355789999995 9999999999887543 2221 00000001111111
Q ss_pred eeceEEEecCCCCCCC-----CcCCcccceeccC-CCCceEEEEecccc---c-c---Cc---cCCCCeEEEcCCCCCCc
Q 002928 294 VYSDIFLHRDKNFMPR-----NPAAWSAWNFLGS-TGGKVCLTYWLNVV---Q-N---IE---ETRLPFLVTLNPDHTPE 357 (864)
Q Consensus 294 ~~~~~~l~~d~~~~p~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~---l~---~~~~~~~~~l~p~~~~~ 357 (864)
. +.+.......+. .........|... .+++..+....... . . .. ..+.+.+..+.|.+...
T Consensus 233 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 309 (387)
T COG0665 233 A---LTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADA 309 (387)
T ss_pred E---EEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCcccccc
Confidence 1 111111111110 0011111233322 23444442221111 1 0 00 01222334566666555
Q ss_pred ceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccccccccc
Q 002928 358 HTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCAILA 425 (864)
Q Consensus 358 ~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~~~~ 425 (864)
.+...|....|...+ +..|.+....+.+|+|++.+|+++|+ ..+...|+.+|+.|+|...+.+.
T Consensus 310 ~~~~~w~g~~~~t~p---d~~P~iG~~~~~~~l~~a~G~~~~G~-~~~p~~g~~lA~li~g~~~~~~~ 373 (387)
T COG0665 310 GIEAAWAGLRPPTTP---DGLPVIGRAAPLPNLYVATGHGGHGF-TLAPALGRLLADLILGGEPELDL 373 (387)
T ss_pred ccceeeeccccCCCC---CCCceeCCCCCCCCEEEEecCCCcCh-hhccHHHHHHHHHHcCCCCCCCc
Confidence 555677765553321 22223332122789999999999999 99999999999999997755443
No 93
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.55 E-value=1.1e-13 Score=154.32 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCcee
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYV 294 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (864)
..++..+.+.+.+.|++|+++++|++|+.+++++.|++.+| ++.||+||+|++.... .+++. .. ++..+..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~-~~------~~i~~~~ 219 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK-DLLPP-LE------LPLTPVR 219 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh-hhccc-cc------CCceEEE
Confidence 46788888888888999999999999999888899999888 7999999999987643 23331 00 0000111
Q ss_pred eceEEEecCCCCC-CCCcCCc-----ccc-eecc-CCCCc-eEEEEecc-----ccc---------cCccCCCCeEEEcC
Q 002928 295 YSDIFLHRDKNFM-PRNPAAW-----SAW-NFLG-STGGK-VCLTYWLN-----VVQ---------NIEETRLPFLVTLN 351 (864)
Q Consensus 295 ~~~~~l~~d~~~~-p~~~~~~-----~~~-~~~~-~~~~~-~~~~~~~~-----~~~---------~l~~~~~~~~~~l~ 351 (864)
.....+....... +.....+ +.. .|.. ..+++ ..+..... ... ...+.+.+.+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (376)
T PRK11259 220 QVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYL 299 (376)
T ss_pred EEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHC
Confidence 0111111111100 0000000 001 1111 11233 33322111 000 00111222234466
Q ss_pred CCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 352 PDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 352 p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
|.... ....|....| +++ +..+.+......+|+|++.+|+|+|+ ..+...|+.+|+.|++..+.
T Consensus 300 P~~~~--~~~~~~g~~~-~t~---D~~P~ig~~~~~~gl~~~~G~~g~G~-~~ap~~g~~la~li~~~~~~ 363 (376)
T PRK11259 300 PGVGP--CLRGAACTYT-NTP---DEHFIIDTLPGHPNVLVASGCSGHGF-KFASVLGEILADLAQDGTSD 363 (376)
T ss_pred CCCCc--cccceEEecc-cCC---CCCceeecCCCCCCEEEEecccchhh-hccHHHHHHHHHHHhcCCCC
Confidence 65443 4445554333 111 22333444445789999999999999 99999999999999986643
No 94
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.55 E-value=1.9e-13 Score=152.63 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+++.|.+.+++.|++++.+++|++|+.+++++.|.+.+| ++.||.||+|+....
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 47888899988889999999999999998888888888777 799999999987653
No 95
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=1.6e-13 Score=136.21 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
...+++.+.+.++.+|||||||+|.++..+++. ++++|+++|+|+++++.|+++++..++. +++++.+|+.. +..++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~ 97 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGK 97 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcC
Confidence 345667788888999999999999999999987 5689999999999999999999888775 79999999753 22368
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
||+|++....++ +..+++++.++|+|||++++..+
T Consensus 98 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 98 ADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 999999866543 46789999999999999998553
No 96
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.54 E-value=8.5e-14 Score=138.93 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 002928 609 DLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687 (864)
Q Consensus 609 ~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (864)
.+..+....+...+.. +.++.+|||||||+|.++..+++. ++.+++|+|+|+++++.|+++.. ++++.++|
T Consensus 25 ~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d 96 (204)
T TIGR03587 25 SLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGS 96 (204)
T ss_pred HHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEee
Confidence 3444444444555444 346789999999999999999987 67899999999999999987642 57888999
Q ss_pred cCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 688 YRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 688 ~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+.+ + ++++||+|++..+++|++++++.++++++.+++ ++.+++.++..+.
T Consensus 97 ~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 97 LFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred ccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 887 5 678999999999999998778999999999998 5688887765443
No 97
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=8.4e-14 Score=139.84 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
.....+++.+.++++++|||||||+|..+..+++.. +++|+++|+++++++.|+++++..++.++++++.+|..+..
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 345678888888999999999999999999999863 47999999999999999999998888778999999987754
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..++||+|++...++|++ +++.+.|||||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 557899999999888874 35788999999998843
No 98
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=4.4e-14 Score=134.06 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=93.2
Q ss_pred HHHHHHHH-HcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 616 RKVSLLIQ-KARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 616 ~~~~~~~~-~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
+|.+.++. .++-..-.++||+|||.|.++..||.+ ..+++++|+|+..++.|++++... .+|++++.|+.+..++
T Consensus 29 ~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~ 104 (201)
T PF05401_consen 29 RKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPE 104 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---S
T ss_pred HHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCC
Confidence 45455554 567666789999999999999999998 568999999999999999998743 3899999999887778
Q ss_pred CCccEEEEchhhhhhCh-hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 695 NKYDRIISCEMIEAVGH-DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++||+|+..++++++.+ +++..+++++...|+|||.+++...
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999999999999975 5789999999999999999999654
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=1.2e-13 Score=143.72 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCC---CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 002928 613 AQMRKVSLLIQKARV---SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY 688 (864)
Q Consensus 613 aq~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (864)
.|......+++.+.. ..+.+|||||||+|.++..+++. +..+++++|+|+++++.++++.. ++++++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 445555556555542 34579999999999999999988 56789999999999999988753 3789999999
Q ss_pred CCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHH
Q 002928 689 RQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLN 767 (864)
Q Consensus 689 ~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (864)
.+.+ ++++||+|++..+++|+ .++..+++++.++|||||.+++.++...... ........ .+..+++..
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~ 159 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLSLD 159 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCCHH
Confidence 9888 67899999999999999 5689999999999999999999765433211 00111111 234556778
Q ss_pred HHHHHHhcCCCcEEEEEE
Q 002928 768 RITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~ 785 (864)
++.+.+.+ + |....++
T Consensus 160 ~~~~~l~~-~-f~~~~~~ 175 (240)
T TIGR02072 160 ELKALLKN-S-FELLTLE 175 (240)
T ss_pred HHHHHHHH-h-cCCcEEE
Confidence 88777775 4 7655543
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.52 E-value=1e-13 Score=126.91 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcC---CCCC-CeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 002928 612 VAQMRKVSLLIQKAR---VSKG-HEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC 686 (864)
Q Consensus 612 ~aq~~~~~~~~~~l~---~~~~-~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (864)
+|+++.++.+.+... +... .+|||+|||.|.+...|+++ .....+|+|.|+..++.|+..++..++++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 467788888887765 3333 49999999999999999998 445699999999999999999999999988999999
Q ss_pred ccCCCC-CCCCccEEEEchhhhhhC------hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 687 DYRQLP-KSNKYDRIISCEMIEAVG------HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 687 d~~~~~-~~~~fD~v~s~~~~~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+.+-. ..++||+|.--+.+..++ ...+.-|+..+.++|+|||+++|..++
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 998755 568899999877666552 123467899999999999999996654
No 101
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.52 E-value=3.5e-13 Score=160.29 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=54.7
Q ss_pred cEEEecCC---hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 206 QWLTVRSR---SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 206 ~~~~~~gG---~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+++.+| ...++++|.+.+.+ |++|+.+++|++|+..+++|.|.+.+|..++||.||+|+....
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34455554 35899999999988 9999999999999988889999998886678999999988764
No 102
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.52 E-value=3.1e-13 Score=133.16 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=107.9
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRI 700 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v 700 (864)
+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++++..+. +++++.+|+.+.. .++||.|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~V 86 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVI 86 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEE
Confidence 344444556789999999999999999997 55999999999999999999987775 6899999987654 3589999
Q ss_pred EEchhhhhhChh-------------------hHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCC
Q 002928 701 ISCEMIEAVGHD-------------------YMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGG 761 (864)
Q Consensus 701 ~s~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 761 (864)
+++..+++.++. ....+++++.++|||||++++......
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887665321 146789999999999999998653321
Q ss_pred CCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 762 CLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 762 ~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
...++++.+.+ .||.++.+..-+
T Consensus 145 ---~~~~~~~~l~~-~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ---GEPDTFDKLDE-RGFRYEIVAERG 167 (179)
T ss_pred ---ChHHHHHHHHh-CCCeEEEEEEee
Confidence 13455566665 799988877654
No 103
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.52 E-value=2.6e-14 Score=114.74 Aligned_cols=67 Identities=46% Similarity=0.785 Sum_probs=60.4
Q ss_pred EEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccC-CCchHHHHHHHHc
Q 002928 5 VIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR-VTYPNMMEFFESL 71 (864)
Q Consensus 5 IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~l 71 (864)
|||||+|||+||+.|+++|++|+|+|+++++||++.+...+|..+|.|++.|+. ..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999975 3578888988874
No 104
>PRK06922 hypothetical protein; Provisional
Probab=99.52 E-value=7.7e-14 Score=156.15 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=96.1
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEE
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRI 700 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v 700 (864)
++..++.+|||||||+|..+..+++. ++.+|+|+|+|+.|++.|+++....+. +++++++|+.+++ ++++||+|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEE
Confidence 34446889999999999999999887 788999999999999999998765543 7889999998876 46789999
Q ss_pred EEchhhhhh-----------ChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 701 ISCEMIEAV-----------GHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 701 ~s~~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+++.++||+ +.+++..+++++.++|||||++++.+...+
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999999875 235788999999999999999999875443
No 105
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=2.9e-15 Score=132.04 Aligned_cols=95 Identities=24% Similarity=0.462 Sum_probs=66.7
Q ss_pred EEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEchhhhhh
Q 002928 634 LEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCEMIEAV 709 (864)
Q Consensus 634 LDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~~~~~~ 709 (864)
||||||+|.++..++++ +..+++|+|+|+.|++.|++++.+.+.. +......+..+.. ..++||+|++.++++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999998 7889999999999999999999887643 4444444444433 33599999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEE
Q 002928 710 GHDYMEEFFGCCESLLAEHGLL 731 (864)
Q Consensus 710 ~~~~~~~~l~~~~~~LkpgG~l 731 (864)
+++..++++++++|||||+|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 77899999999999999986
No 106
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.51 E-value=4.4e-13 Score=134.16 Aligned_cols=111 Identities=21% Similarity=0.381 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
..+.++.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.++++++..++.++++++.+|+.+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 4467888999999999999999999999875 357999999999999999999998887678999999987643 346
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+||+|++... ..++..+++++.++|||||++++..
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 8999998542 2456889999999999999999844
No 107
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=1.2e-13 Score=140.07 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++++.++ ++++++++|+.+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc
Confidence 455688888899999999999999999999999873 35799999999999999999999988 48999999987754
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
...+||+|++.....+++ +.+.+.|||||++++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 456899999987666553 45788999999999854
No 108
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=2.4e-13 Score=139.55 Aligned_cols=155 Identities=26% Similarity=0.411 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEMI 706 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~~ 706 (864)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999999886 778999999999999999998876653 6899999988776 23789999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCC----CCCCCHHHHHHHHhcCCCcEEE
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPG----GCLPSLNRITSAMTSSSRLCVE 782 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~----~~~~~~~~~~~~l~~~~gf~v~ 782 (864)
+|+ .++..+++++.++|+|||.+++.+................++.....++ ..+.+..++.+.+.+ +||+++
T Consensus 123 ~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~G~~i~ 199 (224)
T TIGR01983 123 EHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES-AGLRVK 199 (224)
T ss_pred HhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH-cCCeee
Confidence 999 5678999999999999999998765322110000000001111111111 134567788888876 899999
Q ss_pred EEEecc
Q 002928 783 DLENIG 788 (864)
Q Consensus 783 ~~~~~~ 788 (864)
++....
T Consensus 200 ~~~~~~ 205 (224)
T TIGR01983 200 DVKGLV 205 (224)
T ss_pred eeeeEE
Confidence 887544
No 109
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=4.8e-13 Score=130.15 Aligned_cols=128 Identities=23% Similarity=0.438 Sum_probs=98.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 002928 600 CAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQ 678 (864)
Q Consensus 600 ~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~ 678 (864)
.++|.. ..++.+..-. ++.+...++.+|||+|||+|.++..++++ +..+|+++|+|+.+++.++++++.++++
T Consensus 8 ~gvFs~--~~~d~~t~lL----~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 8 PGVFSP--PRLDAGTRLL----LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp TTSTTT--TSHHHHHHHH----HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred CCeeCC--CCCCHHHHHH----HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 456643 2344444433 33333337789999999999999999998 5568999999999999999999999987
Q ss_pred CCeEEEEcccCCCCCCCCccEEEEchhhhhhCh---hhHHHHHHHHHhccccCcEEEEE
Q 002928 679 DHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGH---DYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 679 ~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+ ++++..|..+..++++||+|+|+..++.-.+ .-..++++++.++|||||.+++.
T Consensus 82 ~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 82 N-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp T-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 5 9999999866555689999999987655432 24688999999999999999873
No 110
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=1.8e-13 Score=142.42 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=100.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchH----HHHHHHHh-c-----CCEEEEEeCCHHHHHHHHHHH
Q 002928 603 FKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYAEMKV 672 (864)
Q Consensus 603 ~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~gid~s~~~~~~a~~~~ 672 (864)
|-.....++.-+...+..+++.....++.+|+|+|||+|. +++.+++. + +.+|+|+|+|++|++.|++.+
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 3333444555444444555554444566899999999996 56666664 2 468999999999999999853
Q ss_pred H----HcC----------------------CCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhcc
Q 002928 673 K----EAG----------------------LQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLL 725 (864)
Q Consensus 673 ~----~~~----------------------l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~L 725 (864)
- -.+ +..+|+|.+.|+.+.+ ++++||+|+|.++++|+++++..+++++++++|
T Consensus 153 y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L 232 (264)
T smart00138 153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL 232 (264)
T ss_pred CCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh
Confidence 1 011 2247999999999887 578999999999999998878889999999999
Q ss_pred ccCcEEEEE
Q 002928 726 AEHGLLLLQ 734 (864)
Q Consensus 726 kpgG~l~i~ 734 (864)
+|||.+++.
T Consensus 233 ~pGG~L~lg 241 (264)
T smart00138 233 KPGGYLFLG 241 (264)
T ss_pred CCCeEEEEE
Confidence 999999984
No 111
>PRK06202 hypothetical protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=140.43 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=108.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRI 700 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v 700 (864)
..++.+|||||||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++.+.|..+++ .+++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356789999999999999888753 3469999999999999999876433 4677777776666 56799999
Q ss_pred EEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC-ccchh-hhcccCC-----CCCCCHHHHHHHH
Q 002928 701 ISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL-SPGFI-KEYIFPG-----GCLPSLNRITSAM 773 (864)
Q Consensus 701 ~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~-~~~i~p~-----~~~~~~~~~~~~l 773 (864)
+++.++||+++++...+++++.++++ |.+++.++..+...+..+.. ...+. ..++-.+ ...++.+++.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999987667899999999998 67777676654322111100 00000 0011011 1356888888777
Q ss_pred hcCCCcEEEEEEecc
Q 002928 774 TSSSRLCVEDLENIG 788 (864)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (864)
.+ ||++.....++
T Consensus 212 ~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 212 PQ--GWRVERQWPFR 224 (232)
T ss_pred hC--CCeEEecccee
Confidence 64 99988765543
No 112
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=3.5e-13 Score=135.88 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
-.....+++.+.++++++|||||||+|.++..+++.. +++|+++|+++++++.|+++++..++. +++++++|..+..
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence 4566788889999999999999999999999999873 479999999999999999999988874 8999999987654
Q ss_pred -CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 693 -KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
..++||+|++...+++++ +.+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 567899999987766552 3466789999999884
No 113
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=5.9e-13 Score=138.15 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=111.8
Q ss_pred hHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHH
Q 002928 585 NELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQ 664 (864)
Q Consensus 585 ~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~ 664 (864)
++.+...+++.|.+.++..... ...++.+... ..++.+|||+|||+|.+++.+++....+|+|+|+|+.+
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt--------~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~ 154 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTT--------RLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHH--------HHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 4445577889998887765321 1112222221 45789999999999999998877633359999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccc
Q 002928 665 LKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYD 744 (864)
Q Consensus 665 ~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 744 (864)
++.|+++++.+++.+++.+..+| .+||+|+++...+. ...+++++.++|||||.++++.+...
T Consensus 155 l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~~-----~~~l~~~~~~~LkpgG~lilsgi~~~----- 217 (250)
T PRK00517 155 VEAARENAELNGVELNVYLPQGD-------LKADVIVANILANP-----LLELAPDLARLLKPGGRLILSGILEE----- 217 (250)
T ss_pred HHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHHH-----HHHHHHHHHHhcCCCcEEEEEECcHh-----
Confidence 99999999988875555554433 27999999754433 46789999999999999999754321
Q ss_pred cccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 745 EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 745 ~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
...++.+.+.+ .||++......+
T Consensus 218 --------------------~~~~v~~~l~~-~Gf~~~~~~~~~ 240 (250)
T PRK00517 218 --------------------QADEVLEAYEE-AGFTLDEVLERG 240 (250)
T ss_pred --------------------hHHHHHHHHHH-CCCEEEEEEEeC
Confidence 23455666665 899988766543
No 114
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=7.6e-13 Score=142.66 Aligned_cols=131 Identities=13% Similarity=0.234 Sum_probs=104.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002928 599 SCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (864)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (864)
..++|....-+... +.+++.++...+.+|||+|||+|.+++.++++ ++.+|+++|+|+.+++.|+++++.++.
T Consensus 204 ~~gVFs~~~LD~Gt------rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcChHH------HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 46888766544443 35677777665679999999999999999988 778999999999999999999987764
Q ss_pred C--CCeEEEEcccCCCCCCCCccEEEEchhhhhh---ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 678 Q--DHIRLYLCDYRQLPKSNKYDRIISCEMIEAV---GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 678 ~--~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. .++++...|..+...+++||+|+|+..++.. .++...++|++++++|||||.+++..
T Consensus 278 ~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3789999997543334689999999877643 33345789999999999999999963
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.47 E-value=2.1e-12 Score=121.79 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
+.-...+.+|.++++++++|||||+|..++.++.. +.++|+++|-+++.++..++++++.|. +|++++.+|+-+.- .
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 34456788999999999999999999999999955 789999999999999999999999996 59999999987654 2
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
..+||+|+..+. . +.+.+++.+...|||||++++..++.
T Consensus 100 ~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 100 LPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 237999999876 3 45899999999999999999977653
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=3.9e-13 Score=153.87 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ--LP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~- 692 (864)
.....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.+++.. +..++++++++|+.+ ++
T Consensus 24 ~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 24 EERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC
Confidence 33456777777777889999999999999999997 679999999999999876543 223489999999864 44
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
++++||+|++..+++|++++....+++++.++|||||++++.+.+.
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 5679999999999999987778999999999999999999987653
No 117
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.2e-12 Score=132.11 Aligned_cols=143 Identities=16% Similarity=0.150 Sum_probs=101.8
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCc
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL----PKSNKY 697 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~~f 697 (864)
+.++++++.+|||+|||+|.++..+++.. ..+|+|+|+|++|++.+.++++.. .+|.++.+|+.+. +..++|
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC
Confidence 35888999999999999999999999973 469999999999999888776643 3799999998752 123579
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
|+|++.... +.....+++++.++|||||++++.....+.+ ...... ....+..+.+++ +
T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d----~~~~~~------------~~~~~~~~~l~~-a 201 (226)
T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSID----VTKDPK------------EIFKEEIRKLEE-G 201 (226)
T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccccc----CcCCHH------------HHHHHHHHHHHH-c
Confidence 999964221 1123456899999999999999953221100 000000 011334466665 8
Q ss_pred CcEEEEEEeccc
Q 002928 778 RLCVEDLENIGI 789 (864)
Q Consensus 778 gf~v~~~~~~~~ 789 (864)
||+++..+++++
T Consensus 202 GF~~i~~~~l~p 213 (226)
T PRK04266 202 GFEILEVVDLEP 213 (226)
T ss_pred CCeEEEEEcCCC
Confidence 999999988753
No 118
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.46 E-value=1.7e-12 Score=137.48 Aligned_cols=133 Identities=21% Similarity=0.332 Sum_probs=102.6
Q ss_pred HHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHH
Q 002928 588 FSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKY 667 (864)
Q Consensus 588 ~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~ 667 (864)
....+++.|.+.++..+. .+....+++.+ ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.
T Consensus 128 ~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred EEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 346688888887765432 12222334443 34789999999999999999887644589999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 668 AEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 668 a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|++++..+++.+++.+...|.... .+++||+|+++...++ ...++.++.++|||||.+++..+
T Consensus 198 a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 198 ARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999988887788887774333 3568999999876544 36789999999999999999654
No 119
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=6e-13 Score=132.80 Aligned_cols=114 Identities=24% Similarity=0.321 Sum_probs=98.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~ 695 (864)
.+..........+|||+|||+|.+++.+|++ ..++|++||+++++.+.|++.++.+++.++|+++++|+.++. ...
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 3445555666889999999999999999999 669999999999999999999999999999999999999886 345
Q ss_pred CccEEEEchhhhh----------------hChhhHHHHHHHHHhccccCcEEEE
Q 002928 696 KYDRIISCEMIEA----------------VGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 696 ~fD~v~s~~~~~~----------------~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
+||+|+|+-.+.- ...-+++.+++.+.++|||||.+.+
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 7999999865533 2223578999999999999999998
No 120
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=4e-12 Score=129.78 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=107.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+..++..+.++++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ +++++++|+.+..++++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCe
Confidence 445566667788999999999999999999986324999999999999999999887776 689999998765455789
Q ss_pred cEEEEchhhhhhC-------------------hhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc
Q 002928 698 DRIISCEMIEAVG-------------------HDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF 758 (864)
Q Consensus 698 D~v~s~~~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (864)
|+|+++..+.... ...+..+++++.++|||||++++......
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------------------- 163 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------------------- 163 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------------------
Confidence 9999985432211 11256788999999999999997432211
Q ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEEEeccccH
Q 002928 759 PGGCLPSLNRITSAMTSSSRLCVEDLENIGIHY 791 (864)
Q Consensus 759 p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y 791 (864)
...++++.+.+ .||.+.........+
T Consensus 164 ------~~~~~~~~l~~-~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 164 ------GVERTLTRLSE-AGLDAEVVASQWIPF 189 (223)
T ss_pred ------CHHHHHHHHHH-CCCCeEEEEeeccCc
Confidence 13345555664 788877665544333
No 121
>PLN03075 nicotianamine synthase; Provisional
Probab=99.44 E-value=8.2e-13 Score=136.13 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=94.5
Q ss_pred HHHcCCCCCCeEEEEcCCchHH-HHHHHH-h-cCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcccCCCC-CCCC
Q 002928 622 IQKARVSKGHEVLEIGCGWGTL-AIEIVK-Q-TGCKYTGITLSEEQLKYAEMKVKE-AGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~-~~~la~-~-~~~~v~gid~s~~~~~~a~~~~~~-~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
+..+...++.+|+|||||.|.+ ++.+++ . ++++++|+|+++++++.|++.++. .++.++|+|..+|+.+.. ..+.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3344344778999999997755 344443 3 788999999999999999999964 788889999999998876 4578
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
||+|++. +++++..+++.++++++.+.|+|||.+++..
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999 8888866789999999999999999999954
No 122
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-12 Score=126.39 Aligned_cols=110 Identities=25% Similarity=0.309 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LPKS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 694 (864)
.++..|++.+.++++++|||||||+|+.+..+|+. ..+|+.+|..++..+.|+++++..|+. ||.++++|... ++..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC
Confidence 56679999999999999999999999999999998 559999999999999999999999997 69999999644 5667
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++||+|+.......+|+. +.+.|||||++++-.
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEE
Confidence 899999999998888643 667799999999843
No 123
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.44 E-value=3.7e-12 Score=133.34 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 212 SRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 212 gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
...+.+++.|.+++++.|++|+++++|.+|+.++.+..|.|.+|+++.||.+|+|+..-
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 66789999999999999999999999999999988899999999889999999998743
No 124
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.44 E-value=2.8e-12 Score=121.84 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=111.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC--CCCCccEEEEc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP--KSNKYDRIISC 703 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--~~~~fD~v~s~ 703 (864)
++||.+|||+|||.|.+..+|.+..+++..|+|++++.+..+.++ .+.++++|+.+ ++ ++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999999998899999999999998888765 57899999865 33 78999999999
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcc-----------cccccCccchhhhcccCCCCCCCHHHHHHH
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQC-----------YDEHRLSPGFIKEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (864)
.+++++ .++..+++++.|+ |...+++.++..... +..-.-...| |=-|+-++.|..++.+.
T Consensus 83 qtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W---YdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 83 QTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW---YDTPNIHLCTIKDFEDL 154 (193)
T ss_pred hHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc---cCCCCcccccHHHHHHH
Confidence 999999 7889999998766 556666544322110 0000001122 22367778899999766
Q ss_pred HhcCCCcEEEEEEeccccH
Q 002928 773 MTSSSRLCVEDLENIGIHY 791 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~~~y 791 (864)
.. +.|+++++...+..+.
T Consensus 155 c~-~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 155 CR-ELGIRIEERVFLDGGR 172 (193)
T ss_pred HH-HCCCEEEEEEEEcCCC
Confidence 55 4899999877765543
No 125
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.43 E-value=5.1e-13 Score=133.74 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC---CCCCccEEEEc
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY-RQLP---KSNKYDRIISC 703 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~---~~~~fD~v~s~ 703 (864)
++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|++++...++ .+++++++|+ ..++ ++++||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999987 678999999999999999999988887 4899999998 6554 45789999997
Q ss_pred hhhhhh------ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAV------GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
....+. .......+++++.++|||||.+++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 654322 11124789999999999999999854
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.3e-12 Score=129.47 Aligned_cols=158 Identities=22% Similarity=0.313 Sum_probs=115.0
Q ss_pred HhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHH
Q 002928 589 SLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKY 667 (864)
Q Consensus 589 ~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~ 667 (864)
...+|+.|.+..|.-+... +--..++++. ++|.+|||+|||+|.+++.+++. |+ +|+|+|++|..++.
T Consensus 132 ~i~lDPGlAFGTG~HpTT~---------lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~a 200 (300)
T COG2264 132 NIELDPGLAFGTGTHPTTS---------LCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEA 200 (300)
T ss_pred EEEEccccccCCCCChhHH---------HHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHH
Confidence 3557888887766654422 1122233332 48899999999999999999997 65 59999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccccc
Q 002928 668 AEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR 747 (864)
Q Consensus 668 a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 747 (864)
|+++++.++++..++....+....+..++||+|+++-.-+ + +..+...+.++|||||+++++-+....
T Consensus 201 a~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~-v----l~~La~~~~~~lkpgg~lIlSGIl~~q------- 268 (300)
T COG2264 201 ARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE-V----LVELAPDIKRLLKPGGRLILSGILEDQ------- 268 (300)
T ss_pred HHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-H----HHHHHHHHHHHcCCCceEEEEeehHhH-------
Confidence 9999999988643444444444444557999999986333 2 478889999999999999997653211
Q ss_pred CccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 748 LSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 748 ~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.+.+++.+ .||+++.+....
T Consensus 269 ------------------~~~V~~a~~~-~gf~v~~~~~~~ 290 (300)
T COG2264 269 ------------------AESVAEAYEQ-AGFEVVEVLERE 290 (300)
T ss_pred ------------------HHHHHHHHHh-CCCeEeEEEecC
Confidence 3455666664 799998876543
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.40 E-value=1.9e-12 Score=129.19 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=104.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC--CCC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP--KSN 695 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--~~~ 695 (864)
+.+.+.+ +++.+|||||||+|.++..+++..+++++|+|+|+++++.++++ +++++++|+.+ ++ +++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCC
Confidence 3444444 46789999999999999999877678899999999999988642 57888999876 43 467
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcc--cccccC-ccchhhh--cc---cCCCCCCCHH
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQC--YDEHRL-SPGFIKE--YI---FPGGCLPSLN 767 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~-~~~~~~~--~i---~p~~~~~~~~ 767 (864)
+||+|+++.+++|+ .++..+++++.+.+++ +++......... ...+.. ....... +. -|...+++..
T Consensus 75 sfD~Vi~~~~l~~~--~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 75 SFDYVILSQTLQAT--RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred CcCEEEEhhHhHcC--cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 89999999999999 5688999998887654 344322111000 000000 0000110 00 1234577899
Q ss_pred HHHHHHhcCCCcEEEEEEec
Q 002928 768 RITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~~~ 787 (864)
++.+.+++ +||++.+...+
T Consensus 150 ~~~~ll~~-~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGE-LNLRILDRAAF 168 (194)
T ss_pred HHHHHHHH-CCCEEEEEEEe
Confidence 99888776 99999987665
No 128
>PRK14968 putative methyltransferase; Provisional
Probab=99.39 E-value=1.1e-11 Score=123.62 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=92.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCCCCCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDH-IRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~d~~~~~~~~~fD 698 (864)
.+++.+...++.+|||+|||+|.++..++++ +.+|+++|+|+++++.+++++...++.++ +.++++|..+...+.+||
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 92 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFD 92 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCce
Confidence 3444444578889999999999999999998 89999999999999999999988887533 899999976644445899
Q ss_pred EEEEchhhhhh-------------------ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 699 RIISCEMIEAV-------------------GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 699 ~v~s~~~~~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+|+++..+.+. +...+..+++++.++|||||.+++..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99987654331 12235778999999999999998743
No 129
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.38 E-value=6e-12 Score=135.25 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=99.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 002928 600 CAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQ 678 (864)
Q Consensus 600 ~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~ 678 (864)
.+.|....-+... +.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|+++++.+++.
T Consensus 173 pgvFs~~~lD~gt------~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 173 PGVFSRDGLDVGS------QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred CCCCCCCCCCHHH------HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 5566554433332 34555565445569999999999999999988 6679999999999999999999988873
Q ss_pred CCeEEEEcccCCCCCCCCccEEEEchhhhhhC---hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 679 DHIRLYLCDYRQLPKSNKYDRIISCEMIEAVG---HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 679 ~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.+++..|..+. .+++||+|+|+..+|+.. .+...++++++.+.|||||.+++..
T Consensus 247 --~~~~~~D~~~~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 247 --GEVFASNVFSD-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred --CEEEEcccccc-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 57788886543 347899999999887631 2456899999999999999999854
No 130
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=3.2e-12 Score=138.30 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=97.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
...++....++++.+|||+|||+|.+++.++.. +.+|+|+|+++.|++.|+++++..++++ +++.++|+.+++ .+++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 345666677889999999999999999988775 8999999999999999999999999874 899999999988 5689
Q ss_pred ccEEEEchhhhh-------hChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 697 YDRIISCEMIEA-------VGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 697 fD~v~s~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
||+|+++..+.. ...+....+++++.++|||||++++..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 999999754311 111236889999999999999999854
No 131
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.6e-12 Score=127.33 Aligned_cols=130 Identities=22% Similarity=0.376 Sum_probs=106.1
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc
Q 002928 597 LYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA 675 (864)
Q Consensus 597 ~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~ 675 (864)
+-.+++|+...-|... +.+++.+....+.+|||+|||+|.+++.+++. +..+++-+|+|...++.|++++..+
T Consensus 132 ~t~pGVFS~~~lD~GS------~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 132 KTLPGVFSRDKLDKGS------RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred EeCCCCCcCCCcChHH------HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 4457888877766665 57888888877779999999999999999999 6789999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhH----HHHHHHHHhccccCcEEEEEE
Q 002928 676 GLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYM----EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 676 ~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+++ +..+...|..+-.. ++||.|+|+-.||. +.+-. .+++++..+.|++||.|.|..
T Consensus 206 ~~~-~~~v~~s~~~~~v~-~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 206 GVE-NTEVWASNLYEPVE-GKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred CCC-ccEEEEeccccccc-ccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 886 33667777443323 49999999998874 33323 389999999999999999854
No 132
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.37 E-value=3.8e-12 Score=120.60 Aligned_cols=122 Identities=25% Similarity=0.399 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCC--CCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 002928 609 DLEVAQMRKVSLLIQKARVSK--GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC 686 (864)
Q Consensus 609 ~l~~aq~~~~~~~~~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (864)
.+...|.++.++.++.+.++. ..-|||||||+|..+..+... |...+|+|+|+.|++.|.++--+ -.++.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 344567788889999998876 678999999999999988886 88999999999999999974221 257888
Q ss_pred ccC-CCC-CCCCccEEEEchhhhh---------hChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 687 DYR-QLP-KSNKYDRIISCEMIEA---------VGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 687 d~~-~~~-~~~~fD~v~s~~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+- -+| .+++||.+||+..+.+ .|...+..+|..++.+|++|++.+++..-
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 864 466 6799999999987654 35566778899999999999999997653
No 133
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.36 E-value=4.5e-13 Score=127.48 Aligned_cols=181 Identities=25% Similarity=0.396 Sum_probs=132.0
Q ss_pred HHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC
Q 002928 574 RRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC 653 (864)
Q Consensus 574 ~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 653 (864)
...+..-||.-.+-|...+-....|+- -.++..++.+++..+-.++||+|||||.....+-.. -.
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 356777788777777877777777753 256778899998888899999999999999888776 56
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcE
Q 002928 654 KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGL 730 (864)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 730 (864)
+++|+|||++|++.|.++ |+ -=++.++|...+. .++.||+|++..++.++| +++.+|.-+..+|+|||.
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGL 220 (287)
T ss_pred hccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCce
Confidence 899999999999999876 32 1134455543322 457899999999999995 589999999999999999
Q ss_pred EEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 731 LLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 731 l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
|.++.-+.++.. +|. +-|.-.+-+.+.++..+.+..||+++.+++..
T Consensus 221 faFSvE~l~~~~--------~f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 221 FAFSVETLPDDG--------GFV---LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred EEEEecccCCCC--------Cee---cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 999766555431 011 11222223333334444445899999988754
No 134
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=2.1e-12 Score=117.71 Aligned_cols=106 Identities=25% Similarity=0.507 Sum_probs=89.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEchhh
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCEMI 706 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~~~ 706 (864)
|.+|||+|||+|.++..+++....+++|+|+++..++.+++++...++.++++++++|+.+.. .+++||+|+++-.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 569999999999999999998338999999999999999999999998889999999987765 56899999999877
Q ss_pred hhhC------hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 707 EAVG------HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 707 ~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.... .+....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5321 1245788999999999999999854
No 135
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=1e-11 Score=124.18 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 692 (864)
+.-..+++.+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.+++++++.++. +++++.+|+.+. +
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhh
Confidence 33345778888889999999999999999999876 5689999999999999999999888874 799999998652 2
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
....+|.|+... ..+...+++++.++|+|||++++...
T Consensus 106 ~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 223568776532 13568899999999999999999754
No 136
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.36 E-value=7.6e-12 Score=138.80 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHH
Q 002928 215 RSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDA 272 (864)
Q Consensus 215 ~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~ 272 (864)
..++.+|++.+.++ |++|+.+++|++|+.. .|+|.+| +++||+||+|++++..
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 47888999888775 9999999999999642 5778877 5889999999988743
No 137
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=3.3e-11 Score=120.22 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=96.7
Q ss_pred HHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcccCC
Q 002928 622 IQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKE-----------AGLQDHIRLYLCDYRQ 690 (864)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~-----------~~l~~~v~~~~~d~~~ 690 (864)
...+.+.++.+||+.|||.|..+.+||++ |.+|+|+|+|+..++.+.+.... .--..+|+++++|+.+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 34455567789999999999999999998 99999999999999998663200 0012479999999999
Q ss_pred CCC----CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 691 LPK----SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 691 ~~~----~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++. .++||.|+-...+++++++...++.+.+.++|+|||.+++..+.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 862 36899999999999999999999999999999999999987664
No 138
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.35 E-value=2.6e-12 Score=127.97 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEc
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNKYDRIISC 703 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~v~s~ 703 (864)
...+|||||||+|.++..++++ ++.+|+|+|+++++++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999988 7889999999999999999999988886 8999999997653 34689999988
Q ss_pred hhhhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..-.+.... ....+++++.++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 654332111 12578999999999999999854
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.35 E-value=3.8e-12 Score=126.43 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL- 691 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~- 691 (864)
-..+..+++.+.+++|++|||||||+|..+..++... ..+|++||+.++.++.|+++++..+.. +|+++++|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcc
Confidence 4567799999999999999999999999999999873 357999999999999999999998886 899999997653
Q ss_pred CCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 692 PKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 692 ~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+..++||+|++......+|. .+.+.||+||++++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 35678999999988876643 3667799999999843
No 140
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=1.2e-11 Score=128.70 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=111.8
Q ss_pred HHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHH
Q 002928 586 ELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQ 664 (864)
Q Consensus 586 ~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~ 664 (864)
+.....+++.|.+.+|..++ -++.-.+++.+ ..+|.+|||+|||+|.+++.+++. |+ +|+|+|+++..
T Consensus 128 ~~~~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~A 196 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLA 196 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHH
T ss_pred CcEEEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHH
Confidence 33346688888887765432 22223333443 467889999999999999999997 65 79999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccc
Q 002928 665 LKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYD 744 (864)
Q Consensus 665 ~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 744 (864)
++.|++++..+++.+++.+. ...+. ..++||+|+++-...- +..++..+.++|+|||.++++-+....
T Consensus 197 v~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlSGIl~~~---- 264 (295)
T PF06325_consen 197 VEAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILSGILEEQ---- 264 (295)
T ss_dssp HHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEEEEEGGG----
T ss_pred HHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEccccHHH----
Confidence 99999999999998877653 22222 2489999999865544 367888899999999999997664321
Q ss_pred cccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 745 EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 745 ~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
..++.+++. + ||++.+....+
T Consensus 265 ---------------------~~~v~~a~~-~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 265 ---------------------EDEVIEAYK-Q-GFELVEEREEG 285 (295)
T ss_dssp ---------------------HHHHHHHHH-T-TEEEEEEEEET
T ss_pred ---------------------HHHHHHHHH-C-CCEEEEEEEEC
Confidence 445566664 4 99998776554
No 141
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.35 E-value=1.4e-11 Score=129.67 Aligned_cols=108 Identities=22% Similarity=0.351 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
+++.+|||+|||+|.++..+++. ++++|+|+|+|+++++.|+++++..++.++++++++|+.+..++++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45679999999999999999987 67899999999999999999999999877899999998543334589999997321
Q ss_pred ------h-------hhC----------hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 707 ------E-------AVG----------HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 707 ------~-------~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. |-+ .+....+++++.++|+|||++++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 111 1234678999999999999999843
No 142
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.35 E-value=1e-11 Score=125.88 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (864)
.....+++.+.++++.+|||||||+|.++..+++. ..+|+++|+++++++.|+++++..++. ++++.++|..+.. ..
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcC
Confidence 44567778888899999999999999999988887 469999999999999999999988875 6999999976543 45
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++||+|++...+++++ +.+.+.|+|||++++...
T Consensus 143 ~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 7899999988776662 356789999999998654
No 143
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.34 E-value=8e-12 Score=133.72 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=95.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~ 695 (864)
.+++.+....+..+||||||+|.++..+|++ ++..++|+|+++.+++.|.+++...++. +|.++++|+..+. +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence 4555565566779999999999999999998 7889999999999999999999998886 7999999987652 678
Q ss_pred CccEEEEchhhhhhChhh----HHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCEMIEAVGHDY----MEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++|.|+++....|...+. .+.+++++.|+|+|||.+.+.+
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876544332111 2689999999999999999965
No 144
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=2.9e-11 Score=124.19 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=98.8
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C-CCCC
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL---P-KSNK 696 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~-~~~~ 696 (864)
+.+.++++++|||+|||+|.++.++++.. ..+|+++|+|+++.+...+.++.. .+|.++.+|++.. . ..++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 45568999999999999999999999983 468999999998665555544332 3899999998642 1 3458
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHH----HHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRI----TSA 772 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~----~~~ 772 (864)
||+|++... .+ .+...++.+++++|||||.++|. +-..... .-|+++++ ++.
T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~-ika~~id-------------------~g~~pe~~f~~ev~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIIS-IKANCID-------------------STAKPEVVFASEVQK 258 (293)
T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEE-Eeccccc-------------------cCCCHHHHHHHHHHH
Confidence 999999764 12 34566778999999999999993 2211100 11222222 366
Q ss_pred HhcCCCcEEEEEEeccc
Q 002928 773 MTSSSRLCVEDLENIGI 789 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~~ 789 (864)
|.+ +||++++..++.+
T Consensus 259 L~~-~GF~~~e~v~L~P 274 (293)
T PTZ00146 259 LKK-EGLKPKEQLTLEP 274 (293)
T ss_pred HHH-cCCceEEEEecCC
Confidence 765 8999988877653
No 145
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.31 E-value=2.9e-11 Score=128.87 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=89.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-KS 694 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~ 694 (864)
+.+.+.+ +++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++.......+|.++++|+.+. + ..
T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 3444444 467899999999999999999873 6899999999999999999887643223578899999873 3 21
Q ss_pred C----CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 695 N----KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 695 ~----~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. ...++++..++.++++++...+|++++++|+|||.+++..
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1 2234445568898988888999999999999999999854
No 146
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=7.3e-12 Score=120.33 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=93.5
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 656 TGITLSEEQLKYAEMKVKEAG--LQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 656 ~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
+|+|+|++|++.|+++.+..+ ...+++++++|++++| ++++||+|++..+++++ +++..++++++|+|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE
Confidence 589999999999988765322 2347999999999999 67899999999999999 578999999999999999999
Q ss_pred EEEecCCCcccccccCccchh---------------hhc--cc-CCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 733 LQFISVPDQCYDEHRLSPGFI---------------KEY--IF-PGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 733 i~~~~~~~~~~~~~~~~~~~~---------------~~~--i~-p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
+.++..++....... ..|. ..| +. .-..+++.+++.+.+.+ +||+......+.
T Consensus 79 i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~-aGF~~~~~~~~~ 149 (160)
T PLN02232 79 ILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALE-AGFSSACHYEIS 149 (160)
T ss_pred EEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHH-cCCCcceEEECc
Confidence 999876543211100 0000 011 00 00135778888888885 899877666544
No 147
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.31 E-value=9.5e-12 Score=131.13 Aligned_cols=94 Identities=19% Similarity=0.324 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-c---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-T---GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIIS 702 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~---~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s 702 (864)
.++.+|||||||+|.++..+++. + +++|+|+|+|+++++.|+++. .++++.++|+.++| ++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45678999999999999999876 2 248999999999999998753 26899999999988 6789999998
Q ss_pred chhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 703 CEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+.. +..++++.|+|||||++++...
T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 753 1235789999999999998654
No 148
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.31 E-value=1.4e-11 Score=123.45 Aligned_cols=153 Identities=24% Similarity=0.343 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-c------C----CCCCeEEEE
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKE-A------G----LQDHIRLYL 685 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~-~------~----l~~~v~~~~ 685 (864)
.+..+++.+..+++.+||..|||.|..+..||++ |.+|+|+|+|+..++.+.+.... . + -.++|++.+
T Consensus 25 ~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 25 ALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3445566677888899999999999999999998 99999999999999998543221 0 0 124789999
Q ss_pred cccCCCC--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCC
Q 002928 686 CDYRQLP--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCL 763 (864)
Q Consensus 686 ~d~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~ 763 (864)
+|+.+++ ..++||+|+=...++.++++...++.+.+.++|||||.+++.++..+..... ..+| .
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~----GPPf---------~- 169 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME----GPPF---------S- 169 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS----SSS------------
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC----CcCC---------C-
Confidence 9999987 2358999999999999999999999999999999999976655543322110 1111 1
Q ss_pred CCHHHHHHHHhcCCCcEEEEEEe
Q 002928 764 PSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
-+.+++.+.+. .+|+++.++.
T Consensus 170 v~~~ev~~l~~--~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG--PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT--TTEEEEEEEE
T ss_pred CCHHHHHHHhc--CCcEEEEEec
Confidence 24566666555 5899988776
No 149
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=2.8e-11 Score=121.86 Aligned_cols=236 Identities=13% Similarity=0.144 Sum_probs=145.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee--CC-eeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI--DG-VDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~--~G-~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.|++|||||++|+..|..|++.|.+|.|+|+++.+||.|.+... .| .+.--|+|.||. ....++++++++-. .
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-~~~~Vwdyv~~F~e---~ 77 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-DNKRVWDYVNQFTE---F 77 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-CchHHHHHHhhhhh---h
Confidence 48999999999999999999999999999999999999999887 46 556689999974 67788888887632 2
Q ss_pred ccceee-EEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 78 SDMSFS-VSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
...... ....+|+.+.++.. +............|...+.+.+.. .......+..++++-.-..
T Consensus 78 ~~Y~hrVla~~ng~~~~lP~n--l~ti~ql~G~~~~p~~a~~~i~~~-------------~~~~~~~~~q~~ee~ais~- 141 (374)
T COG0562 78 NPYQHRVLALVNGQLYPLPFN--LNTINQLFGKNFTPDEARKFIEEQ-------------AAEIDIAEPQNLEEQAISL- 141 (374)
T ss_pred hhhccceeEEECCeeeecccc--HHHHHHHhCccCCHHHHHHHHHHh-------------hccccccchhhhhhHHHHH-
Confidence 222211 23356666655431 111111112223333222221111 1011111223333333232
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCC-CccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeC
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHA-LQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTG 235 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~ 235 (864)
.+..+.++++.++..+.|+.+++++ ++..+-+.=....- ..-+....--.|++|+-.+.+.|+++- .++|.+|
T Consensus 142 vg~~LY~~f~kgYT~KQWG~~p~eL---pasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp---~I~V~Ln 215 (374)
T COG0562 142 VGRDLYEAFFKGYTEKQWGLDPKEL---PASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP---NIDVRLN 215 (374)
T ss_pred HHHHHHHHHhccccHHHhCCChHHC---CHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC---CceEEec
Confidence 5556778889999999999999998 44332211000000 011222223368899999998888855 6799999
Q ss_pred cceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHH
Q 002928 236 CEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDA 272 (864)
Q Consensus 236 ~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~ 272 (864)
|.-..+..... .+.+..||.|.|.+..
T Consensus 216 td~~~~~~~~~----------~~~~~~VvytG~iD~~ 242 (374)
T COG0562 216 TDFFDVKDQLR----------AIPFAPVVYTGPIDAY 242 (374)
T ss_pred CcHHHHhhhhc----------ccCCCceEEecchHhh
Confidence 98877643321 1456699999887643
No 150
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=3.6e-11 Score=127.74 Aligned_cols=105 Identities=22% Similarity=0.363 Sum_probs=86.7
Q ss_pred CCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh--
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI-- 706 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~-- 706 (864)
..+|||+|||+|.++..+++. ++++|+++|+|+.+++.|+++++..++.++++++++|+.+..++++||+|+++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 369999999999999999987 67899999999999999999999998877899999997653334689999997311
Q ss_pred -----------hhhC----------hhhHHHHHHHHHhccccCcEEEEE
Q 002928 707 -----------EAVG----------HDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 707 -----------~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.|-| .+....+++++.++|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111 123568899999999999999984
No 151
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.30 E-value=7.3e-12 Score=137.84 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=47.4
Q ss_pred cEEEec-CChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChH
Q 002928 206 QWLTVR-SRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 206 ~~~~~~-gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
...+|. .-...+++.|.+.++++|++|+++++|.+|+.++++ +.|.+.+++++.||.||+|+...
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence 344444 457799999999999999999999999999998888 78988677799999999998754
No 152
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.30 E-value=4e-11 Score=126.90 Aligned_cols=118 Identities=15% Similarity=0.264 Sum_probs=91.8
Q ss_pred HHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 618 VSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 618 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
++.+++.+. ..+..+|||+|||+|.++..++.. ++++|+|+|+|+++++.|+++++..++.++++++++|+.+..++.
T Consensus 102 v~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~ 181 (284)
T TIGR00536 102 VEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQ 181 (284)
T ss_pred HHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCC
Confidence 334444432 233369999999999999999987 568999999999999999999999888767999999986533334
Q ss_pred CccEEEEch-------------hhhhhC----------hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCE-------------MIEAVG----------HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~-------------~~~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+||+|+|+. ++.|-| .+.+..+++++.++|+|||.+++..
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 899999972 222221 1256788999999999999998843
No 153
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.27 E-value=5.6e-11 Score=113.30 Aligned_cols=68 Identities=37% Similarity=0.610 Sum_probs=53.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccC-CCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR-VTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~lG~~~~~~ 78 (864)
.||+|||||+|||+|||+||++|.+|+|+|++-.+|| |.+ .|++.|+. .-......+++++|++.+..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG--------G~w--~GGmlf~~iVv~~~a~~iL~e~gI~ye~~ 99 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG--------GIW--GGGMLFNKIVVREEADEILDEFGIRYEEE 99 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC--------ccc--ccccccceeeecchHHHHHHHhCCcceec
Confidence 4899999999999999999999999999999999999 433 34455542 23455667888888876543
No 154
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.27 E-value=2.8e-11 Score=121.49 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=85.1
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
-++..+.++.. ++++.+|||||||+|.++..+++. .+++|+|||+++ | ..++ +++++++|+.+.+
T Consensus 37 ~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~ 104 (209)
T PRK11188 37 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDEL 104 (209)
T ss_pred HhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChH
Confidence 34566667776 588999999999999999999997 346999999998 1 1222 6899999998842
Q ss_pred ---------CCCCccEEEEchhhhhhChhh---------HHHHHHHHHhccccCcEEEEEEec
Q 002928 693 ---------KSNKYDRIISCEMIEAVGHDY---------MEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 693 ---------~~~~fD~v~s~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.+++||+|+|..+.++.+... ...+++++.++|||||.+++..+.
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 457899999977655543221 256899999999999999996543
No 155
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.27 E-value=1.4e-10 Score=121.34 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
..++.+++.+. ..+.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++. +++++++|+.+..++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC
Confidence 44455566554 34569999999999999999987 6789999999999999999999988885 799999998764356
Q ss_pred CCccEEEEchhhh------hhCh------------------hhHHHHHHHHHhccccCcEEEEE
Q 002928 695 NKYDRIISCEMIE------AVGH------------------DYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 695 ~~fD~v~s~~~~~------~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++||+|+++..+. ++.. .....+++++.++|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7899999964322 1110 12357889999999999999984
No 156
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=4.2e-11 Score=126.94 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
..+..+++.++++++++|||||||+|.++..+++..+ .+|+++|+++++++.|+++++..+.. ++.++++|..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~ 145 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence 4556778888889999999999999999999998743 47999999999999999999988874 7999999987655
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..++||+|++...+.+++ ..+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 446899999987666552 23667899999998854
No 157
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.27 E-value=4.2e-11 Score=134.83 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+-+.|.+.+++.|++|+.+++|++++.+++++.+.+.+|++++||.||.|+....
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34455777777789999999999999888777755555666899999999986543
No 158
>PHA03411 putative methyltransferase; Provisional
Probab=99.26 E-value=1.1e-10 Score=118.32 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~ 705 (864)
.+++.+|||+|||+|.++..++++ .+.+|+|+|+|+.+++.++++. .+++++++|+.++..+++||+|+++..
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPP 135 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPP 135 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCC
Confidence 345679999999999999998886 3679999999999999998763 268999999998775578999999998
Q ss_pred hhhhChhh------------------HHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHH
Q 002928 706 IEAVGHDY------------------MEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLN 767 (864)
Q Consensus 706 ~~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (864)
+.|.+..+ ...+++....+|+|+|.+.+.--. ...|. .-.+..
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss--~~~y~-----------------~sl~~~ 196 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG--RPYYD-----------------GTMKSN 196 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec--ccccc-----------------ccCCHH
Confidence 88864432 245677788899999977664111 11111 113566
Q ss_pred HHHHHHhcCCCcEEE
Q 002928 768 RITSAMTSSSRLCVE 782 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~ 782 (864)
++.+.+++ +||...
T Consensus 197 ~y~~~l~~-~g~~~~ 210 (279)
T PHA03411 197 KYLKWSKQ-TGLVTY 210 (279)
T ss_pred HHHHHHHh-cCcEec
Confidence 77777775 898864
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.4e-11 Score=116.85 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=99.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
..++..+++.||++|||.|.|+|.++.+||.. +.++|+.+|+.++.++.|+++++..++.++|++..+|+.+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 47889999999999999999999999999975 4579999999999999999999999999889999999988774459
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
||+|+.- + .++-+++++++++|||||.+++..
T Consensus 164 vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEEEc
Confidence 9999974 3 568899999999999999999844
No 160
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.26 E-value=1.9e-10 Score=116.48 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEe---CCeEEEEECCCcEEecCEEEEccChHHHHHhhcC
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQY---GEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGN 278 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~---~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~ 278 (864)
.-.+.+...+++.|+.++-+..|..+... +..+.|.|.+|..+.|+.+|+|+.++... +++.
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 45667777888889999999999998753 44689999999789999999999988654 6663
No 161
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=1.3e-11 Score=119.30 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=113.8
Q ss_pred eEEEEcCCchHHHHHHHHh-cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEc
Q 002928 632 EVLEIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-----KSNKYDRIISC 703 (864)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~v~s~ 703 (864)
+|||||||.|.....+.+. ++ .+|.++|.|+..++..++...... .++...+.|+..-. ..+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999999887 44 799999999999999998765433 36666666754321 56899999999
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchh--hhcccCCCC---CCCHHHHHHHHhcCCC
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFI--KEYIFPGGC---LPSLNRITSAMTSSSR 778 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~i~p~~~---~~~~~~~~~~l~~~~g 778 (864)
+++..++++..+..+++++++|||||.+++.+....+.....+.. ..-+ +.|+-.+|. +.+.+++.+.+.+ +|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~-~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~-ag 229 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK-GQCISENFYVRGDGTRAYFFTEEELDELFTK-AG 229 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC-CceeecceEEccCCceeeeccHHHHHHHHHh-cc
Confidence 999999999999999999999999999999998766543222221 1111 234444443 3467777666665 89
Q ss_pred cEEEEEEe
Q 002928 779 LCVEDLEN 786 (864)
Q Consensus 779 f~v~~~~~ 786 (864)
|..+..+.
T Consensus 230 f~~~~~~~ 237 (264)
T KOG2361|consen 230 FEEVQLEV 237 (264)
T ss_pred cchhcccc
Confidence 98776543
No 162
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2e-10 Score=128.76 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KS 694 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (864)
..+...+++.+|++|||+|||+|..+.++++. .+.+|+++|+|+++++.++++++..|+ +++++++|+.+++ .+
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhccc
Confidence 35556778889999999999999999999998 347999999999999999999998887 4789999998764 24
Q ss_pred CCccEEEEchh------hhhh-------Ch-------hhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 695 NKYDRIISCEM------IEAV-------GH-------DYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 695 ~~fD~v~s~~~------~~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
++||.|++... +.+- .. ....++++++.++|||||++++.+++.
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999996432 1110 11 113578999999999999999987654
No 163
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=124.52 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcE-EecCEEEEccChHH--HHHhhc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQ-RVYDGCIMAVHAPD--ALRMLG 277 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~-~~ad~VV~A~~~~~--~~~ll~ 277 (864)
+..++..|++.+.++|++|++|++|+.|++.+++ +.+.|.+|++ ++|+.||.|.+.+. ++++.+
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 4589999999999999999999999999998884 5777888866 99999999987765 334444
No 164
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=1.3e-10 Score=131.02 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=96.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
.....+.+.+|.+|||+|||+|+.+.++++. .+.+|+++|+|+++++.+++++++.|+. +|+++++|+.+++++++|
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCC
Confidence 4445667788999999999999999999886 2469999999999999999999999985 799999999887756789
Q ss_pred cEEEEc------hhhh-------hhChh-------hHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 698 DRIISC------EMIE-------AVGHD-------YMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 698 D~v~s~------~~~~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
|+|++. +++. +...+ ....++.++.++|||||++++.+++..
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999962 1221 11111 234689999999999999999887654
No 165
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.20 E-value=1.9e-10 Score=123.95 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--K 693 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~ 693 (864)
.++.+++.+ +++.+|||+|||+|.+++.++++ ++++|+|+|+|+++++.|+++++..+. +++++++|+.+.. .
T Consensus 241 LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 241 LVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS 316 (423)
T ss_pred HHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc
Confidence 344444443 35679999999999999999976 688999999999999999999988765 7999999986543 3
Q ss_pred CCCccEEEEchhhhh-----h------------------ChhhHHHHHHHHHhccccCcEEEE
Q 002928 694 SNKYDRIISCEMIEA-----V------------------GHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~-----~------------------~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.++||+|+|+...-. . |.+.+..+++++.+.|+|||.+++
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 468999999764210 0 112355778888899999999887
No 166
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.20 E-value=1.7e-10 Score=129.14 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
...+++.|.+.+++.|++|+++++|.+|+..++++.|.+.+| ++.||.||+|++...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 368999999999999999999999999998888888888877 799999999987654
No 167
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=2.7e-10 Score=120.88 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
.++.++..+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++. .....+++++++|+.+...++
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~ 174 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGG 174 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCC
Confidence 3445555555667889999999999999999988 56899999999999999999987 334458999999986543457
Q ss_pred CccEEEEchhhh------hh------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 696 KYDRIISCEMIE------AV------------------GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 696 ~fD~v~s~~~~~------~~------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+||+|+++.... .+ +.+....+++++.++|||||.+++.
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 899999963221 01 1134577889999999999999983
No 168
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1.8e-10 Score=117.77 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-------KSNKY 697 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~f 697 (864)
..++.+|||||||+|..+..++.. .+++|+++|+++++++.|++++++.|+.++|+++.+|+.+.- +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 445679999999999999988876 367999999999999999999999999989999999987641 24689
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+|+...- .+.+..++..+.++|+|||.+++....
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99997532 245678999999999999999986543
No 169
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=3.2e-10 Score=126.49 Aligned_cols=120 Identities=20% Similarity=0.278 Sum_probs=96.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
.+...+++++|.+|||+|||+|+.+.++++. .+.+|+++|+|+.+++.+++++++.|+. +++++++|+.+++ .++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc
Confidence 4445567889999999999999999999987 3579999999999999999999999985 6999999998876 357
Q ss_pred CccEEEEch------hhhh-------hChh-------hHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 696 KYDRIISCE------MIEA-------VGHD-------YMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 696 ~fD~v~s~~------~~~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+||.|++.- ++.. .+.+ ...+++.++.++|||||.++..+++...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 899999732 2221 1111 2366799999999999999998877543
No 170
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=2.4e-10 Score=111.24 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=87.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
++.+++.+.+.++++|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++++|+.+++ ++.+
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccC
Confidence 357788888889999999999999999999998 88999999999999999988754 248999999999987 4457
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
||.|+++-.++ +..+....++++. .+.++|.++++.
T Consensus 78 ~d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CCEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 99999986654 3223333443321 245888888864
No 171
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.18 E-value=1e-09 Score=122.60 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC-CCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG-DDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~-~G~~~~ad~VV~A~~~~~ 271 (864)
.+-+-|++.++++|++++.++.|+.+..+++++.+.+. ++.+++|+.||.|.....
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 45556888888889999999999999998877654443 335899999999975443
No 172
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.17 E-value=3.3e-10 Score=117.49 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=96.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
..+.......+..+|+|||+|.|.++..++++ |+.+++..|+ |+.++.+++ .++|+++.+|+. -+.+. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-c
Confidence 45666677778889999999999999999998 8999999998 888888887 359999999987 33223 9
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccC--cEEEEEEecCCCcc
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEH--GLLLLQFISVPDQC 742 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~ 742 (864)
|+|+...++|+.++++...+|+++++.|+|| |+++|.+...++..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999999999999999999999999 99999998876654
No 173
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.17 E-value=3.1e-10 Score=109.77 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=118.3
Q ss_pred CCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C------CCCccE
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K------SNKYDR 699 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~------~~~fD~ 699 (864)
+.+|||||||+|..+.++|++ +..+-.-.|+++......++.+.+.+++.-..-+..|+.+-+ . .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 335999999999999999999 888999999999998888888888887633345566766543 1 358999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc--cCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH--RLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
|++.+|+|-++.+..+.+|+.+.++|+|||.|++......+..+... ...+.+++.. -|..-+...+++.+... +.
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~~lA~-~~ 183 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVEALAA-AH 183 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHHHHHH-HC
Confidence 99999999999888999999999999999999997655444332211 1122333322 46666778888766555 48
Q ss_pred CcEEEEEEecc
Q 002928 778 RLCVEDLENIG 788 (864)
Q Consensus 778 gf~v~~~~~~~ 788 (864)
||++++..++.
T Consensus 184 GL~l~~~~~MP 194 (204)
T PF06080_consen 184 GLELEEDIDMP 194 (204)
T ss_pred CCccCcccccC
Confidence 99988776654
No 174
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.17 E-value=2e-10 Score=128.75 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=97.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KS 694 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (864)
..+...+++.+|.+|||+|||+|+.+.++++. ++++|+++|+|+++++.++++++..|+..++.+..+|..+.+ .+
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 46666778889999999999999999999987 457999999999999999999999988644455777776544 35
Q ss_pred CCccEEEEc------hhhhhhCh--------------hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 695 NKYDRIISC------EMIEAVGH--------------DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 695 ~~fD~v~s~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
++||.|++. +++.+.++ .....++.++.++|||||+++.++++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 789999963 34544332 11467899999999999999998877543
No 175
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=3.9e-10 Score=126.63 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=98.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--- 692 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (864)
-..+...+.+++|.+|||+|||+|+.+.++++.. .++|+++|+++++++.++++++..|+. +|+++++|+.+++
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence 3455566788899999999999999999999872 469999999999999999999999986 6999999998775
Q ss_pred --CCCCccEEEEc------hhhhhhCh-------h-------hHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 693 --KSNKYDRIISC------EMIEAVGH-------D-------YMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 693 --~~~~fD~v~s~------~~~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
..++||.|++. +++.+-++ + ...++++++.++|||||+++..+++..
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 14689999974 34443322 1 146789999999999999999876643
No 176
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.16 E-value=2.7e-09 Score=114.61 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC-CcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD-DFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~-G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++++++++|++++.+++++.+.+.+ +.+++||.||.|+....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 456667777777899999999999999888887666543 35799999999987654
No 177
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.16 E-value=2.8e-10 Score=118.91 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=93.1
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDR 699 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~ 699 (864)
..+.+++|.+|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..++. +|++++.|..+++ ..++||+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence 45677899999999999999999999872 469999999999999999999999985 7999999988776 4467999
Q ss_pred EEEch------hhhhh-------Ch-------hhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 700 IISCE------MIEAV-------GH-------DYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 700 v~s~~------~~~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
|++.- ++.+- .. +....+++++.++|||||+++.++.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99632 22111 11 1235689999999999999998876643
No 178
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.16 E-value=4.1e-10 Score=114.07 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
.-+..|+..+++.||++|||.|.|+|.++..+++. +..+|+..|+.++.++.|+++++..|+.++|++.+.|+.+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 44568899999999999999999999999999987 668999999999999999999999999999999999986422
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHHHhcc-ccCcEEEEEE
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLL-AEHGLLLLQF 735 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~ 735 (864)
.+..+|+|+.- + .++-.++..+.++| ||||++++-.
T Consensus 107 ~~~~~~~~DavfLD-----l--p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 107 DEELESDFDAVFLD-----L--PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp STT-TTSEEEEEEE-----S--SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccccCcccEEEEe-----C--CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 23689999975 3 34567888899999 8999999843
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=3.1e-10 Score=128.89 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh-
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI- 706 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~- 706 (864)
++.+|||+|||+|.+++.++.. ++++|+++|+|+++++.|++++...++.++++++++|+.+..+.++||+|+|+...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4568999999999999999887 67899999999999999999999888877899999997553334689999996321
Q ss_pred -------------hhh----------ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 707 -------------EAV----------GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 707 -------------~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.|- |-+.+..+++++.++|+|||.+++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 111 1123566788999999999999884
No 180
>PRK04457 spermidine synthase; Provisional
Probab=99.15 E-value=1.6e-10 Score=120.06 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~ 704 (864)
.++.+|||||||.|.++..+++. ++.+|+++|+++++++.|++.+...+..++++++++|+.+.- ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 788999999999999999998765554568999999986642 346899999753
Q ss_pred hh-hhhChh-hHHHHHHHHHhccccCcEEEEEEec
Q 002928 705 MI-EAVGHD-YMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 705 ~~-~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.- ...+.. ...++++++.++|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 10 111111 2379999999999999999996443
No 181
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.13 E-value=3.4e-10 Score=109.86 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK-SNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~v~s~~~~~ 707 (864)
...+.||.|||.|..+..+....--+|..||.++..++.|++.+... .....++++.-++++.| +++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999999887665569999999999999999876541 12235788888888874 47999999999999
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
|+.++++.++|++|+..|+|+|.+++-+-...... ..+..... ....+...+.+.+.+ +|++++..+.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~Ds---------SvTRs~~~~~~lF~~-AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDS---------SVTRSDEHFRELFKQ-AGLRLVKEEK 201 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTT---------EEEEEHHHHHHHHHH-CT-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccC---------eeecCHHHHHHHHHH-cCCEEEEecc
Confidence 99999999999999999999999999765543321 01111000 112245566666665 9999987543
No 182
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.12 E-value=2.8e-10 Score=110.30 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCCC-eEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 628 SKGH-EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 628 ~~~~-~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
.++. .++|+|||+|..++-+|.. --+|+|+|+|++|++.|++..+..-.....++...+..++. .+++.|+|++..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3444 8999999999777777776 56999999999999999876432111111233333344444 5789999999999
Q ss_pred hhhhChhhHHHHHHHHHhccccCc-EEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHG-LLLL 733 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG-~l~i 733 (864)
+|++ ++++++++++|+||+.| .+.+
T Consensus 110 ~HWF---dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWF---DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhh---chHHHHHHHHHHcCCCCCEEEE
Confidence 9999 68999999999999877 5555
No 183
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=4.5e-10 Score=126.77 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=94.5
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
.+...+.++++.+|||+|||+|..+..+++. ++++|+++|+++++++.++++++..|+. +++++++|+.++. ..+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcc
Confidence 4455667788999999999999999999987 3679999999999999999999999986 5999999998764 236
Q ss_pred CccEEEEchh------hhhhC-------hh-------hHHHHHHHHHhccccCcEEEEEEecC
Q 002928 696 KYDRIISCEM------IEAVG-------HD-------YMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 696 ~fD~v~s~~~------~~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+||+|++... +.+-+ .+ ....+++++.++|||||+++..+.+.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 8999998532 11111 01 12468999999999999999876554
No 184
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.11 E-value=1e-09 Score=108.72 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 002928 610 LEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687 (864)
Q Consensus 610 l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (864)
....+-+.+..++...+ ..+||||||++|..++++|+. .+++|+.+|++++..+.|++.++..|+.++|+++.+|
T Consensus 29 i~~~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 105 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred cCHHHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 33444455555555543 459999999999999999987 4689999999999999999999999999999999999
Q ss_pred cCCC-C------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 688 YRQL-P------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 688 ~~~~-~------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+.+. + ..++||.|+.-.. ..++..+++.+.++|+|||.+++......
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred cHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 8663 2 1358999998742 34678999999999999999999665443
No 185
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=7.1e-10 Score=109.33 Aligned_cols=111 Identities=25% Similarity=0.317 Sum_probs=94.3
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC---CCCCcc
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL-CDYRQLP---KSNKYD 698 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~-~d~~~~~---~~~~fD 698 (864)
+...+..+|||||++.|..++++|.. + +.+++.||+++++.+.|++++++.|+.++|+++. +|..+.- ..++||
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 34456789999999999999999998 5 6899999999999999999999999999999999 5865543 358999
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+|+.-. ...+++.+|+.+.++|+|||.+++..+..+.
T Consensus 135 liFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 135 LVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 999752 2346799999999999999999997765544
No 186
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.09 E-value=8.1e-10 Score=109.70 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=78.5
Q ss_pred HHHHHHc-CCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 002928 619 SLLIQKA-RVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--- 692 (864)
Q Consensus 619 ~~~~~~l-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (864)
..+.++. .++++.+|||+|||+|.++..++++ ..++|+++|+|+.+ .. .+++++++|+.+..
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHH
Confidence 3444544 3688999999999999999999887 34689999999864 11 26889999987632
Q ss_pred ------CCCCccEEEEchh--------hhhh-ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 ------KSNKYDRIISCEM--------IEAV-GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ------~~~~fD~v~s~~~--------~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++++||+|++... ++|. ..+....+++++.++|+|||++++..
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3467999998643 2222 11234789999999999999999964
No 187
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=1.3e-09 Score=112.69 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=85.5
Q ss_pred HHHHHHHHcCC-CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-
Q 002928 617 KVSLLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P- 692 (864)
Q Consensus 617 ~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 692 (864)
.++.++..+.. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.++ ++++++|+.+. +
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcch
Confidence 34444444432 33468999999999999999987 56799999999999999999988654 47899998653 2
Q ss_pred -CCCCccEEEEchhhh------hhC------------------hhhHHHHHHHHHhccccCcEEEEE
Q 002928 693 -KSNKYDRIISCEMIE------AVG------------------HDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~------~~~------------------~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
..++||+|+++-... .++ .+-+..+++.+.++|||||.+++.
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 235799999985331 111 112457888899999999999984
No 188
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=4.9e-10 Score=118.04 Aligned_cols=108 Identities=23% Similarity=0.311 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcccCCCC--CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMKVKEAG--L--QDHIRLYLCDYRQLP--KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l--~~~v~~~~~d~~~~~--~~~~fD~v 700 (864)
+.+.+||+||||+|..+..+++.+ ..+|++||+++++++.|++.+...+ . .++++++.+|+.+.- ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 456799999999999999999874 4689999999999999999876432 1 458999999987653 45789999
Q ss_pred EEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEE
Q 002928 701 ISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++...-.+.+.. .-.++++.++++|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986432221111 23788999999999999999853
No 189
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.08 E-value=7.2e-10 Score=98.18 Aligned_cols=101 Identities=29% Similarity=0.516 Sum_probs=85.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchhhhhh
Q 002928 632 EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEMIEAV 709 (864)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~~~~~ 709 (864)
+|+|+|||.|.++..+++..+.+++++|+++++++.+++..... ...+++++..|+.+.. ..++||+|++..++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999999855789999999999999998644333 3357999999988876 45789999999999884
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 710 GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 710 ~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 267899999999999999999985
No 190
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.08 E-value=9.6e-10 Score=124.32 Aligned_cols=57 Identities=7% Similarity=-0.025 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhh----cC--ceEEeCcceEEEEEe-CCeEEEEECCCcEEecCEEEEccChHHH
Q 002928 215 RSYVDKVIELLES----LG--CQIKTGCEVRSVLQY-GEGRIEIRGDDFQRVYDGCIMAVHAPDA 272 (864)
Q Consensus 215 ~~l~~~La~~~~~----~G--~~I~~~~~V~~I~~~-~~~~~V~~~~G~~~~ad~VV~A~~~~~~ 272 (864)
..+++.|++.+++ .| ++|+++++|+.|++. ++.|.|+|.+| ++.||.||+|+.++..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 5889999999988 77 789999999999987 44578999888 7999999999988754
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.07 E-value=6.3e-10 Score=118.53 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcccCCC------CC
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAG---------LQDHIRLYLCDYRQL------PK 693 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~---------l~~~v~~~~~d~~~~------~~ 693 (864)
++.+|||+|||-|+-..-.....-..++|+|+|.+.++.|++|.++.. ..-...++.+|.... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887766666535699999999999999999993211 112467888886432 22
Q ss_pred -CCCccEEEEchhhhhh--ChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 694 -SNKYDRIISCEMIEAV--GHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 694 -~~~fD~v~s~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
..+||+|-|..++|+. .++....+++++.+.|+|||+++.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2599999999999986 455678899999999999999999765
No 192
>PRK10015 oxidoreductase; Provisional
Probab=99.06 E-value=4e-09 Score=118.71 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
+-+.|.+.+++.|++|+.+++|+.|..+++++.+...++.+++||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 4445777777789999999999999887777754444555799999999977543
No 193
>PLN02476 O-methyltransferase
Probab=99.05 E-value=1.8e-09 Score=111.06 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=91.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C------CCCCc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P------KSNKY 697 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~------~~~~f 697 (864)
..+..+||||||++|..++++|+. .+.+|+++|.+++..+.|++.+++.|+.++|+++.+|+.+. + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 345679999999999999999985 36789999999999999999999999999999999998653 2 13689
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
|.|+.-.- ..++..+++.+.++|+|||.+++.....
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 99997642 3567899999999999999999866543
No 194
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.05 E-value=2.2e-09 Score=127.31 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC--CCCCccEEEEch
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQLP--KSNKYDRIISCE 704 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--~~~~fD~v~s~~ 704 (864)
++.+|||+|||+|.+++.+++. |+ +|++||+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999987 55 6999999999999999999999986 68999999986643 246899999964
Q ss_pred h-----------hhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 705 M-----------IEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 705 ~-----------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. +... +++..+++.+.++|+|||.+++.+
T Consensus 617 P~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 1122 467788999999999999998854
No 195
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.04 E-value=2.9e-09 Score=110.46 Aligned_cols=38 Identities=47% Similarity=0.838 Sum_probs=35.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
.||+|||||+|||+||++|+++|++|+|+|++..+||.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 38999999999999999999999999999999998873
No 196
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.04 E-value=4.4e-09 Score=117.22 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=54.6
Q ss_pred EEEecCC---hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 207 WLTVRSR---SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 207 ~~~~~gG---~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.+| ...++..|++.+.+ |++|+.+++|++|+.++++|.|+|.+|++++||+||+|+....
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3344444 26899999999999 9999999999999988888999999997799999999988764
No 197
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.03 E-value=4.6e-09 Score=108.58 Aligned_cols=38 Identities=39% Similarity=0.697 Sum_probs=35.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
.||+|||||++||+||+.|+++|.+|+|+|++..+||.
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 48999999999999999999999999999999998873
No 198
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.03 E-value=1.9e-09 Score=118.14 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQLP-----KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~v~ 701 (864)
.++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999999877653349999999999999999999999986 58999999987652 246899999
Q ss_pred EchhhhhhCh-------hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 702 SCEMIEAVGH-------DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 702 s~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+......-.. ..+..+++.+.++|+|||.++..+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9854322111 2466777889999999999998553
No 199
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.03 E-value=4.5e-09 Score=118.55 Aligned_cols=113 Identities=15% Similarity=0.291 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
...++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|+++++..++. +++++++|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhh
Confidence 356677888888888999999999999999999987 689999999999999999999988875 7999999986532
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.+++||+|++...-. .....++.+.+ ++|++.+++++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEe
Confidence 246799999875432 12345555555 68999888854
No 200
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.5e-09 Score=110.84 Aligned_cols=101 Identities=24% Similarity=0.444 Sum_probs=82.7
Q ss_pred eEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCCCccEEEEchhh---
Q 002928 632 EVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LPKSNKYDRIISCEMI--- 706 (864)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~~~fD~v~s~~~~--- 706 (864)
+|||||||+|.+++.++.+ +.++|+|+|+|++.++.|++++..+++ .++.++.+|..+ +. ++||+|+|+-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC--CceeEEEeCCCCCCC
Confidence 8999999999999999998 667999999999999999999999998 577777777543 33 499999998421
Q ss_pred ----------hh-----h-----ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 707 ----------EA-----V-----GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 707 ----------~~-----~-----~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.| + |-+-...++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 01 0 22356788999999999999998843
No 201
>PRK06847 hypothetical protein; Provisional
Probab=99.01 E-value=4.7e-09 Score=116.98 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++|+.+++++.|++.+|++++||.||.|.....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 56677777777779999999999999988888999998998999999999977654
No 202
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.01 E-value=4.3e-09 Score=117.93 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++.|++|+.+++|++++.++++++|++.+|++++||.||.|.....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 57777888888889999999999999998888999888888899999999976543
No 203
>PRK07190 hypothetical protein; Provisional
Probab=99.01 E-value=3.4e-08 Score=112.76 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
+-+.|.+.+.+.|++|+.+++|+.|+++++++.+++.+|++++|+.||.|..... ..+.++
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 4445666677779999999999999998888888888888899999999987655 334444
No 204
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.00 E-value=5.2e-09 Score=117.13 Aligned_cols=55 Identities=13% Similarity=-0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+.+.| ++|+.+++|++|+..++++.|++.+|+++++|.||.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 57777888888777 99999999999998888899999999889999999986544
No 205
>PHA03412 putative methyltransferase; Provisional
Probab=99.00 E-value=2e-09 Score=106.69 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++.. ++.++.+|+.+.+.+++||+||++-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999999875 25699999999999999997642 5899999998766557899999997
Q ss_pred hhhhh----------ChhhHHHHHHHHHhccccCcE
Q 002928 705 MIEAV----------GHDYMEEFFGCCESLLAEHGL 730 (864)
Q Consensus 705 ~~~~~----------~~~~~~~~l~~~~~~LkpgG~ 730 (864)
.+.-. +..-...+++.+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 66522 212356688888887776664
No 206
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.00 E-value=6.7e-09 Score=115.83 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
....+.+.|.+.+++.|++|+++++|++|+.+++.+.|++ +++++.||.||+|++...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3568899999999999999999999999988777788877 455899999999998653
No 207
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.98 E-value=7.5e-09 Score=116.26 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.+ ++++.+++|++++.+++++.|++.+|++++||.||.|.....
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 46666777776655 899999999999988888999988988899999999976544
No 208
>PLN02366 spermidine synthase
Probab=98.97 E-value=3e-09 Score=112.37 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMKVKEA--GL-QDHIRLYLCDYRQLP---KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~---~~~~fD~v 700 (864)
+...+||+||||.|..+..+++.++ .+|+.+|+++++++.|++.+... ++ .++++++.+|+.+.- ++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4568999999999999999998754 68999999999999999987653 22 348999999976542 24689999
Q ss_pred EEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEE
Q 002928 701 ISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++...-.+.+.. .-..+++.++++|+|||.++.+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986433222111 23678999999999999998864
No 209
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.97 E-value=5.6e-09 Score=103.79 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~ 707 (864)
...++||||+|.|..+..++.. -.+|+++|+|+.|....+++ | .+++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999987 56899999999996665543 4 3444 333344 446899999999999
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC-ccchhhhccc-CCCC-CCCHHHHHHHHhcCCCcEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL-SPGFIKEYIF-PGGC-LPSLNRITSAMTSSSRLCVEDL 784 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~i~-p~~~-~~~~~~~~~~l~~~~gf~v~~~ 784 (864)
.. .++..+++++++.|+|+|++++... .|-..|-+... ...--.+.+. ++.. --.+..+.+.+.. +||+++.+
T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p-~GF~v~~~ 238 (265)
T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEP-AGFEVERW 238 (265)
T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHh-cCCEEEEE
Confidence 88 6789999999999999999998653 33322222211 0000111111 1100 0123344455554 89999988
Q ss_pred Eec
Q 002928 785 ENI 787 (864)
Q Consensus 785 ~~~ 787 (864)
...
T Consensus 239 tr~ 241 (265)
T PF05219_consen 239 TRL 241 (265)
T ss_pred ecc
Confidence 764
No 210
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.97 E-value=8.8e-09 Score=113.10 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..++++|++.+++.|+.|.+|++|++|....+ .+.|.|..| .+++.+||.|+....
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 57999999999999999999999999977655 468999999 799999999987664
No 211
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.97 E-value=5.3e-09 Score=101.07 Aligned_cols=38 Identities=45% Similarity=0.725 Sum_probs=32.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
.||+|||||+|||+||++|+++|++|+|+|++..+||.
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg 55 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG 55 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 38999999999999999999999999999999999983
No 212
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=1e-08 Score=100.96 Aligned_cols=124 Identities=20% Similarity=0.325 Sum_probs=96.2
Q ss_pred HHHHHHHHHcC---CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-
Q 002928 616 RKVSLLIQKAR---VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ- 690 (864)
Q Consensus 616 ~~~~~~~~~l~---~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~- 690 (864)
..++.+++.+. ...+..+||+|||+|.++..++.. +.++|++||.|+.++..|.++++..++.+++.+++-+++.
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 34445555443 345568999999999999999987 8899999999999999999999999999999999665433
Q ss_pred ----CC-CCCCccEEEEchhhh------hh------------------ChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 691 ----LP-KSNKYDRIISCEMIE------AV------------------GHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 691 ----~~-~~~~fD~v~s~~~~~------~~------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
.+ .++++|+++|+-..- .+ |.+.+..++.-+.|+|+|||.+.+.....+
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~ 289 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK 289 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc
Confidence 22 468999999985320 00 224566788889999999999999766443
No 213
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.96 E-value=2e-08 Score=114.14 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=50.2
Q ss_pred EEEecCC---hHHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeEEEEE---CCC--cEEecCEEEEccChHH
Q 002928 207 WLTVRSR---SRSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGRIEIR---GDD--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 207 ~~~~~gG---~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~~V~~---~~G--~~~~ad~VV~A~~~~~ 271 (864)
.+.+.+| ...++++|++.++++|++|+++++|++|+.++ ++|.|++ .+| .+++||+||+|+..+.
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 3344444 36899999999999999999999999998865 4576653 234 2689999999988764
No 214
>PRK07588 hypothetical protein; Provisional
Probab=98.96 E-value=1e-08 Score=114.93 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+++.. |++|+++++|++|+.++++|.|++++|+++++|.||.|-...
T Consensus 104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 455556555543 799999999999999888999999999889999999996544
No 215
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=4.8e-09 Score=112.79 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KS 694 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~ 694 (864)
.++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++..++ ++++++++|+.++. ..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcC
Confidence 4444455554445689999999999999999996 78999999999999999999999998 48999999998764 34
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++||+|++...-.-+ ...+.+. ..-++|++.++++
T Consensus 239 ~~~D~Vv~dPPr~G~----~~~~~~~-l~~~~~~~ivyvs 273 (315)
T PRK03522 239 EVPDLVLVNPPRRGI----GKELCDY-LSQMAPRFILYSS 273 (315)
T ss_pred CCCeEEEECCCCCCc----cHHHHHH-HHHcCCCeEEEEE
Confidence 579999998542211 1222222 3336787777764
No 216
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.96 E-value=3.9e-09 Score=104.37 Aligned_cols=103 Identities=27% Similarity=0.381 Sum_probs=83.4
Q ss_pred eEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CCCCccEEEEchhh
Q 002928 632 EVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---KSNKYDRIISCEMI 706 (864)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~~fD~v~s~~~~ 706 (864)
.+||||||.|.++..+|+. ++..++|+|++...+..+.+++...+++ |+.++++|+..+ . ++++.|.|..++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999998 9999999999999999999999999986 999999999883 2 56899999998754
Q ss_pred hhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 707 EAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 707 ~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
-|...+ --+.+++.+.++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333211 13678999999999999998854
No 217
>PRK07236 hypothetical protein; Provisional
Probab=98.95 E-value=8.9e-09 Score=115.01 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEc--cChHHHHHhhc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMA--VHAPDALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A--~~~~~~~~ll~ 277 (864)
+.+.|.+.+. +++|+++++|++|+.++++++|++++|++++||.||.| +.+.+...+++
T Consensus 102 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~ 162 (386)
T PRK07236 102 LYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP 162 (386)
T ss_pred HHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence 4444555543 46899999999999988899999999989999999999 44444444444
No 218
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.8e-08 Score=93.45 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=69.0
Q ss_pred HcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEc
Q 002928 624 KARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISC 703 (864)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~ 703 (864)
..+.-.|.+|+|+|||||.+++.++-....+|+|+|+++++++.+++++.+ +.++|+++++|+.++. +.||.|+++
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 334456889999999999999998887336899999999999999999987 4468999999999987 789999998
Q ss_pred hhhhh
Q 002928 704 EMIEA 708 (864)
Q Consensus 704 ~~~~~ 708 (864)
-.|..
T Consensus 116 PPFG~ 120 (198)
T COG2263 116 PPFGS 120 (198)
T ss_pred CCCcc
Confidence 76643
No 219
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.95 E-value=1.6e-08 Score=115.84 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE--CCC--cEEecCEEEEccChH
Q 002928 211 RSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR--GDD--FQRVYDGCIMAVHAP 270 (864)
Q Consensus 211 ~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~--~~G--~~~~ad~VV~A~~~~ 270 (864)
.++...++..|.+.+++.|++|+++++|++|..+++++ .|.+ .+| ..+.|+.||+|+...
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 44556889999999999999999999999998877765 3433 233 358899999998764
No 220
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.95 E-value=6e-09 Score=109.44 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDHIRLYLCDYRQLP--KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~v~ 701 (864)
+.+.+||+||||+|..+..+++.. ..+|+++|+++++++.+++.+...+ + ..+++++.+|..+.- .+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 344599999999999999998874 5689999999999999999875432 1 247899999976532 347899999
Q ss_pred EchhhhhhChhh--HHHHHHHHHhccccCcEEEEE
Q 002928 702 SCEMIEAVGHDY--MEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 702 s~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+......-+..+ ..++++.++++|+|||.++++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865422211122 468899999999999999986
No 221
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.95 E-value=4.7e-09 Score=121.69 Aligned_cols=57 Identities=14% Similarity=-0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE---CCC--cEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR---GDD--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~---~~G--~~~~ad~VV~A~~~~~ 271 (864)
..++.++++.+.++|++|+++++|++|..+++++ .|++ .+| .++.|+.||.|+.++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4788889999999999999999999999887765 3443 223 3789999999998775
No 222
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.95 E-value=5.7e-09 Score=115.83 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=81.5
Q ss_pred CCeEEEEcCCchHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
+..|||||||+|.++..+++.. ..+|++||.|+.++...+++++.+++.++|+++.+|++++..+.+.|+|||-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999988776651 36999999999999888888888999999999999999998556999999976
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
+=.....|-.++.+....+.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433333567788999999999999875
No 223
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.95 E-value=7e-09 Score=102.45 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=86.0
Q ss_pred HHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 619 SLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 619 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
+.+++.+. ..++.+|||+|||+|.+++.++.+...+|+++|++++.++.++++++..++. +++++++|+.+.. ..+
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~ 120 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGT 120 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCC
Confidence 34444443 2467899999999999999765553579999999999999999999988875 7999999986632 345
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHh--ccccCcEEEEEEe
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCES--LLAEHGLLLLQFI 736 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 736 (864)
+||+|++.-.+.. ......++.+.. +|+|++.++++..
T Consensus 121 ~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 121 PHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7999999987532 123455555554 4899999998654
No 224
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=1.8e-09 Score=102.88 Aligned_cols=147 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred hccccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchH
Q 002928 563 HISRKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGT 642 (864)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~ 642 (864)
+++.|+-++..++..+..-|..++++. ++.-++..+++.+.- +....++|||||-|.
T Consensus 29 ~iFDR~~KR~qrdrAa~~~d~k~dylk---------------------eeig~rlaDrvfD~k--k~fp~a~diGcs~G~ 85 (325)
T KOG2940|consen 29 KIFDRDLKRIQRDRAAWLSDQKNDYLK---------------------EEIGDRLADRVFDCK--KSFPTAFDIGCSLGA 85 (325)
T ss_pred HhhhhHHHHHHHhHHhhcchhhhhHHH---------------------HHHHHHHHHHHHHHh--hhCcceeecccchhh
Confidence 445555556666655555565565543 223345555554443 344589999999999
Q ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHH
Q 002928 643 LAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCC 721 (864)
Q Consensus 643 ~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~ 721 (864)
...++..+.-.+++-+|.|-.|++.++.. ++.++ .+...++|-+.++ .+.++|+|++...+|++ .+++..+.+|
T Consensus 86 v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW~--NdLPg~m~~c 160 (325)
T KOG2940|consen 86 VKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHWT--NDLPGSMIQC 160 (325)
T ss_pred hhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhhh--ccCchHHHHH
Confidence 99999988435899999999999998753 33333 4678889988888 77899999999999999 7799999999
Q ss_pred HhccccCcEEEEEEec
Q 002928 722 ESLLAEHGLLLLQFIS 737 (864)
Q Consensus 722 ~~~LkpgG~l~i~~~~ 737 (864)
+..|||+|.++-.-+.
T Consensus 161 k~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 161 KLALKPDGLFIASMLG 176 (325)
T ss_pred HHhcCCCccchhHHhc
Confidence 9999999999875443
No 225
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.94 E-value=1.3e-09 Score=109.96 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+++.+.+|+++++|+++++++++|.|++.++++++||+||+|+...
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 33333344888999999999999999999999999889999999998753
No 226
>PRK06753 hypothetical protein; Provisional
Probab=98.94 E-value=1.5e-08 Score=112.93 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+. +.+|+++++|++|+.+++++.|++.+|+++++|.||-|-....
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 45555666654 4689999999999988888999999998899999999965443
No 227
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.94 E-value=5.6e-09 Score=117.79 Aligned_cols=38 Identities=45% Similarity=0.748 Sum_probs=36.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
++|+|||||+|||+||.+|++.|++|+|+|+++.+||.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 68999999999999999999999999999999999984
No 228
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.93 E-value=7.9e-09 Score=109.07 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-cccCCCC-----CCCCccEE
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA-GLQDHIRLYL-CDYRQLP-----KSNKYDRI 700 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~-~d~~~~~-----~~~~fD~v 700 (864)
++.+|||||||+|.+...++.+ ++++++|+|+++.+++.|+++++.+ ++.++|++++ .|..++. +++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999888888776 7899999999999999999999999 7988999875 3333322 35689999
Q ss_pred EEchhhhhhChhhH---HHHHHH----------------HHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCC
Q 002928 701 ISCEMIEAVGHDYM---EEFFGC----------------CESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGG 761 (864)
Q Consensus 701 ~s~~~~~~~~~~~~---~~~l~~----------------~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 761 (864)
+|+-.++.-..+.. .+-.++ ..+++.+||.+.+........ ..+.....|+..-+ +
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~~~gwftsmv---~ 268 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAKQVLWFTSLV---S 268 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHhhCcEEEEEe---e
Confidence 99988765433211 111121 234556777765533222221 11111122221111 3
Q ss_pred CCCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 762 CLPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 762 ~~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
...++..+.+.|.+ .|..-..+..+
T Consensus 269 kk~~l~~l~~~L~~-~~~~~~~~~e~ 293 (321)
T PRK11727 269 KKENLPPLYRALKK-VGAVEVKTIEM 293 (321)
T ss_pred ccCCHHHHHHHHHH-cCCceEEEEEE
Confidence 45678888888886 78854444443
No 229
>PRK03612 spermidine synthase; Provisional
Probab=98.93 E-value=4e-09 Score=120.71 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcccCCCC--CCCCcc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMK--VKEA---GL-QDHIRLYLCDYRQLP--KSNKYD 698 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~--~~~~---~l-~~~v~~~~~d~~~~~--~~~~fD 698 (864)
+++.+|||||||+|..+..++++++ .+|+++|+++++++.++++ .... .+ .++++++.+|.++.- .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998754 7999999999999999983 3221 12 248999999987743 347899
Q ss_pred EEEEchhhhhhCh---hhHHHHHHHHHhccccCcEEEEEE
Q 002928 699 RIISCEMIEAVGH---DYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 699 ~v~s~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+|++.......+. -.-.+++++++++|||||.++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999854322211 123568999999999999999865
No 230
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.93 E-value=8.6e-09 Score=104.99 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL- 691 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~- 691 (864)
-+.+..++... ...+|||||+++|..++++|+. ++++|+++|.+++..+.|++.++..|+.++|+++.+|+.+.
T Consensus 68 g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 68 GQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 34444555444 4459999999999999999986 47899999999999999999999999999999999998664
Q ss_pred C---C----CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 692 P---K----SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 692 ~---~----~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+ . .++||.|+.-.- .+++..+|+.+.++|+|||.+++..+.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 2 1 268999997633 346789999999999999999986544
No 231
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.92 E-value=4.4e-08 Score=111.42 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCe-EEEEEC---CCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEG-RIEIRG---DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~-~~V~~~---~G~--~~~ad~VV~A~~~~~ 271 (864)
...+++.|++.+++.| ++|+++++|++|+..+++ |.|++. +|+ +++|++||+|+..+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 3589999999998887 799999999999886554 777643 353 689999999988765
No 232
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.92 E-value=2e-08 Score=112.21 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+. |++++++++|++|+.++++++|++.+|++++||.||.|.+... +.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 6778888888774 9999999999999988888999998888899999999977554 334443
No 233
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.91 E-value=1e-08 Score=115.46 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+++.|++|+.+++|++++.+++++.|++.+|++++||.||.|..... +.+.++
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 56667778887789999999999999998888999999988899999999966544 444444
No 234
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.91 E-value=1.3e-08 Score=113.60 Aligned_cols=55 Identities=24% Similarity=0.207 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEEC-CCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRG-DDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~-~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+++.+.+ ++++.+++|+.++.+++.+.|+.. +|++++||.||-|=...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 67788888888777 899999999999999999888888 99899999999995433
No 235
>PRK01581 speE spermidine synthase; Validated
Probab=98.91 E-value=1.2e-08 Score=107.75 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHH--H---HHcCC-CCCeEEEEcccCCCC--CCCCcc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMK--V---KEAGL-QDHIRLYLCDYRQLP--KSNKYD 698 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~--~---~~~~l-~~~v~~~~~d~~~~~--~~~~fD 698 (864)
....+||+||||.|..+..+++.+ ..+|++||+++++++.|++. + ....+ .++++++.+|+.+.- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345699999999999999998873 47999999999999999962 1 11122 459999999988743 457899
Q ss_pred EEEEchhh---hhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 699 RIISCEMI---EAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 699 ~v~s~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+|++...- .....-.-.++++.+++.|+|||.++++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99987421 11111233678999999999999999864
No 236
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.90 E-value=3.2e-08 Score=110.56 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC------C--cEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD------D--FQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~------G--~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+-+.|.+.+.+.|++++.+ .|+++..+++++.|++.+ | .+++||.||.|..... +.+.++
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 34555777777779999765 699998888888777653 2 3689999999976543 333343
No 237
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.90 E-value=2.8e-08 Score=109.05 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQ 292 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~ 292 (864)
...++..|++.+.++|++|+.+++|++|+.+++++ .|.|.+| ++.||+||+|+.++... +.+ .+ +....
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~--~~------~~~~~ 205 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLP--LP------LRPVR 205 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh-ccc--CC------ccccC
Confidence 36899999999999999999999999999888876 5777777 89999999999887543 333 10 00111
Q ss_pred eeeceEEEecC-CC--CCCCCcCCcccceecc-CCCCceEEEEecccc-cc------CccCCCCeEEEcCCCCCCcceee
Q 002928 293 YVYSDIFLHRD-KN--FMPRNPAAWSAWNFLG-STGGKVCLTYWLNVV-QN------IEETRLPFLVTLNPDHTPEHTLF 361 (864)
Q Consensus 293 ~~~~~~~l~~d-~~--~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~------l~~~~~~~~~~l~p~~~~~~~~~ 361 (864)
...+.+... .. -.|......+...|.. .++++..+....... .+ ..+.+.+.+..++|......+..
T Consensus 206 --g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~ 283 (337)
T TIGR02352 206 --GQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLE 283 (337)
T ss_pred --ceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHH
Confidence 011111111 00 0111111112223332 233444443211100 00 00011222334566655555555
Q ss_pred eEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccc
Q 002928 362 KWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 362 ~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
.|....|.-. +..+.+......+|+|++.++.|+|+ ..+...|+.+|+.|+|.
T Consensus 284 ~~~g~r~~t~----D~~piig~~~~~~~~~~~~g~~g~G~-~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 284 TWAGLRPGTP----DNLPYIGEHPEDRRLLIATGHYRNGI-LLAPATAEVIADLILGK 336 (337)
T ss_pred heecCCCCCC----CCCCEeCccCCCCCEEEEcccccCce-ehhhHHHHHHHHHHhcC
Confidence 6665444211 22233333334579999999999999 99999999999999874
No 238
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.89 E-value=3.1e-08 Score=114.00 Aligned_cols=57 Identities=14% Similarity=-0.146 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---Cc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---DF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G~--~~~ad~VV~A~~~~~ 271 (864)
..++..+++.+.++|++|+.+++|++|..+++.|.|++.+ |+ +++|+.||.|+.++.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 5778888888899999999999999998888778776653 43 689999999998764
No 239
>PRK11445 putative oxidoreductase; Provisional
Probab=98.89 E-value=6.5e-08 Score=106.38 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=44.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVD 74 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~ 74 (864)
+||+|||||++|+++|+.|+++ ++|+|+|+++.++-. |.....|. .-.++..++++++|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~-------~~~~~~g~-----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTE-------GFSKPCGG-----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccc-------cccCcCcC-----ccCHHHHHHHHHcCCC
Confidence 5899999999999999999999 999999998754310 11101121 1255677888999885
No 240
>PRK05868 hypothetical protein; Validated
Probab=98.88 E-value=3.4e-08 Score=109.34 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.|.+.+ ..|++++++++|++|+.++++++|++++|++++||.||-|-...
T Consensus 107 L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 107 LVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred HHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 444444433 34899999999999988888899999999899999999995433
No 241
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=1e-08 Score=103.12 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
-.+..|||+|||+|.++..+|+....+|.+|+.|+ |.++|++.++.+.+.++|+++.+.++++..+++.|+|||-.|-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 46789999999999999999998446899999875 99999999999999999999999999988668999999987655
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.+-.+...+-.-..++.|||.|.++=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 54334334444456799999999864
No 242
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=111.95 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=131.9
Q ss_pred HHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc
Q 002928 572 QARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT 651 (864)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 651 (864)
...+.++..|+...++|..-++..++.+.- + +....++.-.+.-....-+...+++.+++|+|||.|....+++...
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~--e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~ 132 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFGRI-P--EGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK 132 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhccCc-c--chhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc
Confidence 567789999999999999888877655332 2 2223333322222222333456888899999999999999999987
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcE
Q 002928 652 GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGL 730 (864)
Q Consensus 652 ~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 730 (864)
.+.++|+|.++.++..+.......++.++-.++.+|+.+.| ++..||.+.+.++.+|. .+....+++++|++||||+
T Consensus 133 ~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~--~~~~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 133 KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA--PDLEKVYAEIYRVLKPGGL 210 (364)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccC--CcHHHHHHHHhcccCCCce
Confidence 79999999999999999998888888878888999999998 88999999999999999 5689999999999999999
Q ss_pred EEEEEecCCC
Q 002928 731 LLLQFISVPD 740 (864)
Q Consensus 731 l~i~~~~~~~ 740 (864)
++..++....
T Consensus 211 ~i~~e~i~~~ 220 (364)
T KOG1269|consen 211 FIVKEWIKTA 220 (364)
T ss_pred EEeHHHHHhh
Confidence 9997765433
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.87 E-value=1.7e-08 Score=96.84 Aligned_cols=127 Identities=17% Similarity=0.306 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCC-CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKARVS-KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
+-++.+++.+.-. ++..|-|+|||.+.++..+.. +.+|...|+-.. +-.+..+|+.++| +
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCC
Confidence 3456778877644 457999999999999966542 468999999641 2246789999999 8
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAM 773 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l 773 (864)
+++.|++|.+.++.- .|+..+++|..|+|||||.|.|.++... +.+.....+.+
T Consensus 120 ~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-----------------------f~~~~~F~~~~ 173 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR-----------------------FENVKQFIKAL 173 (219)
T ss_dssp TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHH
T ss_pred CCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc-----------------------CcCHHHHHHHH
Confidence 899999999877654 3899999999999999999999886532 12466777777
Q ss_pred hcCCCcEEEEEEec
Q 002928 774 TSSSRLCVEDLENI 787 (864)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (864)
.. .||++...+.-
T Consensus 174 ~~-~GF~~~~~d~~ 186 (219)
T PF05148_consen 174 KK-LGFKLKSKDES 186 (219)
T ss_dssp HC-TTEEEEEEE--
T ss_pred HH-CCCeEEecccC
Confidence 75 89999886543
No 244
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.87 E-value=4.7e-08 Score=109.47 Aligned_cols=61 Identities=10% Similarity=-0.146 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+++.| ++++ ++.|++|+.+++++.|++.+|++++||.||.|..... +.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 56777888888777 8888 9999999888888999998887899999999976543 334443
No 245
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.87 E-value=1.2e-07 Score=104.39 Aligned_cols=252 Identities=14% Similarity=0.160 Sum_probs=139.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC---------------------CeeeccceeeccCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID---------------------GVDLDLCFMVFNRVT 60 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~---------------------G~~~d~G~~~~~~~~ 60 (864)
||+|+|.|+.-.-.|..|++.|.+|+.+|+++.-||..+|.... .+.+|+.+..+. .
T Consensus 6 DviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~--a 83 (438)
T PF00996_consen 6 DVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY--A 83 (438)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE--T
T ss_pred eEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh--c
Confidence 89999999999999999999999999999999999999997631 255666666652 3
Q ss_pred chHHHHHHHHcCCCcccc--cceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHH--HHHHHHHhHHHHHHHHHHhh
Q 002928 61 YPNMMEFFESLGVDMEIS--DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFW--QMLREIIKFNDDVLSYLEDL 136 (864)
Q Consensus 61 ~~~~~~l~~~lG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 136 (864)
...+.+++-+-++..... .........+++....+. .....++...+ ..-+.+.+|......+-...
T Consensus 84 ~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~---------sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~ 154 (438)
T PF00996_consen 84 RGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPC---------SREDVFKSKLLSLFEKRRLMKFLKFVANYEEDD 154 (438)
T ss_dssp TSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--S---------SHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTB
T ss_pred cCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCC---------CHHHhhcCCCccHHHHHHHHHHHHHHhhcccCC
Confidence 556667776666654321 122222224444433322 11111111111 11223344444333322111
Q ss_pred c-cCCcC-CCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHh-hcCCCccCCCCcEEEecCC
Q 002928 137 E-NNADI-DRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCR-NHHALQIFGRPQWLTVRSR 213 (864)
Q Consensus 137 ~-~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gG 213 (864)
. ..... ....++.+++...++++...+.+.+.+ +++. +...+ ..|+...+.-+. --..+..++...+.+|..|
T Consensus 155 ~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~-~~~~~-~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG 230 (438)
T PF00996_consen 155 PSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSL-DDSYL-TEPAREGLERIKLYLSSLGRYGKSPFLYPLYG 230 (438)
T ss_dssp GGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SS-SSGGG-GSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-
T ss_pred cchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhcc-Ccccc-cccHHHHHHHHHHHHHHHhccCCCCEEEEccC
Confidence 1 11111 135789999999989887666554333 1222 11111 223332222111 1112344566688899999
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eE-EEEECCCcEEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.++++|+++|...=.|+...+|++|.+|..+.+ ++ .|. .+|+++.|++||.. |.+
T Consensus 231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~d-psy 287 (438)
T PF00996_consen 231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGD-PSY 287 (438)
T ss_dssp TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEE-GGG
T ss_pred CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEEC-Ccc
Confidence 999999999999888999999999999988654 44 354 48889999999954 444
No 246
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=1.7e-08 Score=113.92 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+. .+.++++++|++|+..+++|.|++++|++++||.||.|.....
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 56777777775 4578999999999988888999999998899999999966554
No 247
>PRK06834 hypothetical protein; Provisional
Probab=98.86 E-value=2e-08 Score=114.79 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+-+.|.+.+++.|++|+.+++|++|+.+++++.|++.+|++++||.||.|..... ..+.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 45556777777779999999999999999899999888888899999999976544 333443
No 248
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.86 E-value=4.3e-08 Score=99.30 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=32.4
Q ss_pred hhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccc
Q 002928 383 HIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 383 ~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
.++...|+|+|-+|+|+|+ ..+...|+..||.|+...
T Consensus 447 ~HP~y~Nly~atGFsghGv-qqs~avgRAiaElIldG~ 483 (509)
T KOG2853|consen 447 EHPLYTNLYMATGFSGHGV-QQSPAVGRAIAELILDGA 483 (509)
T ss_pred CCcceeeeeeeecccccch-hcchHHHHHHHHHHhcCc
Confidence 3445679999999999999 999999999999998655
No 249
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.86 E-value=2.5e-08 Score=112.35 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++|+.+++++.|++.+|++++||.||.|.....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 67778888888889999999999999998889999988888899999999976543
No 250
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.86 E-value=7.8e-08 Score=107.40 Aligned_cols=36 Identities=39% Similarity=0.641 Sum_probs=33.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLG 36 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~G 36 (864)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 251
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.86 E-value=4.8e-08 Score=112.44 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE---EEEECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR---IEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~---~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+++.|.+.+++.|++|+++++|++|..+++++ .+...+|+ ++.|+.||+|+..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 3688899999999999999999999998776654 34444443 588999999997653
No 252
>PRK06184 hypothetical protein; Provisional
Probab=98.85 E-value=3.1e-08 Score=114.55 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEE---CCCcEEecCEEEEccChHH-HHHhhc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIR---GDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~---~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
+-+.|.+.+.+.|++|+++++|++|+.+++++++++ .++++++||.||.|..... ..+.++
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 445567777777999999999999999888887776 5666899999999976655 334444
No 253
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=3.3e-08 Score=111.56 Aligned_cols=113 Identities=15% Similarity=0.244 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 692 (864)
...++.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.+. +
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHH
Confidence 345566777777788899999999999999999987 679999999999999999999988875 899999998763 2
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.+.+||+|+....=.-+ ...+++.+.+ ++|++.++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 23579999976432111 2455565554 7898877773
No 254
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.84 E-value=3.6e-08 Score=110.52 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+-+.|.+.+.+. |++++.+++|++++.+++++.|++.+|++++||.||.|.....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 4556677776665 8999999999999988888999888888899999999976554
No 255
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.84 E-value=3.4e-08 Score=90.09 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=114.5
Q ss_pred hhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEE
Q 002928 578 SRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKY 655 (864)
Q Consensus 578 ~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v 655 (864)
+..+|..-.|++-|.+...+-.+-+ ++. .-..+.|...++...|.-|||+|.|+|.++..+.++ ....+
T Consensus 6 ~~~f~~e~~F~k~wi~~PrtVGaI~-PsS--------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L 76 (194)
T COG3963 6 ARKFDEEISFFKGWIDNPRTVGAIL-PSS--------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESL 76 (194)
T ss_pred hhhHHHHHHHHHHHhcCCceeeeec-CCc--------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccce
Confidence 4445555578888887654442222 111 123357888888999999999999999999999998 55689
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCc
Q 002928 656 TGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHG 729 (864)
Q Consensus 656 ~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG 729 (864)
+++|.|++.+...+++.. .++++.+|+.++. .+..||.|+|.-.+-.++.....++++++...|.+||
T Consensus 77 ~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg 150 (194)
T COG3963 77 TAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG 150 (194)
T ss_pred EEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999999988753 5678999987765 4678999999998888888778899999999999999
Q ss_pred EEEEEEec
Q 002928 730 LLLLQFIS 737 (864)
Q Consensus 730 ~l~i~~~~ 737 (864)
.++--..+
T Consensus 151 ~lvqftYg 158 (194)
T COG3963 151 PLVQFTYG 158 (194)
T ss_pred eEEEEEec
Confidence 99876655
No 256
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.84 E-value=9.1e-08 Score=107.97 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhh-cCceEEeCcceEEEEEe-CCeEEEE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLES-LGCQIKTGCEVRSVLQY-GEGRIEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~-~G~~I~~~~~V~~I~~~-~~~~~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.++|++.+.+ .|++|+++++|+.|++. +++|+|+ +.+|+ +++||.||+|+.++.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 4788999998864 48999999999999887 6778776 44452 689999999988775
No 257
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.83 E-value=9e-08 Score=106.79 Aligned_cols=55 Identities=9% Similarity=-0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 217 YVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 217 l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
+-..|.+++.+. |++|+.+++|++++.++++++|++++|++++||.||.|.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 444555555443 6899999999999998888999999999999999999976554
No 258
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=2.2e-08 Score=96.85 Aligned_cols=106 Identities=23% Similarity=0.428 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHc------------------------------
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEA------------------------------ 675 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~------------------------------ 675 (864)
...+..+|||||-.|.++..+|+..++ .|.|+||++..++.|++.++..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 345679999999999999999998554 6999999999999999876521
Q ss_pred ----CCCCCeEEEEc-------ccCCCCCCCCccEEEEchhhhhh----ChhhHHHHHHHHHhccccCcEEEE
Q 002928 676 ----GLQDHIRLYLC-------DYRQLPKSNKYDRIISCEMIEAV----GHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 676 ----~l~~~v~~~~~-------d~~~~~~~~~fD~v~s~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.+++++.+... |+.++ ....||+|+|..+-.++ +++.+..+|+++.++|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 11122222222 22222 24579999987654333 677899999999999999999998
No 259
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.83 E-value=3.3e-08 Score=111.84 Aligned_cols=56 Identities=16% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECC-C--cEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGD-D--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~-G--~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+. |++++++++|++|+.+++++.|++.+ + .+++||.||.|.....
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 4666777777665 69999999999999888888887753 2 3699999999965443
No 260
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.82 E-value=7.6e-08 Score=108.56 Aligned_cols=33 Identities=48% Similarity=0.729 Sum_probs=31.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKED 33 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~ 33 (864)
+||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999999999874
No 261
>PRK08013 oxidoreductase; Provisional
Probab=98.82 E-value=4.8e-08 Score=109.60 Aligned_cols=62 Identities=8% Similarity=-0.147 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+-+.|.+.+.+. |++|+.+++|++|+.+++++.|++.+|++++||.||-|-..+. +.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4566677777665 7999999999999988888999888998999999999965443 333443
No 262
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.82 E-value=1.6e-08 Score=104.48 Aligned_cols=105 Identities=26% Similarity=0.327 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
+-.+..|||+|||+|.++...|+....+|++||.|. +++.|++.+..+++.+.|+++.+.++++. |.++.|+|+|-+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 567899999999999999999998445899999887 55999999999999989999999999887 5689999999887
Q ss_pred hhhhChh-hHHHHHHHHHhccccCcEEE
Q 002928 706 IEAVGHD-YMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 706 ~~~~~~~-~~~~~l~~~~~~LkpgG~l~ 732 (864)
-+.+=.+ -++.++-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 6655322 35666777789999999975
No 263
>PLN02672 methionine S-methyltransferase
Probab=98.82 E-value=2.5e-08 Score=119.95 Aligned_cols=106 Identities=23% Similarity=0.399 Sum_probs=83.7
Q ss_pred CCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcccCCCCC
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGL---------------QDHIRLYLCDYRQLPK 693 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l---------------~~~v~~~~~d~~~~~~ 693 (864)
+.+|||+|||+|.+++.++++ +..+|+|+|+|+++++.|+++++.+++ .++|+++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 569999999999999999988 568999999999999999999987643 2579999999876542
Q ss_pred --CCCccEEEEchh--------------hhhh----------------------ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 694 --SNKYDRIISCEM--------------IEAV----------------------GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 694 --~~~fD~v~s~~~--------------~~~~----------------------~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..+||+|||+-. .+|- |-.-+.++++++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 237999999842 1110 11124677889999999999999843
No 264
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2.2e-08 Score=105.31 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+.+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 456678888889999999999999999999999987 789999999999999999998877755689999999987653
Q ss_pred CCccEEEEchhhhh
Q 002928 695 NKYDRIISCEMIEA 708 (864)
Q Consensus 695 ~~fD~v~s~~~~~~ 708 (864)
..||.|+++-.+.-
T Consensus 100 ~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 PYFDVCVANVPYQI 113 (294)
T ss_pred cccCEEEecCCccc
Confidence 36899998765543
No 265
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.81 E-value=5.2e-08 Score=110.82 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC-Ce---EEEEECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EG---RIEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~---~~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+++++|++|..++ ++ +.+.+.+++ .+.++.||+|+....
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 4688999999999999999999999998854 43 334444553 368999999988653
No 266
>PRK09126 hypothetical protein; Provisional
Probab=98.81 E-value=2.3e-08 Score=112.08 Aligned_cols=55 Identities=15% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHHHHHHh-hcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 217 YVDKVIELLE-SLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 217 l~~~La~~~~-~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
+.+.|.+.+. ..|++|+.+++|++++.+++.+.|++++|++++||.||.|.....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 3344444443 358999999999999988888889888888999999999976543
No 267
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.81 E-value=2.4e-08 Score=111.69 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=46.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCC--CCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL--GGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~--GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.||+|||||++||++|+.|+++|++|+|+|+++.. .+ ..++..+ .++..++++++|+....
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~------------~~~a~~l----~~~~~~~l~~lGl~~~l 65 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG------------RIRAGVL----EQGTVDLLREAGVGERM 65 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc------------ccceeEE----CHhHHHHHHHcCChHHH
Confidence 48999999999999999999999999999998742 11 1122223 45667888999985433
No 268
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.81 E-value=7e-08 Score=107.23 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+-+.|.+++.+.+ ++++.+++|++|+.+++++.|++.++ +++||.||.|-....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 57777888877765 89999999999998888899988777 899999999955443
No 269
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.81 E-value=3e-08 Score=114.18 Aligned_cols=57 Identities=14% Similarity=-0.163 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC----cEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD----FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G----~~~~ad~VV~A~~~~~ 271 (864)
..++..++..+.++|++++.+++|++|+.+++.+.|++.++ .+++|+.||.|+.++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 47888888889999999999999999998887787777554 2589999999998764
No 270
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.81 E-value=5.4e-08 Score=94.65 Aligned_cols=109 Identities=21% Similarity=0.378 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcccCC-CC----CCCCc
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG--LQDHIRLYLCDYRQ-LP----KSNKY 697 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~-~~----~~~~f 697 (864)
...++.+|||+|||+|..++.++.. ...+|+.+|.++ .++..+.+++.++ ...++.+...|..+ .. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3567889999999999999999997 678999999999 9999999998876 56688999988755 21 34689
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+|+...+++.- +..+.+++.+.++|+|+|.+++....
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999999876 78899999999999999997775533
No 271
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.81 E-value=2e-08 Score=100.73 Aligned_cols=104 Identities=26% Similarity=0.301 Sum_probs=89.1
Q ss_pred CeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEchh
Q 002928 631 HEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNKYDRIISCEM 705 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~v~s~~~ 705 (864)
..+||||||.|.+...+|++ |...++|||+....+..|.+++.+.++. |+.+++.|+..+- ++++.|.|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999999 8899999999999999999999999987 9999999987653 5669999999875
Q ss_pred hhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 706 IEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 706 ~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
=-|...+ -.+.+++.+.+.|||||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4333111 13688999999999999999854
No 272
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.80 E-value=4.7e-08 Score=101.84 Aligned_cols=118 Identities=24% Similarity=0.371 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC-C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC-DYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~-~ 693 (864)
+..+.+.....+++|..|||=-||||++++.+.-. |++++|+|++..|++-|+.+++..+++ ...+... |+.++| +
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCC
Confidence 34456667778999999999999999999998886 999999999999999999999998876 4555555 999999 5
Q ss_pred CCCccEEEEchhhh------hhC-hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 694 SNKYDRIISCEMIE------AVG-HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 694 ~~~fD~v~s~~~~~------~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+.++|.|++-...- -.. ++-+.++|+.+.++||+||++++..
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 55799999864321 111 2347889999999999999999844
No 273
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=98.34 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=102.1
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcccCCCC---CCCCc
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGL-QDHIRLYLCDYRQLP---KSNKY 697 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l-~~~v~~~~~d~~~~~---~~~~f 697 (864)
.....+.|.+|||...|-|..++..+++ |+ +|..++.++..++.|+-+-=..++ +.+|+++.+|+.++- .|++|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445678999999999999999999998 87 999999999999988754211121 236899999976653 67899
Q ss_pred cEEEEch-hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 698 DRIISCE-MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 698 D~v~s~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
|+|+-.. -|.+.++=+-.++.++++|+|||||+++-.. ..|...+.. -+ -...+.+.|.+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv-G~Pg~ryrG---------------~d--~~~gVa~RLr~- 267 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV-GNPGKRYRG---------------LD--LPKGVAERLRR- 267 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCCCccccc---------------CC--hhHHHHHHHHh-
Confidence 9999643 2334443466889999999999999998633 333322211 11 13456677776
Q ss_pred CCcEEEEE
Q 002928 777 SRLCVEDL 784 (864)
Q Consensus 777 ~gf~v~~~ 784 (864)
.||++++.
T Consensus 268 vGF~~v~~ 275 (287)
T COG2521 268 VGFEVVKK 275 (287)
T ss_pred cCceeeee
Confidence 89997654
No 274
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=3.6e-08 Score=96.91 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchH----HHHHHHHh----c--CCEEEEEeCCHHHHHHHHHHH-------
Q 002928 610 LEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGT----LAIEIVKQ----T--GCKYTGITLSEEQLKYAEMKV------- 672 (864)
Q Consensus 610 l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~----~~~~la~~----~--~~~v~gid~s~~~~~~a~~~~------- 672 (864)
++.-+...+..+++.....+.-+|+..||++|. +++.+.+. . ..+|+|+|+|+.+++.|++-.
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 333333333333433333456799999999994 44555551 1 369999999999999998621
Q ss_pred -------HH-----cC--------CCCCeEEEEcccCC-CCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEE
Q 002928 673 -------KE-----AG--------LQDHIRLYLCDYRQ-LPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLL 731 (864)
Q Consensus 673 -------~~-----~~--------l~~~v~~~~~d~~~-~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 731 (864)
++ .+ +..+|+|...|..+ .+..+.||+|+|.+++-++..+...++++.+++.|+|||.|
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEE
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEE
Confidence 00 00 12579999999888 44678999999999999999888999999999999999999
Q ss_pred EE
Q 002928 732 LL 733 (864)
Q Consensus 732 ~i 733 (864)
++
T Consensus 172 ~l 173 (196)
T PF01739_consen 172 FL 173 (196)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 275
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.79 E-value=7e-08 Score=108.05 Aligned_cols=56 Identities=13% Similarity=-0.087 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.+...+++++|++++.+++++.|++.+|++++||.||.|.....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 56677777777766555899999999998899999998888899999999976543
No 276
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.78 E-value=5e-07 Score=98.49 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=53.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhC----CCeEEEEecCCCCCCcceeEee--CCeeeccceeeccCCCchHHHHHHHHc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVTI--DGVDLDLCFMVFNRVTYPNMMEFFESL 71 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~----G~~V~vlEa~~~~GG~~~s~~~--~G~~~d~G~~~~~~~~~~~~~~l~~~l 71 (864)
+++-|||+|+|+|+||.+|-+. |-+|+|||+.+..||...+... .|+.+..|-.. ...+..+++|++.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~--~~~~eclwdLls~I 77 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM--EFHYECLWDLLSSI 77 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc--cchhHHHHHHHHhC
Confidence 4678999999999999999886 5699999999999998866554 57877444322 23466777888875
No 277
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.78 E-value=2e-07 Score=93.84 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~v 700 (864)
...-+||||.||.|.....+... +. .+|.-.|.|+..++..++.+++.|+.+-++|.++|+.+.. .+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999999888877 43 6899999999999999999999999977799999987753 24567999
Q ss_pred EEchhhhhhChhh-HHHHHHHHHhccccCcEEEEEE
Q 002928 701 ISCEMIEAVGHDY-MEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 701 ~s~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+.++.+|.+++.+ ....++.+.+++.|||+++...
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999999865 5557999999999999999843
No 278
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=5.1e-08 Score=107.15 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KS 694 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~ 694 (864)
.++.+.+.+...++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|+++++..++. +++++.+|+.+.. ..
T Consensus 221 l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~ 298 (374)
T TIGR02085 221 LYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQM 298 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcC
Confidence 3444455554445679999999999999999976 789999999999999999999998885 8999999987653 22
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.+||+|++.-.-..+. ..+++.+. .++|++.+++++
T Consensus 299 ~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 299 SAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 5699999986644332 34445554 378999888853
No 279
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.78 E-value=6.2e-08 Score=94.67 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCK---------YTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~ 685 (864)
.....|+.....++++.|||--||+|.+.+.++.. .+.. +.|+|+++++++.|+++++..++.+.|.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 34456777778899999999999999999998876 4444 8899999999999999999999988999999
Q ss_pred cccCCCC-CCCCccEEEEchhhhh-hC-----hhhHHHHHHHHHhccccCcEEE
Q 002928 686 CDYRQLP-KSNKYDRIISCEMIEA-VG-----HDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 686 ~d~~~~~-~~~~fD~v~s~~~~~~-~~-----~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
.|+.+++ .++++|.|+++..+.. ++ .+-+..+++++.++|+|...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999 7789999999865432 11 2345678899999999933333
No 280
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.78 E-value=2e-08 Score=101.26 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcccCC--
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----HIRLYLCDYRQ-- 690 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~-- 690 (864)
+..++-..-.++++.++|+|||-|+-++..-+..-.+++|+||++..++.|++|.++..-.. .+.|+.+|...
T Consensus 106 IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 106 IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 33444444457899999999999999887776533589999999999999999987533221 37899999533
Q ss_pred ----CC-CCCCccEEEEchhhhhh--ChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 691 ----LP-KSNKYDRIISCEMIEAV--GHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 691 ----~~-~~~~fD~v~s~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++ .+.+||+|-|.+++|+. ..+..+.+++++.++|||||.++-+.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 22 23449999999888764 44678899999999999999999843
No 281
>PRK07045 putative monooxygenase; Reviewed
Probab=98.78 E-value=8.2e-08 Score=107.43 Aligned_cols=56 Identities=9% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhh-cCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLES-LGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.. .|++++++++|+.|+.++++ +.|++.+|+++++|.||.|.....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 355556666643 47999999999999887665 478888898999999999965544
No 282
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.77 E-value=6.2e-08 Score=101.01 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
.+.++.+++.+++.++.+|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++++|+.+++.
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc-
Confidence 456678888888889999999999999999999998 78999999999999999988754 2489999999998763
Q ss_pred CCccEEEEchhhh
Q 002928 695 NKYDRIISCEMIE 707 (864)
Q Consensus 695 ~~fD~v~s~~~~~ 707 (864)
..||.|+++-.+.
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 2589999987754
No 283
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.77 E-value=2.4e-08 Score=98.15 Aligned_cols=100 Identities=24% Similarity=0.397 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~ 705 (864)
.++|.+|||+.||.|.+++.+|+. .+++|+++|++|..++..+++++.+++.++|..+++|.+++...+.||.|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 578999999999999999999984 4788999999999999999999999999999999999999876789999999753
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
-. -..++..+.+++|+||.+.
T Consensus 179 ~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCcEEE
Confidence 22 2357788999999998864
No 284
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=7.3e-08 Score=109.73 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcC--ceEEeCcceEEEEEeCCeEEEEECC-CcEEecCEEEEccCh
Q 002928 216 SYVDKVIELLESLG--CQIKTGCEVRSVLQYGEGRIEIRGD-DFQRVYDGCIMAVHA 269 (864)
Q Consensus 216 ~l~~~La~~~~~~G--~~I~~~~~V~~I~~~~~~~~V~~~~-G~~~~ad~VV~A~~~ 269 (864)
...+.+.+.+++.| ++++.+++|+.|+..++++.|++.+ |..+.||+||+|+..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 34445566666666 7888999999999988899998865 467999999999875
No 285
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.76 E-value=1.4e-07 Score=105.94 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEE---CCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIR---GDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~---~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+. |++|+++++|++++.+++++.|++ .++++++||.||-|-....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 5666677777553 789999999999998888887766 3345799999999965544
No 286
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.76 E-value=1.1e-07 Score=107.09 Aligned_cols=61 Identities=8% Similarity=-0.070 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 217 YVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
+-+.|.+.+.+. |++|+.+++|++|+.+++++.|++.+|++++||.||.|..... +.+.++
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 444566666553 7999999999999988888999999998999999999976543 333343
No 287
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.76 E-value=8e-08 Score=108.66 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE---CCCc--EEecCEEEEccChHHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR---GDDF--QRVYDGCIMAVHAPDA 272 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~~ 272 (864)
+...+++.|.+.++++|++|+++++|+++..++++| .|.. .+|+ .+.|+.||+|+.....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456899999999999999999999999999998875 2332 3554 4789999999877643
No 288
>PRK07538 hypothetical protein; Provisional
Probab=98.76 E-value=1.3e-07 Score=106.68 Aligned_cols=59 Identities=32% Similarity=0.522 Sum_probs=44.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~ 75 (864)
|||+|||||++||++|+.|+++|++|+|+|+++.++- .| .|.. -.++..+.++++|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------~g----~gi~-----l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-------LG----VGIN-----LLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-------cC----ccee-----eCchHHHHHHHCCCHH
Confidence 7999999999999999999999999999999875421 01 1111 1455667778888754
No 289
>PLN02463 lycopene beta cyclase
Probab=98.75 E-value=1e-07 Score=107.02 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+-+.|.+.+.+.|++++ +++|++|+..++++.|++.+|++++||.||.|+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 455667777777799986 579999999888899999999889999999998654
No 290
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.75 E-value=3.4e-08 Score=103.81 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
..++.+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|++++|++.++++... ++++++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 45568888888889999999999999999999998 56999999999999999987642 48999999999887322
Q ss_pred -CccEEEEchhh
Q 002928 696 -KYDRIISCEMI 706 (864)
Q Consensus 696 -~fD~v~s~~~~ 706 (864)
.+|.|+++-.+
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 25899988654
No 291
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=5.1e-08 Score=95.17 Aligned_cols=122 Identities=20% Similarity=0.382 Sum_probs=93.7
Q ss_pred HHHHHHHcCCC-CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 618 VSLLIQKARVS-KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 618 ~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
++.+++.+... ....|-|+|||-+.++. .. ...|+..|+-+ .+-+++.+|++++| +++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec----------------CCCceeeccccCCcCccC
Confidence 46777777644 45688999999998876 22 35899999853 14577899999999 899
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhc
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTS 775 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~ 775 (864)
+.|++|.+.++. | .|+..++.+++|+|||||.+.|.++.. .+++...+..++..
T Consensus 228 svDvaV~CLSLM--g-tn~~df~kEa~RiLk~gG~l~IAEv~S-----------------------Rf~dv~~f~r~l~~ 281 (325)
T KOG3045|consen 228 SVDVAVFCLSLM--G-TNLADFIKEANRILKPGGLLYIAEVKS-----------------------RFSDVKGFVRALTK 281 (325)
T ss_pred cccEEEeeHhhh--c-ccHHHHHHHHHHHhccCceEEEEehhh-----------------------hcccHHHHHHHHHH
Confidence 999999876654 3 478999999999999999999987642 22455666777775
Q ss_pred CCCcEEEEEEe
Q 002928 776 SSRLCVEDLEN 786 (864)
Q Consensus 776 ~~gf~v~~~~~ 786 (864)
.||.+.+...
T Consensus 282 -lGF~~~~~d~ 291 (325)
T KOG3045|consen 282 -LGFDVKHKDV 291 (325)
T ss_pred -cCCeeeehhh
Confidence 7998876544
No 292
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.74 E-value=1.4e-07 Score=106.02 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHHhh-cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 217 YVDKVIELLES-LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 217 l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
+-+.|.+.+.+ .|++++++++|++++..++++.|++.+|.++++|.||.|.....
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 33445555544 37999999999999888888999998888899999999976543
No 293
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.72 E-value=6.9e-07 Score=93.14 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-E-EEEECC---------------CcEEecCEEEEc--cChHHHHHh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-R-IEIRGD---------------DFQRVYDGCIMA--VHAPDALRM 275 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~-~V~~~~---------------G~~~~ad~VV~A--~~~~~~~~l 275 (864)
..+++-|.+.+++.|++|+-+..+.++-.+.++ | .|.|.| |-++.|+.-|+| |..+...++
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 478888999999999999999999999887654 3 455532 226788988998 666666655
Q ss_pred hc
Q 002928 276 LG 277 (864)
Q Consensus 276 l~ 277 (864)
+.
T Consensus 263 ~k 264 (621)
T KOG2415|consen 263 IK 264 (621)
T ss_pred HH
Confidence 54
No 294
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.72 E-value=1.4e-07 Score=90.46 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCceEE-eCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 218 VDKVIELLESLGCQIK-TGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 218 ~~~La~~~~~~G~~I~-~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
.+.+.+.+ ..|++|. ...+|+.|+..++++.|.+++|..+.||+||+|+..
T Consensus 104 ~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 104 FDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 33344444 3354443 677999999999999999999999999999999863
No 295
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.72 E-value=2.7e-07 Score=108.23 Aligned_cols=57 Identities=7% Similarity=-0.047 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|+++++|++|..+++++. |. ..+|+ .+.|+.||+|+....
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 46788888888888999999999999988777652 22 23564 578999999998763
No 296
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.72 E-value=4.8e-07 Score=98.82 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCC--cEEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDD--FQRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G--~~~~ad~VV~A~~~~ 270 (864)
.++.+.|.+.++++|+++..+++|++++.++++++ |.|.++ .+++||+||+|+.+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 48999999999999999999999999998888875 555665 479999999998876
No 297
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.70 E-value=1e-07 Score=102.83 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=89.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----CCCCccEEEE
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQLP-----KSNKYDRIIS 702 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~v~s 702 (864)
|++|||+-|=||+++.++|.. |+ +||+||+|...++.|+++++-+|++ +++.++++|+.++- ...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 999999999999999999997 87 9999999999999999999999984 56899999986653 3459999998
Q ss_pred chhhh-------hhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 703 CEMIE-------AVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 703 ~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
...-. .-..+++..++..+.++|+|||.+++.+..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 53211 111257888999999999999999996644
No 298
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.70 E-value=4.1e-08 Score=108.42 Aligned_cols=56 Identities=23% Similarity=0.114 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---Cc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---DF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G~--~~~ad~VV~A~~~~~ 271 (864)
.+-+.|.+.+++.|++|+++++|..++.+++++.+.+.+ |+ +++||.||-|-....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 466678888888899999999999999998887655433 32 689999999954443
No 299
>PLN02661 Putative thiazole synthesis
Probab=98.70 E-value=3e-07 Score=97.52 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=34.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhC-CCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA-GVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~-G~~V~vlEa~~~~GG 37 (864)
.||+|||||++||+||++|+++ |++|+|+|++..+||
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 3899999999999999999986 899999999999887
No 300
>PRK08244 hypothetical protein; Provisional
Probab=98.70 E-value=1.4e-07 Score=109.04 Aligned_cols=61 Identities=26% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC--CC-cEEecCEEEEccChHH-HHHhhc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG--DD-FQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~--~G-~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
+-+.|.+.+++.|++|+.+++|++++.++++++|+.. +| ++++||.||.|..... +.+.++
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 4445666666679999999999999988888776553 45 4799999999975543 344443
No 301
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.70 E-value=2.6e-07 Score=103.16 Aligned_cols=63 Identities=27% Similarity=0.374 Sum_probs=46.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.||+|||||++||++|+.|+++|++|+|+|+++..-- . -+.++..+ .++..++++++|+....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~--~--------~~~~a~~l----~~~~~~~L~~lGl~~~l 65 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV--L--------GRIRAGVL----EQGTVDLLREAGVDERM 65 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc--C--------CceeEeeE----CHHHHHHHHHCCChHHH
Confidence 4899999999999999999999999999999874100 0 01223223 45577889999986543
No 302
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-07 Score=90.44 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=87.2
Q ss_pred HHHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCCeE
Q 002928 617 KVSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEMKVKEAG--------L-QDHIR 682 (864)
Q Consensus 617 ~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~--------l-~~~v~ 682 (864)
+...+++.|. ++||.+.||+|+|+|.++..++.. +|..++|||.-++.++++++++.+.- + ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3446666666 789999999999999999888865 45556999999999999999887533 1 24688
Q ss_pred EEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 683 LYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 683 ~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++++|.+... +..+||+|.+-.. -.+..+++-..|+|||++++-
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 9999998876 6789999987622 345556777889999999983
No 303
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.69 E-value=4e-07 Score=106.15 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=46.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.||+|||||++||++|+.|+++|++|+|+|+++.++...+ +. . ..+...++++++|+....
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~r-----------a~-~----l~~~~~~~L~~lGl~~~l 71 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPR-----------AV-G----IDDEALRVLQAIGLADEV 71 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCc-----------ee-e----eCHHHHHHHHHcCChhHH
Confidence 4899999999999999999999999999999876543111 11 1 145667888998876543
No 304
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.68 E-value=1.8e-07 Score=104.72 Aligned_cols=55 Identities=5% Similarity=-0.229 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++++ ++.|..++.. ++.+.|++.+|++++|+.||.|++...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 566777777777788885 6689998877 566888888888899999999988764
No 305
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.68 E-value=7.7e-08 Score=100.09 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=83.3
Q ss_pred CCeEEEEcCCchH----HHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHH------------------HH--------
Q 002928 630 GHEVLEIGCGWGT----LAIEIVKQT-----GCKYTGITLSEEQLKYAEMKV------------------KE-------- 674 (864)
Q Consensus 630 ~~~vLDiGcG~G~----~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~------------------~~-------- 674 (864)
.-+|+..||.+|. +++.+.+.. ..+|+|+|+|+.+++.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 444444421 368999999999999998741 00
Q ss_pred ----cCCCCCeEEEEcccCCCC--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 675 ----AGLQDHIRLYLCDYRQLP--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 675 ----~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
..+...|+|.+.|+.+.+ +.+.||+|+|.+++.|+.++...++++++.+.|+|||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 013357899999987744 35889999999999999988899999999999999999988
No 306
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.68 E-value=1.6e-07 Score=107.52 Aligned_cols=55 Identities=20% Similarity=0.079 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+..++++.+++.+|+++++|.||+|+..
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 4678888999999999999999999998877778888888888999999999764
No 307
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.67 E-value=9.7e-08 Score=108.17 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=48.5
Q ss_pred EecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEe--CCeE-EEEEC-CCcEEecCEEEEccChH
Q 002928 209 TVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQY--GEGR-IEIRG-DDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 209 ~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~--~~~~-~V~~~-~G~~~~ad~VV~A~~~~ 270 (864)
++.++...+++.|.+.+++.|++|+++++|++|..+ ++++ .|.+. ++.++.|+.||+|+..+
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 344566789999999999999999999999999876 3444 34433 33478999999999865
No 308
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.67 E-value=4.6e-07 Score=106.44 Aligned_cols=58 Identities=9% Similarity=-0.178 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEe--CCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQY--GEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~--~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
...++..|++.+.++|++|+.+++|++|..+ ++++ .|++ .+|+ ++.||.||+|+.+..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4589999999999999999999999999876 3544 3333 2343 589999999998774
No 309
>PRK06126 hypothetical protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=111.09 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEEC---CCc--EEecCEEEEccChHH-HHHhhc
Q 002928 217 YVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRG---DDF--QRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 217 l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~---~G~--~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
+-+.|.+.+.+. |++|+++++|++++.+++++++++. +|+ ++++|.||.|..... ..+.++
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 444566666543 7999999999999998888776653 353 689999999976654 333443
No 310
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.66 E-value=2.2e-07 Score=96.80 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+++.++.+|||||||+|.++..++++ +.+|+++|+++.+++.++++... .++++++++|+.+++..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh
Confidence 355678888888889999999999999999999998 56899999999999999987643 34899999999988732
Q ss_pred CCcc---EEEEchhh
Q 002928 695 NKYD---RIISCEMI 706 (864)
Q Consensus 695 ~~fD---~v~s~~~~ 706 (864)
.|| .|+++-.+
T Consensus 91 -~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -DFPKQLKVVSNLPY 104 (253)
T ss_pred -HcCCcceEEEcCCh
Confidence 466 88877553
No 311
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=3.6e-07 Score=107.61 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 218 VDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 218 ~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.|.+.+++.|++|++++.|+++..++++| .|.. .+|+ .+.|+.||+||....
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777777899999999999998777765 2333 2453 578999999998764
No 312
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.66 E-value=8.2e-07 Score=104.00 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE--CCCc-EEecC-EEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR--GDDF-QRVYD-GCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~--~~G~-~~~ad-~VV~A~~~~~ 271 (864)
..+++.|.+.+++.|++|+++++|+++..+++++ .|.+ .+++ .+.++ .||+|+....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 5788899999999999999999999998887765 2333 3343 46786 7999987653
No 313
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.65 E-value=2.4e-07 Score=91.38 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CC-CCccEEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---KS-NKYDRIIS 702 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~-~~fD~v~s 702 (864)
-++.+|||++||+|.+++.++.+...+|+++|.++..++.++++++..++.++++++.+|+.+. . .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999999833489999999999999999999998877899999998543 2 12 24788887
Q ss_pred chhhhhhChhhHHHHHHHH--HhccccCcEEEEEEe
Q 002928 703 CEMIEAVGHDYMEEFFGCC--ESLLAEHGLLLLQFI 736 (864)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~ 736 (864)
.-.+.. ......++.+ ..+|+++|.+++...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 665542 2234445544 347899998888543
No 314
>PRK06185 hypothetical protein; Provisional
Probab=98.65 E-value=4.7e-07 Score=102.11 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE---EEEECCCc-EEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR---IEIRGDDF-QRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~---~V~~~~G~-~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+. |++++.+++|++++.+++++ .+.+.+|+ +++||.||.|..... +.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4556666666554 79999999999998887765 34445664 799999999976554 444444
No 315
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.65 E-value=2.2e-07 Score=100.10 Aligned_cols=50 Identities=24% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 220 KVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 220 ~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.|+++++ +.|.+|+..++++.|++.+|+++++|+||+|+...
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 344445556899999 89999998888888988888889999999999764
No 316
>PRK07121 hypothetical protein; Validated
Probab=98.64 E-value=7e-07 Score=102.91 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE-EEEEC-CCc--EEec-CEEEEccChHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR-IEIRG-DDF--QRVY-DGCIMAVHAPD 271 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~-~V~~~-~G~--~~~a-d~VV~A~~~~~ 271 (864)
+...+.+.|.+.+++.|++|+++++|++|..++ +++ .|... +++ .+.| +.||+|+....
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 356789999999999999999999999998764 444 33332 332 4788 99999998664
No 317
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64 E-value=7.7e-07 Score=103.21 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=45.8
Q ss_pred ecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEE-ECCCc--EEec-CEEEEccChHH
Q 002928 210 VRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEI-RGDDF--QRVY-DGCIMAVHAPD 271 (864)
Q Consensus 210 ~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~-~~~G~--~~~a-d~VV~A~~~~~ 271 (864)
..+| ..++..|.+.+++.|++|+++++|+++..++++| .|. ..+|+ .+.+ +.||+|+..+.
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 3445 8999999999999999999999999998766664 232 23443 3556 47999998764
No 318
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.64 E-value=4.5e-07 Score=103.43 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++++.+ .|+.+..+++++. |.+ +|+.+.++.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 478899999999899999876 7888877677764 444 566899999999998764
No 319
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=1.5e-07 Score=104.26 Aligned_cols=37 Identities=46% Similarity=0.772 Sum_probs=36.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
++|||||||+|||++|.+|.+.|++|+++||.+.+||
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 5899999999999999999999999999999999999
No 320
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.63 E-value=7e-07 Score=104.43 Aligned_cols=61 Identities=33% Similarity=0.545 Sum_probs=46.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.||+|||||++||++|+.|++.|++|+|+|+++.+....+ +..+ .+...++++++|+....
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~r------------a~~l----~~~~~~~l~~lGl~~~l 84 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSR------------AICF----AKRSLEIFDRLGCGERM 84 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCe------------EEEE----cHHHHHHHHHcCCcHHH
Confidence 3899999999999999999999999999999875433110 1111 45667888999986543
No 321
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.2e-06 Score=79.67 Aligned_cols=107 Identities=18% Similarity=0.283 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
...-+||||||+|..+..+++. ++..+.++|+++..++..++.++.++. +++.++.|..+--..++.|+++-+-.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence 3678999999999999999998 678899999999999999998888775 688899997654433889998876422
Q ss_pred ----------hh-----h----ChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 707 ----------EA-----V----GHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 707 ----------~~-----~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+. . |.+-.++++.++..+|.|.|.+++..+.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 11 1 3334678899999999999999996554
No 322
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=4.4e-07 Score=106.14 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-E---EECCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-E---IRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V---~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
...+.+.|.+.+.+.|++|++++.|+++..+++++. | .+.+|+ .+.|+.||+|+....
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 357888999988888999999999999987777642 2 234554 588999999998763
No 323
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.62 E-value=3e-07 Score=91.45 Aligned_cols=50 Identities=26% Similarity=0.633 Sum_probs=42.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC------CeEEEEecCCCCCCcceeEeeCCeeeccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG------VEVVLYEKEDSLGGHAKTVTIDGVDLDLC 52 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G------~~V~vlEa~~~~GG~~~s~~~~G~~~d~G 52 (864)
|+|+|||||+.|.+|||+|++++ +.|+|+|+....|| +|+..+|+.-+..
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g--aSGkasgfLa~wc 66 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG--ASGKASGFLAKWC 66 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc--cccccchhhHhhh
Confidence 57999999999999999999997 89999999888666 7777777765543
No 324
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=7.8e-07 Score=104.73 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=33.5
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||||+|||+||+.++++|.+|+|+||....||
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 899999999999999999999999999999886554
No 325
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.61 E-value=7.1e-07 Score=103.55 Aligned_cols=57 Identities=9% Similarity=-0.058 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE---EEE-----ECCC-cEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR---IEI-----RGDD-FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~---~V~-----~~~G-~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+.++.|+++..++ +++ .+. ..++ ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 5788899999988899999999999998765 343 332 1233 3588999999987753
No 326
>PRK06116 glutathione reductase; Validated
Probab=98.61 E-value=1.7e-07 Score=106.96 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 467788888899999999999999999876555 7788888888999999999854
No 327
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.61 E-value=1.4e-07 Score=108.12 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC--cEEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD--FQRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G--~~~~ad~VV~A~~~~ 270 (864)
..+.+.+.+.+++.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 46777888889899999999999999988878888877777 479999999998643
No 328
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.61 E-value=6.2e-07 Score=93.24 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=116.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCCCCCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYR-QLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~~~~fD~v~s~~~~~ 707 (864)
.-...+|+|.|.|..+..+..+ --+|.+++.+...+..+...+. . .|+.+-+|.. +.| +-|+|++-+++|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P---~~daI~mkWiLh 247 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP---KGDAIWMKWILH 247 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC---CcCeEEEEeecc
Confidence 3479999999999999999997 3469999999988888777654 3 3888889954 444 346999999999
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEEEecCCC-ccccc----ccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD-QCYDE----HRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVE 782 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~----~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~ 782 (864)
|+++++..++|++|+..|+|||++++.+...+. ..... .....+.+...+-++|.-.+..+....+.+ +||.+.
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~-~gF~~~ 326 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPE-EGFPVC 326 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchh-hcCcee
Confidence 999999999999999999999999998886664 22211 112233334444466777788888666554 899988
Q ss_pred EEEeccccHH
Q 002928 783 DLENIGIHYY 792 (864)
Q Consensus 783 ~~~~~~~~y~ 792 (864)
.+.....+|.
T Consensus 327 ~~~~~~~~~~ 336 (342)
T KOG3178|consen 327 MVALTAYSYS 336 (342)
T ss_pred EEEeccCccc
Confidence 8776665553
No 329
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.61 E-value=5.7e-07 Score=100.22 Aligned_cols=56 Identities=16% Similarity=-0.080 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---Cc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---DF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G~--~~~ad~VV~A~~~~~ 271 (864)
+++-..++.+.+.|++|...++|+++.++++-|.|...| |+ ++.|+.||.|+.+..
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 788888888999999999999999999988855666543 32 588999999998775
No 330
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.59 E-value=6.7e-07 Score=100.82 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhh-cCceEEeCcceEEEEEeCCeE-EEE-ECCCc--EEecCEEEEccChH
Q 002928 215 RSYVDKVIELLES-LGCQIKTGCEVRSVLQYGEGR-IEI-RGDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~-~V~-~~~G~--~~~ad~VV~A~~~~ 270 (864)
..+.+.|.+.+++ .|++|+++++|++|..+++++ .|. +.+++ .+.|+.||+|+...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4688888888865 489999999999998776664 222 33443 58899999999874
No 331
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.59 E-value=5.6e-08 Score=111.18 Aligned_cols=37 Identities=51% Similarity=0.789 Sum_probs=32.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
|+|||||||+|||+||..|.+.|++|+++|+++.+||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 6899999999999999999999999999999999999
No 332
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.59 E-value=7.8e-07 Score=105.00 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE---EEEE-CCCc--EEecCEEEEccChHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR---IEIR-GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~---~V~~-~~G~--~~~ad~VV~A~~~~~ 271 (864)
....+...|.+.+.+.|++|+.+++|++|..+++++ .+.. .+|+ .+.|+.||+||..+.
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677888888888999999999999998877764 3332 4564 367999999998764
No 333
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=7.8e-07 Score=103.70 Aligned_cols=57 Identities=5% Similarity=-0.052 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEEC---CCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRG---DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~---~G~--~~~ad~VV~A~~~~~ 271 (864)
..++..|.+.+.+.|++|++++.++++..++++|. |... +|+ .+.|+.||+||....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 46888898888888999999999999998777753 3322 333 578999999998764
No 334
>PRK04148 hypothetical protein; Provisional
Probab=98.58 E-value=7e-07 Score=80.83 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchH-HHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
+.+.+.+....+.+|||||||.|. ++..|++. |.+|+++|+++..++.++++ .++++++|+.+-. .-+
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 345555555567899999999996 88889886 99999999999988888765 4789999988766 346
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.+|+|.|+-. ..++...+.++.+.+ |.-++|...+
T Consensus 77 ~a~liysirp-----p~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 77 NAKLIYSIRP-----PRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred cCCEEEEeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 7999999843 233455555555533 4556665544
No 335
>PLN02697 lycopene epsilon cyclase
Probab=98.57 E-value=6.3e-07 Score=102.15 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|+++ .+++|++|+.+++++. +++.+|.+++|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56677888888889998 7889999988777765 4567787899999999987765
No 336
>PLN02823 spermine synthase
Probab=98.57 E-value=5.2e-07 Score=96.44 Aligned_cols=104 Identities=20% Similarity=0.306 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcccCCCC--CCCCccEEEE
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG---LQDHIRLYLCDYRQLP--KSNKYDRIIS 702 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~~~--~~~~fD~v~s 702 (864)
...+||.||+|.|..+..+.+. ...+|+.||+++++++.|++.+...+ -.++++++.+|..+.- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999999886 34689999999999999999875321 1458999999987753 4578999998
Q ss_pred chh-------hhhhChhhHHHHHH-HHHhccccCcEEEEEE
Q 002928 703 CEM-------IEAVGHDYMEEFFG-CCESLLAEHGLLLLQF 735 (864)
Q Consensus 703 ~~~-------~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 735 (864)
... -.++ .-.++++ .+++.|+|||.++++.
T Consensus 183 D~~dp~~~~~~~~L---yt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQL---YTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhh---ccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 1111 1357887 8999999999998864
No 337
>PRK06996 hypothetical protein; Provisional
Probab=98.57 E-value=7.2e-07 Score=100.02 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC---cEEecCEEEEccCh--HHHHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD---FQRVYDGCIMAVHA--PDALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G---~~~~ad~VV~A~~~--~~~~~ll~ 277 (864)
.+-+.|.+.+++.|++++.+++|++++.++++|+|+..+| ++++||.||-|-.. ....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 5777788888888999999999999998888998887754 58999999999552 34344443
No 338
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=1.6e-06 Score=99.21 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC---cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD---FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G---~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+.+++++.+.+.+| +++.+|.||+|++.
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 46777888888889999999999999988777787777665 57999999999864
No 339
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.54 E-value=4.5e-07 Score=92.20 Aligned_cols=158 Identities=22% Similarity=0.187 Sum_probs=98.9
Q ss_pred HHHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC----------------
Q 002928 617 KVSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ---------------- 678 (864)
Q Consensus 617 ~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~---------------- 678 (864)
.++.+.+.+. ...|.++||||||.-..-..-|...--+|+..|.++.-.+..++.++..+--
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 3344444443 2457899999999855543333333457999999999988777665443210
Q ss_pred -----------CCe-EEEEcccCCCC---C----CCCccEEEEchhhhhhC--hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 679 -----------DHI-RLYLCDYRQLP---K----SNKYDRIISCEMIEAVG--HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 679 -----------~~v-~~~~~d~~~~~---~----~~~fD~v~s~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
..| .++.+|+.+.+ + +++||+|+|..+++.+. .+....+++++.++|||||.|++....
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 124 47889987765 2 13599999999999985 345778899999999999999997764
Q ss_pred CCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEE
Q 002928 738 VPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~ 785 (864)
... .|. +...-||.. ..+.+.+.+++++ +||.+++.+
T Consensus 202 ~~t-~Y~--------vG~~~F~~l-~l~ee~v~~al~~-aG~~i~~~~ 238 (256)
T PF01234_consen 202 GST-YYM--------VGGHKFPCL-PLNEEFVREALEE-AGFDIEDLE 238 (256)
T ss_dssp S-S-EEE--------ETTEEEE----B-HHHHHHHHHH-TTEEEEEEE
T ss_pred Cce-eEE--------ECCEecccc-cCCHHHHHHHHHH-cCCEEEecc
Confidence 322 111 111223322 2356778888887 899999887
No 340
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.53 E-value=7.4e-07 Score=99.48 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=92.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEE
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRII 701 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~ 701 (864)
++++|++|||++||.|+=+.++|+.. ...|++.|+++.-++..++++++.|+. ++.+...|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 67899999999999999999999973 368999999999999999999999986 7999999988765 346799999
Q ss_pred E----c--hhhhhhC-------hh-------hHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 702 S----C--EMIEAVG-------HD-------YMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 702 s----~--~~~~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
. . +++..-+ .+ ...++|.++.++|||||+++-++++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 4 3 2332211 11 2367899999999999999998877544
No 341
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.53 E-value=1.7e-06 Score=101.33 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE---EEEECCCc-EEec-CEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR---IEIRGDDF-QRVY-DGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~---~V~~~~G~-~~~a-d~VV~A~~~~~ 271 (864)
..+++.|.+.+++.|++|+++++|++|..+++++ .+.+.++. ++.| +.||+|+....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5789999999999999999999999998777764 23333443 4788 99999998764
No 342
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.52 E-value=8.4e-07 Score=100.67 Aligned_cols=62 Identities=11% Similarity=-0.075 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcC---ceEEeCcceEEEEEe-------CCeEEEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLG---CQIKTGCEVRSVLQY-------GEGRIEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G---~~I~~~~~V~~I~~~-------~~~~~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+.+ ++++.+++|++|+.. +++++|++.+|++++||.||-|-.... +.+.++
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 45566666666654 899999999999753 456889999999999999999955443 334443
No 343
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.52 E-value=1.2e-06 Score=85.12 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=82.4
Q ss_pred eEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhC
Q 002928 632 EVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVG 710 (864)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~ 710 (864)
+++|||+|.|..++.+|-. |..+++.+|.+..-+...+.-+.+.+++ |++++++.+++.....+||.|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv----- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAV----- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehh-----
Confidence 8999999999999988876 7899999999999999999999999996 89999999999335689999999854
Q ss_pred hhhHHHHHHHHHhccccCcEEEE
Q 002928 711 HDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 711 ~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
..+..+++-+..+|+|||++++
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEE
Confidence 3467899999999999999988
No 344
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4.5e-07 Score=91.78 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+++.+++.|||||+|.|.++..|+++ +.+|+++|+++.+++..+++.. ..++++++.+|+...+..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 355789999999999999999999999999999998 8899999999999999998875 235899999999888733
Q ss_pred C--CccEEEEchhh
Q 002928 695 N--KYDRIISCEMI 706 (864)
Q Consensus 695 ~--~fD~v~s~~~~ 706 (864)
. .++.|+++-..
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 3 78999998654
No 345
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.52 E-value=1.1e-06 Score=102.09 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|++.+.. ..++.+++|++|+..+++++|++.+|+++++|.||.|-....
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 566667666632 247899999999998999999999998899999999965443
No 346
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.52 E-value=1.2e-06 Score=97.10 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+-+.+.+.+. +++.+++++.|++|+..++.+.|++++|++++|+.||-|.+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 45566777776 4667899999999999888889999999999999999998744
No 347
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.51 E-value=3.5e-06 Score=98.92 Aligned_cols=57 Identities=12% Similarity=-0.012 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEE-E---EECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRI-E---IRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~-V---~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.++++| ++|+.++.|++|..+++++. | .+.+|+ .+.|+.||+|+....
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357777888887776 99999999999987677642 2 233553 588999999998764
No 348
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.51 E-value=3.3e-06 Score=98.24 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE-CCCc--EEecC-EEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR-GDDF--QRVYD-GCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~-~~G~--~~~ad-~VV~A~~~~~ 271 (864)
...++..|.+.+++.|++|+++++|++|..++++| .|.. .+|+ .+.|+ .||+|+....
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 35788899999999999999999999998877765 2322 2443 46785 6999987764
No 349
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.50 E-value=6.7e-07 Score=101.84 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+...|.+.+.+. |++| ..+.|..+..+++++ .|.+.+|..+.|+.||+|+....
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4566666666655 6787 467799998877776 58888998999999999998653
No 350
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2.2e-06 Score=100.53 Aligned_cols=57 Identities=7% Similarity=-0.211 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhh-cCceEEeCcceEEEEEeCCeEE-E---EECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLES-LGCQIKTGCEVRSVLQYGEGRI-E---IRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~~-V---~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+ .|++|+.++.|+++..+++++. | ...+|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4688888888766 5899999999999987777652 2 234564 478999999998764
No 351
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.50 E-value=4.7e-07 Score=88.46 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=86.1
Q ss_pred HHHHHcCC--CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC----
Q 002928 620 LLIQKARV--SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP---- 692 (864)
Q Consensus 620 ~~~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~---- 692 (864)
.+.+.+.. -+|.+|||+-||+|.+++.++.+...+|+.||.++..++..+++++..++.++++++..|+.. +.
T Consensus 31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~ 110 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK 110 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc
Confidence 44444432 378999999999999999999983458999999999999999999999988789999999543 22
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHH--hccccCcEEEEEEec
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCE--SLLAEHGLLLLQFIS 737 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 737 (864)
...+||+|+....+..- ......++.+. .+|+++|.+++....
T Consensus 111 ~~~~fDiIflDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 111 KGEKFDIIFLDPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp CTS-EEEEEE--STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred cCCCceEEEECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 46899999998776543 11467777776 899999999996644
No 352
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.50 E-value=7.3e-07 Score=103.07 Aligned_cols=54 Identities=7% Similarity=-0.045 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+++.|++++++++|.+|..+++.+.|++.+|+++.||.||+|+.+.
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 444455666666999999999999988777788888888889999999999864
No 353
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.49 E-value=5.3e-07 Score=102.76 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISC 703 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~ 703 (864)
..+..+||||||.|.++..+|+. |+..++|+|++..-+..+.+++...++. |+.++..|+..+. +++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34678999999999999999998 8899999999999999999998888885 8999998876544 56889999998
Q ss_pred hhhhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+.=-|...+ --+.+++.+.++|||||.+.+.+
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 754332111 13678999999999999999843
No 354
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.49 E-value=2.5e-06 Score=97.97 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhh-cCceEEeCcceEEEEEeCCeEE-EEECC-C--cEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLES-LGCQIKTGCEVRSVLQYGEGRI-EIRGD-D--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~~-V~~~~-G--~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++ .|++|++++.|++|..+++++. |.+.+ + ..+.++.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4788889998887 5899999999999987766653 43332 3 3688999999998764
No 355
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.49 E-value=8e-07 Score=89.50 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcccCCCC
Q 002928 615 MRKVSLLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHI-RLYLCDYRQLP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v-~~~~~d~~~~~ 692 (864)
..++..+++.+++ .++.+|||+|||+|.++..+++....+|+|+|++++|+....+ +. .++ .+...|++.+.
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecCCcccCC
Confidence 3566778888775 4788999999999999999999733589999999998876221 11 133 24444555433
Q ss_pred ------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 693 ------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 693 ------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.-..||++++.. ...+..+.++|+| |.+++
T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 113567666542 2357789999999 77665
No 356
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.7e-06 Score=100.30 Aligned_cols=57 Identities=12% Similarity=-0.096 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhhc-CceEEeCcceEEEEEeC--CeE-EEE-ECCCc--EEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESL-GCQIKTGCEVRSVLQYG--EGR-IEI-RGDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~--~~~-~V~-~~~G~--~~~ad~VV~A~~~~ 270 (864)
...++..|.+.+.+. |++|+++++|+++..++ +++ .|. ..+|+ .+.|+.||+||...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 357888898888654 89999999999998763 443 232 23554 37899999999875
No 357
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.49 E-value=8.4e-07 Score=102.68 Aligned_cols=54 Identities=9% Similarity=-0.104 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+++.|++++++++|.+|...++.+.|.+.+|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 444556666666999999999999998877888988888889999999999874
No 358
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=1.4e-06 Score=99.75 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC--CC--cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG--DD--FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~--~G--~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++.+++. +| +++++|.||+|+..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 467788889999999999999999999877666655543 56 36999999999763
No 359
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.1e-06 Score=99.89 Aligned_cols=57 Identities=11% Similarity=-0.008 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-E-EEE--E-CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-R-IEI--R-GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~-~V~--~-~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|++++.|+++..++++ + .|. . .+|+ .+.|+.||+||....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 468888888888889999999999999876654 4 222 2 4554 588999999998763
No 360
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.48 E-value=2.4e-06 Score=98.66 Aligned_cols=36 Identities=39% Similarity=0.704 Sum_probs=34.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
||+||||| +||+||+++++.|.+|+||||.+.+||.
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 89999999 9999999999999999999999887874
No 361
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.48 E-value=1.8e-06 Score=101.15 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=32.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 3 AAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 3 V~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
|+|||||+|||+||+.++++|.+|+|+||.+.+|+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999885554
No 362
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.48 E-value=2.6e-06 Score=96.84 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|+++++++.|++|+..++++.|++.+|+++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 4667778888888899999999999998777777788878878999999999864
No 363
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.47 E-value=6.2e-07 Score=88.69 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
..++.|+++.++++++.|||||.|+|.++..+.+. +.+|+++|+++.|+....++.+....+.+.+++++|+...+ ..
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LP 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-Cc
Confidence 34678999999999999999999999999999997 99999999999999999999986666689999999987765 23
Q ss_pred CccEEEEchh
Q 002928 696 KYDRIISCEM 705 (864)
Q Consensus 696 ~fD~v~s~~~ 705 (864)
.||.+|++-.
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 6999999643
No 364
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=5e-06 Score=96.93 Aligned_cols=38 Identities=47% Similarity=0.807 Sum_probs=35.6
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCC--CCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKED--SLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~--~~GG~~ 39 (864)
||+|||+|.|||+||+.++++|.+|+||||.+ .+||.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 89999999999999999999999999999999 788843
No 365
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.47 E-value=8.5e-07 Score=92.07 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCC-C---CCCCccEEEE
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQL-P---KSNKYDRIIS 702 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~-~---~~~~fD~v~s 702 (864)
.|.+|||+-|=+|+++.+++.. |+ +|++||.|...++.+++++..++++ ++++++..|+.+. . ..++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999998886 65 7999999999999999999999985 6899999997653 2 3468999998
Q ss_pred chhhh-----hhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 703 CEMIE-----AVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 703 ~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
...-. .+ .+++..++..+.++|+|||.+++.+.
T Consensus 202 DPPsF~k~~~~~-~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDL-ERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEH-HHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHH-HHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 53210 11 14678899999999999999987554
No 366
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=1.4e-06 Score=101.81 Aligned_cols=36 Identities=31% Similarity=0.584 Sum_probs=34.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||+|++||+||+.++++|.+|+||||.+..||
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 899999999999999999999999999999998887
No 367
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=2.2e-06 Score=100.23 Aligned_cols=58 Identities=3% Similarity=-0.134 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
-..+...|.+.+.+.|++|++++.|+++..+ ++++ .|. ..+|+ .+.|+.||+||....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3578889999888889999999999999875 5554 232 23554 478999999998764
No 368
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.46 E-value=4.4e-06 Score=98.17 Aligned_cols=57 Identities=7% Similarity=-0.063 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEE-eCCeE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQ-YGEGR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~-~~~~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|+++++|+++.. +++++ .|. ..+|+ .+.|+.||+||....
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 57888999999889999999999999877 45654 232 23554 578999999997753
No 369
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.45 E-value=3.2e-06 Score=97.39 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE-EEEEC-CCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR-IEIRG-DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~-~V~~~-~G~--~~~ad~VV~A~~~~~ 271 (864)
...+.+.|.+.+.+. |++|+.+++|++|..++++| .|.+. +++ .+.|+.||+|+....
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 357888999888765 89999999999987766664 33332 232 588999999998753
No 370
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.45 E-value=1.8e-06 Score=98.95 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC---CCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG---DDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~---~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+.+++.+.+++. +++++++|.||+|+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 456777888888889999999999999877666655543 2357999999999864
No 371
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.44 E-value=1.1e-06 Score=96.22 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEchhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK-SNKYDRIISCEMI 706 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~v~s~~~~ 706 (864)
++.+|||++||+|.+++.++.+.+ .+|+++|++++.++.++++++.+++. ++++.++|+..+.. .++||+|+....
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence 357999999999999999988733 48999999999999999999998885 67899999876542 467999998642
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
| ....++....+.++|||.++++
T Consensus 135 ---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 2 2356778877788999999996
No 372
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.44 E-value=9.8e-07 Score=99.29 Aligned_cols=37 Identities=51% Similarity=0.906 Sum_probs=35.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCe-EEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVE-VVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~-V~vlEa~~~~GG 37 (864)
.||+|||||+|||++|++|.++|.. ++||||++.+||
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 4899999999999999999999998 999999999998
No 373
>PRK08275 putative oxidoreductase; Provisional
Probab=98.43 E-value=2.3e-06 Score=99.77 Aligned_cols=57 Identities=9% Similarity=-0.050 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|++++.|++|..+ ++++ .|. ..+|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467888989888889999999999999876 5554 222 33564 478999999998763
No 374
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=1.4e-06 Score=99.56 Aligned_cols=37 Identities=35% Similarity=0.611 Sum_probs=35.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
.||+|||||.+|++||..|++.|++|+|+|+.+.+||
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG 41 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 4899999999999999999999999999999877888
No 375
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.43 E-value=1e-06 Score=95.07 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+.+. +++|. ..+|+.|..+++++ .|.+.+|+++.+|.||+|+..+
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 3455555566553 56775 68899999988885 7899999999999999999873
No 376
>PRK06370 mercuric reductase; Validated
Probab=98.43 E-value=1.5e-06 Score=99.53 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEE--C-CCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIR--G-DDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~--~-~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+..++++.|.+ . +++++.+|.||+|++.
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 35677788888888999999999999987766654443 2 3447999999999864
No 377
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-06 Score=88.89 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch----HHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHH-----
Q 002928 608 EDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWG----TLAIEIVKQT------GCKYTGITLSEEQLKYAEMKV----- 672 (864)
Q Consensus 608 ~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G----~~~~~la~~~------~~~v~gid~s~~~~~~a~~~~----- 672 (864)
+.++.-....+..++..... ..-+|.-+||++| .+|+.+.+.. ..+|+|+|+|...++.|++-.
T Consensus 76 ~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268)
T COG1352 76 EHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE 154 (268)
T ss_pred HHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence 34555444444444443322 4679999999999 4555555542 479999999999999997521
Q ss_pred HHcCCC-----------------------CCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccC
Q 002928 673 KEAGLQ-----------------------DHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 673 ~~~~l~-----------------------~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
...+++ ..|.|...|..+-+ ..+.||+|+|-+++-++..+...++++.++..|+||
T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 112221 36788888876665 667899999999999998888999999999999999
Q ss_pred cEEEE
Q 002928 729 GLLLL 733 (864)
Q Consensus 729 G~l~i 733 (864)
|.|++
T Consensus 235 G~Lfl 239 (268)
T COG1352 235 GLLFL 239 (268)
T ss_pred CEEEE
Confidence 99999
No 378
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.43 E-value=3.6e-06 Score=98.37 Aligned_cols=57 Identities=11% Similarity=-0.098 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEE----EEECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRI----EIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~----V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+. +++|+.++.|+++..+++++. +...+|+ .+.|+.||+|+....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46778888877664 799999999999988777653 2334663 688999999998754
No 379
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=1.9e-06 Score=83.89 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P- 692 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 692 (864)
.++.+++.+ ...++||||.=+|..++..|.. .+++|+++|++++..+.+.+..+.+|..++|+++++++.+. +
T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 344444444 4569999999999888888877 67899999999999999999999999999999999997552 2
Q ss_pred -----CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 693 -----KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 693 -----~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
..++||.++.- |.. .+...++.++-++||+||.+++.....+.
T Consensus 141 l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 46899999964 333 34568999999999999999996544333
No 380
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.42 E-value=3.8e-06 Score=95.55 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+.+++++.+.+.++ ++.+|.||+|+..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 46788888999999999999999999988777777877666 6899999999754
No 381
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=7.7e-06 Score=95.76 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEEC-CCc--EEec-CEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRG-DDF--QRVY-DGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~-~G~--~~~a-d~VV~A~~~~~ 271 (864)
..++..|.+.+++.|++|+++++|+++..+++++ .|.+. +|+ .+.| +.||+|+....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 4788999999999999999999999998766765 34333 343 4676 68999998764
No 382
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.41 E-value=6.8e-06 Score=95.74 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEE-CCCc--EEecC-EEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIR-GDDF--QRVYD-GCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~-~~G~--~~~ad-~VV~A~~~~~ 271 (864)
..+...|.+.+++.|++|+++++|++|..+++++. |.. .+|+ .+.|+ .||+|+....
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 46788888889889999999999999988777652 333 2443 47786 5999987653
No 383
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1e-06 Score=92.89 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEchh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS-NKYDRIISCEM 705 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~v~s~~~ 705 (864)
++|.+|||.-||.|.+++.+|+. +. +|+++|++|..+++.+++++.+++.+.|..+++|.+++.+. +.||.|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 46999999999999999999997 54 49999999999999999999999998899999999998844 88999998754
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCc
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQ 741 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 741 (864)
- .-..++....+++++||.+..+.+...+.
T Consensus 266 ~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 2 23567778888889999999988765543
No 384
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=7.2e-06 Score=93.21 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+.+++++.+.+ +|+++.+|.||+|+..
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 35666777778888999999999999987666776655 5668999999999864
No 385
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.41 E-value=4.1e-06 Score=97.66 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEE----EEECCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRI----EIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~----V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
-..+.+.|.+.+.+. +++++.++.|+++..+++++. +...+|+ .+.|+.||+|+....
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 357888888887664 799999999999988777653 2234563 578999999998764
No 386
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.40 E-value=2.2e-06 Score=97.42 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCC-cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDD-FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G-~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|+++++++.|++|+.++++ +.|.+.+| +++.+|.||+|++.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 357778888888899999999999999876444 67777777 56999999999864
No 387
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.40 E-value=7.1e-07 Score=93.14 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
+++.+++.+.+.++..+||.+||.|+.+..+++.. .++|+|+|.++++++.|++++.+ .++++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 45688888988999999999999999999999983 48999999999999999998765 358999999998875
Q ss_pred -CCC--CccEEEEchh
Q 002928 693 -KSN--KYDRIISCEM 705 (864)
Q Consensus 693 -~~~--~fD~v~s~~~ 705 (864)
+++ ++|.|+....
T Consensus 84 l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 LAEGLGKVDGILLDLG 99 (296)
T ss_pred HHcCCCccCEEEECCC
Confidence 222 7999998653
No 388
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=2e-06 Score=89.22 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG--L-QDHIRLYLCDYRQ 690 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~ 690 (864)
.+++..+.-.....+ .+||-||-|.|+.++.+.+. .-.+++.|||+++.++.+++.+.... . .+|++++..|..+
T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence 344444444444455 69999999999999999998 35799999999999999999876533 2 3699999999776
Q ss_pred CC--CCCCccEEEEchhhhhhCh-h--hHHHHHHHHHhccccCcEEEEE
Q 002928 691 LP--KSNKYDRIISCEMIEAVGH-D--YMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 691 ~~--~~~~fD~v~s~~~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+- ...+||+|++...=. .++ + .-..+++.|+++|+|+|.++.+
T Consensus 142 ~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 142 FLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 54 334899999864322 221 0 1278999999999999999997
No 389
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=4.9e-06 Score=97.61 Aligned_cols=57 Identities=4% Similarity=-0.126 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|+++++|+++..++ ++| .|. ..+|+ .+.|+.||+||....
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899998988899999999999998765 554 232 23554 578999999998764
No 390
>PRK12839 hypothetical protein; Provisional
Probab=98.39 E-value=1.4e-05 Score=93.14 Aligned_cols=38 Identities=34% Similarity=0.574 Sum_probs=36.0
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 89999999999999999999999999999999888854
No 391
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.39 E-value=4.8e-06 Score=97.88 Aligned_cols=57 Identities=9% Similarity=-0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
..++..|.+.+.+.|++|+.++.++++..+ ++++ .|.. .+|+ .+.|+.||+||....
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 478889999888889999999999998775 4554 2322 3554 578999999998764
No 392
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.38 E-value=1.5e-06 Score=98.22 Aligned_cols=54 Identities=19% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+-+-|.+.+.++|++++.++ |..+..++++ ..|++.+|++++||.||=|+...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 566668888888899999885 8888777665 37888999999999999998765
No 393
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4e-06 Score=92.67 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
..+++.+++.++..++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|+.+|++++.
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhh
Confidence 567788889999889999999999999999999986 789999999999999999999999997 5999999998876
Q ss_pred C--CCCccEEEEchhhhhhChhhHH-HHHHHHHhccccCcEEEEEE
Q 002928 693 K--SNKYDRIISCEMIEAVGHDYME-EFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ~--~~~fD~v~s~~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~ 735 (864)
. ...+|.|+..- |..-.+ .+++.+ ..++|...+++++
T Consensus 357 ~~~~~~~d~VvvDP-----PR~G~~~~~lk~l-~~~~p~~IvYVSC 396 (432)
T COG2265 357 WWEGYKPDVVVVDP-----PRAGADREVLKQL-AKLKPKRIVYVSC 396 (432)
T ss_pred ccccCCCCEEEECC-----CCCCCCHHHHHHH-HhcCCCcEEEEeC
Confidence 1 35789999753 222233 344433 3456777888743
No 394
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.37 E-value=1.8e-06 Score=95.80 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEE-EECCCc--EEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIE-IRGDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V-~~~~G~--~~~ad~VV~A~~~~ 270 (864)
++.+.|.+.+++.|++|+++++|++++.+++++.+ .+.+|+ .++||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 78999999999999999999999999988877654 344453 58999999998765
No 395
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.37 E-value=2.7e-06 Score=93.04 Aligned_cols=111 Identities=13% Similarity=0.251 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
...++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|+|+|+.+++.|+++++.+++. +++++.+|+.+.-
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence 34555555555433 357999999999999999986 569999999999999999999998885 8999999986631
Q ss_pred --C-------------CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 --K-------------SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 --~-------------~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. ..+||+|+..-.-.-+ ....++.+. +|++.+++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQ---AYERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHH---ccCCEEEEEe
Confidence 0 1258999987542111 234444444 3777777743
No 396
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.8e-06 Score=83.20 Aligned_cols=108 Identities=21% Similarity=0.238 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--- 692 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (864)
+..++..|.++||.+|||-|.|+|.++..+++. +-.++...|+.+.-.+.|.+.+++.++++++++.+.|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 458889999999999999999999999999998 667999999999999999999999999999999999987765
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCc-EEE
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHG-LLL 732 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~ 732 (864)
.+..+|+|+.... .+-.++-.+..+||.+| +++
T Consensus 174 ks~~aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP-------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC-------ChhhhhhhhHHHhhhcCceEE
Confidence 3678999997532 23444555666888876 444
No 397
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1e-05 Score=94.86 Aligned_cols=57 Identities=4% Similarity=-0.123 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+.|++|+.++.|+++..+ ++++ .|.. .+|+ .+.|+.||+|+....
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 468888988888889999999999999875 4544 3322 3454 578999999998764
No 398
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.36 E-value=2e-06 Score=90.96 Aligned_cols=36 Identities=36% Similarity=0.775 Sum_probs=32.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
+|+|||||++||++|+.|+++|++|+|||++.-+=|
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 799999999999999999999999999998665444
No 399
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6.9e-07 Score=79.34 Aligned_cols=86 Identities=21% Similarity=0.352 Sum_probs=70.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (864)
.+-+..+--.|.+++|+|||.|.+....+--....|.|+|++++.++.+++++.+..+ ++++.++|+.++. ..+.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEe
Confidence 3344444457899999999999999665554456799999999999999999988776 6799999999987 568899
Q ss_pred EEEEchhhh
Q 002928 699 RIISCEMIE 707 (864)
Q Consensus 699 ~v~s~~~~~ 707 (864)
.++.+..|.
T Consensus 117 taviNppFG 125 (185)
T KOG3420|consen 117 TAVINPPFG 125 (185)
T ss_pred eEEecCCCC
Confidence 999987663
No 400
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.35 E-value=3.1e-06 Score=92.20 Aligned_cols=110 Identities=11% Similarity=0.212 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K- 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~- 693 (864)
.+++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.++. .
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHH
Confidence 44455566555433 47999999999999999987 469999999999999999999999885 7999999987632 1
Q ss_pred ---------C------CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 694 ---------S------NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 694 ---------~------~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. ..||+|+..-. .-| -...+++.+. +|++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G--~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPP--RAG--LDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred hhccccccccccccccCCCCEEEECCC--CCC--CcHHHHHHHH---cCCcEEEEEc
Confidence 0 13899998654 111 1234444443 4788888743
No 401
>PLN02507 glutathione reductase
Probab=98.35 E-value=2.4e-05 Score=89.90 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|++++.|++|+.+++++.|.+.+|+++++|.||+|++.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 4677778888888999999999999998777778888888888999999999764
No 402
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=5.2e-07 Score=90.58 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
+.++...++... .+..+||+|||.|.... ..|.+.+.|.|++...+.-+++. + ......+|+..+| .
T Consensus 33 Wp~v~qfl~~~~--~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~ 100 (293)
T KOG1331|consen 33 WPMVRQFLDSQP--TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFR 100 (293)
T ss_pred cHHHHHHHhccC--CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCC
Confidence 445566666654 48999999999998764 23788999999999998888754 1 2268899999999 7
Q ss_pred CCCccEEEEchhhhhhChh-hHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 694 SNKYDRIISCEMIEAVGHD-YMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+.+||.++++.++||+..+ ....+++++.|+|+|||..++..+...
T Consensus 101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 8899999999999999644 467789999999999999998766543
No 403
>PLN02985 squalene monooxygenase
Probab=98.35 E-value=7.4e-06 Score=94.12 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=43.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
.||+|||||++|+++|+.|+++|++|+|+|+......+. .| .. -.++-.+.++++|+...
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-----~g-------~~----L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-----MG-------EF----MQPGGRFMLSKLGLEDC 103 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-----cc-------cc----cCchHHHHHHHcCCcch
Confidence 489999999999999999999999999999975321100 01 11 13445677888887653
No 404
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.34 E-value=1.8e-06 Score=96.18 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc--EEecCEEEEccC
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF--QRVYDGCIMAVH 268 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~--~~~ad~VV~A~~ 268 (864)
..+++.+.+.+++.|++|+++++|++++..++++.+++++|+ ++++|.|++|+.
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 488889999998878999999999999988777888888775 688999999985
No 405
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.33 E-value=7.8e-06 Score=94.18 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEE--CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIR--GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~--~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+. .|++|+++++|++|..+++++. |.+ .+|+ .+.|+.||+|+....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 467888888776 5999999999999987777642 333 2343 578999999997754
No 406
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.33 E-value=3.8e-06 Score=96.31 Aligned_cols=36 Identities=39% Similarity=0.643 Sum_probs=33.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
.||+|||||++|++||..|++.|++|+|+|+. .+||
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG 40 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGG 40 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCc
Confidence 48999999999999999999999999999985 6787
No 407
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.33 E-value=2.3e-06 Score=99.68 Aligned_cols=36 Identities=31% Similarity=0.641 Sum_probs=33.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
.||+|||||+|||+||..|+++|++|+|+|++ .+||
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG 40 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGG 40 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCc
Confidence 48999999999999999999999999999985 5676
No 408
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.33 E-value=1.1e-05 Score=85.45 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=99.9
Q ss_pred hc-CChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-----cCCE
Q 002928 581 YD-LSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-----TGCK 654 (864)
Q Consensus 581 Yd-~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~ 654 (864)
|| .+.+.|..... .+.||....+ .+.-++....|...+ .++..|+|+|||.|.=+..+.+. ...+
T Consensus 36 YD~~Gs~LFe~It~-----lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~ 106 (319)
T TIGR03439 36 YDDEGLKLFEEITY-----SPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVD 106 (319)
T ss_pred hcchHHHHHHHHHc-----CCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCce
Confidence 54 35566665432 3345543221 111123334555554 46779999999999987766654 2468
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEcccCCC----CC---CCCccEEEEch-hhhhhChhhHHHHHHHHHh-
Q 002928 655 YTGITLSEEQLKYAEMKVKEAGLQDHIRL--YLCDYRQL----PK---SNKYDRIISCE-MIEAVGHDYMEEFFGCCES- 723 (864)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~--~~~d~~~~----~~---~~~fD~v~s~~-~~~~~~~~~~~~~l~~~~~- 723 (864)
+++||+|.++++.+.+++.....+ .+++ +++|+.+. +. .....+|+..+ +|..+.++....+++++++
T Consensus 107 Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~ 185 (319)
T TIGR03439 107 YYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLAT 185 (319)
T ss_pred EEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999998844443 4555 88998663 21 23467777765 8889988888899999999
Q ss_pred ccccCcEEEEE
Q 002928 724 LLAEHGLLLLQ 734 (864)
Q Consensus 724 ~LkpgG~l~i~ 734 (864)
.|+|||.++|.
T Consensus 186 ~l~~~d~lLiG 196 (319)
T TIGR03439 186 ALSPSDSFLIG 196 (319)
T ss_pred hCCCCCEEEEe
Confidence 99999999983
No 409
>PLN02815 L-aspartate oxidase
Probab=98.32 E-value=6.1e-06 Score=96.05 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=33.3
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||+|+|||+||+.+++.| +|+|+||....||
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 8999999999999999999999 9999999988776
No 410
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=9e-06 Score=95.31 Aligned_cols=57 Identities=7% Similarity=-0.074 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC----CeE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG----EGR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~----~~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+.|++|++++.|++|..++ +++ .|. ..+|+ .+.|+.||+||....
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5788899998988899999999999997665 554 232 23554 478999999998764
No 411
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.30 E-value=1.2e-05 Score=101.27 Aligned_cols=37 Identities=46% Similarity=0.797 Sum_probs=35.5
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
||+|||+|.|||+||+.+++.|.+|+||||.+..||.
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 8999999999999999999999999999999998884
No 412
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=5.2e-06 Score=81.99 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC-ccEEEEchhhh
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK-YDRIISCEMIE 707 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~-fD~v~s~~~~~ 707 (864)
+.+++|||+|.|-.++.+|-. ++.+||-+|....-+.+.+....+.+++ |++++++.++++..+.. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc--
Confidence 589999999999999998843 7889999999999999999999999996 89999999999984344 999999754
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.++..+++-+..++|+||.++.
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchh
Confidence 4567888889999999999875
No 413
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.29 E-value=8.9e-06 Score=86.35 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-----------------------------------------E
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-----------------------------------------K 654 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-----------------------------------------~ 654 (864)
.....|+...+.+++..++|-=||+|.+++.+|.. +. .
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44457777788899999999999999999999876 21 3
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEchhh-hhhChh-----hHHHHHHHHHhcccc
Q 002928 655 YTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS-NKYDRIISCEMI-EAVGHD-----YMEEFFGCCESLLAE 727 (864)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~v~s~~~~-~~~~~~-----~~~~~l~~~~~~Lkp 727 (864)
++|+|+++.+++.|+.+++.+|+.+.|+|.++|+.+++.. +.+|+|||+... +-++.+ -+..+.+.+++.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 7799999999999999999999999999999999999844 899999998643 112222 345666677777777
Q ss_pred CcEEEEEE
Q 002928 728 HGLLLLQF 735 (864)
Q Consensus 728 gG~l~i~~ 735 (864)
-+++++.+
T Consensus 337 ws~~v~tt 344 (381)
T COG0116 337 WSRYVFTT 344 (381)
T ss_pred CceEEEEc
Confidence 77888743
No 414
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.29 E-value=3.2e-06 Score=87.01 Aligned_cols=108 Identities=27% Similarity=0.325 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcccCCCC--CCC-CccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMKVKEAG---LQDHIRLYLCDYRQLP--KSN-KYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~~~--~~~-~fD~v 700 (864)
+...+||=||-|.|..+..+.+.+ ..+|+.||+++..++.|++.+.... -.++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357799999999999999999874 4799999999999999999876432 1358999999986643 234 89999
Q ss_pred EEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEE
Q 002928 701 ISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+....-...+.. .-..+++.++++|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 985432111111 23689999999999999999976
No 415
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=1.3e-05 Score=93.80 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=33.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||+|+|||+||+.++++|.+|+|+||....||
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 899999999999999999999999999999887655
No 416
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.9e-06 Score=87.49 Aligned_cols=54 Identities=20% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.+.+.+..-|+++.. ..|.+++..++.+.|+|.+|+ ++|+.||+|+....
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 3555566666666888877 788888776657799999995 99999999998763
No 417
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.28 E-value=1e-06 Score=82.99 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=56.8
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C-CCCccEEEEch
Q 002928 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K-SNKYDRIISCE 704 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~-~~~fD~v~s~~ 704 (864)
..|+|+.||.|+.++.+|+. ..+|++||+++..++.|+.+++-.|+.++|+++++|+.++. . ...||+|++.-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999997 77999999999999999999999999999999999987764 1 12289999864
No 418
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.28 E-value=2.8e-05 Score=79.73 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKE---------------------------------- 674 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~---------------------------------- 674 (864)
...+||--|||.|.++..+|.+ |..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999998 99999999999886443332211
Q ss_pred -----cCCCCCeEEEEcccCCCC-CC---CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccc
Q 002928 675 -----AGLQDHIRLYLCDYRQLP-KS---NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE 745 (864)
Q Consensus 675 -----~~l~~~v~~~~~d~~~~~-~~---~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 745 (864)
...+.++....+|+.++- .+ ++||+|++.+.+... +|.-++++.|.++|||||..+- ...-.|..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN----~GPLlyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN----FGPLLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe----cCCccccC
Confidence 001236778888887776 33 799999999888777 7899999999999999996554 22211111
Q ss_pred ccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 746 HRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 746 ~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
.... .. -....-.+.+++...+.. .||+++..+.
T Consensus 209 ~~~~---~~---~~~sveLs~eEi~~l~~~-~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPMS---IP---NEMSVELSLEEIKELIEK-LGFEIEKEES 242 (270)
T ss_pred CCCC---CC---CCcccCCCHHHHHHHHHH-CCCEEEEEEE
Confidence 1000 00 000123578899887776 8999987665
No 419
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.7e-06 Score=85.71 Aligned_cols=251 Identities=16% Similarity=0.216 Sum_probs=139.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC-----------------C----eeeccceeeccCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID-----------------G----VDLDLCFMVFNRV 59 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~-----------------G----~~~d~G~~~~~~~ 59 (864)
.||+|+|-|+.=..-+..|+..|.+|+.+|+|+.-||-.+|.... | +.+|+-+-.+ .
T Consensus 5 yDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l--m 82 (440)
T KOG1439|consen 5 YDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL--M 82 (440)
T ss_pred eeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh--h
Confidence 389999999999988999999999999999999999988886431 0 2233333322 2
Q ss_pred CchHHHHHHHHcCCCcccc--cceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHH--HHHHHhHHHHHHHHHHh
Q 002928 60 TYPNMMEFFESLGVDMEIS--DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQM--LREIIKFNDDVLSYLED 135 (864)
Q Consensus 60 ~~~~~~~l~~~lG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 135 (864)
....+..++.+.|+..-.. ..+-......|+.+..+.. ...+++...+.+ -+...+|......+...
T Consensus 83 An~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t---------~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~ 153 (440)
T KOG1439|consen 83 ANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPAT---------EAEALTSPLMGLFEKRRVMKFLKFVLNYDEE 153 (440)
T ss_pred ccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCC---------HHHHhcCCccchhHHHHHHHHHHHHhhhhhh
Confidence 3444556666666654332 2222333455565555431 111111111111 12233444433343333
Q ss_pred hccCC-cCCC-CccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHH----HHHHHhhcCCCccCCCCcEEE
Q 002928 136 LENNA-DIDR-NETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFS----VLSFCRNHHALQIFGRPQWLT 209 (864)
Q Consensus 136 ~~~~~-~~~~-~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 209 (864)
....+ .... ..+..+++...+..+...+...+.+ +.+.. ++-.+.+... +..|+.+ +..++...+.+
T Consensus 154 ~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~--al~~d--d~~ld~p~~~~~~ri~~Y~~S---~~~yg~~~yly 226 (440)
T KOG1439|consen 154 DPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAI--ALLCD--DSYLDQPAKETLERILLYVRS---FARYGKSPYLY 226 (440)
T ss_pred ccccccccccccchHHHHHHHhcccccceeeeeeee--EEEec--chhccCccHHHHHHHHHHHHH---HhhcCCCccee
Confidence 22221 2212 3377888887766544332211111 11111 1112233322 2233333 23344444889
Q ss_pred ecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeEEEEECCCcEEecCEEEEccChH
Q 002928 210 VRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 210 ~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
|..|.+.++++++|...=.|++.-+|.++.+|... ++++.....+++...+..||+- |.+
T Consensus 227 P~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~d-pSY 287 (440)
T KOG1439|consen 227 PLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICD-PSY 287 (440)
T ss_pred cccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEec-Ccc
Confidence 99999999999999888789999999999999884 4443333334446677765554 444
No 420
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.7e-05 Score=75.90 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=90.8
Q ss_pred HHHHHHcCC--CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C
Q 002928 619 SLLIQKARV--SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL----P 692 (864)
Q Consensus 619 ~~~~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~ 692 (864)
+.+...+.. -.|.++||+-+|+|.+++.++.+...+++.||.+...+...+++++..++..+++++..|+... .
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 455555553 4789999999999999999999955689999999999999999999999888999999998743 2
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHH--HHhccccCcEEEEEEe
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGC--CESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~i~~~ 736 (864)
..++||+|+..-.++. +.-+....+.. -..+|+|+|.+++..-
T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2235999999887762 11111233333 4578999999999653
No 421
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.26 E-value=6.6e-07 Score=97.02 Aligned_cols=115 Identities=16% Similarity=0.260 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCC--CCC--CeEEEEcCCchHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 002928 615 MRKVSLLIQKARV--SKG--HEVLEIGCGWGTLAIEIVKQTGCKYTGI---TLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687 (864)
Q Consensus 615 ~~~~~~~~~~l~~--~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gi---d~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (864)
...++.|.+.+.. ..| ..+||||||.|.++.+|.++ +..+..+ |..+.|++.|.+| |++.-+. ..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--hhc
Confidence 3444555555544 222 47999999999999999997 5544443 3444577777665 5532221 222
Q ss_pred cCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 688 YRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 688 ~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
-..+| ++..||+|-|..++-..... -.-+|-++.|+|+|||+++++...
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecCCc
Confidence 35688 88999999998877555332 245789999999999999996543
No 422
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.26 E-value=4.2e-06 Score=82.93 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCeEEEEc
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYAEMKVK-------EAGL-QDHIRLYLC 686 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~-------~~~l-~~~v~~~~~ 686 (864)
..+..+++.+++++++..+|||||.|.....+|...+++ ++|||+.+...+.|+...+ ..|. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 455678889999999999999999999999988776766 9999999998887765332 2332 347888999
Q ss_pred ccCCCC----CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 687 DYRQLP----KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 687 d~~~~~----~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
|+.+.+ .-...|+|++++... + +++...+.+....||||-+++-
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 987643 114579999987643 2 3466667888888999877764
No 423
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.23 E-value=7.9e-06 Score=90.14 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=34.0
Q ss_pred cEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~GG 37 (864)
||+|||||+|||++|+.|+++ |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999887776
No 424
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.22 E-value=1.1e-05 Score=96.08 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCC-CCCCeEEEEcCCchHHHHHHHHh-----c--------------------------------------
Q 002928 616 RKVSLLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQ-----T-------------------------------------- 651 (864)
Q Consensus 616 ~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-----~-------------------------------------- 651 (864)
.....|+...+. +++..++|-+||+|.+.+.+|.. |
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 344566766666 67899999999999999998762 1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C--CCCccEEEEchhhhh-hCh-hhHHHHHHHHHhccc
Q 002928 652 GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K--SNKYDRIISCEMIEA-VGH-DYMEEFFGCCESLLA 726 (864)
Q Consensus 652 ~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~--~~~fD~v~s~~~~~~-~~~-~~~~~~l~~~~~~Lk 726 (864)
..+++|+|+++++++.|++++..+|+.+.|++.++|+.+++ + .++||+|+++-.+.. ++. .+...+++++.+.||
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 13699999999999999999999999888999999999886 2 357999999965532 221 344556555555555
Q ss_pred ---cCcEEEEEE
Q 002928 727 ---EHGLLLLQF 735 (864)
Q Consensus 727 ---pgG~l~i~~ 735 (864)
||+.+++.+
T Consensus 336 ~~~~g~~~~llt 347 (702)
T PRK11783 336 QQFGGWNAALFS 347 (702)
T ss_pred HhCCCCeEEEEe
Confidence 899887744
No 425
>PTZ00367 squalene epoxidase; Provisional
Probab=98.22 E-value=7.9e-06 Score=94.38 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=44.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~ 75 (864)
.||+|||||++|+++|+.|+++|++|+|+|++...-- .+. .|. . -.++..+.++++|+..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~----~r~------~G~-~----L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP----DRI------VGE-L----LQPGGVNALKELGMEE 93 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc----chh------hhh-h----cCHHHHHHHHHCCChh
Confidence 3899999999999999999999999999998652000 000 111 1 2566778889999864
No 426
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=8.5e-06 Score=93.46 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEec
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEK 31 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa 31 (864)
.||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3899999999999999999999999999998
No 427
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.21 E-value=4.9e-06 Score=89.89 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEE
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYAEMKVKEAGLQDH-IRLYL 685 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~ 685 (864)
....+.|++.+...++.+|||-.||+|.+...+.+. ...+++|+|+++.++..|+-++.-.+.... ..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 345567777778888999999999999999888762 468999999999999999887765554323 46888
Q ss_pred cccCCCC-C--CCCccEEEEchhhhhh--C----------------hh-hHHHHHHHHHhccccCcEEEEEEe
Q 002928 686 CDYRQLP-K--SNKYDRIISCEMIEAV--G----------------HD-YMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 686 ~d~~~~~-~--~~~fD~v~s~~~~~~~--~----------------~~-~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+|....+ . ...||+|+++..+.-. . .. .--.++..+.+.||+||++.+...
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 8865544 2 4789999998654322 0 01 112478999999999999877443
No 428
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.21 E-value=1.2e-06 Score=93.47 Aligned_cols=43 Identities=42% Similarity=0.689 Sum_probs=39.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT 43 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~ 43 (864)
++|+|||||+||++||+.|++.|++|+|+|+++.+||+.....
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 4799999999999999999999999999999999999865543
No 429
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.21 E-value=2.1e-05 Score=84.43 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSL 35 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~ 35 (864)
.||||||+|.+|..+|.+|+++| .+|+|||+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 38999999999999999999997 799999996653
No 430
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.20 E-value=2.2e-05 Score=77.93 Aligned_cols=99 Identities=25% Similarity=0.321 Sum_probs=74.2
Q ss_pred EEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEchhhhhhC
Q 002928 633 VLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY-RQLPKSNKYDRIISCEMIEAVG 710 (864)
Q Consensus 633 vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~v~s~~~~~~~~ 710 (864)
|.||||-.|.+.++|.++ .-.+++++|+++.-++.|++.++..++.++|+++++|- ..+++.+..|.|+..+|=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 689999999999999998 22379999999999999999999999999999999995 4555544479999888644
Q ss_pred hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 711 HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 711 ~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.-...++++....++..-.|+++.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeC
Confidence 346788888888887777888854
No 431
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.19 E-value=1.8e-05 Score=85.96 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc-EEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF-QRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~-~~~ad~VV~A~~~~ 270 (864)
..++.+...+.++++|++|+++++|++|+.++ |++.+|+ ++.++.||.|+...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 35788888888899999999999999997543 5666666 49999999997643
No 432
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.19 E-value=2.1e-05 Score=65.81 Aligned_cols=33 Identities=48% Similarity=0.698 Sum_probs=31.3
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~ 34 (864)
+|+|||||+.|+-.|..|++.|.+|+|+|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999999776
No 433
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.18 E-value=4.6e-05 Score=94.73 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=38.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCccee
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s 41 (864)
+||+|||||+|||+||+.|++.|++|+|+|+++.+||....
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 48999999999999999999999999999999999996643
No 434
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.17 E-value=3.6e-05 Score=83.54 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=81.5
Q ss_pred CccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccC-CCCcEEEecCChHHHHHHHHH
Q 002928 145 NETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIF-GRPQWLTVRSRSRSYVDKVIE 223 (864)
Q Consensus 145 ~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~La~ 223 (864)
..+..+|+...++++.+.+.++.+.+...|+.+. ++..+.. +..+. ..++.+.+.||+..++++|.+
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G-----------~vSla~a~~gl~sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAG-----------LVSLAGATGGLWSVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhh-----------heeeeeccCCceEecCCHHHHHHHHHH
Confidence 4678899999999999999999999999999763 3422111 11111 134666999999999999999
Q ss_pred HHhhcCceEEeCcceEEE-EEeCCe---EEEEECC--Cc-EEecCEEEEccChHH
Q 002928 224 LLESLGCQIKTGCEVRSV-LQYGEG---RIEIRGD--DF-QRVYDGCIMAVHAPD 271 (864)
Q Consensus 224 ~~~~~G~~I~~~~~V~~I-~~~~~~---~~V~~~~--G~-~~~ad~VV~A~~~~~ 271 (864)
.. |++| +|++|++| ...+++ +.|++.+ +. ...+|.||+|+|...
T Consensus 137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 76 8899 99999999 444443 4565543 22 345799999999864
No 435
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=3e-05 Score=88.58 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC-cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD-FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G-~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|++++.|++|+.+++.+.+...++ +++.+|.||+|+..
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC
Confidence 46778888889889999999999999987666665554322 36899999999864
No 436
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.17 E-value=1.6e-05 Score=80.61 Aligned_cols=38 Identities=39% Similarity=0.691 Sum_probs=35.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
.|+|||+|+|||+|+..+...|-.|+|+|++..+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 38999999999999999999988899999999999943
No 437
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.2e-05 Score=84.09 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=95.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K 693 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~ 693 (864)
.....+++++|.+|||+.++.|+=+.++|+. . +..|+++|.|+.-++..++++++.|+. ++.+.+.|...++ .
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc
Confidence 3446678999999999999999999999998 2 466899999999999999999999997 5889999987665 2
Q ss_pred C-CCccEEEEc------hhhhhh-------Ch-------hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 694 S-NKYDRIISC------EMIEAV-------GH-------DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 694 ~-~~fD~v~s~------~~~~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
. ++||.|+.- +++.-- .. +-..+++....++|||||.++.++++...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 2 359999963 233111 00 22467899999999999999998877544
No 438
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.15 E-value=4.8e-05 Score=88.33 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=32.7
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||+|+|||+||+.+++. .+|+|+||....||
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 899999999999999999987 89999999887766
No 439
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.14 E-value=3e-05 Score=91.57 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=45.2
Q ss_pred CcEEEEcCChhHHHHHHHHHh-CCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAK-AGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~-~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
.||+|||||++||++|+.|++ .|++|+|+|+.+..-- ..+ + .. -.+...++++++|+....
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~---~gr--------A-~g----l~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLE---LGQ--------A-DG----IACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCC---CCe--------e-eE----EChHHHHHHHhccchHHH
Confidence 489999999999999999999 5999999998753211 000 0 01 156778899999986543
No 440
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=4.7e-06 Score=82.20 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=73.7
Q ss_pred HHHHHHHHHcC-CCCC--CeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 002928 616 RKVSLLIQKAR-VSKG--HEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ 690 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~--~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (864)
-|+..+.++.+ ++++ .+|||+||+.|+++..+.++. ..+|+|+|+.+. ... .++.++++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 46778888888 5554 899999999999999999983 489999999986 111 256666777543
Q ss_pred CC---------C--CCCccEEEEchhhhhhCh---------hhHHHHHHHHHhccccCcEEEEEEec
Q 002928 691 LP---------K--SNKYDRIISCEMIEAVGH---------DYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 691 ~~---------~--~~~fD~v~s~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.. . .+.||+|+|-......+. +-....+.-+.+.|+|||.+++-.+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 1 268999999873322211 22344555667889999999986654
No 441
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.13 E-value=2.3e-05 Score=89.36 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEe-CCe-EEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQY-GEG-RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~-~~~-~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+. +++++. ..|..+..+ +++ +.|.+.+|..+.|+.||+|+....
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4666677777776 567765 567777665 445 478888888899999999998774
No 442
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.12 E-value=2.4e-05 Score=89.49 Aligned_cols=37 Identities=41% Similarity=0.726 Sum_probs=33.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
|||+|||||.+|+.||..|+++|.+|+|+|++. +||.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~ 38 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGA 38 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCc
Confidence 689999999999999999999999999999864 6773
No 443
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.10 E-value=9.4e-05 Score=86.32 Aligned_cols=33 Identities=33% Similarity=0.630 Sum_probs=31.1
Q ss_pred cEEEEcCChhHHHHHHHHH----hCCCeEEEEecCCC
Q 002928 2 RAAVIGGGISGLVSAYVLA----KAGVEVVLYEKEDS 34 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La----~~G~~V~vlEa~~~ 34 (864)
||+|||||+|||+||+.++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 78999999999775
No 444
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.09 E-value=1.7e-05 Score=80.57 Aligned_cols=167 Identities=11% Similarity=0.049 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCeEEEEcCC--chHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 002928 611 EVAQMRKVSLLIQKARVS-KGHEVLEIGCG--WGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685 (864)
Q Consensus 611 ~~aq~~~~~~~~~~l~~~-~~~~vLDiGcG--~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~ 685 (864)
..+.+..+.+..+.+.-. .=...|||||| +-.....+|++ ++++|+-+|.++-.+..++..+....- .+..+++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 334455666666666544 33689999999 44577788876 899999999999999999998875431 2389999
Q ss_pred cccCCCC---C----CCCcc-----EEEEchhhhhhCh-hhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccch
Q 002928 686 CDYRQLP---K----SNKYD-----RIISCEMIEAVGH-DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGF 752 (864)
Q Consensus 686 ~d~~~~~---~----~~~fD-----~v~s~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 752 (864)
+|+++.. . .+-+| .|+.+.++||+++ +++..+++.++..|.||.+|+|+..+..... .........
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-~~~~~~~~~ 206 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-ERAEALEAV 206 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHHHHH
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-HHHHHHHHH
Confidence 9998743 1 12333 7888999999987 6899999999999999999999877654321 111111122
Q ss_pred hhhcccCCCCCCCHHHHHHHHhcCCCcEEEE
Q 002928 753 IKEYIFPGGCLPSLNRITSAMTSSSRLCVED 783 (864)
Q Consensus 753 ~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~ 783 (864)
+.+- .....+.|.+++... . .||++.+
T Consensus 207 ~~~~-~~~~~~Rs~~ei~~~-f--~g~elve 233 (267)
T PF04672_consen 207 YAQA-GSPGRPRSREEIAAF-F--DGLELVE 233 (267)
T ss_dssp HHHC-CS----B-HHHHHHC-C--TTSEE-T
T ss_pred HHcC-CCCceecCHHHHHHH-c--CCCccCC
Confidence 2222 122345577777544 3 3888754
No 445
>PRK00536 speE spermidine synthase; Provisional
Probab=98.08 E-value=4.3e-05 Score=78.45 Aligned_cols=98 Identities=17% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc--C-CCCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA--G-LQDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~-l~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
+...+||=||.|-|+.++.+.+.+ .+|+-||+++++++.+++.+... + -+.|++++.. +.+. ..++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 455799999999999999999985 49999999999999999954431 1 2357887762 2221 236899999874
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
. ..+.+++.+++.|+|||.++.|.
T Consensus 148 ~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C-------CChHHHHHHHHhcCCCcEEEECC
Confidence 3 22688899999999999999964
No 446
>PTZ00058 glutathione reductase; Provisional
Probab=98.07 E-value=5.9e-05 Score=87.23 Aligned_cols=36 Identities=42% Similarity=0.625 Sum_probs=33.5
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
||+|||||.+|++||..+++.|.+|+|+|++ .+||.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt 85 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT 85 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence 8999999999999999999999999999985 57773
No 447
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.05 E-value=7.8e-05 Score=76.15 Aligned_cols=56 Identities=16% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
++-+.|-+++++.|+.+..+-+|.+.+..++++ .|.|.++. .++||.+|+|+.+..
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 788999999999999999999999999999998 67777765 468999999998763
No 448
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.04 E-value=3.8e-06 Score=102.55 Aligned_cols=40 Identities=43% Similarity=0.689 Sum_probs=37.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
|+|+|||||+|||+||++|+++|++|+|+|+.+.+||...
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 6899999999999999999999999999999999999643
No 449
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.04 E-value=5e-05 Score=79.64 Aligned_cols=123 Identities=20% Similarity=0.151 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
+.+..+-..+.-....+|||+|||.|..+..+.+. . -.+++++|.|+.|++.++..++................+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 34445544544445579999999999876555544 2 357999999999999999877643321111111111111112
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
....|+|++.++|..++.+....+++++.+.+.+ .++|.+...+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 2344999999999999887788889999888877 77776655443
No 450
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.03 E-value=4.3e-06 Score=101.05 Aligned_cols=40 Identities=45% Similarity=0.762 Sum_probs=37.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
+||+|||||+|||+||++|++.|++|+|+|+++.+||...
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 5899999999999999999999999999999999999664
No 451
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.03 E-value=1.7e-05 Score=82.40 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECC---C--cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGD---D--FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~---G--~~~~ad~VV~A~~~ 269 (864)
.++.+.+.+.++.+|.++++++.|+.++.+++ .+.|+..+ + ++++||.+++++.-
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 37888888888899999999999999999887 46555432 2 36899999999753
No 452
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=3.5e-05 Score=83.78 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=32.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC---CeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG---VEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G---~~V~vlEa~~~~GG 37 (864)
++|+|||+|++|+.+|.+|.+.- ..|.|+|....+|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 68999999999999999998761 23999999999887
No 453
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.99 E-value=5.2e-05 Score=78.40 Aligned_cols=208 Identities=18% Similarity=0.225 Sum_probs=109.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhC----CCeEEEEecCCCCCCcceeEee--CCeeeccceeeccCCCchHHHHHHHHcC-C
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVTI--DGVDLDLCFMVFNRVTYPNMMEFFESLG-V 73 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~----G~~V~vlEa~~~~GG~~~s~~~--~G~~~d~G~~~~~~~~~~~~~~l~~~lG-~ 73 (864)
|.+-|||+|+|||++|..|-+. |-++.|+|--+..||..-.... .|+++ .|+... ...+..++++++.+- +
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~-RGGRem-EnhfEc~WDlfrsIPSL 100 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVV-RGGREM-ENHFECLWDLFRSIPSL 100 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceee-cCcHHH-HHHHHHHHHHHhcCccc
Confidence 4578999999999999999886 5699999999999985433222 46777 343322 123455667776541 1
Q ss_pred Cccc---------------ccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhcc
Q 002928 74 DMEI---------------SDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLEN 138 (864)
Q Consensus 74 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (864)
+... ....+.+.-.+|+.+.-... + -+.+.. . ..+......
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~g~rv~ddg~------~-----tl~~~~---~----------~ei~kL~~t 156 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRRVDDDGS------F-----TLNNKA---R----------KEIIKLLMT 156 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeeccccccccccc------c-----ccChhh---H----------HHHHHHHcC
Confidence 1111 00011111112221111100 0 001110 1 111122222
Q ss_pred CCcCCCCccHHHHHHhcCCCHHHHHHHHhhhh-hcccCCChhhhhcCCHHHHH----HHHhhcCCCccCCCCcEEEecCC
Q 002928 139 NADIDRNETLGQFVETRGYSELFQKAYLVPVC-GSIWSCSSEKVMSCSAFSVL----SFCRNHHALQIFGRPQWLTVRSR 213 (864)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~gG 213 (864)
..+..++.++.+|+....+...+.- ++..+. .--|. ++..+. +++.....+..+.. --+++-.-
T Consensus 157 ~EE~L~~~tI~d~Fse~FF~sNFW~-yW~tmFAFekWh---------Sa~EmRRY~mRfihhi~gl~dfs~-lkftkyNQ 225 (587)
T COG4716 157 PEEKLDDLTIEDWFSEDFFKSNFWY-YWQTMFAFEKWH---------SAFEMRRYMMRFIHHISGLPDFSA-LKFTKYNQ 225 (587)
T ss_pred cHHhcCCccHHHhhhHhhhhhhHHH-HHHHHHhhhHHH---------HHHHHHHHHHHHHHHhcCCCcchh-hcccccch
Confidence 3333367888998887654433221 121111 11121 222222 22322222222221 12245566
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeC
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYG 245 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~ 245 (864)
+.+++..|...+++.|+++.+++.|..|+.+.
T Consensus 226 YeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 226 YESLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred HHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 78999999999999999999999999998764
No 454
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.98 E-value=2.8e-05 Score=84.74 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (864)
..+++.+++.++..++ +|||+-||.|.+++.+|+. ..+|+|||+++++++.|+++++.+++. +++|+.++++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch
Confidence 4677888888887766 8999999999999999997 779999999999999999999999985 899999887654
No 455
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.98 E-value=6.6e-05 Score=81.33 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCe-EEEEEC-----CCcEEecCEEEEccChHHHH
Q 002928 214 SRSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEG-RIEIRG-----DDFQRVYDGCIMAVHAPDAL 273 (864)
Q Consensus 214 ~~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~-~~V~~~-----~G~~~~ad~VV~A~~~~~~~ 273 (864)
++.+++.|.+.+.+. |++|++|++|+.|++.+++ |.|.+. +..++.|+.|++.+..+.+.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 469999999999988 8999999999999998766 988763 22479999999999888654
No 456
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.98 E-value=5.2e-06 Score=93.61 Aligned_cols=39 Identities=44% Similarity=0.688 Sum_probs=32.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
||||||||++|++||+.+|+.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 899999999999999999999999999999999999543
No 457
>PRK12831 putative oxidoreductase; Provisional
Probab=97.95 E-value=8.2e-06 Score=92.84 Aligned_cols=40 Identities=40% Similarity=0.542 Sum_probs=37.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
|||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999998653
No 458
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.94 E-value=0.00011 Score=90.47 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=31.7
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~ 34 (864)
||+|||||.|||+||+.+++.|.+|+|+||...
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 899999999999999999999999999999875
No 459
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.94 E-value=5.9e-05 Score=82.08 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=83.2
Q ss_pred CCeEEEEcCCchHHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchh
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEM 705 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~ 705 (864)
+-+|||+.||+|..++.++.+ .| .+|+++|++++.++.++++++.+++. ++++.+.|+..+. ...+||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 458999999999999999987 33 58999999999999999999988875 7899999987764 236799999865
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+ . .+..++..+.+.+++||.+++..
T Consensus 123 f-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 3 2 23578999999999999999963
No 460
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.94 E-value=8.7e-06 Score=98.01 Aligned_cols=40 Identities=48% Similarity=0.818 Sum_probs=37.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
|+|+|||||+|||+||++|+++|++|+|+|+++.+||...
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 6899999999999999999999999999999999999664
No 461
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.93 E-value=4.6e-05 Score=86.95 Aligned_cols=35 Identities=31% Similarity=0.598 Sum_probs=31.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC--CeEEEEecCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG--VEVVLYEKEDSL 35 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G--~~V~vlEa~~~~ 35 (864)
|+|+|||||++||++|..|++.| .+|+|+|+++.+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 78999999999999999999875 599999998864
No 462
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0002 Score=74.48 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=135.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC----------------C----eeeccceeeccCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID----------------G----VDLDLCFMVFNRVT 60 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~----------------G----~~~d~G~~~~~~~~ 60 (864)
.||+|+|-|+.=..-+..|+.+|.+|+.+|+++.-|+-.+|.... + +.+|+-+-.+ ..
T Consensus 7 yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l--~A 84 (434)
T COG5044 7 YDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFL--FA 84 (434)
T ss_pred ccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhh--cc
Confidence 389999999999999999999999999999999999988885431 1 3344444433 23
Q ss_pred chHHHHHHHHcCCCcccc--cceeeEEecCCCceeecCCCCCCchhhhhhhcCChHH-HHHHHHHHhHHHHHHHHHHhhc
Q 002928 61 YPNMMEFFESLGVDMEIS--DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYF-WQMLREIIKFNDDVLSYLEDLE 137 (864)
Q Consensus 61 ~~~~~~l~~~lG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (864)
...+..++.+.|+..-.. ..+-.....+++.+..+... .. .+ .++.. +..-+...+|.+.+..+.....
T Consensus 85 ~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne-~e-i~------~s~~lsL~eKr~vmrFl~~V~n~~~~~~ 156 (434)
T COG5044 85 NSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNE-AE-IF------TSPLLSLFEKRRVMRFLKWVSNYAEQKS 156 (434)
T ss_pred cchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccH-Hh-hh------cCCCcchhhHHHHHHHHHHHHhHHhhhh
Confidence 455666777777654332 22223333555555544310 00 00 00000 0011223344433333333222
Q ss_pred cCCcCCCCccHHHHHH-hcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHH
Q 002928 138 NNADIDRNETLGQFVE-TRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRS 216 (864)
Q Consensus 138 ~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 216 (864)
.......+....+++. ..+++....+.+.+.++ -.+ +.+.-..-..-.++.|+.+- ..++...+.+++-|.+.
T Consensus 157 ~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~-l~l--dl~~p~re~~erIl~Y~~Sf---~~yg~~pyLyp~YGl~E 230 (434)
T COG5044 157 TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIA-LSL--DLDIPAREALERILRYMRSF---GDYGKSPYLYPRYGLGE 230 (434)
T ss_pred hchhhhhcccHHHHHHHHHccCcchhhhhhhhhh-hhc--cccCCchHHHHHHHHHHHhh---cccCCCcceeeccCchh
Confidence 2222223233344443 33443332222222221 111 11000000111234455443 23445567889988999
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEc
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMA 266 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A 266 (864)
++++++|...=.|++.-+|+++.+|..... | +|.. ++.+..|.+||..
T Consensus 231 l~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 231 LSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred hhHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCC
Confidence 999999998888999999999999976555 3 2222 2336777777655
No 463
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.92 E-value=1e-05 Score=91.17 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=37.0
Q ss_pred CcEEEEcCChhHHHHHHHHHh--CCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAK--AGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~--~G~~V~vlEa~~~~GG~~~ 40 (864)
++|+|||||+|||+||..|++ .|++|+|+|+.+.+||..+
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 589999999999999999987 7999999999999999655
No 464
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.90 E-value=6.1e-05 Score=78.84 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+.+.++..|||||+|.|.++..+++. +.+|+++|+++.+++..+++.. ..++++++.+|+.++. .
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 456789999999999999999999999999999997 6899999999999999998765 2358999999999987 2
Q ss_pred C---CCccEEEEchhhhhhChhhHHHHHHHHHh
Q 002928 694 S---NKYDRIISCEMIEAVGHDYMEEFFGCCES 723 (864)
Q Consensus 694 ~---~~fD~v~s~~~~~~~~~~~~~~~l~~~~~ 723 (864)
. .....|+++-.. +++ ..++.++..
T Consensus 92 ~~~~~~~~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGH----HHHHHHHHH
T ss_pred HhhcCCceEEEEEecc-cch----HHHHHHHhh
Confidence 2 356688887665 442 345555554
No 465
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.89 E-value=3.1e-06 Score=79.93 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~ 707 (864)
...++||+|+|.|.++..++.. -.+|.++++|..|....+++ +..++. ..+.. .+-+||+|.|.+.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk--------~ynVl~--~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK--------NYNVLT--EIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc--------CCceee--ehhhhhcCceeehHHHHHHHH
Confidence 4579999999999999999886 45799999999998887754 222221 11222 335799999999987
Q ss_pred hhChhhHHHHHHHHHhcccc-CcEEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAE-HGLLLLQF 735 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 735 (864)
-. -++-++++.++.+|+| +|++++.-
T Consensus 181 Rc--~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 181 RC--FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hh--cChHHHHHHHHHHhccCCCcEEEEE
Confidence 66 4678999999999999 89988754
No 466
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.89 E-value=5.3e-05 Score=71.08 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=74.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHH-----hcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcccCCCCCCCCccE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVK-----QTGCKYTGITLSEEQLKYAEMKVKEAG--LQDHIRLYLCDYRQLPKSNKYDR 699 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~~~fD~ 699 (864)
..+..+|+|+|||-|.++..++. .++.+|++||.++..++.++++.++.+ +..++++..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 36788999999999999999999 678999999999999999999998877 54577777777665544466788
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
++....=--+ -+.+++...+ |+-.+++
T Consensus 103 ~vgLHaCG~L----s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGLHACGDL----SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEeecccch----HHHHHHHHHH---cCCCEEE
Confidence 8875332222 2444444444 5555444
No 467
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.88 E-value=0.00011 Score=74.42 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-----EEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-----RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-----~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..++..+.+.+..+|++|.+|-+|.+|...++. ++|.-..|+++++..||-++..+.
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 478888999999999999999999999886653 345445567888998888876553
No 468
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0001 Score=70.52 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~ 704 (864)
.+|.+||+||-|-|.....+.+.+..+=+-|+..++.++..+...- .-.++|.+..+-.++.. +++.||-|+-.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhccccccCcceeEeec
Confidence 6788999999999999999988866677889999999888776532 22357888877665543 678899999877
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.-++. ++...+.+.+.++|||+|++-.
T Consensus 178 y~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 YSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 66887 8899999999999999999876
No 469
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.85 E-value=0.00012 Score=83.01 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+. . .|++.+|+++.+|.||+|++.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 46777888889899999999999999963 2 456667878999999999864
No 470
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.84 E-value=0.00013 Score=76.84 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=94.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KS 694 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (864)
.....+...++.+|||+.++.|+=+.++++.. ..+|++.|+++.-+...++++++.|.. ++.+...|..... ..
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccc
Confidence 44555678999999999999999999999983 479999999999999999999999986 7888888887763 33
Q ss_pred CCccEEEEc------hhhhhhCh--------------hhHHHHHHHHHhcc----ccCcEEEEEEecCC
Q 002928 695 NKYDRIISC------EMIEAVGH--------------DYMEEFFGCCESLL----AEHGLLLLQFISVP 739 (864)
Q Consensus 695 ~~fD~v~s~------~~~~~~~~--------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~ 739 (864)
..||.|+.- +++..-++ +...++|+++.+.+ ||||+++..+.+..
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 469999973 22222111 12457899999999 99999999887643
No 471
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00027 Score=68.94 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=80.8
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
.|+.+|.++.. ++++++|+|+||-.|+++..++++. +..|+|+|+.|- ..-.+|.++++|+.+-+
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~d~~~~~ 98 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQGDITDED 98 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEeeeccCcc
Confidence 56677777777 5889999999999999999999983 345999999872 11236999999987754
Q ss_pred ---------CCCCccEEEEchh--------hhhhCh-hhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 693 ---------KSNKYDRIISCEM--------IEAVGH-DYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 ---------~~~~fD~v~s~~~--------~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
....+|+|+|-.. ..|.-. .-...+++-+..+|+|||.+++-.+..
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 2345799998542 223211 112455677888999999999976643
No 472
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00024 Score=69.05 Aligned_cols=103 Identities=28% Similarity=0.407 Sum_probs=75.1
Q ss_pred EEEEcCCchHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-CC-CCccEEEEchhh
Q 002928 633 VLEIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ--LP-KS-NKYDRIISCEMI 706 (864)
Q Consensus 633 vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~-~~fD~v~s~~~~ 706 (864)
++|+|||.|... .++.... ..++|+|+++.+++.++......+.. .+.+...|... ++ .. ..||.+.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444322 48999999999999965554332211 17888888776 55 33 489999555555
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 5552 788999999999999999997765443
No 473
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.80 E-value=1.1e-05 Score=71.82 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=46.0
Q ss_pred EEEcCCchHHHHHHHHh--cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEchhh
Q 002928 634 LEIGCGWGTLAIEIVKQ--TG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCEMI 706 (864)
Q Consensus 634 LDiGcG~G~~~~~la~~--~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~~~ 706 (864)
|||||..|..+..+++. .. .+++++|..+. .+.+++.+++.++.++++++.+|..+.- ..++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 69999999999888875 22 37999999996 4455555555677779999999986542 3478999998753
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|-. +.....++.+.+.|+|||.++++++
T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 110 3347789999999999999999763
No 474
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.80 E-value=1.8e-05 Score=90.38 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
.||+|||||++|++||..++++|++|+|+|+++.+||.|
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 389999999999999999999999999999877889854
No 475
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.79 E-value=2.5e-05 Score=86.66 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=35.4
Q ss_pred CcEEEEcCChhHHHHHHHHH-hCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLA-KAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La-~~G~~V~vlEa~~~~GG~~~ 40 (864)
++|+|||||+|||.||.+|+ +.|++|+|+|+.+.+||..+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR 80 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR 80 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence 47999999999999999865 67999999999999998443
No 476
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.78 E-value=0.00012 Score=71.42 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=85.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEchhh
Q 002928 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNKYDRIISCEMI 706 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~v~s~~~~ 706 (864)
.++|||||=+......-.. -..|+.||+++. .-.+.++|+.+.| ++++||+|++..++
T Consensus 53 lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 6999999986665543322 346999999861 2356888988865 46799999999999
Q ss_pred hhhCh-hhHHHHHHHHHhccccCcE-----EEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcE
Q 002928 707 EAVGH-DYMEEFFGCCESLLAEHGL-----LLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 707 ~~~~~-~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~ 780 (864)
..+|. ...-++++.+++.|+|+|. +++.. |..... +..+.+.+.+...|+. -||.
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl---P~~Cv~---------------NSRy~~~~~l~~im~~-LGf~ 175 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL---PLPCVT---------------NSRYMTEERLREIMES-LGFT 175 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe---CchHhh---------------cccccCHHHHHHHHHh-CCcE
Confidence 99984 4677899999999999999 77743 222110 0123355566666664 8999
Q ss_pred EEEEEec
Q 002928 781 VEDLENI 787 (864)
Q Consensus 781 v~~~~~~ 787 (864)
.+..+..
T Consensus 176 ~~~~~~~ 182 (219)
T PF11968_consen 176 RVKYKKS 182 (219)
T ss_pred EEEEEec
Confidence 8877654
No 477
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.78 E-value=2e-05 Score=97.34 Aligned_cols=40 Identities=38% Similarity=0.574 Sum_probs=37.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
++|+|||||+|||+||+.|+++|++|+|+|+.+.+||..+
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 5899999999999999999999999999999999998544
No 478
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.78 E-value=0.00019 Score=79.96 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 222 IELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 222 a~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
.+.+++.|++++++++|.+|+.+++++.|.+.+|+++.||.||+|+..
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 344555699999999999998877778888889989999999999764
No 479
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.78 E-value=0.00024 Score=79.55 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=39.3
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+++.|++|+++++|.+|+. ++.+.|++.+|+++.||.||+++...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 33444556999999999999976 55677888889899999999998653
No 480
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.77 E-value=2.3e-05 Score=93.38 Aligned_cols=40 Identities=43% Similarity=0.742 Sum_probs=37.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999543
No 481
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.76 E-value=2.6e-05 Score=85.17 Aligned_cols=36 Identities=42% Similarity=0.563 Sum_probs=33.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLG 36 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~G 36 (864)
+||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999877643
No 482
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.75 E-value=2.5e-05 Score=92.80 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=34.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
|+|+|||||+|||+||++|++.|++|+|+|+.+..|+
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 6899999999999999999999999999999876655
No 483
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.73 E-value=0.00025 Score=73.08 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCeEEEEcCCchHHH-HHHHHh--cCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcccCCCC-CCCCccEEEEch
Q 002928 630 GHEVLEIGCGWGTLA-IEIVKQ--TGCKYTGITLSEEQLKYAEMKVK-EAGLQDHIRLYLCDYRQLP-KSNKYDRIISCE 704 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~-~~la~~--~~~~v~gid~s~~~~~~a~~~~~-~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~ 704 (864)
..+|+=||||.=.++ +.++++ .++.|+++|++++.++.+++.++ ..++..+++|+.+|..+.+ .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999966665 555654 46789999999999999999888 5678889999999998776 346899999876
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
....- .+...++++++.+.++||..+++.
T Consensus 201 lVg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 55422 246799999999999999999984
No 484
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.73 E-value=0.0002 Score=75.09 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=72.7
Q ss_pred HHHHHHHHcC--------CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 002928 617 KVSLLIQKAR--------VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY 688 (864)
Q Consensus 617 ~~~~~~~~l~--------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (864)
|+..++..+. +.+|+++|||||++|+++..++++ |++|++||.++ +. ..+.. .++|+....|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~----~~L~~---~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MA----QSLMD---TGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cC----HhhhC---CCCEEEEeccC
Confidence 4555555554 368999999999999999999998 88999999654 21 12222 24899999886
Q ss_pred CCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccC
Q 002928 689 RQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 689 ~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
.... ..+.+|.|+|--+ +.+....+-+.+.|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 5544 3678999999744 45678888888888877
No 485
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.71 E-value=3.3e-05 Score=87.79 Aligned_cols=39 Identities=44% Similarity=0.597 Sum_probs=36.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
++|+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 589999999999999999999999999999999998854
No 486
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.71 E-value=0.00057 Score=66.98 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=90.9
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNK 696 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (864)
+.+.+++|.+||-+|..+|....+++.- +...|.+|+.|+...+..-..+++. .||--+.+|++.-. .-+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 4467899999999999999999999987 4679999999996655544444433 38988999987643 2358
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
.|+|++.-. .+ ++.+.+..++...||+||.+++..-...-+. ..... .+ ..+..+.|.+
T Consensus 144 VDvI~~DVa---Qp-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~---t~~p~-----~v--------f~~e~~~L~~- 202 (229)
T PF01269_consen 144 VDVIFQDVA---QP-DQARIAALNARHFLKPGGHLIISIKARSIDS---TADPE-----EV--------FAEEVKKLKE- 202 (229)
T ss_dssp EEEEEEE-S---ST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-S---SSSHH-----HH--------HHHHHHHHHC-
T ss_pred ccEEEecCC---Ch-HHHHHHHHHHHhhccCCcEEEEEEecCcccC---cCCHH-----HH--------HHHHHHHHHH-
Confidence 999998632 11 3466778899999999999998532211000 00000 00 1233456665
Q ss_pred CCcEEEEEEeccc
Q 002928 777 SRLCVEDLENIGI 789 (864)
Q Consensus 777 ~gf~v~~~~~~~~ 789 (864)
.||++.+..++.+
T Consensus 203 ~~~~~~e~i~LeP 215 (229)
T PF01269_consen 203 EGFKPLEQITLEP 215 (229)
T ss_dssp TTCEEEEEEE-TT
T ss_pred cCCChheEeccCC
Confidence 7999988777643
No 487
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.69 E-value=3.6e-05 Score=93.34 Aligned_cols=39 Identities=41% Similarity=0.572 Sum_probs=36.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
|||+|||||+|||+||++|+++|++|+|+|+.+.+||..
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l 470 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVL 470 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence 589999999999999999999999999999998899854
No 488
>PRK10742 putative methyltransferase; Provisional
Probab=97.69 E-value=0.00013 Score=73.31 Aligned_cols=90 Identities=12% Similarity=0.165 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEEEEccc
Q 002928 619 SLLIQKARVSKGH--EVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA------G--LQDHIRLYLCDY 688 (864)
Q Consensus 619 ~~~~~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~------~--l~~~v~~~~~d~ 688 (864)
+.+++.+++++|. +|||+=+|+|..+..++.+ ||+|+++|-++......++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 5778888899988 9999999999999999998 999999999999999888887764 2 224799999997
Q ss_pred CCCC--CCCCccEEEEchhhhhh
Q 002928 689 RQLP--KSNKYDRIISCEMIEAV 709 (864)
Q Consensus 689 ~~~~--~~~~fD~v~s~~~~~~~ 709 (864)
.++- ...+||+|+.--|+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 6653 23479999999888774
No 489
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.69 E-value=7.6e-05 Score=69.66 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=80.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhC
Q 002928 631 HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVG 710 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~ 710 (864)
+.+.|+|+|+|.++..+|+. .-+|++|+.+|.-.+.|++++.-.|+ ++++++.+|+++... +..|+|+|-..=..+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988886 67999999999999999999876676 489999999998874 5678888743222222
Q ss_pred hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 711 HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 711 ~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++.....+..+...||.++.++=+.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHH
Confidence 2444567777778889999887543
No 490
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=9.5e-05 Score=67.38 Aligned_cols=140 Identities=17% Similarity=0.147 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCeEEEEcCC-chHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcccCCCC---
Q 002928 620 LLIQKARVSKGHEVLEIGCG-WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQ--DHIRLYLCDYRQLP--- 692 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG-~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~--- 692 (864)
.+++.-+.-.|.+|||+|.| +|..++.+|.. +...|..+|=+++.++..++....+..+ .++.+...+.....
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 34444444457899999999 55555666666 7789999999999999888766543211 12222222322211
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHH
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (864)
....||.|++..++..- +....+.+.|+++|+|.|+.++..+-.. -|+..+.+.
T Consensus 100 eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg------------------------~sL~kF~de 153 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG------------------------QSLQKFLDE 153 (201)
T ss_pred hhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc------------------------chHHHHHHH
Confidence 33489999999887665 6678899999999999999877332111 134555555
Q ss_pred HhcCCCcEEEEEEe
Q 002928 773 MTSSSRLCVEDLEN 786 (864)
Q Consensus 773 l~~~~gf~v~~~~~ 786 (864)
... .||.+.-.++
T Consensus 154 ~~~-~gf~v~l~en 166 (201)
T KOG3201|consen 154 VGT-VGFTVCLEEN 166 (201)
T ss_pred HHh-ceeEEEeccc
Confidence 554 7999875544
No 491
>PRK10262 thioredoxin reductase; Provisional
Probab=97.67 E-value=4.1e-05 Score=83.20 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=34.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
+||+|||||++||+||..|+++|++|+|+|+. ..||.+.
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 58999999999999999999999999999964 5777543
No 492
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.66 E-value=1.9e-05 Score=75.03 Aligned_cols=67 Identities=31% Similarity=0.487 Sum_probs=51.0
Q ss_pred cEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCCCCcceeEeeCCeeeccceeeccC-CCchHHHHHHHHcCCCcccc
Q 002928 2 RAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR-VTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~lG~~~~~~ 78 (864)
||+|||||-+||||||..+++ ..+|.|+|++-.+|| |.+ +|++.|+. ...+...-+++++|++.+..
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG--------GaW--LGGQLFSAMvvRKPAhLFL~EigvpYede 147 (328)
T KOG2960|consen 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG--------GAW--LGGQLFSAMVVRKPAHLFLQEIGVPYEDE 147 (328)
T ss_pred ceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC--------ccc--ccchhhhhhhhcChHHHHHHHhCCCcccC
Confidence 899999999999999999965 589999999999998 433 35555542 22444555789999877543
No 493
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=0.00021 Score=67.39 Aligned_cols=155 Identities=10% Similarity=0.025 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHH------HHHHHHHHHcCCCCCeEEEEcccCCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQL------KYAEMKVKEAGLQDHIRLYLCDYRQL 691 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~------~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (864)
+++...++++|++|+|+=.|.|.++.-++.. +...|++.-..+... ...+...++... .|++.+-.+.-.+
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~ 117 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVAL 117 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCccccc
Confidence 4566678999999999999999999999886 445788876554311 111111222222 3566666665555
Q ss_pred CCCCCccEEEEchhhhhh-----ChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCH
Q 002928 692 PKSNKYDRIISCEMIEAV-----GHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSL 766 (864)
Q Consensus 692 ~~~~~fD~v~s~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 766 (864)
.+.+..|+++.....|-+ +.....++.+++++.|||||.+++.+..........-.. ... .-+.
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~----~~~-------ri~~ 186 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI----TLH-------RIDP 186 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh----hhc-------ccCh
Confidence 545667777764332222 234678899999999999999999886543322111000 011 1234
Q ss_pred HHHHHHHhcCCCcEEEEEEec
Q 002928 767 NRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 767 ~~~~~~l~~~~gf~v~~~~~~ 787 (864)
..+++..+. +||+++.-..+
T Consensus 187 a~V~a~vea-aGFkl~aeS~i 206 (238)
T COG4798 187 AVVIAEVEA-AGFKLEAESEI 206 (238)
T ss_pred HHHHHHHHh-hcceeeeeehh
Confidence 445555554 89998765443
No 494
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.65 E-value=4.5e-05 Score=87.32 Aligned_cols=39 Identities=41% Similarity=0.715 Sum_probs=36.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
|+|+|||||++||+||..|++.|++|+|+|+.+.+||..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL 182 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence 589999999999999999999999999999999999853
No 495
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.65 E-value=4.6e-05 Score=87.02 Aligned_cols=39 Identities=41% Similarity=0.674 Sum_probs=36.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
|+|+|||||++||++|+.|+++|++|+|+|+++.+||..
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 589999999999999999999999999999999998853
No 496
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.65 E-value=0.0011 Score=71.51 Aligned_cols=57 Identities=21% Similarity=0.100 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
...+++.+.+.++++|++|+++|+|..|+..++. ..|.+++|+++.+|+||+|..-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 4588999999999999999999999999998875 47888899899999999997543
No 497
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.65 E-value=4.5e-05 Score=90.55 Aligned_cols=39 Identities=33% Similarity=0.715 Sum_probs=37.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
|+|+|||||++||++|+.|++.|++|+|+|+++.+||..
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l 232 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM 232 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 589999999999999999999999999999999999954
No 498
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.65 E-value=0.00014 Score=78.89 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~GG 37 (864)
|+++||.|+++||.|..|.+.+ .+++.||+++.+..
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~W 40 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSW 40 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--T
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCc
Confidence 8999999999999999999886 99999999886443
No 499
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.64 E-value=4e-05 Score=85.56 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=38.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCccee
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s 41 (864)
++|+|||||++||+||..|+++|++|+|+|+.+.+||+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 57999999999999999999999999999999999995543
No 500
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.64 E-value=0.0005 Score=71.56 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCC-----CCCeEEEEcCCchHH-HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccc
Q 002928 616 RKVSLLIQKARVS-----KGHEVLEIGCGWGTL-AIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA-GLQDHIRLYLCDY 688 (864)
Q Consensus 616 ~~~~~~~~~l~~~-----~~~~vLDiGcG~G~~-~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~ 688 (864)
..+..+.+.+... ..-++||||||.-.+ .+..++.++++++|+|+++..++.|++.++.+ +|.++|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 3344455555432 246899999997754 45445558999999999999999999999999 9999999987642
Q ss_pred C-C----CC-CCCCccEEEEchhhhhhC
Q 002928 689 R-Q----LP-KSNKYDRIISCEMIEAVG 710 (864)
Q Consensus 689 ~-~----~~-~~~~fD~v~s~~~~~~~~ 710 (864)
. . +. .++.||..+|+-.|+.-.
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred ccccchhhhcccceeeEEecCCccccCh
Confidence 2 1 11 456899999999888764
Done!