Query 002928
Match_columns 864
No_of_seqs 667 out of 5950
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hem_A Cyclopropane-fatty-acyl 100.0 3.3E-45 1.1E-49 393.4 31.6 275 569-847 12-302 (302)
2 1kpg_A CFA synthase;, cyclopro 100.0 5E-42 1.7E-46 366.1 29.7 275 569-847 4-287 (287)
3 2fk8_A Methoxy mycolic acid sy 100.0 1E-40 3.6E-45 361.2 29.7 281 566-850 27-316 (318)
4 3bus_A REBM, methyltransferase 100.0 5.8E-32 2E-36 286.0 25.9 265 572-848 4-273 (273)
5 3i6d_A Protoporphyrinogen oxid 100.0 2.4E-31 8.1E-36 304.6 20.7 399 1-418 6-466 (470)
6 3nks_A Protoporphyrinogen oxid 100.0 5.4E-31 1.9E-35 302.1 23.5 397 1-420 3-474 (477)
7 2ivd_A PPO, PPOX, protoporphyr 100.0 8.7E-30 3E-34 292.2 29.7 394 1-419 17-472 (478)
8 3ka7_A Oxidoreductase; structu 100.0 2.4E-30 8.2E-35 292.2 24.4 391 1-418 1-425 (425)
9 2o57_A Putative sarcosine dime 100.0 3.5E-29 1.2E-33 268.0 31.0 269 568-850 14-296 (297)
10 3lov_A Protoporphyrinogen oxid 100.0 1.2E-29 3.9E-34 290.8 21.7 398 1-420 5-465 (475)
11 2b9w_A Putative aminooxidase; 100.0 4.1E-29 1.4E-33 281.9 24.3 389 1-417 7-423 (424)
12 4gde_A UDP-galactopyranose mut 100.0 4.2E-29 1.4E-33 289.3 22.3 395 2-420 12-479 (513)
13 3nrn_A Uncharacterized protein 100.0 2.1E-28 7.1E-33 275.7 24.0 382 1-420 1-406 (421)
14 2vvm_A Monoamine oxidase N; FA 100.0 3.9E-28 1.3E-32 279.6 26.6 389 1-418 40-483 (495)
15 1s3e_A Amine oxidase [flavin-c 100.0 9.9E-28 3.4E-32 277.6 29.1 397 1-418 5-452 (520)
16 1sez_A Protoporphyrinogen oxid 100.0 1.6E-27 5.3E-32 275.3 25.5 396 1-418 14-491 (504)
17 4dgk_A Phytoene dehydrogenase; 100.0 3.1E-27 1.1E-31 272.5 27.6 276 1-296 2-305 (501)
18 2yg5_A Putrescine oxidase; oxi 99.9 9.1E-27 3.1E-31 265.1 25.7 398 1-418 6-449 (453)
19 3vc1_A Geranyl diphosphate 2-C 99.9 6.1E-27 2.1E-31 252.1 20.2 251 568-847 57-311 (312)
20 4dsg_A UDP-galactopyranose mut 99.9 7.4E-26 2.5E-30 258.0 23.7 389 1-417 10-452 (484)
21 3k7m_X 6-hydroxy-L-nicotine ox 99.9 4E-25 1.4E-29 249.8 21.9 390 1-418 2-424 (431)
22 3ujc_A Phosphoethanolamine N-m 99.9 1.4E-24 4.7E-29 228.4 23.7 220 615-848 41-266 (266)
23 1rsg_A FMS1 protein; FAD bindi 99.9 4.6E-25 1.6E-29 254.7 16.2 276 1-310 9-309 (516)
24 2jae_A L-amino acid oxidase; o 99.9 2.3E-25 7.8E-30 256.0 12.9 287 1-309 12-334 (489)
25 1i8t_A UDP-galactopyranose mut 99.9 1.1E-24 3.8E-29 239.2 16.5 353 1-418 2-365 (367)
26 2bi7_A UDP-galactopyranose mut 99.9 1.9E-24 6.6E-29 238.6 18.4 351 1-418 4-368 (384)
27 1b37_A Protein (polyamine oxid 99.9 8.9E-24 3E-28 241.3 21.3 389 1-418 5-456 (472)
28 1v0j_A UDP-galactopyranose mut 99.9 4.2E-25 1.4E-29 245.7 9.9 359 1-418 8-385 (399)
29 3bkx_A SAM-dependent methyltra 99.9 4.9E-24 1.7E-28 225.3 13.4 229 607-846 21-274 (275)
30 3kkz_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 218.8 16.4 210 616-835 32-253 (267)
31 2iid_A L-amino-acid oxidase; f 99.9 1.3E-22 4.3E-27 233.7 23.0 396 1-419 34-483 (498)
32 4gut_A Lysine-specific histone 99.9 1.3E-22 4.5E-27 240.8 21.0 382 1-418 337-775 (776)
33 2xag_A Lysine-specific histone 99.9 2E-21 6.7E-26 232.0 24.8 210 205-419 562-828 (852)
34 2z3y_A Lysine-specific histone 99.9 3E-21 1E-25 228.2 24.7 209 205-418 391-656 (662)
35 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 5E-22 1.7E-26 217.0 16.8 204 206-418 103-340 (342)
36 1dl5_A Protein-L-isoaspartate 99.9 6.2E-25 2.1E-29 236.3 -11.7 236 590-848 29-281 (317)
37 4htf_A S-adenosylmethionine-de 99.9 9.3E-22 3.2E-26 208.9 11.7 218 616-852 56-283 (285)
38 3dli_A Methyltransferase; PSI- 99.9 8E-22 2.7E-26 203.7 9.6 177 620-816 31-223 (240)
39 1nkv_A Hypothetical protein YJ 99.8 1.2E-19 4.2E-24 189.3 24.3 166 615-788 22-188 (256)
40 2bcg_G Secretory pathway GDP d 99.8 1E-19 3.5E-24 205.8 25.1 256 1-270 12-299 (453)
41 3f4k_A Putative methyltransfer 99.8 3.1E-19 1.1E-23 186.3 23.2 215 616-847 32-256 (257)
42 1vl5_A Unknown conserved prote 99.8 1.6E-19 5.4E-24 188.9 16.6 183 611-802 19-203 (260)
43 3ayj_A Pro-enzyme of L-phenyla 99.8 3.4E-19 1.2E-23 206.5 20.9 105 205-310 337-496 (721)
44 3hdq_A UDP-galactopyranose mut 99.8 2.1E-19 7.3E-24 196.6 17.9 345 2-419 31-390 (397)
45 4gek_A TRNA (CMO5U34)-methyltr 99.8 1.9E-19 6.7E-24 186.7 16.3 113 627-740 68-183 (261)
46 1yvv_A Amine oxidase, flavin-c 99.8 1.2E-17 4.1E-22 181.7 28.8 298 1-419 3-326 (336)
47 3mgg_A Methyltransferase; NYSG 99.8 8.5E-19 2.9E-23 185.1 18.5 189 598-790 6-201 (276)
48 1ri5_A MRNA capping enzyme; me 99.8 2.9E-18 9.8E-23 183.2 18.5 217 567-795 13-258 (298)
49 1xxl_A YCGJ protein; structura 99.8 1.9E-18 6.4E-23 178.1 16.2 181 614-803 6-188 (239)
50 1pjz_A Thiopurine S-methyltran 99.8 1.9E-18 6.4E-23 173.0 15.4 154 618-788 11-177 (203)
51 3iv6_A Putative Zn-dependent a 99.8 1.3E-18 4.3E-23 178.7 13.6 155 617-779 33-213 (261)
52 1d5t_A Guanine nucleotide diss 99.8 1.2E-17 4.2E-22 187.5 22.9 254 1-270 7-289 (433)
53 3ou2_A SAM-dependent methyltra 99.8 4.5E-18 1.5E-22 172.7 16.8 167 618-791 34-209 (218)
54 3hnr_A Probable methyltransfer 99.8 2.5E-18 8.7E-23 174.8 13.9 163 618-789 34-203 (220)
55 3h2b_A SAM-dependent methyltra 99.8 3.4E-18 1.2E-22 171.5 14.6 141 630-788 42-183 (203)
56 3dtn_A Putative methyltransfer 99.8 1.9E-18 6.6E-23 177.5 13.1 165 618-786 32-213 (234)
57 3dh0_A SAM dependent methyltra 99.8 1.4E-17 4.7E-22 169.2 17.7 154 619-789 27-183 (219)
58 2yqz_A Hypothetical protein TT 99.7 2.2E-18 7.4E-23 180.5 11.1 170 626-802 36-211 (263)
59 2p7i_A Hypothetical protein; p 99.7 7.6E-18 2.6E-22 174.8 14.7 160 619-787 31-199 (250)
60 3lcc_A Putative methyl chlorid 99.7 1E-17 3.6E-22 172.1 15.3 154 618-789 56-209 (235)
61 3p1w_A Rabgdi protein; GDI RAB 99.7 1.4E-17 4.9E-22 185.5 17.3 252 2-269 22-312 (475)
62 3dlc_A Putative S-adenosyl-L-m 99.7 2.2E-18 7.6E-23 175.0 9.2 167 616-787 31-203 (219)
63 2e1m_A L-glutamate oxidase; L- 99.7 1.2E-17 4.1E-22 181.2 15.2 251 1-267 45-369 (376)
64 3ocj_A Putative exported prote 99.7 1E-17 3.5E-22 179.3 13.0 167 624-791 113-295 (305)
65 3jwg_A HEN1, methyltransferase 99.7 3.7E-17 1.3E-21 166.0 16.5 121 615-735 15-141 (219)
66 3g2m_A PCZA361.24; SAM-depende 99.7 7.3E-18 2.5E-22 180.0 11.6 170 616-788 70-275 (299)
67 1xtp_A LMAJ004091AAA; SGPP, st 99.7 4.4E-17 1.5E-21 169.6 17.1 164 610-787 74-238 (254)
68 3p2e_A 16S rRNA methylase; met 99.7 7.8E-19 2.7E-23 178.2 3.7 173 627-820 22-211 (225)
69 3jwh_A HEN1; methyltransferase 99.7 2.9E-17 1E-21 166.5 15.3 120 616-735 16-141 (217)
70 2p35_A Trans-aconitate 2-methy 99.7 4.7E-17 1.6E-21 169.9 17.1 162 615-785 19-188 (259)
71 3e23_A Uncharacterized protein 99.7 4.6E-17 1.6E-21 164.3 16.4 148 618-787 34-182 (211)
72 4fsd_A Arsenic methyltransfera 99.7 1.9E-17 6.4E-22 182.8 14.5 154 627-786 81-250 (383)
73 3fpf_A Mtnas, putative unchara 99.7 1.3E-17 4.3E-22 172.3 11.5 166 563-735 55-222 (298)
74 3ccf_A Cyclopropane-fatty-acyl 99.7 7.7E-17 2.6E-21 170.2 17.5 158 619-787 47-210 (279)
75 2ex4_A Adrenal gland protein A 99.7 8.4E-18 2.9E-22 173.5 9.4 147 628-787 78-225 (241)
76 2r3s_A Uncharacterized protein 99.7 6.7E-17 2.3E-21 175.6 16.3 172 616-789 150-325 (335)
77 2xvm_A Tellurite resistance pr 99.7 2.9E-16 1E-20 156.7 19.4 151 620-787 23-173 (199)
78 2gb4_A Thiopurine S-methyltran 99.7 1.2E-16 4.1E-21 164.8 16.8 146 626-788 65-228 (252)
79 3g5l_A Putative S-adenosylmeth 99.7 9.3E-17 3.2E-21 167.0 15.3 164 618-789 33-218 (253)
80 3l8d_A Methyltransferase; stru 99.7 1.4E-16 4.8E-21 164.5 16.0 147 628-787 52-200 (242)
81 3gwz_A MMCR; methyltransferase 99.7 5.6E-16 1.9E-20 170.1 21.0 164 616-786 189-355 (369)
82 3i53_A O-methyltransferase; CO 99.7 2.9E-16 9.8E-21 170.2 18.2 164 619-789 159-323 (332)
83 3ege_A Putative methyltransfer 99.7 3.4E-17 1.1E-21 171.1 10.2 156 616-787 21-178 (261)
84 3e8s_A Putative SAM dependent 99.7 5.4E-17 1.8E-21 165.7 11.1 156 617-786 40-208 (227)
85 3gu3_A Methyltransferase; alph 99.7 1.2E-16 4E-21 169.2 13.3 164 617-785 9-188 (284)
86 3pfg_A N-methyltransferase; N, 99.7 1.6E-16 5.5E-21 166.2 13.8 106 628-740 49-156 (263)
87 2a14_A Indolethylamine N-methy 99.7 8.6E-17 3E-21 168.0 11.1 151 626-788 52-239 (263)
88 3mcz_A O-methyltransferase; ad 99.7 2.8E-16 9.6E-21 171.9 15.8 165 618-784 167-336 (352)
89 3sm3_A SAM-dependent methyltra 99.7 2.6E-16 9E-21 161.5 14.3 159 627-787 28-207 (235)
90 3mq2_A 16S rRNA methyltransfer 99.7 2.4E-17 8.4E-22 167.2 6.1 180 620-812 18-210 (218)
91 1y8c_A S-adenosylmethionine-de 99.7 5E-16 1.7E-20 160.7 16.0 107 628-737 36-144 (246)
92 2p8j_A S-adenosylmethionine-de 99.7 3.5E-16 1.2E-20 157.5 14.3 156 627-785 21-181 (209)
93 3m70_A Tellurite resistance pr 99.7 1.3E-15 4.3E-20 161.5 19.0 148 621-786 112-259 (286)
94 1qzz_A RDMB, aclacinomycin-10- 99.7 6.2E-16 2.1E-20 170.7 17.1 167 619-789 172-341 (374)
95 4e2x_A TCAB9; kijanose, tetron 99.7 7.6E-17 2.6E-21 180.6 9.9 169 606-788 84-254 (416)
96 1ve3_A Hypothetical protein PH 99.7 9.7E-16 3.3E-20 156.4 17.3 117 616-737 27-144 (227)
97 2g72_A Phenylethanolamine N-me 99.7 2.6E-16 8.8E-21 167.1 13.1 198 571-788 17-257 (289)
98 3bkw_A MLL3908 protein, S-aden 99.7 5.5E-16 1.9E-20 160.1 14.5 162 620-789 34-216 (243)
99 3dp7_A SAM-dependent methyltra 99.7 5.2E-16 1.8E-20 170.0 15.1 157 628-786 178-341 (363)
100 3bgv_A MRNA CAP guanine-N7 met 99.7 5.3E-16 1.8E-20 166.7 14.8 181 618-799 21-244 (313)
101 3g5t_A Trans-aconitate 3-methy 99.7 8.3E-16 2.8E-20 164.0 16.2 110 625-737 32-151 (299)
102 3i9f_A Putative type 11 methyl 99.7 2.2E-16 7.4E-21 153.4 10.5 144 619-789 7-150 (170)
103 2y1w_A Histone-arginine methyl 99.7 5.4E-17 1.9E-21 176.3 6.6 177 618-799 39-223 (348)
104 3cc8_A Putative methyltransfer 99.7 6.5E-16 2.2E-20 158.0 14.4 174 620-807 24-204 (230)
105 1x19_A CRTF-related protein; m 99.7 2.1E-15 7.3E-20 165.1 19.2 166 617-788 178-349 (359)
106 2kw5_A SLR1183 protein; struct 99.6 1E-15 3.5E-20 153.2 14.5 149 620-788 23-172 (202)
107 1zx0_A Guanidinoacetate N-meth 99.6 6E-17 2.1E-21 166.4 5.6 158 577-737 6-172 (236)
108 3grz_A L11 mtase, ribosomal pr 99.6 1.8E-15 6.1E-20 151.8 16.0 130 627-789 58-187 (205)
109 1tw3_A COMT, carminomycin 4-O- 99.6 1.3E-15 4.6E-20 167.0 16.4 164 619-788 173-340 (360)
110 2ip2_A Probable phenazine-spec 99.6 1.1E-15 3.8E-20 165.8 15.4 167 617-788 156-323 (334)
111 3njr_A Precorrin-6Y methylase; 99.6 2.6E-15 8.9E-20 150.1 16.4 113 617-737 43-156 (204)
112 3ofk_A Nodulation protein S; N 99.6 7.9E-16 2.7E-20 155.8 12.8 115 619-737 41-156 (216)
113 4hg2_A Methyltransferase type 99.6 2.9E-16 1E-20 162.1 9.6 109 618-739 30-139 (257)
114 3mti_A RRNA methylase; SAM-dep 99.6 2.2E-15 7.6E-20 148.4 15.1 110 626-737 19-137 (185)
115 3b3j_A Histone-arginine methyl 99.6 1.3E-16 4.4E-21 179.5 6.6 184 617-803 146-335 (480)
116 3bxo_A N,N-dimethyltransferase 99.6 2.8E-15 9.6E-20 154.3 16.2 106 628-740 39-146 (239)
117 3lst_A CALO1 methyltransferase 99.6 1.5E-15 5.1E-20 165.5 14.2 163 618-787 173-336 (348)
118 3g07_A 7SK snRNA methylphospha 99.6 7E-16 2.4E-20 163.6 10.9 154 628-786 45-268 (292)
119 3d2l_A SAM-dependent methyltra 99.6 1.1E-14 3.9E-19 150.2 19.4 114 617-736 23-138 (243)
120 2vdw_A Vaccinia virus capping 99.6 1.1E-15 3.8E-20 162.0 12.0 159 628-788 47-247 (302)
121 3e05_A Precorrin-6Y C5,15-meth 99.6 7.6E-15 2.6E-19 147.1 17.3 115 616-736 27-143 (204)
122 3dje_A Fructosyl amine: oxygen 99.6 1.8E-15 6.1E-20 170.9 14.1 195 214-420 160-385 (438)
123 3cgg_A SAM-dependent methyltra 99.6 6.2E-15 2.1E-19 146.3 16.2 135 620-786 38-174 (195)
124 2aot_A HMT, histamine N-methyl 99.6 1.1E-15 3.6E-20 162.5 11.2 154 620-784 42-218 (292)
125 2i62_A Nicotinamide N-methyltr 99.6 2.8E-15 9.7E-20 156.9 13.5 153 626-790 53-242 (265)
126 1vlm_A SAM-dependent methyltra 99.6 2E-15 6.8E-20 153.2 11.5 140 630-787 48-188 (219)
127 1wzn_A SAM-dependent methyltra 99.6 1E-14 3.5E-19 151.4 16.7 120 615-737 27-147 (252)
128 3dxy_A TRNA (guanine-N(7)-)-me 99.6 1.8E-15 6.2E-20 152.6 10.5 106 629-735 34-150 (218)
129 4a6d_A Hydroxyindole O-methylt 99.6 1E-14 3.5E-19 158.7 16.4 167 618-788 168-335 (353)
130 3nyc_A D-arginine dehydrogenas 99.6 3.5E-14 1.2E-18 157.1 21.0 194 215-422 154-361 (381)
131 3fzg_A 16S rRNA methylase; met 99.6 8.7E-15 3E-19 139.0 13.6 110 620-735 42-152 (200)
132 2qe6_A Uncharacterized protein 99.6 1.2E-14 4.2E-19 152.0 16.3 164 611-783 58-238 (274)
133 3evz_A Methyltransferase; NYSG 99.6 1.7E-14 5.7E-19 147.5 16.8 136 624-786 50-205 (230)
134 3eey_A Putative rRNA methylase 99.6 5.2E-15 1.8E-19 147.4 12.6 117 621-737 14-141 (197)
135 3ps9_A TRNA 5-methylaminomethy 99.6 1.6E-14 5.6E-19 171.6 19.1 57 215-271 417-473 (676)
136 3hm2_A Precorrin-6Y C5,15-meth 99.6 6.5E-15 2.2E-19 144.0 12.7 116 615-737 11-129 (178)
137 3p9n_A Possible methyltransfer 99.6 9.6E-15 3.3E-19 144.3 13.3 109 628-738 43-156 (189)
138 4df3_A Fibrillarin-like rRNA/T 99.6 4.2E-15 1.4E-19 149.1 10.7 143 623-789 71-219 (233)
139 2avn_A Ubiquinone/menaquinone 99.6 1.6E-14 5.5E-19 150.6 15.3 144 564-738 11-155 (260)
140 3orh_A Guanidinoacetate N-meth 99.6 1.7E-15 5.8E-20 155.2 7.6 104 627-734 58-169 (236)
141 3pvc_A TRNA 5-methylaminomethy 99.6 1.7E-14 5.9E-19 171.6 17.3 56 215-270 412-468 (689)
142 3reo_A (ISO)eugenol O-methyltr 99.6 1.5E-14 5.2E-19 158.4 15.4 160 617-788 190-356 (368)
143 2gs9_A Hypothetical protein TT 99.6 7.5E-15 2.6E-19 148.0 12.0 143 618-774 26-170 (211)
144 3thr_A Glycine N-methyltransfe 99.6 6.7E-15 2.3E-19 156.6 12.2 118 619-737 47-177 (293)
145 3lbf_A Protein-L-isoaspartate 99.6 8.5E-15 2.9E-19 147.5 12.2 113 615-737 63-176 (210)
146 3htx_A HEN1; HEN1, small RNA m 99.6 3.5E-14 1.2E-18 162.2 18.3 120 616-737 708-836 (950)
147 1dus_A MJ0882; hypothetical pr 99.6 2.6E-14 8.8E-19 141.7 15.4 118 618-737 41-159 (194)
148 3ggd_A SAM-dependent methyltra 99.6 6E-15 2.1E-19 152.4 10.8 151 627-787 54-219 (245)
149 3p9c_A Caffeic acid O-methyltr 99.6 2E-14 6.9E-19 157.1 15.5 160 617-788 188-354 (364)
150 3uwp_A Histone-lysine N-methyl 99.6 9.9E-15 3.4E-19 155.8 12.3 125 615-742 159-295 (438)
151 1xdz_A Methyltransferase GIDB; 99.6 2E-14 6.7E-19 147.9 13.4 131 626-787 67-202 (240)
152 2nxc_A L11 mtase, ribosomal pr 99.6 2E-14 6.9E-19 148.8 13.5 128 627-788 118-245 (254)
153 2esr_A Methyltransferase; stru 99.5 2.1E-14 7.2E-19 140.3 10.6 120 616-738 17-141 (177)
154 1fp1_D Isoliquiritigenin 2'-O- 99.5 3.1E-14 1.1E-18 156.5 13.1 160 617-787 196-360 (372)
155 1l3i_A Precorrin-6Y methyltran 99.5 4.6E-14 1.6E-18 139.6 13.1 115 616-736 20-135 (192)
156 3lpm_A Putative methyltransfer 99.5 7.7E-14 2.6E-18 145.2 15.1 115 620-734 39-175 (259)
157 3dr5_A Putative O-methyltransf 99.5 4E-14 1.4E-18 143.0 12.1 120 613-737 40-165 (221)
158 3u81_A Catechol O-methyltransf 99.5 2.4E-14 8.3E-19 145.3 9.6 110 626-738 55-173 (221)
159 3ntv_A MW1564 protein; rossman 99.5 3.3E-14 1.1E-18 145.3 10.7 113 621-738 63-179 (232)
160 2uzz_A N-methyl-L-tryptophan o 99.5 9.6E-14 3.3E-18 153.0 15.1 190 215-422 149-360 (372)
161 1ryi_A Glycine oxidase; flavop 99.5 3.2E-14 1.1E-18 157.5 11.2 192 215-422 164-365 (382)
162 2pxx_A Uncharacterized protein 99.5 6.4E-14 2.2E-18 141.4 12.4 108 627-738 40-162 (215)
163 1y56_B Sarcosine oxidase; dehy 99.5 1.7E-13 5.9E-18 151.6 16.6 194 214-421 148-357 (382)
164 2h00_A Methyltransferase 10 do 99.5 7.8E-15 2.7E-19 152.5 5.3 166 616-787 50-238 (254)
165 2yxd_A Probable cobalt-precorr 99.5 1.8E-13 6E-18 134.3 14.8 134 616-785 22-155 (183)
166 3dme_A Conserved exported prot 99.5 7.9E-14 2.7E-18 153.4 13.7 196 214-416 149-367 (369)
167 2frn_A Hypothetical protein PH 99.5 1.8E-13 6.2E-18 143.6 15.5 130 627-783 123-253 (278)
168 2ift_A Putative methylase HI07 99.5 4E-14 1.4E-18 141.2 9.8 107 629-738 53-166 (201)
169 2fhp_A Methylase, putative; al 99.5 6.6E-14 2.3E-18 138.0 11.0 120 616-738 30-157 (187)
170 2b3t_A Protein methyltransfera 99.5 2E-13 6.8E-18 143.6 15.3 117 616-734 97-237 (276)
171 4azs_A Methyltransferase WBDD; 99.5 2.8E-14 9.5E-19 165.2 9.5 111 628-740 65-178 (569)
172 2gag_B Heterotetrameric sarcos 99.5 5.5E-13 1.9E-17 148.8 19.7 190 215-421 174-377 (405)
173 3lec_A NADB-rossmann superfami 99.5 2.2E-13 7.6E-18 135.9 14.6 106 627-736 19-126 (230)
174 3g89_A Ribosomal RNA small sub 99.5 1.4E-13 4.9E-18 141.6 13.7 101 627-734 78-183 (249)
175 4dcm_A Ribosomal RNA large sub 99.5 1.9E-13 6.6E-18 149.1 15.3 131 599-735 198-334 (375)
176 2oln_A NIKD protein; flavoprot 99.5 2.1E-13 7E-18 151.8 15.9 56 215-271 153-208 (397)
177 3gdh_A Trimethylguanosine synt 99.5 2.3E-15 7.7E-20 155.3 0.0 104 628-734 77-180 (241)
178 2fyt_A Protein arginine N-meth 99.5 1.2E-13 4.2E-18 149.1 13.6 112 619-733 54-169 (340)
179 3kr9_A SAM-dependent methyltra 99.5 2.9E-13 9.8E-18 135.0 15.0 106 627-736 13-120 (225)
180 3dmg_A Probable ribosomal RNA 99.5 2E-13 7E-18 148.9 15.2 118 615-735 217-340 (381)
181 2fca_A TRNA (guanine-N(7)-)-me 99.5 9.3E-14 3.2E-18 139.8 11.5 107 628-735 37-153 (213)
182 1u2z_A Histone-lysine N-methyl 99.5 1E-13 3.5E-18 152.0 12.6 122 615-739 228-363 (433)
183 1yub_A Ermam, rRNA methyltrans 99.5 5.9E-16 2E-20 159.7 -4.9 189 616-831 16-244 (245)
184 2yxe_A Protein-L-isoaspartate 99.5 8.2E-14 2.8E-18 140.8 10.9 114 616-738 64-180 (215)
185 3id6_C Fibrillarin-like rRNA/T 99.5 4.9E-13 1.7E-17 134.6 16.4 146 619-788 63-217 (232)
186 3r0q_C Probable protein argini 99.5 9.9E-14 3.4E-18 152.1 12.2 116 619-736 53-170 (376)
187 3q7e_A Protein arginine N-meth 99.5 8.4E-14 2.9E-18 151.1 11.4 109 625-734 62-172 (349)
188 3mb5_A SAM-dependent methyltra 99.5 1.4E-13 4.7E-18 143.1 12.2 111 618-735 82-194 (255)
189 1yb2_A Hypothetical protein TA 99.5 1.4E-13 4.8E-18 144.6 12.3 136 618-787 99-237 (275)
190 3m33_A Uncharacterized protein 99.5 1.1E-13 3.7E-18 141.0 11.1 118 628-787 47-167 (226)
191 1yzh_A TRNA (guanine-N(7)-)-me 99.5 2.4E-13 8.4E-18 137.1 13.3 107 628-735 40-156 (214)
192 1fbn_A MJ fibrillarin homologu 99.5 1.2E-13 4.3E-18 140.9 10.8 108 619-734 61-177 (230)
193 3kkj_A Amine oxidase, flavin-c 99.5 9.1E-12 3.1E-16 131.1 25.5 57 1-57 3-59 (336)
194 1fp2_A Isoflavone O-methyltran 99.5 1.9E-13 6.4E-18 149.2 12.7 154 622-787 179-341 (352)
195 3gnl_A Uncharacterized protein 99.5 4.1E-13 1.4E-17 135.0 14.0 106 627-736 19-126 (244)
196 3giw_A Protein of unknown func 99.5 1.9E-13 6.6E-18 139.3 11.8 167 611-783 59-243 (277)
197 2pwy_A TRNA (adenine-N(1)-)-me 99.5 4.6E-13 1.6E-17 139.4 14.9 135 618-786 85-223 (258)
198 3q87_B N6 adenine specific DNA 99.5 2.5E-13 8.6E-18 131.4 11.9 121 628-787 22-149 (170)
199 1vbf_A 231AA long hypothetical 99.5 2.2E-13 7.4E-18 139.3 12.0 112 615-738 56-168 (231)
200 1nt2_A Fibrillarin-like PRE-rR 99.5 3.5E-13 1.2E-17 135.1 13.1 104 625-735 53-161 (210)
201 3tfw_A Putative O-methyltransf 99.5 2.4E-13 8.1E-18 140.4 12.1 108 626-738 60-173 (248)
202 1jsx_A Glucose-inhibited divis 99.5 2.3E-13 7.9E-18 136.5 11.7 99 629-734 65-164 (207)
203 2fpo_A Methylase YHHF; structu 99.4 2.1E-13 7E-18 136.1 10.9 114 620-737 44-162 (202)
204 3duw_A OMT, O-methyltransferas 99.4 1.4E-13 4.8E-18 139.9 9.7 107 627-738 56-170 (223)
205 3bzb_A Uncharacterized protein 99.4 1.2E-12 3.9E-17 137.8 16.8 149 616-788 66-238 (281)
206 1g6q_1 HnRNP arginine N-methyl 99.4 3.1E-13 1.1E-17 145.4 12.7 114 620-734 29-144 (328)
207 2gf3_A MSOX, monomeric sarcosi 99.4 3.1E-13 1E-17 150.0 12.9 192 215-422 150-367 (389)
208 2ozv_A Hypothetical protein AT 99.4 2.2E-13 7.6E-18 141.5 11.0 115 621-735 28-170 (260)
209 2gpy_A O-methyltransferase; st 99.4 2.1E-13 7.1E-18 139.6 10.5 113 620-737 45-162 (233)
210 1o9g_A RRNA methyltransferase; 99.4 1.6E-13 5.3E-18 142.2 9.6 120 616-735 38-214 (250)
211 2ipx_A RRNA 2'-O-methyltransfe 99.4 4.8E-13 1.6E-17 136.9 13.0 107 622-735 70-182 (233)
212 1ws6_A Methyltransferase; stru 99.4 2.1E-13 7.2E-18 132.2 9.2 113 620-739 30-151 (171)
213 3tr6_A O-methyltransferase; ce 99.4 2.2E-13 7.4E-18 138.7 9.3 108 627-739 62-178 (225)
214 4dzr_A Protein-(glutamine-N5) 99.4 8.4E-14 2.9E-18 140.5 6.2 118 615-734 15-163 (215)
215 4hc4_A Protein arginine N-meth 99.4 3.2E-13 1.1E-17 145.7 10.6 107 627-734 81-188 (376)
216 1jg1_A PIMT;, protein-L-isoasp 99.4 3.4E-13 1.2E-17 138.2 10.1 114 615-737 77-191 (235)
217 3ckk_A TRNA (guanine-N(7)-)-me 99.4 4.7E-13 1.6E-17 136.5 10.9 108 627-735 44-168 (235)
218 3r3h_A O-methyltransferase, SA 99.4 7.7E-14 2.6E-18 143.2 5.1 109 627-740 58-175 (242)
219 1zg3_A Isoflavanone 4'-O-methy 99.4 5.2E-13 1.8E-17 146.0 11.8 156 620-787 182-347 (358)
220 1vg0_A RAB proteins geranylger 99.4 6.6E-12 2.3E-16 143.8 21.0 113 144-266 313-432 (650)
221 1o54_A SAM-dependent O-methylt 99.4 1E-12 3.4E-17 138.3 13.3 135 619-786 102-238 (277)
222 2pjd_A Ribosomal RNA small sub 99.4 5.3E-13 1.8E-17 144.7 11.2 115 619-736 186-304 (343)
223 1ixk_A Methyltransferase; open 99.4 8.1E-13 2.8E-17 141.1 12.4 118 620-738 109-249 (315)
224 2zfu_A Nucleomethylin, cerebra 99.4 5E-13 1.7E-17 134.9 9.9 121 621-788 58-180 (215)
225 1i1n_A Protein-L-isoaspartate 99.4 1.2E-12 4.3E-17 133.1 12.7 112 618-737 64-184 (226)
226 2igt_A SAM dependent methyltra 99.4 8E-13 2.7E-17 141.7 11.5 115 620-737 143-274 (332)
227 3c3p_A Methyltransferase; NP_9 99.4 5.2E-13 1.8E-17 134.3 9.3 105 628-738 55-163 (210)
228 1sui_A Caffeoyl-COA O-methyltr 99.4 4E-13 1.4E-17 138.3 8.6 106 628-738 78-193 (247)
229 3hp7_A Hemolysin, putative; st 99.4 2.2E-13 7.7E-18 141.1 6.5 152 616-786 71-231 (291)
230 3k6r_A Putative transferase PH 99.4 1.8E-12 6.1E-17 134.0 13.1 106 627-738 123-228 (278)
231 1nv8_A HEMK protein; class I a 99.4 1.5E-12 5.2E-17 136.7 12.7 117 617-734 111-248 (284)
232 1i9g_A Hypothetical protein RV 99.4 1.6E-12 5.4E-17 137.1 12.5 113 617-736 87-204 (280)
233 2yvl_A TRMI protein, hypotheti 99.4 3.1E-12 1.1E-16 132.2 14.2 111 618-736 80-191 (248)
234 2hnk_A SAM-dependent O-methylt 99.4 6.1E-13 2.1E-17 136.7 8.6 109 625-738 56-184 (239)
235 3ajd_A Putative methyltransfer 99.4 1.8E-12 6.2E-17 135.7 12.3 117 621-738 75-214 (274)
236 1af7_A Chemotaxis receptor met 99.4 1.3E-12 4.5E-17 135.3 10.9 105 629-733 105-250 (274)
237 3axb_A Putative oxidoreductase 99.4 2.7E-13 9.3E-18 153.4 6.1 196 214-422 180-421 (448)
238 3tma_A Methyltransferase; thum 99.4 4.5E-12 1.6E-16 138.1 14.3 119 616-735 190-317 (354)
239 3c3y_A Pfomt, O-methyltransfer 99.3 1.4E-12 4.7E-17 133.6 9.5 105 628-737 69-183 (237)
240 1r18_A Protein-L-isoaspartate( 99.3 1.9E-12 6.4E-17 131.9 10.2 112 617-736 70-195 (227)
241 3bwc_A Spermidine synthase; SA 99.3 3.3E-12 1.1E-16 135.6 12.4 109 627-735 93-210 (304)
242 1g8a_A Fibrillarin-like PRE-rR 99.3 3.3E-12 1.1E-16 130.1 11.8 106 622-734 66-177 (227)
243 2pbf_A Protein-L-isoaspartate 99.3 2.7E-12 9.1E-17 130.8 11.2 111 619-737 68-195 (227)
244 3a27_A TYW2, uncharacterized p 99.3 2.9E-12 9.8E-17 133.9 11.1 106 626-738 116-222 (272)
245 2ld4_A Anamorsin; methyltransf 99.3 3.5E-12 1.2E-16 124.3 10.6 162 623-851 6-171 (176)
246 2bm8_A Cephalosporin hydroxyla 99.3 1E-12 3.4E-17 134.3 6.9 98 628-736 80-188 (236)
247 3cbg_A O-methyltransferase; cy 99.3 1.7E-12 5.7E-17 132.6 8.3 107 628-739 71-186 (232)
248 1pj5_A N,N-dimethylglycine oxi 99.3 4.3E-11 1.5E-15 145.5 21.9 56 215-271 151-207 (830)
249 2vdv_E TRNA (guanine-N(7)-)-me 99.3 5.2E-12 1.8E-16 130.2 11.6 107 627-734 47-172 (246)
250 2avd_A Catechol-O-methyltransf 99.3 2.8E-12 9.7E-17 130.8 9.1 107 627-738 67-182 (229)
251 2plw_A Ribosomal RNA methyltra 99.3 7.3E-12 2.5E-16 124.8 11.5 108 617-736 9-155 (201)
252 1p91_A Ribosomal RNA large sub 99.3 5.6E-12 1.9E-16 132.0 10.9 96 628-738 84-181 (269)
253 3lcv_B Sisomicin-gentamicin re 99.3 8.4E-12 2.9E-16 124.1 11.2 106 628-736 131-237 (281)
254 1wy7_A Hypothetical protein PH 99.3 3.8E-11 1.3E-15 120.2 16.4 104 623-732 43-146 (207)
255 2b25_A Hypothetical protein; s 99.3 9.3E-12 3.2E-16 134.7 12.6 112 618-736 94-220 (336)
256 3adn_A Spermidine synthase; am 99.3 5.1E-12 1.7E-16 132.8 10.0 109 628-736 82-199 (294)
257 3sso_A Methyltransferase; macr 99.3 2.7E-12 9.2E-17 136.9 7.6 108 616-737 204-326 (419)
258 1zq9_A Probable dimethyladenos 99.3 1.1E-11 3.9E-16 130.1 11.3 115 615-732 14-144 (285)
259 3gjy_A Spermidine synthase; AP 99.3 9.5E-12 3.2E-16 130.4 10.5 106 631-737 91-202 (317)
260 2yxl_A PH0851 protein, 450AA l 99.3 3.6E-11 1.2E-15 134.9 15.9 119 620-739 250-393 (450)
261 3opn_A Putative hemolysin; str 99.3 3.9E-13 1.3E-17 136.5 -0.2 152 616-787 23-184 (232)
262 3v76_A Flavoprotein; structura 99.3 2.6E-11 8.8E-16 134.6 14.4 62 209-271 126-187 (417)
263 1ej0_A FTSJ; methyltransferase 99.3 7.4E-12 2.5E-16 121.9 8.6 110 617-738 9-139 (180)
264 3tm4_A TRNA (guanine N2-)-meth 99.3 4.9E-11 1.7E-15 130.5 15.8 153 575-733 163-327 (373)
265 3dou_A Ribosomal RNA large sub 99.2 1.7E-11 5.8E-16 120.7 10.4 109 616-737 11-141 (191)
266 2o07_A Spermidine synthase; st 99.2 1.4E-11 4.8E-16 130.3 10.4 111 627-737 93-211 (304)
267 2b78_A Hypothetical protein SM 99.2 3E-11 1E-15 132.6 13.3 108 628-736 211-332 (385)
268 3m6w_A RRNA methylase; rRNA me 99.2 2.4E-11 8.2E-16 134.6 12.4 118 620-739 92-233 (464)
269 2qm3_A Predicted methyltransfe 99.2 2.2E-10 7.6E-15 125.4 19.8 102 627-733 170-275 (373)
270 3m4x_A NOL1/NOP2/SUN family pr 99.2 1.8E-11 6.2E-16 135.5 10.9 120 620-740 96-239 (456)
271 4dmg_A Putative uncharacterize 99.2 2.4E-11 8.1E-16 132.9 11.6 107 628-737 213-328 (393)
272 1xj5_A Spermidine synthase 1; 99.2 1.7E-11 5.8E-16 131.1 10.1 110 626-735 117-235 (334)
273 2frx_A Hypothetical protein YE 99.2 3.2E-11 1.1E-15 135.2 12.7 117 622-739 108-250 (479)
274 3frh_A 16S rRNA methylase; met 99.2 1.5E-10 5.1E-15 114.3 15.8 103 628-735 104-206 (253)
275 1ne2_A Hypothetical protein TA 99.2 4.1E-11 1.4E-15 119.3 11.8 92 626-725 48-139 (200)
276 2wa2_A Non-structural protein 99.2 2E-12 7E-17 134.4 2.3 117 616-737 69-195 (276)
277 2oxt_A Nucleoside-2'-O-methylt 99.2 2.3E-12 7.8E-17 133.3 2.2 117 616-737 61-187 (265)
278 2b2c_A Spermidine synthase; be 99.2 9.2E-12 3.1E-16 132.0 6.7 107 628-735 107-222 (314)
279 1uir_A Polyamine aminopropyltr 99.2 3E-11 1E-15 128.8 10.5 109 628-736 76-196 (314)
280 1sqg_A SUN protein, FMU protei 99.2 7E-11 2.4E-15 131.9 13.9 119 619-739 236-378 (429)
281 2i7c_A Spermidine synthase; tr 99.2 2.9E-11 9.9E-16 126.9 10.0 109 627-735 76-192 (283)
282 2pt6_A Spermidine synthase; tr 99.2 1.3E-11 4.5E-16 131.6 7.3 107 628-735 115-230 (321)
283 1mjf_A Spermidine synthase; sp 99.2 1.4E-11 4.7E-16 129.3 6.7 108 628-736 74-194 (281)
284 2as0_A Hypothetical protein PH 99.2 4.6E-11 1.6E-15 132.2 10.9 108 628-737 216-337 (396)
285 3c0k_A UPF0064 protein YCCW; P 99.2 4.8E-11 1.7E-15 131.9 10.8 110 628-737 219-341 (396)
286 1inl_A Spermidine synthase; be 99.2 5.3E-11 1.8E-15 125.7 10.5 108 628-735 89-205 (296)
287 3v97_A Ribosomal RNA large sub 99.2 7.1E-11 2.4E-15 138.9 12.4 106 629-736 539-658 (703)
288 1iy9_A Spermidine synthase; ro 99.2 4.9E-11 1.7E-15 124.5 9.7 108 628-735 74-189 (275)
289 3cgv_A Geranylgeranyl reductas 99.2 2.7E-11 9.2E-16 134.6 8.0 56 216-271 103-162 (397)
290 1wxx_A TT1595, hypothetical pr 99.2 5.6E-11 1.9E-15 130.6 10.3 105 629-737 209-327 (382)
291 2h1r_A Dimethyladenosine trans 99.1 1.2E-10 4.1E-15 123.2 11.2 112 615-730 28-154 (299)
292 2yx1_A Hypothetical protein MJ 99.1 1.2E-10 4E-15 125.5 11.3 101 628-738 194-294 (336)
293 2f8l_A Hypothetical protein LM 99.1 2.1E-10 7E-15 124.4 12.5 116 619-736 119-257 (344)
294 2i0z_A NAD(FAD)-utilizing dehy 99.1 4.2E-10 1.4E-14 126.7 15.4 59 213-271 132-191 (447)
295 2nyu_A Putative ribosomal RNA 99.1 1.1E-10 3.8E-15 115.7 8.7 108 618-737 10-147 (196)
296 3gru_A Dimethyladenosine trans 99.1 5.9E-10 2E-14 116.4 14.3 90 615-708 36-126 (295)
297 3k0b_A Predicted N6-adenine-sp 99.1 4.2E-10 1.4E-14 123.1 13.7 120 616-735 188-350 (393)
298 3ldg_A Putative uncharacterize 99.1 8.9E-10 3.1E-14 119.9 15.4 120 616-735 181-343 (384)
299 2jjq_A Uncharacterized RNA met 99.1 6.6E-10 2.3E-14 122.8 14.6 107 617-735 281-387 (425)
300 3ldu_A Putative methylase; str 99.1 3.9E-10 1.3E-14 123.2 12.4 120 616-735 182-344 (385)
301 3c4n_A Uncharacterized protein 99.1 2.2E-11 7.5E-16 135.5 2.3 56 215-271 172-236 (405)
302 1uwv_A 23S rRNA (uracil-5-)-me 99.1 7.4E-10 2.5E-14 123.6 14.4 112 615-734 272-388 (433)
303 2p41_A Type II methyltransfera 99.1 4.9E-11 1.7E-15 126.0 4.4 115 617-737 70-193 (305)
304 2xyq_A Putative 2'-O-methyl tr 99.1 7.3E-10 2.5E-14 115.2 12.9 96 625-736 59-172 (290)
305 2cmg_A Spermidine synthase; tr 99.1 1.7E-10 5.7E-15 119.2 7.6 98 628-735 71-171 (262)
306 3rp8_A Flavoprotein monooxygen 99.1 1.8E-09 6.2E-14 120.2 16.4 53 216-270 128-180 (407)
307 2okc_A Type I restriction enzy 99.1 2.7E-10 9.2E-15 127.8 9.7 121 616-736 158-308 (445)
308 2gqf_A Hypothetical protein HI 99.0 2.1E-09 7.1E-14 118.8 16.4 58 213-271 107-168 (401)
309 1qam_A ERMC' methyltransferase 99.0 3.6E-10 1.2E-14 115.8 9.4 85 615-704 16-102 (244)
310 3oz2_A Digeranylgeranylglycero 99.0 4.2E-10 1.4E-14 124.7 9.0 36 2-37 6-41 (397)
311 3g3e_A D-amino-acid oxidase; F 99.0 3.6E-12 1.2E-16 139.2 -7.7 182 215-420 142-334 (351)
312 2vou_A 2,6-dihydroxypyridine h 99.0 5.6E-09 1.9E-13 115.8 17.4 54 216-271 100-153 (397)
313 3nlc_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 125.7 10.2 57 215-271 220-277 (549)
314 2b9e_A NOL1/NOP2/SUN domain fa 99.0 4E-09 1.4E-13 111.3 14.1 117 620-738 93-237 (309)
315 2x3n_A Probable FAD-dependent 99.0 2.7E-09 9.2E-14 118.5 13.2 62 216-277 108-173 (399)
316 2ih2_A Modification methylase 99.0 9.3E-10 3.2E-14 123.1 9.4 112 616-737 26-166 (421)
317 3da1_A Glycerol-3-phosphate de 99.0 2.6E-09 8.8E-14 123.5 13.2 58 214-271 169-232 (561)
318 3b5i_A S-adenosyl-L-methionine 98.9 1.4E-07 4.9E-12 101.3 25.4 173 615-788 33-299 (374)
319 1y0p_A Fumarate reductase flav 98.9 1.8E-08 6.2E-13 117.1 19.8 56 215-270 255-316 (571)
320 1qo8_A Flavocytochrome C3 fuma 98.9 7.4E-09 2.5E-13 120.2 16.3 58 214-271 249-312 (566)
321 3tqs_A Ribosomal RNA small sub 98.9 4.7E-09 1.6E-13 107.5 12.8 87 615-706 15-106 (255)
322 4gqb_A Protein arginine N-meth 98.9 4.1E-09 1.4E-13 120.2 13.3 137 583-732 319-464 (637)
323 3nix_A Flavoprotein/dehydrogen 98.9 3.1E-09 1.1E-13 118.9 12.2 56 216-271 107-166 (421)
324 4at0_A 3-ketosteroid-delta4-5a 98.9 1.1E-08 3.7E-13 117.2 16.9 58 213-270 200-263 (510)
325 3gwf_A Cyclohexanone monooxyge 98.9 3E-09 1E-13 122.1 11.6 53 218-270 90-146 (540)
326 2qa2_A CABE, polyketide oxygen 98.9 1.3E-08 4.3E-13 116.0 16.6 62 216-277 108-173 (499)
327 4ap3_A Steroid monooxygenase; 98.9 3E-09 1E-13 122.3 11.4 38 2-39 23-60 (549)
328 2r6z_A UPF0341 protein in RSP 98.9 1.2E-09 4.1E-14 112.4 7.0 114 621-737 75-218 (258)
329 2qa1_A PGAE, polyketide oxygen 98.9 5.5E-09 1.9E-13 119.1 13.0 62 216-277 107-172 (500)
330 3fut_A Dimethyladenosine trans 98.9 3.6E-09 1.2E-13 109.2 10.3 110 615-734 33-144 (271)
331 3alj_A 2-methyl-3-hydroxypyrid 98.9 1.9E-08 6.6E-13 110.7 16.6 53 216-271 108-160 (379)
332 4hb9_A Similarities with proba 98.9 7.7E-09 2.6E-13 115.2 13.4 51 217-270 114-165 (412)
333 3bt7_A TRNA (uracil-5-)-methyl 98.9 3E-09 1E-13 116.1 9.7 111 615-736 200-327 (369)
334 3i3l_A Alkylhalidase CMLS; fla 98.9 6.4E-09 2.2E-13 120.4 12.7 56 216-271 129-188 (591)
335 2qcu_A Aerobic glycerol-3-phos 98.9 1.1E-08 3.6E-13 117.0 14.2 58 214-271 148-210 (501)
336 2rgh_A Alpha-glycerophosphate 98.9 2.7E-08 9.2E-13 115.1 16.9 57 215-271 188-250 (571)
337 2dul_A N(2),N(2)-dimethylguano 98.8 7.1E-09 2.4E-13 112.6 10.7 100 629-735 47-164 (378)
338 3cvo_A Methyltransferase-like 98.8 1.7E-08 5.9E-13 98.3 12.2 99 629-736 30-155 (202)
339 2qfm_A Spermine synthase; sper 98.8 3.3E-09 1.1E-13 112.3 7.6 110 628-737 187-316 (364)
340 3ihg_A RDME; flavoenzyme, anth 98.8 1.1E-08 3.8E-13 118.1 12.6 61 216-276 121-189 (535)
341 1m6y_A S-adenosyl-methyltransf 98.8 3.5E-09 1.2E-13 111.1 7.5 85 618-704 15-106 (301)
342 3axs_A Probable N(2),N(2)-dime 98.8 3.9E-09 1.3E-13 114.5 8.0 102 628-735 51-158 (392)
343 1rp0_A ARA6, thiazole biosynth 98.8 2.6E-08 8.7E-13 104.8 14.1 37 2-38 41-78 (284)
344 4a9w_A Monooxygenase; baeyer-v 98.8 1E-08 3.5E-13 111.7 11.3 54 216-270 77-131 (357)
345 3fmw_A Oxygenase; mithramycin, 98.8 6.9E-09 2.4E-13 119.9 10.3 62 216-277 149-214 (570)
346 1k0i_A P-hydroxybenzoate hydro 98.8 1.3E-08 4.5E-13 112.6 12.2 56 216-271 104-163 (394)
347 3e1t_A Halogenase; flavoprotei 98.8 1.1E-08 3.8E-13 117.2 11.1 56 216-271 112-172 (512)
348 2xdo_A TETX2 protein; tetracyc 98.8 2.9E-08 9.8E-13 110.1 13.8 54 216-271 129-182 (398)
349 1w4x_A Phenylacetone monooxyge 98.8 1.4E-08 4.9E-13 117.0 11.7 38 2-39 18-55 (542)
350 3c96_A Flavin-containing monoo 98.8 3.7E-08 1.3E-12 109.6 14.6 55 216-271 108-169 (410)
351 2zbw_A Thioredoxin reductase; 98.8 1.3E-08 4.3E-13 110.0 10.5 53 217-269 67-119 (335)
352 3uox_A Otemo; baeyer-villiger 98.8 5.8E-09 2E-13 119.8 7.9 38 2-39 11-48 (545)
353 1d4d_A Flavocytochrome C fumar 98.8 9.9E-08 3.4E-12 110.6 17.7 57 214-270 254-316 (572)
354 3f8d_A Thioredoxin reductase ( 98.8 1.9E-08 6.5E-13 107.9 10.6 53 217-270 72-124 (323)
355 2gv8_A Monooxygenase; FMO, FAD 98.8 2.3E-08 8E-13 112.5 11.4 54 217-270 117-176 (447)
356 3lzw_A Ferredoxin--NADP reduct 98.7 1.3E-08 4.5E-13 109.7 8.9 53 216-269 68-121 (332)
357 3o0h_A Glutathione reductase; 98.7 1.5E-08 5.2E-13 115.2 9.7 55 215-269 232-286 (484)
358 2efj_A 3,7-dimethylxanthine me 98.7 4.1E-07 1.4E-11 97.7 20.0 155 630-788 53-293 (384)
359 2bry_A NEDD9 interacting prote 98.7 3.6E-08 1.2E-12 112.2 12.6 55 216-270 167-229 (497)
360 3atr_A Conserved archaeal prot 98.7 8.1E-08 2.8E-12 108.3 15.3 56 216-271 101-162 (453)
361 3ab1_A Ferredoxin--NADP reduct 98.7 1.8E-08 6.2E-13 110.0 9.7 54 217-270 76-130 (360)
362 3fg2_P Putative rubredoxin red 98.7 4.4E-08 1.5E-12 108.7 12.7 56 214-269 183-239 (404)
363 3uzu_A Ribosomal RNA small sub 98.7 3.8E-08 1.3E-12 102.2 11.2 86 616-707 29-125 (279)
364 3ua3_A Protein arginine N-meth 98.7 2.1E-08 7E-13 113.5 9.6 102 630-732 410-531 (745)
365 2ar0_A M.ecoki, type I restric 98.7 2.9E-08 9.9E-13 113.2 10.9 147 581-736 126-313 (541)
366 3d1c_A Flavin-containing putat 98.7 4.5E-08 1.5E-12 107.2 11.6 54 216-270 89-142 (369)
367 3ftd_A Dimethyladenosine trans 98.7 3.6E-08 1.2E-12 100.8 10.0 86 615-706 17-105 (249)
368 2bs2_A Quinol-fumarate reducta 98.7 9.8E-08 3.3E-12 111.6 14.7 57 215-271 158-220 (660)
369 2aqj_A Tryptophan halogenase, 98.7 1.5E-07 5.1E-12 108.6 16.1 56 215-271 165-222 (538)
370 3v97_A Ribosomal RNA large sub 98.7 6.3E-08 2.1E-12 113.9 13.0 120 616-735 177-347 (703)
371 2wdq_A Succinate dehydrogenase 98.7 1.8E-07 6.3E-12 108.4 16.6 57 215-271 143-206 (588)
372 3lxd_A FAD-dependent pyridine 98.7 1E-07 3.6E-12 106.1 13.8 56 214-269 193-249 (415)
373 2oyr_A UPF0341 protein YHIQ; a 98.7 7.3E-09 2.5E-13 105.8 3.8 107 619-729 76-194 (258)
374 2h88_A Succinate dehydrogenase 98.7 2.7E-07 9.2E-12 107.1 17.2 57 215-271 155-217 (621)
375 3oc4_A Oxidoreductase, pyridin 98.7 8.9E-08 3.1E-12 107.9 12.7 54 215-269 189-242 (452)
376 3jsk_A Cypbp37 protein; octame 98.7 1.3E-07 4.6E-12 100.1 12.9 38 1-38 80-119 (344)
377 4dna_A Probable glutathione re 98.7 7.9E-08 2.7E-12 108.7 11.9 55 214-269 210-266 (463)
378 3itj_A Thioredoxin reductase 1 98.6 6.4E-08 2.2E-12 104.5 10.5 53 217-270 86-141 (338)
379 3iwa_A FAD-dependent pyridine 98.6 3.8E-08 1.3E-12 111.7 9.0 56 214-269 201-256 (472)
380 3ll7_A Putative methyltransfer 98.6 2.1E-08 7.3E-13 108.8 6.0 75 628-704 92-171 (410)
381 3khk_A Type I restriction-modi 98.6 4.3E-08 1.5E-12 111.5 8.8 146 581-736 202-396 (544)
382 2gmh_A Electron transfer flavo 98.6 1.9E-07 6.6E-12 108.3 14.4 56 216-271 145-217 (584)
383 2xve_A Flavin-containing monoo 98.6 1.3E-07 4.3E-12 106.8 12.4 39 1-39 3-47 (464)
384 2yqu_A 2-oxoglutarate dehydrog 98.6 1.3E-07 4.5E-12 106.6 12.4 57 214-270 207-263 (455)
385 2q0l_A TRXR, thioredoxin reduc 98.6 1.9E-07 6.4E-12 99.6 12.8 51 219-270 63-113 (311)
386 2weu_A Tryptophan 5-halogenase 98.6 2.2E-07 7.5E-12 106.6 13.6 56 215-271 173-230 (511)
387 1mo9_A ORF3; nucleotide bindin 98.6 1.7E-07 5.8E-12 107.6 12.4 55 215-269 255-314 (523)
388 2ywl_A Thioredoxin reductase r 98.6 2.9E-07 9.9E-12 89.4 12.3 52 217-270 58-109 (180)
389 2e4g_A Tryptophan halogenase; 98.6 1.7E-07 5.9E-12 108.2 12.3 56 215-271 194-252 (550)
390 1ges_A Glutathione reductase; 98.6 2.2E-07 7.5E-12 104.5 12.6 55 215-269 208-263 (450)
391 1xdi_A RV3303C-LPDA; reductase 98.6 6.7E-08 2.3E-12 110.4 8.3 55 215-269 223-277 (499)
392 2pyx_A Tryptophan halogenase; 98.6 4.9E-07 1.7E-11 103.9 15.5 55 216-271 176-233 (526)
393 2r9z_A Glutathione amide reduc 98.6 2.6E-07 8.8E-12 104.4 12.9 55 215-269 207-262 (463)
394 2cul_A Glucose-inhibited divis 98.6 2.6E-07 9E-12 93.8 11.7 54 216-270 69-124 (232)
395 2r0c_A REBC; flavin adenine di 98.6 3.3E-07 1.1E-11 105.7 14.0 59 216-277 139-203 (549)
396 2e5v_A L-aspartate oxidase; ar 98.6 4E-07 1.4E-11 102.8 14.3 55 215-271 119-176 (472)
397 1qyr_A KSGA, high level kasuga 98.6 2.8E-08 9.4E-13 101.7 3.9 85 616-706 8-100 (252)
398 2gjc_A Thiazole biosynthetic e 98.5 4E-07 1.4E-11 96.0 12.7 37 2-38 67-105 (326)
399 2zxi_A TRNA uridine 5-carboxym 98.5 4.7E-07 1.6E-11 103.5 14.1 54 216-270 124-179 (637)
400 2q7v_A Thioredoxin reductase; 98.5 2.9E-07 9.8E-12 98.9 11.8 37 1-38 9-45 (325)
401 3urh_A Dihydrolipoyl dehydroge 98.5 1.3E-07 4.3E-12 107.9 9.3 55 215-269 239-298 (491)
402 1m6e_X S-adenosyl-L-methionnin 98.5 4.3E-07 1.5E-11 96.8 12.5 158 629-787 51-280 (359)
403 3s5w_A L-ornithine 5-monooxyge 98.5 4E-07 1.4E-11 103.0 13.1 36 2-37 32-72 (463)
404 1chu_A Protein (L-aspartate ox 98.5 4.7E-07 1.6E-11 103.9 13.8 56 216-271 139-208 (540)
405 3evf_A RNA-directed RNA polyme 98.5 5.3E-08 1.8E-12 97.9 5.1 118 616-737 61-186 (277)
406 3fbs_A Oxidoreductase; structu 98.5 3.6E-07 1.2E-11 96.5 12.0 52 218-270 59-111 (297)
407 1vdc_A NTR, NADPH dependent th 98.5 1.6E-07 5.6E-12 101.1 9.2 52 217-270 72-123 (333)
408 3ics_A Coenzyme A-disulfide re 98.5 1.3E-07 4.4E-12 110.4 8.8 53 215-269 228-280 (588)
409 3cty_A Thioredoxin reductase; 98.5 4.4E-07 1.5E-11 97.1 12.1 49 220-270 77-125 (319)
410 4fk1_A Putative thioredoxin re 98.5 3.2E-07 1.1E-11 97.4 10.9 35 2-37 8-42 (304)
411 3ces_A MNMG, tRNA uridine 5-ca 98.5 7.7E-07 2.6E-11 102.1 14.6 54 216-270 125-180 (651)
412 1kf6_A Fumarate reductase flav 98.5 1E-06 3.6E-11 102.2 16.0 57 215-271 134-197 (602)
413 3lkd_A Type I restriction-modi 98.5 3.6E-07 1.2E-11 103.6 11.7 121 616-736 204-359 (542)
414 2qae_A Lipoamide, dihydrolipoy 98.5 2.9E-07 9.8E-12 104.3 11.0 55 215-269 215-274 (468)
415 3lad_A Dihydrolipoamide dehydr 98.5 2.3E-07 8E-12 105.3 10.1 55 215-269 221-278 (476)
416 3o4f_A Spermidine synthase; am 98.5 7.6E-07 2.6E-11 91.7 12.2 110 628-737 82-200 (294)
417 2qy6_A UPF0209 protein YFCK; s 98.5 3.6E-07 1.2E-11 93.4 9.8 107 627-733 58-211 (257)
418 2cdu_A NADPH oxidase; flavoenz 98.5 5.1E-07 1.7E-11 101.7 11.7 55 215-269 191-245 (452)
419 2dkh_A 3-hydroxybenzoate hydro 98.5 8.5E-07 2.9E-11 104.2 13.7 62 216-277 142-218 (639)
420 1fl2_A Alkyl hydroperoxide red 98.4 5.6E-07 1.9E-11 95.8 11.1 51 220-270 61-114 (310)
421 3cp8_A TRNA uridine 5-carboxym 98.4 8.7E-07 3E-11 101.7 12.9 54 216-270 118-173 (641)
422 3ntd_A FAD-dependent pyridine 98.4 3.7E-07 1.3E-11 106.1 9.5 55 215-269 192-265 (565)
423 3h8l_A NADH oxidase; membrane 98.4 2.9E-06 1E-10 94.1 16.2 51 215-269 218-268 (409)
424 2hqm_A GR, grase, glutathione 98.4 3.9E-07 1.3E-11 103.4 9.0 55 215-269 226-283 (479)
425 1fec_A Trypanothione reductase 98.4 1.8E-07 6.1E-12 106.4 6.1 55 215-269 231-286 (490)
426 3ef6_A Toluene 1,2-dioxygenase 98.4 1.1E-06 3.9E-11 97.4 12.5 56 215-270 185-240 (410)
427 1jnr_A Adenylylsulfate reducta 98.4 4.2E-06 1.4E-10 98.2 17.5 56 216-271 152-218 (643)
428 1trb_A Thioredoxin reductase; 98.4 6.5E-07 2.2E-11 95.8 9.5 48 221-270 68-115 (320)
429 1y56_A Hypothetical protein PH 98.4 3.2E-07 1.1E-11 104.4 7.4 48 223-270 265-312 (493)
430 2wpf_A Trypanothione reductase 98.4 4.2E-07 1.4E-11 103.4 8.4 55 215-269 235-290 (495)
431 2a87_A TRXR, TR, thioredoxin r 98.4 7.3E-07 2.5E-11 96.1 9.1 48 221-270 77-125 (335)
432 1q1r_A Putidaredoxin reductase 98.3 1.7E-06 5.9E-11 96.6 11.9 55 215-269 191-248 (431)
433 3gcz_A Polyprotein; flavivirus 98.3 1.5E-07 5.2E-12 94.7 2.7 117 616-737 77-203 (282)
434 1dxl_A Dihydrolipoamide dehydr 98.3 1.8E-06 6E-11 97.8 11.9 38 1-38 7-44 (470)
435 3dgh_A TRXR-1, thioredoxin red 98.3 6E-07 2.1E-11 102.0 8.0 55 215-269 227-287 (483)
436 1onf_A GR, grase, glutathione 98.3 1.6E-06 5.4E-11 98.9 11.3 55 215-269 217-273 (500)
437 3r9u_A Thioredoxin reductase; 98.3 1.6E-06 5.5E-11 92.3 10.6 37 1-38 5-42 (315)
438 3fpz_A Thiazole biosynthetic e 98.3 2.9E-07 9.9E-12 98.9 4.6 40 1-40 66-107 (326)
439 1hyu_A AHPF, alkyl hydroperoxi 98.3 1.3E-06 4.6E-11 99.9 10.5 53 218-270 270-325 (521)
440 4fzv_A Putative methyltransfer 98.3 2.5E-06 8.7E-11 91.2 11.5 121 620-740 139-289 (359)
441 1wg8_A Predicted S-adenosylmet 98.3 1.1E-06 3.8E-11 89.0 7.4 82 618-705 11-98 (285)
442 3klj_A NAD(FAD)-dependent dehy 98.3 1.5E-06 5E-11 95.4 9.0 42 227-270 74-115 (385)
443 3gyx_A Adenylylsulfate reducta 98.2 3.6E-06 1.2E-10 98.3 12.1 55 216-270 167-232 (662)
444 2wk1_A NOVP; transferase, O-me 98.2 3.1E-06 1E-10 87.2 10.1 120 613-736 89-245 (282)
445 1ojt_A Surface protein; redox- 98.2 1.9E-06 6.7E-11 97.7 9.4 38 1-38 7-44 (482)
446 4b1b_A TRXR, thioredoxin reduc 98.2 1.4E-06 4.6E-11 99.5 7.9 55 214-268 262-316 (542)
447 3s1s_A Restriction endonucleas 98.2 6.8E-06 2.3E-10 94.6 12.2 108 628-736 320-466 (878)
448 1pn0_A Phenol 2-monooxygenase; 98.1 7.1E-06 2.4E-10 96.5 12.0 59 2-76 10-73 (665)
449 3kd9_A Coenzyme A disulfide re 98.1 8.2E-06 2.8E-10 91.7 11.8 53 215-269 190-242 (449)
450 2k4m_A TR8_protein, UPF0146 pr 98.1 4.3E-06 1.5E-10 75.1 7.2 87 628-737 34-123 (153)
451 1nhp_A NADH peroxidase; oxidor 98.1 4.3E-06 1.5E-10 93.9 9.1 36 1-36 1-38 (447)
452 3vrd_B FCCB subunit, flavocyto 98.1 2.4E-06 8E-11 94.6 6.2 49 221-269 208-256 (401)
453 2v3a_A Rubredoxin reductase; a 98.1 2.7E-05 9.4E-10 85.4 14.6 50 221-270 193-242 (384)
454 3lkz_A Non-structural protein 98.1 4.4E-06 1.5E-10 83.7 7.2 120 615-738 80-207 (321)
455 3cgb_A Pyridine nucleotide-dis 98.1 6.4E-06 2.2E-10 93.4 9.2 42 229-270 107-151 (480)
456 3c6k_A Spermine synthase; sper 98.1 4.3E-06 1.5E-10 88.8 7.0 109 628-736 204-332 (381)
457 4gcm_A TRXR, thioredoxin reduc 98.0 2.4E-06 8.4E-11 90.9 4.9 37 2-39 8-44 (312)
458 1c0p_A D-amino acid oxidase; a 98.0 3.9E-06 1.3E-10 91.5 5.7 36 1-36 7-42 (363)
459 3p8z_A Mtase, non-structural p 98.0 4.2E-05 1.4E-09 74.0 11.8 115 616-737 65-188 (267)
460 3sx6_A Sulfide-quinone reducta 98.0 5.8E-06 2E-10 92.5 6.9 33 1-33 5-40 (437)
461 4b63_A L-ornithine N5 monooxyg 98.0 1.3E-05 4.4E-10 91.1 9.8 36 2-37 41-76 (501)
462 2bc0_A NADH oxidase; flavoprot 98.0 6.4E-06 2.2E-10 93.6 6.9 36 1-36 36-74 (490)
463 4a5l_A Thioredoxin reductase; 98.0 3.7E-06 1.3E-10 89.5 4.5 33 2-34 6-38 (314)
464 2eq6_A Pyruvate dehydrogenase 97.9 5E-05 1.7E-09 85.6 13.6 49 221-269 216-269 (464)
465 2vdc_G Glutamate synthase [NAD 97.9 4.5E-06 1.5E-10 93.5 4.6 39 1-39 123-161 (456)
466 3eld_A Methyltransferase; flav 97.9 7.6E-06 2.6E-10 82.9 5.8 117 616-737 68-193 (300)
467 4auk_A Ribosomal RNA large sub 97.9 1.9E-05 6.5E-10 83.4 8.8 87 627-728 209-296 (375)
468 3ufb_A Type I restriction-modi 97.9 5.6E-05 1.9E-09 85.8 13.2 121 615-736 203-363 (530)
469 2px2_A Genome polyprotein [con 97.9 2.9E-05 9.9E-10 76.7 8.5 110 616-737 60-185 (269)
470 3c4a_A Probable tryptophan hyd 97.9 9.5E-06 3.2E-10 89.0 5.6 35 1-35 1-37 (381)
471 3l8k_A Dihydrolipoyl dehydroge 97.8 8.6E-06 2.9E-10 91.9 3.8 38 2-39 6-43 (466)
472 3k30_A Histamine dehydrogenase 97.8 1.1E-05 3.9E-10 95.5 4.7 40 1-40 392-431 (690)
473 1nhp_A NADH peroxidase; oxidor 97.7 0.00013 4.5E-09 81.7 12.5 35 1-35 150-184 (447)
474 1ebd_A E3BD, dihydrolipoamide 97.7 0.00013 4.4E-09 82.0 12.5 49 221-269 217-268 (455)
475 3ihm_A Styrene monooxygenase A 97.7 1.4E-05 4.9E-10 89.0 4.5 33 1-33 23-55 (430)
476 1v59_A Dihydrolipoamide dehydr 97.7 0.00013 4.4E-09 82.6 12.1 35 1-35 184-218 (478)
477 3g5s_A Methylenetetrahydrofola 97.7 2.5E-05 8.5E-10 83.1 5.6 39 1-39 2-40 (443)
478 1o94_A Tmadh, trimethylamine d 97.7 2E-05 6.7E-10 93.9 5.4 40 1-40 390-429 (729)
479 1v59_A Dihydrolipoamide dehydr 97.7 1.3E-05 4.6E-10 90.7 3.6 39 1-39 6-44 (478)
480 4eqs_A Coenzyme A disulfide re 97.7 0.00015 5E-09 80.9 12.0 34 2-35 2-37 (437)
481 1zmd_A Dihydrolipoyl dehydroge 97.7 1.4E-05 4.8E-10 90.5 3.6 39 1-39 7-45 (474)
482 2gqw_A Ferredoxin reductase; f 97.7 0.00031 1.1E-08 77.6 14.0 45 221-269 193-237 (408)
483 2zig_A TTHA0409, putative modi 97.7 0.00011 3.8E-09 77.2 9.9 59 616-676 223-281 (297)
484 1zmd_A Dihydrolipoyl dehydroge 97.7 0.00021 7.1E-09 80.8 12.9 49 221-269 226-280 (474)
485 3dk9_A Grase, GR, glutathione 97.7 2E-05 6.8E-10 89.3 4.3 55 215-269 228-291 (478)
486 3ic9_A Dihydrolipoamide dehydr 97.7 2.3E-05 7.8E-10 89.0 4.6 54 215-269 215-272 (492)
487 1zk7_A HGII, reductase, mercur 97.7 2.2E-05 7.5E-10 88.6 4.3 55 215-270 216-270 (467)
488 1ojt_A Surface protein; redox- 97.6 0.00017 5.9E-09 81.6 11.1 50 221-270 232-285 (482)
489 1ebd_A E3BD, dihydrolipoamide 97.6 2.7E-05 9.2E-10 87.6 4.3 37 1-38 4-40 (455)
490 3dgz_A Thioredoxin reductase 2 97.6 3.1E-05 1E-09 87.9 4.8 55 215-269 225-285 (488)
491 1lvl_A Dihydrolipoamide dehydr 97.6 2.3E-05 7.9E-10 88.2 3.5 38 1-39 6-43 (458)
492 3qfa_A Thioredoxin reductase 1 97.6 3.4E-05 1.2E-09 88.2 4.8 32 2-33 34-65 (519)
493 2a8x_A Dihydrolipoyl dehydroge 97.6 2.5E-05 8.6E-10 88.1 3.5 38 1-39 4-41 (464)
494 1ps9_A 2,4-dienoyl-COA reducta 97.6 4.5E-05 1.5E-09 90.2 5.6 39 1-39 374-412 (671)
495 2a8x_A Dihydrolipoyl dehydroge 97.5 0.0004 1.4E-08 78.2 12.7 48 222-269 219-269 (464)
496 1lvl_A Dihydrolipoamide dehydr 97.5 0.00018 6.2E-09 80.8 9.8 34 1-34 172-205 (458)
497 1gte_A Dihydropyrimidine dehyd 97.5 4.9E-05 1.7E-09 93.9 5.5 39 1-39 188-227 (1025)
498 3pl8_A Pyranose 2-oxidase; sub 97.5 5.5E-05 1.9E-09 88.1 5.3 36 2-37 48-83 (623)
499 2eq6_A Pyruvate dehydrogenase 97.5 3.5E-05 1.2E-09 86.8 3.6 36 1-37 7-42 (464)
500 3s5w_A L-ornithine 5-monooxyge 97.5 0.00091 3.1E-08 75.2 14.9 43 228-270 329-376 (463)
No 1
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=100.00 E-value=3.3e-45 Score=393.40 Aligned_cols=275 Identities=29% Similarity=0.477 Sum_probs=255.1
Q ss_pred chHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHH
Q 002928 569 TLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIV 648 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (864)
.++..+++|++|||++++||+.++++.|.|+|++|.....+++++|.++++.+++.+.++++.+|||||||+|.++..++
T Consensus 12 ~~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la 91 (302)
T 3hem_A 12 QLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAV 91 (302)
T ss_dssp CCCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHH
T ss_pred cccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhh-------ChhhHHHHHHHH
Q 002928 649 KQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAV-------GHDYMEEFFGCC 721 (864)
Q Consensus 649 ~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~-------~~~~~~~~l~~~ 721 (864)
+..+++|+|+|+|+++++.|++++...+++++++++++|+.++ +++||+|++..+++|+ +.+++..+++++
T Consensus 92 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~ 169 (302)
T 3hem_A 92 AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKF 169 (302)
T ss_dssp HHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHH
T ss_pred HhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHH
Confidence 9867999999999999999999999999988999999999988 5899999999999999 557789999999
Q ss_pred HhccccCcEEEEEEecCCCcccccccCc---------cchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHH
Q 002928 722 ESLLAEHGLLLLQFISVPDQCYDEHRLS---------PGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYY 792 (864)
Q Consensus 722 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~---------~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~ 792 (864)
.++|||||++++++++.+.......... .+|+.+++||++.+|+.+++.+.+++ +||+++++++++.||.
T Consensus 170 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~ 248 (302)
T 3hem_A 170 YNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSN-AGWKVERYHRIGANYV 248 (302)
T ss_dssp HHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHH-HTCEEEEEEECGGGHH
T ss_pred HHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHh-CCcEEEEEEeCchhHH
Confidence 9999999999999988765432221111 37899999999999999999998887 8999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEc
Q 002928 793 QTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSR 847 (864)
Q Consensus 793 ~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~ 847 (864)
+|+..|.++|+++++++.++ |+++|.|+|++||++|+++|+.|.++++||+++|
T Consensus 249 ~tl~~w~~~~~~~~~~~~~~-~~~~~~~~w~~yl~~~~~~f~~~~~~~~q~~~~~ 302 (302)
T 3hem_A 249 PTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK 302 (302)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHhHHHHHHH-hCHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence 99999999999999999988 8999999999999999999999999999999987
No 2
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=100.00 E-value=5e-42 Score=366.06 Aligned_cols=275 Identities=29% Similarity=0.500 Sum_probs=251.2
Q ss_pred chHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHH
Q 002928 569 TLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIV 648 (864)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (864)
+.+.++++|++|||.+++||+.++++.+.|+++||+....+++++|.++++.+++.+.++++.+|||||||+|.++..++
T Consensus 4 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~ 83 (287)
T 1kpg_A 4 ELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAV 83 (287)
T ss_dssp CSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHH
T ss_pred cccccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccC
Q 002928 649 KQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 649 ~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
+..+++|+|+|+|+++++.|++++...++.++++++++|+.+++ ++||+|++..+++|++++++..+++++.++||||
T Consensus 84 ~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 161 (287)
T 1kpg_A 84 EKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 161 (287)
T ss_dssp HHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC
Confidence 76688999999999999999999998888889999999998887 8899999999999998778999999999999999
Q ss_pred cEEEEEEecCCCcccc---------cccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHH
Q 002928 729 GLLLLQFISVPDQCYD---------EHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWR 799 (864)
Q Consensus 729 G~l~i~~~~~~~~~~~---------~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (864)
|+++++++........ .......|+.+++||++.+|+.+++.+.+++ +||++++++.++.||.+++..|.
T Consensus 162 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~~~~~~w~ 240 (287)
T 1kpg_A 162 GVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASA-NGFTVTRVQSLQPHYAKTLDLWS 240 (287)
T ss_dssp CEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHh-CCcEEEEEEeCcHhHHHHHHHHH
Confidence 9999999876553220 0112345778899999999999999988886 99999999999999999999999
Q ss_pred HHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEc
Q 002928 800 KNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSR 847 (864)
Q Consensus 800 ~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~ 847 (864)
+++.++++++.+. +++.+.++|.+||.+|+++|+.|.++++||+++|
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k 287 (287)
T 1kpg_A 241 AALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK 287 (287)
T ss_dssp HHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence 9999999999987 4677778899999999999999999999999987
No 3
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=100.00 E-value=1e-40 Score=361.24 Aligned_cols=281 Identities=27% Similarity=0.453 Sum_probs=249.1
Q ss_pred ccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHH
Q 002928 566 RKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAI 645 (864)
Q Consensus 566 ~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~ 645 (864)
++|+.+.++++|++|||.+++||+.++++.+.|++++|+....+++++|.++++.+++.+.++++.+|||||||+|.++.
T Consensus 27 ~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~ 106 (318)
T 2fk8_A 27 SPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMR 106 (318)
T ss_dssp -----------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHH
T ss_pred ccCChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhcc
Q 002928 646 EIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLL 725 (864)
Q Consensus 646 ~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~L 725 (864)
.+++..+++|+|+|+|+++++.|++++...++.++++++++|+.+++ ++||+|++..+++|++.+++..+++++.++|
T Consensus 107 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L 184 (318)
T 2fk8_A 107 RAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIM 184 (318)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHS
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhc
Confidence 99987688999999999999999999998888878999999999886 7899999999999999888999999999999
Q ss_pred ccCcEEEEEEecCCCcccccc---------cCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHH
Q 002928 726 AEHGLLLLQFISVPDQCYDEH---------RLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLR 796 (864)
Q Consensus 726 kpgG~l~i~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~ 796 (864)
||||++++.++.......... .....|+.++++|++.+|+.+++.+.+++ +||++++++.++.+|.+++.
T Consensus 185 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~~~~~ 263 (318)
T 2fk8_A 185 PADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEK-AGFTVPEPLSLRPHYIKTLR 263 (318)
T ss_dssp CTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHH-TTCBCCCCEECHHHHHHHHH
T ss_pred CCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHh-CCCEEEEEEecchhHHHHHH
Confidence 999999999988665321100 11236788899999999999999998887 99999999999999999999
Q ss_pred HHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcCCC
Q 002928 797 CWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRPSN 850 (864)
Q Consensus 797 ~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~~~ 850 (864)
.|.+++.++++++... +++.|.|+|..|+.+|+++|+.|.++++|++++||..
T Consensus 264 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k~~~ 316 (318)
T 2fk8_A 264 IWGDTLQSNKDKAIEV-TSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGA 316 (318)
T ss_dssp HHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSCEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeCCC
Confidence 9999999999999887 6899999999999999999999999999999999864
No 4
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=100.00 E-value=5.8e-32 Score=286.02 Aligned_cols=265 Identities=16% Similarity=0.219 Sum_probs=208.4
Q ss_pred HHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHH
Q 002928 572 QARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEH--EDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVK 649 (864)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~--~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (864)
.+.++|++|||..+++|..++++.+ +++||.... .++.+++.++.+.+++.+.++++.+|||||||+|.++..+++
T Consensus 4 p~~~~~~~~Yd~~~~~y~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 81 (273)
T 3bus_A 4 PTPEEVRQMYDDFTDPFARIWGENL--HFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT 81 (273)
T ss_dssp -------------------CCGGGC--CCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH
T ss_pred CcHHHHHHHHcchHHHHHHHcCCCc--eEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH
Confidence 4577899999999999999999865 569998766 699999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccC
Q 002928 650 QTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
..+++|+|+|+|+++++.|++++...++.++++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++||||
T Consensus 82 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 82 ARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM--PDRGRALREMARVLRPG 159 (273)
T ss_dssp HSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTS--SCHHHHHHHHHTTEEEE
T ss_pred hcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhC--CCHHHHHHHHHHHcCCC
Confidence 7789999999999999999999999998889999999999988 67899999999999999 45799999999999999
Q ss_pred cEEEEEEecCCCcccccccCccchhhh--cccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHHHHhH
Q 002928 729 GLLLLQFISVPDQCYDEHRLSPGFIKE--YIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQ 806 (864)
Q Consensus 729 G~l~i~~~~~~~~~~~~~~~~~~~~~~--~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 806 (864)
|++++.++.......... ...+.. ..++...+++..++.+.+++ +||++++++.++.+|..++..|.+++.+++
T Consensus 160 G~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (273)
T 3bus_A 160 GTVAIADFVLLAPVEGAK---KEAVDAFRAGGGVLSLGGIDEYESDVRQ-AELVVTSTVDISAQARPSLVKTAEAFENAR 235 (273)
T ss_dssp EEEEEEEEEESSCCCHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHHH-TTCEEEEEEECHHHHTTHHHHHHHHHHHTH
T ss_pred eEEEEEEeeccCCCChhH---HHHHHHHHhhcCccCCCCHHHHHHHHHH-cCCeEEEEEECcHhHHHHHHHHHHHHHHhH
Confidence 999999877543221111 111111 23567788999999988887 899999999999999999999999999988
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcC
Q 002928 807 SKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRP 848 (864)
Q Consensus 807 ~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~ 848 (864)
+++... +++.+.++|...+ +..|..+.+++++++++||
T Consensus 236 ~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~kp 273 (273)
T 3bus_A 236 SQVEPF-MGAEGLDRMIATF---RGLAEVPEAGYVLIGARKP 273 (273)
T ss_dssp HHHHHH-HCHHHHHHHHHHH---HHHHTCTTEEEEEEEEECC
T ss_pred HHHHhh-cCHHHHHHHHHHH---HHHhhCCCeeEEEEEEECC
Confidence 887665 5666666554433 3348889999999999997
No 5
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.97 E-value=2.4e-31 Score=304.64 Aligned_cols=399 Identities=18% Similarity=0.264 Sum_probs=262.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC------CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG------VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVD 74 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G------~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~ 74 (864)
+||+|||||++||+||++|+++| ++|+|||+++++||++.|.+.+|+.+|.|++++.. .++.+.++++++|++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~ 84 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE-RKKSAPQLVKDLGLE 84 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEET-TCTHHHHHHHHTTCC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhh-CCHHHHHHHHHcCCc
Confidence 38999999999999999999999 99999999999999999999999999999998854 477889999999998
Q ss_pred ccccc--ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHH
Q 002928 75 MEISD--MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFV 152 (864)
Q Consensus 75 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (864)
..... ........+++...++.... .........+....... ...........+ .......++.++.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~s~~~~~ 156 (470)
T 3i6d_A 85 HLLVNNATGQSYVLVNRTLHPMPKGAV-MGIPTKIAPFVSTGLFS----LSGKARAAMDFI---LPASKTKDDQSLGEFF 156 (470)
T ss_dssp TTEEECCCCCEEEECSSCEEECCC--------------------------CCSHHHHHHHH---SCCCSSSSCCBHHHHH
T ss_pred ceeecCCCCccEEEECCEEEECCCCcc-cCCcCchHHhhccCcCC----HHHHHHHhcCcc---cCCCCCCCCcCHHHHH
Confidence 65531 11222334444444332110 00000000000000000 000001111111 1222233678999999
Q ss_pred HhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhh----cCCC-c---------------cCCCCcEEEecC
Q 002928 153 ETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRN----HHAL-Q---------------IFGRPQWLTVRS 212 (864)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~-~---------------~~~~~~~~~~~g 212 (864)
.+. +.....+.++.|++.+.|+.++++++ +......+.. .+.. . ......+.+++|
T Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (470)
T 3i6d_A 157 RRR-VGDEVVENLIEPLLSGIYAGDIDKLS---LMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLST 232 (470)
T ss_dssp HHH-SCHHHHHHTHHHHHHHTTCSCTTTBB---HHHHCGGGCC-------------------------------EEEETT
T ss_pred HHh-cCHHHHHHhccchhcEEecCCHHHhh---HHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCC
Confidence 987 77888889999999999999988873 2222111110 0000 0 001236778999
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCc
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQ 292 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~ 292 (864)
|+..+++.|++.+.+ ++|++|++|++|+.++++|+|++.+|++++||+||+|+|++.+.+++.+. ...+.+..++
T Consensus 233 g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~---~~~~~~~~~~ 307 (470)
T 3i6d_A 233 GLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSEL---PAISHLKNMH 307 (470)
T ss_dssp CTHHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTS---TTHHHHHTCE
T ss_pred hHHHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCc---hhhHHHhcCC
Confidence 999999999998854 79999999999999988999999999889999999999999998888752 2356777888
Q ss_pred eee-ceEEEecCCCCCCCCcC-----------------Ccccceecc-CCCCceEEEEecccccc--C--------ccCC
Q 002928 293 YVY-SDIFLHRDKNFMPRNPA-----------------AWSAWNFLG-STGGKVCLTYWLNVVQN--I--------EETR 343 (864)
Q Consensus 293 ~~~-~~~~l~~d~~~~p~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~--l--------~~~~ 343 (864)
+.+ .++.+.++.++++.... .|.+..+.. .|++..++..++..... + .+.+
T Consensus 308 ~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (470)
T 3i6d_A 308 STSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIV 387 (470)
T ss_dssp EEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHH
T ss_pred CCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHH
Confidence 877 56778888877643211 122211221 45556555554432211 1 1111
Q ss_pred CCeEEEcCCCCC-Cc-ceeeeEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEEec-cCCCCCChhhHhHHHHHHHHhcc
Q 002928 344 LPFLVTLNPDHT-PE-HTLFKWSTSHPVPSVAASKASLELDH--IQGKRGIWFCGA-YQGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 344 ~~~~~~l~p~~~-~~-~~~~~w~~~~p~~~~~~~~~~~~l~~--~~~~~~l~~aG~-~~g~G~~e~a~~sG~~aA~~ilg 418 (864)
.+.+.++++... +. ..+++|..++|.+.+++......+.. .++.+||++||+ |.|.|+ ++|+.||+++|+.|+.
T Consensus 388 ~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv-~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 388 LEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGI-PDCIDQGKAAVSDALT 466 (470)
T ss_dssp HHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCH-HHHHHHHHHHHHHHHH
Confidence 222333443321 22 26789999999999988776555543 234679999999 578887 9999999999999975
No 6
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=302.14 Aligned_cols=397 Identities=20% Similarity=0.262 Sum_probs=266.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCC--eEEEEecCCCCCCcceeEee-CCeeeccceeeccCC--CchHHHHHHHHcCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGV--EVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRV--TYPNMMEFFESLGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~--~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~--~~~~~~~l~~~lG~~~ 75 (864)
+||+|||||++||+||++|+++|+ +|+|||+++++||++.|... +|+.+|.|++.+... .+..+.++++++|++.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 82 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDS 82 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcc
Confidence 589999999999999999999999 99999999999999999876 599999999988432 2556779999999985
Q ss_pred ccccce-------eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccH
Q 002928 76 EISDMS-------FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETL 148 (864)
Q Consensus 76 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (864)
...... ......+++...++. .+...+.....+..+.....+ ..........++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~s~ 146 (477)
T 3nks_A 83 EVLPVRGDHPAAQNRFLYVGGALHALPT--GLRGLLRPSPPFSKPLFWAGL--------------RELTKPRGKEPDETV 146 (477)
T ss_dssp GEEEECTTSHHHHCEEEEETTEEEECCC--SSCC---CCTTSCSCSSHHHH--------------TTTTSCCCCSSCCBH
T ss_pred eeeecCCCCchhcceEEEECCEEEECCC--ChhhcccccchhhhHHHHHHH--------------HhhhcCCCCCCCcCH
Confidence 543211 112224455444432 121121111111111111111 111111222367899
Q ss_pred HHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHh----hcCCC------c---------------cCC
Q 002928 149 GQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCR----NHHAL------Q---------------IFG 203 (864)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~------~---------------~~~ 203 (864)
.+|+.+. ++..+.+.++.|++.+.|+.++++++ +...+..+. ..+.+ . ...
T Consensus 147 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls---~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (477)
T 3nks_A 147 HSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELS---IRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAE 222 (477)
T ss_dssp HHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBB---HHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHT
T ss_pred HHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhh---HHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhccc
Confidence 9999986 77788899999999999999998883 322221111 11000 0 011
Q ss_pred CCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHHHhhcCCCCh
Q 002928 204 RPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATF 282 (864)
Q Consensus 204 ~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~ 282 (864)
...+++++||+..++++|++.+++.|++|++|++|++|+.++++ |.|++.++ +++||+||+|+|++.+.+++++ .++
T Consensus 223 ~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll~~-~~~ 300 (477)
T 3nks_A 223 RWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASVLSELLPA-EAA 300 (477)
T ss_dssp TCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHHHHHHSCG-GGH
T ss_pred CccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHHHHHhccc-cCH
Confidence 23577999999999999999999999999999999999988777 88877544 8999999999999999988875 345
Q ss_pred HHHHhhccCceee-ceEEEecCCCCCCCCcC---------------Ccccceecc--CCCCceEEEEecccc--------
Q 002928 283 EEKRVLGAFQYVY-SDIFLHRDKNFMPRNPA---------------AWSAWNFLG--STGGKVCLTYWLNVV-------- 336 (864)
Q Consensus 283 ~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~-------- 336 (864)
...+.+..+++.+ .++.+.++.+++|...- .|++..+.. .+++..+++.++...
T Consensus 301 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~ 380 (477)
T 3nks_A 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEAS 380 (477)
T ss_dssp HHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHS
T ss_pred HHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccc
Confidence 6677788888877 46778888777653211 112211111 122445555544321
Q ss_pred ------ccCccCCCCeEEE-cCCCCCCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-h-cCCCCeEEEec-cCCCCCChhh
Q 002928 337 ------QNIEETRLPFLVT-LNPDHTPEH-TLFKWSTSHPVPSVAASKASLELDH-I-QGKRGIWFCGA-YQGYGFHEDG 405 (864)
Q Consensus 337 ------~~l~~~~~~~~~~-l~p~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~-~~~~~l~~aG~-~~g~G~~e~a 405 (864)
+.+.+...+.+.+ +.....+.. .+++|..++|.+.+++......+.. + ...++|++||+ |.|.|+ ++|
T Consensus 381 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv-~~a 459 (477)
T 3nks_A 381 GCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAV-NDC 459 (477)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSH-HHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcH-HHH
Confidence 0011111112222 222222333 6779999999999999887777765 2 23468999999 589999 999
Q ss_pred HhHHHHHHHHhcccc
Q 002928 406 LKAGMIAAHGMLGKS 420 (864)
Q Consensus 406 ~~sG~~aA~~ilg~~ 420 (864)
+.||+++|+.|++..
T Consensus 460 ~~sg~~aA~~il~~~ 474 (477)
T 3nks_A 460 IESGRQAAVSVLGTE 474 (477)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998754
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.97 E-value=8.7e-30 Score=292.16 Aligned_cols=394 Identities=19% Similarity=0.235 Sum_probs=259.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+||+|||||++||+||+.|+++|++|+|||+++++||++.|.+.+|+.+|.|++++.. .++.+.++++++|+.......
T Consensus 17 ~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~-~~~~~~~~~~~~gl~~~~~~~ 95 (478)
T 2ivd_A 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD-REPATRALAAALNLEGRIRAA 95 (478)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET-TCHHHHHHHHHTTCGGGEECS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhh-hhHHHHHHHHHcCCcceeeec
Confidence 5899999999999999999999999999999999999999999999999999999864 477888999999986433211
Q ss_pred ----eeeEEecCCCceeecCCCCCCchhhhhh-hcCChHHHHHHHHHHhHHHHHHHHHHhh-ccCCcCCCCccHHHHHHh
Q 002928 81 ----SFSVSLDKGQGCEWSSRNGMSGLFAQKK-NLLNPYFWQMLREIIKFNDDVLSYLEDL-ENNADIDRNETLGQFVET 154 (864)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~ 154 (864)
.......+++.+.++. . ...... ..... . +.. ..+... .......++.++.+|+.+
T Consensus 96 ~~~~~~~~~~~~g~~~~~p~--~---~~~~~~~~~~~~--~----~~~-------~~~~~~~~~~~~~~~~~s~~~~l~~ 157 (478)
T 2ivd_A 96 DPAAKRRYVYTRGRLRSVPA--S---PPAFLASDILPL--G----ARL-------RVAGELFSRRAPEGVDESLAAFGRR 157 (478)
T ss_dssp CSSCCCEEEEETTEEEECCC--S---HHHHHTCSSSCH--H----HHH-------HHHGGGGCCCCCTTCCCBHHHHHHH
T ss_pred CccccceEEEECCEEEECCC--C---HHHhccCCCCCH--H----HHH-------HHhhhhhcCCCCCCCCCCHHHHHHH
Confidence 1122223444333321 0 000000 01110 0 000 111111 111112367899999998
Q ss_pred cCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHH-HHHhhcCC---------------Cc-cCCC----CcEEEecCC
Q 002928 155 RGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVL-SFCRNHHA---------------LQ-IFGR----PQWLTVRSR 213 (864)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---------------~~-~~~~----~~~~~~~gG 213 (864)
. +.+.+.+.++.|++...|+.++++++.......+ .+..+.+. .. .... ..+++++||
T Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 236 (478)
T 2ivd_A 158 H-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGG 236 (478)
T ss_dssp H-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTC
T ss_pred h-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCC
Confidence 6 7788888899999999999988877422111111 11010000 00 0011 578899999
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEE---CCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhcc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIR---GDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGA 290 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~---~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~ 290 (864)
+..++++|++.+ |++|+++++|++|+.++++|.|++ .+|++++||+||+|+|+..+.+++++ +++...+.+..
T Consensus 237 ~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~-l~~~~~~~l~~ 312 (478)
T 2ivd_A 237 LQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP-LDDALAALVAG 312 (478)
T ss_dssp THHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT-TCHHHHHHHHT
T ss_pred HHHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHHhhc-cCHHHHHHHhc
Confidence 999999999998 789999999999998888899988 77778999999999999998888874 66777788888
Q ss_pred Cceee-ceEEEecCCCCCCCC-cC---------------Ccccceecc-CCCCceEEEEecccccc--Ccc--------C
Q 002928 291 FQYVY-SDIFLHRDKNFMPRN-PA---------------AWSAWNFLG-STGGKVCLTYWLNVVQN--IEE--------T 342 (864)
Q Consensus 291 ~~~~~-~~~~l~~d~~~~p~~-~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~--l~~--------~ 342 (864)
+++.. .++.+.++.++++.. .. .|.+..+.. .|++..+++.++..... +.. .
T Consensus 313 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 392 (478)
T 2ivd_A 313 IAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAAL 392 (478)
T ss_dssp CCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHH
T ss_pred CCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHH
Confidence 88876 477788887766542 10 111111111 24455555544432211 100 0
Q ss_pred CCCeEEEcCCCC-CCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEEeccC-CCCCChhhHhHHHHHHHHhcc
Q 002928 343 RLPFLVTLNPDH-TPEH-TLFKWSTSHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ-GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 343 ~~~~~~~l~p~~-~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~-g~G~~e~a~~sG~~aA~~ilg 418 (864)
+.+.+.+++|.. .+.. .+++|...+|.+.++.......+.. ....+|||+||+|+ |.|+ ++|+.||+++|+.|++
T Consensus 393 ~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv-~gA~~SG~~aA~~i~~ 471 (478)
T 2ivd_A 393 AREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGL-NDCIRNAAQLADALVA 471 (478)
T ss_dssp HHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSH-HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCH-HHHHHHHHHHHHHHHH
Confidence 111222333322 1222 5678999999998887655544433 22258999999984 7888 9999999999999976
Q ss_pred c
Q 002928 419 K 419 (864)
Q Consensus 419 ~ 419 (864)
.
T Consensus 472 ~ 472 (478)
T 2ivd_A 472 G 472 (478)
T ss_dssp -
T ss_pred h
Confidence 4
No 8
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.97 E-value=2.4e-30 Score=292.19 Aligned_cols=391 Identities=18% Similarity=0.188 Sum_probs=248.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccC-CCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR-VTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~lG~~~~~~~ 79 (864)
|||+|||||++||+||++|+++|++|+|||+++++||++.+...+|+.+|.|++.+.+ .....+.++++++|++.....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR 80 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence 7999999999999999999999999999999999999999999999999999865533 234567799999998765432
Q ss_pred ceeeE-Eec-CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCC
Q 002928 80 MSFSV-SLD-KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGY 157 (864)
Q Consensus 80 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (864)
..... ... .+....+..... ...+......+.+. +..++.. .+..... ......++.+|+.+. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~--~~~~~~s~~~~l~~~-~ 146 (425)
T 3ka7_A 81 SEMTTVRVPLKKGNPDYVKGFK-DISFNDFPSLLSYK------DRMKIAL----LIVSTRK--NRPSGSSLQAWIKSQ-V 146 (425)
T ss_dssp CCCCEEEEESSTTCCSSTTCEE-EEEGGGGGGGSCHH------HHHHHHH----HHHHTTT--SCCCSSBHHHHHHHH-C
T ss_pred cCCceEEeecCCCccccccccc-ceehhhhhhhCCHH------HHHHHHH----HHHhhhh--cCCCCCCHHHHHHHh-c
Confidence 21111 100 000000000000 00011111112211 1111111 1111111 233678999999998 4
Q ss_pred CHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcc
Q 002928 158 SELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCE 237 (864)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~ 237 (864)
.......++.++....++.++++++.......+..+.. .....++.||+..++++|++.++++|++|++|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--------~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~ 218 (425)
T 3ka7_A 147 SDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYR--------FGGTGIPEGGCKGIIDALETVISANGGKIHTGQE 218 (425)
T ss_dssp CCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHH--------HCSCEEETTSHHHHHHHHHHHHHHTTCEEECSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHh--------cCCccccCCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence 55666777888888888888887743222222222111 1245689999999999999999999999999999
Q ss_pred eEEEEEeCCeEE-EEECCCcEEecCEEEEccChHHHHHhhcCCC----ChHHHHhhccCceee-ceEEEecCCCCCCCCc
Q 002928 238 VRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPDALRMLGNQA----TFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNP 311 (864)
Q Consensus 238 V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~----~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~ 311 (864)
|++|+.++++++ |++ +|++++||.||+|+++..+.++++... +....+.++.+.++. .++.+.++.+.++...
T Consensus 219 V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~ 297 (425)
T 3ka7_A 219 VSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGHTG 297 (425)
T ss_dssp EEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCSSS
T ss_pred eeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccCcCE
Confidence 999999998886 666 477899999999999999988887321 455566777777765 4566667765432211
Q ss_pred C------------Ccccceec-cCCCCceEEEEecccc-ccC------ccCCCCeEEEcCCCCCCcc-eeeeEEcCCCCC
Q 002928 312 A------------AWSAWNFL-GSTGGKVCLTYWLNVV-QNI------EETRLPFLVTLNPDHTPEH-TLFKWSTSHPVP 370 (864)
Q Consensus 312 ~------------~~~~~~~~-~~~~~~~~~~~~~~~~-~~l------~~~~~~~~~~l~p~~~~~~-~~~~w~~~~p~~ 370 (864)
. .+.+.... ..|.++.++....... ... .+...+.+.+++|...+.. .+.+|..++|.+
T Consensus 298 ~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~~ 377 (425)
T 3ka7_A 298 VLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPGKRYEVLLIQSYHDEWPVN 377 (425)
T ss_dssp EEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTTCCEEEEEEEEEBTTBCSB
T ss_pred EEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCCCceEEEEEEEECCCcccc
Confidence 1 11111111 2456666553322211 111 1112223445665532222 566899999998
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEEeccC----CCCCChhhHhHHHHHHHHhcc
Q 002928 371 SVAASKASLELDHIQGKRGIWFCGAYQ----GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~l~~aG~~~----g~G~~e~a~~sG~~aA~~ilg 418 (864)
.++.. ..+....+.+|||+||+|+ |.|+ ++|+.||+++|++|+|
T Consensus 378 ~~~~~---~~~~~~~p~~gL~laG~~~~~~gg~gv-~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 378 RAASG---TDPGNETPFSGLYVVGDGAKGKGGIEV-EGVALGVMSVMEKVLG 425 (425)
T ss_dssp SSCTT---CCCCSBCSSBTEEECSTTSCCTTCCHH-HHHHHHHHHHHHC---
T ss_pred ccccC---CCCCCCCCcCCeEEeCCccCCCCCCcc-HHHHHHHHHHHHHhhC
Confidence 87632 2233345567999999974 5778 9999999999999986
No 9
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.97 E-value=3.5e-29 Score=268.01 Aligned_cols=269 Identities=18% Similarity=0.214 Sum_probs=222.3
Q ss_pred CchHHHHHhhhhhhcCC--hHHHHhhc-CCCCcccccccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCeEEEEcC
Q 002928 568 NTLTQARRNISRHYDLS--NELFSLFL-DKSMLYSCAIFKSE--HEDLEVAQMRKVSLLIQKA----RVSKGHEVLEIGC 638 (864)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~--~~~~~~~~-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~~~~~l----~~~~~~~vLDiGc 638 (864)
++...+.+++..|||.. ++||+..+ ++.++ ++||... ...+.+++.+.++.+++.+ .++++.+||||||
T Consensus 14 ~~~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGc 91 (297)
T 2o57_A 14 ATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIH--VGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGA 91 (297)
T ss_dssp --CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCC--SCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETC
T ss_pred hhHHHHHHHHHHHcCCccchhHHHHHhCCCceE--EEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCC
Confidence 35567788999999997 49997655 56654 5899887 8899999999999999999 8899999999999
Q ss_pred CchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHH
Q 002928 639 GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEF 717 (864)
Q Consensus 639 G~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~ 717 (864)
|+|.++..+++..+++|+|+|+|+.+++.|+++....++.++++++++|+.+++ ++++||+|++..+++|++ ++..+
T Consensus 92 G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~ 169 (297)
T 2o57_A 92 GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP--DKLKV 169 (297)
T ss_dssp TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCS--CHHHH
T ss_pred CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcC--CHHHH
Confidence 999999999997678999999999999999999999998889999999999998 678999999999999995 58999
Q ss_pred HHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc----ccHHH
Q 002928 718 FGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG----IHYYQ 793 (864)
Q Consensus 718 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~----~~y~~ 793 (864)
++++.++|||||++++.++......... ....+...+.+| .+++..++.+.+.+ +||++++++++. .+|..
T Consensus 170 l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~l~~-aGf~~~~~~~~~~~~~~~~~~ 244 (297)
T 2o57_A 170 FQECARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRIKLH--DMGSLGLYRSLAKE-CGLVTLRTFSRPDSLVHHYSK 244 (297)
T ss_dssp HHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHHTCS--SCCCHHHHHHHHHH-TTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEeccCCCCchH--HHHHHHHHhcCC--CCCCHHHHHHHHHH-CCCeEEEEEECchhhHHHHHH
Confidence 9999999999999999987755432211 122333343333 46688888888886 899999998865 45656
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcCCC
Q 002928 794 TLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRPSN 850 (864)
Q Consensus 794 tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~~~ 850 (864)
++..|.++ .+++.. .+++.+.+.|..++..|..+++.|.+++.+++++||..
T Consensus 245 ~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~Kp~~ 296 (297)
T 2o57_A 245 VKAELIKR----SSEIAS-FCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKSDK 296 (297)
T ss_dssp HHHHHHHT----HHHHTT-TSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEESSC
T ss_pred HHHHHHHh----HHHHhc-cCCHHHHHHHHHHHHHHHHhccCCeEEEEEEEEECCCC
Confidence 66555543 344444 47899999999999999999999999999999999853
No 10
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.97 E-value=1.2e-29 Score=290.80 Aligned_cols=398 Identities=15% Similarity=0.239 Sum_probs=262.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC--CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG--VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G--~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
+||+|||||++||+||++|+++| ++|+|||+++++||++.|.+.+|+.+|.|++.+.. .++.+.++++++|++....
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~l~~~lg~~~~~~ 83 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVA-RKHILTDLIEAIGLGEKLV 83 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEET-TSTHHHHHHHHTTCGGGEE
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhc-ccHHHHHHHHHcCCcceEe
Confidence 48999999999999999999999 99999999999999999999999999999998854 5778889999999986553
Q ss_pred cc--eeeEEecCCCceeecCCC--CCCchhhhh--hhcCChHHHHHHHHHHhHHHHHHHHHHhhcc-CCcCCCCccHHHH
Q 002928 79 DM--SFSVSLDKGQGCEWSSRN--GMSGLFAQK--KNLLNPYFWQMLREIIKFNDDVLSYLEDLEN-NADIDRNETLGQF 151 (864)
Q Consensus 79 ~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ 151 (864)
.. .......+++...++... .++...... ...+... .. + ........... .....++.++.+|
T Consensus 84 ~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-----~~---~--~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (475)
T 3lov_A 84 RNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEE-----EK---Q--EVADLLLHPSDSLRIPEQDIPLGEY 153 (475)
T ss_dssp ECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHH-----HH---H--HHHHHHHSCCTTCCCCSSCCBHHHH
T ss_pred ecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChh-----HH---H--HhhCcccCCcccccCCCCCcCHHHH
Confidence 21 112222344444333211 000000000 0111110 00 0 11111111111 1112367899999
Q ss_pred HHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHH-HHHhhcCCCc-------------------cCCCCcEEEec
Q 002928 152 VETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVL-SFCRNHHALQ-------------------IFGRPQWLTVR 211 (864)
Q Consensus 152 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~ 211 (864)
+.+. +...+.+.++.|++.+.|+.++++++.......+ .+....+.+. ......+++++
T Consensus 154 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (475)
T 3lov_A 154 LRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLE 232 (475)
T ss_dssp HHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEET
T ss_pred HHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeC
Confidence 9986 7788889999999999999999998654333222 1111111000 01245688999
Q ss_pred CChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccC
Q 002928 212 SRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAF 291 (864)
Q Consensus 212 gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~ 291 (864)
||+..++++|++.+.+ ++|++|++|++|+.++++|.|+|.+| +++||+||+|+|++.+.++++... . +.+..+
T Consensus 233 ~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~~~-~---~~~~~~ 305 (475)
T 3lov_A 233 TGLESLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPDAH-L---PELEQL 305 (475)
T ss_dssp TCHHHHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCTTSC-C---HHHHTC
T ss_pred ChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcCccC-H---HHHhcC
Confidence 9999999999999864 79999999999999999999999999 899999999999999998887532 2 666778
Q ss_pred ceee-ceEEEecCCCCCCCCcC-----------------Ccccceecc-CCCCceEEEEeccccc--cC--------ccC
Q 002928 292 QYVY-SDIFLHRDKNFMPRNPA-----------------AWSAWNFLG-STGGKVCLTYWLNVVQ--NI--------EET 342 (864)
Q Consensus 292 ~~~~-~~~~l~~d~~~~p~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~--~l--------~~~ 342 (864)
++.+ .++.+.++.++ +.... .|.+..+.. .|+ ..++..++.... .+ .+.
T Consensus 306 ~~~~~~~v~l~~~~~~-~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~ 383 (475)
T 3lov_A 306 TTHSTATVTMIFDQQQ-SLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQA 383 (475)
T ss_dssp CEEEEEEEEEEEECCS-SCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHH
T ss_pred CCCeEEEEEEEECCcC-CCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHH
Confidence 8877 56777777655 21100 111111111 233 444444443221 11 111
Q ss_pred CCCeEEEcCCCC-CCc-ceeeeEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEEec-cCCCCCChhhHhHHHHHHHHhc
Q 002928 343 RLPFLVTLNPDH-TPE-HTLFKWSTSHPVPSVAASKASLELDH--IQGKRGIWFCGA-YQGYGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 343 ~~~~~~~l~p~~-~~~-~~~~~w~~~~p~~~~~~~~~~~~l~~--~~~~~~l~~aG~-~~g~G~~e~a~~sG~~aA~~il 417 (864)
+...+.++++.. .+. ..+++|..++|.+.+++......+.. .++.+||++||+ +.|.|+ ++|+.||+++|+.|+
T Consensus 384 ~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~-~~a~~sG~~aA~~i~ 462 (475)
T 3lov_A 384 VLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGL-PDCVASAKTMIESIE 462 (475)
T ss_dssp HHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCH-HHHHHHHHHHHHHHH
Confidence 111222332221 222 36779999999999998776655554 235679999998 567788 999999999999998
Q ss_pred ccc
Q 002928 418 GKS 420 (864)
Q Consensus 418 g~~ 420 (864)
+..
T Consensus 463 ~~l 465 (475)
T 3lov_A 463 LEQ 465 (475)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 11
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.96 E-value=4.1e-29 Score=281.85 Aligned_cols=389 Identities=14% Similarity=0.175 Sum_probs=242.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
+||+|||||++||+||++|+++| ++|+|+|+++++||++.|.+.+|+.+|.|++++. ..++.+.++++++|++.....
T Consensus 7 ~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~-~~~~~~~~l~~~~g~~~~~~~ 85 (424)
T 2b9w_A 7 SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGV-PSYDTIQEIMDRTGDKVDGPK 85 (424)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBC-TTCHHHHHHHHHHCCCCCSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeec-CCcHHHHHHHHHhCCcccccc
Confidence 58999999999999999999999 9999999999999999999999999999999884 356788899999998765544
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhcc-----CCcCCCCccHHHHHHh
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLEN-----NADIDRNETLGQFVET 154 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~l~~ 154 (864)
....+...+|..+.. ... .. ..........++............. ........++.+|+++
T Consensus 86 ~~~~~~~~~g~~~~~-~~~----~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 151 (424)
T 2b9w_A 86 LRREFLHEDGEIYVP-EKD----PV---------RGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLAL 151 (424)
T ss_dssp CCEEEECTTSCEECG-GGC----TT---------HHHHHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHH
T ss_pred ccceeEcCCCCEecc-ccC----cc---------cchhHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHh
Confidence 433333344433211 000 00 0000111111111100000000000 0011235789999999
Q ss_pred cCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEe
Q 002928 155 RGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKT 234 (864)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~ 234 (864)
.+.+. +.+.++.|++...|+ ++. ..++...+.++....+........+ .+.+|+..++++|++.+ +.+|++
T Consensus 152 ~~~~~-~~~~~~~~~~~~~~~-~~~---~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~l---~~~v~~ 222 (424)
T 2b9w_A 152 NGCEA-ARDLWINPFTAFGYG-HFD---NVPAAYVLKYLDFVTMMSFAKGDLW-TWADGTQAMFEHLNATL---EHPAER 222 (424)
T ss_dssp TTCGG-GHHHHTTTTCCCCCC-CTT---TSBHHHHHHHSCHHHHHHHHHTCCB-CCTTCHHHHHHHHHHHS---SSCCBC
T ss_pred hCcHH-HHHHHHHHHHhhccC-ChH---hcCHHHHHHhhhHhhhhcccCCceE-EeCChHHHHHHHHHHhh---cceEEc
Confidence 87764 566677888777775 333 3466665555443222111122333 67899999999999988 568999
Q ss_pred CcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeeceEEEecCCC------CCC
Q 002928 235 GCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYSDIFLHRDKN------FMP 308 (864)
Q Consensus 235 ~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~l~~d~~------~~p 308 (864)
|++|++|+.+++++.|++.+| +++||+||+|+|+..+.++++. ++..++.+..+.+......+..... +.|
T Consensus 223 ~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
T 2b9w_A 223 NVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDYSDA--DDDEREYFSKIIHQQYMVDACLVKEYPTISGYVP 299 (424)
T ss_dssp SCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTSBCC--CHHHHHHHTTCEEEEEEEEEEEESSCCSSEEECG
T ss_pred CCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhccCC--CHHHHHHHhcCCcceeEEEEEEeccCCccccccc
Confidence 999999999888899999888 5999999999999988776653 3555566677766553222222111 112
Q ss_pred CC----cCCcccceeccCCC--CceEEEEeccccccCccCCC--------CeEEEcCCCCCCcceeeeEEcCCCCCCHHH
Q 002928 309 RN----PAAWSAWNFLGSTG--GKVCLTYWLNVVQNIEETRL--------PFLVTLNPDHTPEHTLFKWSTSHPVPSVAA 374 (864)
Q Consensus 309 ~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~--------~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~ 374 (864)
.+ ...+..+++...++ ...+..|+.+....+.+.-. +.+.++++..........|.. +|.+.+..
T Consensus 300 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~w~~-~p~~~~~~ 378 (424)
T 2b9w_A 300 DNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYY-FPHVSSED 378 (424)
T ss_dssp GGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCCEEEEEEEEEEEE-EEECCHHH
T ss_pred CCCCCcCCCcceEEeeecCCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCcccccccccceee-eeccCHHH
Confidence 21 11122222222222 23455666543333221101 112334443111112235664 67666543
Q ss_pred HHH--HHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhc
Q 002928 375 SKA--SLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 375 ~~~--~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~il 417 (864)
... ..++...++.+|+||||+|+++|++|+|+.||.++|+.|+
T Consensus 379 ~~~G~~~~~~~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 379 YKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp HHTTHHHHHHHTTTGGGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHhCCCCceEeccccccccHHHHHHHHHHHHHHhc
Confidence 332 4455556667899999999999999999999999999885
No 12
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.96 E-value=4.2e-29 Score=289.26 Aligned_cols=395 Identities=13% Similarity=0.121 Sum_probs=246.0
Q ss_pred cEEEEcCChhHHHHHHHHHh-CCCeEEEEecCCCCCCcceeEe-eCCeeeccceeeccCCCchHHHHHHHHcCCCcccc-
Q 002928 2 RAAVIGGGISGLVSAYVLAK-AGVEVVLYEKEDSLGGHAKTVT-IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS- 78 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~-~G~~V~vlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~- 78 (864)
||+|||||+|||+||++|++ .|++|+||||++++||+++|.. .+|+.+|.|+|+|+ ..++.+.+++++++......
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~-~~~~~v~~l~~e~~~~~~~~~ 90 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF-SHYKYFDDCLDEALPKEDDWY 90 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCC-CCBHHHHHHHHHHSCSGGGEE
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEec-CCCHHHHHHHHHhCCccceeE
Confidence 89999999999999999998 5999999999999999999965 48999999999995 46888999999987654321
Q ss_pred cce-eeEEecCCCceeecCCCCCCchhhhhhhcCChH-HHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcC
Q 002928 79 DMS-FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPY-FWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRG 156 (864)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (864)
... ......+|+.+.++....+ ...... ......... ........ ......++.+|+.+.
T Consensus 91 ~~~~~~~i~~~g~~~~~p~~~~~--------~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~s~~~~~~~~- 152 (513)
T 4gde_A 91 THQRISYVRCQGQWVPYPFQNNI--------SMLPKEEQVKCIDGMI-------DAALEARV--ANTKPKTFDEWIVRM- 152 (513)
T ss_dssp EEECCEEEEETTEEEESSGGGGG--------GGSCHHHHHHHHHHHH-------HHHHHHHT--CCSCCCSHHHHHHHH-
T ss_pred EecCceEEEECCeEeecchhhhh--------hhcchhhHHHHHHHHH-------HHHHhhhc--ccccccCHHHHHHHh-
Confidence 111 1222344554443321111 111111 111111111 11111111 112567899999887
Q ss_pred CCHHHHHHHHhhhhhcccCCChhhhhcCC---------HHHHHHH-Hhh-cCCCccCCCCcEEEecCChHHHHHHHHHHH
Q 002928 157 YSELFQKAYLVPVCGSIWSCSSEKVMSCS---------AFSVLSF-CRN-HHALQIFGRPQWLTVRSRSRSYVDKVIELL 225 (864)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~~-~~~-~~~~~~~~~~~~~~~~gG~~~l~~~La~~~ 225 (864)
+++.+.+.++.|++.++|+.++++++... ....... +.. ...........++.++||+..++++|++.+
T Consensus 153 ~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l 232 (513)
T 4gde_A 153 MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTL 232 (513)
T ss_dssp HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTS
T ss_pred hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHH
Confidence 77788899999999999999998874321 1111111 111 111111122344556899999999999999
Q ss_pred hhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeec-eEEEecCC
Q 002928 226 ESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYS-DIFLHRDK 304 (864)
Q Consensus 226 ~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~-~~~l~~d~ 304 (864)
.+.|++|++|++|++|..++++ |++.+|+++.||+||+|+|...+.+++++ .........++|... ++.+..+.
T Consensus 233 ~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~l~~---~~~~~~~~~l~y~~~~~v~l~~~~ 307 (513)
T 4gde_A 233 PKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEAMND---QELVGLTKQLFYSSTHVIGVGVRG 307 (513)
T ss_dssp CGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHHTTC---HHHHHHHTTCCEEEEEEEEEEEES
T ss_pred HhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHhcCc---hhhHhhhhcccCCceEEEEEEEec
Confidence 9999999999999999877665 55789999999999999999999888874 455666778888774 44454432
Q ss_pred CCC-----------CCCcCC------cccceeccCCCCceEE--EEecccc---------------------ccCc----
Q 002928 305 NFM-----------PRNPAA------WSAWNFLGSTGGKVCL--TYWLNVV---------------------QNIE---- 340 (864)
Q Consensus 305 ~~~-----------p~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~---------------------~~l~---- 340 (864)
... |..... +.++.....|++...+ ..+.... ..+.
T Consensus 308 ~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 387 (513)
T 4gde_A 308 SRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQ 387 (513)
T ss_dssp SCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCT
T ss_pred cccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCH
Confidence 211 111100 1111111112221111 0111000 0000
Q ss_pred ----cCCCCeEEEcCCCCCCc----ceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCC----ChhhHhH
Q 002928 341 ----ETRLPFLVTLNPDHTPE----HTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGF----HEDGLKA 408 (864)
Q Consensus 341 ----~~~~~~~~~l~p~~~~~----~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~----~e~a~~s 408 (864)
+...+.+.++.+..... ..+.+|.+++|+|..++.+....+......+|||++|.+..+-+ ++.|+++
T Consensus 388 e~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~~~ 467 (513)
T 4gde_A 388 ETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFML 467 (513)
T ss_dssp TTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHHHH
Confidence 00001112222221211 14568999999999999888777766212369999998654433 2789999
Q ss_pred HHHHHHHhcccc
Q 002928 409 GMIAAHGMLGKS 420 (864)
Q Consensus 409 G~~aA~~ilg~~ 420 (864)
|+.||+.|+...
T Consensus 468 g~~aa~~I~~g~ 479 (513)
T 4gde_A 468 GVEAVDNIVNGA 479 (513)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 999999998543
No 13
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.96 E-value=2.1e-28 Score=275.74 Aligned_cols=382 Identities=14% Similarity=0.103 Sum_probs=238.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccC-CCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR-VTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~lG~~~~~~~ 79 (864)
|||+|||||++||+||++|+++|++|+||||++++||++.+...+|+.+|.|++.+.+ .....+.++++++|+......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN 80 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence 7999999999999999999999999999999999999999999999999999866533 245577899999998654322
Q ss_pred ce--eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCC
Q 002928 80 MS--FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGY 157 (864)
Q Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (864)
.. ..+. .+++.+.+.. ....+.+.. .....++... ........++.++.+|+...++
T Consensus 81 ~~~~~~~~-~~g~~~~~~~----------~~~~l~~~~---~~~~~~~~~~-------~~~~~~~~~~~s~~~~l~~~g~ 139 (421)
T 3nrn_A 81 SNPKGKIL-WEGKIFHYRE----------SWKFLSVKE---KAKALKLLAE-------IRMNKLPKEEIPADEWIKEKIG 139 (421)
T ss_dssp CSSSCEEE-ETTEEEEGGG----------GGGGCC-----------CCHHH-------HHTTCCCCCCSBHHHHHHHHTC
T ss_pred CCCCeEEE-ECCEEEEcCC----------chhhCCHhH---HHHHHHHHHH-------HHhccCCCCCCCHHHHHHHhcC
Confidence 21 1122 2343333321 111111110 0011111100 0000111135889999999866
Q ss_pred CHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcc
Q 002928 158 SELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCE 237 (864)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~ 237 (864)
.......++.|+....++.++.+++.......+..... ...+.++.||+..++++|++.++++|++|++|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~ 211 (421)
T 3nrn_A 140 ENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALR--------WGGPGLIRGGCKAVIDELERIIMENKGKILTRKE 211 (421)
T ss_dssp CCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHH--------HCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCC
T ss_pred CcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhh--------cCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCe
Confidence 66777778889888889988887743222322222211 1245689999999999999999999999999999
Q ss_pred eEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhc-CCCChHHHHhhccCceee-ceEEEecCCCCCCC------
Q 002928 238 VRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLG-NQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPR------ 309 (864)
Q Consensus 238 V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~-~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~------ 309 (864)
|++|+.++++| | +.+|++++||.||+|+++..+.++++ +..+....+.+..+.+.. .++.+..+...++.
T Consensus 212 V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 289 (421)
T 3nrn_A 212 VVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFT 289 (421)
T ss_dssp EEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSSCSSEEEC
T ss_pred EEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCcccCCeEEEc
Confidence 99999888898 6 55677899999999999999999887 335555666677777765 34555555443222
Q ss_pred -CcC----Cccc-ceeccCCCCceEEEEeccccc----cCccCCCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHH
Q 002928 310 -NPA----AWSA-WNFLGSTGGKVCLTYWLNVVQ----NIEETRLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASL 379 (864)
Q Consensus 310 -~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~ 379 (864)
+.. .+.+ +.-...|++..++........ .+.+...+.+.+++| ......+.+|...+|.+.+.....
T Consensus 290 ~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p-~~~~~~~~~~~~~~p~~~~~~~~~-- 366 (421)
T 3nrn_A 290 PGLMINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFP-EGEPLLAQVYRDGNPVNRTRAGLH-- 366 (421)
T ss_dssp TTSSSCEEECGGGTCGGGSCTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHCT-TCEEEEEEEC-------------C--
T ss_pred CCcceeeEeccCCCCCCcCCCCceEEEEEEeeccccHHHHHHHHHHHHHHHcC-CCeEEEeeeccCCCCcccccCCCC--
Confidence 111 0111 111114556554433221111 111222334455666 222224567888888885443332
Q ss_pred hhhhhcCCCCeEEEeccCCCC-CC--hhhHhHHHHHHHHhcccc
Q 002928 380 ELDHIQGKRGIWFCGAYQGYG-FH--EDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 380 ~l~~~~~~~~l~~aG~~~g~G-~~--e~a~~sG~~aA~~ilg~~ 420 (864)
+. ..+ +|||+||+|...+ -. ++|+.||++||+.| |..
T Consensus 367 -~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l-~~~ 406 (421)
T 3nrn_A 367 -IE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL-NLG 406 (421)
T ss_dssp -CC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT-TSC
T ss_pred -CC-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh-CcC
Confidence 33 456 9999999975333 23 99999999999999 544
No 14
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.96 E-value=3.9e-28 Score=279.57 Aligned_cols=389 Identities=15% Similarity=0.112 Sum_probs=250.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.|.+.+|+.+|.|+++++. .++++.++++++|+.......
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~~l~~lgl~~~~~~~ 118 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW-HQSHVWREITRYKMHNALSPS 118 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT-TSHHHHHHHHHTTCTTCEEES
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecC-ccHHHHHHHHHcCCcceeecc
Confidence 3799999999999999999999999999999999999999999999999999999964 577888999999984322111
Q ss_pred ------eeeEEecC--CCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHH----hhc---cCC-----
Q 002928 81 ------SFSVSLDK--GQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLE----DLE---NNA----- 140 (864)
Q Consensus 81 ------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~----- 140 (864)
...+.... +....++. ......+... . ..+.. ... ..+
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~----------------~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~ 176 (495)
T 2vvm_A 119 FNFSRGVNHFQLRTNPTTSTYMTH----------------EAEDELLRSA---L---HKFTNVDGTNGRTVLPFPHDMFY 176 (495)
T ss_dssp CCCSSSCCEEEEESSTTCCEEECH----------------HHHHHHHHHH---H---HHHHCSSSSTTTTTCSCTTSTTS
T ss_pred cccCCCceEEEecCCCCceeecCH----------------HHHHHHHHHH---H---HHHHccchhhhhhcCCCCCCccc
Confidence 01111111 22111110 0000001100 0 01111 000 000
Q ss_pred ----cCCCCccHHHHHHhcC--CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCC--CccCCCCcEEEecC
Q 002928 141 ----DIDRNETLGQFVETRG--YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHA--LQIFGRPQWLTVRS 212 (864)
Q Consensus 141 ----~~~~~~s~~~~l~~~~--~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 212 (864)
...++.++.+|+.+.+ .++.. ..++.+++...++.+++++ ++..++.++..... .........++++|
T Consensus 177 ~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 252 (495)
T 2vvm_A 177 VPEFRKYDEMSYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENS---SFGEFLHWWAMSGYTYQGCMDCLMSYKFKD 252 (495)
T ss_dssp STTHHHHHTSBHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSSHHHHHHHHHSEEETT
T ss_pred CcchhhhhhhhHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchh---hHHHHHHHHHHcCCCHHHHHhhhceEEeCC
Confidence 0013578999999876 66654 5678888888888888777 55555554432110 00011123557899
Q ss_pred ChHHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhh-cCCCChHHHHhhcc
Q 002928 213 RSRSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRML-GNQATFEEKRVLGA 290 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll-~~~~~~~~~~~l~~ 290 (864)
|+..+++.|++.+.+.| ++|++|++|++|+..++++.|++.+|++++||+||+|+|+..+.++. .+.++....+.+..
T Consensus 253 G~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~ 332 (495)
T 2vvm_A 253 GQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQA 332 (495)
T ss_dssp CHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHh
Confidence 99999999999999988 99999999999999888899999998889999999999999887764 34466777788888
Q ss_pred Cceee-ceEEEecCCCCCCC-------CcCCcccceeccCCCCceEEEEeccccccCcc-----CCCCeEEEcCCCC-CC
Q 002928 291 FQYVY-SDIFLHRDKNFMPR-------NPAAWSAWNFLGSTGGKVCLTYWLNVVQNIEE-----TRLPFLVTLNPDH-TP 356 (864)
Q Consensus 291 ~~~~~-~~~~l~~d~~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~p~~-~~ 356 (864)
+.+.. .++.+.++.++++. .......|.....+++..++..+......+.. .+.+.+.+++|.. .+
T Consensus 333 ~~~~~~~kv~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~ 412 (495)
T 2vvm_A 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGV 412 (495)
T ss_dssp CCCCCCEEEEEEESCGGGGGEEEEECSSCSSCEEEEEEECTTSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCE
T ss_pred cCCCceeEEEEEECCccCCCceeEecCCCCcEEEecCCCCCCCCeEEEEEeCccccCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 88765 67888888765421 00010012111134443333334432211111 1111223345541 22
Q ss_pred cc-eeeeEE------cCCCCCCHHHHHH-HHhhhhhcCCCCeEEEeccCC---CCCChhhHhHHHHHHHHhcc
Q 002928 357 EH-TLFKWS------TSHPVPSVAASKA-SLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 357 ~~-~~~~w~------~~~p~~~~~~~~~-~~~l~~~~~~~~l~~aG~~~g---~G~~e~a~~sG~~aA~~ilg 418 (864)
.. ..++|. ..++.+.++.... .+.+. ++.++|||||+++. +|++++|+.||+++|+.|+.
T Consensus 413 ~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~--~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~ 483 (495)
T 2vvm_A 413 KRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLR--EKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLE 483 (495)
T ss_dssp EEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHH--CCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHh--CcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHH
Confidence 22 345674 3556666766533 23332 46789999999753 56669999999999999975
No 15
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.96 E-value=9.9e-28 Score=277.60 Aligned_cols=397 Identities=16% Similarity=0.172 Sum_probs=252.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC-CeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID-GVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~-G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.|.+.. |+.+|.|+++++.. .+.+.++++++|++.....
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~~~ 83 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYKVN 83 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCcceecc
Confidence 489999999999999999999999999999999999999999995 99999999999654 6778899999998765432
Q ss_pred ce-eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccC-C------cCCCCccHHHH
Q 002928 80 MS-FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENN-A------DIDRNETLGQF 151 (864)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~s~~~~ 151 (864)
.. ..+...+++.+.+... ++. ...+... .+..++......+....... + ...++.++.+|
T Consensus 84 ~~~~~~~~~~g~~~~~~~~--~p~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 151 (520)
T 1s3e_A 84 EVERLIHHVKGKSYPFRGP--FPP-------VWNPITY---LDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKEL 151 (520)
T ss_dssp CSSEEEEEETTEEEEECSS--SCC-------CCSHHHH---HHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHH
T ss_pred cCCceEEEECCEEEEecCC--CCC-------CCCHHHH---HHHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHH
Confidence 21 1222234443333221 110 0111110 11111111111111111000 0 00146799999
Q ss_pred HHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCC----ccCCCCcEEEecCChHHHHHHHHHHHhh
Q 002928 152 VETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHAL----QIFGRPQWLTVRSRSRSYVDKVIELLES 227 (864)
Q Consensus 152 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~gG~~~l~~~La~~~~~ 227 (864)
+.+....+.. ..++.+++...++.+++++ ++..++.++...+.. .......+.++.||++.++++|++.+
T Consensus 152 l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-- 225 (520)
T 1s3e_A 152 LDKLCWTESA-KQLATLFVNLCVTAETHEV---SALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-- 225 (520)
T ss_dssp HHHHCSSHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH--
T ss_pred HHhhCCCHHH-HHHHHHHHhhhcCCChHHh---HHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc--
Confidence 9998777654 6678888888899888776 555555555432211 11123456789999999999999988
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhh-cCCCChHHHHhhccCceee-ceEEEecCCC
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRML-GNQATFEEKRVLGAFQYVY-SDIFLHRDKN 305 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~ 305 (864)
|++|++|++|++|+.++++|.|++.+|++++||+||+|+|+..+.+++ .+.++....+.+..+++.. .++.+.++.+
T Consensus 226 -g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~ 304 (520)
T 1s3e_A 226 -GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEP 304 (520)
T ss_dssp -GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSC
T ss_pred -CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCC
Confidence 889999999999998888899999999899999999999999887765 3446677788888888876 5788888888
Q ss_pred CCCCCcC---C-------cccceecc-CCCC--ceEEEEecccc----ccCc-----cCCCCeEEEcCCCC---CCcc-e
Q 002928 306 FMPRNPA---A-------WSAWNFLG-STGG--KVCLTYWLNVV----QNIE-----ETRLPFLVTLNPDH---TPEH-T 359 (864)
Q Consensus 306 ~~p~~~~---~-------~~~~~~~~-~~~~--~~~~~~~~~~~----~~l~-----~~~~~~~~~l~p~~---~~~~-~ 359 (864)
+|+.... . .-.+.+.. .+++ ..+..+..... ..+. +.+.+.+.++++.. .|.. .
T Consensus 305 ~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~ 384 (520)
T 1s3e_A 305 FWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYE 384 (520)
T ss_dssp GGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEE
T ss_pred cccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCccEEE
Confidence 7754310 0 00011111 1222 23333322211 1111 11111222333321 2222 4
Q ss_pred eeeEEc------C-CCCCCHHHHHHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 360 LFKWST------S-HPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 360 ~~~w~~------~-~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
.++|.. . .+.+.++........ ..++.+||||||+++ +.|..++|+.||+++|++|+.
T Consensus 385 ~~~W~~~~~~~G~~~~~~~~g~~~~~~~~-l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~ 452 (520)
T 1s3e_A 385 EKNWCEEQYSGGCYTTYFPPGILTQYGRV-LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452 (520)
T ss_dssp EEEGGGCTTTCSSSCBCCCTTHHHHHGGG-TTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCCCCccccCCCccccchHH-HhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHH
Confidence 456752 1 124555543322211 134678999999964 445449999999999999975
No 16
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.95 E-value=1.6e-27 Score=275.25 Aligned_cols=396 Identities=18% Similarity=0.211 Sum_probs=249.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.|.+.+|+.+|.|+++++. .++.+.++++++|+.......
T Consensus 14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~lgl~~~~~~~ 92 (504)
T 1sez_A 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-SEGDVTFLIDSLGLREKQQFP 92 (504)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC-CSHHHHHHHHHTTCGGGEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc-CcHHHHHHHHHcCCcccceec
Confidence 4899999999999999999999999999999999999999999999999999999853 567888999999987543211
Q ss_pred ---eeeEEecCCCceeecCCCCCCchhhhhh-hcCChHHHHHHHHHHhHHHHHHHHHHhhcc-CCcCCCCccHHHHHHhc
Q 002928 81 ---SFSVSLDKGQGCEWSSRNGMSGLFAQKK-NLLNPYFWQMLREIIKFNDDVLSYLEDLEN-NADIDRNETLGQFVETR 155 (864)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~l~~~ 155 (864)
.......+|+.+.++. ....... ...... ..++... . .+...... ......+.++.+|+.+.
T Consensus 93 ~~~~~~~~~~~g~~~~~p~-----~~~~~~~~~~~~~~--~~~~~~~---~---~~~~~~~~~~~~~~~~~s~~~~l~~~ 159 (504)
T 1sez_A 93 LSQNKRYIARNGTPVLLPS-----NPIDLIKSNFLSTG--SKLQMLL---E---PILWKNKKLSQVSDSHESVSGFFQRH 159 (504)
T ss_dssp SSCCCEEEESSSSEEECCS-----SHHHHHHSSSSCHH--HHHHHHT---H---HHHC----------CCCBHHHHHHHH
T ss_pred cCCCceEEEECCeEEECCC-----CHHHHhccccCCHH--HHHHHhH---h---hhccCcccccccCCCCccHHHHHHHH
Confidence 1122234444433221 0111000 111110 0011000 0 00000000 00112568999999987
Q ss_pred CCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHH-hhcC---------CCcc---------------CCCCcEEEe
Q 002928 156 GYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFC-RNHH---------ALQI---------------FGRPQWLTV 210 (864)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---------~~~~---------------~~~~~~~~~ 210 (864)
+++.+.+.++.|++.+.|+.++++++.......+..+ ...+ .... ......+++
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (504)
T 1sez_A 160 -FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSF 238 (504)
T ss_dssp -HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEE
T ss_pred -cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEee
Confidence 7788888999999999999999887421111111111 0000 0000 012346788
Q ss_pred cCChHHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCe------EEEEEC--CC---cEEecCEEEEccChHHHHHhhc-
Q 002928 211 RSRSRSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEG------RIEIRG--DD---FQRVYDGCIMAVHAPDALRMLG- 277 (864)
Q Consensus 211 ~gG~~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~------~~V~~~--~G---~~~~ad~VV~A~~~~~~~~ll~- 277 (864)
+||++.++++|++.+ + ++|++|++|++|+.++++ |.|++. +| ++++||+||+|+|+..+.+++.
T Consensus 239 ~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~ 315 (504)
T 1sez_A 239 LGGMQTLTDAICKDL---REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIA 315 (504)
T ss_dssp TTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEE
T ss_pred CcHHHHHHHHHHhhc---ccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhc
Confidence 999999999999877 4 799999999999998877 777664 45 5789999999999999988873
Q ss_pred ---CCCChHHHHhhccCceee-ceEEEecCCCCCCCCcC--------------------Ccccceecc-CCCCceEEEEe
Q 002928 278 ---NQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPA--------------------AWSAWNFLG-STGGKVCLTYW 332 (864)
Q Consensus 278 ---~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~--------------------~~~~~~~~~-~~~~~~~~~~~ 332 (864)
...++ ..++.+.+.+ .++.+.++.+.++.... .|.+..+.. .|++..++..+
T Consensus 316 ~~~~~~~~---~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~ 392 (504)
T 1sez_A 316 KRGNPFLL---NFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTF 392 (504)
T ss_dssp SSSSBCCC---TTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEE
T ss_pred ccCCcccH---HHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEE
Confidence 11222 2266677755 56667776655442110 111111221 35555555544
Q ss_pred ccccc--cC--------ccCCCCeEEEcCCC-CCCcc-eeeeEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEEeccC-C
Q 002928 333 LNVVQ--NI--------EETRLPFLVTLNPD-HTPEH-TLFKWSTSHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ-G 398 (864)
Q Consensus 333 ~~~~~--~l--------~~~~~~~~~~l~p~-~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~-g 398 (864)
+.... .+ .+...+.+.++.+. ..+.. .+.+|...+|.+.+++......+.. .++.+|||+||+++ |
T Consensus 393 ~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g 472 (504)
T 1sez_A 393 VGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGG 472 (504)
T ss_dssp EESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSC
T ss_pred eCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCC
Confidence 43211 01 01011112223222 12323 5679999999999988776655543 34578999999975 5
Q ss_pred CCCChhhHhHHHHHHHHhcc
Q 002928 399 YGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 399 ~G~~e~a~~sG~~aA~~ilg 418 (864)
.|+ ++|+.||+++|+.|+.
T Consensus 473 ~~v-~gai~sG~~aA~~il~ 491 (504)
T 1sez_A 473 LSV-GKALSSGCNAADLVIS 491 (504)
T ss_dssp SSH-HHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHH
Confidence 566 9999999999999975
No 17
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.95 E-value=3.1e-27 Score=272.53 Aligned_cols=276 Identities=17% Similarity=0.173 Sum_probs=146.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCccc---
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI--- 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~--- 77 (864)
|+|||||||++||+||++|+++|++|+||||++++||+++|++.+|+.+|.|++++.. ...+.++++.+|.....
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~--~~~~~~l~~~~g~~~~~~~~ 79 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD--PSAIEELFALAGKQLKEYVE 79 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC--THHHHHHHHTTTCCGGGTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC--chhHHHHHHHhcchhhhcee
Confidence 7899999999999999999999999999999999999999999999999999998842 33455788888765332
Q ss_pred ---ccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCC----------
Q 002928 78 ---SDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDR---------- 144 (864)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 144 (864)
.+..+.+.+.+|..+.+... .......+... .|... ..+.++..................+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~l~~~-~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 4dgk_A 80 LLPVTPFYRLCWESGKVFNYDND--QTRLEAQIQQF-NPRDV---EGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRA 153 (501)
T ss_dssp EEEESSSEEEEETTSCEEEECSC--HHHHHHHHHHH-CTHHH---HHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHS
T ss_pred eEecCcceEEEcCCCCEEEeecc--HHHHHHHHhhc-Ccccc---chhhhHHHHHHHhhhhhhhhccccccchhhhhhhh
Confidence 12223344455655544321 00011111111 11111 1122222211111110000000001
Q ss_pred ---------CccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChH
Q 002928 145 ---------NETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSR 215 (864)
Q Consensus 145 ---------~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 215 (864)
..++.+++.+....+.+... +. .....++.++.+. .....++..+.. ..+.++++||++
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-l~-~~~~~~g~~p~~~--~~~~~~~~~~~~--------~~G~~~p~GG~~ 221 (501)
T 4dgk_A 154 APQLAKLQAWRSVYSKVASYIEDEHLRQA-FS-FHSLLVGGNPFAT--SSIYTLIHALER--------EWGVWFPRGGTG 221 (501)
T ss_dssp GGGTTTSHHHHHHHHHHHTTCCCHHHHHH-HH-HHHHHHHSCC--C--CCTHHHHHHHHS--------CCCEEEETTHHH
T ss_pred hhhhhhhhhcccHHHHHHHHhccHHHHhh-hh-hhhcccCCCcchh--hhhhhhhhhhhc--------cCCeEEeCCCCc
Confidence 12344455554333332221 11 1111222222221 122222222221 234568999999
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHHHH-HhhcCC-CChHHHHhhccCc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPDAL-RMLGNQ-ATFEEKRVLGAFQ 292 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~~~-~ll~~~-~~~~~~~~l~~~~ 292 (864)
.++++|++.++++|++|++|++|++|+.++++++ |++++|+++.||.||+++++..+. .|++.. .+....+.+....
T Consensus 222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 301 (501)
T 4dgk_A 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKR 301 (501)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--------------------------
T ss_pred chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccc
Confidence 9999999999999999999999999999999974 889999999999999998877654 455532 2233344455555
Q ss_pred eeec
Q 002928 293 YVYS 296 (864)
Q Consensus 293 ~~~~ 296 (864)
+...
T Consensus 302 ~~~s 305 (501)
T 4dgk_A 302 MSNS 305 (501)
T ss_dssp -CCE
T ss_pred cCCc
Confidence 5443
No 18
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.95 E-value=9.1e-27 Score=265.08 Aligned_cols=398 Identities=15% Similarity=0.125 Sum_probs=244.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.|...+|+.+|.|+++++. ..+.+.++++++|++......
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 84 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP-DQTALISLLDELGLKTFERYR 84 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT-TCHHHHHHHHHTTCCEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecC-ccHHHHHHHHHcCCccccccc
Confidence 3899999999999999999999999999999999999999999999999999999854 367788999999987644322
Q ss_pred e-eeEEecC-CCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhh--ccCCc--CCCCccHHHHHHh
Q 002928 81 S-FSVSLDK-GQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDL--ENNAD--IDRNETLGQFVET 154 (864)
Q Consensus 81 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~s~~~~l~~ 154 (864)
. ..+...+ ++.+.+... +. ...+.....+.............+... ...+. ..+..++.+|+.+
T Consensus 85 ~~~~~~~~~~g~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (453)
T 2yg5_A 85 EGESVYISSAGERTRYTGD--SF--------PTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLIN 154 (453)
T ss_dssp CSEEEEECTTSCEEEECSS--SC--------SCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHH
T ss_pred CCCEEEEeCCCceeeccCC--CC--------CCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHh
Confidence 1 1122222 444433221 10 011111111111111111111111000 00000 0146789999999
Q ss_pred cCCCHHHHHHHHhhhhhcccCCChh-hhhcCCHHHHHHHHhhcCCCc-c--CCCCcEEEecCChHHHHHHHHHHHhhcCc
Q 002928 155 RGYSELFQKAYLVPVCGSIWSCSSE-KVMSCSAFSVLSFCRNHHALQ-I--FGRPQWLTVRSRSRSYVDKVIELLESLGC 230 (864)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~gG~~~l~~~La~~~~~~G~ 230 (864)
....+.+ ..++.+++...|+.+++ ++ ++..++.++...+... . .....+++++||+..++++|++.+ |+
T Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~ 227 (453)
T 2yg5_A 155 QSDDAEA-RDNIGLFIAGGMLTKPAHSF---SALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL---GD 227 (453)
T ss_dssp HCSCHHH-HHHHHHHHCCCCCCSCTTSS---BHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHH---GG
T ss_pred hcCCHHH-HHHHHHHHHhhcccCCcccc---cHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhc---CC
Confidence 8776654 44778888788888877 66 5555544443321100 0 001235789999999999999987 78
Q ss_pred eEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHHHHHhhc-CCCChHHHHhhccCceee-ceEEEecCCCCC
Q 002928 231 QIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPDALRMLG-NQATFEEKRVLGAFQYVY-SDIFLHRDKNFM 307 (864)
Q Consensus 231 ~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~-~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~ 307 (864)
+|++|++|++|+.++++ |.|++ +|++++||+||+|+|+..+.+++. +.++....+.+..+++.. .++.+.++.++|
T Consensus 228 ~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w 306 (453)
T 2yg5_A 228 DVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306 (453)
T ss_dssp GEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGG
T ss_pred cEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCC
Confidence 99999999999999888 88877 677899999999999998877653 446667777888888766 577788887776
Q ss_pred CCCc---CCc-c----cceecc-CCCC-ceEEEEeccc-c---------ccCccCCCCeEEEcCCCC--CCcc-eeeeEE
Q 002928 308 PRNP---AAW-S----AWNFLG-STGG-KVCLTYWLNV-V---------QNIEETRLPFLVTLNPDH--TPEH-TLFKWS 364 (864)
Q Consensus 308 p~~~---~~~-~----~~~~~~-~~~~-~~~~~~~~~~-~---------~~l~~~~~~~~~~l~p~~--~~~~-~~~~w~ 364 (864)
+... ... . .+.+.. .+++ ..++..+... . +.+.+.+.+.+.++++.. .+.. ..++|.
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~ 386 (453)
T 2yg5_A 307 REDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWG 386 (453)
T ss_dssp GGGTEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTT
T ss_pred CCCCCCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCCCccEEEEeecC
Confidence 5321 000 0 111211 2332 2333333321 0 011111111222233321 1222 344665
Q ss_pred c---C----CCCCCHHHHHHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 365 T---S----HPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 365 ~---~----~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
. . .|.+.++....... ...++.+||||||+++ +.|..++|+.||+++|++|+.
T Consensus 387 ~~~~~~G~~~~~~~~g~~~~~~~-~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 449 (453)
T 2yg5_A 387 SEEWTRGCYAASFDLGGLHRYGA-DSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIA 449 (453)
T ss_dssp TCTTTCSSSCEEECTTHHHHHGG-GTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCCCCccccchH-HHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHH
Confidence 2 1 12344554332221 1134678999999974 455459999999999999974
No 19
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.95 E-value=6.1e-27 Score=252.08 Aligned_cols=251 Identities=17% Similarity=0.245 Sum_probs=208.0
Q ss_pred CchHHHHHhh-hhhhcCChHHHHhhcCCC-CcccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCeEEEEcCCchHHH
Q 002928 568 NTLTQARRNI-SRHYDLSNELFSLFLDKS-MLYSCAIFKSEHEDLEVAQMRKVSLLIQKAR-VSKGHEVLEIGCGWGTLA 644 (864)
Q Consensus 568 ~~~~~~~~~i-~~~Yd~~~~~~~~~~~~~-~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~ 644 (864)
|...++++++ ..|||.+++++..+.++. +.|++++|.. ....+....+.+++.+. ++++.+|||||||+|.++
T Consensus 57 ~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~ 132 (312)
T 3vc1_A 57 NLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSM 132 (312)
T ss_dssp HHHHHTTTTCCCCSCCCSCCCHHHHCCTTSTTHHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHH
T ss_pred hhhcccccchhhhhcCCchhHHHhhcCCCccccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHH
Confidence 5566777788 899999999999999988 9999999975 23333444467888887 889999999999999999
Q ss_pred HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHh
Q 002928 645 IEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCES 723 (864)
Q Consensus 645 ~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~ 723 (864)
..+++..+++|+|+|+|+++++.|+++++..++.++++++++|+.+++ ++++||+|++..+++|++ +..+++++.+
T Consensus 133 ~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~ 209 (312)
T 3vc1_A 133 VMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSR 209 (312)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHH
Confidence 999997788999999999999999999999999889999999999988 678999999999999993 7999999999
Q ss_pred ccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHHH
Q 002928 724 LLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFL 803 (864)
Q Consensus 724 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~ 803 (864)
+|||||++++.+....... ........++..+.++ .+++..++.+.+++ +||++++++.++ ..++..|..+|.
T Consensus 210 ~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~~-aGf~~~~~~~~~---~~~~~~w~~~~~ 282 (312)
T 3vc1_A 210 FLKVGGRYVTITGCWNPRY-GQPSKWVSQINAHFEC--NIHSRREYLRAMAD-NRLVPHTIVDLT---PDTLPYWELRAT 282 (312)
T ss_dssp HEEEEEEEEEEEEEECTTT-CSCCHHHHHHHHHHTC--CCCBHHHHHHHHHT-TTEEEEEEEECH---HHHHHHHHHHTT
T ss_pred HcCCCcEEEEEEccccccc-cchhHHHHHHHhhhcC--CCCCHHHHHHHHHH-CCCEEEEEEeCC---HHHHHHHHHHHH
Confidence 9999999999887654422 1111223344444444 37889999888886 999999999887 468899999888
Q ss_pred HhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEc
Q 002928 804 EKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSR 847 (864)
Q Consensus 804 ~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~ 847 (864)
.. ...|+++.|.+ .|+.|.+++++|+++|
T Consensus 283 ~~----~~~g~~~~~~~-----------~~~~~~~~y~~i~a~k 311 (312)
T 3vc1_A 283 SS----LVTGIEKAFIE-----------SYRDGSFQYVLIAADR 311 (312)
T ss_dssp ST----TCCSCHHHHHH-----------HHHHTSEEEEEEEEEE
T ss_pred Hh----hhhcChHHHHH-----------HHHhcCCcEEEEEEee
Confidence 54 24577777776 7778999999999988
No 20
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.94 E-value=7.4e-26 Score=257.97 Aligned_cols=389 Identities=15% Similarity=0.131 Sum_probs=246.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCCCCcceeE-eeCCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSLGGHAKTV-TIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~GG~~~s~-~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
+||+|||||++||+||++|+++| .+|+|+|+++++||++.+. ..+|+.+|.|++.+.. .++.+.+++++++.+...
T Consensus 10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~- 87 (484)
T 4dsg_A 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS-HYQYFDDVMDWAVQGWNV- 87 (484)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC-SBHHHHHHHHHHCSCEEE-
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc-ChHHHHHHHHHHhhhhhh-
Confidence 48999999999999999999998 7999999999999999996 6689999999999853 677788999887521111
Q ss_pred cceeeEEecCCCceeecCCCCCCchhhhhhhcCChH-HHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCC
Q 002928 79 DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPY-FWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGY 157 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (864)
.........+|+.+.++....+ ..+... ....+..+.+. . ......++.++++|+.++ +
T Consensus 88 ~~~~~~~~~~g~~~~~P~~~~~--------~~l~~~~~~~~~~~ll~~----------~-~~~~~~~~~s~~e~~~~~-~ 147 (484)
T 4dsg_A 88 LQRESWVWVRGRWVPYPFQNNI--------HRLPEQDRKRCLDELVRS----------H-ARTYTEPPNNFEESFTRQ-F 147 (484)
T ss_dssp EECCCEEEETTEEEESSGGGCG--------GGSCHHHHHHHHHHHHHH----------H-HCCCSSCCSSHHHHHHHH-H
T ss_pred ccCceEEEECCEEEEeCccchh--------hhCCHHHHHHHHHHHHHH----------H-hccCCCCCCCHHHHHHHH-h
Confidence 1111122234554444311111 111111 11111111111 0 111223678999999988 7
Q ss_pred CHHHHHHHHhhhhhcccCCChhhhhcCC---------HHHHHH-HHhhcCCCccCCCCcEEE-ecCChHHHHHHHHHHHh
Q 002928 158 SELFQKAYLVPVCGSIWSCSSEKVMSCS---------AFSVLS-FCRNHHALQIFGRPQWLT-VRSRSRSYVDKVIELLE 226 (864)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~-~~gG~~~l~~~La~~~~ 226 (864)
+..+.+.++.|++.++|+.++++++... +..++. .+....-...-....+.+ ..||++.++++|++.+.
T Consensus 148 g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~ 227 (484)
T 4dsg_A 148 GEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLP 227 (484)
T ss_dssp HHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhh
Confidence 7888888999999999999999986432 122211 111110000001123334 45999999999999985
Q ss_pred hcCceEEeC--cceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcC---CCChHHHHhhccCceee-ceEEE
Q 002928 227 SLGCQIKTG--CEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGN---QATFEEKRVLGAFQYVY-SDIFL 300 (864)
Q Consensus 227 ~~G~~I~~~--~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~---~~~~~~~~~l~~~~~~~-~~~~l 300 (864)
+ .+|+++ ++|++|+.++++| ++.+|++++||+||+|+|++.+.+++.+ ..++...+.+..++|.+ .++.+
T Consensus 228 ~--~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l 303 (484)
T 4dsg_A 228 S--EKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGI 303 (484)
T ss_dssp G--GGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEE
T ss_pred h--CeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEE
Confidence 4 289999 5699999887765 4578888999999999999999988854 24566677888899987 45556
Q ss_pred ecCCCCC-----------CCCcC------CcccceeccCCCCceEEEEecccc--cc-----CccCCCCeEEEcCCCCC-
Q 002928 301 HRDKNFM-----------PRNPA------AWSAWNFLGSTGGKVCLTYWLNVV--QN-----IEETRLPFLVTLNPDHT- 355 (864)
Q Consensus 301 ~~d~~~~-----------p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~-----l~~~~~~~~~~l~p~~~- 355 (864)
.++.... |.... .++++.-...|++..++....... .. +.+.....+.++....+
T Consensus 304 ~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~ 383 (484)
T 4dsg_A 304 GVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPE 383 (484)
T ss_dssp EEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTT
T ss_pred EEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCcc
Confidence 6654321 21111 112221112345544442222111 11 10000111122221111
Q ss_pred -C-c-ceeeeEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEEeccCC-----CCCChhhHhHHHHHHHHhc
Q 002928 356 -P-E-HTLFKWSTSHPVPSVAASKASLELDH-IQGKRGIWFCGAYQG-----YGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 356 -~-~-~~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~g-----~G~~e~a~~sG~~aA~~il 417 (864)
+ . ..+.+|..++|++.+++.+....+.. .... ||+++|.+.. .+. +.|+.+|+.+|+.|+
T Consensus 384 ~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~-d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 384 DLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQ-DHSFMQGVEAIDHVL 452 (484)
T ss_dssp CCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSH-HHHHHHHHHHHHHHT
T ss_pred ceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCCh-HHHHHHHHHHHHHHH
Confidence 1 1 14668999999999999888877776 3334 9999999543 344 899999999999998
No 21
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.93 E-value=4e-25 Score=249.84 Aligned_cols=390 Identities=16% Similarity=0.173 Sum_probs=235.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC---CeeeccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID---GVDLDLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~---G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.+.+.+ |..++.|+++++....+.+.++++++|++...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAA 81 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeee
Confidence 489999999999999999999999999999999999999998887 99999999998654377788889999998655
Q ss_pred ccceeeEEe-cCCCceeecCCCCCCchhhhhhhcCChHHHHHH-HHHHhHHHHHHHHHHhhccC-----Cc-CCCCccHH
Q 002928 78 SDMSFSVSL-DKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQML-REIIKFNDDVLSYLEDLENN-----AD-IDRNETLG 149 (864)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~s~~ 149 (864)
......... ..+..+. ..+. ........+ ....++.. ........ +. ...+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~d~s~~ 144 (431)
T 3k7m_X 82 ASEFTSFRHRLGPTAVD--------QAFP-----IPGSEAVAVEAATYTLLR----DAHRIDLEKGLENQDLEDLDIPLN 144 (431)
T ss_dssp CCCCCEECCBSCTTCCS--------SSSC-----CCGGGHHHHHHHHHHHHH----HHTTCCTTTCTTSSSCGGGCSBHH
T ss_pred cCCCCcEEEEecCCeec--------CCCC-----CCHHHHHHHHHHHHHHHH----HHHhcCCCCCccCcchhhhcCCHH
Confidence 433322221 1111110 0000 001111111 11111111 11110000 00 01127889
Q ss_pred HHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCC--CccCCCCcEEEecCChHHHHHHHHHHHhh
Q 002928 150 QFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHA--LQIFGRPQWLTVRSRSRSYVDKVIELLES 227 (864)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~l~~~La~~~~~ 227 (864)
+++...+..+... .++.+.....++.+.+++ +...+..++...+. ...+..... .+.+|+..+++.+++..
T Consensus 145 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~-- 217 (431)
T 3k7m_X 145 EYVDKLDLPPVSR-QFLLAWAWNMLGQPADQA---SALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEI-- 217 (431)
T ss_dssp HHHHHHTCCHHHH-HHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTC--
T ss_pred HHHHhcCCCHHHH-HHHHHHHHHhcCCChhhh---hHHHHHHHHHhcCCccceeecchhh-hcCCcHHHHHHHHHhhC--
Confidence 9999887766543 345666677777776665 45554444433210 000111223 78899999988887654
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhh-cCCCChHHHHhhccCceee-ceEEEecCCC
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRML-GNQATFEEKRVLGAFQYVY-SDIFLHRDKN 305 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~ 305 (864)
| +|++|++|++|+.++++++|++.+|++++||+||+|+|...+.++. .+.++....+.+..+.+.. .++.+.++++
T Consensus 218 -g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~ 295 (431)
T 3k7m_X 218 -P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGA 295 (431)
T ss_dssp -S-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESC
T ss_pred -C-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCC
Confidence 7 9999999999999888999999999789999999999998877653 3456677777777766655 5666777665
Q ss_pred CCCC---CcCCcc-cceeccC-CCCceEEEEeccccccCc--cCCCCeEEEcCCCCCCcc-eeeeEEc------CCCCCC
Q 002928 306 FMPR---NPAAWS-AWNFLGS-TGGKVCLTYWLNVVQNIE--ETRLPFLVTLNPDHTPEH-TLFKWST------SHPVPS 371 (864)
Q Consensus 306 ~~p~---~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~--~~~~~~~~~l~p~~~~~~-~~~~w~~------~~p~~~ 371 (864)
+..- +..... .+.+... .++..++.+......... +.+...+..++|...+.. ..++|.. .+..+.
T Consensus 296 ~~~i~~~~d~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~d~~~~G~~~~~~ 375 (431)
T 3k7m_X 296 EAGIECVGDGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKDAVLYYLPEVEVLGIDYHDWIADPLFEGPWVAPR 375 (431)
T ss_dssp CTTEEEEBSSSSSEEEEEEECSSSEEEEEEEEETTTCCTTCHHHHHHHHHHHCTTCEEEEEECCCTTTCTTTSSSSCCCC
T ss_pred CcCceEcCCCCEEEEEeCcCCCCCCeEEEEEeccccCCCCCHHHHHHHHHHhcCCCCccEeEecccCCCCCCCCCCCCcC
Confidence 4210 000000 0222212 223334443322210000 011223344555533222 3346762 333344
Q ss_pred HHHHHH-HHhhhhhcCCCCeEEEecc---CCCCCChhhHhHHHHHHHHhcc
Q 002928 372 VAASKA-SLELDHIQGKRGIWFCGAY---QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 372 ~~~~~~-~~~l~~~~~~~~l~~aG~~---~g~G~~e~a~~sG~~aA~~ilg 418 (864)
++.... .+.+ .++.++|||||.. ..+|++++|+.||.++|++|+-
T Consensus 376 ~g~~~~~~~~l--~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~ 424 (431)
T 3k7m_X 376 VGQFSRVHKEL--GEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILH 424 (431)
T ss_dssp TTTTTTSSGGG--GSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHH--hCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHh
Confidence 443211 1122 2467899999973 3667779999999999999974
No 22
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.93 E-value=1.4e-24 Score=228.36 Aligned_cols=220 Identities=19% Similarity=0.228 Sum_probs=185.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
.+..+.+++.+.++++.+|||||||+|.++..+++..+++|+|+|+|+++++.|+++.... ++++++++|+.+++ +
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC
Confidence 4556788888899999999999999999999999976889999999999999999886543 48999999999988 6
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccC-CCCCCCHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP-GGCLPSLNRITSA 772 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~ 772 (864)
+++||+|++..+++|++.+++..+++++.++|||||++++.++..+... .....+..++.+ +..+++..++.+.
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-----NWDDEFKEYVKQRKYTLITVEEYADI 192 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-----GCCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-----cchHHHHHHHhcCCCCCCCHHHHHHH
Confidence 7899999999999999888999999999999999999999988655411 111222333333 3457889999988
Q ss_pred HhcCCCcEEEEEEeccccHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHH----HHHHHHHHHHHHhcCcccEEEEEEEcC
Q 002928 773 MTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQSKIRALGFSEKFIRT----WEYYFDYCAAGFKSRTLGDYQIVFSRP 848 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~----w~~y~~~~~~~f~~~~~~~~~~~~~~~ 848 (864)
+++ +||++++++.++.+|..++..|.+++..+++++.+. +++...+. |+.|+..|.. |.+....++++||
T Consensus 193 l~~-~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----g~~~w~~~~~~Kp 266 (266)
T 3ujc_A 193 LTA-CNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEKKFISLDDGWSRKIKDSKR----KMQRWGYFKATKN 266 (266)
T ss_dssp HHH-TTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHT----TSEEEEEEEEECC
T ss_pred HHH-cCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHHHHHHHHHHHc----CcccceEEEEeCC
Confidence 887 999999999999999999999999999999998876 56655554 9999988874 6677888999997
No 23
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.92 E-value=4.6e-25 Score=254.73 Aligned_cols=276 Identities=15% Similarity=0.103 Sum_probs=171.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC-CeEEEEecCCCCCCcceeEee-CCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG-VEVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G-~~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
+||+|||||+|||+||+.|+++| ++|+|||+++++||++.|.+. +|+.+|.|+++++......+.+++.++|+.....
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~~~ 88 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRT 88 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHCCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCcce
Confidence 48999999999999999999999 999999999999999999987 8999999999997543445666666766522111
Q ss_pred cceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc---
Q 002928 79 DMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR--- 155 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~--- 155 (864)
.....++..+.+...... . .......+.....+..++.... .......++.++.+|+...
T Consensus 89 ----~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~s~~~~l~~~l~~ 151 (516)
T 1rsg_A 89 ----RFVFDDDNFIYIDEERGR--V----DHDKELLLEIVDNEMSKFAELE-------FHQHLGVSDCSFFQLVMKYLLQ 151 (516)
T ss_dssp ----CEECCCCCCEEEETTTEE--C----TTCTTTCHHHHHHHHHHHHHHH-------C-------CCBHHHHHHHHHHH
T ss_pred ----eEEECCCCEEEEcCCCcc--c----cccHHHHHHHHHHHHHHHHHHH-------hhhccCCCCCCHHHHHHHHHHH
Confidence 111223333222211000 0 0001111222222222221111 0111112457788776542
Q ss_pred ---CCCHHHHHHHHhhhh---hcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcC
Q 002928 156 ---GYSELFQKAYLVPVC---GSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLG 229 (864)
Q Consensus 156 ---~~~~~~~~~~~~p~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G 229 (864)
.+.+.. ..++.++. ...++.+.+++ ++... +.. ......++.| ++.+++.|++.+. +
T Consensus 152 ~~~~l~~~~-~~~~~~~~~~~~~~~g~~~~~~---s~~~~---~~~-------~~~~~~~~~g-~~~l~~~l~~~l~--~ 214 (516)
T 1rsg_A 152 RRQFLTNDQ-IRYLPQLCRYLELWHGLDWKLL---SAKDT---YFG-------HQGRNAFALN-YDSVVQRIAQSFP--Q 214 (516)
T ss_dssp HGGGSCHHH-HHHHHHHHGGGHHHHTBCTTTS---BHHHH---CCC-------CSSCCEEESC-HHHHHHHHHTTSC--G
T ss_pred hhcccCHHH-HHHHHHHHHHHHHHhCCChHHC---ChHHH---Hhh-------ccCcchhhhC-HHHHHHHHHHhCC--C
Confidence 112111 11111211 11223333332 22211 100 1122335677 9999999998885 3
Q ss_pred ceEEeCcceEEEEEe-CCeEEEEECCCcEEecCEEEEccChHHHHHh------------hcCCCChHHHHhhccCceee-
Q 002928 230 CQIKTGCEVRSVLQY-GEGRIEIRGDDFQRVYDGCIMAVHAPDALRM------------LGNQATFEEKRVLGAFQYVY- 295 (864)
Q Consensus 230 ~~I~~~~~V~~I~~~-~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~l------------l~~~~~~~~~~~l~~~~~~~- 295 (864)
++|++|++|++|+.. ++++.|++.+|++++||+||+|+|+..+... +.+.++....+.+..+.+..
T Consensus 215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~ 294 (516)
T 1rsg_A 215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGAL 294 (516)
T ss_dssp GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCC
T ss_pred CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcc
Confidence 689999999999986 5679999999988999999999999988632 12346778889999999887
Q ss_pred ceEEEecCCCCCCCC
Q 002928 296 SDIFLHRDKNFMPRN 310 (864)
Q Consensus 296 ~~~~l~~d~~~~p~~ 310 (864)
.++.+.++.++|+.+
T Consensus 295 ~Kv~l~f~~~fW~~~ 309 (516)
T 1rsg_A 295 GKVIFEFEECCWSNE 309 (516)
T ss_dssp EEEEEEESSCCSCCS
T ss_pred eEEEEEeCCCCCCCC
Confidence 688899999999764
No 24
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.92 E-value=2.3e-25 Score=255.99 Aligned_cols=287 Identities=15% Similarity=0.108 Sum_probs=171.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee-----------------CCeeeccceeeccCCCchH
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-----------------DGVDLDLCFMVFNRVTYPN 63 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~-----------------~G~~~d~G~~~~~~~~~~~ 63 (864)
+||+|||||++||+||++|+++|++|+|||+++++||++.|.+. +|..+|.|++.+.. .. .
T Consensus 12 ~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-~ 89 (489)
T 2jae_A 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ-SH-I 89 (489)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET-TS-T
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc-HH-H
Confidence 58999999999999999999999999999999999999998875 57788999988754 34 7
Q ss_pred HHHHHHHcCCCcccccce--eeEEe-cCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCC
Q 002928 64 MMEFFESLGVDMEISDMS--FSVSL-DKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNA 140 (864)
Q Consensus 64 ~~~l~~~lG~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (864)
+.++++++|++....... ..... .++. .+.+ .......... .+...+.++.+.. ... .......
T Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g--~~~~~~~~~~-----~~~~~~~~l~~~~---~~~-~~~~~~~ 156 (489)
T 2jae_A 90 TLDYCRELGVEIQGFGNQNANTFVNYQSDT--SLSG--QSVTYRAAKA-----DTFGYMSELLKKA---TDQ-GALDQVL 156 (489)
T ss_dssp HHHHHHHHTCCEEEECCCCTTSEEECCCSS--TTTT--CCEEHHHHHH-----HHHHHHHHHHHHH---HHH-TTTTTTS
T ss_pred HHHHHHHcCCceEEccccCCCceEEecCCc--ccCC--ccccHHHHhh-----hhhccHHHHHHHH---Hhc-ccccccc
Confidence 889999999976443211 01111 1100 0000 0000000000 0111111111110 000 0000000
Q ss_pred cCCCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCC------------hhhhhcCCHHHHHHHHhhcCCCccCCCCcEE
Q 002928 141 DIDRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCS------------SEKVMSCSAFSVLSFCRNHHALQIFGRPQWL 208 (864)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (864)
...++.++.+|+.+.+- ........+.....|..+ +.++...+...+..++.+. ........++
T Consensus 157 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 232 (489)
T 2jae_A 157 SREDKDALSEFLSDFGD--LSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFD--FGYDQAMMMF 232 (489)
T ss_dssp CHHHHHHHHHHHHHHTT--CCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGG--GCTTTSSSEE
T ss_pred chhhHHHHHHHHHHhhh--hhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhh--hccccCccEE
Confidence 00123467777765210 000000001111111111 1111111111111122211 1122345788
Q ss_pred EecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC---cEEecCEEEEccChHHHHHhhcCCCChHHH
Q 002928 209 TVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD---FQRVYDGCIMAVHAPDALRMLGNQATFEEK 285 (864)
Q Consensus 209 ~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G---~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~ 285 (864)
+++||++.++++|++.+.+ ++|++|++|++|++++++|.|++.+| ++++||+||+|+|+..+.++.. .+++...
T Consensus 233 ~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-~l~~~~~ 309 (489)
T 2jae_A 233 TPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRLQN-NLPGDVL 309 (489)
T ss_dssp EETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTSEE-CCCHHHH
T ss_pred eecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhCcc-CCCHHHH
Confidence 9999999999999999842 78999999999999999999988876 5799999999999998877665 4677778
Q ss_pred HhhccCceee-ceEEEecCCCCCCC
Q 002928 286 RVLGAFQYVY-SDIFLHRDKNFMPR 309 (864)
Q Consensus 286 ~~l~~~~~~~-~~~~l~~d~~~~p~ 309 (864)
+.+..+++.. .++.+.+++++|+.
T Consensus 310 ~~l~~~~~~~~~kv~l~~~~~~w~~ 334 (489)
T 2jae_A 310 TALKAAKPSSSGKLGIEYSRRWWET 334 (489)
T ss_dssp HHHHTEECCCEEEEEEEESSCHHHH
T ss_pred HHHHhCCCccceEEEEEeCCCCccC
Confidence 8888888877 57778888776643
No 25
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.92 E-value=1.1e-24 Score=239.24 Aligned_cols=353 Identities=12% Similarity=0.116 Sum_probs=223.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeec-cceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLD-LCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d-~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
+||+|||||++||++|++|+++|++|+|+|+++++||++.+...+|..++ .|+++++. .++.+.++++++|.......
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~l~~~~~~~~ 80 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT-NDKYIWDYVNDLVEFNRFTN 80 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE-SCHHHHHHHHTTSCBCCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecC-CCHHHHHHHHHhhhhhhccc
Confidence 48999999999999999999999999999999999999999999999985 99999864 46778889998885332222
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCH
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSE 159 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (864)
.. ....+|+.+.++.. ......++... .......++..........++.++++|+.+. +++
T Consensus 81 ~~--~~~~~g~~~~~p~~------~~~~~~l~~~~----------~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~-~g~ 141 (367)
T 1i8t_A 81 SP--LAIYKDKLFNLPFN------MNTFHQMWGVK----------DPQEAQNIINAQKKKYGDKVPENLEEQAISL-VGE 141 (367)
T ss_dssp CC--EEEETTEEEESSBS------HHHHHHHHCCC----------CHHHHHHHHHHHTTTTCCCCCCSHHHHHHHH-HHH
T ss_pred cc--eEEECCeEEEcCCC------HHHHHHHhccC----------CHHHHHHHHHHHhhccCCCCCccHHHHHHHH-HhH
Confidence 21 12234444443221 11111110000 0011111222221121223678999999988 788
Q ss_pred HHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEE-EecCChHHHHHHHHHHHhhcCceEEeCcce
Q 002928 160 LFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWL-TVRSRSRSYVDKVIELLESLGCQIKTGCEV 238 (864)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~La~~~~~~G~~I~~~~~V 238 (864)
.+.+.++.|++.+.|+.++++++...+.. +..............|. +++||+..++++|++ |++|++|++|
T Consensus 142 ~~~~~~~~p~~~~~~~~~~~~lsa~~~~~---l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V 213 (367)
T 1i8t_A 142 DLYQALIKGYTEKQWGRSAKELPAFIIKR---IPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDF 213 (367)
T ss_dssp HHHHHHTHHHHHHHHSSCGGGSCTTSSCC---CCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT-----TSEEECSCCG
T ss_pred HHHHHHHHHHHhhhhCCChHHcCHHHHhh---ceeeeccccccccchhhcccCCCHHHHHHHHhc-----CCEEEeCCce
Confidence 88999999999999999999996543310 00000000011134454 899999999999987 6899999999
Q ss_pred EEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeeceEEEe-cCCCCCCCCcCCcccc
Q 002928 239 RSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYSDIFLH-RDKNFMPRNPAAWSAW 317 (864)
Q Consensus 239 ~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~l~-~d~~~~p~~~~~~~~~ 317 (864)
++|.. +| ++.||+||+|+|++.+.++ .+..++|.+..++++ .|.+.+|. . .|
T Consensus 214 ~~i~~---~v--------~~~~D~VV~a~p~~~~~~~-----------~l~~l~y~s~~~v~~~~d~~~~~~--~---~~ 266 (367)
T 1i8t_A 214 LKDKD---SL--------ASKAHRIIYTGPIDQYFDY-----------RFGALEYRSLKFETERHEFPNFQG--N---AV 266 (367)
T ss_dssp GGSHH---HH--------HTTEEEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSSS--S---SE
T ss_pred eeech---hh--------hccCCEEEEeccHHHHHHH-----------hhCCCCCceEEEEEEEeccccCCC--C---eE
Confidence 98852 22 2469999999999876432 356788988665544 57665553 1 23
Q ss_pred eeccCCCC-ceEEEEeccccccCccCCCCeEEEcCCCCCCcceeeeEE----cCCCCCCHHHHHHHHhhhh-hcCCCCeE
Q 002928 318 NFLGSTGG-KVCLTYWLNVVQNIEETRLPFLVTLNPDHTPEHTLFKWS----TSHPVPSVAASKASLELDH-IQGKRGIW 391 (864)
Q Consensus 318 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~p~~~~~~~~~~w~----~~~p~~~~~~~~~~~~l~~-~~~~~~l~ 391 (864)
.++..++. -..++...+.... .. ...+...... ..|. ..+|+++.+....+..+.+ .+..+|++
T Consensus 267 ~~~~~~~~~~~ri~~~~~~~~~-~~--~~~~v~~e~~-------~~~~~~~~p~ypv~~~~~~~~~~~~~~~~~~~~~~~ 336 (367)
T 1i8t_A 267 INFTDANVPYTRIIEHKHFDYV-ET--KHTVVTKEYP-------LEWKVGDEPYYPVNDNKNMELFKKYRELASREDKVI 336 (367)
T ss_dssp EEECCTTSSCSEEEEGGGGSCC-CC--SCEEEEEEEE-------EECCTTSCCCEECCSHHHHHHHHHHHHHHHHCTTEE
T ss_pred EEeCCCCCceeeEEeecccCCC-CC--CCEEEEEEEe-------cccCCCCeeecccCChhHHHHHHHHHHHHhcCCCEE
Confidence 33322111 1122222111111 11 1122211110 1122 4688888888888877776 45568999
Q ss_pred EEecc--CCCCCChhhHhHHHHHHHHhcc
Q 002928 392 FCGAY--QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 392 ~aG~~--~g~G~~e~a~~sG~~aA~~ilg 418 (864)
|||.| .+++.+++|+.||+.+|+.++.
T Consensus 337 ~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 337 FGGRLAEYKYYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp ECSTTTTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred EcccceeeEecCHHHHHHHHHHHHHHHhc
Confidence 99985 3334449999999999999875
No 26
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.92 E-value=1.9e-24 Score=238.64 Aligned_cols=351 Identities=11% Similarity=0.080 Sum_probs=222.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee--CCeee-ccceeeccCCCchHHHHHHHHcCCCccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI--DGVDL-DLCFMVFNRVTYPNMMEFFESLGVDMEI 77 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~--~G~~~-d~G~~~~~~~~~~~~~~l~~~lG~~~~~ 77 (864)
+||+|||||++||++|+.|+++|++|+|+|+++++||++.|... .|+.+ +.|+++++. .++++.++++++|.....
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~l~~~~~~ 82 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT-DNETVWNYVNKHAEMMPY 82 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHHTTSCEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC-CCHHHHHHHHHHhhhccc
Confidence 58999999999999999999999999999999999999999988 78875 999999964 678899999999862211
Q ss_pred ccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCC
Q 002928 78 SDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGY 157 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (864)
.. . .....+|+.+.++.. ...+.......+.+. + ...++....... ..++.++++|+.+. +
T Consensus 83 ~~-~-~~~~~~g~~~~~P~~--~~~~~~l~~~~~~~~------~-------~~~~l~~~~~~~-~~~~~sl~e~~~~~-~ 143 (384)
T 2bi7_A 83 VN-R-VKATVNGQVFSLPIN--LHTINQFFSKTCSPD------E-------ARALIAEKGDST-IADPQTFEEEALRF-I 143 (384)
T ss_dssp CC-C-EEEEETTEEEEESCC--HHHHHHHTTCCCCHH------H-------HHHHHHHHSCCS-CSSCCBHHHHHHHH-H
T ss_pred cc-c-eEEEECCEEEECCCC--hhHHHHHhcccCCHH------H-------HHHHHHHhhhcc-CCCCcCHHHHHHHh-h
Confidence 11 1 112234444444321 000000000000111 0 011111111111 23678999999988 7
Q ss_pred CHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEE-EecCChHHHHHHHHHHHhhcCceEEeCc
Q 002928 158 SELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWL-TVRSRSRSYVDKVIELLESLGCQIKTGC 236 (864)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~La~~~~~~G~~I~~~~ 236 (864)
++.+.+.++.|++.+.|+.++++++...+. .+..............|. +++||+..++++|++. .|++|++|+
T Consensus 144 g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~---r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~---~g~~I~l~~ 217 (384)
T 2bi7_A 144 GKELYEAFFKGYTIKQWGMQPSELPASILK---RLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNH---ENIKVDLQR 217 (384)
T ss_dssp CHHHHHHHTHHHHHHHHSSCGGGSBGGGCC---SCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCS---TTEEEEESC
T ss_pred cHHHHHHHHHHHHHHHhCCCHHHhCHHHHh---ccccccccccccccccccEEECcCHHHHHHHHHhc---CCCEEEECC
Confidence 889999999999999999999998643321 000000000011123454 9999999999999974 388999999
Q ss_pred ceE-EEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeeceEE-EecCCCCCCCCcCCc
Q 002928 237 EVR-SVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYSDIF-LHRDKNFMPRNPAAW 314 (864)
Q Consensus 237 ~V~-~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~-l~~d~~~~p~~~~~~ 314 (864)
+|+ +|.. .||+||+|+|++.+.++ .+..++|....++ +..|..+.+
T Consensus 218 ~V~~~i~~---------------~~d~VI~a~p~~~~~~~-----------~lg~l~y~s~~~v~~~~d~~~~~------ 265 (384)
T 2bi7_A 218 EFIVEERT---------------HYDHVFYSGPLDAFYGY-----------QYGRLGYRTLDFKKFTYQGDYQG------ 265 (384)
T ss_dssp CCCGGGGG---------------GSSEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEEESCSSS------
T ss_pred eeehhhhc---------------cCCEEEEcCCHHHHHHh-----------hcCCCCcceEEEEEEEeCCCCCC------
Confidence 999 7742 39999999999977543 2457888886543 334522211
Q ss_pred ccc-eeccCCCCceEEEEeccccccCccCCCCeEEEcCCCCCCcceeeeEE----cCCCCCCHHHHHHHHhhhhhcCC-C
Q 002928 315 SAW-NFLGSTGGKVCLTYWLNVVQNIEETRLPFLVTLNPDHTPEHTLFKWS----TSHPVPSVAASKASLELDHIQGK-R 388 (864)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~p~~~~~~~~~~w~----~~~p~~~~~~~~~~~~l~~~~~~-~ 388 (864)
.+| +|......-..++...+....+.. ...+..+.. ...|. ..+|+++.++.+.+..+...... +
T Consensus 266 ~~~~n~~~~~~~~~ri~~~~~~~~~~~~--~~~~v~~e~-------~~~~~~~~~p~ypv~~~~~~~~~~~~~~~~~~~~ 336 (384)
T 2bi7_A 266 CAVMNYCSVDVPYTRITEHKYFSPWEQH--DGSVCYKEY-------SRACEENDIPYYPIRQMGEMALLEKYLSLAENET 336 (384)
T ss_dssp SSEEEECSTTSSSSEEEEGGGGCTTSCC--SEEEEEEEE-------EEECCTTCCCCEECCCHHHHHHHHHHHHHHTTCS
T ss_pred CEEEEecCCCCCeeeEEEeeccCCCCCC--CCEEEEEEE-------eccccCCCccccccCChhHHHHHHHHHHHHhcCC
Confidence 234 555211111122222211111111 111221111 11343 46889998999888888875554 8
Q ss_pred CeEEEeccC--CCCCChhhHhHHHHHHHHhcc
Q 002928 389 GIWFCGAYQ--GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 389 ~l~~aG~~~--g~G~~e~a~~sG~~aA~~ilg 418 (864)
||+|||.|. +++.+++|+.+|+.+|+.+++
T Consensus 337 ~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~ 368 (384)
T 2bi7_A 337 NITFVGRLGTYRYLDMDVTIAEALKTAEVYLN 368 (384)
T ss_dssp SEEECHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEccccEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 999999853 234449999999999999975
No 27
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.91 E-value=8.9e-24 Score=241.33 Aligned_cols=389 Identities=14% Similarity=0.166 Sum_probs=223.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCC-eEEEEecCCCCCCcceeEeeCCeeeccceeeccC---CCchHHHHHHHH-cCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNR---VTYPNMMEFFES-LGVDM 75 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~-~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~---~~~~~~~~l~~~-lG~~~ 75 (864)
+||+|||||++||++|+.|+++|+ +|+|+|+++++||++.+....|..+|.|+++++. .....+.+++++ +|+..
T Consensus 5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~ 84 (472)
T 1b37_A 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN 84 (472)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCce
Confidence 489999999999999999999998 8999999999999999999999999999999862 233457789999 89876
Q ss_pred ccccce---eeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHH--
Q 002928 76 EISDMS---FSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQ-- 150 (864)
Q Consensus 76 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 150 (864)
...... ..+...+|+.+. .+... ..........++... +.... .+...++.++.+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~----------~~~~~-----~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~s~~~~~ 144 (472)
T 1b37_A 85 FRSDFDYLAQNVYKEDGGVYD----------EDYVQ-----KRIELADSVEEMGEK---LSATL--HASGRDDMSILAMQ 144 (472)
T ss_dssp EECCCTTGGGCEECSSSSBCC----------HHHHH-----HHHHHHHHHHHHHHH---HHHTS--CTTCTTCCBHHHHH
T ss_pred eeccCccccceeEcCCCCCCC----------HHHHH-----HHHHHHHHHHHHHHH---HHHhh--ccccchhhhHHHHH
Confidence 432211 011111222111 00000 111111111111111 11111 111123445443
Q ss_pred HHHhcCC--CHHHHHHHHhhhhh-cccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEE-ecCChHHHHHHHHHHHh
Q 002928 151 FVETRGY--SELFQKAYLVPVCG-SIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLT-VRSRSRSYVDKVIELLE 226 (864)
Q Consensus 151 ~l~~~~~--~~~~~~~~~~p~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gG~~~l~~~La~~~~ 226 (864)
++..... .....+.++.++.. ..++.+.+.++.........+.. .+...++. +.||+..+++.|++.+.
T Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~~~gG~~~l~~~l~~~l~ 217 (472)
T 1b37_A 145 RLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSD-------FGDDVYFVADQRGYEAVVYYLAGQYL 217 (472)
T ss_dssp HHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHH-------HCSEEEEECCTTCTTHHHHHHHHTTS
T ss_pred HHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhccccccccc-------cCCceeeeecCCcHHHHHHHHHHhcc
Confidence 4444321 10111222333321 12333333332111100000000 11122322 47999999999999987
Q ss_pred hc--------CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhh---cCCCChHHHHhhccCceee
Q 002928 227 SL--------GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRML---GNQATFEEKRVLGAFQYVY 295 (864)
Q Consensus 227 ~~--------G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll---~~~~~~~~~~~l~~~~~~~ 295 (864)
+. |++|++|++|++|+..++++.|++.+|++++||+||+|+|+..+.+++ .+.++....+.+..+.+..
T Consensus 218 ~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~ 297 (472)
T 1b37_A 218 KTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAV 297 (472)
T ss_dssp CBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEEC
T ss_pred ccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcc
Confidence 65 689999999999999999999999999889999999999999887743 3456677778888888776
Q ss_pred -ceEEEecCCCCCCCCcC------------Ccccce-ecc-CCCCceEEEEecccc----cc-----CccCCCCeEEEcC
Q 002928 296 -SDIFLHRDKNFMPRNPA------------AWSAWN-FLG-STGGKVCLTYWLNVV----QN-----IEETRLPFLVTLN 351 (864)
Q Consensus 296 -~~~~l~~d~~~~p~~~~------------~~~~~~-~~~-~~~~~~~~~~~~~~~----~~-----l~~~~~~~~~~l~ 351 (864)
.++.+.++.++|+.+.. ....|. +.. .+....++.+..... .. +.+.+.+.+.+++
T Consensus 298 ~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~ 377 (472)
T 1b37_A 298 YTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF 377 (472)
T ss_dssp EEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred eeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 57888899888875311 001111 111 123333333222110 11 1111222334455
Q ss_pred CCCC---Ccc-eeeeEE------cCCCCCCHHHHH-HHHhhhhhcCCCCeEEEeccCC---CCCChhhHhHHHHHHHHhc
Q 002928 352 PDHT---PEH-TLFKWS------TSHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMIAAHGML 417 (864)
Q Consensus 352 p~~~---~~~-~~~~w~------~~~p~~~~~~~~-~~~~l~~~~~~~~l~~aG~~~g---~G~~e~a~~sG~~aA~~il 417 (864)
|... +.. .+.+|. ..++.+.++... ..+.+ .++.++|||||+++. .|..++|+.||+++|+.|+
T Consensus 378 Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l--~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~ 455 (472)
T 1b37_A 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL--RAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 455 (472)
T ss_dssp TTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHH--HCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHH--hccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHH
Confidence 4321 111 334563 122333333222 12222 356789999999753 4455999999999999997
Q ss_pred c
Q 002928 418 G 418 (864)
Q Consensus 418 g 418 (864)
.
T Consensus 456 ~ 456 (472)
T 1b37_A 456 N 456 (472)
T ss_dssp H
T ss_pred H
Confidence 5
No 28
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.91 E-value=4.2e-25 Score=245.66 Aligned_cols=359 Identities=9% Similarity=0.064 Sum_probs=217.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhC-CCeEEEEecCCCCCCcceeEee--CCeee-ccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA-GVEVVLYEKEDSLGGHAKTVTI--DGVDL-DLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~-G~~V~vlEa~~~~GG~~~s~~~--~G~~~-d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
+||+|||||++||+||++|+++ |++|+|+|+++++||++.|... +|+.+ +.|+++++. .++.+.++++++|+...
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~~g~~~~ 86 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT-SNKRVWDYVRQFTDFTD 86 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHTTTCCBCC
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC-CcHHHHHHHHHhhhhhc
Confidence 4899999999999999999999 9999999999999999999988 68877 599999863 57889999999987321
Q ss_pred cccceeeEEecCCCceeecCCCCCCchhhhhhhc-CChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhc
Q 002928 77 ISDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNL-LNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETR 155 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (864)
... ......+|+.+.++.. .. .+...... +.+...+ ..+..........++.++++|+.+.
T Consensus 87 ~~~--~~~~~~~G~~~~~p~~--~~-~~~~l~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~s~~e~l~~~ 148 (399)
T 1v0j_A 87 YRH--RVFAMHNGQAYQFPMG--LG-LVSQFFGKYFTPEQAR-------------QLIAEQAAEIDTADAQNLEEKAISL 148 (399)
T ss_dssp CCC--CEEEEETTEEEEESSS--HH-HHHHHHTSCCCHHHHH-------------HHHHHHGGGSCTTC----CCHHHHH
T ss_pred ccc--ceEEEECCEEEeCCCC--HH-HHHHHhcccCCHHHHH-------------HHHHHHhhccCCCCcccHHHHHHHH
Confidence 111 1122244554444321 00 00000000 0111110 0111111111123567899999985
Q ss_pred CCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEE-EecCChHHHHHHHHHHHhhcCceEEe
Q 002928 156 GYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWL-TVRSRSRSYVDKVIELLESLGCQIKT 234 (864)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~La~~~~~~G~~I~~ 234 (864)
+++.+.+.++.|++.+.|+.++++++...+. .+..............+. +++||+..++++|++.+ |++|++
T Consensus 149 -~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~---~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~---g~~I~l 221 (399)
T 1v0j_A 149 -IGRPLYEAFVKGYTAKQWQTDPKELPAANIT---RLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADH---RIEVRL 221 (399)
T ss_dssp -HCHHHHHHHTHHHHHHHHTSCGGGSCGGGCS---CCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCST---TEEEEC
T ss_pred -HhHHHHHHHHHHHHHhhcCCChhhcChHhhh---cceeEeccccchhhhhhcccccccHHHHHHHHHhcC---CeEEEE
Confidence 7888889999999999999999988543221 000000000011122453 89999999999999844 889999
Q ss_pred CcceEEEEEeCCeEEEEECCCcEE-ecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeec-eEEEecCCCCCCCCcC
Q 002928 235 GCEVRSVLQYGEGRIEIRGDDFQR-VYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYS-DIFLHRDKNFMPRNPA 312 (864)
Q Consensus 235 ~~~V~~I~~~~~~~~V~~~~G~~~-~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~-~~~l~~d~~~~p~~~~ 312 (864)
|++|++|+.. | + ++ +||+||+|+|+..+.++ .+..++|.+. .+.+..+.+..+ .
T Consensus 222 ~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~-----------~l~~l~y~s~~~~~~~~~~~~~~---~ 277 (399)
T 1v0j_A 222 NTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY-----------AEGRLGWRTLDFEVEVLPIGDFQ---G 277 (399)
T ss_dssp SCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSS---S
T ss_pred CCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh-----------hhCCCCcceEEEEEEEEccccCC---C
Confidence 9999999642 2 1 35 79999999999876543 3457788763 333344543221 1
Q ss_pred CcccceeccCCCCceEEEEeccccccCc-cCCCCeEEEcCCCCCCcceeeeEE----cCCCCCCHHHHHHHHhhhhhc-C
Q 002928 313 AWSAWNFLGSTGGKVCLTYWLNVVQNIE-ETRLPFLVTLNPDHTPEHTLFKWS----TSHPVPSVAASKASLELDHIQ-G 386 (864)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l~p~~~~~~~~~~w~----~~~p~~~~~~~~~~~~l~~~~-~ 386 (864)
.+ .++|.........++.+.+...... .. ...+...... ..|. ..+|.++.++...+..+.... .
T Consensus 278 ~~-~~~~~~~~~~~~ri~~~~~~~~~~~~~~-~~~~v~~e~~-------~~~~~~~~~~ypv~~~~~~~~~~~~~~~~~~ 348 (399)
T 1v0j_A 278 TA-VMNYNDLDVPYTRIHEFRHFHPERDYPT-DKTVIMREYS-------RFAEDDDEPYYPINTEADRALLATYRARAKS 348 (399)
T ss_dssp SS-EEEECCTTSSCSEEEEGGGGCTTSCCCS-SCEEEEEEEE-------EECCTTSCCCEECCCHHHHHHHHHHHHHHHH
T ss_pred Ce-EEEeCCCCCCcceeEeecCCCCCCcCCC-CCeEEEEeec-------ccccCCCccccccCcHHHHHHHHHHHHHHHh
Confidence 11 2444421111122344433222221 11 1122221111 1232 357888888887777766633 2
Q ss_pred C---CCeEEEecc--CCCCCChhhHhHHHHHHHHhcc
Q 002928 387 K---RGIWFCGAY--QGYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 387 ~---~~l~~aG~~--~g~G~~e~a~~sG~~aA~~ilg 418 (864)
. +||+|||+| .+++.+++|+.||.++|+.|..
T Consensus 349 ~~~~~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~ 385 (399)
T 1v0j_A 349 ETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLA 385 (399)
T ss_dssp HHHHHCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHH
T ss_pred ccccCCEEEccceEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3 799999985 3334459999999999999864
No 29
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.90 E-value=4.9e-24 Score=225.33 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC--CEEEEEeCCHH------HHHHHHHHHHHcCCC
Q 002928 607 HEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG--CKYTGITLSEE------QLKYAEMKVKEAGLQ 678 (864)
Q Consensus 607 ~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~------~~~~a~~~~~~~~l~ 678 (864)
..+++.+|.++...+++.+.++++.+|||||||+|.++..+++..+ ++|+|+|+|++ +++.|++++...++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~ 100 (275)
T 3bkx_A 21 ARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred chHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence 3578899999999999999999999999999999999999999733 89999999997 999999999988887
Q ss_pred CCeEEEEcc-c--CCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccc-hh
Q 002928 679 DHIRLYLCD-Y--RQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPG-FI 753 (864)
Q Consensus 679 ~~v~~~~~d-~--~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~-~~ 753 (864)
++++++++| + ..++ ++++||+|++..+++|+++ ...+++.+.++++|||++++.++..+............ +.
T Consensus 101 ~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
T 3bkx_A 101 DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMI 178 (275)
T ss_dssp GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHH
T ss_pred CceEEEECChhhhccCCCCCCCEEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHH
Confidence 789999998 4 3344 5689999999999999954 56688888888888999999988765542211110000 11
Q ss_pred hhcc---c---CC--CCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHH--HHHHHHHHhHHH-HHh-hcCCHHHHHH
Q 002928 754 KEYI---F---PG--GCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLR--CWRKNFLEKQSK-IRA-LGFSEKFIRT 821 (864)
Q Consensus 754 ~~~i---~---p~--~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~--~w~~~~~~~~~~-~~~-~g~~~~~~r~ 821 (864)
+... . +. ..+++..++.+.+++ +||++++++.+ |.+++. .|...+.....+ +.. .||++.|+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~-aGf~~~~~~~~---~~~~~~~~~W~~~~~~~~~~~~~~~~g~~~~~~~~ 254 (275)
T 3bkx_A 179 QGLLYAIAPSDVANIRTLITPDTLAQIAHD-NTWTYTAGTIV---EDPTLDDAHWEIATTNALLTELKLSTDLRDRVKPL 254 (275)
T ss_dssp HHHHHHHSCCTTCSCCCCCCHHHHHHHHHH-HTCEEEECCCB---CCTTCTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCCHHHHHHHHHH-CCCeeEEEEEe---cCCCCCCchhhHHHHHHHHHHHHhhccccHHHHHH
Confidence 1111 0 11 247899999988886 89999988876 556666 898866554443 233 5789999999
Q ss_pred HHHHHHHHHHHHhcCcccEEEEEEE
Q 002928 822 WEYYFDYCAAGFKSRTLGDYQIVFS 846 (864)
Q Consensus 822 w~~y~~~~~~~f~~~~~~~~~~~~~ 846 (864)
|.. +|++| .+.++++|++++
T Consensus 255 ~~~---~~~~g--~~~~~~~~~~~~ 274 (275)
T 3bkx_A 255 LEA---MSHNG--TASLATFTGRIT 274 (275)
T ss_dssp HHH---HTTSC--CCCCCEEEEEEE
T ss_pred HHH---HHhcc--ccccceeeEEEe
Confidence 998 56655 668999999875
No 30
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.90 E-value=2.4e-23 Score=218.84 Aligned_cols=210 Identities=15% Similarity=0.177 Sum_probs=167.5
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
.....+++.+. ++++.+|||||||+|.++..+++.++++|+|+|+|+.+++.|+++++..+++++++++++|+.+++ +
T Consensus 32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (267)
T 3kkz_A 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR 111 (267)
T ss_dssp HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence 33455666665 788999999999999999999998667999999999999999999999999888999999999988 6
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchh-hhcccCCCCCCCHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFI-KEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~i~p~~~~~~~~~~~~~ 772 (864)
+++||+|++..+++|+ ++..+++++.++|||||++++.+++....... .....++ .. +| .+++..++.+.
T Consensus 112 ~~~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~--~~--~~~~~~~~~~~ 182 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERP--AEINDFWMDA--YP--EIDTIPNQVAK 182 (267)
T ss_dssp TTCEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH--CT--TCEEHHHHHHH
T ss_pred CCCEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCCh--HHHHHHHHHh--CC--CCCCHHHHHHH
Confidence 7899999999999999 46899999999999999999998764322111 1111222 22 22 56789999988
Q ss_pred HhcCCCcEEEEEEecc-----ccHHHHHHHHHHHHHHh---HHHHHhh-cCCHHHHHHHHHHHHHHHHHHhc
Q 002928 773 MTSSSRLCVEDLENIG-----IHYYQTLRCWRKNFLEK---QSKIRAL-GFSEKFIRTWEYYFDYCAAGFKS 835 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~-----~~y~~tl~~w~~~~~~~---~~~~~~~-g~~~~~~r~w~~y~~~~~~~f~~ 835 (864)
+.+ +||++++++.++ .+|..++..|.+++... .+++.++ .......++|+.|+.+|+.+|..
T Consensus 183 l~~-aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~f~~ 253 (267)
T 3kkz_A 183 IHK-AGYLPVATFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKEYYGYTFFI 253 (267)
T ss_dssp HHH-TTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred HHH-CCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccccCeEeeh
Confidence 887 999999999887 68999999999998653 2233332 22345579999999888777754
No 31
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.90 E-value=1.3e-22 Score=233.68 Aligned_cols=396 Identities=14% Similarity=0.120 Sum_probs=221.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe--eCCeeeccceeeccCCCchHHHHHHHHcCCCcccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT--IDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEIS 78 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~--~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~ 78 (864)
+||+|||||++||+||+.|+++|++|+|||+++++||++.+.. ..|+.+|.|+++++ .....+.++++++|+.....
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~g~~~~~~ 112 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLP-EKHRIVREYIRKFDLRLNEF 112 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEE-TTCHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCccccc-chHHHHHHHHHHhCCCceee
Confidence 4899999999999999999999999999999999999999988 46899999999885 34667889999999875322
Q ss_pred cce--eeEEecCCCceeec----CCCCCCchhhhhhhcCChHHHHHHHHH-HhHHHHHHHH-HHhhccCCcCCCCccHHH
Q 002928 79 DMS--FSVSLDKGQGCEWS----SRNGMSGLFAQKKNLLNPYFWQMLREI-IKFNDDVLSY-LEDLENNADIDRNETLGQ 150 (864)
Q Consensus 79 ~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~s~~~ 150 (864)
... .......+...... ....+...+........ ....+... .++....... .... ....+..++.+
T Consensus 113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~ 187 (498)
T 2iid_A 113 SQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKS--AGQLYEESLGKVVEELKRTNCSYI---LNKYDTYSTKE 187 (498)
T ss_dssp CSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCC--HHHHHHHHTHHHHHHHHHSCHHHH---HHHHTTSBHHH
T ss_pred cccCCccEEEeCCeeecccccccCccccccCCCccccCCC--HHHHHHHHHHHHHHHHhhccHHHH---HHHhhhhhHHH
Confidence 110 00011112111000 00000000000000000 00111110 0000000000 0000 00014577889
Q ss_pred HHHhcC-CCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcC
Q 002928 151 FVETRG-YSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLG 229 (864)
Q Consensus 151 ~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G 229 (864)
|+...+ .+......+ ..+....... ..+....+..... ......++.+.||+..++++|++.+.+
T Consensus 188 ~l~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~gG~~~l~~~l~~~l~~-- 253 (498)
T 2iid_A 188 YLIKEGDLSPGAVDMI-GDLLNEDSGY------YVSFIESLKHDDI-----FAYEKRFDEIVDGMDKLPTAMYRDIQD-- 253 (498)
T ss_dssp HHHHTSCCCHHHHHHH-HHHTTCGGGT------TSBHHHHHHHHHH-----HTTCCCEEEETTCTTHHHHHHHHHTGG--
T ss_pred HHHHccCCCHHHHHHH-HHhcCcccch------hHHHHHHHHHHhc-----cccCcceEEeCCcHHHHHHHHHHhccc--
Confidence 988865 344433221 1111110000 0011111110000 012346778999999999999999853
Q ss_pred ceEEeCcceEEEEEeCCeEEEEECCCc----EEecCEEEEccChHHHHHhh-cCCCChHHHHhhccCceee-ceEEEecC
Q 002928 230 CQIKTGCEVRSVLQYGEGRIEIRGDDF----QRVYDGCIMAVHAPDALRML-GNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 230 ~~I~~~~~V~~I~~~~~~~~V~~~~G~----~~~ad~VV~A~~~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
+|++|++|++|+.++++|.|++.+|+ +++||+||+|+|...+.++. .+.+++...+.+..+++.. .++.+.++
T Consensus 254 -~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~ 332 (498)
T 2iid_A 254 -KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCT 332 (498)
T ss_dssp -GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEES
T ss_pred -ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEEeC
Confidence 89999999999999889999887764 48999999999999776653 3457777888888888887 67888888
Q ss_pred CCCCCCCcC--C--cc----cceecc---CCCCceEE-EEeccccc----cCc-----cCCCCeEEEcCCCCCC------
Q 002928 304 KNFMPRNPA--A--WS----AWNFLG---STGGKVCL-TYWLNVVQ----NIE-----ETRLPFLVTLNPDHTP------ 356 (864)
Q Consensus 304 ~~~~p~~~~--~--~~----~~~~~~---~~~~~~~~-~~~~~~~~----~l~-----~~~~~~~~~l~p~~~~------ 356 (864)
.++|+.... . +. .+.++. .|++..++ .+...... .+. +.+.+.+.++++...+
T Consensus 333 ~~~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~ 412 (498)
T 2iid_A 333 TKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFC 412 (498)
T ss_dssp SCGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHE
T ss_pred CCCccCCCccCCcccCCCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhhhhhc
Confidence 888765311 0 00 011111 13333333 33222110 111 1111122233331111
Q ss_pred -cceeeeEEc------CCCCCCHHHHHH-HHhhhhhcCCCCeEEEeccC--CCCCChhhHhHHHHHHHHhccc
Q 002928 357 -EHTLFKWST------SHPVPSVAASKA-SLELDHIQGKRGIWFCGAYQ--GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 357 -~~~~~~w~~------~~p~~~~~~~~~-~~~l~~~~~~~~l~~aG~~~--g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
...+.+|.. .+..+.++.... ...+ .++.++|||||+++ .+|++++|+.||+++|++|+..
T Consensus 413 ~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l--~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~ 483 (498)
T 2iid_A 413 YPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPL--TASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA 483 (498)
T ss_dssp EEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHH--HCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEecCCCCCCCceeeecCCcchHHHHHHH--hCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 124456663 112223333222 1122 24578999999975 3566699999999999999763
No 32
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.89 E-value=1.3e-22 Score=240.82 Aligned_cols=382 Identities=14% Similarity=0.138 Sum_probs=216.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEee-CCeeeccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
+||+|||||++||+||+.|+++|++|+|+|+++++||++.|... +|..+|.|+++++......+..+.+++|++.....
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~ 416 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFG 416 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcccccc
Confidence 48999999999999999999999999999999999999999876 58999999999976666667789999999765443
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHH-------
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFV------- 152 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l------- 152 (864)
.........+.. ..+......... ...................+.++.+++
T Consensus 417 ~~~~l~~~~g~~-------------------~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~~~ 474 (776)
T 4gut_A 417 ERCDLIQEGGRI-------------------TDPTIDKRMDFH---FNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAF 474 (776)
T ss_dssp SCCCEECTTSCB-------------------CCHHHHHHHHHH---HHHHHHHHHHHGGGCCGGGCCBHHHHHHHHHHHH
T ss_pred cccceEccCCcc-------------------cchhHHHHHHHH---HHHHHHHHHHHhhcccccccccHHHHHHHHHHHH
Confidence 322222121111 011111111111 111111111111111111233433332
Q ss_pred -HhcCCCHHHHH----HHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhh
Q 002928 153 -ETRGYSELFQK----AYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLES 227 (864)
Q Consensus 153 -~~~~~~~~~~~----~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~ 227 (864)
...+......+ .+..+......+.....++. .. +....... ...+....+.+|+..++++|++
T Consensus 475 l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~---~~----~~~~~~~~-~~~G~~~~~~~G~~~l~~aLa~---- 542 (776)
T 4gut_A 475 IKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSA---RS----WDHNEFFA-QFAGDHTLLTPGYSVIIEKLAE---- 542 (776)
T ss_dssp HHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBT---TT----TTGGGGSC-CCCSCEEECTTCTHHHHHHHHT----
T ss_pred HHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcCh---hh----hhhhhhHH-hcCCCeEEECChHHHHHHHHHh----
Confidence 22222100000 00001011111111111100 00 00000000 1124556788999999998875
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHh---hcCCCChHHHHhhccCceee-ceEEEecC
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRM---LGNQATFEEKRVLGAFQYVY-SDIFLHRD 303 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~~~l~~d 303 (864)
|++|++|++|++|+.++++|+|++.+|++++||+||+|+|+..+.+. +.+.++....+.+..+++.. .++.+.++
T Consensus 543 -gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~ 621 (776)
T 4gut_A 543 -GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFP 621 (776)
T ss_dssp -TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECS
T ss_pred -CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecC
Confidence 67999999999999988899999999988999999999999988651 33456777788888888877 68889999
Q ss_pred CCCCCCC---cCCcc------------cceeccCCCC--ceEEEEecccc----ccCc-----cCCCCeEEEcCCCC-C-
Q 002928 304 KNFMPRN---PAAWS------------AWNFLGSTGG--KVCLTYWLNVV----QNIE-----ETRLPFLVTLNPDH-T- 355 (864)
Q Consensus 304 ~~~~p~~---~~~~~------------~~~~~~~~~~--~~~~~~~~~~~----~~l~-----~~~~~~~~~l~p~~-~- 355 (864)
.++|+.. ...+. ...|...+.+ ..++.+..+.. ..+. +.....+.++++.. .
T Consensus 622 ~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~ 701 (776)
T 4gut_A 622 YRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 701 (776)
T ss_dssp SCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cccccccCCCCceEEeecCCcCCCceEEEEecCCCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCccccc
Confidence 9888642 11110 0111112332 24444443311 1111 11112233344321 1
Q ss_pred -Cc-ceeeeEEc------CCCCCCHHH-HHHHHhhhhhcCCCCeEEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 356 -PE-HTLFKWST------SHPVPSVAA-SKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 356 -~~-~~~~~w~~------~~p~~~~~~-~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
+. ..+.+|.. .+..+.++. ......+.. +..++|+|||+++ +.|++++|+.||.++|++|++
T Consensus 702 ~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~-p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 702 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAE-DIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp CCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHC-CBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred CcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhC-cCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 22 24556763 111111111 111222222 2257899999975 356669999999999999975
No 33
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.88 E-value=2e-21 Score=231.98 Aligned_cols=210 Identities=16% Similarity=0.120 Sum_probs=132.5
Q ss_pred CcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC------CcEEecCEEEEccChHHHHHh---
Q 002928 205 PQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD------DFQRVYDGCIMAVHAPDALRM--- 275 (864)
Q Consensus 205 ~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~------G~~~~ad~VV~A~~~~~~~~l--- 275 (864)
+.++.++||++.++++|++. .+|++|++|++|++.+++|.|++.+ |++++||+||+|+|...+.++
T Consensus 562 g~~~~~~gG~~~L~~aLa~~-----l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~ 636 (852)
T 2xag_A 562 GSHLTVRNGYSCVPVALAEG-----LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 636 (852)
T ss_dssp SCCEEETTCTTHHHHHHTTT-----CCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred CceEEecCcHHHHHHHHHhC-----CCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcc
Confidence 45678999999999999874 4799999999999999999998765 567999999999999998863
Q ss_pred --hcCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcCCccc-----------ceeccCCCCceEEEEeccccc----
Q 002928 276 --LGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPAAWSA-----------WNFLGSTGGKVCLTYWLNVVQ---- 337 (864)
Q Consensus 276 --l~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 337 (864)
+.+.++....+.+..+++.. .++.|.++.++|+.+...+.. ..+........++.+..+...
T Consensus 637 I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~~~pvLl~~v~G~~a~~l~ 716 (852)
T 2xag_A 637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIME 716 (852)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECSSSSEEEEEECHHHHHHGG
T ss_pred cccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCCCCCEEEEEecCcCHHHHh
Confidence 33456777788888999877 688899999998753221110 011111122344433322111
Q ss_pred cCc-----cCCCCeEEEcCCCC---CCcc-eeeeEEc------CCCCCCHHHHH-HHHhhhh-----------hcCCCCe
Q 002928 338 NIE-----ETRLPFLVTLNPDH---TPEH-TLFKWST------SHPVPSVAASK-ASLELDH-----------IQGKRGI 390 (864)
Q Consensus 338 ~l~-----~~~~~~~~~l~p~~---~~~~-~~~~w~~------~~p~~~~~~~~-~~~~l~~-----------~~~~~~l 390 (864)
.+. +.+...+.++++.. .+.. .+.+|.. .+..+.++... ....+.. ..+.++|
T Consensus 717 ~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL 796 (852)
T 2xag_A 717 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 796 (852)
T ss_dssp GSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCE
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcE
Confidence 111 11111223333221 1222 4557764 22222333211 1112221 1234799
Q ss_pred EEEeccC---CCCCChhhHhHHHHHHHHhccc
Q 002928 391 WFCGAYQ---GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 391 ~~aG~~~---g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
||||+++ +.|++++|+.||.++|+.|+..
T Consensus 797 ~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~ 828 (852)
T 2xag_A 797 FFAGEHTIRNYPATVHGALLSGLREAGRIADQ 828 (852)
T ss_dssp EECSGGGCTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEehhHhCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999974 4677799999999999999753
No 34
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.87 E-value=3e-21 Score=228.25 Aligned_cols=209 Identities=16% Similarity=0.136 Sum_probs=131.9
Q ss_pred CcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC------CcEEecCEEEEccChHHHHHh---
Q 002928 205 PQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD------DFQRVYDGCIMAVHAPDALRM--- 275 (864)
Q Consensus 205 ~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~------G~~~~ad~VV~A~~~~~~~~l--- 275 (864)
+.++.++||++.++++|++ +.+|++|++|++|++.+++|.|++.+ |++++||+||+|+|+..+.++
T Consensus 391 g~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~ 465 (662)
T 2z3y_A 391 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 465 (662)
T ss_dssp SCCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred CceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCc
Confidence 4567999999999999987 45899999999999999999998866 567999999999999998763
Q ss_pred --hcCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcCCccc-----------ceeccCCCCceEEEEeccccc----
Q 002928 276 --LGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPAAWSA-----------WNFLGSTGGKVCLTYWLNVVQ---- 337 (864)
Q Consensus 276 --l~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 337 (864)
+.+.+|....+++..+++.. .++.|.++.++|+.+...+.. ..+........++.+..+...
T Consensus 466 i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~ 545 (662)
T 2z3y_A 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIME 545 (662)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCSSSSEEEEEECTHHHHHHT
T ss_pred eEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCCCCCEEEEEeccHhHHHHH
Confidence 33456777788889999887 688899999999764221111 011111122333333322111
Q ss_pred cCc-----cCCCCeEEEcCCCC---CCcc-eeeeEEc------CCCCCCHHHHH-HHHhhhh-----------hcCCCCe
Q 002928 338 NIE-----ETRLPFLVTLNPDH---TPEH-TLFKWST------SHPVPSVAASK-ASLELDH-----------IQGKRGI 390 (864)
Q Consensus 338 ~l~-----~~~~~~~~~l~p~~---~~~~-~~~~w~~------~~p~~~~~~~~-~~~~l~~-----------~~~~~~l 390 (864)
.+. +.....+.++++.. .+.. .+.+|.. .++.+.++... ....+.. .++.++|
T Consensus 546 ~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl 625 (662)
T 2z3y_A 546 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625 (662)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCE
T ss_pred hCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcE
Confidence 111 01111223333221 1222 4557763 22222332211 1111111 1234799
Q ss_pred EEEeccC---CCCCChhhHhHHHHHHHHhcc
Q 002928 391 WFCGAYQ---GYGFHEDGLKAGMIAAHGMLG 418 (864)
Q Consensus 391 ~~aG~~~---g~G~~e~a~~sG~~aA~~ilg 418 (864)
||||+++ ..|++++|+.||.++|++|+.
T Consensus 626 ~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~ 656 (662)
T 2z3y_A 626 FFAGEHTIRNYPATVHGALLSGLREAGRIAD 656 (662)
T ss_dssp EECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999974 457779999999999999864
No 35
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=216.96 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=135.1
Q ss_pred cEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcC---CCCh
Q 002928 206 QWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGN---QATF 282 (864)
Q Consensus 206 ~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~---~~~~ 282 (864)
.++...+|+..+++.|++.+ |++|+++++|++|++++++|+|++.+|++++||.||+|+|++.+.++++. .+++
T Consensus 103 ~~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~ 179 (342)
T 3qj4_A 103 CNFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISE 179 (342)
T ss_dssp EEEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCH
T ss_pred cceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCH
Confidence 45678899999999999988 89999999999999999999999999877899999999999999888863 2344
Q ss_pred HHHHhhccCceee-ceEEEecCCCCCCCCc---CCc-----ccceecc--CC-----CCceEEEEeccc-----ccc---
Q 002928 283 EEKRVLGAFQYVY-SDIFLHRDKNFMPRNP---AAW-----SAWNFLG--ST-----GGKVCLTYWLNV-----VQN--- 338 (864)
Q Consensus 283 ~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~---~~~-----~~~~~~~--~~-----~~~~~~~~~~~~-----~~~--- 338 (864)
...+.+..++|.+ .++.+.++.+++...+ ... -.|.+.. .+ ++..++...... ...
T Consensus 180 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (342)
T 3qj4_A 180 CQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSI 259 (342)
T ss_dssp HHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCH
T ss_pred HHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCH
Confidence 5678889999988 5678888865332110 000 0122211 11 122233222221 001
Q ss_pred --CccCCCCeEEEcCCC-CCCcc-eeeeEEcCCCCCCHHHHHHHHhhhhh--cCCCCeEEEecc-CCCCCChhhHhHHHH
Q 002928 339 --IEETRLPFLVTLNPD-HTPEH-TLFKWSTSHPVPSVAASKASLELDHI--QGKRGIWFCGAY-QGYGFHEDGLKAGMI 411 (864)
Q Consensus 339 --l~~~~~~~~~~l~p~-~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~~--~~~~~l~~aG~~-~g~G~~e~a~~sG~~ 411 (864)
+.+.+...+.++.+. ..|.. .+++|.+++|.+... ..+... ...++|++||+| .|.|+ |+|+.||+.
T Consensus 260 ~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~-----~~~~~~~~~~~~~l~laGd~~~g~~v-~~ai~sg~~ 333 (342)
T 3qj4_A 260 EDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAA-----NCPGQMTLHHKPFLACGGDGFTQSNF-DGCITSALC 333 (342)
T ss_dssp HHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCS-----SSCSCEEEETTTEEEECSGGGSCSSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCceeeeccccccccccccC-----CCcceeEecCCccEEEEccccCCCCc-cHHHHHHHH
Confidence 111111112223321 12333 678999999988641 011121 356899999996 57777 999999999
Q ss_pred HHHHhcc
Q 002928 412 AAHGMLG 418 (864)
Q Consensus 412 aA~~ilg 418 (864)
+|+.|+.
T Consensus 334 aa~~i~~ 340 (342)
T 3qj4_A 334 VLEALKN 340 (342)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999975
No 36
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.86 E-value=6.2e-25 Score=236.30 Aligned_cols=236 Identities=16% Similarity=0.152 Sum_probs=177.9
Q ss_pred hhcCCCCcccccccCCCCCCHHHH---HH----HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeC
Q 002928 590 LFLDKSMLYSCAIFKSEHEDLEVA---QM----RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITL 660 (864)
Q Consensus 590 ~~~~~~~~ys~~~~~~~~~~l~~a---q~----~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~ 660 (864)
.|+++.+.|+++|+.....+++.+ |. .+.+.+++.+.++++.+|||||||+|.++..+++. . +.+|+|+|+
T Consensus 29 ~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 108 (317)
T 1dl5_A 29 EFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 108 (317)
T ss_dssp GGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES
T ss_pred HhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEEC
Confidence 467888888888876554234444 33 67788999999999999999999999999999987 3 357999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 661 SEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 661 s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
|+++++.|+++++..+++ +++++++|+.+.+ .+++||+|++..+++|++ +++.++|||||+++++.....
T Consensus 109 s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~~ 179 (317)
T 1dl5_A 109 SRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLKL 179 (317)
T ss_dssp CHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBGG
T ss_pred CHHHHHHHHHHHHHcCCC-CeEEEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCCC
Confidence 999999999999998886 5999999998865 467899999999999995 468899999999999865442
Q ss_pred --Ccccccc-cCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHH-HHHHhHHHHHhhcCC
Q 002928 740 --DQCYDEH-RLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRK-NFLEKQSKIRALGFS 815 (864)
Q Consensus 740 --~~~~~~~-~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~-~~~~~~~~~~~~g~~ 815 (864)
......+ .....|..++++|++.+|....+...+++ . +.. +.. ..|..|++.|+. +|.+.++.. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~-~-~~~--~~~--~~y~~tl~~~~~~~f~~~~~~~-----~ 248 (317)
T 1dl5_A 180 SRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLLER-N-RKL--LRE--FPFNREILLVRSHIFVELVDLL-----T 248 (317)
T ss_dssp GTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCHHHH-H-HTT--CCC--CCEEEEEECTTHHHHHHHHHHH-----H
T ss_pred cccceEEEEEEeCCcEEEEEeccEEEEEccCcccccccc-c-hhh--hhc--ccchhhccCcchhhhhhhhhhh-----c
Confidence 1111111 12346888999999999987665444443 1 111 111 227788889998 998877764 3
Q ss_pred HHHHHHHH-HHHHHHHH--HHhcCcccEEEEEEEcC
Q 002928 816 EKFIRTWE-YYFDYCAA--GFKSRTLGDYQIVFSRP 848 (864)
Q Consensus 816 ~~~~r~w~-~y~~~~~~--~f~~~~~~~~~~~~~~~ 848 (864)
+.+.++|+ +||.+|++ +|+.|.+.+ ...||
T Consensus 249 ~~~~~~~~~~yl~~~~~~~~F~~~~~~v---~~~~~ 281 (317)
T 1dl5_A 249 RRLTEIDGTFYYAGPNGVVEFLDDRMRI---YGDAP 281 (317)
T ss_dssp SCEEEETTEEEEECSSEEEEEETTEEEE---EECCH
T ss_pred cccCccCceEEEECCCCeEEEeCCcEEE---EecHH
Confidence 44557888 78899976 698776555 55665
No 37
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.85 E-value=9.3e-22 Score=208.87 Aligned_cols=218 Identities=13% Similarity=0.153 Sum_probs=163.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~ 693 (864)
+.+..++..+..+ +.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...++.++++++++|+.+++ .
T Consensus 56 ~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 56 QDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp HHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC
T ss_pred HHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc
Confidence 3456677777654 679999999999999999998 89999999999999999999998888779999999999987 6
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc-cCccchhhhc-------ccCCCCCCC
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH-RLSPGFIKEY-------IFPGGCLPS 765 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~-------i~p~~~~~~ 765 (864)
+++||+|++..+++|+ .++..+++++.++|||||++++.++.......... ......+... .+......+
T Consensus 134 ~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (285)
T 4htf_A 134 ETPVDLILFHAVLEWV--ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRD 211 (285)
T ss_dssp SSCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBC
T ss_pred CCCceEEEECchhhcc--cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCC
Confidence 7899999999999999 56799999999999999999998765432111000 0000011111 111234568
Q ss_pred HHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEE
Q 002928 766 LNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVF 845 (864)
Q Consensus 766 ~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~ 845 (864)
.+++.+.+++ +||++++++.++..+.. |...+. .. ..+.+++...+.+|+...-.+.....++++
T Consensus 212 ~~~l~~~l~~-aGf~v~~~~~~~~~~~~----~~~~~~-------~~---~~~~~l~~~e~~~~~~~~~~~~~~~~~~va 276 (285)
T 4htf_A 212 PTQVYLWLEE-AGWQIMGKTGVRVFHDY----LREKHQ-------QR---DCYEALLELETRYCRQEPYITLGRYIHVTA 276 (285)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEESSSGGG----CSSTTH-------HH---HTHHHHHHHHHHHTTSTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHH-CCCceeeeeeEEEeeec----cccccc-------Cc---ccHHHHHHHHHHhcCCChHHHHHhheEEEE
Confidence 8999888886 89999999887532210 100000 00 126788999999999999999999999999
Q ss_pred EcCCCCc
Q 002928 846 SRPSNVA 852 (864)
Q Consensus 846 ~~~~~~~ 852 (864)
+||.+..
T Consensus 277 rK~~~~~ 283 (285)
T 4htf_A 277 RKPQSKD 283 (285)
T ss_dssp ECCCC--
T ss_pred EcCCccc
Confidence 9997643
No 38
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.85 E-value=8e-22 Score=203.68 Aligned_cols=177 Identities=17% Similarity=0.216 Sum_probs=146.0
Q ss_pred HHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--C-CCC
Q 002928 620 LLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL--P-KSN 695 (864)
Q Consensus 620 ~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~-~~~ 695 (864)
.+...+. ++++.+|||||||+|.++..+++. +++|+|+|+|+++++.++++ ++++++|+.+. + +++
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~ 100 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDK 100 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTT
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCC
Confidence 3444443 567899999999999999999997 88999999999999999864 78899998775 4 568
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHHh
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPG-GCLPSLNRITSAMT 774 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~l~ 774 (864)
+||+|++..+++|++++++..+++++.++|||||++++.++.... ...+...++.|. ...++..++.+.+.
T Consensus 101 ~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 101 YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS--------LYSLINFYIDPTHKKPVHPETLKFILE 172 (240)
T ss_dssp CBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS--------HHHHHHHTTSTTCCSCCCHHHHHHHHH
T ss_pred CeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch--------hHHHHHHhcCccccccCCHHHHHHHHH
Confidence 999999999999998778899999999999999999998765322 122334445554 35678888888888
Q ss_pred cCCCcEEEEEEecc----------ccHHHHHHHHHHH-HHHhHHHHHhhcCCH
Q 002928 775 SSSRLCVEDLENIG----------IHYYQTLRCWRKN-FLEKQSKIRALGFSE 816 (864)
Q Consensus 775 ~~~gf~v~~~~~~~----------~~y~~tl~~w~~~-~~~~~~~~~~~g~~~ 816 (864)
+ +||+++.++.+. .+ ..++..|+++ |.++++.+...+|++
T Consensus 173 ~-aGf~~~~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~~f~~ 223 (240)
T 3dli_A 173 Y-LGFRDVKIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRILFGP 223 (240)
T ss_dssp H-HTCEEEEEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred H-CCCeEEEEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhhccCc
Confidence 6 899999998887 66 7889999999 999999998887775
No 39
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.84 E-value=1.2e-19 Score=189.27 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=134.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+.++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.|+++++..++.++++++++|+.+++.+
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 35567888888999999999999999999999998878899999999999999999999999888999999999998767
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF-PGGCLPSLNRITSAM 773 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~l 773 (864)
++||+|++..+++|++ ++..++++++++|||||++++.+........ ...+...+.. ....+++..++.+.+
T Consensus 102 ~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 102 EKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-----TEEIAQACGVSSTSDFLTLPGLVGAF 174 (256)
T ss_dssp SCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-----SHHHHHTTTCSCGGGSCCHHHHHHHH
T ss_pred CCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCC-----hHHHHHHHhcccccccCCHHHHHHHH
Confidence 8899999999999994 5799999999999999999998765433211 1111111111 112567889998888
Q ss_pred hcCCCcEEEEEEecc
Q 002928 774 TSSSRLCVEDLENIG 788 (864)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (864)
.+ +||+++.+....
T Consensus 175 ~~-aGf~~~~~~~~~ 188 (256)
T 1nkv_A 175 DD-LGYDVVEMVLAD 188 (256)
T ss_dssp HT-TTBCCCEEEECC
T ss_pred HH-CCCeeEEEEeCC
Confidence 86 999988776544
No 40
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.84 E-value=1e-19 Score=205.84 Aligned_cols=256 Identities=16% Similarity=0.091 Sum_probs=150.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCC-ee---------------eccceeeccC------
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDG-VD---------------LDLCFMVFNR------ 58 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G-~~---------------~d~G~~~~~~------ 58 (864)
+||+|||||++||+||+.|+++|++|+|||+++++||+++|.+.+| +. ++.|.++...
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l 91 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFL 91 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeecccccee
Confidence 4899999999999999999999999999999999999999987655 22 2333333211
Q ss_pred CCchHHHHHHHHcCCCccc--ccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHh-
Q 002928 59 VTYPNMMEFFESLGVDMEI--SDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLED- 135 (864)
Q Consensus 59 ~~~~~~~~l~~~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (864)
.....+.++++++|+.... ..........+|+.+.++.. ........+...+ ....+.++......+...
T Consensus 92 ~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~~-----~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 164 (453)
T 2bcg_G 92 MANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPAN-----EIEAISSPLMGIF--EKRRMKKFLEWISSYKEDD 164 (453)
T ss_dssp ETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSS-----HHHHHHCTTSCHH--HHHHHHHHHHHHHHCBTTB
T ss_pred ecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCCC-----hHHHHhhhccchh--hHHHHHHHHHHHHHhccCC
Confidence 1345677999999975321 11111112234444333220 0111111111111 011122222221111000
Q ss_pred hccCCc-CCCCccHHHHHHhcCCCHHHHHHHHhhhhhc---ccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEec
Q 002928 136 LENNAD-IDRNETLGQFVETRGYSELFQKAYLVPVCGS---IWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVR 211 (864)
Q Consensus 136 ~~~~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (864)
...... .....++.+|+.+.+..+.+...+....... .+...+... ++..+..++... ..+....|.++.
T Consensus 165 p~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~s~---~~~~~~~~~~p~ 238 (453)
T 2bcg_G 165 LSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARP---SFERILLYCQSV---ARYGKSPYLYPM 238 (453)
T ss_dssp GGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHH---HHHHHHHHHHHH---HHHSSCSEEEET
T ss_pred chhhhccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHH---HHHHHHHHHHHH---HhhcCCceEeeC
Confidence 000000 1256789999999888877665433222100 011111111 111111121110 112235677999
Q ss_pred CChHHHHHHHHHHHhhcCceEEeCcceEEEEEe--CCeE-EEEECCCcEEecCEEEEccChH
Q 002928 212 SRSRSYVDKVIELLESLGCQIKTGCEVRSVLQY--GEGR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 212 gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~--~~~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
||+..++++|++.+++.|++|++|++|++|..+ ++++ .|.+ +|+++.||+||+|+++.
T Consensus 239 gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 239 YGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF 299 (453)
T ss_dssp TCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred CCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence 999999999999999999999999999999988 7775 5666 57789999999998765
No 41
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.83 E-value=3.1e-19 Score=186.33 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=154.6
Q ss_pred HHHHHHHHHc-CCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKA-RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
.....+++.+ .++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.|++++...+++++++++++|+.+++ +
T Consensus 32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 3345566666 5788899999999999999999998556999999999999999999999999888999999999988 6
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAM 773 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l 773 (864)
+++||+|++..+++|+ ++..+++++.++|||||++++.++........ .....++... +| .+++..++.+.+
T Consensus 112 ~~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~~~~~~~~~l 183 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERP--AEIEDFWMDA-YP--EISVIPTCIDKM 183 (257)
T ss_dssp TTCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH-CT--TCCBHHHHHHHH
T ss_pred CCCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCh--HHHHHHHHHh-CC--CCCCHHHHHHHH
Confidence 7899999999999999 36899999999999999999988653322111 1111222211 22 367899999888
Q ss_pred hcCCCcEEEEEEeccc-----cHHHHHHHHHHHHHHhHH---HHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEE
Q 002928 774 TSSSRLCVEDLENIGI-----HYYQTLRCWRKNFLEKQS---KIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVF 845 (864)
Q Consensus 774 ~~~~gf~v~~~~~~~~-----~y~~tl~~w~~~~~~~~~---~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~ 845 (864)
++ +||+++....+.. +|...+..+...+..... ...+ +-+...+.+..|..+ .+.+++.-+++
T Consensus 184 ~~-aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~g~~~~v~ 254 (257)
T 3f4k_A 184 ER-AGYTPTAHFILPENCWTEHYFAPQDEVRETFMKEHAGNKTAMD--FMKGQQYERSLYSKY------KDYYGYVFYIG 254 (257)
T ss_dssp HH-TTEEEEEEEECCGGGTCCCCCHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHHHHH------TTTEEEEEEEE
T ss_pred HH-CCCeEEEEEECChhhHHHHHHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHh------CCccceEEEEE
Confidence 86 9999999887763 333344444444332111 1111 122333333333222 45778888888
Q ss_pred Ec
Q 002928 846 SR 847 (864)
Q Consensus 846 ~~ 847 (864)
+|
T Consensus 255 ~k 256 (257)
T 3f4k_A 255 QK 256 (257)
T ss_dssp EE
T ss_pred ec
Confidence 87
No 42
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.81 E-value=1.6e-19 Score=188.89 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 002928 611 EVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ 690 (864)
Q Consensus 611 ~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (864)
..++...++.+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++++..+++ +++++++|+.+
T Consensus 19 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~ 96 (260)
T 1vl5_A 19 IHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQ 96 (260)
T ss_dssp ----CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-C
T ss_pred cccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHh
Confidence 3344455678888888889999999999999999999987 569999999999999999999888875 79999999999
Q ss_pred CC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccC-CCCCCCHHH
Q 002928 691 LP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP-GGCLPSLNR 768 (864)
Q Consensus 691 ~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~ 768 (864)
++ ++++||+|++..+++|+ .++..+++++.++|||||++++.+...+..... ......+.....+ .....+..+
T Consensus 97 l~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 172 (260)
T 1vl5_A 97 MPFTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSD 172 (260)
T ss_dssp CCSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHH
T ss_pred CCCCCCCEEEEEEhhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHH--HHHHHHHHHhcCccccCCCCHHH
Confidence 88 67899999999999999 567999999999999999999987765443110 0000111111112 234567888
Q ss_pred HHHHHhcCCCcEEEEEEeccccHHHHHHHHHHHH
Q 002928 769 ITSAMTSSSRLCVEDLENIGIHYYQTLRCWRKNF 802 (864)
Q Consensus 769 ~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (864)
+.+.+.+ +||+++.++.....+ .+..|.+.+
T Consensus 173 ~~~~l~~-aGf~~~~~~~~~~~~--~~~~~~~~~ 203 (260)
T 1vl5_A 173 WLKMLEE-AGFELEELHCFHKTF--IFEDWCDRM 203 (260)
T ss_dssp HHHHHHH-HTCEEEEEEEEEEEE--EHHHHHHHT
T ss_pred HHHHHHH-CCCeEEEEEEeeccC--CHHHHHHhc
Confidence 8888886 899998877765332 235565543
No 43
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.81 E-value=3.4e-19 Score=206.52 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=83.9
Q ss_pred CcEEEecCChHHHHHHHHHHHhhcCceEEeCcceE--EEEEeCCe-------EEE-EECCCc--EEecCEEEEccChHHH
Q 002928 205 PQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVR--SVLQYGEG-------RIE-IRGDDF--QRVYDGCIMAVHAPDA 272 (864)
Q Consensus 205 ~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~--~I~~~~~~-------~~V-~~~~G~--~~~ad~VV~A~~~~~~ 272 (864)
..++.+.||+..++++|++.+.+ |..|+++++|+ +|.+.+++ |+| .+.+|+ +++||+||+|+|...+
T Consensus 337 ~~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L 415 (721)
T 3ayj_A 337 NEYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQL 415 (721)
T ss_dssp CEECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHH
T ss_pred cceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHH
Confidence 45778999999999999999743 67899999999 99987554 888 456676 7899999999999887
Q ss_pred HH------hh-----------------------cCCC-C-------hHHHHhhccCceee-ceEEEec-----CCCCCCC
Q 002928 273 LR------ML-----------------------GNQA-T-------FEEKRVLGAFQYVY-SDIFLHR-----DKNFMPR 309 (864)
Q Consensus 273 ~~------ll-----------------------~~~~-~-------~~~~~~l~~~~~~~-~~~~l~~-----d~~~~p~ 309 (864)
.. +- ++.+ + ....+++..+.|.. .++.+.+ +.++|..
T Consensus 416 ~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~ 495 (721)
T 3ayj_A 416 TPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQ 495 (721)
T ss_dssp HHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCE
T ss_pred hhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccc
Confidence 53 21 2213 5 67788899999987 6888888 8888876
Q ss_pred C
Q 002928 310 N 310 (864)
Q Consensus 310 ~ 310 (864)
.
T Consensus 496 ~ 496 (721)
T 3ayj_A 496 W 496 (721)
T ss_dssp E
T ss_pred c
Confidence 5
No 44
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.81 E-value=2.1e-19 Score=196.61 Aligned_cols=345 Identities=11% Similarity=0.125 Sum_probs=209.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe-eCCee-eccceeeccCCCchHHHHHHHHcCCCccccc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVD-LDLCFMVFNRVTYPNMMEFFESLGVDMEISD 79 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~-~~G~~-~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~ 79 (864)
||+|||||++||+||++|+++|++|+|+|+++++||++.+.. ..|.. ++.|+|.|+ ...+.+.++++++|.......
T Consensus 31 dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (397)
T 3hdq_A 31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFH-TNSKDVFEYLSRFTEWRPYQH 109 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCE-ESCHHHHHHHHTSCCEEECCC
T ss_pred CEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccC-CChHHHHHHHHHhhhcccccc
Confidence 799999999999999999999999999999999999999987 57876 499999985 357788899999985322111
Q ss_pred ceeeEEecCCCceeecCCCCCCchhhhhhh-cCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCC
Q 002928 80 MSFSVSLDKGQGCEWSSRNGMSGLFAQKKN-LLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYS 158 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (864)
. .....+|+.+.++.. +.. +..... ...+. ....++.. ......++.++++|+.+. ++
T Consensus 110 ~--~~~~~~g~l~~lP~~--~~~-~~~l~~~~~~~~-------------~~~~~l~~--~~~~~~~~~s~~e~~~~~-~G 168 (397)
T 3hdq_A 110 R--VLASVDGQLLPIPIN--LDT-VNRLYGLNLTSF-------------QVEEFFAS--VAEKVEQVRTSEDVVVSK-VG 168 (397)
T ss_dssp B--EEEEETTEEEEESCC--HHH-HHHHHTCCCCHH-------------HHHHHHHH--HCCCCSSCCBHHHHHHHH-HH
T ss_pred c--ceEEECCEEEEcCCC--hHH-HHHhhccCCCHH-------------HHHHHHhh--cccCCCCCcCHHHHHHHh-cC
Confidence 1 122345666665431 000 000000 11111 11111111 112233678999999887 77
Q ss_pred HHHHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCC----CCcE-EEecCChHHHHHHHHHHHhhcCceEE
Q 002928 159 ELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFG----RPQW-LTVRSRSRSYVDKVIELLESLGCQIK 233 (864)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~gG~~~l~~~La~~~~~~G~~I~ 233 (864)
+.+.+.++.|++.+.|+.++++++..-+ .+-......+ ...+ .+|+||+..++++|++.. |++|+
T Consensus 169 ~~~~e~~~~py~~k~~~~~~~~Lsa~~~-------~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~---g~~V~ 238 (397)
T 3hdq_A 169 RDLYNKFFRGYTRKQWGLDPSELDASVT-------ARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSP---NIKVM 238 (397)
T ss_dssp HHHHHHHTHHHHHHHHSSCGGGSBTTTG-------GGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCST---TEEEE
T ss_pred HHHHHHHHHHHhCchhCCCHHHHHHHHH-------HhcCcccccCccchhhhheeccCCCHHHHHHHHHhcc---CCEEE
Confidence 8889999999999999999999965322 1111111111 1233 379999999999987643 99999
Q ss_pred eCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCceeec-eEEEecCCCCCCCCcC
Q 002928 234 TGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVYS-DIFLHRDKNFMPRNPA 312 (864)
Q Consensus 234 ~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~~-~~~l~~d~~~~p~~~~ 312 (864)
+|++|+++ +.++.+|+||+|+|.+... .- .+..++|.+. .+.+..+..-... .
T Consensus 239 l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~---~~--------~~g~L~yrsl~~~~~~~~~~~~~~--~ 292 (397)
T 3hdq_A 239 LNTDYREI-------------ADFIPFQHMIYTGPVDAFF---DF--------CYGKLPYRSLEFRHETHDTEQLLP--T 292 (397)
T ss_dssp ESCCGGGT-------------TTTSCEEEEEECSCHHHHT---TT--------TTCCCCEEEEEEEEEEESSSCSCS--S
T ss_pred ECCeEEec-------------cccccCCEEEEcCCHHHHH---HH--------hcCCCCCceEEEEEEEeccccCCC--C
Confidence 99999833 3356799999999987552 21 2457788774 3344455322111 1
Q ss_pred CcccceeccC--CCCceEEEEeccccccCccCCCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhh-cCCCC
Q 002928 313 AWSAWNFLGS--TGGKVCLTYWLNVVQNIEETRLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHI-QGKRG 389 (864)
Q Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~-~~~~~ 389 (864)
. |.|+.. |-.|......+. .+ ... .-.+..-.|.... ...+|+...........-.+. +..+|
T Consensus 293 ~---~vn~~d~~p~tRi~e~k~~~-~~--~~~-~t~i~~Ey~~~~~-------~pyYpv~~~~~~~~~~~y~~~a~~~~~ 358 (397)
T 3hdq_A 293 G---TVNYPNDYAYTRVSEFKHIT-GQ--RHH-QTSVVYEYPRAEG-------DPYYPVPRPENAELYKKYEALADAAQD 358 (397)
T ss_dssp S---EEECSSSSSCSEEEEHHHHH-CC--CCS-SEEEEEEEEESSS-------SCCEECCSHHHHHHHHHHHHHHHHCTT
T ss_pred e---EEEeCCCCcceEEEeecccC-CC--CCC-CEEEEEEECCCCC-------ccccccCchhHHHHHHHHHHHHhcCCC
Confidence 1 333311 112222111110 00 000 1111111111000 024677775544443333332 23579
Q ss_pred eEEEecc---CCCCCChhhHhHHHHHHHHhccc
Q 002928 390 IWFCGAY---QGYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 390 l~~aG~~---~g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
|+|+|.. ..+.. ..++.+|..+|+.++..
T Consensus 359 v~~~GRlg~y~Y~~m-d~~i~~al~~~~~~~~~ 390 (397)
T 3hdq_A 359 VTFVGRLATYRYYNM-DQVVAQALATFRRLQGQ 390 (397)
T ss_dssp EEECSTTTTTCCCCH-HHHHHHHHHHHHHHHC-
T ss_pred EEEcccceEEEeccH-HHHHHHHHHHHHHHhcc
Confidence 9999994 45555 89999999999988753
No 45
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.81 E-value=1.9e-19 Score=186.71 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=103.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISC 703 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~ 703 (864)
+++|.+|||||||+|..+..++++ ++++|+|||+|++|++.|+++++..+...+|+++++|+.+++. ++||+|+++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 689999999999999999999986 4789999999999999999999998888899999999999874 469999999
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
.+++|+++++...++++++++|||||++++.+.....
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 9999998888889999999999999999998876554
No 46
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.80 E-value=1.2e-17 Score=181.72 Aligned_cols=298 Identities=16% Similarity=0.190 Sum_probs=182.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcccccc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDMEISDM 80 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 80 (864)
+||+|||||++||++|+.|+++|++|+|||+++.+||++.+....+..++.|...+.. ..+.+.++++.+.......
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 79 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA-RDRRFATAVKQWQAQGHVA-- 79 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC-CSHHHHHHHHHHHHHTSEE--
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEec-CCHHHHHHHHHHHhCCCee--
Confidence 5899999999999999999999999999999999999999999999999998877742 3444555554432100000
Q ss_pred eeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhccCCcCCCCccHHHHHHhcCCCHH
Q 002928 81 SFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLENNADIDRNETLGQFVETRGYSEL 160 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 160 (864)
. ..+....... . . +.
T Consensus 80 ----~-~~~~~~~~~~------------------------------------------------~---------~-~~-- 94 (336)
T 1yvv_A 80 ----E-WTPLLYNFHA------------------------------------------------G---------R-LS-- 94 (336)
T ss_dssp ----E-ECCCEEEESS------------------------------------------------S---------B-CC--
T ss_pred ----e-ccccceeccC------------------------------------------------c---------c-cc--
Confidence 0 0000000000 0 0 00
Q ss_pred HHHHHHhhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEE
Q 002928 161 FQKAYLVPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRS 240 (864)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~ 240 (864)
........+....|+..+.+.+++ |++|+++++|++
T Consensus 95 ---------------------------------------~~~~~~~~~~~~~~~~~l~~~l~~-----g~~i~~~~~v~~ 130 (336)
T 1yvv_A 95 ---------------------------------------PSPDEQVRWVGKPGMSAITRAMRG-----DMPVSFSCRITE 130 (336)
T ss_dssp ---------------------------------------CCCTTSCEEEESSCTHHHHHHHHT-----TCCEECSCCEEE
T ss_pred ---------------------------------------cCCCCCccEEcCccHHHHHHHHHc-----cCcEEecCEEEE
Confidence 000011233556677788777765 779999999999
Q ss_pred EEEeCCeEEEEECCCcEEe-cCEEEEccChHHHHHhhcCCCChHHHHhhccCceee-ceEEEecCCCCCCCCcCCc----
Q 002928 241 VLQYGEGRIEIRGDDFQRV-YDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYVY-SDIFLHRDKNFMPRNPAAW---- 314 (864)
Q Consensus 241 I~~~~~~~~V~~~~G~~~~-ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~~~l~~d~~~~p~~~~~~---- 314 (864)
|+.++++|.|++.+|+.+. ||.||+|+|+....++++. .+.....+..+.|.. .++.+.++.++.......+
T Consensus 131 i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (336)
T 1yvv_A 131 VFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAA--APKLASVVAGVKMDPTWAVALAFETPLQTPMQGCFVQDS 208 (336)
T ss_dssp EEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGTT--CHHHHHHHTTCCEEEEEEEEEEESSCCSCCCCEEEECSS
T ss_pred EEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhcc--CHHHHHHHhhcCccceeEEEEEecCCCCCCCCeEEeCCC
Confidence 9999999999999997664 9999999999988887763 345567778888886 3455666655432211100
Q ss_pred -ccceecc--CC--CCc-eEEEEecc-----ccccCc-----cCCCCeEEEcCC-CC-CCc-ceeeeEEcCCCCCCHHHH
Q 002928 315 -SAWNFLG--ST--GGK-VCLTYWLN-----VVQNIE-----ETRLPFLVTLNP-DH-TPE-HTLFKWSTSHPVPSVAAS 375 (864)
Q Consensus 315 -~~~~~~~--~~--~~~-~~~~~~~~-----~~~~l~-----~~~~~~~~~l~p-~~-~~~-~~~~~w~~~~p~~~~~~~ 375 (864)
-.|.+.. .| .+. ..+..... ....+. +.+.+.+.++.. .. .+. ....+|.++.|.+.....
T Consensus 209 ~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~a~~~~~~~~~ 288 (336)
T 1yvv_A 209 PLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWG 288 (336)
T ss_dssp SEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCS
T ss_pred ceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCccCCCCCCCCC
Confidence 0122211 11 111 11211111 011110 001111112222 11 122 256789988777653221
Q ss_pred HHHHhhhhhcCCCCeEEEeccC-CCCCChhhHhHHHHHHHHhccc
Q 002928 376 KASLELDHIQGKRGIWFCGAYQ-GYGFHEDGLKAGMIAAHGMLGK 419 (864)
Q Consensus 376 ~~~~~l~~~~~~~~l~~aG~~~-g~G~~e~a~~sG~~aA~~ilg~ 419 (864)
......++|++||||+ |.|+ ++|+.+|.++|+.|...
T Consensus 289 ------~~~~~~~rl~laGDa~~g~gv-~~a~~sg~~lA~~l~~~ 326 (336)
T 1yvv_A 289 ------ALSDADLGIYVCGDWCLSGRV-EGAWLSGQEAARRLLEH 326 (336)
T ss_dssp ------CEEETTTTEEECCGGGTTSSH-HHHHHHHHHHHHHHHHH
T ss_pred ------eeecCCCCEEEEecCCCCCCH-HHHHHHHHHHHHHHHHH
Confidence 0113458999999974 5567 99999999999999753
No 47
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.80 E-value=8.5e-19 Score=185.07 Aligned_cols=189 Identities=19% Similarity=0.244 Sum_probs=131.9
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC
Q 002928 598 YSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG 676 (864)
Q Consensus 598 ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~ 676 (864)
|..+|+......+........+.+.....++++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+
T Consensus 6 Y~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 85 (276)
T 3mgg_A 6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85 (276)
T ss_dssp -----------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 44455554455555544444455555556789999999999999999999998 57899999999999999999999888
Q ss_pred CCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc-cCccchh-
Q 002928 677 LQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH-RLSPGFI- 753 (864)
Q Consensus 677 l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~- 753 (864)
++ +++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|||||.+++.+........... .....++
T Consensus 86 ~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T 3mgg_A 86 IK-NVKFLQANIFSLPFEDSSFDHIFVCFVLEHL--QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWN 162 (276)
T ss_dssp CC-SEEEEECCGGGCCSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHH
T ss_pred CC-CcEEEEcccccCCCCCCCeeEEEEechhhhc--CCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHH
Confidence 75 7999999999988 67899999999999999 45789999999999999999998754322111100 0011111
Q ss_pred ---hhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecccc
Q 002928 754 ---KEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIH 790 (864)
Q Consensus 754 ---~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~ 790 (864)
......++...+..++.+.+++ +||++++++....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~v~~~~~~~~ 201 (276)
T 3mgg_A 163 CLIRVQAYMKGNSLVGRQIYPLLQE-SGFEKIRVEPRMVY 201 (276)
T ss_dssp HHHHHHHHTTCCTTGGGGHHHHHHH-TTCEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHH-CCCCeEEEeeEEEE
Confidence 1112234455566778777776 89999998866543
No 48
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.78 E-value=2.9e-18 Score=183.24 Aligned_cols=217 Identities=15% Similarity=0.166 Sum_probs=132.1
Q ss_pred cCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHH
Q 002928 567 KNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIE 646 (864)
Q Consensus 567 ~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~ 646 (864)
.+++....+.+..+||.....|.... .++..+ .+... .+.+...+....++++.+|||||||+|.++..
T Consensus 13 ~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~------~~~~~-~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~ 81 (298)
T 1ri5_A 13 DQAMEGKKEEIREHYNSIRERGRESR----QRSKTI------NIRNA-NNFIKACLIRLYTKRGDSVLDLGCGKGGDLLK 81 (298)
T ss_dssp --------------------------------CCSH------HHHHH-HHHHHHHHHHHHCCTTCEEEEETCTTTTTHHH
T ss_pred cchhhhhHHHHHHHHHHhhccccccc----ccchhh------hHHHH-HHHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 34566677889999987644322111 111100 11111 12233333333357889999999999999999
Q ss_pred HHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchhhhh--hChhhHHHHHHHHH
Q 002928 647 IVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEMIEA--VGHDYMEEFFGCCE 722 (864)
Q Consensus 647 la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~~~~--~~~~~~~~~l~~~~ 722 (864)
+++....+|+|+|+|+.+++.|+++....++..+++++++|+.+++ ++++||+|++..+++| .+.+++..+++++.
T Consensus 82 l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~ 161 (298)
T 1ri5_A 82 YERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIA 161 (298)
T ss_dssp HHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHH
Confidence 9887445999999999999999999998887678999999999876 4679999999999988 44578899999999
Q ss_pred hccccCcEEEEEEecCCCcc------------ccccc----Cccc-hhhhccc---CC-----CCCCCHHHHHHHHhcCC
Q 002928 723 SLLAEHGLLLLQFISVPDQC------------YDEHR----LSPG-FIKEYIF---PG-----GCLPSLNRITSAMTSSS 777 (864)
Q Consensus 723 ~~LkpgG~l~i~~~~~~~~~------------~~~~~----~~~~-~~~~~i~---p~-----~~~~~~~~~~~~l~~~~ 777 (864)
++|||||++++..+...... +.... .... +-..|.| +. ..+.+.+++.+.+++ +
T Consensus 162 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~-a 240 (298)
T 1ri5_A 162 RHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKR-L 240 (298)
T ss_dssp HTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHT-T
T ss_pred HhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHH-c
Confidence 99999999999876532100 00000 0000 0000110 10 235678899888886 9
Q ss_pred CcEEEEEEeccccHHHHH
Q 002928 778 RLCVEDLENIGIHYYQTL 795 (864)
Q Consensus 778 gf~v~~~~~~~~~y~~tl 795 (864)
||+++.++.+...|...+
T Consensus 241 Gf~~v~~~~~~~~~~~~~ 258 (298)
T 1ri5_A 241 GLSLVERKGFIDFYEDEG 258 (298)
T ss_dssp TEEEEEEEEHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHH
Confidence 999999988876665544
No 49
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.78 E-value=1.9e-18 Score=178.13 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 614 QMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 614 q~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
|......+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 83 (239)
T 1xxl_A 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF 83 (239)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS
T ss_pred cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCC
Confidence 3455668888899999999999999999999999987 679999999999999999999888875 8999999999988
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccC-CCCCCCHHHHHH
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFP-GGCLPSLNRITS 771 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~ 771 (864)
++++||+|++..+++|+ .++..+++++.++|||||++++.+...+.... .......+.....| .....+..++.+
T Consensus 84 ~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPV--LDEFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp CTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHH--HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred CCCcEEEEEECCchhhc--cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChh--HHHHHHHHHHhccccccCCCCHHHHHH
Confidence 67899999999999999 56899999999999999999998776544311 00000111111112 234567888888
Q ss_pred HHhcCCCcEEEEEEeccccHHHHHHHHHHHHH
Q 002928 772 AMTSSSRLCVEDLENIGIHYYQTLRCWRKNFL 803 (864)
Q Consensus 772 ~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~ 803 (864)
.+.+ +||+++.+......+ ....|.+.+.
T Consensus 160 ll~~-aGf~~~~~~~~~~~~--~~~~w~~~~~ 188 (239)
T 1xxl_A 160 MFSA-NQLAYQDIQKWNLPI--QYDSWIKRGG 188 (239)
T ss_dssp HHHH-TTEEEEEEEEEEEEE--EHHHHHHHHT
T ss_pred HHHH-CCCcEEEEEeecCcc--CHHHHHHHcC
Confidence 8886 899998887764332 2456665553
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.78 E-value=1.9e-18 Score=173.03 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=119.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCCeEEEEc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAG-----------LQDHIRLYLC 686 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~-----------l~~~v~~~~~ 686 (864)
+..+++.+.++++.+|||+|||+|..+..++++ |.+|+|||+|++|++.|+++..... ...+++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 445567777888999999999999999999997 8899999999999999998764210 1248999999
Q ss_pred ccCCCC-CC-CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCC
Q 002928 687 DYRQLP-KS-NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLP 764 (864)
Q Consensus 687 d~~~~~-~~-~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (864)
|+.+++ .+ ++||+|++..+++|++.++...++++++++|||||++++.++..+... ... .| ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----~~~--------~~--~~~ 155 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----LEG--------PP--FSV 155 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----SSS--------CC--CCC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----cCC--------CC--CCC
Confidence 999998 43 799999999999999887788999999999999999666554432110 000 01 124
Q ss_pred CHHHHHHHHhcCCCcEEEEEEecc
Q 002928 765 SLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 765 ~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
+.+++.+.+. . ||+++.++...
T Consensus 156 ~~~el~~~~~-~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 156 PQTWLHRVMS-G-NWEVTKVGGQD 177 (203)
T ss_dssp CHHHHHHTSC-S-SEEEEEEEESS
T ss_pred CHHHHHHHhc-C-CcEEEEecccc
Confidence 6777766655 3 99998887654
No 51
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.77 E-value=1.3e-18 Score=178.72 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC--C
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP--K 693 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--~ 693 (864)
.++.+++.+.++++.+|||||||+|.++..++++ +++|+|+|+|++|++.|++++... .+.....|+.. .+ .
T Consensus 33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGG
T ss_pred HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccccc
Confidence 3467888889999999999999999999999997 889999999999999999987543 22333333222 11 2
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC-----------------------cccccccCcc
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD-----------------------QCYDEHRLSP 750 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------------------~~~~~~~~~~ 750 (864)
+++||+|++..+++|+..++...+++++.++| |||+++++...... .....+....
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 186 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAG 186 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGTT
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhhh
Confidence 47899999999999998888899999999999 99999997543211 1111124467
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhcCCCc
Q 002928 751 GFIKEYIFPGGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~l~~~~gf 779 (864)
.||.+|+||+|.+|+..-+ +.... .|=
T Consensus 187 ~~i~~~~~p~g~~~~~~~~-~~~~~-~g~ 213 (261)
T 3iv6_A 187 DVLDRALVPHGLIDKPTLL-EWYRR-RGK 213 (261)
T ss_dssp HHHHHHCCCCTTCCHHHHH-HHHHH-TCE
T ss_pred hHHHhccCCCCcccHHHHH-HHHHh-cCc
Confidence 8999999999999987655 44443 443
No 52
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.77 E-value=1.2e-17 Score=187.54 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=157.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEe-e--------------------CCeeeccceeeccCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-I--------------------DGVDLDLCFMVFNRV 59 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~-~--------------------~G~~~d~G~~~~~~~ 59 (864)
+||+|||||++||++|+.|+++|++|+|+|+++++||+++|.+ . .++.+|.|++++..
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~- 85 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMA- 85 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEET-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeec-
Confidence 4899999999999999999999999999999999999999988 1 34677888877642
Q ss_pred CchHHHHHHHHcCCCccc--ccceeeEEecCCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHHhhc
Q 002928 60 TYPNMMEFFESLGVDMEI--SDMSFSVSLDKGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVLSYLEDLE 137 (864)
Q Consensus 60 ~~~~~~~l~~~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (864)
...+.++++++|+.... ........+.+|+.+.++.. ........+...+ ....+.++......+.....
T Consensus 86 -~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~-----~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~p 157 (433)
T 1d5t_A 86 -NGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPST-----ETEALASNLMGMF--EKRRFRKFLVFVANFDENDP 157 (433)
T ss_dssp -TSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCS-----HHHHHHCSSSCHH--HHHHHHHHHHHHHHCCTTCG
T ss_pred -cchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCC-----HHHHhhCcccChh--hHHHHHHHHHHHHhhcccCc
Confidence 34677899999976422 11111222344444333220 0111111111111 01112222222111000000
Q ss_pred --cCCcCCCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHH----HHHHHHhhcCCCccCCCCcEEEec
Q 002928 138 --NNADIDRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAF----SVLSFCRNHHALQIFGRPQWLTVR 211 (864)
Q Consensus 138 --~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 211 (864)
.........++.+|+++.+..+.+...+...+ ....+.++.+. +.. .+..+.... ..++...+.++.
T Consensus 158 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~-~~~~~~~~~~~---p~~~~~~~~~~~~~s~---~~~g~~~~~~p~ 230 (433)
T 1d5t_A 158 KTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHAL-ALYRTDDYLDQ---PCLETINRIKLYSESL---ARYGKSPYLYPL 230 (433)
T ss_dssp GGGTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHT-SCCSSSGGGGS---BSHHHHHHHHHHHHSC---CSSSCCSEEEET
T ss_pred hhccccccccCCHHHHHHHcCCCHHHHHHHHHHH-HhccCCCccCC---CHHHHHHHHHHHHHHH---HhcCCCcEEEeC
Confidence 00001256799999999888877665433221 11111222222 322 112222211 113345578999
Q ss_pred CChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 212 SRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 212 gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
||+..++++|++.+++.|++|++|++|++|..+++++.+.+.+|+++.||+||+|++..
T Consensus 231 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 231 YGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV 289 (433)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred cCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence 99999999999999999999999999999999888876444578789999999999776
No 53
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.77 E-value=4.5e-18 Score=172.68 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=126.6
Q ss_pred HHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
...+++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++ .+. .+++++++|+.++.++++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~ 107 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQ 107 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCc
Confidence 345555554 678889999999999999999998 8899999999999999987 344 389999999988866789
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC--ccchhhhcccCC------CCCCCHHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL--SPGFIKEYIFPG------GCLPSLNR 768 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~i~p~------~~~~~~~~ 768 (864)
||+|++..+++|++++....+++++.++|||||.+++.++..+......... ...++.+.+..+ ..+++..+
T Consensus 108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHH
Confidence 9999999999999876679999999999999999999988764432211100 111111111111 23568899
Q ss_pred HHHHHhcCCCcEEEEEEeccccH
Q 002928 769 ITSAMTSSSRLCVEDLENIGIHY 791 (864)
Q Consensus 769 ~~~~l~~~~gf~v~~~~~~~~~y 791 (864)
+.+.+++ +||+++..+....|+
T Consensus 188 ~~~~l~~-aGf~v~~~~~~~~~~ 209 (218)
T 3ou2_A 188 LTERLTA-LGWSCSVDEVHPGFL 209 (218)
T ss_dssp HHHHHHH-TTEEEEEEEEETTEE
T ss_pred HHHHHHH-CCCEEEeeeccccce
Confidence 9888886 999988777655443
No 54
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.76 E-value=2.5e-18 Score=174.81 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=125.0
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+..+++.+..+++.+|||||||+|.++..+++. +.+|+|+|+|+++++.++++.. .+++++++|+.+++..++|
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~f 107 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSI 107 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCC
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCe
Confidence 345666666678899999999999999999997 8899999999999999998764 4799999999998843899
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhh-------cccCCCCCCCHHHHH
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKE-------YIFPGGCLPSLNRIT 770 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~i~p~~~~~~~~~~~ 770 (864)
|+|++..+++|+++.....+++++.++|||||.+++.+.......... ........ .-.+...+++.+++.
T Consensus 108 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 108 DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD--KTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHH--HHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred EEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHH--HHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 999999999999765555699999999999999999876544321100 00000000 001113467889998
Q ss_pred HHHhcCCCcEEEEEEeccc
Q 002928 771 SAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~~ 789 (864)
+.+++ +||+++..+....
T Consensus 186 ~~l~~-aGf~v~~~~~~~~ 203 (220)
T 3hnr_A 186 TIFEN-NGFHVTFTRLNHF 203 (220)
T ss_dssp HHHHH-TTEEEEEEECSSS
T ss_pred HHHHH-CCCEEEEeeccce
Confidence 88887 9999988776543
No 55
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.76 E-value=3.4e-18 Score=171.47 Aligned_cols=141 Identities=13% Similarity=0.164 Sum_probs=117.2
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhh
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEA 708 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~ 708 (864)
+.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. .+++++++|+.+++ ++++||+|++..+++|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 789999999999999999998 889999999999999999873 27999999999988 6789999999999999
Q ss_pred hChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 709 VGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 709 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
++.+++..+++++.++|||||++++.++...... .+.. . .......+..++.+.+++ +||+++.++...
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~-------~-~~~~~~~~~~~~~~~l~~-~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 115 MGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE--PMYH-------P-VATAYRWPLPELAQALET-AGFQVTSSHWDP 183 (203)
T ss_dssp CCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE--EECC-------S-SSCEEECCHHHHHHHHHH-TTEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh--hhhc-------h-hhhhccCCHHHHHHHHHH-CCCcEEEEEecC
Confidence 9877899999999999999999999876544311 1100 0 001234578889888886 899999988764
No 56
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.76 E-value=1.9e-18 Score=177.50 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=126.8
Q ss_pred HHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 618 VSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 618 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
.+.+++.+. ..++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+ +++++++|+.+++..+
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~ 108 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEE 108 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCS
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCC
Confidence 355666665 567899999999999999999998 58899999999999999999876543 8999999999988558
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccch-------------hhhcc--cCC
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGF-------------IKEYI--FPG 760 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------~~~~i--~p~ 760 (864)
+||+|++..+++|+++.....+++++.++|||||++++.+...+............| +.... ...
T Consensus 109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 999999999999997766678999999999999999999877654321100000000 00000 123
Q ss_pred CCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 761 GCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 761 ~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
...++.+++.+.+++ +||+.+++..
T Consensus 189 ~~~~~~~~~~~ll~~-aGF~~v~~~~ 213 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKE-AGFRDVSCIY 213 (234)
T ss_dssp CCCCBHHHHHHHHHH-TTCEEEEEEE
T ss_pred ccccCHHHHHHHHHH-cCCCceeeee
Confidence 456788898888886 9999987654
No 57
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.75 E-value=1.4e-17 Score=169.20 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=129.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
+.+++.+.+.++.+|||||||+|.++..+++.. ..+|+|+|+|+++++.|++++...+++ +++++++|+.+++ +++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSS
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCC
Confidence 467778888899999999999999999999973 579999999999999999999988876 8999999999988 678
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhc
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTS 775 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~ 775 (864)
+||+|++..+++|+ .++..+++++.++|||||.+++.++......... . .....+.+++.+.+.+
T Consensus 106 ~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~l~~ 170 (219)
T 3dh0_A 106 TVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----P--------PEEVYSEWEVGLILED 170 (219)
T ss_dssp CEEEEEEESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----C--------GGGSCCHHHHHHHHHH
T ss_pred CeeEEEeehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccccccCC-----c--------hhcccCHHHHHHHHHH
Confidence 89999999999999 5689999999999999999999887654432110 0 1123478888888886
Q ss_pred CCCcEEEEEEeccc
Q 002928 776 SSRLCVEDLENIGI 789 (864)
Q Consensus 776 ~~gf~v~~~~~~~~ 789 (864)
+||+++.+..++.
T Consensus 171 -~Gf~~~~~~~~~~ 183 (219)
T 3dh0_A 171 -AGIRVGRVVEVGK 183 (219)
T ss_dssp -TTCEEEEEEEETT
T ss_pred -CCCEEEEEEeeCC
Confidence 8999998877653
No 58
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.75 E-value=2.2e-18 Score=180.54 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=121.8
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEch
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCE 704 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~ 704 (864)
.++++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++ . +...+++++++|+.+++ ++++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 5678899999999999999999997 889999999999999999987 2 33358999999999988 678999999999
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccc-ccc-cCccchhhhcccC---CCCCCCHHHHHHHHhcCCCc
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCY-DEH-RLSPGFIKEYIFP---GGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~-~~~~~~~~~~i~p---~~~~~~~~~~~~~l~~~~gf 779 (864)
+++|+ .++..+++++.++|||||.+++. +..++... ... ..........-+| ....++..++.+.+.+ +||
T Consensus 113 ~l~~~--~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf 188 (263)
T 2yqz_A 113 LWHLV--PDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR-LGL 188 (263)
T ss_dssp CGGGC--TTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH-TTC
T ss_pred chhhc--CCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH-cCC
Confidence 99999 46899999999999999999987 32221000 000 0011111221122 1123456777777776 899
Q ss_pred EEEEEEeccccHHHHHHHHHHHH
Q 002928 780 CVEDLENIGIHYYQTLRCWRKNF 802 (864)
Q Consensus 780 ~v~~~~~~~~~y~~tl~~w~~~~ 802 (864)
+++.++........+...+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~ 211 (263)
T 2yqz_A 189 KPRTREVARWREERTPREALEAL 211 (263)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHH
T ss_pred CcceEEEeeeecCCCHHHHHHHH
Confidence 98776554333333444444444
No 59
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.75 E-value=7.6e-18 Score=174.79 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=120.9
Q ss_pred HHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++... +++++++|+.++.++++|
T Consensus 31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~f 104 (250)
T 2p7i_A 31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRY 104 (250)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCE
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcc
Confidence 44444443 357789999999999999999987 77999999999999999987532 799999999988767899
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHH-hccccCcEEEEEEecCCCcccc------cccCccchhhhc-ccCCCCCCCHHHH
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCE-SLLAEHGLLLLQFISVPDQCYD------EHRLSPGFIKEY-IFPGGCLPSLNRI 769 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~-i~p~~~~~~~~~~ 769 (864)
|+|++..+++|+ .++..+++++. ++|||||++++.++........ .......+.... ........+..++
T Consensus 105 D~v~~~~~l~~~--~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (250)
T 2p7i_A 105 DNIVLTHVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTL 182 (250)
T ss_dssp EEEEEESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHH
T ss_pred cEEEEhhHHHhh--cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHH
Confidence 999999999999 56799999999 9999999999987654321100 000000000000 1122346788999
Q ss_pred HHHHhcCCCcEEEEEEec
Q 002928 770 TSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~ 787 (864)
.+.+++ +||++++++.+
T Consensus 183 ~~~l~~-~Gf~~~~~~~~ 199 (250)
T 2p7i_A 183 ERDASR-AGLQVTYRSGI 199 (250)
T ss_dssp HHHHHH-TTCEEEEEEEE
T ss_pred HHHHHH-CCCeEEEEeee
Confidence 888886 89999988754
No 60
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.75 E-value=1e-17 Score=172.11 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=125.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+..++..+.++++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+...+++++++|+.+++++++|
T Consensus 56 l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f 133 (235)
T 3lcc_A 56 IVHLVDTSSLPLG-RALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELF 133 (235)
T ss_dssp HHHHHHTTCSCCE-EEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCE
T ss_pred HHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCe
Confidence 3455565655554 9999999999999999885 8899999999999999999987755556899999999998866799
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
|+|++..+++|+++++...+++++.++|||||++++.++....... .. ....+.+++.+.+.+ +
T Consensus 134 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----~~----------~~~~~~~~~~~~l~~-~ 197 (235)
T 3lcc_A 134 DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG-----GP----------PYKVDVSTFEEVLVP-I 197 (235)
T ss_dssp EEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS-----CS----------SCCCCHHHHHHHHGG-G
T ss_pred eEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC-----CC----------CccCCHHHHHHHHHH-c
Confidence 9999999999998778999999999999999999997765432110 00 012467888888876 8
Q ss_pred CcEEEEEEeccc
Q 002928 778 RLCVEDLENIGI 789 (864)
Q Consensus 778 gf~v~~~~~~~~ 789 (864)
||+++.++....
T Consensus 198 Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 198 GFKAVSVEENPH 209 (235)
T ss_dssp TEEEEEEEECTT
T ss_pred CCeEEEEEecCC
Confidence 999999887653
No 61
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.74 E-value=1.4e-17 Score=185.51 Aligned_cols=252 Identities=10% Similarity=0.075 Sum_probs=157.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeC--------------------CeeeccceeeccCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--------------------GVDLDLCFMVFNRVTY 61 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~--------------------G~~~d~G~~~~~~~~~ 61 (864)
||+|||||++|+++|+.|+++|++|+|+|+++++||++++.+.+ ++.+|++++.+. ..
T Consensus 22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~--~~ 99 (475)
T 3p1w_A 22 DVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL--VG 99 (475)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE--TT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee--cC
Confidence 89999999999999999999999999999999999999998642 357888877763 45
Q ss_pred hHHHHHHHHcCCCcccccce----eeEEec-------CCCceeecCCCCCCchhhhhhhcCChHHHHHHHHHHhHHHHHH
Q 002928 62 PNMMEFFESLGVDMEISDMS----FSVSLD-------KGQGCEWSSRNGMSGLFAQKKNLLNPYFWQMLREIIKFNDDVL 130 (864)
Q Consensus 62 ~~~~~l~~~lG~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (864)
..+.+++.+.|+........ +..... +++.+..+. +....+. ...+.+. ....+.++.....
T Consensus 100 g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPs--s~~e~~~--~~lLs~~---eK~~l~kFL~~l~ 172 (475)
T 3p1w_A 100 GNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPA--TDMEALV--SPLLSLM---EKNRCKNFYQYVS 172 (475)
T ss_dssp SHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCC--SHHHHHT--CTTSCHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCC--CHHHHhh--ccCCCHH---HHHHHHHHHHHHH
Confidence 67888988888865442221 211111 222332221 1111111 1122211 1112223332221
Q ss_pred HHHHhhc-cCCcC-CCCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHHH----HHHhhcCCCccCCC
Q 002928 131 SYLEDLE-NNADI-DRNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSVL----SFCRNHHALQIFGR 204 (864)
Q Consensus 131 ~~~~~~~-~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~ 204 (864)
.+..... ..... ....++.+|+++.++++...+.++.++..... + +....++...+ .+... +..++.
T Consensus 173 ~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~--~--~~~~~~a~~~l~ri~~y~~S---l~~yg~ 245 (475)
T 3p1w_A 173 EWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLN--D--DYLKQPAYLTLERIKLYMQS---ISAFGK 245 (475)
T ss_dssp HCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS--S--GGGGSBHHHHHHHHHHHHHH---HHHHSS
T ss_pred hhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcC--C--CcccCCHHHHHHHHHHHHHH---HhhcCC
Confidence 1100000 01111 14679999999999998887755444422211 1 11112333222 22211 112344
Q ss_pred CcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEE-eCCe-EEEEECCCcEEecCEEEEccCh
Q 002928 205 PQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQ-YGEG-RIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 205 ~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~-~~~~-~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+++||++.++++|++.+++.|++|+++++|++|.. ++++ +.|++.+|++++||+||+|+..
T Consensus 246 s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 246 SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY 312 (475)
T ss_dssp CSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred CceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence 577899999999999999999999999999999999998 5566 5788999888999999999753
No 62
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.74 E-value=2.2e-18 Score=174.99 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=129.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (864)
...+.+++.+..+++ +|||||||+|.++..+++.++.+|+|+|+|+.+++.|+++++..++.++++++++|+.+++ ++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 455677888887777 9999999999999999998778999999999999999999999998889999999999988 67
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccccc-----CccchhhhcccCCCCCCCHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR-----LSPGFIKEYIFPGGCLPSLNRI 769 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~~i~p~~~~~~~~~~ 769 (864)
++||+|++..+++|+ +++..+++++.++|||||++++.+............ ....|.. .+.+.....+.+++
T Consensus 110 ~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKE-FNRKNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHH-HHHHHSSHHHHHHH
T ss_pred ccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHh-hhhhccccCCHHHH
Confidence 899999999999999 678999999999999999999976543321110000 0001111 00011223366788
Q ss_pred HHHHhcCCCcEEEEEEec
Q 002928 770 TSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~ 787 (864)
.+.+++ +||+++++...
T Consensus 187 ~~~l~~-aGf~~v~~~~~ 203 (219)
T 3dlc_A 187 QNVLDE-IGISSYEIILG 203 (219)
T ss_dssp HHHHHH-HTCSSEEEEEE
T ss_pred HHHHHH-cCCCeEEEEec
Confidence 887776 89988776543
No 63
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.74 E-value=1.2e-17 Score=181.17 Aligned_cols=251 Identities=17% Similarity=0.162 Sum_probs=141.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecC-CCCCCcceeEe----------eCCeeeccceeeccCCCchHHHHHHH
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKE-DSLGGHAKTVT----------IDGVDLDLCFMVFNRVTYPNMMEFFE 69 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~-~~~GG~~~s~~----------~~G~~~d~G~~~~~~~~~~~~~~l~~ 69 (864)
+||+|||||++||+||+.|+++|++|+|||++ +++||++.|.+ ..|+.+|.|+++++ ...+.+.++++
T Consensus 45 ~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~-~~~~~~~~~~~ 123 (376)
T 2e1m_A 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLP-SFHPLTLALID 123 (376)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEE-TTCHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeec-chHHHHHHHHH
Confidence 58999999999999999999999999999999 99999999988 35789999999884 45777889999
Q ss_pred HcCCCccccccee---------------eEEecCCCceeec--------------------CCCCC--------Cchhhh
Q 002928 70 SLGVDMEISDMSF---------------SVSLDKGQGCEWS--------------------SRNGM--------SGLFAQ 106 (864)
Q Consensus 70 ~lG~~~~~~~~~~---------------~~~~~~~~~~~~~--------------------~~~~~--------~~~~~~ 106 (864)
++|+......... .....++...... ..... ...+..
T Consensus 124 ~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (376)
T 2e1m_A 124 KLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINE 203 (376)
T ss_dssp HTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHHHHHCTHHHHH
T ss_pred HcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccccccCHHHhcc
Confidence 9998765422110 0000111111000 00000 000000
Q ss_pred hhhcC------C--hHHHHHHHHHHhHHHH-----------HHHHHHhhccCCcCCCCccHHHHHH-hcCCCHHHHHHHH
Q 002928 107 KKNLL------N--PYFWQMLREIIKFNDD-----------VLSYLEDLENNADIDRNETLGQFVE-TRGYSELFQKAYL 166 (864)
Q Consensus 107 ~~~~~------~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~ 166 (864)
..... . ..+.+.+....+.... ...............+..|+.+|+. ..++++...+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~~~g~s~~~~~~~- 282 (376)
T 2e1m_A 204 GFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVEAI- 282 (376)
T ss_dssp HTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHHTSCCCHHHHHHH-
T ss_pred ccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhhccCCCHHHHHHH-
Confidence 00000 0 0011111111111000 0000000000000126789999998 788887766533
Q ss_pred hhhhhcccCCChhhhhcCCHHHHHHHHhhcCCCccCCCCcEEEecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCC
Q 002928 167 VPVCGSIWSCSSEKVMSCSAFSVLSFCRNHHALQIFGRPQWLTVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGE 246 (864)
Q Consensus 167 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~ 246 (864)
..+ +. .+.....+++..+... ........++.+.||+..|+++|++.+ +.+|++|++|++|++.++
T Consensus 283 ~~~----~~--~~~~~~~s~l~~l~~~-----~~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~~~V~~I~~~~~ 348 (376)
T 2e1m_A 283 GTI----EN--MTSRLHLAFFHSFLGR-----SDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMGQRMVRLEYYDP 348 (376)
T ss_dssp HHH----TT--CTTTTTSBHHHHHHHC-----SCSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECSEEEEEEEECCC
T ss_pred Hhh----cC--ccccchhhHHHHHHHh-----hhhccCCceEEECCcHHHHHHHHHHhc---CCcEEecCeEEEEEECCC
Confidence 111 11 1112233444433321 112245678999999999999999998 568999999999999888
Q ss_pred eEEEEECCCcEEecCEEEEcc
Q 002928 247 GRIEIRGDDFQRVYDGCIMAV 267 (864)
Q Consensus 247 ~~~V~~~~G~~~~ad~VV~A~ 267 (864)
++.|.+.+.......+|.+++
T Consensus 349 gv~v~~~~~~~~~g~~~~~~~ 369 (376)
T 2e1m_A 349 GRDGHHGELTGPGGPAVAIQT 369 (376)
T ss_dssp C-------------CCEEEEE
T ss_pred ceEEEeCCCcCCCCCeeEEEe
Confidence 876665443334556777775
No 64
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.73 E-value=1e-17 Score=179.32 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=129.3
Q ss_pred HcCCCCCCeEEEEcCCchHHHHHHH--HhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 002928 624 KARVSKGHEVLEIGCGWGTLAIEIV--KQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRII 701 (864)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la--~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~ 701 (864)
...++++.+|||||||+|.++..++ ..++++|+|+|+|+.+++.|++++...++.++++++++|+.+++.+++||+|+
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~ 192 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLT 192 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEE
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEE
Confidence 3446789999999999999999995 33688999999999999999999998888778999999999988448999999
Q ss_pred EchhhhhhChh-hHHHHHHHHHhccccCcEEEEEEecCCCccccccc-------CccchhhhcccCCC------CCCCHH
Q 002928 702 SCEMIEAVGHD-YMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR-------LSPGFIKEYIFPGG------CLPSLN 767 (864)
Q Consensus 702 s~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~~~~~~~~i~p~~------~~~~~~ 767 (864)
++.+++|+++. ....+++++.++|||||++++.++..+........ .......+++++.. .+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99999999533 34468999999999999999988765443211110 01112223333221 457899
Q ss_pred HHHHHHhcCCCcEEEEEEeccccH
Q 002928 768 RITSAMTSSSRLCVEDLENIGIHY 791 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~~~~~~y 791 (864)
++.+.+++ +||++++++....++
T Consensus 273 ~~~~~l~~-aGF~~v~~~~~~~~~ 295 (305)
T 3ocj_A 273 QTRAQLEE-AGFTDLRFEDDRARL 295 (305)
T ss_dssp HHHHHHHH-TTCEEEEEECCTTSS
T ss_pred HHHHHHHH-CCCEEEEEEcccCce
Confidence 99988887 999999988755443
No 65
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.73 E-value=3.7e-17 Score=166.02 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcccC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQD----HIRLYLCDYR 689 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~ 689 (864)
....+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...++++ +++++++|+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 344556666666677889999999999999999987 34799999999999999999988777654 8999999998
Q ss_pred CCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 690 QLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 690 ~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..+ .+++||+|++..+++|+++++...+++++.++|||||.++...
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 777 5689999999999999987777899999999999999666543
No 66
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.73 E-value=7.3e-18 Score=179.99 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=127.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcccCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ--DHIRLYLCDYRQLPK 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~~ 693 (864)
..+..+++.+..+++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .+++++++|+.+++.
T Consensus 70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 445566777765544 9999999999999999998 889999999999999999998876532 489999999999887
Q ss_pred CCCccEEEEc-hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC--------------ccch-----h
Q 002928 694 SNKYDRIISC-EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL--------------SPGF-----I 753 (864)
Q Consensus 694 ~~~fD~v~s~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--------------~~~~-----~ 753 (864)
+++||+|++. .+++|+++++...+++++.++|||||++++.++............ ...+ .
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEI 227 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccE
Confidence 7899998864 678888777789999999999999999999877643211000000 0000 0
Q ss_pred -hhcccCCC-------------CCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 754 -KEYIFPGG-------------CLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 754 -~~~i~p~~-------------~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
.-.+++.+ .+.+.+++.+.+++ +||+++.++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~-aGF~v~~~~~~~ 275 (299)
T 3g2m_A 228 QEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVR-SGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHH-TTCEEEEEEEEC
T ss_pred EEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHH-CCCEEEEEEecC
Confidence 00111111 14588999988887 999999998765
No 67
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.73 E-value=4.4e-17 Score=169.63 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 002928 610 LEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYR 689 (864)
Q Consensus 610 l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 689 (864)
+...+......+++.+...++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.... .+++++++|+.
T Consensus 74 ~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHH
Confidence 344455666788888888889999999999999999999875568999999999999999987543 47999999999
Q ss_pred CCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHH
Q 002928 690 QLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNR 768 (864)
Q Consensus 690 ~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 768 (864)
+++ ++++||+|++..+++|++++++..+++++.++|||||++++.+.......+. .. . .......+..+
T Consensus 151 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~-~-~~~~~~~~~~~ 220 (254)
T 1xtp_A 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--------VD-K-EDSSLTRSDIH 220 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--------EE-T-TTTEEEBCHHH
T ss_pred HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce--------ec-c-cCCcccCCHHH
Confidence 988 6689999999999999988789999999999999999999987643322110 00 0 01112347888
Q ss_pred HHHHHhcCCCcEEEEEEec
Q 002928 769 ITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 769 ~~~~l~~~~gf~v~~~~~~ 787 (864)
+.+.+.+ +||+++.++..
T Consensus 221 ~~~~l~~-aGf~~~~~~~~ 238 (254)
T 1xtp_A 221 YKRLFNE-SGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHHH-HTCCEEEEEEC
T ss_pred HHHHHHH-CCCEEEEeeec
Confidence 8888886 89999887764
No 68
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.73 E-value=7.8e-19 Score=178.25 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=116.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCC-HHHHHHH---HHHHHHcCCCCCeEEEEcccCCCCC--CCCccE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLS-EEQLKYA---EMKVKEAGLQDHIRLYLCDYRQLPK--SNKYDR 699 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s-~~~~~~a---~~~~~~~~l~~~v~~~~~d~~~~~~--~~~fD~ 699 (864)
.+++.+|||||||+|.++..++++ ++++|+|||+| +.|++.| ++++.+.+++ +++++++|+++++. .+.+|.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEE
Confidence 367889999999999999999975 78899999999 6666666 7777777775 89999999999972 244555
Q ss_pred EEEchhh----hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCH-----HHHH
Q 002928 700 IISCEMI----EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSL-----NRIT 770 (864)
Q Consensus 700 v~s~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~-----~~~~ 770 (864)
|.++..+ +|.. .+...++++++++|||||++++....... +.... ..... .| .++. .++.
T Consensus 101 i~~~~~~~~~~~~~~-~~~~~~l~~~~r~LkpGG~l~i~~~~~~~--~~~~~---~~~~~--~~---~~~~~~~~~~el~ 169 (225)
T 3p2e_A 101 ISILFPWGTLLEYVI-KPNRDILSNVADLAKKEAHFEFVTTYSDS--YEEAE---IKKRG--LP---LLSKAYFLSEQYK 169 (225)
T ss_dssp EEEESCCHHHHHHHH-TTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHH
T ss_pred EEEeCCCcHHhhhhh-cchHHHHHHHHHhcCCCcEEEEEEecccc--chhch---hhhcC--CC---CCChhhcchHHHH
Confidence 5554332 2221 12467899999999999999994322211 11100 00000 11 1122 2366
Q ss_pred HHHhcCCCcEEEEEEeccccHHHHH-HHHHHHHHHhHHHHHhhcCCHHHHH
Q 002928 771 SAMTSSSRLCVEDLENIGIHYYQTL-RCWRKNFLEKQSKIRALGFSEKFIR 820 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~~~y~~tl-~~w~~~~~~~~~~~~~~g~~~~~~r 820 (864)
+.+++ +||++.+++.++.+|..++ ..|. +....||+++|.|
T Consensus 170 ~~l~~-aGf~v~~~~~~~~~~~~~~~~~w~--------~~~~~~~~~~f~r 211 (225)
T 3p2e_A 170 AELSN-SGFRIDDVKELDNEYVKQFNSLWA--------KRLAFGRKRSFFR 211 (225)
T ss_dssp HHHHH-HTCEEEEEEEECHHHHTTCCSHHH--------HHHHHSSCCCEEE
T ss_pred HHHHH-cCCCeeeeeecCHHHHHHHHHHHh--------cccCccchhHHHH
Confidence 67775 8999999999999988765 3354 4445678888765
No 69
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.73 E-value=2.9e-17 Score=166.53 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcccCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQD----HIRLYLCDYRQ 690 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~~ 690 (864)
...+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+++++.|+++++..++++ +++++++|+..
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence 44556667777678899999999999999999997 34799999999999999999998777764 89999999977
Q ss_pred CC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 691 LP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 691 ~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.+ .+++||+|++..+++|+++++...+++++.++|||||.+++..
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 96 QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 76 5579999999999999987778999999999999999777644
No 70
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=4.7e-17 Score=169.90 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=123.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
.+....+++.+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++. .+++++++|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~ 92 (259)
T 2p35_A 19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKP 92 (259)
T ss_dssp GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCc
Confidence 345567888888889999999999999999999988 5889999999999999999871 379999999998876
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccc----ccCccchhhhcc---cCCCCCCCH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE----HRLSPGFIKEYI---FPGGCLPSL 766 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~i---~p~~~~~~~ 766 (864)
+++||+|++..+++|+ .++..+++++.++|||||++++.+.......... ......|..... .+...+++.
T Consensus 93 ~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T 2p35_A 93 AQKADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPP 170 (259)
T ss_dssp SSCEEEEEEESCGGGS--TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred cCCcCEEEEeCchhhC--CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCH
Confidence 6889999999999999 5689999999999999999999876432211000 000001111100 113456788
Q ss_pred HHHHHHHhcCCCcEEEEEE
Q 002928 767 NRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 767 ~~~~~~l~~~~gf~v~~~~ 785 (864)
+++.+.+.+ +||++...+
T Consensus 171 ~~~~~~l~~-aGf~v~~~~ 188 (259)
T 2p35_A 171 SDYFNALSP-KSSRVDVWH 188 (259)
T ss_dssp HHHHHHHGG-GEEEEEEEE
T ss_pred HHHHHHHHh-cCCceEEEE
Confidence 999888886 899865544
No 71
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.73 E-value=4.6e-17 Score=164.27 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=120.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+..++.. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. +++++++|+.+++.+++|
T Consensus 34 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~f 103 (211)
T 3e23_A 34 LTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAY 103 (211)
T ss_dssp HHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCE
T ss_pred HHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcE
Confidence 3444444 457889999999999999999997 889999999999999999886 477889999998877899
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
|+|++..+++|++.+++..+++++.++|||||++++............ ... .....+.+++.+.+++ +
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~l~~-a 171 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-------LAR----YYNYPSEEWLRARYAE-A 171 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-------TSC----EECCCCHHHHHHHHHH-H
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-------cch----hccCCCHHHHHHHHHh-C
Confidence 999999999999877899999999999999999999765433221110 111 1235688999888886 8
Q ss_pred C-cEEEEEEec
Q 002928 778 R-LCVEDLENI 787 (864)
Q Consensus 778 g-f~v~~~~~~ 787 (864)
| |+++.++..
T Consensus 172 G~f~~~~~~~~ 182 (211)
T 3e23_A 172 GTWASVAVESS 182 (211)
T ss_dssp CCCSEEEEEEE
T ss_pred CCcEEEEEEec
Confidence 9 999887754
No 72
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.72 E-value=1.9e-17 Score=182.76 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=119.7
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEcccCCC------
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEA-----G-L-QDHIRLYLCDYRQL------ 691 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-----~-l-~~~v~~~~~d~~~~------ 691 (864)
+.++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|+++++.. | + ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 568899999999999999999987 5779999999999999999988754 3 2 24899999999886
Q ss_pred C-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHH
Q 002928 692 P-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRIT 770 (864)
Q Consensus 692 ~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 770 (864)
+ ++++||+|+++.+++|+ .++..+++++.++|||||++++.++............ ... .+........+..++.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 235 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLS--TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQ-DPI--LYGECLGGALYLEDFR 235 (383)
T ss_dssp CCCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHH-CHH--HHHTTCTTCCBHHHHH
T ss_pred CCCCCCEEEEEEccchhcC--CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhh-hHH--HhhcccccCCCHHHHH
Confidence 6 67899999999999999 5689999999999999999999887654322111111 010 1111223456778888
Q ss_pred HHHhcCCCcEEEEEEe
Q 002928 771 SAMTSSSRLCVEDLEN 786 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~ 786 (864)
+.+.+ +||+++++..
T Consensus 236 ~ll~~-aGF~~v~~~~ 250 (383)
T 4fsd_A 236 RLVAE-AGFRDVRLVS 250 (383)
T ss_dssp HHHHH-TTCCCEEEEE
T ss_pred HHHHH-CCCceEEEEe
Confidence 88886 8998766544
No 73
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.72 E-value=1.3e-17 Score=172.32 Aligned_cols=166 Identities=11% Similarity=0.145 Sum_probs=128.0
Q ss_pred hccccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCC-CCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch
Q 002928 563 HISRKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKS-EHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWG 641 (864)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~-~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G 641 (864)
+..+..+++.-.+.+...|+...++|+..+...+..+..-|.. ..-...+...+.++.-...+.++++++|||||||+|
T Consensus 55 ~vl~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G 134 (298)
T 3fpf_A 55 HILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPL 134 (298)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSS
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCcc
Confidence 3444557778888999999999999998887765433211100 000111223344444456778999999999999999
Q ss_pred HHH-HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHH
Q 002928 642 TLA-IEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGC 720 (864)
Q Consensus 642 ~~~-~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~ 720 (864)
.++ ..+++.++++|+|+|+|++|++.|++++++.|+ ++++++++|+.+++ +++||+|++... + +++.+++++
T Consensus 135 ~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a~---~--~d~~~~l~e 207 (298)
T 3fpf_A 135 PLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAAL---A--EPKRRVFRN 207 (298)
T ss_dssp CHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECTT---C--SCHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECCC---c--cCHHHHHHH
Confidence 766 555655899999999999999999999999998 79999999999886 678999998654 3 567899999
Q ss_pred HHhccccCcEEEEEE
Q 002928 721 CESLLAEHGLLLLQF 735 (864)
Q Consensus 721 ~~~~LkpgG~l~i~~ 735 (864)
+.++|||||++++..
T Consensus 208 l~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 208 IHRYVDTETRIIYRT 222 (298)
T ss_dssp HHHHCCTTCEEEEEE
T ss_pred HHHHcCCCcEEEEEc
Confidence 999999999999965
No 74
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.72 E-value=7.7e-17 Score=170.22 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=122.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (864)
+.+++.+.+.++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++. .+++++++|+.+++.+++||
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcC
Confidence 3566777788899999999999999999999 5899999999999999998874 37899999999988668999
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc-----c-CCCCCCCHHHHHHH
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI-----F-PGGCLPSLNRITSA 772 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i-----~-p~~~~~~~~~~~~~ 772 (864)
+|++..+++|+ .++..+++++.++|||||++++......... .........+.+.- . ....+++..++.+.
T Consensus 120 ~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 120 AVFSNAMLHWV--KEPEAAIASIHQALKSGGRFVAEFGGKGNIK-YILEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp EEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECTTTTH-HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred EEEEcchhhhC--cCHHHHHHHHHHhcCCCcEEEEEecCCcchH-HHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 99999999999 5689999999999999999999776533210 00000000011110 0 11246688888888
Q ss_pred HhcCCCcEEEEEEec
Q 002928 773 MTSSSRLCVEDLENI 787 (864)
Q Consensus 773 l~~~~gf~v~~~~~~ 787 (864)
+.+ +||+++.++..
T Consensus 197 l~~-aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEK-QGFDVTYAALF 210 (279)
T ss_dssp HHH-HTEEEEEEEEE
T ss_pred HHH-cCCEEEEEEEe
Confidence 886 89999887654
No 75
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.72 E-value=8.4e-18 Score=173.53 Aligned_cols=147 Identities=16% Similarity=0.239 Sum_probs=118.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~ 706 (864)
+++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....+ ..+++++++|+.+++ ++++||+|++..++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 3688999999999999999988755699999999999999999987654 237999999999887 55689999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
+|++++....+++++.++|||||++++.+....... .+.. ..+....+..++.+.+.+ +||+++.++.
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~l~~-aGf~~~~~~~ 224 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV--ILDD---------VDSSVCRDLDVVRRIICS-AGLSLLAEER 224 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE--EEET---------TTTEEEEBHHHHHHHHHH-TTCCEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc--eecc---------cCCcccCCHHHHHHHHHH-cCCeEEEeee
Confidence 999876677999999999999999999887654310 0000 011123478888888886 8999998876
Q ss_pred c
Q 002928 787 I 787 (864)
Q Consensus 787 ~ 787 (864)
.
T Consensus 225 ~ 225 (241)
T 2ex4_A 225 Q 225 (241)
T ss_dssp C
T ss_pred c
Confidence 4
No 76
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.71 E-value=6.7e-17 Score=175.63 Aligned_cols=172 Identities=13% Similarity=0.170 Sum_probs=137.6
Q ss_pred HHHHHHHHHcCC--CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 616 RKVSLLIQKARV--SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
.....+++.++. .++.+|||||||+|.++..+++. ++.+++++|+| .+++.|++++...++.++++++.+|+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD 228 (335)
T ss_dssp HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 344567777777 78899999999999999999998 67899999999 999999999998888778999999998866
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccc-cCccchhhhcccCCCCCCCHHHHHH
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEH-RLSPGFIKEYIFPGGCLPSLNRITS 771 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~i~p~~~~~~~~~~~~ 771 (864)
..+.||+|++..+++|+++++...+++++.++|||||++++.+...+....... ....++......+++...+.+++.+
T Consensus 229 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 229 YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 334599999999999998888899999999999999999998877654321110 0011111112234677889999999
Q ss_pred HHhcCCCcEEEEEEeccc
Q 002928 772 AMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 772 ~l~~~~gf~v~~~~~~~~ 789 (864)
.+.+ +||+++++..+..
T Consensus 309 ll~~-aGf~~~~~~~~~~ 325 (335)
T 2r3s_A 309 MFSN-AGFSHSQLHSLPT 325 (335)
T ss_dssp HHHH-TTCSEEEEECCTT
T ss_pred HHHH-CCCCeeeEEECCC
Confidence 8887 8999998877643
No 77
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.71 E-value=2.9e-16 Score=156.72 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=121.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDR 699 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (864)
.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++.+++||+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCCCCCEEE
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCCCCCceE
Confidence 4556667677889999999999999999998 889999999999999999999888874 69999999998876678999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCc
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRL 779 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf 779 (864)
|++..+++|++.++...+++++.++|||||.+++.+........ .. .+.....+.+++.+.+.+ |
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~----~~--------~~~~~~~~~~~l~~~~~~---f 165 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP----CT--------VGFPFAFKEGELRRYYEG---W 165 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC----CC--------SCCSCCBCTTHHHHHTTT---S
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC----CC--------CCCCCccCHHHHHHHhcC---C
Confidence 99999999998778999999999999999998886654433211 00 111234467777766542 8
Q ss_pred EEEEEEec
Q 002928 780 CVEDLENI 787 (864)
Q Consensus 780 ~v~~~~~~ 787 (864)
+++..+..
T Consensus 166 ~~~~~~~~ 173 (199)
T 2xvm_A 166 ERVKYNED 173 (199)
T ss_dssp EEEEEECC
T ss_pred eEEEeccc
Confidence 88887653
No 78
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.71 E-value=1.2e-16 Score=164.77 Aligned_cols=146 Identities=19% Similarity=0.212 Sum_probs=114.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCCeEEEEcccC
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKE----------A------GLQDHIRLYLCDYR 689 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~----------~------~l~~~v~~~~~d~~ 689 (864)
...++.+|||+|||+|..+..|++. |.+|+|||+|+.+++.|+++... . ....+|+++++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 3467889999999999999999997 89999999999999999876531 0 01248999999999
Q ss_pred CCC-C-CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHH
Q 002928 690 QLP-K-SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLN 767 (864)
Q Consensus 690 ~~~-~-~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (864)
+++ . .++||+|++..+++|++.++...+++++.++|||||++++.++....... . .|. ...+.+
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----~---------g~~-~~~~~~ 209 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----A---------GPP-FYVPSA 209 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----C---------CSS-CCCCHH
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----C---------CCC-CCCCHH
Confidence 988 3 38999999999999998888899999999999999999876654322110 0 010 124678
Q ss_pred HHHHHHhcCCCcEEEEEEecc
Q 002928 768 RITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~~~~ 788 (864)
++.+.+.. +|+++.++...
T Consensus 210 el~~~l~~--~f~v~~~~~~~ 228 (252)
T 2gb4_A 210 ELKRLFGT--KCSMQCLEEVD 228 (252)
T ss_dssp HHHHHHTT--TEEEEEEEEEE
T ss_pred HHHHHhhC--CeEEEEEeccc
Confidence 88877764 59998877543
No 79
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.70 E-value=9.3e-17 Score=167.02 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=123.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
...+++.+...++.+|||||||+|.++..+++. +. +|+|+|+|+++++.|+++.. ..+++++++|+.+++ +++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~ 107 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPD 107 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTT
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCC
Confidence 345667777778999999999999999999998 54 99999999999999998864 348999999999988 678
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccc-------ccccCccch-hhhcccC--------
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCY-------DEHRLSPGF-IKEYIFP-------- 759 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~-~~~~i~p-------- 759 (864)
+||+|++..+++|+ +++..+++++.++|||||++++.......... ........+ ...|...
T Consensus 108 ~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 108 AYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFL 185 (253)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEET
T ss_pred CeEEEEEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeec
Confidence 99999999999999 67899999999999999999997543210000 000000000 0000000
Q ss_pred ----CCCCCCHHHHHHHHhcCCCcEEEEEEeccc
Q 002928 760 ----GGCLPSLNRITSAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 760 ----~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~ 789 (864)
.....+.+++.+.+.+ +||+++.+.....
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~-aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLK-NGFQINSVIEPEP 218 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHH-TTEEEEEEECCCC
T ss_pred cccCccEecCHHHHHHHHHH-cCCeeeeeecCCC
Confidence 0112388999988887 9999999987654
No 80
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.70 E-value=1.4e-16 Score=164.46 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=117.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~ 706 (864)
+++.+|||||||+|.++..+++. +++|+|+|+|+.+++.++++. ...+++++++|+.+++ ++++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 47889999999999999999998 889999999999999998874 2348999999999988 67899999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc-cCCCCCCCHHHHHHHHhcCCCcEEEEEE
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI-FPGGCLPSLNRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i-~p~~~~~~~~~~~~~l~~~~gf~v~~~~ 785 (864)
+|+ .++..+++++.++|||||++++.+......... ..+...+- .......+..++.+.+++ +||++++..
T Consensus 127 ~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~~~ 198 (242)
T 3l8d_A 127 EWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRE-----NSYPRLYGKDVVCNTMMPWEFEQLVKE-QGFKVVDGI 198 (242)
T ss_dssp TSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG-----GGGGGGGTCCCSSCCCCHHHHHHHHHH-TTEEEEEEE
T ss_pred hhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh-----hhhhhhccccccccCCCHHHHHHHHHH-cCCEEEEee
Confidence 999 567899999999999999999988654432211 11111111 112345678888888886 899999877
Q ss_pred ec
Q 002928 786 NI 787 (864)
Q Consensus 786 ~~ 787 (864)
.+
T Consensus 199 ~~ 200 (242)
T 3l8d_A 199 GV 200 (242)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 81
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.69 E-value=5.6e-16 Score=170.09 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=135.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
.....+++.++..++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++++...++.++|+++.+|+.+..+.
T Consensus 189 ~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~ 267 (369)
T 3gwz_A 189 TEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD 267 (369)
T ss_dssp HHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS
T ss_pred hhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC
Confidence 34567778888888899999999999999999998 7889999999 999999999999999888999999999732233
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchh--hhcccCCCCCCCHHHHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFI--KEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~i~p~~~~~~~~~~~~~ 772 (864)
+||+|++..++++++++....++++++++|||||++++.+...+...... ..+. .....+++...+.+++.+.
T Consensus 268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~d~~~~~~~~g~~~t~~e~~~l 342 (369)
T 3gwz_A 268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS----TLFVDLLLLVLVGGAERSESEFAAL 342 (369)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH----HHHHHHHHHHHHSCCCBCHHHHHHH
T ss_pred -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc----hhHhhHHHHhhcCCccCCHHHHHHH
Confidence 89999999999999887777999999999999999999988776543211 1111 1122356778899999888
Q ss_pred HhcCCCcEEEEEEe
Q 002928 773 MTSSSRLCVEDLEN 786 (864)
Q Consensus 773 l~~~~gf~v~~~~~ 786 (864)
+++ +||+++++..
T Consensus 343 l~~-aGf~~~~~~~ 355 (369)
T 3gwz_A 343 LEK-SGLRVERSLP 355 (369)
T ss_dssp HHT-TTEEEEEEEE
T ss_pred HHH-CCCeEEEEEE
Confidence 886 9999999876
No 82
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.69 E-value=2.9e-16 Score=170.18 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=131.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
..+++.++..+..+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++.+.++.++|+++.+|+.+..+ .+|
T Consensus 159 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p-~~~ 236 (332)
T 3i53_A 159 TGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP-AGA 236 (332)
T ss_dssp TTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-CSC
T ss_pred HHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC-CCC
Confidence 34555566667789999999999999999988 7889999999 99999999999999988899999999973213 389
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
|+|++..++||++++...+++++++++|||||++++.+...++. ... ...+.. .....++...+.+++.+.+++ +
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~-~~~d~~-~~~~~~~~~~t~~e~~~ll~~-a 311 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HAG-TGMDLR-MLTYFGGKERSLAELGELAAQ-A 311 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----CC-HHHHHH-HHHHHSCCCCCHHHHHHHHHH-T
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Ccc-HHHHHH-HHhhCCCCCCCHHHHHHHHHH-C
Confidence 99999999999988778999999999999999999998876654 110 011111 112356777899999988886 9
Q ss_pred CcEEEEEEeccc
Q 002928 778 RLCVEDLENIGI 789 (864)
Q Consensus 778 gf~v~~~~~~~~ 789 (864)
||+++++...+.
T Consensus 312 Gf~~~~~~~~~~ 323 (332)
T 3i53_A 312 GLAVRAAHPISY 323 (332)
T ss_dssp TEEEEEEEECSS
T ss_pred CCEEEEEEECCC
Confidence 999998877653
No 83
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.69 E-value=3.4e-17 Score=171.10 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (864)
...+.+++.+.++++.+|||||||+|.++..+++ ++++|+|+|+|+.|++.++++. +++++++|+.+++ ++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 4556788888888999999999999999999998 4899999999999999887643 7999999999988 67
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF-PGGCLPSLNRITSAM 773 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~l 773 (864)
++||+|++..+++|+ +++..+++++.++|| ||.+++.++....... .+. ...+..... .+..+++..++. .+
T Consensus 93 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~l 165 (261)
T 3ege_A 93 KSVDGVISILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWL--YDYFPFLWEDALRFLPLDEQIN-LL 165 (261)
T ss_dssp TCBSEEEEESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGG--GGTCHHHHHHHHTSCCHHHHHH-HH
T ss_pred CCEeEEEEcchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHH--HHHHHHHhhhhhhhCCCHHHHH-HH
Confidence 899999999999999 678999999999999 9999998775432110 000 011110000 113456777777 77
Q ss_pred hcCCCcEEEEEEec
Q 002928 774 TSSSRLCVEDLENI 787 (864)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (864)
++ +||+++.++.+
T Consensus 166 ~~-aGF~~v~~~~~ 178 (261)
T 3ege_A 166 QE-NTKRRVEAIPF 178 (261)
T ss_dssp HH-HHCSEEEEEEC
T ss_pred HH-cCCCceeEEEe
Confidence 75 89988887775
No 84
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.69 E-value=5.4e-17 Score=165.70 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=118.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C-
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL---P- 692 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~- 692 (864)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++++.++|+.++ +
T Consensus 40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~ 111 (227)
T 3e8s_A 40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV 111 (227)
T ss_dssp HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS
T ss_pred ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc
Confidence 3345666666667799999999999999999998 88999999999999999987 2678899998776 3
Q ss_pred -CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc--c------CCCCC
Q 002928 693 -KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI--F------PGGCL 763 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i--~------p~~~~ 763 (864)
.+++||+|++..+++ . .++..++++++++|||||++++.++.........+. ..|..... + .....
T Consensus 112 ~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 186 (227)
T 3e8s_A 112 PVGKDYDLICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ--DGWREESFAGFAGDWQPMPWYF 186 (227)
T ss_dssp CCCCCEEEEEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS--CEEEEECCTTSSSCCCCEEEEE
T ss_pred ccCCCccEEEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccc--cccchhhhhccccCcccceEEE
Confidence 445699999999999 4 567899999999999999999988754332211111 11111000 0 01234
Q ss_pred CCHHHHHHHHhcCCCcEEEEEEe
Q 002928 764 PSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
.+.+++.+.+++ +||++++++.
T Consensus 187 ~~~~~~~~~l~~-aGf~~~~~~~ 208 (227)
T 3e8s_A 187 RTLASWLNALDM-AGLRLVSLQE 208 (227)
T ss_dssp CCHHHHHHHHHH-TTEEEEEEEC
T ss_pred ecHHHHHHHHHH-cCCeEEEEec
Confidence 688999988887 9999999876
No 85
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.68 E-value=1.2e-16 Score=169.18 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=122.8
Q ss_pred HHHHHHHHc-CCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 617 KVSLLIQKA-RVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 617 ~~~~~~~~l-~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
.+..+++.+ .+.++.+|||||||+|.++..+++. + +++|+|+|+|+.+++.|++++...+. +++++++|+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc
Confidence 344555555 5678899999999999999999987 4 58999999999999999999887664 89999999999886
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC----Ccccc-----cccCccchh---hh-cccCC
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP----DQCYD-----EHRLSPGFI---KE-YIFPG 760 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~-----~~~~~~~~~---~~-~i~p~ 760 (864)
+++||+|++..+++|+ .++..+++++.++|||||.+++.++... ..... .......|. .. ..-.+
T Consensus 87 ~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG 164 (284)
T ss_dssp SSCEEEEEEESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC
T ss_pred CCCeeEEEECChhhcC--CCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc
Confidence 6799999999999999 5679999999999999999999876510 00000 000011111 10 01123
Q ss_pred CCCCCHHHHHHHHhcCCCcEEEEEE
Q 002928 761 GCLPSLNRITSAMTSSSRLCVEDLE 785 (864)
Q Consensus 761 ~~~~~~~~~~~~l~~~~gf~v~~~~ 785 (864)
...++..++.+.+++ +||+.+.+.
T Consensus 165 ~~~~~~~~l~~~l~~-aGF~~v~~~ 188 (284)
T 3gu3_A 165 KDGNIGMKIPIYLSE-LGVKNIECR 188 (284)
T ss_dssp CCTTGGGTHHHHHHH-TTCEEEEEE
T ss_pred ccccHHHHHHHHHHH-cCCCeEEEE
Confidence 445566677777776 999988763
No 86
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.68 E-value=1.6e-16 Score=166.22 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch-hh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE-MI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~-~~ 706 (864)
+++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. +++++++|+.+++.+++||+|++.. ++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVTCMFSSI 121 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEEEcCchh
Confidence 46789999999999999999997 7899999999999999998743 7999999999988678999999998 99
Q ss_pred hhhCh-hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 707 EAVGH-DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 707 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+|++. ++...+++++.++|||||++++.++..+.
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 99964 47889999999999999999997654433
No 87
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.68 E-value=8.6e-17 Score=168.00 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGL--------------------------- 677 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l--------------------------- 677 (864)
+..++.+|||||||+|.++..++.. ++ +|+|+|+|+.|++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4568899999999999888877765 54 799999999999999987654320
Q ss_pred -CCCeE-EEEcccCCC-C----CCCCccEEEEchhhhhhC--hhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC
Q 002928 678 -QDHIR-LYLCDYRQL-P----KSNKYDRIISCEMIEAVG--HDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL 748 (864)
Q Consensus 678 -~~~v~-~~~~d~~~~-~----~~~~fD~v~s~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 748 (864)
..++. ++++|+.+. + ..++||+|+++.++||+. .+++..++++++++|||||+|++.++..... +.
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~~---- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YM---- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EE----
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-ce----
Confidence 01344 899998874 2 256899999999999973 2567899999999999999999987543221 10
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 749 SPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
.....++ ....+.+++.+.+.+ +||++++++...
T Consensus 206 ----~g~~~~~-~~~~~~~~l~~~l~~-aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ----VGKREFS-CVALEKGEVEQAVLD-AGFDIEQLLHSP 239 (263)
T ss_dssp ----ETTEEEE-CCCCCHHHHHHHHHH-TTEEEEEEEEEC
T ss_pred ----eCCeEee-ccccCHHHHHHHHHH-CCCEEEEEeecc
Confidence 0111122 123478888888886 899999888764
No 88
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.68 E-value=2.8e-16 Score=171.85 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=134.7
Q ss_pred HHHHHHHcCCCC-CCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C
Q 002928 618 VSLLIQKARVSK-GHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--K 693 (864)
Q Consensus 618 ~~~~~~~l~~~~-~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~ 693 (864)
+..+++.+++.+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+.+ .
T Consensus 167 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 167 MVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 346777777777 899999999999999999998 6789999999 8899999999999888888999999998875 5
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccccc-CccchhhhcccCCCCCCCHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR-LSPGFIKEYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (864)
++.||+|++..++||+++++...++++++++|||||++++.+...+........ ...++......+++...+.+++.+.
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 577999999999999988888999999999999999999998876654321110 0111111112467778899999888
Q ss_pred HhcCCCcEEEEE
Q 002928 773 MTSSSRLCVEDL 784 (864)
Q Consensus 773 l~~~~gf~v~~~ 784 (864)
+++ +||++++.
T Consensus 326 l~~-aGf~~~~~ 336 (352)
T 3mcz_A 326 VRD-AGLAVGER 336 (352)
T ss_dssp HHH-TTCEEEEE
T ss_pred HHH-CCCceeee
Confidence 886 99999874
No 89
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.67 E-value=2.6e-16 Score=161.55 Aligned_cols=159 Identities=16% Similarity=0.227 Sum_probs=121.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCCCC-CCCCccEEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGL----QDHIRLYLCDYRQLP-KSNKYDRII 701 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~-~~~~fD~v~ 701 (864)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....++ .++++++++|+.+++ ++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 357889999999999999999998 88999999999999999999877665 236899999999988 678999999
Q ss_pred EchhhhhhCh-hhHHHHHHHHHhccccCcEEEEEEecCCCccccccc----------Cccchhhhccc-----CCCCCCC
Q 002928 702 SCEMIEAVGH-DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR----------LSPGFIKEYIF-----PGGCLPS 765 (864)
Q Consensus 702 s~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----------~~~~~~~~~i~-----p~~~~~~ 765 (864)
+..+++|+++ +....+++++.++|||||++++.++........... ....+...... ......+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 9999999953 334589999999999999999988765322100000 00000000000 0013568
Q ss_pred HHHHHHHHhcCCCcEEEEEEec
Q 002928 766 LNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 766 ~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
.+++.+.+++ +||+++.++..
T Consensus 187 ~~~l~~ll~~-aGf~~~~~~~~ 207 (235)
T 3sm3_A 187 EKELVFLLTD-CRFEIDYFRVK 207 (235)
T ss_dssp HHHHHHHHHT-TTEEEEEEEEE
T ss_pred HHHHHHHHHH-cCCEEEEEEec
Confidence 8999888886 99999988754
No 90
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.67 E-value=2.4e-17 Score=167.23 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=123.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHH----HHHcCCCCCeEEEEcccCCCC-C
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMK----VKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~----~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
..++.+.++++.+|||||||+|.++..+++. ++++|+|+|+|++|++.+.++ ....+++ +++++++|+.+++ .
T Consensus 18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSC
T ss_pred HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCC
Confidence 4455566788999999999999999999998 578999999999988864333 3345554 8999999999988 4
Q ss_pred CCCccEEEEch---hhh--hhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCC-CHH
Q 002928 694 SNKYDRIISCE---MIE--AVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLP-SLN 767 (864)
Q Consensus 694 ~~~fD~v~s~~---~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~-~~~ 767 (864)
+++ |.|+... ..+ |+ .++..+++++.++|||||++++........ .....+. -.|..... ..+
T Consensus 97 ~~~-d~v~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~ 165 (218)
T 3mq2_A 97 SGV-GELHVLMPWGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVALNLHAWR------PSVPEVG--EHPEPTPDSADE 165 (218)
T ss_dssp CCE-EEEEEESCCHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEEEGGGBT------TBCGGGT--TCCCCCHHHHHH
T ss_pred CCC-CEEEEEccchhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEecccccc------ccccccc--cCCccchHHHHH
Confidence 444 6666433 332 66 445899999999999999999954221110 0000011 01111100 123
Q ss_pred HHHHHHhcCCCcEEEEEEeccccHHHHH-HHHHHHHHHhHHHHHhh
Q 002928 768 RITSAMTSSSRLCVEDLENIGIHYYQTL-RCWRKNFLEKQSKIRAL 812 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~~~~~~y~~tl-~~w~~~~~~~~~~~~~~ 812 (864)
.+...+.+ +||++.+++.+..++..++ ..|.+++...++++...
T Consensus 166 ~l~~~l~~-aGf~i~~~~~~~~~~~~~~~~~w~~~~~~~r~~~~~~ 210 (218)
T 3mq2_A 166 WLAPRYAE-AGWKLADCRYLEPEEVAGLETSWTRRLHSSRDRFDVL 210 (218)
T ss_dssp HHHHHHHH-TTEEEEEEEEECHHHHHHTCCTHHHHHTTCCSSCSEE
T ss_pred HHHHHHHH-cCCCceeeeccchhhhhhhHHHHHHHHcccccceeeE
Confidence 35556665 8999999999988887655 77998887766655443
No 91
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.67 E-value=5e-16 Score=160.67 Aligned_cols=107 Identities=26% Similarity=0.375 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch-hh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE-MI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~-~~ 706 (864)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++ +++++++|+.+++..++||+|++.. ++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceEEEEcCccc
Confidence 37789999999999999999997 88999999999999999999988775 7999999999987448999999998 99
Q ss_pred hhhC-hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 707 EAVG-HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 707 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+|++ .+++..+++++.++|||||++++....
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9994 357899999999999999999986543
No 92
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.67 E-value=3.5e-16 Score=157.54 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=115.8
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
..++.+|||+|||+|.++..++...+.+|+|+|+|+++++.|++++...+. +++++++|+.+++ ++++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCCCceeEEEEcCh
Confidence 457889999999999985444444588999999999999999999887663 7999999999988 6789999999999
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccc--hhh-hcccC-CCCCCCHHHHHHHHhcCCCcEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPG--FIK-EYIFP-GGCLPSLNRITSAMTSSSRLCV 781 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~-~~i~p-~~~~~~~~~~~~~l~~~~gf~v 781 (864)
++|++.+++..+++++.++|||||++++.+++.++..+........ +.. ....| ...+.+.+++.+.+.+ .||..
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~g~~~ 177 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD-MKVLF 177 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT-SEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhh-cCcee
Confidence 9999878899999999999999999999988765533211000000 000 00001 1134567777776664 78876
Q ss_pred EEEE
Q 002928 782 EDLE 785 (864)
Q Consensus 782 ~~~~ 785 (864)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5543
No 93
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.67 E-value=1.3e-15 Score=161.53 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=117.6
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRI 700 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v 700 (864)
+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++++|+.+++.+++||+|
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEE
Confidence 334444447889999999999999999998 88999999999999999999998887 899999999988767899999
Q ss_pred EEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcE
Q 002928 701 ISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 701 ~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~ 780 (864)
++..+++|+++++...+++++.++|||||.+++........... . .+.....+..++.+.+. +|+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~--------~~~~~~~~~~~l~~~~~---~~~ 253 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC----P--------LPFSFTFAENELKEYYK---DWE 253 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----S--------SCCSCCBCTTHHHHHTT---TSE
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC----C--------CCccccCCHHHHHHHhc---CCE
Confidence 99999999988889999999999999999988865543322100 0 11123345666665543 488
Q ss_pred EEEEEe
Q 002928 781 VEDLEN 786 (864)
Q Consensus 781 v~~~~~ 786 (864)
+...+.
T Consensus 254 ~~~~~~ 259 (286)
T 3m70_A 254 FLEYNE 259 (286)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 887754
No 94
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.67 E-value=6.2e-16 Score=170.70 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=130.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+.+++.+.++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++|+++.+|+.+..+ ..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-CCC
Confidence 46677777888999999999999999999998 6789999999 99999999999998988899999999876212 349
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe--cCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhc
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI--SVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTS 775 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~ 775 (864)
|+|++..+++|++++....++++++++|||||++++.++ ..++..........+. ....++++...+.+++.+.+++
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~ 328 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDL-RMLTFMGGRVRTRDEVVDLAGS 328 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHH-HHHHHHSCCCCCHHHHHHHHHT
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcch-HHHHhCCCcCCCHHHHHHHHHH
Confidence 999999999999877677999999999999999999887 5443211111100111 1112346777899999888886
Q ss_pred CCCcEEEEEEeccc
Q 002928 776 SSRLCVEDLENIGI 789 (864)
Q Consensus 776 ~~gf~v~~~~~~~~ 789 (864)
+||+++.+...+.
T Consensus 329 -aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 329 -AGLALASERTSGS 341 (374)
T ss_dssp -TTEEEEEEEEECC
T ss_pred -CCCceEEEEECCC
Confidence 9999998877653
No 95
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.67 E-value=7.6e-17 Score=180.55 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=127.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EE
Q 002928 606 EHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIR-LY 684 (864)
Q Consensus 606 ~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~-~~ 684 (864)
....+.+.+.+..+.+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++ +++.... +.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~ 158 (416)
T 4e2x_A 84 GSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFE 158 (416)
T ss_dssp GCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCS
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeec
Confidence 344567777888899999999999999999999999999999997 88999999999999999876 3321111 22
Q ss_pred EcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCC
Q 002928 685 LCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCL 763 (864)
Q Consensus 685 ~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~ 763 (864)
..+..+++ ++++||+|++.++++|+ .++..++++++++|||||++++......... ....| .....++..+
T Consensus 159 ~~~~~~l~~~~~~fD~I~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~~~~~-~~~~~~~~~~ 230 (416)
T 4e2x_A 159 KATADDVRRTEGPANVIYAANTLCHI--PYVQSVLEGVDALLAPDGVFVFEDPYLGDIV-----AKTSF-DQIFDEHFFL 230 (416)
T ss_dssp HHHHHHHHHHHCCEEEEEEESCGGGC--TTHHHHHHHHHHHEEEEEEEEEEEECHHHHH-----HHTCG-GGCSTTCCEE
T ss_pred hhhHhhcccCCCCEEEEEECChHHhc--CCHHHHHHHHHHHcCCCeEEEEEeCChHHhh-----hhcch-hhhhhhhhhc
Confidence 23344444 45899999999999999 5789999999999999999999765422110 00011 1111234456
Q ss_pred CCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 764 PSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
++..++.+.+++ +||++++++.+.
T Consensus 231 ~s~~~l~~ll~~-aGf~~~~~~~~~ 254 (416)
T 4e2x_A 231 FSATSVQGMAQR-CGFELVDVQRLP 254 (416)
T ss_dssp CCHHHHHHHHHH-TTEEEEEEEEEC
T ss_pred CCHHHHHHHHHH-cCCEEEEEEEcc
Confidence 788899888886 999999988754
No 96
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.67 E-value=9.7e-16 Score=156.44 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (864)
...+.+++.+ +++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++....+ .+++++++|+.+++ ++
T Consensus 27 ~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 27 TLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFED 101 (227)
T ss_dssp HHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCT
T ss_pred HHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCC
Confidence 3344444443 45889999999999999999987 5699999999999999999988776 48999999999987 66
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++||+|++..++++...+++..+++++.++|||||++++.+..
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 7999999999965555578899999999999999999998765
No 97
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.66 E-value=2.6e-16 Score=167.06 Aligned_cols=198 Identities=19% Similarity=0.137 Sum_probs=129.7
Q ss_pred HHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCH---HHHHHHHHHHHHHHcCC--CCCCeEEEEcCCchHHHH
Q 002928 571 TQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDL---EVAQMRKVSLLIQKARV--SKGHEVLEIGCGWGTLAI 645 (864)
Q Consensus 571 ~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l---~~aq~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~ 645 (864)
....+.++.+||..+. ..|...+|....... .+.+...+..+.+.+.. .++.+|||||||+|..+.
T Consensus 17 ~~~~~~~~~~y~~~~~---------~~y~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~ 87 (289)
T 2g72_A 17 APGQAAVASAYQRFEP---------RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQL 87 (289)
T ss_dssp CHHHHHHHHHGGGCCH---------HHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGG
T ss_pred hhHHHHHHHHHhccCH---------HHHHHHHhcCcccchhhhhHHHHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHH
Confidence 3456777888875221 023333333222111 11333344455555532 378899999999999655
Q ss_pred HHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-----------------CCCC------------CeEEEEcccCC-CC---
Q 002928 646 EIVKQTGCKYTGITLSEEQLKYAEMKVKEA-----------------GLQD------------HIRLYLCDYRQ-LP--- 692 (864)
Q Consensus 646 ~la~~~~~~v~gid~s~~~~~~a~~~~~~~-----------------~l~~------------~v~~~~~d~~~-~~--- 692 (864)
.++...+.+|+|+|+|++|++.|++++++. +... .++++++|+.+ ++
T Consensus 88 l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 167 (289)
T 2g72_A 88 LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGA 167 (289)
T ss_dssp TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCS
T ss_pred HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccc
Confidence 555545789999999999999999865421 1000 15688889887 44
Q ss_pred ---CCCCccEEEEchhhhhhCh--hhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHH
Q 002928 693 ---KSNKYDRIISCEMIEAVGH--DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLN 767 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (864)
++++||+|+++.+++|+.. +++..+++++.++|||||++++....... .+.. ....++ ....+.+
T Consensus 168 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-~~~~--------~~~~~~-~~~~~~~ 237 (289)
T 2g72_A 168 GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-WYLA--------GEARLT-VVPVSEE 237 (289)
T ss_dssp SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-EEEE--------TTEEEE-CCCCCHH
T ss_pred cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-eEEc--------CCeeee-eccCCHH
Confidence 2356999999999999543 47899999999999999999997543211 1000 000011 2346788
Q ss_pred HHHHHHhcCCCcEEEEEEecc
Q 002928 768 RITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 768 ~~~~~l~~~~gf~v~~~~~~~ 788 (864)
++.+.+.+ +||+++.++.+.
T Consensus 238 ~l~~~l~~-aGf~~~~~~~~~ 257 (289)
T 2g72_A 238 EVREALVR-SGYKVRDLRTYI 257 (289)
T ss_dssp HHHHHHHH-TTEEEEEEEEEE
T ss_pred HHHHHHHH-cCCeEEEeeEee
Confidence 99888886 899999988765
No 98
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.66 E-value=5.5e-16 Score=160.07 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=120.8
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKY 697 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (864)
.+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++... .+++++++|+.+++ ++++|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCc
Confidence 4566677778899999999999999999997 66 999999999999999987542 37999999999887 57899
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC--cccccc--cC-cc-c-hhhhcc---------c--C
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD--QCYDEH--RL-SP-G-FIKEYI---------F--P 759 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~~--~~-~~-~-~~~~~i---------~--p 759 (864)
|+|++..+++|+ +++..+++++.++|||||++++.+..... .....+ .. .. . .+..+. + +
T Consensus 109 D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 109 DLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred eEEEEecccccc--chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 999999999999 56899999999999999999997653210 000000 00 00 0 000010 0 0
Q ss_pred -CCCCCCHHHHHHHHhcCCCcEEEEEEeccc
Q 002928 760 -GGCLPSLNRITSAMTSSSRLCVEDLENIGI 789 (864)
Q Consensus 760 -~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~ 789 (864)
.....+.+++.+.+++ +||+++.++....
T Consensus 187 ~~~~~~t~~~~~~~l~~-aGF~~~~~~~~~~ 216 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIR-SGFAIEHVEEFCP 216 (243)
T ss_dssp CCEEECCHHHHHHHHHH-TTCEEEEEEECCC
T ss_pred eEEEeccHHHHHHHHHH-cCCEeeeeccCCC
Confidence 0122478889888886 9999999887654
No 99
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.66 E-value=5.2e-16 Score=169.99 Aligned_cols=157 Identities=12% Similarity=0.140 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--CCCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL--PKSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~~~fD~v~s~~ 704 (864)
....+|||||||+|.++..++++ ++.+++++|+ +++++.|++++++.++.++|+++.+|+.+. |.+++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 46689999999999999999998 7889999999 999999999998888877999999999875 3237899999999
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhh----cccCCCCCCCHHHHHHHHhcCCCcE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKE----YIFPGGCLPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----~i~p~~~~~~~~~~~~~l~~~~gf~ 780 (864)
++|++++++...++++++++|||||++++.+...+................ ....++...+.+++.+.+++ +||+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~-AGf~ 335 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN-AGLE 335 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT-TTEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH-cCCe
Confidence 999999888889999999999999999998877655432110000000111 11234566789999888886 8999
Q ss_pred EEEEEe
Q 002928 781 VEDLEN 786 (864)
Q Consensus 781 v~~~~~ 786 (864)
++++..
T Consensus 336 ~v~~~~ 341 (363)
T 3dp7_A 336 VEEIQD 341 (363)
T ss_dssp ESCCCC
T ss_pred EEEEEe
Confidence 887653
No 100
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.66 E-value=5.3e-16 Score=166.67 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=127.8
Q ss_pred HHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcccC
Q 002928 618 VSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAG------LQDHIRLYLCDYR 689 (864)
Q Consensus 618 ~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~------l~~~v~~~~~d~~ 689 (864)
++.+++.+. ++++.+|||||||+|.++..+++..+.+|+|+|+|+++++.|+++....+ ...+++++++|+.
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~ 100 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS 100 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence 344444443 24788999999999999999998767899999999999999999987642 2237999999998
Q ss_pred CCC-------CCCCccEEEEchhhhhh--ChhhHHHHHHHHHhccccCcEEEEEEecCCCc-----------c-------
Q 002928 690 QLP-------KSNKYDRIISCEMIEAV--GHDYMEEFFGCCESLLAEHGLLLLQFISVPDQ-----------C------- 742 (864)
Q Consensus 690 ~~~-------~~~~fD~v~s~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~------- 742 (864)
+++ ++++||+|++..+++|+ +.++...+++++.++|||||.+++.++..... .
T Consensus 101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 180 (313)
T 3bgv_A 101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180 (313)
T ss_dssp TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEE
T ss_pred ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEE
Confidence 864 24589999999999987 44578899999999999999999987643110 0
Q ss_pred -cccccCccchhhhccc---CC----CCCCCHHHHHHHHhcCCCcEEEEEEeccccHHHHHHHHH
Q 002928 743 -YDEHRLSPGFIKEYIF---PG----GCLPSLNRITSAMTSSSRLCVEDLENIGIHYYQTLRCWR 799 (864)
Q Consensus 743 -~~~~~~~~~~~~~~i~---p~----~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (864)
+........+..+|-| +. ....+..++.+.+.+ .||+++...++...+......|+
T Consensus 181 ~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~-~G~~~v~~~~f~~~g~~~~~~~r 244 (313)
T 3bgv_A 181 KFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKK-YNMKLVYKKTFLEFYEEKIKNNE 244 (313)
T ss_dssp EESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGG-GTEEEEEEEEHHHHHHHHTTSHH
T ss_pred EeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHH-cCcEEEEecCHHHHHHHhccchh
Confidence 0000011112222222 11 123567777777775 99999999988766666554443
No 101
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.3e-16 Score=164.03 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=97.5
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCC-CC------
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDHIRLYLCDYRQLP-KS------ 694 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~-~~------ 694 (864)
+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++.. +...+++++++|+++++ .+
T Consensus 32 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 32 YHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp HCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred HhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccC
Confidence 33468899999999999999999973 5889999999999999999999886 45569999999999987 44
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++||+|++..+++|+ ++..+++++.++|||||.+++.++.
T Consensus 112 ~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 112 QKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp SCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 799999999999999 6899999999999999999996554
No 102
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.66 E-value=2.2e-16 Score=153.36 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=115.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (864)
+.+++.+.++++.+|||||||+|.++..+++.. .+|+|+|+|+++++.++++ .+++++.++| ..+ ++++||
T Consensus 7 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~~-~~~~~D 77 (170)
T 3i9f_A 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP-KEI-PDNSVD 77 (170)
T ss_dssp TTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GGS-CTTCEE
T ss_pred HHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CCC-CCCceE
Confidence 356667778899999999999999999999984 5999999999999999987 2389999999 222 567999
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSR 778 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~g 778 (864)
+|++..+++|+ +++..+++++.++|||||++++.++......... |.....+.+++.+.++ |
T Consensus 78 ~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~---G 139 (170)
T 3i9f_A 78 FILFANSFHDM--DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP-------------PLSIRMDEKDYMGWFS---N 139 (170)
T ss_dssp EEEEESCSTTC--SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-------------CGGGCCCHHHHHHHTT---T
T ss_pred EEEEccchhcc--cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc-------------hHhhhcCHHHHHHHHh---C
Confidence 99999999999 5689999999999999999999887654422110 1112357788877665 9
Q ss_pred cEEEEEEeccc
Q 002928 779 LCVEDLENIGI 789 (864)
Q Consensus 779 f~v~~~~~~~~ 789 (864)
|++++....+.
T Consensus 140 f~~~~~~~~~~ 150 (170)
T 3i9f_A 140 FVVEKRFNPTP 150 (170)
T ss_dssp EEEEEEECSST
T ss_pred cEEEEccCCCC
Confidence 99999887763
No 103
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.65 E-value=5.4e-17 Score=176.35 Aligned_cols=177 Identities=22% Similarity=0.192 Sum_probs=137.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
.+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++++|+++++.+++|
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 356777777788999999999999999999997446999999996 8999999999999988999999999998744789
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCc------ccccccCccchhhhcccCCCCCCCHHHHHH
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQ------CYDEHRLSPGFIKEYIFPGGCLPSLNRITS 771 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~ 771 (864)
|+|++..+++|+..+.....+.+++++|||||++++...+.... .+........++...++|+..++++.++..
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~ 197 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAV 197 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHH
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHH
Confidence 99999999999987778889999999999999998754332110 000000112344445789999998887753
Q ss_pred HHhcCCCc--EEEEEEeccccHHHHHHHHH
Q 002928 772 AMTSSSRL--CVEDLENIGIHYYQTLRCWR 799 (864)
Q Consensus 772 ~l~~~~gf--~v~~~~~~~~~y~~tl~~w~ 799 (864)
. .+| .+.+.++++.+|.+++..|.
T Consensus 198 ~----~~f~~p~~d~~~~~~~~~~~~~~~~ 223 (348)
T 2y1w_A 198 D----EYFRQPVVDTFDIRILMAKSVKYTV 223 (348)
T ss_dssp H----HHHTSCEEECCCGGGBCBCCEEEEE
T ss_pred h----hhccCCeEEeECCeeecCcceEEEE
Confidence 2 233 46777788888888877776
No 104
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.65 E-value=6.5e-16 Score=157.96 Aligned_cols=174 Identities=16% Similarity=0.230 Sum_probs=129.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-CCCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ--LP-KSNK 696 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~~~ 696 (864)
.+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. .+++++|+.+ .+ ++++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence 4555555 67889999999999999999998 799999999999999998652 3789999987 34 5679
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchh---hhccc-CCCCCCCHHHHHHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFI---KEYIF-PGGCLPSLNRITSA 772 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~i~-p~~~~~~~~~~~~~ 772 (864)
||+|++..+++|+ .++..+++++.++|||||.+++..................|. ..... ......+..++.+.
T Consensus 94 fD~v~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 94 FDCVIFGDVLEHL--FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp EEEEEEESCGGGS--SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred cCEEEECChhhhc--CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 9999999999999 457899999999999999999977553321000000000000 00001 12345688999888
Q ss_pred HhcCCCcEEEEEEeccccHHHHHHHHHHHHHHhHH
Q 002928 773 MTSSSRLCVEDLENIGIHYYQTLRCWRKNFLEKQS 807 (864)
Q Consensus 773 l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~ 807 (864)
+.+ +||+++.++.+...+ .....|.+++.....
T Consensus 172 l~~-~Gf~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 204 (230)
T 3cc8_A 172 FLK-AGYSISKVDRVYVDH-KMYEPLIEELYGICK 204 (230)
T ss_dssp HHH-TTEEEEEEEEEECCC-GGGHHHHHHHHHHHH
T ss_pred HHH-cCCeEEEEEecccCh-hhccchHHHHHHHHH
Confidence 886 899999999887776 677778777765444
No 105
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.65 E-value=2.1e-15 Score=165.13 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=132.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
..+.+++.++.+++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++++++.+++++++++.+|+.+.+..
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 255 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP- 255 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-
Confidence 3457778888888999999999999999999998 6789999999 999999999999988887899999999887632
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc-cCCCCC----CCHHHHH
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI-FPGGCL----PSLNRIT 770 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i-~p~~~~----~~~~~~~ 770 (864)
.+|+|++..+++|+++++...++++++++|||||++++.+...++..... ...+..... ..++.. .+.+++.
T Consensus 256 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~t~~e~~ 332 (359)
T 1x19_A 256 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN---FDYLSHYILGAGMPFSVLGFKEQARYK 332 (359)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCC---HHHHHHHGGGGGSSCCCCCCCCGGGHH
T ss_pred CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCch---HHHHHHHHHhcCCCCcccCCCCHHHHH
Confidence 34999999999999887799999999999999999999887765431111 111111001 122333 7888998
Q ss_pred HHHhcCCCcEEEEEEecc
Q 002928 771 SAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~ 788 (864)
+.+++ +||+++++..++
T Consensus 333 ~ll~~-aGf~~v~~~~~~ 349 (359)
T 1x19_A 333 EILES-LGYKDVTMVRKY 349 (359)
T ss_dssp HHHHH-HTCEEEEEEEET
T ss_pred HHHHH-CCCceEEEEecC
Confidence 88886 899998887654
No 106
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.65 E-value=1e-15 Score=153.21 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=117.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (864)
.++..+ +++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++++++|+.+++ ++++||
T Consensus 23 ~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD 96 (202)
T 2kw5_A 23 SVANQI--PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWE 96 (202)
T ss_dssp HHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCS
T ss_pred HHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCcc
Confidence 344443 466 9999999999999999987 88999999999999999999988776 7999999999887 668999
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSR 778 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~g 778 (864)
+|++. +.|++.++...+++++.++|||||++++.++......+.... . .......+.+++.+.+. |
T Consensus 97 ~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~l~~~l~---G 162 (202)
T 2kw5_A 97 GIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGG---P------KDLDLLPKLETLQSELP---S 162 (202)
T ss_dssp EEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCC---S------SSGGGCCCHHHHHHHCS---S
T ss_pred EEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCC---C------CcceeecCHHHHHHHhc---C
Confidence 99995 356666788999999999999999999988765443211000 0 01124568888877664 9
Q ss_pred cEEEEEEecc
Q 002928 779 LCVEDLENIG 788 (864)
Q Consensus 779 f~v~~~~~~~ 788 (864)
|+++.++...
T Consensus 163 f~v~~~~~~~ 172 (202)
T 2kw5_A 163 LNWLIANNLE 172 (202)
T ss_dssp SCEEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 9999877654
No 107
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.65 E-value=6e-17 Score=166.45 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=110.4
Q ss_pred hhhhhcCChHHHHhhcCCCCcccc--c-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC
Q 002928 577 ISRHYDLSNELFSLFLDKSMLYSC--A-IFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC 653 (864)
Q Consensus 577 i~~~Yd~~~~~~~~~~~~~~~ys~--~-~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 653 (864)
.+.+|+.++++...|....+.|+. . +.......+.......++.+...+ .+++.+|||||||+|.++..+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~ 84 (236)
T 1zx0_A 6 ATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPID 84 (236)
T ss_dssp --CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEE
T ss_pred CCCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCC
Confidence 455677777777777776666641 1 111111111111123333443333 567889999999999999999876345
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--C-CCCCccEEEE-chhh--hhhChhhHHHHHHHHHhcccc
Q 002928 654 KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL--P-KSNKYDRIIS-CEMI--EAVGHDYMEEFFGCCESLLAE 727 (864)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~-~~~~fD~v~s-~~~~--~~~~~~~~~~~l~~~~~~Lkp 727 (864)
+|+|+|+|++|++.|+++.+..+ .+++++++|+.++ + ++++||+|++ ...+ +.....++..++++++++|||
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp 162 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999887665 4899999999887 5 6689999999 4432 222234567889999999999
Q ss_pred CcEEEEEEec
Q 002928 728 HGLLLLQFIS 737 (864)
Q Consensus 728 gG~l~i~~~~ 737 (864)
||++++.+..
T Consensus 163 gG~l~~~~~~ 172 (236)
T 1zx0_A 163 GGVLTYCNLT 172 (236)
T ss_dssp EEEEEECCHH
T ss_pred CeEEEEEecC
Confidence 9999985543
No 108
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.64 E-value=1.8e-15 Score=151.84 Aligned_cols=130 Identities=23% Similarity=0.268 Sum_probs=109.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
++++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++++..++.+ ++++++|+.+.. +++||+|++..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcH
Confidence 46789999999999999999998745599999999999999999999988864 999999998764 4789999999888
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
+++ ..+++++.++|||||++++.++... +..++.+.+.+ +||+++.+..
T Consensus 136 ~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~~~~~~-~Gf~~~~~~~ 184 (205)
T 3grz_A 136 EIL-----LDLIPQLDSHLNEDGQVIFSGIDYL-------------------------QLPKIEQALAE-NSFQIDLKMR 184 (205)
T ss_dssp HHH-----HHHGGGSGGGEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHH-TTEEEEEEEE
T ss_pred HHH-----HHHHHHHHHhcCCCCEEEEEecCcc-------------------------cHHHHHHHHHH-cCCceEEeec
Confidence 775 7899999999999999999655422 24556666665 8999988776
Q ss_pred ccc
Q 002928 787 IGI 789 (864)
Q Consensus 787 ~~~ 789 (864)
.+.
T Consensus 185 ~~~ 187 (205)
T 3grz_A 185 AGR 187 (205)
T ss_dssp ETT
T ss_pred cCC
Confidence 543
No 109
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.64 E-value=1.3e-15 Score=167.01 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
..+++.++++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+..+ ..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-CCc
Confidence 46677778888999999999999999999998 6789999999 99999999999998888899999999876222 359
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec-CCCcccccccCccchhhh--cccCCCCCCCHHHHHHHHh
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS-VPDQCYDEHRLSPGFIKE--YIFPGGCLPSLNRITSAMT 774 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~--~i~p~~~~~~~~~~~~~l~ 774 (864)
|+|++..+++|+++++...+++++.++|||||++++.+.. .++...... ..+... ...+++...+.+++.+.++
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~~e~~~ll~ 327 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQ---FTELDLRMLVFLGGALRTREKWDGLAA 327 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHH---HHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcch---hhhccHHHhhhcCCcCCCHHHHHHHHH
Confidence 9999999999998777789999999999999999998876 443211111 111111 1234567789999998888
Q ss_pred cCCCcEEEEEEecc
Q 002928 775 SSSRLCVEDLENIG 788 (864)
Q Consensus 775 ~~~gf~v~~~~~~~ 788 (864)
+ +||+++++...+
T Consensus 328 ~-aGf~~~~~~~~~ 340 (360)
T 1tw3_A 328 S-AGLVVEEVRQLP 340 (360)
T ss_dssp H-TTEEEEEEEEEE
T ss_pred H-CCCeEEEEEeCC
Confidence 7 899999887764
No 110
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.1e-15 Score=165.78 Aligned_cols=167 Identities=12% Similarity=0.134 Sum_probs=131.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
....+++.+++++ .+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+ +.++
T Consensus 156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 232 (334)
T 2ip2_A 156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPS 232 (334)
T ss_dssp HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCS
T ss_pred HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCC
Confidence 3456777777777 89999999999999999988 6789999999 99999999998877777799999999877 4336
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhc
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTS 775 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~ 775 (864)
+||+|++..++||++++....++++++++|||||++++.+...++..........++. .....++...+.+++.+.+++
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVH-LFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHH-HHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhH-hHhhCCCcCCCHHHHHHHHHH
Confidence 8999999999999988777899999999999999999998776543211110001111 111234566789999888887
Q ss_pred CCCcEEEEEEecc
Q 002928 776 SSRLCVEDLENIG 788 (864)
Q Consensus 776 ~~gf~v~~~~~~~ 788 (864)
+||+++++...+
T Consensus 312 -aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 -GGFAVERIVDLP 323 (334)
T ss_dssp -TTEEEEEEEEET
T ss_pred -CCCceeEEEECC
Confidence 899998887654
No 111
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.64 E-value=2.6e-15 Score=150.08 Aligned_cols=113 Identities=13% Similarity=0.151 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LPKSN 695 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~~ 695 (864)
....++..+.+.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++++..+++++++++++|+.+ ++...
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3346778888899999999999999999999998 899999999999999999999999987789999999988 44446
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+||+|++...+ +.. +++++.++|||||++++..+.
T Consensus 122 ~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 122 LPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp CCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 89999987643 345 999999999999999996643
No 112
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.64 E-value=7.9e-16 Score=155.82 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=100.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (864)
..+...+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ +++++++|+.+++++++||
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD 116 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTAELFD 116 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCSCCEE
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCCCCcc
Confidence 34444566778899999999999999999997 6799999999999999999876543 8999999999988778999
Q ss_pred EEEEchhhhhhCh-hhHHHHHHHHHhccccCcEEEEEEec
Q 002928 699 RIISCEMIEAVGH-DYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 699 ~v~s~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+|++..+++|+++ +....+++++.++|||||.+++.+..
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999999999974 45578899999999999999997653
No 113
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.64 E-value=2.9e-16 Score=162.08 Aligned_cols=109 Identities=12% Similarity=0.177 Sum_probs=93.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
++.+.+.. ..+.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++ .+|+++++|+++++ ++++
T Consensus 30 ~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~s 99 (257)
T 4hg2_A 30 FRWLGEVA--PARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPAS 99 (257)
T ss_dssp HHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSC
T ss_pred HHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCc
Confidence 34444444 34579999999999999999987 88999999999999988642 38999999999999 7899
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
||+|++..++||+. ++.++++++|+|||||+|++.+...+
T Consensus 100 fD~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 100 VDVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ccEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999998883 57899999999999999999776543
No 114
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.63 E-value=2.2e-15 Score=148.41 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=91.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEc
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISC 703 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~ 703 (864)
.++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++..++ +++++++.|..+++ .+++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4678999999999999999999998 89999999999999999999999888 58999998888754 46789999987
Q ss_pred h-hhhhh------ChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 704 E-MIEAV------GHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 704 ~-~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
. .+.+- ..++...+++++.++|||||++++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3 33320 1245678899999999999999997654
No 115
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.63 E-value=1.3e-16 Score=179.51 Aligned_cols=184 Identities=22% Similarity=0.192 Sum_probs=140.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
..+.+++.+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++..++.++|+++++|+++++.+++
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 3456667777778899999999999999999987556999999999 999999999999998899999999998774478
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC-----Cc-ccccccCccchhhhcccCCCCCCCHHHHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP-----DQ-CYDEHRLSPGFIKEYIFPGGCLPSLNRIT 770 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----~~-~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 770 (864)
||+|+|..+++|+..++....+.++.++|||||++++...... .. .+.......+++.+.+||+..++++.++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~ 304 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAA 304 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHH
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHH
Confidence 9999999999998777778888899999999999986332110 00 00000011234455689999999988764
Q ss_pred HHHhcCCCcEEEEEEeccccHHHHHHHHHHHHH
Q 002928 771 SAMTSSSRLCVEDLENIGIHYYQTLRCWRKNFL 803 (864)
Q Consensus 771 ~~l~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~ 803 (864)
.. +..+..+++.++++.+|.+++..|.+...
T Consensus 305 ~~--~~f~~pvvd~~~~~~~y~~tl~~~~d~~~ 335 (480)
T 3b3j_A 305 VD--EYFRQPVVDTFDIRILMAKSVKYTVNFLE 335 (480)
T ss_dssp HH--HHTTSCEECCCCSTTBCSCCEEEEEETTT
T ss_pred HH--hccCCcEEEEeecccccchhhhhhhhhhc
Confidence 32 11233577788889999888776655443
No 116
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.63 E-value=2.8e-15 Score=154.31 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEE-chhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIIS-CEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s-~~~~ 706 (864)
.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. .+++++++|+.+++.+++||+|+| ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 67889999999999999999998 559999999999999999874 268999999998876678999996 4599
Q ss_pred hhhCh-hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 707 EAVGH-DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 707 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+|++. ++...+++++.++|||||++++.++..+.
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 99854 57889999999999999999997665443
No 117
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.63 E-value=1.5e-15 Score=165.47 Aligned_cols=163 Identities=12% Similarity=0.205 Sum_probs=125.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
...+++.++++++.+|||||||+|.++..++++ ++.+++++|++ .++. +++.+..++.++|+++.+|+.+ +.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-CCC-C
Confidence 457778888888999999999999999999998 67899999994 4444 4444444566789999999962 322 8
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
||+|++..++||+++++...++++++++|||||++++.+...+...........+. ......++...+.+++.+.+++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~-~~~~~~~~~~~t~~e~~~ll~~- 325 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDF-MMLAARTGQERTAAELEPLFTA- 325 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHH-HHHHTTSCCCCBHHHHHHHHHH-
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcCh-hhhhcCCCcCCCHHHHHHHHHH-
Confidence 99999999999998877789999999999999999999877655421111101111 1112356778899999988887
Q ss_pred CCcEEEEEEec
Q 002928 777 SRLCVEDLENI 787 (864)
Q Consensus 777 ~gf~v~~~~~~ 787 (864)
+||+++++...
T Consensus 326 aGf~~~~~~~~ 336 (348)
T 3lst_A 326 AGLRLDRVVGT 336 (348)
T ss_dssp TTEEEEEEEEC
T ss_pred CCCceEEEEEC
Confidence 99999988763
No 118
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.62 E-value=7e-16 Score=163.59 Aligned_cols=154 Identities=18% Similarity=0.312 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC-----------------------------
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGL----------------------------- 677 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l----------------------------- 677 (864)
.++.+|||||||+|.++..+++. ++.+|+|||+|+.+++.|++++...+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 36889999999999999999998 578999999999999999998765442
Q ss_pred ----------------------------CCCeEEEEcccCCCC------CCCCccEEEEchhhhhh----ChhhHHHHHH
Q 002928 678 ----------------------------QDHIRLYLCDYRQLP------KSNKYDRIISCEMIEAV----GHDYMEEFFG 719 (864)
Q Consensus 678 ----------------------------~~~v~~~~~d~~~~~------~~~~fD~v~s~~~~~~~----~~~~~~~~l~ 719 (864)
+++|+++++|+.+.+ .+++||+|+|..+++|+ +++++..+|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 258999999987654 46899999999999888 5568899999
Q ss_pred HHHhccccCcEEEEEEecCCCcccccccCcc-chhhhcccCCCCCCCHHHHHHHHhc-CCCcEEEEEEe
Q 002928 720 CCESLLAEHGLLLLQFISVPDQCYDEHRLSP-GFIKEYIFPGGCLPSLNRITSAMTS-SSRLCVEDLEN 786 (864)
Q Consensus 720 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~i~p~~~~~~~~~~~~~l~~-~~gf~v~~~~~ 786 (864)
+++++|||||+|++...... .+....... .....|- ......+++.+.|.+ ++||..+++..
T Consensus 205 ~~~~~LkpGG~lil~~~~~~--~y~~~~~~~~~~~~~~~---~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWS--SYGKRKTLTETIYKNYY---RIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHH--HHHTTTTSCHHHHHHHH---HCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHHhCCCcEEEEecCCch--hhhhhhcccHHHHhhhh---cEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999999999543211 111111111 1111110 111235677777774 48998765543
No 119
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.62 E-value=1.1e-14 Score=150.16 Aligned_cols=114 Identities=26% Similarity=0.451 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
..+.+.+.+ +++.+|||||||+|.++..+++. .+|+|+|+|+++++.|+++....+ .+++++++|+.+++..++
T Consensus 23 ~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~ 96 (243)
T 3d2l_A 23 WVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEP 96 (243)
T ss_dssp HHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSC
T ss_pred HHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCC
Confidence 334555554 46789999999999999999986 799999999999999999988766 379999999998875589
Q ss_pred ccEEEEch-hhhhh-ChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 697 YDRIISCE-MIEAV-GHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 697 fD~v~s~~-~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
||+|++.. +++|+ ..++...+++++.++|||||++++...
T Consensus 97 fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 97 VDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99999986 99998 446788999999999999999998654
No 120
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.62 E-value=1.1e-15 Score=162.00 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEccc------CCCC---C
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----HIRLYLCDY------RQLP---K 693 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~------~~~~---~ 693 (864)
+++.+|||||||+|..+..+++..+.+|+|+|+|++|++.|+++....+... ++++.+.|+ .+++ +
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3578999999999987766666546799999999999999999987765421 267888887 3221 4
Q ss_pred CCCccEEEEchhhhhh-ChhhHHHHHHHHHhccccCcEEEEEEecCCCccccc-------ccC---ccch----------
Q 002928 694 SNKYDRIISCEMIEAV-GHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE-------HRL---SPGF---------- 752 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~~---~~~~---------- 752 (864)
+++||+|+|..+++|+ ..++...++++++++|||||++++.++......... ... ...|
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 5799999999999875 334678999999999999999999876422110000 000 0000
Q ss_pred hhhcccCCC-------CCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 753 IKEYIFPGG-------CLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 753 ~~~~i~p~~-------~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
+..|. |.+ ++.+..++.+.+++ +||+++....+.
T Consensus 207 ~~~~~-~~~~~~~~~e~~v~~~el~~l~~~-~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 207 IVVYN-PSTMSTPMTEYIIKKNDIVRVFNE-YGFVLVDNVDFA 247 (302)
T ss_dssp EEEBC-TTTBSSCEEEECCCHHHHHHHHHH-TTEEEEEEEEHH
T ss_pred cceee-ccccCCCceeeeeEHHHHHHHHHH-CCCEEEEecChH
Confidence 00121 222 24567788777776 999999987665
No 121
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.62 E-value=7.6e-15 Score=147.07 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
.....++..+.++++.+|||||||+|.++..+++. +.++|+|+|+|+++++.|+++++..++ ++++++++|+.+.. .
T Consensus 27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 105 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD 105 (204)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc
Confidence 34457788889999999999999999999999998 458999999999999999999998888 58999999996654 4
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
.++||+|++...++ ++..+++++.++|||||++++...
T Consensus 106 ~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 106 LPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp SCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 47899999988765 458999999999999999999654
No 122
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.62 E-value=1.8e-15 Score=170.89 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHhhcCceEEeCc---ceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGC---EVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLG 289 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~---~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~ 289 (864)
...+++.|.+.++++|++|++++ +|++|+.++++|. |+|.+|++++||.||+|+.++.. ++++ .. ....+
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~-~l~~--l~---~~~~p 233 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG-QFLD--FK---NQLRP 233 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG-GTSC--CT---TCCEE
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh-hhcC--cc---cceee
Confidence 46899999999999999999999 9999999888987 99999988999999999988743 3333 10 01111
Q ss_pred cCceeeceEEEecCCC-CCCCCcCCc--ccceecc-CCCCc-eEEEEeccccc------------------cC----ccC
Q 002928 290 AFQYVYSDIFLHRDKN-FMPRNPAAW--SAWNFLG-STGGK-VCLTYWLNVVQ------------------NI----EET 342 (864)
Q Consensus 290 ~~~~~~~~~~l~~d~~-~~p~~~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~------------------~l----~~~ 342 (864)
..+...++.+..+.. .++..+... +...|++ .++++ ..+........ .. .+.
T Consensus 234 -~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 312 (438)
T 3dje_A 234 -TAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIPKEAETR 312 (438)
T ss_dssp -EEEEEEEEECCGGGHHHHTTCCEEEETTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCCSSCBHHHHHH
T ss_pred -EEEEEEEEEcChHHhhhhcCCCEEEECCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCcccccCCHHHHHH
Confidence 122222222211100 011111111 1122332 22233 32321000000 00 011
Q ss_pred CCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccc
Q 002928 343 RLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 343 ~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
+.+.+.+++|.+....+...|....|.-. +..+.+...+..+|+|+|.+++|+|+ ..+...|+.+|+.|+|+.
T Consensus 313 l~~~~~~~~P~l~~~~~~~~~~g~~~~t~----D~~piig~~p~~~~l~~a~G~~g~G~-~~ap~~g~~la~~i~g~~ 385 (438)
T 3dje_A 313 VRALLKETMPQLADRPFSFARICWCADTA----NREFLIDRHPQYHSLVLGCGASGRGF-KYLPSIGNLIVDAMEGKV 385 (438)
T ss_dssp HHHHHHHHCGGGTTCCCSEEEEEEEEECT----TSCCEEEECSSCTTEEEEECCTTCCG-GGTTTHHHHHHHHHHTCC
T ss_pred HHHHHHHhCcccccCCcceeeEEEeCcCC----CCCeEEeecCCCCCEEEEECCCCcch-hhhHHHHHHHHHHHhCCC
Confidence 22233456777665555555553222110 11112222334689999999999999 999999999999999875
No 123
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=6.2e-15 Score=146.34 Aligned_cols=135 Identities=20% Similarity=0.265 Sum_probs=112.8
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (864)
.++..+ ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. +++++++|+.+++ ++++||
T Consensus 38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D 109 (195)
T 3cgg_A 38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFD 109 (195)
T ss_dssp HHHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEE
T ss_pred HHHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCcee
Confidence 344444 568899999999999999999997 8899999999999999998752 6899999999887 568999
Q ss_pred EEEEc-hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCC
Q 002928 699 RIISC-EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSS 777 (864)
Q Consensus 699 ~v~s~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~ 777 (864)
+|++. .+++|++.++...+++++.++|||||++++...... ..+..++.+.+.+ +
T Consensus 110 ~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------------~~~~~~~~~~l~~-~ 165 (195)
T 3cgg_A 110 LIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-----------------------GWVFGDFLEVAER-V 165 (195)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-----------------------SCCHHHHHHHHHH-H
T ss_pred EEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------------CcCHHHHHHHHHH-c
Confidence 99998 789999877889999999999999999999653321 1356777777776 8
Q ss_pred CcEEEEEEe
Q 002928 778 RLCVEDLEN 786 (864)
Q Consensus 778 gf~v~~~~~ 786 (864)
||+++....
T Consensus 166 Gf~~~~~~~ 174 (195)
T 3cgg_A 166 GLELENAFE 174 (195)
T ss_dssp TEEEEEEES
T ss_pred CCEEeeeec
Confidence 999987754
No 124
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.61 E-value=1.1e-15 Score=162.47 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=108.4
Q ss_pred HHHHHcC-CCCCCeEEEEcCCchHHHHHH----HHh-cCCEE--EEEeCCHHHHHHHHHHHHHc-CCCCCeEE--EEccc
Q 002928 620 LLIQKAR-VSKGHEVLEIGCGWGTLAIEI----VKQ-TGCKY--TGITLSEEQLKYAEMKVKEA-GLQDHIRL--YLCDY 688 (864)
Q Consensus 620 ~~~~~l~-~~~~~~vLDiGcG~G~~~~~l----a~~-~~~~v--~gid~s~~~~~~a~~~~~~~-~l~~~v~~--~~~d~ 688 (864)
.++..+. ..++.+|||||||+|.++..+ +.+ ++++| +|+|+|++|++.|++++... ++ .++++ ..+|+
T Consensus 42 ~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~ 120 (292)
T 2aot_A 42 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETS 120 (292)
T ss_dssp HHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCH
T ss_pred hHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecch
Confidence 3333333 357789999999999876543 333 45654 99999999999999998754 33 35554 45555
Q ss_pred CCCC-------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcc--cC
Q 002928 689 RQLP-------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYI--FP 759 (864)
Q Consensus 689 ~~~~-------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i--~p 759 (864)
.+++ ++++||+|++..+++|+ +++..++++++++|||||++++......... ..+...+. ++
T Consensus 121 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------~~~~~~~~~~~~ 191 (292)
T 2aot_A 121 SEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-------DKLWKKYGSRFP 191 (292)
T ss_dssp HHHHHHHHTTTCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHH-------HHHHHHHGGGSC
T ss_pred hhhhhhhccccCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecCCccH-------HHHHHHHHHhcc
Confidence 5432 35789999999999999 6789999999999999999999865432110 11111111 11
Q ss_pred ---CCCCCCHHHHHHHHhcCCCcEEEEE
Q 002928 760 ---GGCLPSLNRITSAMTSSSRLCVEDL 784 (864)
Q Consensus 760 ---~~~~~~~~~~~~~l~~~~gf~v~~~ 784 (864)
....++..++.+.+.+ +||+++..
T Consensus 192 ~~~~~~~~~~~~~~~~l~~-aGf~~~~~ 218 (292)
T 2aot_A 192 QDDLCQYITSDDLTQMLDN-LGLKYECY 218 (292)
T ss_dssp CCTTCCCCCHHHHHHHHHH-HTCCEEEE
T ss_pred CCCcccCCCHHHHHHHHHH-CCCceEEE
Confidence 2345788899888886 89988764
No 125
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.61 E-value=2.8e-15 Score=156.90 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=115.3
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGL--------------------------- 677 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l--------------------------- 677 (864)
...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4567889999999999999999886 55 999999999999999998764321
Q ss_pred -CCCe-EEEEcccCCCC--CC---CCccEEEEchhhhhhCh--hhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC
Q 002928 678 -QDHI-RLYLCDYRQLP--KS---NKYDRIISCEMIEAVGH--DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL 748 (864)
Q Consensus 678 -~~~v-~~~~~d~~~~~--~~---~~fD~v~s~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 748 (864)
..++ +++++|+.+.+ ++ ++||+|++..+++|++. +++..+++++.++|||||++++.+..... .+. .
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~---~ 207 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YYM---I 207 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEE---E
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eEE---c
Confidence 0128 99999998864 34 78999999999995543 47899999999999999999998754322 110 0
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEecccc
Q 002928 749 SPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENIGIH 790 (864)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~~~~ 790 (864)
....++ ....+.+++.+.+.+ +||+++.++....+
T Consensus 208 -----~~~~~~-~~~~~~~~~~~~l~~-aGf~~~~~~~~~~~ 242 (265)
T 2i62_A 208 -----GEQKFS-SLPLGWETVRDAVEE-AGYTIEQFEVISQN 242 (265)
T ss_dssp -----TTEEEE-CCCCCHHHHHHHHHH-TTCEEEEEEEECCC
T ss_pred -----CCcccc-ccccCHHHHHHHHHH-CCCEEEEEEEeccc
Confidence 000001 123467788888886 89999998876533
No 126
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.60 E-value=2e-15 Score=153.16 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=108.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhh
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEA 708 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~ 708 (864)
+.+|||||||+|.++..+++. +|+|+|+++++.++++ +++++++|+.+++ ++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999988764 9999999999999876 5899999999888 6679999999999999
Q ss_pred hChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 709 VGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 709 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
+ .++..+++++.++|||||.+++.++.........+... ......+......+..++.+.+++ +||+++.+...
T Consensus 115 ~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~-~Gf~~~~~~~~ 188 (219)
T 1vlm_A 115 V--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKSVFYKNARFFSTEELMDLMRK-AGFEEFKVVQT 188 (219)
T ss_dssp S--SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC-CCSTTCCCCCHHHHHHHHHH-TTCEEEEEEEE
T ss_pred c--cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCcchhcccccCCHHHHHHHHHH-CCCeEEEEecc
Confidence 9 56799999999999999999998765432110000000 000111123456789999888886 89999887764
No 127
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.60 E-value=1e-14 Score=151.42 Aligned_cols=120 Identities=23% Similarity=0.397 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...+..++..+..+++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++....++ +++++++|+.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC
Confidence 345667777777778899999999999999999997 88999999999999999999988775 799999999998755
Q ss_pred CCccEEEEc-hhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 695 NKYDRIISC-EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 695 ~~fD~v~s~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++||+|++. ..++|++.++...+++++.++|||||.+++....
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 789999987 4566776678899999999999999999986543
No 128
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.60 E-value=1.8e-15 Score=152.60 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CCCCccEEEEc
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---KSNKYDRIISC 703 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~~fD~v~s~ 703 (864)
++.+|||||||+|.++..+|+. ++.+|+|||+|+++++.|++++...++. +++++++|+.++ + ++++||.|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5789999999999999999988 6789999999999999999999998886 799999998874 2 56899999998
Q ss_pred hhhhhhChhhH------HHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAVGHDYM------EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 735 (864)
....+...... ..+++++.++|||||++++.+
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 54332211111 369999999999999999965
No 129
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.59 E-value=1e-14 Score=158.67 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=131.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
...+++.+++.+..+|||||||+|.++..++++ |+.+++..|+ +++++.|++++...+ .++|+++.+|+.+.+. ..
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~ 244 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PE 244 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CC
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-CC
Confidence 356777777888889999999999999999999 8889999997 889999998876544 5799999999876553 35
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
+|+|++..++|++++++...+|+++++.|+|||+++|.+...++...........-+.-....++...+.+++.+.+++
T Consensus 245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~- 323 (353)
T 4a6d_A 245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS- 323 (353)
T ss_dssp CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH-
T ss_pred ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH-
Confidence 8999999999999998889999999999999999999988766543221110000111223456777899999888886
Q ss_pred CCcEEEEEEecc
Q 002928 777 SRLCVEDLENIG 788 (864)
Q Consensus 777 ~gf~v~~~~~~~ 788 (864)
+||+.+++...+
T Consensus 324 AGf~~v~v~~~~ 335 (353)
T 4a6d_A 324 AGFRDFQFKKTG 335 (353)
T ss_dssp HTCEEEEEECCS
T ss_pred CCCceEEEEEcC
Confidence 999999887655
No 130
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.59 E-value=3.5e-14 Score=157.06 Aligned_cols=194 Identities=11% Similarity=0.058 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHH--HHhhcCCCChHHHHhhccCc
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDA--LRMLGNQATFEEKRVLGAFQ 292 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~--~~ll~~~~~~~~~~~l~~~~ 292 (864)
..+++.|++.++++|++|+++++|++|+.++++|.|+|.+| +++||+||+|++.+.. ...++.. .++..+
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~-------~~~~~p 225 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR-------PLGLQP 225 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC-------CCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC-------CCceee
Confidence 68999999999999999999999999999999999999888 8999999999987642 2222210 001111
Q ss_pred eeeceEEEecCCCCCCCC-cCCc--ccceeccCCCCceEEEEeccc---cccCcc------CCCCeEEEcCCCCCCccee
Q 002928 293 YVYSDIFLHRDKNFMPRN-PAAW--SAWNFLGSTGGKVCLTYWLNV---VQNIEE------TRLPFLVTLNPDHTPEHTL 360 (864)
Q Consensus 293 ~~~~~~~l~~d~~~~p~~-~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~l~~------~~~~~~~~l~p~~~~~~~~ 360 (864)
.....+.+.......+.. +... +...|.+...++.++...... ..+... .+.+.+.. .|......+.
T Consensus 226 ~rg~~~~~~~~~~~~~~~~p~~~~~~~~~y~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 304 (381)
T 3nyc_A 226 KRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE-ATTLTIRRPE 304 (381)
T ss_dssp EEEEEEEECCCTTCCCTTCCEEEETTSSCEEEEETTEEEEECCCCEECCSSCCCCCHHHHHHHHHHHHH-HBSCCCCCCS
T ss_pred eEEEEEEECCCcCCCcCccceEEeCCCCEEEEeCCCcEEEeCCcCCCCCcccCCCChHHHHHHHHHHHh-cCCCccccee
Confidence 111111221111111111 1111 111233211144443211110 000000 00000111 2333333455
Q ss_pred eeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 361 FKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 361 ~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
..|....|... +..+.+......+|+|++.+++|+|+ ..|...|+.+|+.|+|+..+
T Consensus 305 ~~w~G~r~~t~----D~~p~ig~~~~~~~l~~a~G~~g~G~-~~ap~~g~~la~~i~g~~~~ 361 (381)
T 3nyc_A 305 HTWAGLRSFVA----DGDLVAGYAANAEGFFWVAAQGGYGI-QTSAAMGEASAALIRHQPLP 361 (381)
T ss_dssp EEEEEEEEECT----TSCCEEEECTTSTTEEEEECCTTCTT-TTHHHHHHHHHHHHTTCCCC
T ss_pred eeeEEccccCC----CCCceecCCCCCCCeEEEEcCCChhH-hhCHHHHHHHHHHHhCCCCC
Confidence 66764333211 11122222334689999999999999 99999999999999987754
No 131
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.59 E-value=8.7e-15 Score=139.04 Aligned_cols=110 Identities=11% Similarity=0.183 Sum_probs=93.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (864)
.+...+ .+.++|||||||+|.++..++.. ++++|+++|+|+.|++.+++++...|+..++++ +|....++.++||
T Consensus 42 ~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~D 117 (200)
T 3fzg_A 42 YVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYD 117 (200)
T ss_dssp HHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEE
T ss_pred HHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcC
Confidence 444444 45789999999999999999887 788999999999999999999999998766666 6665444668899
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+|++..++||+ ++.+..+.++.+.|||||.++-..
T Consensus 118 vVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 118 VVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999 566777779999999999988654
No 132
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.59 E-value=1.2e-14 Score=151.95 Aligned_cols=164 Identities=10% Similarity=0.127 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCeEEEEcCCc---hHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 002928 611 EVAQMRKVSLLIQKAR-VSKGHEVLEIGCGW---GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685 (864)
Q Consensus 611 ~~aq~~~~~~~~~~l~-~~~~~~vLDiGcG~---G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~ 685 (864)
...++..++.+++.+. .....+|||||||+ |.++..+++. ++++|+++|+|+.|++.|++++.. .+++++++
T Consensus 58 a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~ 134 (274)
T 2qe6_A 58 AIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFT 134 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEE
T ss_pred HHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEE
Confidence 3455666677777765 34457999999999 9888777665 689999999999999999998843 24899999
Q ss_pred cccCCCC------------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchh
Q 002928 686 CDYRQLP------------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFI 753 (864)
Q Consensus 686 ~d~~~~~------------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 753 (864)
+|+.+.+ +.++||+|++..++||++++++..++++++++|||||+|++.+..... ..........+
T Consensus 135 ~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~~~~~~~~~~~ 212 (274)
T 2qe6_A 135 ADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--LPAQQKLARIT 212 (274)
T ss_dssp CCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--CHHHHHHHHHH
T ss_pred eeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--hHHHHHHHHHH
Confidence 9997631 124899999999999998777899999999999999999998876532 11111111111
Q ss_pred hhcccCCCCCCCHHHHHHHHhcCCCcEEEE
Q 002928 754 KEYIFPGGCLPSLNRITSAMTSSSRLCVED 783 (864)
Q Consensus 754 ~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~ 783 (864)
.....| ....+.+++.+.+ .||++++
T Consensus 213 ~~~~~~-~~~~s~~ei~~~l---~G~~l~~ 238 (274)
T 2qe6_A 213 RENLGE-GWARTPEEIERQF---GDFELVE 238 (274)
T ss_dssp HHHHSC-CCCBCHHHHHHTT---TTCEECT
T ss_pred HhcCCC-CccCCHHHHHHHh---CCCeEcc
Confidence 111112 4557888887665 4888764
No 133
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.59 E-value=1.7e-14 Score=147.53 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=106.1
Q ss_pred HcCCCCCCeEEEEcCC-chHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEE
Q 002928 624 KARVSKGHEVLEIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRI 700 (864)
Q Consensus 624 ~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v 700 (864)
...++++.+|||+||| +|.++..+++..+.+|+|+|+|+++++.|+++++..++ +++++++|+..+. ++++||+|
T Consensus 50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEE
T ss_pred HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEE
Confidence 3346789999999999 99999999987678999999999999999999999887 8999999976543 45899999
Q ss_pred EEchhhhhhCh-----------------hhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCC
Q 002928 701 ISCEMIEAVGH-----------------DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCL 763 (864)
Q Consensus 701 ~s~~~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~ 763 (864)
+++..+.+.+. +....+++++.++|||||++++......
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------ 183 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------ 183 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------------
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------------
Confidence 99877655432 2247899999999999999998533211
Q ss_pred CCHHHHHHHHhcCCCcEEEEEEe
Q 002928 764 PSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 764 ~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
....++.+.+.+ .||.+..++.
T Consensus 184 ~~~~~~~~~l~~-~g~~~~~~~~ 205 (230)
T 3evz_A 184 KLLNVIKERGIK-LGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEEE
T ss_pred hHHHHHHHHHHH-cCCceEEEEe
Confidence 013455666665 7998776643
No 134
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.59 E-value=5.2e-15 Score=147.39 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=97.7
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCC
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNK 696 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (864)
.+....++++.+|||+|||+|.++..+++. +.++|+|+|+|+++++.|+++++..++.++++++++|+.+++ .+++
T Consensus 14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSC
T ss_pred HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCC
Confidence 334445788999999999999999999998 457999999999999999999999888679999999998875 4578
Q ss_pred ccEEEEchhhhh-------hChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 697 YDRIISCEMIEA-------VGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 697 fD~v~s~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
||+|++...+.. ...++...+++++.++|||||++++..+.
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 999999875511 11235678999999999999999997654
No 135
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.59 E-value=1.6e-14 Score=171.65 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+++.|.+.+++.|++|+++++|++|+.++++|.|++.+|+++.||.||+|+....
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence 689999999999999999999999999999999999998887899999999998763
No 136
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.59 E-value=6.5e-15 Score=144.03 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=99.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~ 692 (864)
......+++.+.++++.+|||+|||+|.++..+++. ++++|+|+|+|+++++.|+++++..++++++ ++++|..+ ++
T Consensus 11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~ 89 (178)
T 3hm2_A 11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD 89 (178)
T ss_dssp HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG
T ss_pred HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh
Confidence 344567788888899999999999999999999998 5789999999999999999999998887789 88898754 33
Q ss_pred -CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 693 -KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.+++||+|++..+++| ..+++++.++|||||++++.++.
T Consensus 90 ~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp GCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred ccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 2378999999998877 57899999999999999997653
No 137
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.58 E-value=9.6e-15 Score=144.35 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~ 704 (864)
.++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++++..++ ++++++++|+.+++ ++++||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988887456899999999999999999999888 58999999998764 368999999998
Q ss_pred hhhhhChhhHHHHHHHHHh--ccccCcEEEEEEecC
Q 002928 705 MIEAVGHDYMEEFFGCCES--LLAEHGLLLLQFISV 738 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~~ 738 (864)
.+++. .++...+++++.+ +|||||+++++....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87764 2568899999999 999999999977653
No 138
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.58 E-value=4.2e-15 Score=149.06 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=106.5
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNK 696 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (864)
+.+.++||++|||+|||+|.++.++|+. +..+|+|+|+|++|++.+++++++.+ ++..+.+|..+.. ..++
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGGGTTTCCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccccccccce
Confidence 4567899999999999999999999998 56899999999999999998876543 8999999987643 4578
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
+|+|++.. .|. ++...+++++++.|||||++++..-........ . |. ....+..+.|.+
T Consensus 148 vDvVf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~---p----------~~---~~~~~ev~~L~~- 206 (233)
T 4df3_A 148 VDGLYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT---E----------PS---EVYKREIKTLMD- 206 (233)
T ss_dssp EEEEEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT---C----------CC---HHHHHHHHHHHH-
T ss_pred EEEEEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC---C----------hH---HHHHHHHHHHHH-
Confidence 99998753 333 457889999999999999999864321111000 0 00 012334456665
Q ss_pred CCcEEEEEEeccc
Q 002928 777 SRLCVEDLENIGI 789 (864)
Q Consensus 777 ~gf~v~~~~~~~~ 789 (864)
+||++.+..++.+
T Consensus 207 ~GF~l~e~i~L~p 219 (233)
T 4df3_A 207 GGLEIKDVVHLDP 219 (233)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCCEEEEEEccCC
Confidence 8999988877644
No 139
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.57 E-value=1.6e-14 Score=150.64 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=111.1
Q ss_pred ccccCchHHHHHhhhhhhcCChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHH
Q 002928 564 ISRKNTLTQARRNISRHYDLSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTL 643 (864)
Q Consensus 564 ~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~ 643 (864)
....+++....+.++..||...+... + ....+.+..++..+- +++.+|||||||+|.+
T Consensus 11 ~~~~~~~~~~~~~~a~~Yd~~~~~~~--------------------~-~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~ 68 (260)
T 2avn_A 11 HHMKLRSWEFYDRIARAYDSMYETPK--------------------W-KLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKW 68 (260)
T ss_dssp -CEECCHHHHHHHHHHHHGGGGCSHH--------------------H-HHHHHHHHHHHHHHC-CSCCEEEEETCTTCHH
T ss_pred hhhhhhhcchhhHHHHHHHHhccccc--------------------h-hHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHH
Confidence 34457788889999999985431100 0 112233344444432 2788999999999999
Q ss_pred HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHH
Q 002928 644 AIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCE 722 (864)
Q Consensus 644 ~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~ 722 (864)
+..+++. +.+|+|+|+|+++++.|+++.. .+ ++++|+.+++ ++++||+|++..+++|+.. ++..+++++.
T Consensus 69 ~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~-~~~~~l~~~~ 139 (260)
T 2avn_A 69 SLFLQER-GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALGDVLSYVE-NKDKAFSEIR 139 (260)
T ss_dssp HHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECSSHHHHCS-CHHHHHHHHH
T ss_pred HHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcchhhhccc-cHHHHHHHHH
Confidence 9999997 8899999999999999998743 12 8899999988 6789999999998888753 4899999999
Q ss_pred hccccCcEEEEEEecC
Q 002928 723 SLLAEHGLLLLQFISV 738 (864)
Q Consensus 723 ~~LkpgG~l~i~~~~~ 738 (864)
++|||||++++..++.
T Consensus 140 ~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 140 RVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHEEEEEEEEEEEEBH
T ss_pred HHcCCCeEEEEEeCCh
Confidence 9999999999987653
No 140
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.57 E-value=1.7e-15 Score=155.21 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEE-
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIIS- 702 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s- 702 (864)
..+|.+|||||||+|..+.++++..+.+|+|||+|+++++.|+++....+. +++++.+|+.++. ++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 468899999999999999999987557999999999999999999887664 7899999987653 5688999974
Q ss_pred ----chhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 703 ----CEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 703 ----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
...++|+ .++..++++++|+|||||+|++.
T Consensus 136 ~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhh--cchhhhhhhhhheeCCCCEEEEE
Confidence 4566777 67899999999999999999874
No 141
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.57 E-value=1.7e-14 Score=171.62 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc-EEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF-QRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~-~~~ad~VV~A~~~~ 270 (864)
..+++.|.+.+++.|++|+++++|++|+.++++|.|.+.+|+ +++||.||+|++..
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 689999999999999999999999999999889999998887 79999999999877
No 142
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.57 E-value=1.5e-14 Score=158.39 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=124.5
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 617 KVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 617 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
....+++.+. +.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|+++ ++|+++.+|+.+ + +
T Consensus 190 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p 260 (368)
T 3reo_A 190 TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVP 260 (368)
T ss_dssp HHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred HHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCC
Confidence 3456677666 777899999999999999999998 7889999999 8888877642 489999999876 4 4
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccccc----CccchhhhcccCCCCCCCHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHR----LSPGFIKEYIFPGGCLPSLNRI 769 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----~~~~~~~~~i~p~~~~~~~~~~ 769 (864)
. . |+|++..++||+++++...++++++++|||||++++.++..++....... ...++......+++...+.+++
T Consensus 261 ~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~ 338 (368)
T 3reo_A 261 K-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338 (368)
T ss_dssp C-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH
T ss_pred C-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH
Confidence 3 3 99999999999998888899999999999999999999876654321100 0011111112356778899999
Q ss_pred HHHHhcCCCcEEEEEEecc
Q 002928 770 TSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.+++ +||+++++....
T Consensus 339 ~~ll~~-AGF~~v~~~~~~ 356 (368)
T 3reo_A 339 QALAMA-SGFRGFKVASCA 356 (368)
T ss_dssp HHHHHH-TTCCEEEEEEEE
T ss_pred HHHHHH-CCCeeeEEEEeC
Confidence 888886 999998887653
No 143
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.57 E-value=7.5e-15 Score=147.95 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=107.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSN 695 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (864)
...++..+.. ++.+|||||||+|.++..+ +. +|+|+|+|+++++.++++. .+++++++|+.+++ +++
T Consensus 26 ~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~ 94 (211)
T 2gs9_A 26 EERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGE 94 (211)
T ss_dssp HHHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSS
T ss_pred HHHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCC
Confidence 3345555443 7889999999999999887 56 9999999999999999875 37899999999988 678
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMT 774 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~ 774 (864)
+||+|++..+++|+ +++..+++++.++|||||++++.++.........+.. ........+....+.+.+++.+.+.
T Consensus 95 ~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 95 SFDVVLLFTTLEFV--EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRR-LGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp CEEEEEEESCTTTC--SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHH-HHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred cEEEEEEcChhhhc--CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHH-HhhccCccccccccCCHHHHHHHhc
Confidence 99999999999999 4689999999999999999999877543321000000 0000001112345678999987765
No 144
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.57 E-value=6.7e-15 Score=156.56 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=99.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcccCCCC---
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ---DHIRLYLCDYRQLP--- 692 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~---~~v~~~~~d~~~~~--- 692 (864)
+.+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+.+++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 45555556667889999999999999999998 889999999999999999887543321 36889999988865
Q ss_pred -CCCCccEEEEc-hhhhhhCh-----hhHHHHHHHHHhccccCcEEEEEEec
Q 002928 693 -KSNKYDRIISC-EMIEAVGH-----DYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 693 -~~~~fD~v~s~-~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++++||+|++. .+++|+++ +++..+++++.++|||||++++....
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 56899999999 89999966 55899999999999999999997653
No 145
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.57 E-value=8.5e-15 Score=147.45 Aligned_cols=113 Identities=19% Similarity=0.130 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
......+++.+.++++.+|||||||+|.++..+++. +.+|+++|+|+++++.|+++++..+++ +++++++|+.+.. .
T Consensus 63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc
Confidence 345567888888999999999999999999999998 899999999999999999999998886 8999999998866 5
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+++||+|++..+++|+++ ++.++|||||++++....
T Consensus 141 ~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 679999999999999964 589999999999996654
No 146
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.57 E-value=3.5e-14 Score=162.18 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCCCeEEEEcc
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEA------GLQDHIRLYLCD 687 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~------~l~~~v~~~~~d 687 (864)
..++.+++.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|++++... ++. +++++++|
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESC
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECc
Confidence 445566676666688999999999999999999973 279999999999999999977643 443 89999999
Q ss_pred cCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 688 YRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 688 ~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+.+++ .+++||+|++..+++|+++.....+++++.++|||| .+++.++.
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99998 668999999999999998776778999999999999 77776654
No 147
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.57 E-value=2.6e-14 Score=141.72 Aligned_cols=118 Identities=23% Similarity=0.432 Sum_probs=103.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQD-HIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~~~~~ 696 (864)
.+.+++.+..+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++++ +++++++|+.+...+++
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 457778888889999999999999999999998 8999999999999999999999888763 49999999987555678
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
||+|++..+++|. .++...+++++.++|||||.+++.+..
T Consensus 120 ~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 9999999888762 357889999999999999999997754
No 148
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.56 E-value=6e-15 Score=152.45 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=113.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C-----CCCccEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K-----SNKYDRI 700 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~-----~~~fD~v 700 (864)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.+++ . ..+||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence 578899999999999999999997 5699999999999999998862 238999999998865 1 1359999
Q ss_pred EEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCccccc-----ccCccc----hhhhcccCCCCCCCHHHHHH
Q 002928 701 ISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE-----HRLSPG----FIKEYIFPGGCLPSLNRITS 771 (864)
Q Consensus 701 ~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~----~~~~~i~p~~~~~~~~~~~~ 771 (864)
++..+++|++.++...+++++.++|||||++++.++..+...+.. ...... .+..-..|+ ..+.+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 206 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPG--IFTAEDIEL 206 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCC--CCCHHHHHH
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCC--ccCHHHHHH
Confidence 999999999877899999999999999999999887654321100 000000 111111121 246778777
Q ss_pred HHhcCCCcEEEEEEec
Q 002928 772 AMTSSSRLCVEDLENI 787 (864)
Q Consensus 772 ~l~~~~gf~v~~~~~~ 787 (864)
.+ +||+++.....
T Consensus 207 ~~---aGf~~~~~~~~ 219 (245)
T 3ggd_A 207 YF---PDFEILSQGEG 219 (245)
T ss_dssp HC---TTEEEEEEECC
T ss_pred Hh---CCCEEEecccc
Confidence 65 69999886654
No 149
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.56 E-value=2e-14 Score=157.06 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=125.8
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 617 KVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 617 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
....+++.+. +.+..+|||||||+|.++..++++ ++.+++++|+ +++++.|++. ++|+++.+|+.+ + +
T Consensus 188 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p 258 (364)
T 3p9c_A 188 ITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVP 258 (364)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCC
Confidence 4456777776 778899999999999999999998 7889999999 8888877642 489999999887 5 4
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC----ccchhhhcccCCCCCCCHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL----SPGFIKEYIFPGGCLPSLNRI 769 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~~~~i~p~~~~~~~~~~ 769 (864)
. . |+|++..++|++++++...++++++++|||||++++.++..++........ ..++......+++...+.+++
T Consensus 259 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 336 (364)
T 3p9c_A 259 S-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF 336 (364)
T ss_dssp C-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH
T ss_pred C-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH
Confidence 3 3 999999999999988889999999999999999999998766543211100 011111112367788899999
Q ss_pred HHHHhcCCCcEEEEEEecc
Q 002928 770 TSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.+++ +||+++++....
T Consensus 337 ~~ll~~-AGF~~v~~~~~~ 354 (364)
T 3p9c_A 337 QALARG-AGFTGVKSTYIY 354 (364)
T ss_dssp HHHHHH-TTCCEEEEEEEE
T ss_pred HHHHHH-CCCceEEEEEcC
Confidence 888886 999999887654
No 150
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.56 E-value=9.9e-15 Score=155.76 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHH-------HHcCC-CCCeEEEE
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKV-------KEAGL-QDHIRLYL 685 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~-------~~~~l-~~~v~~~~ 685 (864)
...+..+++.+.++++++|||||||+|.+++.+|...++ +|+|||+|+.+++.|++++ +..|+ .++|+|++
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 566788999999999999999999999999999987566 5999999999999998754 34565 36899999
Q ss_pred cccCCCC-CC--CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcc
Q 002928 686 CDYRQLP-KS--NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQC 742 (864)
Q Consensus 686 ~d~~~~~-~~--~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 742 (864)
+|+.+++ .+ ..||+|+++..+. . .+....|+++.++|||||++++.+...+...
T Consensus 239 GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 239 GDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp CCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred CcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 9999887 22 4799999987653 3 5678889999999999999999876665543
No 151
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.55 E-value=2e-14 Score=147.94 Aligned_cols=131 Identities=14% Similarity=0.195 Sum_probs=104.7
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C---CCCccEE
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K---SNKYDRI 700 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~---~~~fD~v 700 (864)
.++++.+|||||||+|.++..++.. ++.+|+|+|+|+++++.|+++++..+++ +++++++|+.+++ . +++||+|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEE
Confidence 3457889999999999999999975 6789999999999999999999998886 6999999998876 2 5789999
Q ss_pred EEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcE
Q 002928 701 ISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 701 ~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~ 780 (864)
++..+ .++..+++++.++|||||++++..-... . ....++.+.+.+ .||.
T Consensus 146 ~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~--------------~---------~~~~~~~~~l~~-~g~~ 195 (240)
T 1xdz_A 146 TARAV------ARLSVLSELCLPLVKKNGLFVALKAASA--------------E---------EELNAGKKAITT-LGGE 195 (240)
T ss_dssp EEECC------SCHHHHHHHHGGGEEEEEEEEEEECC-C--------------H---------HHHHHHHHHHHH-TTEE
T ss_pred EEecc------CCHHHHHHHHHHhcCCCCEEEEEeCCCc--------------h---------HHHHHHHHHHHH-cCCe
Confidence 99762 4578999999999999999988421100 0 013445566665 8999
Q ss_pred EEEEEec
Q 002928 781 VEDLENI 787 (864)
Q Consensus 781 v~~~~~~ 787 (864)
+..+..+
T Consensus 196 ~~~~~~~ 202 (240)
T 1xdz_A 196 LENIHSF 202 (240)
T ss_dssp EEEEEEE
T ss_pred EeEEEEE
Confidence 8877654
No 152
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.55 E-value=2e-14 Score=148.85 Aligned_cols=128 Identities=23% Similarity=0.241 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. +++.++|+.+..++++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcH
Confidence 568899999999999999999987 679999999999999999999988874 89999998763234689999998766
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEe
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~ 786 (864)
+++ ..+++++.++|||||++++..+... ...++.+.+.+ +||++..+..
T Consensus 195 ~~~-----~~~l~~~~~~LkpgG~lils~~~~~-------------------------~~~~v~~~l~~-~Gf~~~~~~~ 243 (254)
T 2nxc_A 195 ELH-----AALAPRYREALVPGGRALLTGILKD-------------------------RAPLVREAMAG-AGFRPLEEAA 243 (254)
T ss_dssp HHH-----HHHHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHH-----HHHHHHHHHHcCCCCEEEEEeeccC-------------------------CHHHHHHHHHH-CCCEEEEEec
Confidence 554 7899999999999999999765321 24566677776 8999988776
Q ss_pred cc
Q 002928 787 IG 788 (864)
Q Consensus 787 ~~ 788 (864)
.+
T Consensus 244 ~~ 245 (254)
T 2nxc_A 244 EG 245 (254)
T ss_dssp ET
T ss_pred cC
Confidence 54
No 153
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.53 E-value=2.1e-14 Score=140.27 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=98.4
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P- 692 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 692 (864)
...+.+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++++..++.++++++++|+.+. +
T Consensus 17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177)
T ss_dssp -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence 34456666665 67889999999999999999998844699999999999999999999888877899999998773 3
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHH--hccccCcEEEEEEecC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCE--SLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 738 (864)
.+++||+|++...++. ......++.+. ++|||||.+++.....
T Consensus 97 ~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 97 LTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp BCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 4467999999877643 24567777776 9999999999977554
No 154
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.53 E-value=3.1e-14 Score=156.51 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=122.4
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 617 KVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 617 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
....+++.+. ++++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +.+
T Consensus 196 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~ 266 (372)
T 1fp1_D 196 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVP 266 (372)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCC
Confidence 3466777775 678899999999999999999998 6789999999 9999887642 379999999977 522
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccC-ccchhhh--cccCCCCCCCHHHHHH
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRL-SPGFIKE--YIFPGGCLPSLNRITS 771 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~--~i~p~~~~~~~~~~~~ 771 (864)
. ||+|++..++||++++....++++++++|||||++++.++..+......... ...+... ...+++...+.+++.+
T Consensus 267 ~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 345 (372)
T 1fp1_D 267 Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK 345 (372)
T ss_dssp C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHH
Confidence 3 9999999999999876667999999999999999999987765543111000 0011111 1134566778999988
Q ss_pred HHhcCCCcEEEEEEec
Q 002928 772 AMTSSSRLCVEDLENI 787 (864)
Q Consensus 772 ~l~~~~gf~v~~~~~~ 787 (864)
.+++ +||+++++...
T Consensus 346 ll~~-aGf~~~~~~~~ 360 (372)
T 1fp1_D 346 LSKL-SGFSKFQVACR 360 (372)
T ss_dssp HHHH-TTCSEEEEEEE
T ss_pred HHHH-CCCceEEEEEc
Confidence 8886 89999887663
No 155
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.53 E-value=4.6e-14 Score=139.61 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LPKS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 694 (864)
.....+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++...++.+++++.++|+.+ ++..
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHh-cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 34456777788889999999999999999999997 589999999999999999999988886799999999876 3332
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++||+|++..+++++ ..+++++.++|+|||.+++...
T Consensus 99 ~~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 99 PDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence 589999999877654 7899999999999999999654
No 156
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.52 E-value=7.7e-14 Score=145.23 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=96.1
Q ss_pred HHHHHcCCC-CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC
Q 002928 620 LLIQKARVS-KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSN 695 (864)
Q Consensus 620 ~~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~ 695 (864)
.+...+.++ ++.+|||+|||+|.++..++++...+|+|+|+++.+++.|++++...++.++++++++|+.+++ +++
T Consensus 39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~ 118 (259)
T 3lpm_A 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE 118 (259)
T ss_dssp HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence 344455677 8999999999999999999998445999999999999999999999999889999999998876 368
Q ss_pred CccEEEEchhhhhh------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 696 KYDRIISCEMIEAV------------------GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 696 ~fD~v~s~~~~~~~------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+||+|+++..+.+. ...++..+++++.++|||||++++.
T Consensus 119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 99999997554332 1134678999999999999999983
No 157
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.52 E-value=4e-14 Score=143.05 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccC
Q 002928 613 AQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYR 689 (864)
Q Consensus 613 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~ 689 (864)
.+.+.+..++...+.+++.+|||||||+|..+..+++. ++++|+++|+|+++++.|+++++..++. ++|+++++|+.
T Consensus 40 ~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~ 119 (221)
T 3dr5_A 40 MTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence 34556667777666666779999999999999999996 3789999999999999999999999997 79999999987
Q ss_pred CCC---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 690 QLP---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 690 ~~~---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+.. .+++||+|++.... .+...+++++.++|||||.+++.++.
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHHhcCCCcCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 653 25899999987543 34678999999999999999996544
No 158
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.51 E-value=2.4e-14 Score=145.27 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CC-----CC
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-KS-----NK 696 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~-----~~ 696 (864)
...++.+|||||||+|..+..+++. ++++|+++|+|+++++.|+++++..++.++|+++++|+.+. + .. ++
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 3456789999999999999999986 47899999999999999999999999987899999998553 3 12 68
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
||+|++....++. .....+++.+ ++|||||++++.++..
T Consensus 135 fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 135 LDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp CSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred eEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9999999877777 4456778888 9999999999966553
No 159
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.51 E-value=3.3e-14 Score=145.30 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=95.7
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CCC
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK---SNK 696 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~---~~~ 696 (864)
+...+...++.+|||||||+|..+..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+..+ +++
T Consensus 63 l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (232)
T 3ntv_A 63 IKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKV 142 (232)
T ss_dssp HHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSC
T ss_pred HHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCC
Confidence 333344457889999999999999999986 5789999999999999999999999998899999999977543 589
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
||+|++.... .+...+++++.++|||||++++.++..
T Consensus 143 fD~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 143 YDMIFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp EEEEEEETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred ccEEEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 9999987542 456889999999999999999866543
No 160
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.51 E-value=9.6e-14 Score=153.04 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCcee
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYV 294 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (864)
..+++.|.+.+++.|++|+++++|++|+.+++++.|++.+| +++||.||+|++.+.. .+++. . +..+..
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~-l--------~~~p~r 217 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK-DLLPE-L--------PVQPVR 217 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG-GTSTT-C--------CCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH-hhccc-c--------CceEEE
Confidence 47899999999999999999999999999888899999888 6999999999987642 23331 1 111111
Q ss_pred eceEEEecCCCCCC-CCcCCc-----c-cceecc-CCCCceEEEEec-----ccc-c--------cCccCCCCeEEEcCC
Q 002928 295 YSDIFLHRDKNFMP-RNPAAW-----S-AWNFLG-STGGKVCLTYWL-----NVV-Q--------NIEETRLPFLVTLNP 352 (864)
Q Consensus 295 ~~~~~l~~d~~~~p-~~~~~~-----~-~~~~~~-~~~~~~~~~~~~-----~~~-~--------~l~~~~~~~~~~l~p 352 (864)
.....+.....+.. .....+ + ...|.. .+++...+.... ... . ...+.+.+.+.+++|
T Consensus 218 g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P 297 (372)
T 2uzz_A 218 KVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLP 297 (372)
T ss_dssp CCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECCSSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHSC
T ss_pred EEEEEEEeccccCccccCCEEEEecCCCCeEEecCCCCCeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHCC
Confidence 11111111110100 000011 0 012221 223444443211 000 0 011112223345666
Q ss_pred CCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 353 DHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 353 ~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
.+. .+...|....|.- .+..+.+...+..+|+|++.+++|+|+ ..|..+|+.+|+.|+|+..+
T Consensus 298 ~l~--~~~~~~~g~r~~t----~d~~p~ig~~~~~~~l~~~~G~~g~G~-~~ap~~g~~la~~i~~~~~~ 360 (372)
T 2uzz_A 298 GIG--CCLYGAACTYDNS----PDEDFIIDTLPGHDNTLLITGLSGHGF-KFASVLGEIAADFAQDKKSD 360 (372)
T ss_dssp SCC--CEEEECCCEEEEC----TTSCCCEEEETTEEEEEEECCCCSCCG-GGHHHHHHHHHHHHTTCCCS
T ss_pred CCC--ccceeeEEeeccC----CCCCeEEecCCCCCCEEEEeCCCccch-hccHHHHHHHHHHHhCCCCC
Confidence 654 3344453222211 111122222233579999999999999 99999999999999987644
No 161
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.51 E-value=3.2e-14 Score=157.52 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHH--HHhhcCCCChHHHHhhccCc
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDA--LRMLGNQATFEEKRVLGAFQ 292 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~--~~ll~~~~~~~~~~~l~~~~ 292 (864)
..+.+.|.+.+++.|++|+++++|++|+.++++|.|++.+| +++||.||+|++.... ...++... +..+
T Consensus 164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~--------~~~~ 234 (382)
T 1ryi_A 164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN--------AFLP 234 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC--------CCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCC--------ceec
Confidence 57899999999999999999999999998888898888877 8999999999987532 11222100 0001
Q ss_pred eeeceEEEecCCCCCCCCcCCcccceecc-CCCCceEEEEecc--ccc-cC----ccCCCCeEEEcCCCCCCcceeeeEE
Q 002928 293 YVYSDIFLHRDKNFMPRNPAAWSAWNFLG-STGGKVCLTYWLN--VVQ-NI----EETRLPFLVTLNPDHTPEHTLFKWS 364 (864)
Q Consensus 293 ~~~~~~~l~~d~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~-~l----~~~~~~~~~~l~p~~~~~~~~~~w~ 364 (864)
.....+.+......+ ....+....|.. .++++..+..... ... .. .+.+.+.+.+++|......+...|.
T Consensus 235 ~~g~~~~~~~~~~~~--~~~~~~~~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~ 312 (382)
T 1ryi_A 235 VKGECLSVWNDDIPL--TKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWA 312 (382)
T ss_dssp EEEEEEEEECCSSCC--CSEEEETTEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEEEE
T ss_pred cceEEEEECCCCCCc--cceEEcCCEEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCCceeeEEE
Confidence 111111121111111 112222223332 2334444432111 000 00 0011222334566544444566676
Q ss_pred cCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 365 TSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 365 ~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
...|... +..+.+......+|+|++.+++|+|+ ..|..+|+.+|+.|++...+
T Consensus 313 g~~~~t~----d~~p~ig~~~~~~~l~~~~G~~g~G~-~~a~~~g~~la~~i~~~~~~ 365 (382)
T 1ryi_A 313 GLRPGTK----DGKPYIGRHPEDSRILFAAGHFRNGI-LLAPATGALISDLIMNKEVN 365 (382)
T ss_dssp EEEEECS----SSCCEEEEETTEEEEEEEECCSSCTT-TTHHHHHHHHHHHHTTCCCC
T ss_pred EecccCC----CCCcEeccCCCcCCEEEEEcCCcchH-HHhHHHHHHHHHHHhCCCCC
Confidence 4333211 01111222223579999999999999 99999999999999987643
No 162
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=141.44 Aligned_cols=108 Identities=17% Similarity=0.263 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEch
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCE 704 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~ 704 (864)
++++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++... ..+++++++|+.+++ ++++||+|++..
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 115 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKG 115 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEES
T ss_pred cCCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECc
Confidence 367889999999999999999997 44 899999999999999998753 238999999999887 668999999999
Q ss_pred hhhhhC-------------hhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 705 MIEAVG-------------HDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 705 ~~~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+++|+. .++...+++++.++|||||++++.++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 998875 3467899999999999999999977654
No 163
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.50 E-value=1.7e-13 Score=151.59 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChHHH--HHhhcCCCChHHHHhhcc
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAPDA--LRMLGNQATFEEKRVLGA 290 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~~~--~~ll~~~~~~~~~~~l~~ 290 (864)
...+++.|.+.+++.|++|+++++|++|+.++++|. |++.+| +++||.||+|+..+.. .+.++... .++.
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~------~~~~ 220 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKT------KIPI 220 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCS------CCCC
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCc------CcCC
Confidence 358899999999999999999999999999888887 888887 8999999999987642 22222100 0111
Q ss_pred CceeeceEEEecCCCCCCCCcCCcc---cceecc-CCCCceEEEE-eccccccCc--------cCCCCeEEEcCCCCCCc
Q 002928 291 FQYVYSDIFLHRDKNFMPRNPAAWS---AWNFLG-STGGKVCLTY-WLNVVQNIE--------ETRLPFLVTLNPDHTPE 357 (864)
Q Consensus 291 ~~~~~~~~~l~~d~~~~p~~~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~~l~--------~~~~~~~~~l~p~~~~~ 357 (864)
.+.....+.+....... ..+..++ ...|.. .+++ ..+.. ......... +.+.+.+.+++|.+...
T Consensus 221 ~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~y~~p~~~g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~ 298 (382)
T 1y56_B 221 EPYKHQAVITQPIKRGT-INPMVISFKYGHAYLTQTFHG-GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNL 298 (382)
T ss_dssp EEEEEEEEEECCCSTTS-SCSEEEESTTTTEEEECCSSS-CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHCGGGGGS
T ss_pred CeeEeEEEEEccCCccc-CCCeEEecCCCeEEEEEeCCe-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcCCC
Confidence 11111111111111111 1011221 122332 2233 33331 110000000 00111223456655544
Q ss_pred ceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccccc
Q 002928 358 HTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSC 421 (864)
Q Consensus 358 ~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~ 421 (864)
.+...|....|... +..+.+......+|+|++.+|+|+|+ ..|...|+.+|+.|+|+..
T Consensus 299 ~~~~~~~g~r~~t~----d~~p~ig~~~~~~~~~~~~G~~g~G~-~~a~~~g~~la~~i~~~~~ 357 (382)
T 1y56_B 299 LILRTWAGYYAKTP----DSNPAIGRIEELNDYYIAAGFSGHGF-MMAPAVGEMVAELITKGKT 357 (382)
T ss_dssp EEEEEEEEEEEECT----TSCCEEEEESSSBTEEEEECCTTCHH-HHHHHHHHHHHHHHHHSSC
T ss_pred CceEEEEeccccCC----CCCcEeccCCCCCCEEEEEecCcchH-hhhHHHHHHHHHHHhCCCC
Confidence 56667764433221 11222223334679999999999999 9999999999999998764
No 164
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.50 E-value=7.8e-15 Score=152.46 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCC--CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-
Q 002928 616 RKVSLLIQKARV--SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL- 691 (864)
Q Consensus 616 ~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~- 691 (864)
..+..+++.+.. .++.+|||+|||+|.++..++++ ++++|+|+|+|+++++.|+++++..++.++++++++|+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 344455544432 26789999999999999999987 67899999999999999999999999887899999998762
Q ss_pred --C-C---CCCccEEEEchhhhhhCh-------------hhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccch
Q 002928 692 --P-K---SNKYDRIISCEMIEAVGH-------------DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGF 752 (864)
Q Consensus 692 --~-~---~~~fD~v~s~~~~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 752 (864)
+ + +++||+|+++..+++.+. +....++.++.++|||||.+.+........ . .......+
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~-~-~~l~~~g~ 207 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS-L-QLKKRLRW 207 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH-H-HHGGGBSC
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH-H-hcccceEE
Confidence 2 2 268999999866655431 112356788999999999987643211000 0 00001111
Q ss_pred hhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 753 IKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 753 ~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
+. ...+..+...++.+.+++ +||..+.+..+
T Consensus 208 ~~---~~~~~~~~~~~~~~~l~~-~Gf~~v~~~~~ 238 (254)
T 2h00_A 208 YS---CMLGKKCSLAPLKEELRI-QGVPKVTYTEF 238 (254)
T ss_dssp EE---EEESSTTSHHHHHHHHHH-TTCSEEEEEEE
T ss_pred EE---ECCCChhHHHHHHHHHHH-cCCCceEEEEE
Confidence 11 111334555777777776 89987665544
No 165
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=1.8e-13 Score=134.31 Aligned_cols=134 Identities=13% Similarity=0.226 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
...+.+++.+.+.++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.|+++++..++ ++++++++|+.+..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~ 99 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKL 99 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCC
Confidence 4455777778888899999999999999999999 589999999999999999999999887 48999999987722457
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhc
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTS 775 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~ 775 (864)
+||+|++..+ .+...+++++.++ |||.+++.+.... ...++.+.+.+
T Consensus 100 ~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~-------------------------~~~~~~~~l~~ 146 (183)
T 2yxd_A 100 EFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE-------------------------NAAKIINEFES 146 (183)
T ss_dssp CCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH-------------------------HHHHHHHHHHH
T ss_pred CCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc-------------------------cHHHHHHHHHH
Confidence 8999999987 3468899999999 9999999663211 13455666765
Q ss_pred CCCcEEEEEE
Q 002928 776 SSRLCVEDLE 785 (864)
Q Consensus 776 ~~gf~v~~~~ 785 (864)
.||.++.++
T Consensus 147 -~g~~~~~~~ 155 (183)
T 2yxd_A 147 -RGYNVDAVN 155 (183)
T ss_dssp -TTCEEEEEE
T ss_pred -cCCeEEEEE
Confidence 788877654
No 166
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.50 E-value=7.9e-14 Score=153.39 Aligned_cols=196 Identities=11% Similarity=-0.017 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCC--cEEecCEEEEccChHHHHHhhcCC--CChHHHHhh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDD--FQRVYDGCIMAVHAPDALRMLGNQ--ATFEEKRVL 288 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G--~~~~ad~VV~A~~~~~~~~ll~~~--~~~~~~~~l 288 (864)
...+.+.|.+.++++|++|+++++|++|+.++++ +.|.+.+| .+++||.||+|+..+.. .++... .+.. ..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~~~~---~~ 224 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGIPRD---SI 224 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETSCGG---GS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCCCcc---cc
Confidence 4589999999999999999999999999998766 88999888 47999999999987642 232210 1100 00
Q ss_pred ccCceeeceEEEecCCCCCCCCcCCcc-------cceeccCCCCceEEEEec---ccc-ccC----ccCCCCeEEEcCCC
Q 002928 289 GAFQYVYSDIFLHRDKNFMPRNPAAWS-------AWNFLGSTGGKVCLTYWL---NVV-QNI----EETRLPFLVTLNPD 353 (864)
Q Consensus 289 ~~~~~~~~~~~l~~d~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~~l----~~~~~~~~~~l~p~ 353 (864)
..+....... +..+.. .+.....+. ...+....++...+.... ... ... .+.+.+.+.+++|.
T Consensus 225 ~~i~p~rG~~-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~g~~~iG~t~e~~~~~~~~~~~~~~~~l~~~~~~~~P~ 302 (369)
T 3dme_A 225 PPEYLCKGSY-FTLAGR-APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPA 302 (369)
T ss_dssp CCCEEEEEEE-EECSSS-CSCSSEEEECTTCSSCCCCEEECTTSCEEECCCCEEESSCCCCCCGGGGGGHHHHHHTTCTT
T ss_pred ceeeecceEE-EEECCC-CccCceeecCCCCCCceEEEeCccCCcEEECCCcccccccccccCHHHHHHHHHHHHHHCCC
Confidence 1111111111 111111 011100000 000000112222221100 000 000 01112223446677
Q ss_pred CCCcceeeeEEcCCCCCC-HHHHHHHHhh-hh-hcCCCCeEEEeccCCCCCChhhHhHHHHHHHHh
Q 002928 354 HTPEHTLFKWSTSHPVPS-VAASKASLEL-DH-IQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGM 416 (864)
Q Consensus 354 ~~~~~~~~~w~~~~p~~~-~~~~~~~~~l-~~-~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~i 416 (864)
+....+...|.-..|... ++..+..+.+ .. ....+|+|++.++.++|+ ..|...|+.+|+.|
T Consensus 303 l~~~~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~~~G~-t~ap~~a~~~a~~i 367 (369)
T 3dme_A 303 LPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGL-TASLAIAEETLARL 367 (369)
T ss_dssp CCTTCCEEEEEEEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECCCTTHH-HHHHHHHHHHHHHH
T ss_pred CChhhceecceeccccccCCCCCcCCeEEecccccCCCCEEEEeCCCCchH-hccHHHHHHHHHHh
Confidence 666666777876555431 1111112222 11 235689999999999999 99999999999987
No 167
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.50 E-value=1.8e-13 Score=143.64 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=105.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~ 705 (864)
++++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++++.+++.++++++++|+.+++.+++||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~-~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 467899999999999999999998 44 7999999999999999999999998789999999999876789999999644
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEE
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVED 783 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~ 783 (864)
.....+++++.++|||||.+++.+....... .-....++.+.+.+ +|+.+..
T Consensus 202 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-------------------~~~~~~~i~~~~~~-~G~~~~~ 253 (278)
T 2frn_A 202 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-------------------PREPFETFKRITKE-YGYDVEK 253 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-------------------TTTTHHHHHHHHHH-TTCEEEE
T ss_pred ------hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-------------------cccHHHHHHHHHHH-cCCeeEE
Confidence 2236788999999999999999876532111 01234566666665 8998877
No 168
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.50 E-value=4e-14 Score=141.22 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC---CCCC-ccEEEEc
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQLP---KSNK-YDRIISC 703 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~---~~~~-fD~v~s~ 703 (864)
++.+|||+|||+|.++..++.+...+|+|+|+|+++++.|+++++..++. ++++++++|+.++. .+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 67899999999999999988773469999999999999999999998874 58999999987754 2578 9999998
Q ss_pred hhhhhhChhhHHHHHHHH--HhccccCcEEEEEEecC
Q 002928 704 EMIEAVGHDYMEEFFGCC--ESLLAEHGLLLLQFISV 738 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 738 (864)
..++ . .+...+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8853 3 4678889998 67899999999976543
No 169
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.49 E-value=6.6e-14 Score=138.00 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=97.6
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
...+.+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++++..++.++++++++|+.+..
T Consensus 30 ~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 109 (187)
T 2fhp_A 30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 109 (187)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH
Confidence 34455666663 457889999999999999999887457999999999999999999998888778999999987743
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHH--HhccccCcEEEEEEecC
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCC--ESLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 738 (864)
.+++||+|++...++. ......++.+ .++|||||.+++.....
T Consensus 110 ~~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 110 FYEEKLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHTTCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHhcCCCCCEEEECCCCCc---hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2578999999988543 2456777777 89999999999976543
No 170
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.49 E-value=2e-13 Score=143.57 Aligned_cols=117 Identities=15% Similarity=0.291 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
..++.+++.+. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..+++ +++++++|+.+..++
T Consensus 97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 174 (276)
T 2b3t_A 97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAG 174 (276)
T ss_dssp HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTT
T ss_pred HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhccc
Confidence 45566777766 67789999999999999999977 6789999999999999999999988886 799999998774445
Q ss_pred CCccEEEEch-------------hhhhhCh----------hhHHHHHHHHHhccccCcEEEEE
Q 002928 695 NKYDRIISCE-------------MIEAVGH----------DYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 695 ~~fD~v~s~~-------------~~~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++||+|+++. +++|.|. +.+..+++++.++|||||.+++.
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7899999983 3334321 35688999999999999999984
No 171
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.49 E-value=2.8e-14 Score=165.23 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~ 704 (864)
..+.+|||||||.|.++..+|++ |++|||||+|+.+++.|+..+.+.+.. +|++.++|++++. .+++||+|+|.+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35679999999999999999998 999999999999999999999887743 7999999999874 467999999999
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
|+||+++.+....+..+.+.|+++|+.++..+....
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999995543334456678889999998887776544
No 172
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.49 E-value=5.5e-13 Score=148.78 Aligned_cols=190 Identities=14% Similarity=0.140 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHH--HHHhhcCCCChHHHHhhccC
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPD--ALRMLGNQATFEEKRVLGAF 291 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~--~~~ll~~~~~~~~~~~l~~~ 291 (864)
..+.+.|.+.+++.|++|+++++|++|+.++++ +.|++.+| +++||.||+|+.... +.+.++... +..
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~--------~~~ 244 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFEL--------PIQ 244 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCC--------CEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCC--------Ccc
Confidence 378999999999999999999999999987776 57888888 799999999998764 222222111 111
Q ss_pred ceeeceEEEecCCCCCCCCcCCcc--cceecc-CCCCceEEEEeccccccCc--------cCCCCeEEEcCCCCCCccee
Q 002928 292 QYVYSDIFLHRDKNFMPRNPAAWS--AWNFLG-STGGKVCLTYWLNVVQNIE--------ETRLPFLVTLNPDHTPEHTL 360 (864)
Q Consensus 292 ~~~~~~~~l~~d~~~~p~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~l~p~~~~~~~~ 360 (864)
++.............++ ....+ ...|.. .++++..+........... +.+.+.+.+++|......+.
T Consensus 245 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~ 322 (405)
T 2gag_B 245 SHPLQALVSELFEPVHP--TVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVL 322 (405)
T ss_dssp EEEEEEEEEEEBCSCCC--SEEEETTTTEEEEECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGCEEC
T ss_pred ccceeEEEecCCccccC--ceEEeCCCcEEEEEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCccccCCcc
Confidence 11111111111111111 11111 122222 2345555543221110000 00112233456654444455
Q ss_pred eeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhccccc
Q 002928 361 FKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSC 421 (864)
Q Consensus 361 ~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~ 421 (864)
..|....|... +..+.+... +.+|+|++.+++|+|+ ..|...|+.+|+.|+|...
T Consensus 323 ~~w~g~~~~t~----d~~p~ig~~-~~~~l~~~~G~~g~G~-~~a~~~g~~la~~i~g~~~ 377 (405)
T 2gag_B 323 RTWGGIVDTTM----DASPIISKT-PIQNLYVNCGWGTGGF-KGTPGAGFTLAHTIANDEP 377 (405)
T ss_dssp EEEEEEEEEET----TSCCEEEEC-SSBTEEEEECCGGGCS-TTHHHHHHHHHHHHHHTSC
T ss_pred eEEeeccccCC----CCCCEeccc-CCCCEEEEecCCCchh-hHHHHHHHHHHHHHhCCCC
Confidence 56664333211 111111111 1579999999999999 9999999999999998653
No 173
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.49 E-value=2.2e-13 Score=135.89 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=92.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEch
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCE 704 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~ 704 (864)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+++.++|+++++|..+.. ++++||+|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 357899999999999999999998 346899999999999999999999999989999999987765 334799999877
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|.-. -...++.+..+.|+++|+|+++..
T Consensus 99 mGg~----lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 99 MGGR----LIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp ECHH----HHHHHHHHTGGGGTTCCEEEEEES
T ss_pred CchH----HHHHHHHHHHHHhCcCCEEEEECC
Confidence 6543 367889999999999999999663
No 174
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.49 E-value=1.4e-13 Score=141.60 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=89.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccEEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK----SNKYDRII 701 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~----~~~fD~v~ 701 (864)
..++.+|||||||+|..++.++.. ++++|+++|+|+.+++.|+++++..++. +|+++++|+++++. +++||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence 357889999999999999999987 7889999999999999999999999986 69999999988762 37899999
Q ss_pred EchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 702 SCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 702 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
|..+ .++..+++.+.++|||||++++.
T Consensus 157 s~a~------~~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 157 ARAV------APLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp EESS------CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCc------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 9743 34689999999999999999874
No 175
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.49 E-value=1.9e-13 Score=149.08 Aligned_cols=131 Identities=12% Similarity=0.229 Sum_probs=104.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002928 599 SCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (864)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (864)
..+.|.....+... +.+++.+...++.+|||+|||+|.++..+++. ++++|+|+|+|+.+++.|+++++.+++
T Consensus 198 ~pg~Fs~~~~d~~~------~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl 271 (375)
T 4dcm_A 198 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 271 (375)
T ss_dssp CTTCTTCSSCCHHH------HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG
T ss_pred CCCcccCCcccHHH------HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC
Confidence 45556544333322 35677788778899999999999999999998 579999999999999999999998887
Q ss_pred CC--CeEEEEcccCCCCCCCCccEEEEchhhhh---hChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 678 QD--HIRLYLCDYRQLPKSNKYDRIISCEMIEA---VGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 678 ~~--~v~~~~~d~~~~~~~~~fD~v~s~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.+ +++++.+|+.+..++++||+|+++..+++ ++......+++++.++|||||++++..
T Consensus 272 ~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 272 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp GGGGGEEEEECSTTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCceEEEEechhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 53 58889999887546679999999988875 333345678999999999999999954
No 176
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.49 E-value=2.1e-13 Score=151.82 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+++++|++|+.++++|.|.+.+| +++||.||+|+..+.
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence 47888999999999999999999999999888899988777 799999999998763
No 177
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.49 E-value=2.3e-15 Score=155.26 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+++++++||+|++..+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred cCCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 47899999999999999999997 79999999999999999999999988668999999998887667999999999999
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
|.+ +....+.+++++|+|||.+++.
T Consensus 156 ~~~--~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPD--YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGG--GGGSSSBCTTTSCSSCHHHHHH
T ss_pred Ccc--hhhhHHHHHHhhcCCcceeHHH
Confidence 984 4455778899999999997764
No 178
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.49 E-value=1.2e-13 Score=149.15 Aligned_cols=112 Identities=26% Similarity=0.299 Sum_probs=96.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (864)
+.+.+.+.+.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.++++++++|+.+++ ++++|
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 45555566788999999999999999999997335999999996 99999999999998789999999999987 55899
Q ss_pred cEEEEchh---hhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 698 DRIISCEM---IEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 698 D~v~s~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
|+|++..+ +.|. .++..+++++.++|||||+++.
T Consensus 133 D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 133 DVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEEc
Confidence 99999874 4443 4678899999999999999983
No 179
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.49 E-value=2.9e-13 Score=134.97 Aligned_cols=106 Identities=22% Similarity=0.225 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCCCCCCccEEEEch
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYR-QLPKSNKYDRIISCE 704 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~~~~fD~v~s~~ 704 (864)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+++.++|+++++|.. .+++.++||+|+..+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 357899999999999999999998 456899999999999999999999999889999999974 455333799999876
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|-. +-...++.++.+.|+|+|+++++..
T Consensus 93 ~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 93 MGG----RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp ECH----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CCh----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 633 3368899999999999999999654
No 180
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.49 E-value=2e-13 Score=148.89 Aligned_cols=118 Identities=17% Similarity=0.319 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 615 MRKVSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
...++.+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++..++ +++++++|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhcc
Confidence 344455555542 347889999999999999999998 88999999999999999999998887 4899999999887
Q ss_pred -CCCCccEEEEchhhhh---hChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 -KSNKYDRIISCEMIEA---VGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++++||+|+++..+++ ...+....+++++.++|||||++++..
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 4589999999999888 334678899999999999999999964
No 181
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.48 E-value=9.3e-14 Score=139.85 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISC 703 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~ 703 (864)
.++.+|||||||+|.++..+|+. ++.+|+|+|+|+++++.|++++...+++ +++++++|+.+++ ++++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 36789999999999999999998 6889999999999999999999988885 7999999998864 46789999986
Q ss_pred hhhhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..-.+.... ....+++++.++|||||.+++.+
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 543222100 13689999999999999999854
No 182
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.48 E-value=1e-13 Score=152.01 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CCeEEEE
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYA-------EMKVKEAGLQ-DHIRLYL 685 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a-------~~~~~~~~l~-~~v~~~~ 685 (864)
...+..+++.+.++++.+|||||||+|.++..+|+..+ .+|+|||+|+.+++.| +++++..|+. +++++++
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 34567888888999999999999999999999999744 5899999999999998 8888888853 5899999
Q ss_pred cccCCCC-----CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 686 CDYRQLP-----KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 686 ~d~~~~~-----~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+|....+ ..++||+|+++..+ +. +++...++++.++|||||++++.+...+
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cCccccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 8644321 24689999987666 33 4678899999999999999999754433
No 183
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=99.48 E-value=5.9e-16 Score=159.68 Aligned_cols=189 Identities=17% Similarity=0.218 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K- 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~- 693 (864)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++. ..++++++++|+.+++ +
T Consensus 16 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCccc
Confidence 34568888899889999999999999999999998 7899999999999999988764 2348999999999987 3
Q ss_pred CCCccEEEEchh-----------hhhhChhhHHHHH----HHHHhccccCcEEEEEEecCCCcccccccCccchhhhccc
Q 002928 694 SNKYDRIISCEM-----------IEAVGHDYMEEFF----GCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIF 758 (864)
Q Consensus 694 ~~~fD~v~s~~~-----------~~~~~~~~~~~~l----~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (864)
+++| .|+++.. ++|. .....++ +.+.++|||||.+.+..... ....+..+++
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~--~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~----------~~~~~~~~v~ 158 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFES--RASDIYLIVEEGFYKRTLDIHRTLGLLLHTQ----------VSIQQLLKLP 158 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHC--CCEEEEEEEESSHHHHHHCGGGSHHHHTTTT----------BCCCEEEEEC
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCC--CCCeEEEEeeHHHHHHHhCCCCchhhhheeh----------eeEEEEEEEC
Confidence 3678 6777521 2222 1223445 77999999999988732111 1122334556
Q ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEEEe--------ccccHHHHHHHHH--------------HHHH-HhHHHHHhhcCC
Q 002928 759 PGGCLPSLNRITSAMTSSSRLCVEDLEN--------IGIHYYQTLRCWR--------------KNFL-EKQSKIRALGFS 815 (864)
Q Consensus 759 p~~~~~~~~~~~~~l~~~~gf~v~~~~~--------~~~~y~~tl~~w~--------------~~~~-~~~~~~~~~g~~ 815 (864)
|++..|.+. ..-.++.... -..+|..+++.|. +++. ..+....++. .
T Consensus 159 ~~~f~P~p~---------v~s~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~~~r~~~l~-~ 228 (245)
T 1yub_A 159 AECFHPKPK---------VNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTIT-Y 228 (245)
T ss_dssp CTTSBSSCC---------SCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSHHHHHHHHTTCSCTTSCC-S
T ss_pred chhccCCCC---------ceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhcchhhhchHHHHHHcCCCCCCChhhCC-H
Confidence 666666521 1112222111 1245888999886 2332 1122233443 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002928 816 EKFIRTWEYYFDYCAA 831 (864)
Q Consensus 816 ~~~~r~w~~y~~~~~~ 831 (864)
++|.|+|++|+++|++
T Consensus 229 ~~f~~l~~~~~~~~~~ 244 (245)
T 1yub_A 229 EQVLSIFNSYLLFNGR 244 (245)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999999974
No 184
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=8.2e-14 Score=140.76 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
.....+++.+.+.++.+|||||||+|.++..+++..+ .+|+++|+|+++++.|++++...++. ++++.++|+....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC
Confidence 4456778888889999999999999999999999843 89999999999999999999888875 6999999986543
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
.+++||+|++..+++|++ +++.++|||||++++.....
T Consensus 143 ~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCC
Confidence 357899999999999985 37899999999999976443
No 185
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.48 E-value=4.9e-13 Score=134.57 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=100.2
Q ss_pred HHHHHHc---CCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 619 SLLIQKA---RVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 619 ~~~~~~l---~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
..++..+ .+++|++|||+|||+|..+.++++. +.++|+|+|+|+.|++...+..++. .++.++++|++...
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~ 139 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQS 139 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGG
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchh
Confidence 3444444 4899999999999999999999987 4679999999999986665555443 38999999987643
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHH
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRI 769 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~ 769 (864)
..++||+|++.... + .....+...+.++|||||++++..-...... .+.|.. ...+.
T Consensus 140 ~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~-------------t~~~~e---~~~~~ 199 (232)
T 3id6_C 140 YKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDV-------------TKDPKE---IYKTE 199 (232)
T ss_dssp TTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------CCSSS---STTHH
T ss_pred hhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCccc-------------CCCHHH---HHHHH
Confidence 24689999998543 1 2234455667779999999999632211000 001111 12334
Q ss_pred HHHHhcCCCcEEEEEEecc
Q 002928 770 TSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.|.+ +||++.+..++.
T Consensus 200 ~~~L~~-~gf~~~~~~~l~ 217 (232)
T 3id6_C 200 VEKLEN-SNFETIQIINLD 217 (232)
T ss_dssp HHHHHH-TTEEEEEEEECT
T ss_pred HHHHHH-CCCEEEEEeccC
Confidence 556665 799999887764
No 186
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.48 E-value=9.9e-14 Score=152.06 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=99.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+.+...+.+.++.+|||||||+|.++..+++. ++ +|+|+|+| +|++.|+++++..++.++++++++|+++++.+++|
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 34445556788999999999999999999998 55 99999999 99999999999999988899999999998844899
Q ss_pred cEEEEchhhhhhCh-hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 698 DRIISCEMIEAVGH-DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 698 D~v~s~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|+|++..+.+++.. ..+..+++++.++|||||.+++...
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99999776665533 3578899999999999999987543
No 187
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.48 E-value=8.4e-14 Score=151.10 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=94.6
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEc
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISC 703 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~ 703 (864)
..+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++++..++.++++++++|+++++ ++++||+|++.
T Consensus 62 ~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~ 140 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE 140 (349)
T ss_dssp HHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred cccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence 3456789999999999999999999844599999999 599999999999999888999999999988 66899999998
Q ss_pred hhhhhh-ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 704 EMIEAV-GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 704 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.+.+++ ....+..+++++.++|||||+++..
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 765444 2246889999999999999999753
No 188
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.47 E-value=1.4e-13 Score=143.10 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSN 695 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (864)
...++..+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++..+++++++++++|+.+..+++
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 457788888999999999999999999999987 378999999999999999999999998877999999998765667
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+||+|++. . .++..+++++.++|||||++++..
T Consensus 162 ~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 162 NVDHVILD-----L--PQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp SEEEEEEC-----S--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEEC-----C--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 89999984 3 345678999999999999999854
No 189
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.47 E-value=1.4e-13 Score=144.59 Aligned_cols=136 Identities=16% Similarity=0.231 Sum_probs=105.9
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~~~ 694 (864)
.+.+++.+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. +. ++++++++|+.+..++
T Consensus 99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISD 177 (275)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCS
T ss_pred HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcC
Confidence 346777888899999999999999999999987 4789999999999999999999887 74 4899999999884356
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMT 774 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~ 774 (864)
++||+|++ |+ .++..+++++.++|||||++++.+... ....++.+.+.
T Consensus 178 ~~fD~Vi~-----~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~~~~l~ 225 (275)
T 1yb2_A 178 QMYDAVIA-----DI--PDPWNHVQKIASMMKPGSVATFYLPNF-------------------------DQSEKTVLSLS 225 (275)
T ss_dssp CCEEEEEE-----CC--SCGGGSHHHHHHTEEEEEEEEEEESSH-------------------------HHHHHHHHHSG
T ss_pred CCccEEEE-----cC--cCHHHHHHHHHHHcCCCCEEEEEeCCH-------------------------HHHHHHHHHHH
Confidence 78999998 45 345789999999999999999965321 01345556666
Q ss_pred cCCCcEEEEEEec
Q 002928 775 SSSRLCVEDLENI 787 (864)
Q Consensus 775 ~~~gf~v~~~~~~ 787 (864)
+ .||...++...
T Consensus 226 ~-~Gf~~~~~~~~ 237 (275)
T 1yb2_A 226 A-SGMHHLETVEL 237 (275)
T ss_dssp G-GTEEEEEEEEE
T ss_pred H-CCCeEEEEEEE
Confidence 5 89988776553
No 190
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.47 E-value=1.1e-13 Score=140.97 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-C-CCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDY-RQLP-K-SNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~-~-~~~fD~v~s~~ 704 (864)
+++.+|||||||+|.++..+++. +++|+|+|+|+.+++.|+++ ..+++++++|+ ..++ + +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 67899999999999999999998 88999999999999999987 13799999999 5566 4 7899999997
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVEDL 784 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~ 784 (864)
.++..+++++.++|||||+++. .. ...+..++.+.+.+ +||.+..+
T Consensus 119 -------~~~~~~l~~~~~~LkpgG~l~~--~~------------------------~~~~~~~~~~~l~~-~Gf~~~~~ 164 (226)
T 3m33_A 119 -------RGPTSVILRLPELAAPDAHFLY--VG------------------------PRLNVPEVPERLAA-VGWDIVAE 164 (226)
T ss_dssp -------SCCSGGGGGHHHHEEEEEEEEE--EE------------------------SSSCCTHHHHHHHH-TTCEEEEE
T ss_pred -------CCHHHHHHHHHHHcCCCcEEEE--eC------------------------CcCCHHHHHHHHHH-CCCeEEEE
Confidence 2457889999999999999991 00 01134456666775 89998876
Q ss_pred Eec
Q 002928 785 ENI 787 (864)
Q Consensus 785 ~~~ 787 (864)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 654
No 191
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.47 E-value=2.4e-13 Score=137.10 Aligned_cols=107 Identities=24% Similarity=0.348 Sum_probs=90.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISC 703 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~ 703 (864)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ ++++++++|+.+++ ++++||+|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 46789999999999999999998 678999999999999999999998888 48999999998865 45789999998
Q ss_pred hhhhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 704 EMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 704 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
....+.... ....+++++.++|||||.+++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 654332110 23689999999999999999854
No 192
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.46 E-value=1.2e-13 Score=140.91 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=89.4
Q ss_pred HHH---HHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----
Q 002928 619 SLL---IQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ---- 690 (864)
Q Consensus 619 ~~~---~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---- 690 (864)
..+ ++.+.++++.+|||+|||+|.++..+++. +..+|+|+|+|+++++.|+++++.. .++.++++|+.+
T Consensus 61 ~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~ 137 (230)
T 1fbn_A 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEY 137 (230)
T ss_dssp HHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGG
T ss_pred HHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccc
Confidence 455 55666788999999999999999999998 3479999999999999999887544 489999999988
Q ss_pred CCCCCCccEEEEchhhhhhChh-hHHHHHHHHHhccccCcEEEEE
Q 002928 691 LPKSNKYDRIISCEMIEAVGHD-YMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 691 ~~~~~~fD~v~s~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++..++||+|+ ++++.. ....+++++.++|||||++++.
T Consensus 138 ~~~~~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 ANIVEKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp TTTSCCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 66337899999 334322 3377899999999999999996
No 193
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.46 E-value=9.1e-12 Score=131.08 Aligned_cols=57 Identities=35% Similarity=0.532 Sum_probs=54.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcceeEeeCCeeeccceeecc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFN 57 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~ 57 (864)
.||+|||||+|||+||+.|+++|++|+||||++.+||++.+.+..+..+|.|++.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~ 59 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence 389999999999999999999999999999999999999999999999999988774
No 194
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.46 E-value=1.9e-13 Score=149.15 Aligned_cols=154 Identities=8% Similarity=0.055 Sum_probs=115.7
Q ss_pred HHHc--CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 002928 622 IQKA--RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYD 698 (864)
Q Consensus 622 ~~~l--~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (864)
++.+ .++++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +.+ .||
T Consensus 179 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p-~~D 248 (352)
T 1fp2_A 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP-NAD 248 (352)
T ss_dssp HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC-CCS
T ss_pred HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC-Ccc
Confidence 4444 4567789999999999999999988 6889999999 9999888752 269999999866 422 399
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhcccc---CcEEEEEEecCCCccccc-ccCccchhh--hcccCCCCCCCHHHHHHH
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAE---HGLLLLQFISVPDQCYDE-HRLSPGFIK--EYIFPGGCLPSLNRITSA 772 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-~~~~~~~~~--~~i~p~~~~~~~~~~~~~ 772 (864)
+|++..++||++++....++++++++||| ||++++.++..+...... ......+.. ...+. +...+.+++.+.
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-g~~~t~~e~~~l 327 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN-GKERNEEEWKKL 327 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGT-CCCEEHHHHHHH
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhcc-CCCCCHHHHHHH
Confidence 99999999999876667999999999999 999999988765432110 000000111 01122 556788999888
Q ss_pred HhcCCCcEEEEEEec
Q 002928 773 MTSSSRLCVEDLENI 787 (864)
Q Consensus 773 l~~~~gf~v~~~~~~ 787 (864)
+++ +||+++++...
T Consensus 328 l~~-aGf~~~~~~~~ 341 (352)
T 1fp2_A 328 FIE-AGFQHYKISPL 341 (352)
T ss_dssp HHH-TTCCEEEEEEE
T ss_pred HHH-CCCCeeEEEec
Confidence 886 89998887653
No 195
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.46 E-value=4.1e-13 Score=135.03 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=91.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEch
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK-SNKYDRIISCE 704 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~v~s~~ 704 (864)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+++.++|+++++|..+... +.+||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 357899999999999999999998 3458999999999999999999999998899999999877653 33699999876
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+.- +-...++.+..+.|+++|+|+++..
T Consensus 99 mGg----~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 99 MGG----TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp ECH----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred Cch----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 544 3367889999999999999999753
No 196
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.46 E-value=1.9e-13 Score=139.33 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCeEEEEcCCc--hHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 002928 611 EVAQMRKVSLLIQKARVS-KGHEVLEIGCGW--GTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYL 685 (864)
Q Consensus 611 ~~aq~~~~~~~~~~l~~~-~~~~vLDiGcG~--G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~ 685 (864)
..+.+..+.+.++.+... ...+|||||||+ +.++..++++ ++++|+++|.|+.|++.|++++...+ ..++++++
T Consensus 59 a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~ 137 (277)
T 3giw_A 59 MRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVE 137 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEE
Confidence 344566677777777533 447999999997 5556666654 78999999999999999999886543 24799999
Q ss_pred cccCCCC-----C--CCCcc-----EEEEchhhhhhChhh-HHHHHHHHHhccccCcEEEEEEecCCCcccccccCccch
Q 002928 686 CDYRQLP-----K--SNKYD-----RIISCEMIEAVGHDY-MEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGF 752 (864)
Q Consensus 686 ~d~~~~~-----~--~~~fD-----~v~s~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 752 (864)
+|+++.+ + .+.|| .|+++.++||+++.+ +..+++++.+.|+|||+|++.+.+..... .........
T Consensus 138 aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-~~~~~~~~~ 216 (277)
T 3giw_A 138 ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-QEVGRVARE 216 (277)
T ss_dssp CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-HHHHHHHHH
T ss_pred ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-HHHHHHHHH
Confidence 9998852 1 34566 699999999998754 68999999999999999999887654321 000011111
Q ss_pred hhhcccCCCCCCCHHHHHHHHhcCCCcEEEE
Q 002928 753 IKEYIFPGGCLPSLNRITSAMTSSSRLCVED 783 (864)
Q Consensus 753 ~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~ 783 (864)
.+..-.| ..+.+.+++...+ .||++++
T Consensus 217 ~~~~g~p-~~~rs~~ei~~~f---~Glelve 243 (277)
T 3giw_A 217 YAARNMP-MRLRTHAEAEEFF---EGLELVE 243 (277)
T ss_dssp HHHTTCC-CCCCCHHHHHHTT---TTSEECT
T ss_pred HHhcCCC-CccCCHHHHHHHh---CCCcccC
Confidence 1111112 2456788886654 3898654
No 197
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.46 E-value=4.6e-13 Score=139.39 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=110.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCC-C
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~-~ 693 (864)
...++..+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. + .+++++.++|+.+.+ +
T Consensus 85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC
T ss_pred HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC
Confidence 357788888999999999999999999999997 3789999999999999999999887 7 458999999999885 5
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHH
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAM 773 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l 773 (864)
+++||+|++. . .+...+++++.++|||||++++.+... ....++.+.+
T Consensus 164 ~~~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~~~-------------------------~~~~~~~~~l 211 (258)
T 2pwy_A 164 EAAYDGVALD-----L--MEPWKVLEKAALALKPDRFLVAYLPNI-------------------------TQVLELVRAA 211 (258)
T ss_dssp TTCEEEEEEE-----S--SCGGGGHHHHHHHEEEEEEEEEEESCH-------------------------HHHHHHHHHH
T ss_pred CCCcCEEEEC-----C--cCHHHHHHHHHHhCCCCCEEEEEeCCH-------------------------HHHHHHHHHH
Confidence 6789999983 3 245688999999999999999965321 0134556667
Q ss_pred hcCCCcEEEEEEe
Q 002928 774 TSSSRLCVEDLEN 786 (864)
Q Consensus 774 ~~~~gf~v~~~~~ 786 (864)
.+ .||...++.+
T Consensus 212 ~~-~gf~~~~~~~ 223 (258)
T 2pwy_A 212 EA-HPFRLERVLE 223 (258)
T ss_dssp TT-TTEEEEEEEE
T ss_pred HH-CCCceEEEEE
Confidence 75 8998776554
No 198
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.46 E-value=2.5e-13 Score=131.42 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=96.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
.++.+|||+|||+|.++..+++. + +|+|+|+|+++++. ..+++++++|+.+..++++||+|+++..++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 56779999999999999999997 5 99999999999988 237999999998743558999999998888
Q ss_pred hhChh-------hHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCCcE
Q 002928 708 AVGHD-------YMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSRLC 780 (864)
Q Consensus 708 ~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~ 780 (864)
+.++. +...+++++.+.| |||.+++..... ....++.+.+.+ +||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------------~~~~~l~~~l~~-~gf~ 142 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-------------------------NRPKEVLARLEE-RGYG 142 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------GCHHHHHHHHHH-TTCE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------------CCHHHHHHHHHH-CCCc
Confidence 65332 4467888888888 999999966432 134566666765 8999
Q ss_pred EEEEEec
Q 002928 781 VEDLENI 787 (864)
Q Consensus 781 v~~~~~~ 787 (864)
+..+...
T Consensus 143 ~~~~~~~ 149 (170)
T 3q87_B 143 TRILKVR 149 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 8876653
No 199
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.46 E-value=2.2e-13 Score=139.33 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++....+ +++++++|+.+.. .
T Consensus 56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc
Confidence 355668888888899999999999999999999997 6899999999999999999987655 7999999998733 4
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+++||+|++..+++|+.+ ++.++|||||++++.....
T Consensus 132 ~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcCC
Confidence 578999999999999853 5889999999999976543
No 200
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.46 E-value=3.5e-13 Score=135.07 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=84.1
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCccE
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL----PKSNKYDR 699 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~~fD~ 699 (864)
+.++++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+.++++.. .++.++++|+.+. +..++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeE
Confidence 567889999999999999999999873 479999999999988777766543 3799999998774 33478999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
|++.. ..+ .+...++++++++|||||++++..
T Consensus 130 V~~~~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDI-AQK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECC-CST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEec-cCh---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99972 221 334566999999999999999963
No 201
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.45 E-value=2.4e-13 Score=140.35 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=92.9
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CCCCccE
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---KSNKYDR 699 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~~fD~ 699 (864)
...++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++|+++++|+.+. + ..++||+
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 3456789999999999999999997 3 7899999999999999999999999988999999998763 3 2358999
Q ss_pred EEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 700 IISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 700 v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
|++... ..+...+++++.++|||||++++.++..
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 140 IFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 998653 2456889999999999999999976653
No 202
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.45 E-value=2.3e-13 Score=136.53 Aligned_cols=99 Identities=17% Similarity=0.344 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+++ +++++++|+.+.+++++||+|++...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999987 6789999999999999999999988886 49999999998876678999998642
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.++..+++++.++|||||.+++.
T Consensus 142 ----~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 ----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34689999999999999999985
No 203
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.45 E-value=2.1e-13 Score=136.11 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=92.2
Q ss_pred HHHHHcCC-CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCCC
Q 002928 620 LLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LP-KSNK 696 (864)
Q Consensus 620 ~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~-~~~~ 696 (864)
.+++.+.. .++.+|||+|||+|.++..++++...+|+|+|+|+++++.|+++++..++ ++++++++|+.+ ++ .+++
T Consensus 44 ~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~ 122 (202)
T 2fpo_A 44 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTP 122 (202)
T ss_dssp HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCC
T ss_pred HHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCC
Confidence 34444433 26789999999999999998887335999999999999999999999888 589999999877 34 4578
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHh--ccccCcEEEEEEec
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCES--LLAEHGLLLLQFIS 737 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 737 (864)
||+|++...++ . .....+++.+.+ +|||||++++....
T Consensus 123 fD~V~~~~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 123 HNIVFVDPPFR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEEEEECCSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCEEEECCCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 99999987743 3 456788888865 59999999997654
No 204
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.45 E-value=1.4e-13 Score=139.88 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----C-CCCcc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-----K-SNKYD 698 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~-~~~fD 698 (864)
..++.+|||||||+|..+..+++. + +++|+++|+++++++.|+++++..++.++++++++|+.+.. . .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 456789999999999999999998 3 78999999999999999999999999888999999986642 1 26799
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+|++.... .....+++++.++|||||.+++.++..
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99987653 345789999999999999999876554
No 205
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.44 E-value=1.2e-12 Score=137.80 Aligned_cols=149 Identities=13% Similarity=0.189 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC----CCeEEE
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITL-SEEQLKYAEMKV-----KEAGLQ----DHIRLY 684 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~-s~~~~~~a~~~~-----~~~~l~----~~v~~~ 684 (864)
...+.+.......++.+|||||||+|.+++.+++. +. +|+|+|+ |+++++.|++++ +..++. +++++.
T Consensus 66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 44455555555678889999999999999999987 55 9999999 899999999998 555554 478999
Q ss_pred EcccCCCC-------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccc---c--CcEEEEEEecCCCcccccccCccch
Q 002928 685 LCDYRQLP-------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLA---E--HGLLLLQFISVPDQCYDEHRLSPGF 752 (864)
Q Consensus 685 ~~d~~~~~-------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~ 752 (864)
..|..+.. .+++||+|++..+++|. ++...+++.+.++|| | ||++++........
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~----------- 211 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH----------- 211 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc-----------
Confidence 87765532 25789999999999997 678999999999999 9 99987732211100
Q ss_pred hhhcccCCCCCCCHHHHHHHHhcCCC-cEEEEEEecc
Q 002928 753 IKEYIFPGGCLPSLNRITSAMTSSSR-LCVEDLENIG 788 (864)
Q Consensus 753 ~~~~i~p~~~~~~~~~~~~~l~~~~g-f~v~~~~~~~ 788 (864)
+ .....++.+.+.+ .| |+++.+....
T Consensus 212 ~---------~~~~~~~~~~l~~-~G~f~v~~~~~~~ 238 (281)
T 3bzb_A 212 L---------AERDLAFFRLVNA-DGALIAEPWLSPL 238 (281)
T ss_dssp -------------CTHHHHHHHH-STTEEEEEEECCC
T ss_pred c---------chhHHHHHHHHHh-cCCEEEEEecccc
Confidence 0 0112345555665 79 9998876543
No 206
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.44 E-value=3.1e-13 Score=145.39 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=96.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYD 698 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (864)
.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++.+++.++++++++|+.+++ ++++||
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 107 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEE
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCccc
Confidence 444445566788999999999999999999733599999999 699999999999999889999999999987 558999
Q ss_pred EEEEchhhhhh-ChhhHHHHHHHHHhccccCcEEEEE
Q 002928 699 RIISCEMIEAV-GHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 699 ~v~s~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+|++..+.+++ ....+..++.++.++|||||+++..
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 99998665544 2246789999999999999999853
No 207
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.44 E-value=3.1e-13 Score=149.97 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCcee
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYV 294 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (864)
..+++.|.+.+++.|++|+++++|++|+.+++++.|++.+| +++||.||+|+..... .+++.. .. .++..
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~~-g~-------~~pl~ 219 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS-KLLSKL-NL-------DIPLQ 219 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH-HHGGGG-TE-------ECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHH-HHhhhh-cc-------CCceE
Confidence 58899999999999999999999999999888898988777 7999999999987643 333310 00 01111
Q ss_pred ec-eEEEecCCC---CC--CCCcCC-ccc---ceecc-CCCC-ceEEEEecc----cccc----C--c----cCCCCeEE
Q 002928 295 YS-DIFLHRDKN---FM--PRNPAA-WSA---WNFLG-STGG-KVCLTYWLN----VVQN----I--E----ETRLPFLV 348 (864)
Q Consensus 295 ~~-~~~l~~d~~---~~--p~~~~~-~~~---~~~~~-~~~~-~~~~~~~~~----~~~~----l--~----~~~~~~~~ 348 (864)
+. ...+..+.. +. ...+.. +.. ..|.. .+++ +..+..... .... . . +.+.+.+.
T Consensus 220 ~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (389)
T 2gf3_A 220 PYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLE 299 (389)
T ss_dssp EEEEEEEEECCCHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCcccccccccCCEEEEeCCCCcEEEcCCCCCCcEEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHH
Confidence 11 111111111 00 000000 100 12221 2233 444432110 0000 0 0 01122234
Q ss_pred EcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccccc
Q 002928 349 TLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKSCA 422 (864)
Q Consensus 349 ~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~~~ 422 (864)
+++|.... .+...|....|... +..+.+......+|+|++.+++|+|+ ..|...|+.+|+.|+|...+
T Consensus 300 ~~~P~l~~-~~~~~w~g~r~~t~----D~~p~ig~~~~~~~l~~a~G~~g~G~-~~ap~~g~~la~~i~~~~~~ 367 (389)
T 2gf3_A 300 EYMPGANG-ELKRGAVCMYTKTL----DEHFIIDLHPEHSNVVIAAGFSGHGF-KFSSGVGEVLSQLALTGKTE 367 (389)
T ss_dssp HHCGGGCS-CEEEEEEEEEEECT----TSCCEEEEETTEEEEEEEECCTTCCG-GGHHHHHHHHHHHHHHSCCS
T ss_pred HhCCCCCC-CceEEEEEEeccCC----CCCeEEccCCCCCCEEEEECCccccc-cccHHHHHHHHHHHcCCCCC
Confidence 45665444 45556654333211 11122222233579999999999999 99999999999999987644
No 208
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.44 E-value=2.2e-13 Score=141.53 Aligned_cols=115 Identities=14% Similarity=0.237 Sum_probs=94.6
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcccCCCC----
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE---AGLQDHIRLYLCDYRQLP---- 692 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~---~~l~~~v~~~~~d~~~~~---- 692 (864)
+...+..+++.+|||+|||+|.++..++++ ++.+|+|+|+++++++.|++++.. .++.++++++++|+.+..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 344556778889999999999999999998 568999999999999999999988 888778999999998871
Q ss_pred ----CCCCccEEEEchhhhh----------------hChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 ----KSNKYDRIISCEMIEA----------------VGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ----~~~~fD~v~s~~~~~~----------------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++++||+|+++..+.. .....+..+++++.++|||||++++..
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3578999999844332 222347889999999999999999843
No 209
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.44 E-value=2.1e-13 Score=139.64 Aligned_cols=113 Identities=23% Similarity=0.309 Sum_probs=96.4
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C--C
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-K--S 694 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~--~ 694 (864)
.+...+...++.+|||||||+|..+..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+. + . +
T Consensus 45 ~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 124 (233)
T 2gpy_A 45 SLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELY 124 (233)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTS
T ss_pred HHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccC
Confidence 3444444567889999999999999999998 57899999999999999999999999877899999999875 3 2 5
Q ss_pred CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++||+|++....+ +...+++++.++|||||++++.++.
T Consensus 125 ~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 125 PLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp CCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 7899999976643 4689999999999999999997544
No 210
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.44 E-value=1.6e-13 Score=142.17 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHc---CCCCC---------
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEMKVKEA---GLQDH--------- 680 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~---~l~~~--------- 680 (864)
..++.+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++... ++.++
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 45566666665556789999999999999999986 3679999999999999999887655 43222
Q ss_pred ----------------eE-------------EEEcccCCCC------CCCCccEEEEchhhhhhCh-------hhHHHHH
Q 002928 681 ----------------IR-------------LYLCDYRQLP------KSNKYDRIISCEMIEAVGH-------DYMEEFF 718 (864)
Q Consensus 681 ----------------v~-------------~~~~d~~~~~------~~~~fD~v~s~~~~~~~~~-------~~~~~~l 718 (864)
++ +.++|+.+.. ...+||+|+++..+.+... +....++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 66 9999987753 2348999999877665532 5577999
Q ss_pred HHHHhccccCcEEEEEE
Q 002928 719 GCCESLLAEHGLLLLQF 735 (864)
Q Consensus 719 ~~~~~~LkpgG~l~i~~ 735 (864)
+++.++|||||++++..
T Consensus 198 ~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 198 RSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhcCCCcEEEEeC
Confidence 99999999999999843
No 211
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.44 E-value=4.8e-13 Score=136.92 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=88.5
Q ss_pred HHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC---CC-CCC
Q 002928 622 IQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ---LP-KSN 695 (864)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~-~~~ 695 (864)
++.+.++++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+.++++.. .+++++++|+.+ ++ .++
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence 34566788999999999999999999998 3579999999999998888887765 489999999987 33 457
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+||+|++... ..+....+++++.++|||||++++..
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999999654 22344667899999999999999954
No 212
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.43 E-value=2.1e-13 Score=132.19 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=90.8
Q ss_pred HHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C----
Q 002928 620 LLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---- 692 (864)
Q Consensus 620 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---- 692 (864)
.+++.+. ++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++..++ +++++++|+.+. +
T Consensus 30 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~ 106 (171)
T 1ws6_A 30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKA 106 (171)
T ss_dssp HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhc
Confidence 4444443 237889999999999999999997 67799999999999999999998887 899999998773 2
Q ss_pred CCCCccEEEEchhhhhhChhhHHHHHHHHH--hccccCcEEEEEEecCC
Q 002928 693 KSNKYDRIISCEMIEAVGHDYMEEFFGCCE--SLLAEHGLLLLQFISVP 739 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~~ 739 (864)
..++||+|++..+++ - +....++.+. ++|||||.+++......
T Consensus 107 ~~~~~D~i~~~~~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 107 QGERFTVAFMAPPYA-M---DLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TTCCEEEEEECCCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred cCCceEEEEECCCCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 134899999998765 1 2355666666 99999999999776543
No 213
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.43 E-value=2.2e-13 Score=138.70 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=92.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C-C---CCc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K-S---NKY 697 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~-~---~~f 697 (864)
..++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++++++++|+.+.. . . ++|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 346789999999999999999997 3 78999999999999999999999999888999999986542 1 1 789
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
|+|++... ..+...+++++.++|||||++++.++...
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99997654 24568899999999999999999776543
No 214
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.42 E-value=8.4e-14 Score=140.53 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 615 MRKVSLLIQKARV-SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
...++.+++.+.. .++.+|||+|||+|.++..+++. ++++|+|+|+|+.+++.|++++...++ +++++++|+.+..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~ 92 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWL 92 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhh
Confidence 3556677777765 78899999999999999999998 567999999999999999999988776 7899999987722
Q ss_pred CC-----CCccEEEEchhhh------hhChh------------------hHHHHHHHHHhccccCcEEEEE
Q 002928 693 KS-----NKYDRIISCEMIE------AVGHD------------------YMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 693 ~~-----~~fD~v~s~~~~~------~~~~~------------------~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
++ ++||+|+++..+. ++..+ .+..+++++.++|||||++++.
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 33 8999999964432 22211 1278899999999999995443
No 215
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=145.65 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=90.7
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
..+|.+|||||||+|.++..+|+....+|+|||.|+ +++.|++.++.+++.++|+++.+|++++..+++||+|+|..+-
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 347889999999999999999887335899999996 8999999999999999999999999998855899999996543
Q ss_pred hhhCh-hhHHHHHHHHHhccccCcEEEEE
Q 002928 707 EAVGH-DYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 707 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
..+.. ..++.++....++|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 33322 36889999999999999998753
No 216
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.42 E-value=3.4e-13 Score=138.19 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYR-QLPK 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~ 693 (864)
......+++.+.++++.+|||||||+|.++..+++..+.+|+++|+|+++++.|+++++..++. +++++.+|+. .++.
T Consensus 77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 155 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP 155 (235)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCC
Confidence 3455677888888999999999999999999999983389999999999999999999988886 6999999973 2333
Q ss_pred CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.++||+|++..+++++++ ++.++|||||++++....
T Consensus 156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 346999999999998853 688999999999996654
No 217
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=136.47 Aligned_cols=108 Identities=16% Similarity=0.267 Sum_probs=84.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH------cCCCCCeEEEEcccCC-CC---CCC
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE------AGLQDHIRLYLCDYRQ-LP---KSN 695 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~------~~l~~~v~~~~~d~~~-~~---~~~ 695 (864)
..++.+|||||||+|.++..+|+. ++..|+|||+|+.|++.|+++++. .++ .+|+++++|+.+ ++ +++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 456779999999999999999988 678999999999999999988764 344 489999999987 44 468
Q ss_pred CccEEEEchhhhhhChh------hHHHHHHHHHhccccCcEEEEEE
Q 002928 696 KYDRIISCEMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+||.|++...-.+.... ....+++++.++|||||.+++.+
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99999986543332100 01479999999999999999854
No 218
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.41 E-value=7.7e-14 Score=143.17 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=94.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C-----CCCc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--K-----SNKY 697 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~-----~~~f 697 (864)
..++.+|||||||+|..+..+++. .+++|+++|+|+++++.|+++++..++.++|+++++|+.+.. . +++|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 345679999999999999999996 378999999999999999999999999889999999987653 1 4799
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
|+|++... ..+...+++++.++|||||.+++.++....
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 99998764 245688999999999999999998766443
No 219
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.41 E-value=5.2e-13 Score=145.99 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=118.4
Q ss_pred HHHHHc--CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 620 LLIQKA--RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 620 ~~~~~l--~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
.+++.+ .++++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++ . .+++++.+|+.+ +.+ +
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~ 251 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP-S 251 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC-C
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC-C
Confidence 455555 4557789999999999999999998 6789999999 788877764 2 269999999977 522 4
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhcccc---CcEEEEEEecCCCcccc----cccCccchhhhcccCCCCCCCHHHH
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAE---HGLLLLQFISVPDQCYD----EHRLSPGFIKEYIFPGGCLPSLNRI 769 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~i~p~~~~~~~~~~ 769 (864)
||+|++..++||++++....++++++++||| ||++++.++..+..... ......++.. ...+++...+.+++
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g~~~t~~e~ 330 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM-LTMFLGKERTKQEW 330 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH-HHHHSCCCEEHHHH
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH-hccCCCCCCCHHHH
Confidence 9999999999999877677999999999999 99999988776543211 0000111111 11345677799999
Q ss_pred HHHHhcCCCcEEEEEEec
Q 002928 770 TSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 770 ~~~l~~~~gf~v~~~~~~ 787 (864)
.+.+++ +||+++++...
T Consensus 331 ~~ll~~-aGf~~~~~~~~ 347 (358)
T 1zg3_A 331 EKLIYD-AGFSSYKITPI 347 (358)
T ss_dssp HHHHHH-TTCCEEEEEEE
T ss_pred HHHHHH-cCCCeeEEEec
Confidence 988886 89999887664
No 220
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.41 E-value=6.6e-12 Score=143.82 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCccHHHHHHhcCCCHHHHHHHHhhhhhcccCCChhhhhcCCHHHH----HHHHhhcCCCccCCCCcEEEecCChHHHHH
Q 002928 144 RNETLGQFVETRGYSELFQKAYLVPVCGSIWSCSSEKVMSCSAFSV----LSFCRNHHALQIFGRPQWLTVRSRSRSYVD 219 (864)
Q Consensus 144 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~ 219 (864)
...++.+|+++.+..+.....+...+ +++.... .+.... ..++.. ...++...+.++.||++.+++
T Consensus 313 d~~S~~d~L~~~~ls~~L~~~L~~~l--al~~~~~-----~pa~~~l~~i~~~l~s---l~~yg~sg~~yp~GG~g~L~q 382 (650)
T 1vg0_A 313 EGTTFSEYLKTQKLTPNLQYFVLHSI--AMTSETT-----SCTVDGLKATKKFLQC---LGRYGNTPFLFPLYGQGELPQ 382 (650)
T ss_dssp TTSBHHHHHTTSSSCHHHHHHHHHHT--TC--CCS-----CBHHHHHHHHHHHHHH---TTSSSSSSEEEETTCTTHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHH--hccCCCC-----CchhHHHHHHHHHHHH---HHhhccCceEEeCCchhHHHH
Confidence 57899999999988888766554432 2222211 111111 222221 111333588899999999999
Q ss_pred HHHHHHhhcCceEEeCcceEEEEEeC--CeE-EEEECCCcEEecCEEEEc
Q 002928 220 KVIELLESLGCQIKTGCEVRSVLQYG--EGR-IEIRGDDFQRVYDGCIMA 266 (864)
Q Consensus 220 ~La~~~~~~G~~I~~~~~V~~I~~~~--~~~-~V~~~~G~~~~ad~VV~A 266 (864)
+|++.+...|++|+++++|.+|..++ +++ .|.+.+|+++.||+||++
T Consensus 383 aL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~ 432 (650)
T 1vg0_A 383 CFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432 (650)
T ss_dssp HHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred HHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence 99999999999999999999999887 665 454577989999999984
No 221
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.41 E-value=1e-12 Score=138.29 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=109.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+..++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 57778888999999999999999999999987 3689999999999999999999988886689999999887654568
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcC
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSS 776 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~ 776 (864)
||+|++. . .++..+++++.++|+|||.+++.+.+. ....++.+.+.+
T Consensus 182 ~D~V~~~-----~--~~~~~~l~~~~~~L~pgG~l~~~~~~~-------------------------~~~~~~~~~l~~- 228 (277)
T 1o54_A 182 VDALFLD-----V--PDPWNYIDKCWEALKGGGRFATVCPTT-------------------------NQVQETLKKLQE- 228 (277)
T ss_dssp EEEEEEC-----C--SCGGGTHHHHHHHEEEEEEEEEEESSH-------------------------HHHHHHHHHHHH-
T ss_pred cCEEEEC-----C--cCHHHHHHHHHHHcCCCCEEEEEeCCH-------------------------HHHHHHHHHHHH-
Confidence 9999984 3 245688999999999999999965321 013445566665
Q ss_pred CCcEEEEEEe
Q 002928 777 SRLCVEDLEN 786 (864)
Q Consensus 777 ~gf~v~~~~~ 786 (864)
.||...++..
T Consensus 229 ~gf~~~~~~~ 238 (277)
T 1o54_A 229 LPFIRIEVWE 238 (277)
T ss_dssp SSEEEEEEEC
T ss_pred CCCceeEEEE
Confidence 7998766544
No 222
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.40 E-value=5.3e-13 Score=144.69 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKY 697 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (864)
+.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...++ .++++.+|+.+.+ +++|
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~f 262 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV-KGRF 262 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC-CSCE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc-cCCe
Confidence 46677776667789999999999999999998 457999999999999999999998877 4678899987764 5789
Q ss_pred cEEEEchhhhh---hChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 698 DRIISCEMIEA---VGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 698 D~v~s~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
|+|+++.++++ ...++...+++++.++|||||.+++...
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 99999998875 2235678999999999999999999654
No 223
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.40 E-value=8.1e-13 Score=141.06 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=96.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
.+...+.++++.+|||+|||+|..+..+++. .+++|+|+|+|+.+++.++++++..++. +++++++|+.+++ .+++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCC
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccccccc
Confidence 4455667889999999999999999999987 2479999999999999999999998886 7999999998876 4578
Q ss_pred ccEEEEc------hhhhhhCh--------------hhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 697 YDRIISC------EMIEAVGH--------------DYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 697 fD~v~s~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
||+|++. +++.+.++ +....+++++.++|||||++++.+.+.
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9999984 23332221 112688999999999999999977654
No 224
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.40 E-value=5e-13 Score=134.93 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=97.4
Q ss_pred HHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 002928 621 LIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYD 698 (864)
Q Consensus 621 ~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (864)
+++.+. ..++.+|||||||+|.++..++ .+|+|+|+|+. +++++++|+.+++ ++++||
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD 117 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVD 117 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEE
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEe
Confidence 444443 4677899999999999998773 68999999987 4678999999987 678899
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSR 778 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~g 778 (864)
+|++..++++ .++..+++++.++|||||.+++.++.. ..++..++.+.+.+ +|
T Consensus 118 ~v~~~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~-----------------------~~~~~~~~~~~l~~-~G 170 (215)
T 2zfu_A 118 VAVFCLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSS-----------------------RFEDVRTFLRAVTK-LG 170 (215)
T ss_dssp EEEEESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGG-----------------------GCSCHHHHHHHHHH-TT
T ss_pred EEEEehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCC-----------------------CCCCHHHHHHHHHH-CC
Confidence 9999999964 568999999999999999999976432 11367888888886 89
Q ss_pred cEEEEEEecc
Q 002928 779 LCVEDLENIG 788 (864)
Q Consensus 779 f~v~~~~~~~ 788 (864)
|+++......
T Consensus 171 f~~~~~~~~~ 180 (215)
T 2zfu_A 171 FKIVSKDLTN 180 (215)
T ss_dssp EEEEEEECCS
T ss_pred CEEEEEecCC
Confidence 9998866543
No 225
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.40 E-value=1.2e-12 Score=133.15 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=93.8
Q ss_pred HHHHHHHcC--CCCCCeEEEEcCCchHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcccC
Q 002928 618 VSLLIQKAR--VSKGHEVLEIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEMKVKEAGL----QDHIRLYLCDYR 689 (864)
Q Consensus 618 ~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~ 689 (864)
...+++.+. ++++.+|||||||+|..+..+++..+ .+|+++|+|+.+++.+++++...++ .++++++++|+.
T Consensus 64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 143 (226)
T 1i1n_A 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 143 (226)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence 345666665 78899999999999999999998733 6999999999999999999887654 358999999988
Q ss_pred CCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 690 QLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 690 ~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+.. .+++||+|++...++++. +++.++|||||++++...+
T Consensus 144 ~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 144 MGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred cCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 765 457899999998887763 4789999999999997544
No 226
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.39 E-value=8e-13 Score=141.66 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=93.8
Q ss_pred HHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCC-C---
Q 002928 620 LLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQD-HIRLYLCDYRQLP-K--- 693 (864)
Q Consensus 620 ~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~-~--- 693 (864)
.+.+.+. ..++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|+++++.+++.+ +++++++|+.++. .
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~ 221 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER 221 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh
Confidence 3444443 456789999999999999999997 7799999999999999999999999875 5999999987754 1
Q ss_pred -CCCccEEEEchh----------hhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 -SNKYDRIISCEM----------IEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 -~~~fD~v~s~~~----------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.++||+|++... +++. +++..+++++.++|||||.+++....
T Consensus 222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 222 RGSTYDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HTCCBSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred cCCCceEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 578999999543 2233 46789999999999999998876543
No 227
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.39 E-value=5.2e-13 Score=134.26 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CCCCccEEEEc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-KSNKYDRIISC 703 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~~~fD~v~s~ 703 (864)
.++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++++++++|+.+. + .++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 35679999999999999999987 3 7899999999999999999999888877899999998664 3 345 9999987
Q ss_pred hhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 704 EMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
.. ..+...+++++.++|||||++++.+...
T Consensus 134 ~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 134 CD-----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp TT-----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CC-----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 43 2457899999999999999999976543
No 228
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.39 E-value=4e-13 Score=138.26 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C------CCCc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-K------SNKY 697 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~------~~~f 697 (864)
.++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++|+++++|+.+. + . +++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 45679999999999999999997 4 7899999999999999999999999877999999998764 2 1 5789
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
|+|++... ..+...+++++.++|||||++++.+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 99998743 2457899999999999999999976543
No 229
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.39 E-value=2.2e-13 Score=141.13 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=102.9
Q ss_pred HHHHHHHHHcCCC-CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcccCCCC-
Q 002928 616 RKVSLLIQKARVS-KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRL-YLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~-~~~d~~~~~- 692 (864)
.++..+++.+.+. ++.+|||||||+|.++..+++....+|+|+|+|++|++.+.++. .++.. ...|++.++
T Consensus 71 ~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEP 144 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCG
T ss_pred HHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecch
Confidence 4677888888764 57899999999999999999973359999999999999864421 14433 334555554
Q ss_pred ---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhc-cc--CCCCCCCH
Q 002928 693 ---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEY-IF--PGGCLPSL 766 (864)
Q Consensus 693 ---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-i~--p~~~~~~~ 766 (864)
+..+||.|++..+++++ ..+|.++.++|||||++++.. .|.. +. ....+.+. +. |..+....
T Consensus 145 ~~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqf--e~---~~~~~~~~G~vrd~~~~~~~~ 212 (291)
T 3hp7_A 145 VDFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQF--EA---GREQIGKNGIVRESSIHEKVL 212 (291)
T ss_dssp GGCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGG--TS---CGGGCC-CCCCCCHHHHHHHH
T ss_pred hhCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--Cccc--cc---ChhhcCCCCccCCHHHHHHHH
Confidence 23459999998887765 689999999999999999842 2211 10 00111110 00 00011245
Q ss_pred HHHHHHHhcCCCcEEEEEEe
Q 002928 767 NRITSAMTSSSRLCVEDLEN 786 (864)
Q Consensus 767 ~~~~~~l~~~~gf~v~~~~~ 786 (864)
+++.+.+.+ +||.+..+..
T Consensus 213 ~~v~~~~~~-~Gf~v~~~~~ 231 (291)
T 3hp7_A 213 ETVTAFAVD-YGFSVKGLDF 231 (291)
T ss_dssp HHHHHHHHH-TTEEEEEEEE
T ss_pred HHHHHHHHH-CCCEEEEEEE
Confidence 667777775 8999988765
No 230
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.39 E-value=1.8e-12 Score=133.98 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=92.5
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
.++|.+|||+|||+|.+++.+|+...++|+++|+|+.+++.++++++.+++.++++++++|+++++..+.||.|++....
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 46899999999999999999999855799999999999999999999999999999999999999877899999987432
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
....++..+.++|||||.+.++++..
T Consensus 203 ------~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 12456777889999999998877653
No 231
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.38 E-value=1.5e-12 Score=136.69 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
.++.+++.+...++.+|||+|||+|.++..+++.++++|+|+|+|+++++.|+++++..++.++++++++|+.+..+ ++
T Consensus 111 lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~ 189 (284)
T 1nv8_A 111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EK 189 (284)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GG
T ss_pred HHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cc
Confidence 44555555554567899999999999999999876789999999999999999999999998789999999877332 57
Q ss_pred c---cEEEEchhhh-----------hhCh------hhHHHHHHHHH-hccccCcEEEEE
Q 002928 697 Y---DRIISCEMIE-----------AVGH------DYMEEFFGCCE-SLLAEHGLLLLQ 734 (864)
Q Consensus 697 f---D~v~s~~~~~-----------~~~~------~~~~~~l~~~~-~~LkpgG~l~i~ 734 (864)
| |+|+|+.... |-+. .+...+++++. +.|+|||.+++.
T Consensus 190 f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 190 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 8 9999972211 2211 12237899999 999999999984
No 232
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.38 E-value=1.6e-12 Score=137.12 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-C-CCCCeEEEEcccCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEA-G-LQDHIRLYLCDYRQLP 692 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~-l~~~v~~~~~d~~~~~ 692 (864)
....++..+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. + +.++++++++|+.+.+
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3457788888999999999999999999999986 4789999999999999999999887 4 4568999999998876
Q ss_pred -CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 693 -KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 -~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++++||+|++. ++ ++..+++++.++|||||++++...
T Consensus 167 ~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 56789999983 32 346889999999999999999664
No 233
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.37 E-value=3.1e-12 Score=132.19 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=97.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (864)
...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++....++.+++++..+|+.+.. ++++
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 347777888899999999999999999999998 88999999999999999999998888779999999998876 5678
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
||+|++. . .++..+++++.++|||||++++...
T Consensus 159 ~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 159 FHAAFVD-----V--REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp BSEEEEC-----S--SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ccEEEEC-----C--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999983 3 2456889999999999999999653
No 234
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.37 E-value=6.1e-13 Score=136.67 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=92.1
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---C-----
Q 002928 625 ARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P---K----- 693 (864)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~----- 693 (864)
+...++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++++++++|+.+. + .
T Consensus 56 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 56 TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred HHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 34457889999999999999999998 3 6899999999999999999999988876799999997653 2 1
Q ss_pred --------C-CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 694 --------S-NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 694 --------~-~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+ ++||+|++.... ++...+++++.++|||||++++.++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2 789999998554 345789999999999999999976543
No 235
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.37 E-value=1.8e-12 Score=135.75 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=95.3
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK----- 693 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~----- 693 (864)
+...+.++++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.++++++..++. +++++++|+.+++.
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHT
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhc
Confidence 344567789999999999999999999986 44 79999999999999999999999886 89999999987652
Q ss_pred CCCccEEEEch------hhhh--------hC--hhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 694 SNKYDRIISCE------MIEA--------VG--HDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 694 ~~~fD~v~s~~------~~~~--------~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
+++||+|++.- ++.+ +. .+....+++++.++|||||++++.+.+.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 57899999872 2221 00 0245789999999999999999987654
No 236
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.37 E-value=1.3e-12 Score=135.29 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCchH----HHHHHHHh-c----CCEEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 002928 629 KGHEVLEIGCGWGT----LAIEIVKQ-T----GCKYTGITLSEEQLKYAEMKVKE-----------------------AG 676 (864)
Q Consensus 629 ~~~~vLDiGcG~G~----~~~~la~~-~----~~~v~gid~s~~~~~~a~~~~~~-----------------------~~ 676 (864)
++.+|||+|||+|. +++.+++. + +.+|+|+|+|+++++.|++.+-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 67777765 3 46999999999999999986410 00
Q ss_pred -------CCCCeEEEEcccCCCC-C-CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 677 -------LQDHIRLYLCDYRQLP-K-SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 677 -------l~~~v~~~~~d~~~~~-~-~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
+..+|+|.++|+.+.+ + .++||+|+|.+++.|+.++...++++++++.|||||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1136999999998854 2 5789999999999999887789999999999999999998
No 237
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.37 E-value=2.7e-13 Score=153.40 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEE---------------eCCeE-EEEECCCcEE--ecCEEEEccChHHHHHh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQ---------------YGEGR-IEIRGDDFQR--VYDGCIMAVHAPDALRM 275 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~---------------~~~~~-~V~~~~G~~~--~ad~VV~A~~~~~~~~l 275 (864)
...+++.|.+.+++.|++|+++++|++|+. +++++ .|.+.+| ++ .||.||+|+..+.. ++
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l 257 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RL 257 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HH
Confidence 358999999999999999999999999988 55564 7888888 78 99999999987743 23
Q ss_pred hcCCCChHHHHhhccCceeeceEEEecCCC-C---CC------C--CcCCcc-cceecc-CCC-CceEEEEeccc--ccc
Q 002928 276 LGNQATFEEKRVLGAFQYVYSDIFLHRDKN-F---MP------R--NPAAWS-AWNFLG-STG-GKVCLTYWLNV--VQN 338 (864)
Q Consensus 276 l~~~~~~~~~~~l~~~~~~~~~~~l~~d~~-~---~p------~--~~~~~~-~~~~~~-~~~-~~~~~~~~~~~--~~~ 338 (864)
++..-. .++..+.....+.+..... + ++ . -+..++ ...|.+ .++ ++.++...... ...
T Consensus 258 ~~~~g~-----~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~~~~~ 332 (448)
T 3axb_A 258 LNPLGI-----DTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFA 332 (448)
T ss_dssp HGGGTC-----CCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTTSCBC
T ss_pred HHHcCC-----CCcccccceEEEEeCCcccccccccccccccccCCCceEEcCCceEEeecCCCCeEEEecCCcccCCcc
Confidence 331000 0011111111111111110 0 00 0 001111 122332 233 44554332210 000
Q ss_pred C-----------ccCCCCeEEEcCCCCCCcceeeeEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHh
Q 002928 339 I-----------EETRLPFLVTLNPDHTPEHTLFKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLK 407 (864)
Q Consensus 339 l-----------~~~~~~~~~~l~p~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~ 407 (864)
. .+.+.+.+.+++|.+....+...|....|..++ +..+.+.... +|+|++.+++|+|+ ..|..
T Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~---d~~p~ig~~~--~~l~~a~G~~g~G~-~~ap~ 406 (448)
T 3axb_A 333 LEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISFD---ANPVVFEPWE--SGIVVAAGTSGSGI-MKSDS 406 (448)
T ss_dssp CCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEETT---SSCEEECGGG--CSEEEEECCTTCCG-GGHHH
T ss_pred cccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEeccccC---CCCcEeeecC--CCEEEEECCCchhH-hHhHH
Confidence 0 111223344567765555566677654443111 1112222222 79999999999999 99999
Q ss_pred HHHHHHHHhcccccc
Q 002928 408 AGMIAAHGMLGKSCA 422 (864)
Q Consensus 408 sG~~aA~~ilg~~~~ 422 (864)
.|+.+|+.|+|+..+
T Consensus 407 ~g~~la~~i~~~~~~ 421 (448)
T 3axb_A 407 IGRVAAAVALGMESV 421 (448)
T ss_dssp HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCcc
Confidence 999999999987754
No 238
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.35 E-value=4.5e-12 Score=138.14 Aligned_cols=119 Identities=26% Similarity=0.277 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
.....++..+..+++.+|||+|||+|.+++.++.. ++.+|+|+|+|+.+++.|+++++..|++ ++++.++|+.+++
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc
Confidence 34456777788889999999999999999999997 3489999999999999999999999997 8999999999987
Q ss_pred CCCCccEEEEchhhhhh-C-----hhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 KSNKYDRIISCEMIEAV-G-----HDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~-~-----~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+.+.||+|+++..+... + .+.+..+++++.++|||||++++.+
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 55679999997543221 1 1235789999999999999999954
No 239
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.35 E-value=1.4e-12 Score=133.55 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C------CCCc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P-K------SNKY 697 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~------~~~f 697 (864)
.++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++++++++|+.+. + . +++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 45679999999999999999997 4 7899999999999999999999999977899999998664 2 1 4789
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+|++... ..+...+++++.++|||||.+++.+..
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99998743 245789999999999999999987654
No 240
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.34 E-value=1.9e-12 Score=131.87 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=92.8
Q ss_pred HHHHHHHHc--CCCCCCeEEEEcCCchHHHHHHHHhcC-------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEE
Q 002928 617 KVSLLIQKA--RVSKGHEVLEIGCGWGTLAIEIVKQTG-------CKYTGITLSEEQLKYAEMKVKEAGL----QDHIRL 683 (864)
Q Consensus 617 ~~~~~~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~-------~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~ 683 (864)
....+++.+ .++++.+|||||||+|.++..+++..+ .+|+++|+++++++.|++++...++ .+++++
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 345666666 478899999999999999999998633 5999999999999999999877551 238999
Q ss_pred EEcccCCCC-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 684 YLCDYRQLP-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 684 ~~~d~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+++|..+.. ..++||+|++...++|+. +++.++|||||++++...
T Consensus 150 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 150 VEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 999988733 337899999999998874 578999999999999654
No 241
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.34 E-value=3.3e-12 Score=135.61 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcccCCCC---CCCCccE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE---AGLQDHIRLYLCDYRQLP---KSNKYDR 699 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~---~~l~~~v~~~~~d~~~~~---~~~~fD~ 699 (864)
.+++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++.. .....+++++.+|+.++. .+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356789999999999999999987 457999999999999999998742 122358999999987754 3678999
Q ss_pred EEEchhhhhhChhhH--HHHHHHHHhccccCcEEEEEE
Q 002928 700 IISCEMIEAVGHDYM--EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 700 v~s~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 735 (864)
|++.....+.+...+ ..++++++++|||||+++++.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999776554332222 689999999999999999964
No 242
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.34 E-value=3.3e-12 Score=130.11 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=86.8
Q ss_pred HHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCC
Q 002928 622 IQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL----PKSN 695 (864)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~ 695 (864)
++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+++++.++++++.. .+++++++|+.+. +.++
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccC
Confidence 444457889999999999999999999873 479999999999999999887654 4899999999873 2346
Q ss_pred CccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 696 KYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 696 ~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+||+|++... .......+++++.++|||||.+++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999998754 1123345699999999999999997
No 243
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.34 E-value=2.7e-12 Score=130.77 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=93.1
Q ss_pred HHHHHHc--CCCCCCeEEEEcCCchHHHHHHHHhcC------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEc
Q 002928 619 SLLIQKA--RVSKGHEVLEIGCGWGTLAIEIVKQTG------CKYTGITLSEEQLKYAEMKVKEAGL----QDHIRLYLC 686 (864)
Q Consensus 619 ~~~~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~------~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~ 686 (864)
..+++.+ .++++.+|||||||+|.++..+++..+ ++|+++|+|+++++.|+++++..++ .++++++++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 4556665 478899999999999999999998733 5999999999999999999988773 348999999
Q ss_pred ccCCCC-----CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 687 DYRQLP-----KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 687 d~~~~~-----~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
|+.+.. ..++||+|++...++++ ++++.++|||||++++....
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 988753 34689999999988876 36789999999999997654
No 244
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=2.9e-12 Score=133.91 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=92.7
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
.++++.+|||+|||+|.++..+++. .+++|+|+|+|+++++.|+++++.+++. +++++++|+.+.+..++||+|++..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECC
Confidence 3678899999999999999999998 4569999999999999999999999886 7999999998884346899999986
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
.. +...++.++.++|||||.+++.+...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 53 45678999999999999999987654
No 245
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.33 E-value=3.5e-12 Score=124.25 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=114.1
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCcc
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----KSNKYD 698 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD 698 (864)
..+++++|.+|||||||. +++|+|++|++.|+++.. .+++++++|+.+++ ++++||
T Consensus 6 ~~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD 65 (176)
T 2ld4_A 6 ADFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFD 65 (176)
T ss_dssp TTTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred hccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEe
Confidence 345678999999999996 239999999999998853 25899999998876 367899
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhcCCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKEYIFPGGCLPSLNRITSAMTSSSR 778 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~l~~~~g 778 (864)
+|++..+++|+. .++..++++++++|||||++++......... . .....+..++.+.+.+ +|
T Consensus 66 ~V~~~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~l~~-aG 127 (176)
T 2ld4_A 66 IILSGLVPGSTT-LHSAEILAEIARILRPGGCLFLKEPVETAVD-----N-----------NSKVKTASKLCSALTL-SG 127 (176)
T ss_dssp EEEECCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----S-----------SSSSCCHHHHHHHHHH-TT
T ss_pred EEEECChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEcccccccc-----c-----------ccccCCHHHHHHHHHH-CC
Confidence 999999999992 2368999999999999999999544321100 0 1122467888888886 89
Q ss_pred cEEEEEEeccccHHHHHHHHHHHHHHhHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcccEEEEEEEcCCCC
Q 002928 779 LCVEDLENIGIHYYQTLRCWRKNFLEKQSKIRALGFSEKFIRTWEYYFDYCAAGFKSRTLGDYQIVFSRPSNV 851 (864)
Q Consensus 779 f~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~~~~~~~~~~~ 851 (864)
| +. +...... .+.....+.|.. ..++....+....++++||.-.
T Consensus 128 f-i~-~~~~~~~----------------------~~~~~~~~~~~~-----~~g~~~~~~~~~~~~a~Kp~~~ 171 (176)
T 2ld4_A 128 L-VE-VKELQRE----------------------PLTPEEVQSVRE-----HLGHESDNLLFVQITGKKPNFE 171 (176)
T ss_dssp C-EE-EEEEEEE----------------------CCCHHHHHHHHH-----HTCCCCSSEEEEEEEEECCCSS
T ss_pred C-cE-eecCccc----------------------CCCHHHHHHHHH-----HhcccCCceEEEEEeccCCccc
Confidence 9 65 4443211 122222333321 2244445677899999999643
No 246
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.33 E-value=1e-12 Score=134.27 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C--CCCCc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL---P--KSNKY 697 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~--~~~~f 697 (864)
.++.+|||||||+|..+..+++. ++++|+|||+|+++++.|+ ++.++|+++++|+.+. + .+.+|
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~f 153 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAH 153 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCC
Confidence 35679999999999999999986 4789999999999999887 1235899999999885 4 33479
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHh-ccccCcEEEEEEe
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCES-LLAEHGLLLLQFI 736 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~~~ 736 (864)
|+|++... |. ++..+++++.+ +|||||++++.++
T Consensus 154 D~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 154 PLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 99998765 32 56889999997 9999999999664
No 247
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.32 E-value=1.7e-12 Score=132.58 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C----CC--CCcc
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P----KS--NKYD 698 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~----~~--~~fD 698 (864)
.++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++++++++|+.+. + .+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 45679999999999999999987 3 6899999999999999999999989877899999997552 2 12 7899
Q ss_pred EEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 699 RIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 699 ~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+|++.... .++..+++++.++|||||.+++.++...
T Consensus 151 ~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 99987542 4568899999999999999999765543
No 248
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.32 E-value=4.3e-11 Score=145.49 Aligned_cols=56 Identities=18% Similarity=0.032 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+++.|++.++++|++|+++++|++|+.+++++ .|.|.+| +++||.||+|+..+.
T Consensus 151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 4799999999999999999999999999988886 6888877 899999999998875
No 249
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.32 E-value=5.2e-12 Score=130.23 Aligned_cols=107 Identities=19% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCeEEEEcccCC-CC---C
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA--------GLQDHIRLYLCDYRQ-LP---K 693 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--------~l~~~v~~~~~d~~~-~~---~ 693 (864)
++++.+|||||||+|.++..+++. ++.+|+|||+|+.+++.|+++++.. ++. +++++++|+.+ ++ .
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhcc
Confidence 457889999999999999999998 5679999999999999999998765 664 89999999887 44 3
Q ss_pred CCCccEEEEchhhhhhChh------hHHHHHHHHHhccccCcEEEEE
Q 002928 694 SNKYDRIISCEMIEAVGHD------YMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
.+++|.|+....-.+.... -...+++++.++|||||.+++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 5789999865321111000 0158999999999999999984
No 250
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.31 E-value=2.8e-12 Score=130.78 Aligned_cols=107 Identities=13% Similarity=0.169 Sum_probs=91.3
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C-C---CCc
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K-S---NKY 697 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~-~---~~f 697 (864)
..++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++++++++|+.+.. . . ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 456789999999999999999987 3 68999999999999999999999998789999999986542 1 1 689
Q ss_pred cEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 698 DRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 698 D~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
|+|++... ..+...+++++.++|||||.+++.++..
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99999654 2456889999999999999999976543
No 251
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.30 E-value=7.3e-12 Score=124.84 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=84.2
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 002928 617 KVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 617 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (864)
++..+.+++. ++++.+|||||||+|.++..++++ + +++|+|+|+|+.+ .. .+++++++|+.+.+
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDN 76 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTS
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchh
Confidence 4556666665 578899999999999999999988 3 5899999999831 12 37999999998764
Q ss_pred --------------------------CCCCccEEEEchhhhhhChh--h-------HHHHHHHHHhccccCcEEEEEEe
Q 002928 693 --------------------------KSNKYDRIISCEMIEAVGHD--Y-------MEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 --------------------------~~~~fD~v~s~~~~~~~~~~--~-------~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++++||+|++..++++.+.. + ...+++++.++|||||.+++..+
T Consensus 77 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 77 MNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp SCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 34689999998876654321 1 12478999999999999998654
No 252
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.30 E-value=5.6e-12 Score=132.03 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|+++. .++.+..+|+.+++ ++++||+|++..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57889999999999999999997 5789999999999999998764 27899999999988 6789999999765
Q ss_pred hhhhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
. ..++++.++|||||++++.+...
T Consensus 158 ~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 P---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred h---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 2 35789999999999999977654
No 253
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.30 E-value=8.4e-12 Score=124.12 Aligned_cols=106 Identities=8% Similarity=0.120 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMI 706 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~ 706 (864)
.+..+|||||||+|.++..++.. +.++|+++|+++.+++.+++++...|+ +.++.+.|+..-++.++||+|++.-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence 44679999999999999999888 788999999999999999999999887 489999998877777899999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 707 EAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+|+.++.....+ ++.+.|+|+|.++-...
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 999655555667 89999999999987543
No 254
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.30 E-value=3.8e-11 Score=120.23 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=86.8
Q ss_pred HHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEE
Q 002928 623 QKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIIS 702 (864)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s 702 (864)
......++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++ +++++++|+.+++ ++||+|++
T Consensus 43 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~ 118 (207)
T 1wy7_A 43 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIM 118 (207)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEE
T ss_pred HHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEE
Confidence 3345667899999999999999999987334899999999999999999988877 7999999999986 58999999
Q ss_pred chhhhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 703 CEMIEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
+..+++........+++++.++| |+.++
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence 98887765444567899999998 55443
No 255
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.29 E-value=9.3e-12 Score=134.72 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----------CCCCeEEEE
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAG----------LQDHIRLYL 685 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~----------l~~~v~~~~ 685 (864)
...++..+.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...+ +.+++++++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 4567777788999999999999999999999873 3899999999999999999988632 335899999
Q ss_pred cccCCCC---CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 686 CDYRQLP---KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 686 ~d~~~~~---~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+|+.+.. ++++||+|++... ++..+++++.++|||||++++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9998863 4568999998532 224488999999999999998654
No 256
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.29 E-value=5.1e-12 Score=132.81 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC---C-CCCeEEEEcccCCCC--CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG---L-QDHIRLYLCDYRQLP--KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~---l-~~~v~~~~~d~~~~~--~~~~fD~v 700 (864)
+++.+|||||||+|..+..+++. +..+|+++|+|+++++.|++++...+ + ..+++++++|+.+.. .+++||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 45679999999999999999987 45789999999999999999876542 2 348999999987754 45789999
Q ss_pred EEchhhhhhChhhH--HHHHHHHHhccccCcEEEEEEe
Q 002928 701 ISCEMIEAVGHDYM--EEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 701 ~s~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++...-...+...+ ..+++++.++|||||+++++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 99654332222222 7899999999999999999763
No 257
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.29 E-value=2.7e-12 Score=136.87 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCC------chHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCG------WGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCD 687 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG------~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (864)
..++.++..+.. ++.+||||||| +|+.+..++++ ++++|+|||+|++|.. ...+|+++++|
T Consensus 204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GD 272 (419)
T 3sso_A 204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGD 272 (419)
T ss_dssp HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECC
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEec
Confidence 345566666653 46799999999 77778888776 6899999999999731 12489999999
Q ss_pred cCCCC-C------CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 688 YRQLP-K------SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 688 ~~~~~-~------~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+.+++ . +++||+|++... ++. .+...+|++++++|||||++++.++.
T Consensus 273 a~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 273 QNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp TTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99876 3 589999999754 555 57899999999999999999998875
No 258
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.27 E-value=1.1e-11 Score=130.13 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....++.++++++++|+.+++.
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~- 91 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL- 91 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-
Confidence 356678889999999999999999999999999998 789999999999999999998766665689999999988763
Q ss_pred CCccEEEEchhhhhhChhhHHHHH--------------HHH--HhccccCcEEE
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFF--------------GCC--ESLLAEHGLLL 732 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l--------------~~~--~~~LkpgG~l~ 732 (864)
.+||+|+++..++... +-...++ +++ +++|||||.++
T Consensus 92 ~~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 PFFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 3799999975544331 1111222 222 46899999864
No 259
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.27 E-value=9.5e-12 Score=130.43 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=85.2
Q ss_pred CeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEchhh
Q 002928 631 HEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KSNKYDRIISCEMI 706 (864)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~v~s~~~~ 706 (864)
.+|||||||+|.++..+++. ++.+|++||+++++++.|++++.... ..+++++++|+.++. .+++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999995 78899999999999999999875322 358999999987653 35789999986432
Q ss_pred hhhChhh--HHHHHHHHHhccccCcEEEEEEec
Q 002928 707 EAVGHDY--MEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 707 ~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
....... ..+++++++++|||||+++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2211111 278999999999999999997754
No 260
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.27 E-value=3.6e-11 Score=134.89 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=97.5
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KS 694 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (864)
.+...+.++++.+|||+|||+|..+..+++. .+ ++|+++|+|+.+++.++++++..|++ +++++++|+.+++ ++
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhcc
Confidence 4455667889999999999999999999997 34 79999999999999999999999885 7999999998876 23
Q ss_pred CCccEEEE------chhhhhhChh-------h-------HHHHHHHHHhccccCcEEEEEEecCC
Q 002928 695 NKYDRIIS------CEMIEAVGHD-------Y-------MEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 695 ~~fD~v~s------~~~~~~~~~~-------~-------~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
++||+|++ .+++.+.++. + ...+++++.++|||||++++.+++..
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 68999997 3344443321 1 16789999999999999999876643
No 261
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.27 E-value=3.9e-13 Score=136.46 Aligned_cols=152 Identities=12% Similarity=0.176 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCC-CCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcccCCCC
Q 002928 616 RKVSLLIQKARVS-KGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLY-LCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~-~~d~~~~~ 692 (864)
.+++.+++.+.+. ++.+|||||||+|.++..+++. + .+|+|+|+|++|++.|+++.. ++... ..++..+.
T Consensus 23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~ 95 (232)
T 3opn_A 23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAV 95 (232)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCC
T ss_pred HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeC
Confidence 4567778888764 4679999999999999999998 6 499999999999999876532 22221 11222221
Q ss_pred ----CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEecCCCcccccccCccchhhh-ccc--CCCCCCC
Q 002928 693 ----KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDEHRLSPGFIKE-YIF--PGGCLPS 765 (864)
Q Consensus 693 ----~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~i~--p~~~~~~ 765 (864)
....||.+.+..++.++ ..++++++++|||||++++.. .+. +.. ....+.+ -++ |..+..+
T Consensus 96 ~~~~~~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~--~e~---~~~~~~~~G~~~d~~~~~~~ 163 (232)
T 3opn_A 96 LADFEQGRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ--FEA---GREQVGKNGIIRDPKVHQMT 163 (232)
T ss_dssp GGGCCSCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH--HHS---CHHHHC-CCCCCCHHHHHHH
T ss_pred HhHcCcCCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc--ccc---CHHHhCcCCeecCcchhHHH
Confidence 11135666555555444 679999999999999999843 111 110 0000100 000 0011125
Q ss_pred HHHHHHHHhcCCCcEEEEEEec
Q 002928 766 LNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 766 ~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
.+++.+.+.+ +||++..++..
T Consensus 164 ~~~l~~~l~~-aGf~v~~~~~~ 184 (232)
T 3opn_A 164 IEKVLKTATQ-LGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHH-HTEEEEEEEEC
T ss_pred HHHHHHHHHH-CCCEEEEEEEc
Confidence 6777777776 89999887653
No 262
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.27 E-value=2.6e-11 Score=134.57 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=54.9
Q ss_pred EecCChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 209 TVRSRSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 209 ~~~gG~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
++......+.+.|.+.+++.|++|+++++|++|+.+++++.|.+.+| +++||.||+|+....
T Consensus 126 ~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS 187 (417)
T ss_dssp EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence 44555678999999999999999999999999999989999999888 899999999987654
No 263
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.26 E-value=7.4e-12 Score=121.91 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=88.4
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 617 KVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 617 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
++..+++.+. ++++.+|||+|||+|.++..+++. ++.+|+|+|+|+ +++. .+++++++|+.+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchh
Confidence 4456666665 678899999999999999999987 358999999999 6532 37999999998753
Q ss_pred --------CCCCccEEEEchhhhhhChhh---------HHHHHHHHHhccccCcEEEEEEecC
Q 002928 693 --------KSNKYDRIISCEMIEAVGHDY---------MEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 693 --------~~~~fD~v~s~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
++++||+|++..++++.+... ...+++++.++|||||.+++..+..
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 347899999988877664321 1688999999999999999976543
No 264
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.26 E-value=4.9e-11 Score=130.50 Aligned_cols=153 Identities=24% Similarity=0.236 Sum_probs=109.0
Q ss_pred HhhhhhhcCChHHHHhhcCCC---CcccccccC-CCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh
Q 002928 575 RNISRHYDLSNELFSLFLDKS---MLYSCAIFK-SEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ 650 (864)
Q Consensus 575 ~~i~~~Yd~~~~~~~~~~~~~---~~ys~~~~~-~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (864)
..+.-++++.++.+.+.++.+ ..+..+|.. .....+.+ .....++... .+++.+|||+|||+|.+++.++..
T Consensus 163 p~~~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~---~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~ 238 (373)
T 3tm4_A 163 PAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKA---SIANAMIELA-ELDGGSVLDPMCGSGTILIELALR 238 (373)
T ss_dssp CSEEEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCH---HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT
T ss_pred CCeEEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccH---HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh
Confidence 345556777777777776643 223334321 11222333 2334455555 788999999999999999999997
Q ss_pred -cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchhhhhhC------hhhHHHHHHHHH
Q 002928 651 -TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEMIEAVG------HDYMEEFFGCCE 722 (864)
Q Consensus 651 -~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~~~~~~------~~~~~~~l~~~~ 722 (864)
..++|+|+|+|+.+++.|+++++..|+.+++++.++|+.+++ ++++||+|+++..+.... .+-+..+++++.
T Consensus 239 ~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~ 318 (373)
T 3tm4_A 239 RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELA 318 (373)
T ss_dssp TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHH
Confidence 223999999999999999999999999779999999999988 568999999976533210 012477889999
Q ss_pred hccccCcEEEE
Q 002928 723 SLLAEHGLLLL 733 (864)
Q Consensus 723 ~~LkpgG~l~i 733 (864)
++| +|.+++
T Consensus 319 r~l--~g~~~~ 327 (373)
T 3tm4_A 319 KVL--EKRGVF 327 (373)
T ss_dssp HHE--EEEEEE
T ss_pred HHc--CCeEEE
Confidence 988 444444
No 265
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.25 E-value=1.7e-11 Score=120.66 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=84.2
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
-|+..+.++.. ++++.+|||+|||+|.++..++++ +++|+|+|+++.. .+ .+++++++|+.+.+ .
T Consensus 11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHH
Confidence 45667777776 578999999999999999999998 8999999999741 22 37999999998865 1
Q ss_pred -----------CCCccEEEEchhhhhhC---------hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 -----------SNKYDRIISCEMIEAVG---------HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 -----------~~~fD~v~s~~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.++||+|+|.......+ .+....+++.+.++|||||.|++..+.
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 14899999964321111 123467899999999999999986653
No 266
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.25 E-value=1.4e-11 Score=130.34 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCC-C-CCCCccEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDHIRLYLCDYRQL-P-KSNKYDRI 700 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~-~-~~~~fD~v 700 (864)
..++.+|||||||+|.++..+++. +..+|+++|+|+++++.|++++.. .++ .++++++.+|+.+. + .+++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 456689999999999999999987 457999999999999999998765 344 45899999998763 2 45789999
Q ss_pred EEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEEec
Q 002928 701 ISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++.......+.. ....+++++.++|||||+++++...
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 996543221111 2367899999999999999997643
No 267
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.25 E-value=3e-11 Score=132.60 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCC-C----CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQD-HIRLYLCDYRQL-P----KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~-~----~~~~fD~v 700 (864)
.++.+|||+|||+|.+++.+|+. ++ +|+|+|+|+.+++.|+++++.+++.+ +++++++|+.+. + ...+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 57889999999999999999986 54 89999999999999999999999876 899999998763 2 24589999
Q ss_pred EEchhhh-----hhC--hhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 701 ISCEMIE-----AVG--HDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 701 ~s~~~~~-----~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++..... +.. .+.+..+++.+.++|+|||.+++.+.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9854331 111 13566788999999999999998764
No 268
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.24 E-value=2.4e-11 Score=134.62 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=95.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
.+...+.++++.+|||+|||+|+.+.++|+. . .++|+++|+|+.+++.++++++..|+. |+++++|+.+++ .++
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~ 169 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGT 169 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCS
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccc
Confidence 3445567889999999999999999999987 2 379999999999999999999999985 999999988775 357
Q ss_pred CccEEEEc------hhhhhhCh--------------hhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 696 KYDRIISC------EMIEAVGH--------------DYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 696 ~fD~v~s~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+||+|++. +++.+-++ +....+++++.++|||||+++..+++..
T Consensus 170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 89999962 23332221 1237789999999999999999876643
No 269
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.24 E-value=2.2e-10 Score=125.43 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCC--CCCccEEEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ-LPK--SNKYDRIIS 702 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~--~~~fD~v~s 702 (864)
..++.+|||+| |+|.++..+++. ++.+|+++|+|+++++.|+++++..|+. +|+++++|+.+ ++. +++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34688999999 999999999987 3479999999999999999999999986 89999999988 662 468999999
Q ss_pred chhhhhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 703 CEMIEAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
+..+.+. ....+++++.++|||||++++
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~ 275 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGY 275 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEE
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEE
Confidence 8766544 258899999999999996544
No 270
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.23 E-value=1.8e-11 Score=135.47 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=96.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
.+...+.++++.+|||+|||+|+.+.++|+. . .++|+++|+|+.+++.++++++..|+. +|.++++|+.+++ .++
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccc
Confidence 4445567889999999999999999999987 3 479999999999999999999999986 7999999988765 357
Q ss_pred CccEEEEch------hhhhhCh--------------hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 696 KYDRIISCE------MIEAVGH--------------DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 696 ~fD~v~s~~------~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
+||+|++.- ++.+-++ .....+++++.++|||||+++.++++...
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 899999843 2222110 12247899999999999999998876543
No 271
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.23 E-value=2.4e-11 Score=132.88 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEM 705 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~ 705 (864)
++|.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|+++++.+++.. ++.++|+.+.. ..+.||+|++...
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence 56899999999999999999997 8889999999999999999999999853 56699987653 2345999998654
Q ss_pred hhhhC-------hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 706 IEAVG-------HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 706 ~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
..+-. .+++..+++.+.++|||||.+++.+.+
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 21100 145678999999999999999976654
No 272
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.23 E-value=1.7e-11 Score=131.07 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=86.8
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCC-C--CCCCcc
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDHIRLYLCDYRQL-P--KSNKYD 698 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~-~--~~~~fD 698 (864)
..+++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++... ++ ..+++++++|+.+. + ++++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456789999999999999999987 4679999999999999999987652 34 34899999998764 2 357899
Q ss_pred EEEEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEE
Q 002928 699 RIISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 699 ~v~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+|++...-..-+.+ ....+++++.++|||||.++++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99996431111111 14789999999999999999963
No 273
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.23 E-value=3.2e-11 Score=135.24 Aligned_cols=117 Identities=13% Similarity=0.174 Sum_probs=95.7
Q ss_pred HHHcCCC--CCCeEEEEcCCchHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 002928 622 IQKARVS--KGHEVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 622 ~~~l~~~--~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
...+.+. ++.+|||+|||+|+.+.++|+.. +++|+++|+|+.+++.++++++..|+. +++++++|+.+++ .++
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTT
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccc
Confidence 3455666 99999999999999999999972 479999999999999999999999986 7999999998875 457
Q ss_pred CccEEEEc------hhhhhhCh--------------hhHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 696 KYDRIISC------EMIEAVGH--------------DYMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 696 ~fD~v~s~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
+||+|++. +++.+.++ +....+++++.++|||||++++.+++..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 89999983 33433221 1135789999999999999999887653
No 274
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.23 E-value=1.5e-10 Score=114.32 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
.+..+|||||||.|.++..+. ++.+|+|+|+|+.+++.+++++...+. +.++.++|....++.++||+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567799999999999999887 588999999999999999999888774 7899999998877667999999999999
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
|+.++.....+ ++.+.|+++|.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98555555556 8888999998777643
No 275
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.22 E-value=4.1e-11 Score=119.32 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchh
Q 002928 626 RVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEM 705 (864)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~ 705 (864)
...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. +++++++|+.+++ ++||+|+++..
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCC
Confidence 556788999999999999999998733479999999999999998764 6899999999886 78999999999
Q ss_pred hhhhChhhHHHHHHHHHhcc
Q 002928 706 IEAVGHDYMEEFFGCCESLL 725 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~L 725 (864)
++|........+++++.++|
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp C-------CHHHHHHHHHHE
T ss_pred chhccCchhHHHHHHHHHhc
Confidence 99985433457889999988
No 276
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.22 E-value=2e-12 Score=134.41 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEE--EcccCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKV-KEAGLQDHIRLY--LCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~-~~~~l~~~v~~~--~~d~~~~~ 692 (864)
.++..++++..++++.+|||||||+|.++..++++ .+|+|||+|+ |+..++++. .......+++++ ++|+.+++
T Consensus 69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 34566666655788999999999999999999987 6999999998 543332210 001111268999 99999987
Q ss_pred CCCCccEEEEchhhhhhChhh---H--HHHHHHHHhccccCc--EEEEEEec
Q 002928 693 KSNKYDRIISCEMIEAVGHDY---M--EEFFGCCESLLAEHG--LLLLQFIS 737 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~---~--~~~l~~~~~~LkpgG--~l~i~~~~ 737 (864)
+++||+|+|..+ ++.+... . ..+++++.++||||| .+++..+.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 4432211 1 137899999999999 99986654
No 277
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.21 E-value=2.3e-12 Score=133.30 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEE--EcccCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKV-KEAGLQDHIRLY--LCDYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~-~~~~l~~~v~~~--~~d~~~~~ 692 (864)
.++..++++..++++.+|||||||+|.++..+++. .+|+|||+|+ |+..+++.. .......++.++ ++|+.+++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 44566667756788999999999999999999987 6999999998 533322110 000111168999 99999987
Q ss_pred CCCCccEEEEchhhhhhChhh---H--HHHHHHHHhccccCc--EEEEEEec
Q 002928 693 KSNKYDRIISCEMIEAVGHDY---M--EEFFGCCESLLAEHG--LLLLQFIS 737 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~---~--~~~l~~~~~~LkpgG--~l~i~~~~ 737 (864)
+++||+|+|..+ ++.+... . ..+++++.++||||| .+++..+.
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 578999999876 4433211 1 137899999999999 99986654
No 278
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.21 E-value=9.2e-12 Score=132.05 Aligned_cols=107 Identities=24% Similarity=0.334 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDHIRLYLCDYRQL-P-KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~-~-~~~~fD~v~ 701 (864)
+++.+|||||||+|..+..+++. +..+|+++|+|+++++.|++++... ++ .++++++.+|+.+. + .+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45679999999999999999987 4689999999999999999987643 33 45899999998763 3 457899999
Q ss_pred EchhhhhhCh-hhH--HHHHHHHHhccccCcEEEEEE
Q 002928 702 SCEMIEAVGH-DYM--EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 702 s~~~~~~~~~-~~~--~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+... .+++. +.+ ..+++++.++|||||+++++.
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8653 33321 222 789999999999999999965
No 279
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.21 E-value=3e-11 Score=128.76 Aligned_cols=109 Identities=22% Similarity=0.244 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCCeEEEEcccCCC-C-CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE--AG-L-QDHIRLYLCDYRQL-P-KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~-l-~~~v~~~~~d~~~~-~-~~~~fD~v 700 (864)
+++.+|||||||+|..+..+++. +..+|+++|+|+++++.|++++.. .+ + .++++++++|+.+. + .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999987 467999999999999999998764 22 2 35899999998774 3 45789999
Q ss_pred EEchhhhh---hChhh--HHHHHHHHHhccccCcEEEEEEe
Q 002928 701 ISCEMIEA---VGHDY--MEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 701 ~s~~~~~~---~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++....++ -+... ...++++++++|||||+++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99765433 11111 37899999999999999999753
No 280
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.20 E-value=7e-11 Score=131.89 Aligned_cols=119 Identities=17% Similarity=0.181 Sum_probs=97.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 002928 619 SLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---KS 694 (864)
Q Consensus 619 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (864)
..+...+.++++.+|||+|||+|..+.++++. ++++|+++|+|+.+++.++++++..|+ +++++++|+.+++ ++
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTT
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhccc
Confidence 35556677889999999999999999999998 447999999999999999999999887 5899999998875 34
Q ss_pred CCccEEEEc------hhhhhhChh--------------hHHHHHHHHHhccccCcEEEEEEecCC
Q 002928 695 NKYDRIISC------EMIEAVGHD--------------YMEEFFGCCESLLAEHGLLLLQFISVP 739 (864)
Q Consensus 695 ~~fD~v~s~------~~~~~~~~~--------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 739 (864)
++||+|++. +++.+.++. ....+++++.++|||||++++.+++..
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 689999973 344443321 125889999999999999999876643
No 281
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.20 E-value=2.9e-11 Score=126.90 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEE
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAG--L-QDHIRLYLCDYRQLP--KSNKYDRI 700 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~v 700 (864)
.+++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...+ + .++++++++|+.+.. .+++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 456689999999999999999987 46799999999999999999875431 1 358999999987643 35789999
Q ss_pred EEchhhhhhChhhH--HHHHHHHHhccccCcEEEEEE
Q 002928 701 ISCEMIEAVGHDYM--EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 701 ~s~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 735 (864)
++.....+.+.+.+ ..++++++++|||||.++++.
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99654322222223 799999999999999999964
No 282
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.20 E-value=1.3e-11 Score=131.65 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDHIRLYLCDYRQL-P-KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~-~-~~~~fD~v~ 701 (864)
+++.+|||||||+|.++..+++. ++.+|+++|+|+++++.|++++.. .++ .++++++++|+.+. + .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999987 568999999999999999998764 223 35899999998764 2 457899999
Q ss_pred EchhhhhhCh-hhH--HHHHHHHHhccccCcEEEEEE
Q 002928 702 SCEMIEAVGH-DYM--EEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 702 s~~~~~~~~~-~~~--~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+... .+++. +.. ..+++++.++|||||.++++.
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8652 22211 222 789999999999999999965
No 283
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.19 E-value=1.4e-11 Score=129.33 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCCeEEEEcccCCCC-CCCC
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA--GL--------QDHIRLYLCDYRQLP-KSNK 696 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l--------~~~v~~~~~d~~~~~-~~~~ 696 (864)
.++.+|||||||+|.++..+++.+..+|+++|+|+++++.|++++ .. ++ .++++++.+|+.+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 456899999999999999999884569999999999999999987 33 32 458999999976532 2478
Q ss_pred ccEEEEchhhhhhChhh--HHHHHHHHHhccccCcEEEEEEe
Q 002928 697 YDRIISCEMIEAVGHDY--MEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
||+|++......-+.+. ...+++++.++|||||.++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99999875432111122 27899999999999999999753
No 284
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.18 E-value=4.6e-11 Score=132.17 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-----KSNKYDRIIS 702 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~v~s 702 (864)
+++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.++++++++|+.+.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 47899999999999999999987234999999999999999999999998768999999987753 2578999999
Q ss_pred chh---------hhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 703 CEM---------IEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 703 ~~~---------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
... .++. +....++.++.++|+|||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 642 2333 56788999999999999999987654
No 285
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.18 E-value=4.8e-11 Score=131.90 Aligned_cols=110 Identities=20% Similarity=0.129 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcccCCCC-----CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGL-QDHIRLYLCDYRQLP-----KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l-~~~v~~~~~d~~~~~-----~~~~fD~v~ 701 (864)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++ .++++++++|+.+.. ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 57889999999999999999997335999999999999999999999998 668999999987753 146899999
Q ss_pred Echhhhhh-------ChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 702 SCEMIEAV-------GHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 702 s~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+....... ..+.+..++.++.++|+|||.+++.+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 97533111 0146788999999999999999996643
No 286
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.17 E-value=5.3e-11 Score=125.67 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDHIRLYLCDYRQL-P-KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~-~-~~~~fD~v~ 701 (864)
..+.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++.. .++ .++++++++|+.+. + .+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35589999999999999999987 468999999999999999998754 233 35899999998663 3 457899999
Q ss_pred EchhhhhhChh---hHHHHHHHHHhccccCcEEEEEE
Q 002928 702 SCEMIEAVGHD---YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 702 s~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+...-.+++.. ....+++++.++|||||.++++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 85432212111 23789999999999999999964
No 287
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.17 E-value=7.1e-11 Score=138.95 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCC-C-CCCCccEEEEchh
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLCDYRQL-P-KSNKYDRIISCEM 705 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~-~-~~~~fD~v~s~~~ 705 (864)
+|.+|||+|||+|.+++.+++....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+. + ..++||+|++...
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 68899999999999999999862346999999999999999999999987 6899999998774 3 4578999999653
Q ss_pred -----------hhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 706 -----------IEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 706 -----------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+.+. +++..+++++.++|||||.+++.+.
T Consensus 619 ~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp SBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2333 5788899999999999999998654
No 288
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.17 E-value=4.9e-11 Score=124.54 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDHIRLYLCDYRQL-P-KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~-~-~~~~fD~v~ 701 (864)
..+.+|||||||+|.++..+++. +..+|+++|+++++++.|++++... ++ .++++++.+|+.+. + .+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35679999999999999999987 4579999999999999999987542 33 35899999998763 2 357899999
Q ss_pred EchhhhhhChh--hHHHHHHHHHhccccCcEEEEEE
Q 002928 702 SCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 702 s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
+.......+.. ....+++++.++|||||.++++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 96543221111 12689999999999999999964
No 289
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.16 E-value=2.7e-11 Score=134.60 Aligned_cols=56 Identities=9% Similarity=-0.016 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEE---CCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIR---GDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~---~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++|+.+++++. |++ .++.+++||.||.|.....
T Consensus 103 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 5667788888878999999999999999888876 766 3455899999999986554
No 290
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.16 E-value=5.6e-11 Score=130.61 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=90.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEc
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-----KSNKYDRIISC 703 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~v~s~ 703 (864)
++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+.. .+++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999998 789999999999999999999999986 4999999987753 25789999995
Q ss_pred hh---------hhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 704 EM---------IEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 704 ~~---------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.. ..+. +....++.++.++|+|||.+++.+..
T Consensus 287 pP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 42 2222 46788999999999999999997654
No 291
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.14 E-value=1.2e-10 Score=123.17 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (864)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++++++|+.+++.
T Consensus 28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~- 104 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF- 104 (299)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-
Confidence 345678888888889999999999999999999997 78999999999999999999887776 489999999988864
Q ss_pred CCccEEEEchhhhhhChhhHHHHH---------------HHHHhccccCcE
Q 002928 695 NKYDRIISCEMIEAVGHDYMEEFF---------------GCCESLLAEHGL 730 (864)
Q Consensus 695 ~~fD~v~s~~~~~~~~~~~~~~~l---------------~~~~~~LkpgG~ 730 (864)
.+||+|+++...+.. .+....++ +.+.|+++|+|.
T Consensus 105 ~~~D~Vv~n~py~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 105 PKFDVCTANIPYKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CCCSEEEEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred ccCCEEEEcCCcccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 489999997665433 22233333 346677777663
No 292
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.14 E-value=1.2e-10 Score=125.52 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE 707 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~ 707 (864)
.++.+|||+|||+|.++.. ++ .+.+|+|+|+|+.+++.|+++++.+++.++++++++|+.+.. ++||+|++.....
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 5789999999999999999 88 478999999999999999999999998779999999998886 7899999964321
Q ss_pred hhChhhHHHHHHHHHhccccCcEEEEEEecC
Q 002928 708 AVGHDYMEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 708 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
...+++++.++|+|||.+++.++..
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 2378899999999999999977654
No 293
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.13 E-value=2.1e-10 Score=124.40 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHc-CCCCCCeEEEEcCCchHHHHHHHHh-cC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 002928 619 SLLIQKA-RVSKGHEVLEIGCGWGTLAIEIVKQ-TG-----CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691 (864)
Q Consensus 619 ~~~~~~l-~~~~~~~vLDiGcG~G~~~~~la~~-~~-----~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (864)
..++..+ ...++.+|||+|||+|.++..+++. +. .+|+|+|+++.+++.|+.++...++ +++++++|..+.
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~ 196 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN 196 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc
Confidence 4455544 4557789999999999999999887 32 7899999999999999999888887 689999998765
Q ss_pred CCCCCccEEEEchhhhhhChhhH----------------HHHHHHHHhccccCcEEEEEEe
Q 002928 692 PKSNKYDRIISCEMIEAVGHDYM----------------EEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 692 ~~~~~fD~v~s~~~~~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
...++||+|+++..+.+++.++. ..+++++.+.|||||++++...
T Consensus 197 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 197 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 45578999999988766643221 2589999999999999988653
No 294
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.12 E-value=4.2e-10 Score=126.72 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccChHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
....+.+.|.+.+++.|++|+++++|++|..++++ +.|++.+|++++||.||+|+....
T Consensus 132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 34688899999999999999999999999988887 788888887799999999987654
No 295
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=115.70 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=80.4
Q ss_pred HHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHhcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-E
Q 002928 618 VSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQTG----------CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLY-L 685 (864)
Q Consensus 618 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~-~ 685 (864)
+..+.+... ++++.+|||||||+|.++..+++..+ .+|+|+|+|+.+ .+ .+++++ .
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~ 77 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCP 77 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECS
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEe
Confidence 344555554 57899999999999999999999833 799999999832 12 378899 8
Q ss_pred cccCCCC---------CCCCccEEEEchhhhhhCh--hhH-------HHHHHHHHhccccCcEEEEEEec
Q 002928 686 CDYRQLP---------KSNKYDRIISCEMIEAVGH--DYM-------EEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 686 ~d~~~~~---------~~~~fD~v~s~~~~~~~~~--~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+|+.+.+ ++++||+|++..+++..+. .+. ..+++++.++|||||++++.++.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9977642 2358999999764433211 111 57899999999999999997653
No 296
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=99.10 E-value=5.9e-10 Score=116.41 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++++++.+++++... ++++++++|+.+++ +
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcc
Confidence 356678999999999999999999999999999998 889999999999999999998732 38999999999887 5
Q ss_pred CCCccEEEEchhhhh
Q 002928 694 SNKYDRIISCEMIEA 708 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~ 708 (864)
+.+||+|+++..++.
T Consensus 112 ~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 112 KLDFNKVVANLPYQI 126 (295)
T ss_dssp GSCCSEEEEECCGGG
T ss_pred cCCccEEEEeCcccc
Confidence 567999998866543
No 297
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=99.10 E-value=4.2e-10 Score=123.14 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cC--------------------------------------CEEE
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TG--------------------------------------CKYT 656 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~ 656 (864)
.....++......++.+|||.+||+|.+++.+|.. .+ .+|+
T Consensus 188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 44557788888889999999999999999999875 22 4699
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh-hhCh-hhHHHHHHHHHhcccc--CcEEE
Q 002928 657 GITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE-AVGH-DYMEEFFGCCESLLAE--HGLLL 732 (864)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~-~~~~-~~~~~~l~~~~~~Lkp--gG~l~ 732 (864)
|+|+|+.+++.|++++..+|+.++|+++++|+.+++...+||+|+++..+. .+++ +....+++++.+.||+ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999888999999999988556999999996542 2222 3566777778777776 99988
Q ss_pred EEE
Q 002928 733 LQF 735 (864)
Q Consensus 733 i~~ 735 (864)
+.+
T Consensus 348 iit 350 (393)
T 3k0b_A 348 VLT 350 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 298
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=99.09 E-value=8.9e-10 Score=119.86 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cC--------------------------------------CEEE
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TG--------------------------------------CKYT 656 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~ 656 (864)
.....++.....+++..|||.+||+|.+++.+|.. .+ .+|+
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 34456778888889999999999999999999875 22 4699
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh-hhC-hhhHHHHHHHHHhcccc--CcEEE
Q 002928 657 GITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE-AVG-HDYMEEFFGCCESLLAE--HGLLL 732 (864)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~-~~~-~~~~~~~l~~~~~~Lkp--gG~l~ 732 (864)
|+|+|+.+++.|+++++.+|+.+++++.++|+.+++...+||+|+++-.+. -++ .++...+++++.+.||+ ||.++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 999999999999999999999888999999999998556999999996543 233 24677788888888887 99988
Q ss_pred EEE
Q 002928 733 LQF 735 (864)
Q Consensus 733 i~~ 735 (864)
+.+
T Consensus 341 iit 343 (384)
T 3ldg_A 341 ILT 343 (384)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 299
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=99.09 E-value=6.6e-10 Score=122.85 Aligned_cols=107 Identities=15% Similarity=0.226 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNK 696 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (864)
.++.+++ +.++.+|||+|||+|.++..+|+. +.+|+|+|+|+++++.|+++++.+++. ++++++|+.++.+. +
T Consensus 281 l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~ 353 (425)
T 2jjq_A 281 LVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-G 353 (425)
T ss_dssp HHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-T
T ss_pred HHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-C
Confidence 3444444 567889999999999999999997 789999999999999999999988884 99999999988643 8
Q ss_pred ccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 697 YDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 697 fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
||+|++...-... ...+++.+. .|+|+|.+++++
T Consensus 354 fD~Vv~dPPr~g~----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 354 FDTVIVDPPRAGL----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CSEEEECCCTTCS----CHHHHHHHH-HHCCSEEEEEES
T ss_pred CCEEEEcCCccch----HHHHHHHHH-hcCCCcEEEEEC
Confidence 9999997553322 134555554 489999999853
No 300
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=99.08 E-value=3.9e-10 Score=123.25 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cC--------------------------------------CEEE
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TG--------------------------------------CKYT 656 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~ 656 (864)
.....++...+..++.+|||++||+|.+++.+|.. .+ .+|+
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 34456777888889999999999999999999876 21 5799
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhh-hhC-hhhHHHHHHHHHhcccc--CcEEE
Q 002928 657 GITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIE-AVG-HDYMEEFFGCCESLLAE--HGLLL 732 (864)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~-~~~-~~~~~~~l~~~~~~Lkp--gG~l~ 732 (864)
|+|+|+.+++.|++++..+|+.++|++.++|+.+++.+++||+|+++..+. .++ .++...+++++.+.||+ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 999999999999999999999888999999999988657999999987652 232 24567788888888887 88888
Q ss_pred EEE
Q 002928 733 LQF 735 (864)
Q Consensus 733 i~~ 735 (864)
+.+
T Consensus 342 iit 344 (385)
T 3ldu_A 342 LIT 344 (385)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 301
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=99.08 E-value=2.2e-11 Score=135.54 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceE---------EEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVR---------SVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~---------~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+++++|+ +|+.++++|.|.+.+| +++||.||+|+....
T Consensus 172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence 4789999999999999999999999 9987777888878777 899999999998764
No 302
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=99.07 E-value=7.4e-10 Score=123.57 Aligned_cols=112 Identities=15% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL--- 691 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--- 691 (864)
...++.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++.+++. +++++++|+.+.
T Consensus 272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTK 349 (433)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSS
T ss_pred HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhh
Confidence 456678888888888899999999999999999998 889999999999999999999998886 899999999873
Q ss_pred -C-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 692 -P-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 692 -~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+ .+++||+|++....... ..+++.+.+ ++|++.++++
T Consensus 350 ~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 350 QPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhcCCCCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence 2 34689999997543322 244555543 7899888874
No 303
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.07 E-value=4.9e-11 Score=126.04 Aligned_cols=115 Identities=13% Similarity=0.186 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCC
Q 002928 617 KVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITL----SEEQLKYAEMKVKEAGLQDHIRLYLC-DYRQL 691 (864)
Q Consensus 617 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~----s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~ 691 (864)
++..++++..++++.+|||||||+|.++..++++ .+|+|||+ ++.+++.+. .+..+. ++|+++++ |+.++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l 144 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI 144 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC
Confidence 3455666644678999999999999999999987 58999999 565442211 111111 37999999 98887
Q ss_pred CCCCCccEEEEchhhh---hhChh-hHHHHHHHHHhccccCcEEEEEEec
Q 002928 692 PKSNKYDRIISCEMIE---AVGHD-YMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 692 ~~~~~fD~v~s~~~~~---~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+ .++||+|+|..++. +..+. ....+++.+.++|||||.|++..+.
T Consensus 145 ~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 145 P-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp C-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred C-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 6 46899999976642 22111 1125789999999999999986543
No 304
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=99.07 E-value=7.3e-10 Score=115.17 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=73.1
Q ss_pred cCCCCCCeEEEEcC------CchHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcccCCCCCCC
Q 002928 625 ARVSKGHEVLEIGC------GWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRL-YLCDYRQLPKSN 695 (864)
Q Consensus 625 l~~~~~~~vLDiGc------G~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~-~~~d~~~~~~~~ 695 (864)
+.++++.+|||+|| |+|. ..+++. + +++|+|+|+|+. + .++++ +++|+.+++..+
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~~ 122 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTAN 122 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCSS
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCccC
Confidence 46789999999999 5577 445555 3 589999999997 1 26889 999999887557
Q ss_pred CccEEEEchhhhhh---------ChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 696 KYDRIISCEMIEAV---------GHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 696 ~fD~v~s~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+||+|+|+...+.. ..+....+++++.++|||||.+++..+
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 89999997432211 012356899999999999999999654
No 305
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.06 E-value=1.7e-10 Score=119.17 Aligned_cols=98 Identities=15% Similarity=-0.003 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCCCCCCCccEEEEch
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKE--AGL-QDHIRLYLCDYRQLPKSNKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~~~~~~fD~v~s~~ 704 (864)
+.+.+|||||||+|..+..+++. +.+|+++|+++++++.|++++.. .++ .++++++.+|..+.. ++||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 45679999999999999999988 58999999999999999886532 111 348999999998876 7899999872
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.++..+++++.++|||||.++++.
T Consensus 148 -------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 123459999999999999999964
No 306
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.05 E-value=1.8e-09 Score=120.21 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+.+ ++|+++++|++|+.++++|+|++.+|++++||.||.|....
T Consensus 128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 180 (407)
T 3rp8_A 128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSH 180 (407)
T ss_dssp HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence 566777887765 89999999999999999999999999899999999997654
No 307
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=99.05 E-value=2.7e-10 Score=127.79 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--------------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--------------TGCKYTGITLSEEQLKYAEMKVKEAGLQD-H 680 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------------~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~ 680 (864)
..++.|++.+...++.+|||.|||+|.++..+++. .+.+++|+|+++.+++.|+.++...|+.. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 45567777778888999999999999999998875 24689999999999999999988888753 6
Q ss_pred eEEEEcccCCCCCCCCccEEEEchhhhhhChhh---------------HHHHHHHHHhccccCcEEEEEEe
Q 002928 681 IRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDY---------------MEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 681 v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~---------------~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+++.++|....+..++||+|+++..+.+..... ...+++++.++|||||++++...
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 789999988777446899999998776542211 24789999999999999988654
No 308
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.05 E-value=2.1e-09 Score=118.81 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEe----CCeEEEEECCCcEEecCEEEEccChHH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQY----GEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~----~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
....+.+.|.+.+++.|++|+++++|++|..+ ++++.|++.+| +++||.||+|+....
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLS 168 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence 44678888999998899999999999999887 66788988877 899999999987653
No 309
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=99.04 E-value=3.6e-10 Score=115.80 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+|+++++.++++.... ++++++++|+.+++ +
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc
Confidence 456678888888889999999999999999999998 789999999999999999887532 48999999999987 3
Q ss_pred -CCCccEEEEch
Q 002928 694 -SNKYDRIISCE 704 (864)
Q Consensus 694 -~~~fD~v~s~~ 704 (864)
...| .|+++.
T Consensus 92 ~~~~~-~vv~nl 102 (244)
T 1qam_A 92 KNQSY-KIFGNI 102 (244)
T ss_dssp SSCCC-EEEEEC
T ss_pred cCCCe-EEEEeC
Confidence 2456 466653
No 310
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.01 E-value=4.2e-10 Score=124.68 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=34.3
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||||++||+||+.|+++|++|+|||+++.+|.
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 899999999999999999999999999999888765
No 311
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=99.01 E-value=3.6e-12 Score=139.20 Aligned_cols=182 Identities=12% Similarity=-0.021 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHHHHHhhcCCCChHHHHhhccCcee
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPDALRMLGNQATFEEKRVLGAFQYV 294 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (864)
..+++.|.+.++++|++|+. ++|++|+..+ .++||.||+|+..+.. .+++. ++..+..
T Consensus 142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~-~l~~~---------~~l~p~r 199 (351)
T 3g3e_A 142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAG-ALQRD---------PLLQPGR 199 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGG-GTSCC---------TTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChH-hhcCC---------CceeecC
Confidence 58999999999999999999 9998875321 2679999999987743 23331 1111111
Q ss_pred eceEEEecCC---CCCCCCcCCc-ccceeccCCCCceEEEEec--cccc-c----CccCCCCeEEEcCCCCCCcceeeeE
Q 002928 295 YSDIFLHRDK---NFMPRNPAAW-SAWNFLGSTGGKVCLTYWL--NVVQ-N----IEETRLPFLVTLNPDHTPEHTLFKW 363 (864)
Q Consensus 295 ~~~~~l~~d~---~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~----l~~~~~~~~~~l~p~~~~~~~~~~w 363 (864)
...+.+.... .++....... +...|.....++.++.... .... . ..+.+.+.+.+++|.+....+...|
T Consensus 200 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~iGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w 279 (351)
T 3g3e_A 200 GQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGER 279 (351)
T ss_dssp EEEEEEECTTCCSEEEECCTTTCTTCSCEEEECSSCEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGCEEEEEE
T ss_pred CcEEEEeCCCcceEEEeccccCCCCceeEEEeCCCcEEEeeeeecCCCCCCCCHHHHHHHHHHHHHhCCCccCCcEeeee
Confidence 1111111110 0000000000 0122332112233332111 0000 0 0001122234466665555677788
Q ss_pred EcCCCCCCHHHHHHHHhhhhhcCCCCeEEEeccCCCCCChhhHhHHHHHHHHhcccc
Q 002928 364 STSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMIAAHGMLGKS 420 (864)
Q Consensus 364 ~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~a~~sG~~aA~~ilg~~ 420 (864)
....|.... ..-..+.+......+|+|++.+|+|+|+ ..|...|+.+|+.|.+..
T Consensus 280 ~G~r~~t~D-~p~~~~~ig~~~~~~~~~~~~G~~g~G~-~~ap~~g~~la~li~~~~ 334 (351)
T 3g3e_A 280 TGFRPVRPQ-IRLEREQLRTGPSNTEVIHNYGHGGYGL-TIHWGCALEAAKLFGRIL 334 (351)
T ss_dssp EEEEEECSS-CEEEEEEECCSSSCEEEEEEECCTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCC-ccceeeeccCCCCCCeEEEEeCCCcchH-hhhHHHHHHHHHHHHHHH
Confidence 765553221 0000000111223579999999999999 999999999999998754
No 312
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.00 E-value=5.6e-09 Score=115.76 Aligned_cols=54 Identities=17% Similarity=-0.045 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+. |++|+++++|++|+.++++|+|++.+|++++||.||.|.....
T Consensus 100 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 100 SIYGGLYELFG--PERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp HHHHHHHHHHC--STTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHHHHHHHhCC--CcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 34444555553 8999999999999998889999999998899999999976654
No 313
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.98 E-value=8.5e-10 Score=125.72 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+++++|++|+.+++++ .|++.+|+++.||.||+|+....
T Consensus 220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 3678888888888899999999999999887775 58889998899999999987754
No 314
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.97 E-value=4e-09 Score=111.32 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=89.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC---
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS--- 694 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--- 694 (864)
.+...+.+++|++|||+|||+|+.+.++++. ...+|+++|+++.+++.++++++..|+. +++++++|+.+++..
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGG
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccc
Confidence 3345567889999999999999999999986 3479999999999999999999999985 799999999887621
Q ss_pred -CCccEEEEc------hhhhhhCh---------hh-------HHHHHHHHHhccccCcEEEEEEecC
Q 002928 695 -NKYDRIISC------EMIEAVGH---------DY-------MEEFFGCCESLLAEHGLLLLQFISV 738 (864)
Q Consensus 695 -~~fD~v~s~------~~~~~~~~---------~~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 738 (864)
.+||.|++. +++..-++ ++ ..++++.+.++|+ ||+++..+.+.
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 579999973 23322111 11 2356888888887 99998877654
No 315
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.96 E-value=2.7e-09 Score=118.46 Aligned_cols=62 Identities=13% Similarity=-0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE--EEEECCCcEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR--IEIRGDDFQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~--~V~~~~G~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+++. |++|+++++|++|+.++++| .|++.+|++++||.||.|..... +.+.++
T Consensus 108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg 173 (399)
T 2x3n_A 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL 173 (399)
T ss_dssp HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence 6777888889888 89999999999999988888 89999998899999999987654 334454
No 316
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.96 E-value=9.3e-10 Score=123.12 Aligned_cols=112 Identities=19% Similarity=0.313 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (864)
...+.+++.+...++.+|||+|||+|.++..++++ .+.+|+|+|+++.+++.| .+++++++|+.+...
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP 95 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc
Confidence 45567777777666779999999999999999987 468999999999998877 379999999988776
Q ss_pred CCCccEEEEchhhhh----------hChh-----------------hHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 SNKYDRIISCEMIEA----------VGHD-----------------YMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~----------~~~~-----------------~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.++||+|+++..+.. +.++ ....+++.+.++|+|||++++....
T Consensus 96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 678999999743321 1111 1236789999999999999986644
No 317
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.96 E-value=2.6e-09 Score=123.46 Aligned_cols=58 Identities=10% Similarity=-0.066 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECC---C--cEEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGD---D--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~---G--~~~~ad~VV~A~~~~~ 271 (864)
...++..|++.+.+.|++|+.+++|++|..+++++ .|++.+ | .+++||.||+|+.++.
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 36899999999999999999999999999988874 466543 3 3689999999998764
No 318
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.95 E-value=1.4e-07 Score=101.28 Aligned_cols=173 Identities=10% Similarity=0.138 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCCC-----CCeEEEEcCCchHHHHHHHHh----------------cCCEEEEEeCCHHHHHHHHHHHH
Q 002928 615 MRKVSLLIQKARVSK-----GHEVLEIGCGWGTLAIEIVKQ----------------TGCKYTGITLSEEQLKYAEMKVK 673 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~-----~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gid~s~~~~~~a~~~~~ 673 (864)
..+++..++.+.+.+ ..+|+|+|||+|..+..++.. +..+|..-|+........=+.+.
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 445556666666543 579999999999999887432 23567777766655433222221
Q ss_pred Hc-----------CCCCCeEEEEc---cc-CCCCCCCCccEEEEchhhhhhCh---------------------------
Q 002928 674 EA-----------GLQDHIRLYLC---DY-RQLPKSNKYDRIISCEMIEAVGH--------------------------- 711 (864)
Q Consensus 674 ~~-----------~l~~~v~~~~~---d~-~~~~~~~~fD~v~s~~~~~~~~~--------------------------- 711 (864)
.. +...+-.|..+ .+ ..+-++++||+|+|+.++|++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 10 00001112222 22 12226789999999999999841
Q ss_pred ---------hhHHHHHHHHHhccccCcEEEEEEecCCCccccc------------------ccC----ccchhhhcccCC
Q 002928 712 ---------DYMEEFFGCCESLLAEHGLLLLQFISVPDQCYDE------------------HRL----SPGFIKEYIFPG 760 (864)
Q Consensus 712 ---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~----~~~~~~~~i~p~ 760 (864)
+|+..+|+..++.|+|||++++......+..... +.. ...++..+-.|
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P- 271 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP- 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc-
Confidence 2567789999999999999999888765532110 000 00111112223
Q ss_pred CCCCCHHHHHHHHhcCCCcEEEEEEecc
Q 002928 761 GCLPSLNRITSAMTSSSRLCVEDLENIG 788 (864)
Q Consensus 761 ~~~~~~~~~~~~l~~~~gf~v~~~~~~~ 788 (864)
.+.|+.+++.+.+++..||++..++.+.
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 3568999999998855899999987653
No 319
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.94 E-value=1.8e-08 Score=117.08 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE---EEEECCCc--EEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR---IEIRGDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~---~V~~~~G~--~~~ad~VV~A~~~~ 270 (864)
..+.+.|.+.+++.|++|+++++|++|..++ +++ .+...+|+ ++.||.||+|+..+
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~ 316 (571)
T 1y0p_A 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF 316 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence 5788999999999999999999999999876 654 33333675 68999999998765
No 320
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.94 E-value=7.4e-09 Score=120.16 Aligned_cols=58 Identities=7% Similarity=0.018 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE---EEEECCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR---IEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~---~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
...+.+.|.+.+++.|++|+++++|++|..++ +++ .+.+.+|+ ++.||.||+|+....
T Consensus 249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence 45788999999999999999999999999887 654 33334675 588999999987653
No 321
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.94 E-value=4.7e-09 Score=107.52 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+++.++++|||||||+|.++..+++. +.+|+++|+|+++++.+++++.. .++++++++|+.+++ +
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHH
Confidence 355678899999999999999999999999999997 78999999999999999998864 248999999999886 2
Q ss_pred ----CCCccEEEEchhh
Q 002928 694 ----SNKYDRIISCEMI 706 (864)
Q Consensus 694 ----~~~fD~v~s~~~~ 706 (864)
+++|| |+++..+
T Consensus 91 ~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GSCCSSCEE-EEEECCH
T ss_pred HhccCCCeE-EEecCCc
Confidence 35688 7776554
No 322
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.93 E-value=4.1e-09 Score=120.16 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=99.5
Q ss_pred CChHHHHhhcCCCCcccccccCCCCCCHHHHHHHHHHHHHHHcCC----CCCCeEEEEcCCchHH---HHHHHHhcCC--
Q 002928 583 LSNELFSLFLDKSMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARV----SKGHEVLEIGCGWGTL---AIEIVKQTGC-- 653 (864)
Q Consensus 583 ~~~~~~~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~----~~~~~vLDiGcG~G~~---~~~la~~~~~-- 653 (864)
+.+.-|+.|-.....| +.-|++..+.+.++... ..+..|||||||+|.+ +..++++.+.
T Consensus 319 L~s~tYevFEkD~vKy------------~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~v 386 (637)
T 4gqb_A 319 LESQTYEVFEKDPIKY------------SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRI 386 (637)
T ss_dssp CCHHHHHHHTTCHHHH------------HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhhhhhhhcCChhhH------------HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCc
Confidence 4556677765555444 12223333444444421 2345799999999999 5555555333
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 654 KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
+|++||.|+ +...|++..+++++.++|+++++|++++..++++|+|||-.|=...-.|.....+....+.|||||.++
T Consensus 387 kVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 387 KLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 789999997 778899999999999999999999999986689999999765443333555678888999999999874
No 323
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.93 E-value=3.1e-09 Score=118.90 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE--EEEECCCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR--IEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~--~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++.|++|+++++|++|+.+++++ .|.+.+|+ +++||.||.|+....
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 567778888888899999999999999987774 66678887 699999999987654
No 324
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.93 E-value=1.1e-08 Score=117.24 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEEEC-CCc--EEecC-EEEEccChH
Q 002928 213 RSRSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEIRG-DDF--QRVYD-GCIMAVHAP 270 (864)
Q Consensus 213 G~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~~~-~G~--~~~ad-~VV~A~~~~ 270 (864)
|...+.+.|.+.+++.|++|+++++|++|..+ ++++ .|.+. +|+ ++.|| .||+|+...
T Consensus 200 g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~ 263 (510)
T 4at0_A 200 GGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF 263 (510)
T ss_dssp TTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence 33489999999999999999999999999988 5654 34433 333 58896 999998765
No 325
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=98.92 E-value=3e-09 Score=122.14 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcCc--eEEeCcceEEEEEeCC--eEEEEECCCcEEecCEEEEccChH
Q 002928 218 VDKVIELLESLGC--QIKTGCEVRSVLQYGE--GRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 218 ~~~La~~~~~~G~--~I~~~~~V~~I~~~~~--~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+.|+ .|+++++|++++.+++ +|.|++.+|++++||.||+|+...
T Consensus 90 ~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~ 146 (540)
T 3gwf_A 90 LEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLL 146 (540)
T ss_dssp HHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence 3334444444576 8999999999998876 799999999889999999999853
No 326
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.91 E-value=1.3e-08 Score=116.03 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc---EEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF---QRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~---~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+.|++|+++++|++|+.++++|+|++.+++ +++||.||.|..... ..+.++
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 173 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence 56666777777789999999999999999889999887764 799999999976654 444554
No 327
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=98.91 E-value=3e-09 Score=122.32 Aligned_cols=38 Identities=29% Similarity=0.520 Sum_probs=35.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||||++||++|+.|++.|++|+|+|+++.+||..
T Consensus 23 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw 60 (549)
T 4ap3_A 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW 60 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred CEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 79999999999999999999999999999999998843
No 328
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.91 E-value=1.2e-09 Score=112.37 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=85.0
Q ss_pred HHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCCeEEEEcccCCC-C
Q 002928 621 LIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSE-------EQLKYAEMKVKEAGLQDHIRLYLCDYRQL-P 692 (864)
Q Consensus 621 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~-------~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~ 692 (864)
+...+.+.++.+|||+|||+|.+++.+|+. +++|+|+|+|+ ++++.|+++++.+++.++++++++|+.++ +
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP 153 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence 333345567889999999999999999997 88999999999 99999998887777665799999998875 2
Q ss_pred --CC--CCccEEEEchhhhhhC------------------hhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 693 --KS--NKYDRIISCEMIEAVG------------------HDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 693 --~~--~~fD~v~s~~~~~~~~------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
++ ++||+|++..++.+.. +.+.+.+++.+.++.+. ++++....
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~ 218 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPR 218 (258)
T ss_dssp HHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEET
T ss_pred hhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCC
Confidence 22 6899999987665532 12345566677776643 56665443
No 329
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.90 E-value=5.5e-09 Score=119.05 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc---EEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF---QRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~---~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+.|++|+++++|++|+.++++|+|++.++. +++||.||.|..... ..+.++
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 172 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG 172 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence 46666777777789999999999999999999988887764 799999999976554 344554
No 330
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.90 E-value=3.6e-09 Score=109.15 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+++.++ +|||||||+|.++..+++. +++|+++|+|+++++.+++++.. ++++++++|+.+++ +
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh
Confidence 3566789999999999 9999999999999999997 78999999999999999998752 48999999999887 3
Q ss_pred C-CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEE
Q 002928 694 S-NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQ 734 (864)
Q Consensus 694 ~-~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 734 (864)
+ ..+|.|+++..++ ++.+-...++.. ..-+.+.++++
T Consensus 107 ~~~~~~~iv~NlPy~-iss~il~~ll~~---~~~~~~~lm~Q 144 (271)
T 3fut_A 107 EVPQGSLLVANLPYH-IATPLVTRLLKT---GRFARLVFLVQ 144 (271)
T ss_dssp GSCTTEEEEEEECSS-CCHHHHHHHHHH---CCEEEEEEEEE
T ss_pred hccCccEEEecCccc-ccHHHHHHHhcC---CCCCEEEEEee
Confidence 2 3689999986554 332233333433 12234555554
No 331
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.89 E-value=1.9e-08 Score=110.68 Aligned_cols=53 Identities=15% Similarity=-0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++|+. + + .|++.+|++++||.||.|+....
T Consensus 108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 108 HLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSCEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCCEEEcCEEEECCCccH
Confidence 5677788888888999999999999987 3 4 78888888899999999987654
No 332
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.89 E-value=7.7e-09 Score=115.15 Aligned_cols=51 Identities=12% Similarity=-0.091 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeC-CeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYG-EGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+-+.|.+.+ +.+|+++++|++++..+ ++++|++++|++++||.||-|-...
T Consensus 114 L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~ 165 (412)
T 4hb9_A 114 LKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSN 165 (412)
T ss_dssp HHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTT
T ss_pred HHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCC
Confidence 444455544 56899999999998765 4689999999999999999995443
No 333
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.89 E-value=3e-09 Score=116.10 Aligned_cols=111 Identities=9% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-- 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (864)
..++..+++.+... +.+|||+|||+|.+++.+|+. ..+|+|+|+|+++++.|+++++.+++. +++++++|+.++.
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH
Confidence 45667777777654 578999999999999999985 679999999999999999999999984 8999999987652
Q ss_pred -CC--------------CCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 693 -KS--------------NKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 693 -~~--------------~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
.. .+||+|+....-. .+..++.++|+|+|+++..+.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred HhhccccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 11 3799999764322 234556777789998887554
No 334
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.88 E-value=6.4e-09 Score=120.37 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeEEEEEC-CC--cEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGRIEIRG-DD--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~~V~~~-~G--~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++.|++|+++++|++|+.+ ++.+.|++. +| .+++||.||.|+....
T Consensus 129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 57777888888889999999999999876 455778776 66 4799999999987654
No 335
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.87 E-value=1.1e-08 Score=116.98 Aligned_cols=58 Identities=12% Similarity=-0.063 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEE---CCCc--EEecCEEEEccChHH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
...++..|++.+.+.|++|+.+++|++|+.+++.+.|++ .+|+ +++||.||+|+.++.
T Consensus 148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 458999999999999999999999999998887677777 3565 689999999998775
No 336
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.86 E-value=2.7e-08 Score=115.15 Aligned_cols=57 Identities=12% Similarity=-0.108 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEEC---CCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRG---DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~---~G~--~~~ad~VV~A~~~~~ 271 (864)
..++..+++.+.+.|++|+.+++|++|..+++++ .|++. +|+ +++||.||+|+.++.
T Consensus 188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 4788889999999999999999999999988774 45532 233 699999999998774
No 337
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.84 E-value=7.1e-09 Score=112.60 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCCeEEEEcccCCCC
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA---------------GLQDHIRLYLCDYRQLP 692 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~---------------~l~~~v~~~~~d~~~~~ 692 (864)
++.+|||+|||+|..++.++++ .+.+|+++|+++++++.++++++.+ ++. +++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 6889999999999999999998 5679999999999999999999988 775 4999999987764
Q ss_pred --CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 693 --KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 693 --~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..++||+|+... .. ....+++.+.+.|||||.+++..
T Consensus 126 ~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 236899999653 21 13578899999999999888754
No 338
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=98.84 E-value=1.7e-08 Score=98.29 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCC---------------
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGL--QDHIRLYLCDYRQL--------------- 691 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--~~~v~~~~~d~~~~--------------- 691 (864)
+..+||||||| ..++.+|+.++++|+.||.+++..+.|++.+++.|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 56799999985 788888875578999999999999999999999998 88999999996542
Q ss_pred C----------CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEEe
Q 002928 692 P----------KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 692 ~----------~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+ ..++||+|+.-.- ....++..+.++|+|||++++..+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeCC
Confidence 1 2378999998753 124667778899999999987543
No 339
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.84 E-value=3.3e-09 Score=112.26 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC---CC----CCeEEEEcccCCCC-----CCC
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAG---LQ----DHIRLYLCDYRQLP-----KSN 695 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~---l~----~~v~~~~~d~~~~~-----~~~ 695 (864)
..+.+|||||||.|..+..+++.+..+|++||+++++++.|++.+...+ +. ++++++.+|+.+.. ..+
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 3568999999999999999998855799999999999999999865321 22 27999999987754 247
Q ss_pred CccEEEEchhh---hhhCh-hhHHHHHHHH----HhccccCcEEEEEEec
Q 002928 696 KYDRIISCEMI---EAVGH-DYMEEFFGCC----ESLLAEHGLLLLQFIS 737 (864)
Q Consensus 696 ~fD~v~s~~~~---~~~~~-~~~~~~l~~~----~~~LkpgG~l~i~~~~ 737 (864)
+||+|++...- ...+. -.-..+++.+ .++|+|||.++++...
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 89999987532 10110 0124555555 9999999999997644
No 340
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.83 E-value=1.1e-08 Score=118.10 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCC----eEEEEECCC---cEEecCEEEEccChHH-HHHhh
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGE----GRIEIRGDD---FQRVYDGCIMAVHAPD-ALRML 276 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~----~~~V~~~~G---~~~~ad~VV~A~~~~~-~~~ll 276 (864)
.+.+.|.+.+++.|++|+++++|++|+.+++ +|+|++.++ .+++||.||.|..... +.+.+
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l 189 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESL 189 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence 5667788888888999999999999999988 888888776 6899999999976653 33444
No 341
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.83 E-value=3.5e-09 Score=111.07 Aligned_cols=85 Identities=29% Similarity=0.443 Sum_probs=74.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP---K 693 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~ 693 (864)
++.+++.+.++++.+|||+|||+|+.+..+++. ++++|+|+|+|+++++.|+++++..+ ++++++++|+.+++ .
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence 457778888889999999999999999999998 46899999999999999999988776 48999999998875 1
Q ss_pred ---CCCccEEEEch
Q 002928 694 ---SNKYDRIISCE 704 (864)
Q Consensus 694 ---~~~fD~v~s~~ 704 (864)
..+||.|++..
T Consensus 93 ~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 93 TLGIEKVDGILMDL 106 (301)
T ss_dssp HTTCSCEEEEEEEC
T ss_pred hcCCCCCCEEEEcC
Confidence 15899999864
No 342
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.83 E-value=3.9e-09 Score=114.48 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCCC---CCCCccEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDH-IRLYLCDYRQLP---KSNKYDRII 701 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~d~~~~~---~~~~fD~v~ 701 (864)
++|.+|||++||+|.+++.++.+ .| .+|+++|++++.++.++++++.+++.++ ++++++|+.++. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 57889999999999999999996 35 5899999999999999999999999766 999999985542 135799999
Q ss_pred EchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 702 SCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 702 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
..- . + ....+++.+.++|+|||.++++.
T Consensus 131 lDP-~---g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---G--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---S--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---c--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 875 1 1 12568889999999999888755
No 343
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.83 E-value=2.6e-08 Score=104.77 Aligned_cols=37 Identities=38% Similarity=0.635 Sum_probs=34.9
Q ss_pred cEEEEcCChhHHHHHHHHHhC-CCeEEEEecCCCCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKA-GVEVVLYEKEDSLGGH 38 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~-G~~V~vlEa~~~~GG~ 38 (864)
||+|||||++||++|+.|+++ |.+|+|+|+++.+||.
T Consensus 41 dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~ 78 (284)
T 1rp0_A 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG 78 (284)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred CEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence 899999999999999999997 9999999999988773
No 344
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.82 E-value=1e-08 Score=111.65 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+++.|++++++++|++|+.++++|. |++.+| +++||+||+|+...
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 77 EVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 3444555666666999999999999999999999 998888 89999999999864
No 345
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.82 E-value=6.9e-09 Score=119.89 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEE--CCC-cEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIR--GDD-FQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~--~~G-~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+++.|++|+++++|++|+.++++++|++ .+| ++++||.||.|..... +.+.++
T Consensus 149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG 214 (570)
T 3fmw_A 149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA 214 (570)
T ss_dssp HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence 5666777777777999999999999999888888877 678 6899999999976543 444554
No 346
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.82 E-value=1.3e-08 Score=112.64 Aligned_cols=56 Identities=11% Similarity=-0.090 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeEEEEE-CCCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGRIEIR-GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~~V~~-~~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++|+.++ +++.|++ .+|+ +++||.||.|.....
T Consensus 104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S 163 (394)
T 1k0i_A 104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG 163 (394)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 456667777777799999999999998764 4577877 6886 699999999977653
No 347
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.80 E-value=1.1e-08 Score=117.23 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCe---EEEEECCCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEG---RIEIRGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~---~~V~~~~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++.|++|+++++|++|+.++++ +.+.+.+|+ +++||.||.|+....
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence 56777888888889999999999999998886 445556674 799999999987653
No 348
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.79 E-value=2.9e-08 Score=110.06 Aligned_cols=54 Identities=9% Similarity=-0.088 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+. +++|+++++|++|+.++++|+|++.+|++++||.||.|.....
T Consensus 129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 129 DLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp HHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTC
T ss_pred HHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcch
Confidence 45556666665 3689999999999998888999999998899999999987653
No 349
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=98.79 E-value=1.4e-08 Score=117.03 Aligned_cols=38 Identities=34% Similarity=0.541 Sum_probs=36.0
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||||++||++|+.|++.|++|+|+|+++.+||..
T Consensus 18 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w 55 (542)
T 1w4x_A 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW 55 (542)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 89999999999999999999999999999999999843
No 350
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.79 E-value=3.7e-08 Score=109.64 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhh-cC-ceEEeCcceEEEEEeCCeEEEEECC---C--cEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLES-LG-CQIKTGCEVRSVLQYGEGRIEIRGD---D--FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~-~G-~~I~~~~~V~~I~~~~~~~~V~~~~---G--~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+ .| ++|+++++|++|+. +++|+|++.+ | ++++||.||.|.....
T Consensus 108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S 169 (410)
T 3c96_A 108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHS 169 (410)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccc
Confidence 456666666665 36 58999999999988 7778887765 7 4789999999977654
No 351
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.79 E-value=1.3e-08 Score=110.04 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
+.+.+.+.+.+.+++++++++|++|+.+++.+.|++.+|+++.+|+||+|+..
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~ 119 (335)
T 2zbw_A 67 LVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGV 119 (335)
T ss_dssp HHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCC
Confidence 34445555666689999999999999888889999988888999999999876
No 352
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.78 E-value=5.8e-09 Score=119.83 Aligned_cols=38 Identities=34% Similarity=0.687 Sum_probs=35.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||||++||++|+.|++.|++|+|+|+++.+||..
T Consensus 11 dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw 48 (545)
T 3uox_A 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW 48 (545)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 79999999999999999999999999999999999843
No 353
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.77 E-value=9.9e-08 Score=110.57 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeE---EEEECCCc--EEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGR---IEIRGDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~---~V~~~~G~--~~~ad~VV~A~~~~ 270 (864)
...+.+.|.+.+++.|++|+++++|++|..++ +++ .+.+.+|+ ++.||.||+|+...
T Consensus 254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~ 316 (572)
T 1d4d_A 254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF 316 (572)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence 34788999999999999999999999998776 653 33333674 58899999998765
No 354
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.76 E-value=1.9e-08 Score=107.86 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.+.|+++++ ++|.+|..+++++.|.+.+|+++.+|.||+|+...
T Consensus 72 ~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 72 MIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK 124 (323)
T ss_dssp HHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence 444455556666899999 99999999888899999998899999999998765
No 355
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.75 E-value=2.3e-08 Score=112.54 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---Cc---EEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---DF---QRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G~---~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.+.+..|+++++|++|+..+++|.|++.+ |+ ++.||.||+|+..+
T Consensus 117 l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~ 176 (447)
T 2gv8_A 117 IQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 176 (447)
T ss_dssp HHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred HHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCC
Confidence 44444444444477899999999999988889888865 76 79999999998874
No 356
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.75 E-value=1.3e-08 Score=109.66 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcEEecCEEEEccCh
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
.+.+.+.+.+.+.|++++++++|++|+..++ .|.|.+.+|+ +.+|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~ 121 (332)
T 3lzw_A 68 ELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN 121 (332)
T ss_dssp HHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence 3455566666667999999999999998876 7899998884 999999999876
No 357
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.74 E-value=1.5e-08 Score=115.23 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||+|++.
T Consensus 232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 4678888889988999999999999999888889999999988999999999874
No 358
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.74 E-value=4.1e-07 Score=97.71 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=102.7
Q ss_pred CCeEEEEcCCchHHHHHHHHh------------------cCCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 002928 630 GHEVLEIGCGWGTLAIEIVKQ------------------TGCKYTGITLS-----------EEQLKYAEMKVKEAGLQDH 680 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~------------------~~~~v~gid~s-----------~~~~~~a~~~~~~~~l~~~ 680 (864)
..+|+|+||++|..+..+... +..+|..-|+. +.+.+.+++ ..|...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 579999999999999887765 34678889988 555444322 2232123
Q ss_pred eEEEEcccCCC----CCCCCccEEEEchhhhhhChh-------------------------------------hHHHHHH
Q 002928 681 IRLYLCDYRQL----PKSNKYDRIISCEMIEAVGHD-------------------------------------YMEEFFG 719 (864)
Q Consensus 681 v~~~~~d~~~~----~~~~~fD~v~s~~~~~~~~~~-------------------------------------~~~~~l~ 719 (864)
--|+.+.-..+ -+++++|+|+|+.++|++.+. |+..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46666664442 278999999999999997321 2233477
Q ss_pred HHHhccccCcEEEEEEecCCCc--ccc---cccC-----------ccchhhhcccCCCCCCCHHHHHHHHhcCCCcEEEE
Q 002928 720 CCESLLAEHGLLLLQFISVPDQ--CYD---EHRL-----------SPGFIKEYIFPGGCLPSLNRITSAMTSSSRLCVED 783 (864)
Q Consensus 720 ~~~~~LkpgG~l~i~~~~~~~~--~~~---~~~~-----------~~~~~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~ 783 (864)
...+.|+|||++++......+. ... .... ...-+..+-.| .+.|+.+++...+++..+|++..
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCceEEE
Confidence 7899999999999988876554 100 0000 00011112234 36789999999998755799998
Q ss_pred EEecc
Q 002928 784 LENIG 788 (864)
Q Consensus 784 ~~~~~ 788 (864)
++.+.
T Consensus 289 le~~~ 293 (384)
T 2efj_A 289 LETFN 293 (384)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87654
No 359
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.74 E-value=3.6e-08 Score=112.19 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEe---CCeEEEEE--C-CC--cEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQY---GEGRIEIR--G-DD--FQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~---~~~~~V~~--~-~G--~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+++.|++|+++++|++|+.+ ++.+.|++ . +| .+++||.||+|+...
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 45666777777779999999999999874 34577776 4 56 478999999998765
No 360
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.74 E-value=8.1e-08 Score=108.32 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEE-EEEC---CCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRI-EIRG---DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~-V~~~---~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+.+.|++|+++++|++++.+++++. |++. +|+ +++||.||.|.....
T Consensus 101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 5667788888778999999999999999888764 4443 675 789999999987654
No 361
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.74 E-value=1.8e-08 Score=110.02 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.+.|++++++++|++|+..++ .+.|++.+|+++++|.||+|+...
T Consensus 76 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 76 LVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp HHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence 344455556666899999999999998765 689999888889999999998763
No 362
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.73 E-value=4.4e-08 Score=108.74 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccCh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~ 269 (864)
...+.+.+.+.+++.|++|+++++|++|+.+++++ .|++.+|+++.||.||+|++.
T Consensus 183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 45788888999999999999999999999887775 588899989999999999875
No 363
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.73 E-value=3.8e-08 Score=102.18 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCE----EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCK----YTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQL 691 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~----v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (864)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+ |+|+|+|+++++.++++. .++++++++|+.++
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 45678889999999999999999999999999997 445 999999999999999883 24899999999988
Q ss_pred CCCC-------CccEEEEchhhh
Q 002928 692 PKSN-------KYDRIISCEMIE 707 (864)
Q Consensus 692 ~~~~-------~fD~v~s~~~~~ 707 (864)
+.+. ..+.|+++..+.
T Consensus 103 ~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEECCHH
T ss_pred ChhHhcccccCCceEEEEccCcc
Confidence 7211 234677765443
No 364
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.72 E-value=2.1e-08 Score=113.52 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=79.4
Q ss_pred CCeEEEEcCCchHHHHH---HHHhcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--
Q 002928 630 GHEVLEIGCGWGTLAIE---IVKQTG-----------CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPK-- 693 (864)
Q Consensus 630 ~~~vLDiGcG~G~~~~~---la~~~~-----------~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-- 693 (864)
+..|||||||+|.+... +++..+ .+|++||.|+..+...+.+.. +++.++|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 45899999999999643 332112 399999999977766666554 7898899999999999863
Q ss_pred ----CCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEE
Q 002928 694 ----SNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLL 732 (864)
Q Consensus 694 ----~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 732 (864)
.++.|+|||-.|=.....|.....+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 689999999877443333456778888899999999864
No 365
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.72 E-value=2.9e-08 Score=113.25 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=96.5
Q ss_pred hcCChHHHHhhcCCCCc---cccc-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhc-----
Q 002928 581 YDLSNELFSLFLDKSML---YSCA-IFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQT----- 651 (864)
Q Consensus 581 Yd~~~~~~~~~~~~~~~---ys~~-~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~----- 651 (864)
.|...+.|++++..... -..+ +|+. ...++.|++.+...++.+|||.+||+|.++..+++..
T Consensus 126 ~d~lG~~YE~ll~~~a~~~~~~~G~fyTP---------~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~ 196 (541)
T 2ar0_A 126 RDDFGDMYEGLLQKNANETKSGAGQYFTP---------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 196 (541)
T ss_dssp ------------------------CCCCC---------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCeeeCC---------HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhc
Confidence 45566677777654311 1112 3322 2344567777778889999999999999999888651
Q ss_pred --------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcccCCCC--CCCCccEEEEchhhhhhCh
Q 002928 652 --------------GCKYTGITLSEEQLKYAEMKVKEAGLQD----HIRLYLCDYRQLP--KSNKYDRIISCEMIEAVGH 711 (864)
Q Consensus 652 --------------~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~~~~--~~~~fD~v~s~~~~~~~~~ 711 (864)
..+++|+|+++.+++.|+.++...++.. ++.+.++|....+ ..++||+|+++..+.....
T Consensus 197 ~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~ 276 (541)
T 2ar0_A 197 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG 276 (541)
T ss_dssp TTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSS
T ss_pred ccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccc
Confidence 2479999999999999999988777753 2789999976643 4578999999877654321
Q ss_pred ------------hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 712 ------------DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 712 ------------~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
.....+++.+.+.|||||++++...
T Consensus 277 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 277 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 1123789999999999999988653
No 366
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.70 E-value=4.5e-08 Score=107.20 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+++.|++|+++++|++|+.+++++.|.+.+| ++.||+||+|+...
T Consensus 89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~ 142 (369)
T 3d1c_A 89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDY 142 (369)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence 4555566666667999999999999998877899998887 69999999999865
No 367
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.70 E-value=3.6e-08 Score=100.78 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
...++.+++.+.+.++++|||||||+|.++..+++....+|+|+|+|+.+++.++++ . ..+++++++|+.+++ +
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChh
Confidence 356678899999999999999999999999999997348999999999999999877 1 248999999999987 2
Q ss_pred C--CCccEEEEchhh
Q 002928 694 S--NKYDRIISCEMI 706 (864)
Q Consensus 694 ~--~~fD~v~s~~~~ 706 (864)
+ +.| .|+++..+
T Consensus 92 ~~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 92 SLGKEL-KVVGNLPY 105 (249)
T ss_dssp GSCSSE-EEEEECCT
T ss_pred HccCCc-EEEEECch
Confidence 1 233 66666544
No 368
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.69 E-value=9.8e-08 Score=111.60 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|+++++|++|..+++++ .|.+ .+|+ .+.|+.||+|+..+.
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 4788999999988899999999999998877754 2322 5665 489999999998764
No 369
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.69 E-value=1.5e-07 Score=108.60 Aligned_cols=56 Identities=14% Similarity=-0.035 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+.|++++.+ +|++|+.++++ +.|++.+|++++||.||.|+....
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence 478888999988889999999 89999886554 578888887899999999987653
No 370
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.69 E-value=6.3e-08 Score=113.94 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-------------------------------------------cC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-------------------------------------------TG 652 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-------------------------------------------~~ 652 (864)
.....++...+.+++.+|||.+||+|.+++.+|.. +.
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 44556778888889999999999999999988864 12
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C--CCCccEEEEchhhhh-hC-hhhHHHHHHHHHhcc--
Q 002928 653 CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K--SNKYDRIISCEMIEA-VG-HDYMEEFFGCCESLL-- 725 (864)
Q Consensus 653 ~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~--~~~fD~v~s~~~~~~-~~-~~~~~~~l~~~~~~L-- 725 (864)
.+|+|+|+++.+++.|++++..+|+.+.|++.++|+.++. + .++||+|+++-.+.. ++ .++...+++.+.+.|
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888999999999885 2 238999999966422 22 234555555555554
Q ss_pred -ccCcEEEEEE
Q 002928 726 -AEHGLLLLQF 735 (864)
Q Consensus 726 -kpgG~l~i~~ 735 (864)
.|||.+++.+
T Consensus 337 ~~~g~~~~ilt 347 (703)
T 3v97_A 337 QFGGWNLSLFS 347 (703)
T ss_dssp HCTTCEEEEEE
T ss_pred hCCCCeEEEEe
Confidence 4799999854
No 371
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.69 E-value=1.8e-07 Score=108.39 Aligned_cols=57 Identities=4% Similarity=-0.128 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEe-CCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQY-GEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~-~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+.|++|+++++|++|..+ ++++ .|.. .+|+ ++.|+.||+|+....
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 578899999999899999999999999886 5554 3332 4565 588999999998753
No 372
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.68 E-value=1e-07 Score=106.11 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccCh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~ 269 (864)
...+.+.+.+.+++.|++|+++++|++|+.+++++ .|++.+|+++.||.||+|++.
T Consensus 193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~ 249 (415)
T 3lxd_A 193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI 249 (415)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 35788888889999999999999999998877776 788899989999999999874
No 373
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.67 E-value=7.3e-09 Score=105.79 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=77.1
Q ss_pred HHHHHHcCCCCC--CeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCCeEEEEccc
Q 002928 619 SLLIQKARVSKG--HEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA-------G-LQDHIRLYLCDY 688 (864)
Q Consensus 619 ~~~~~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-------~-l~~~v~~~~~d~ 688 (864)
+.+++.+.++++ .+|||+|||+|..+..+|+. +++|+++|+++.+++.+++.++.. + +.++++++++|.
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 466677777788 99999999999999999998 889999999999877776665432 1 224799999998
Q ss_pred CCC-C-CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCc
Q 002928 689 RQL-P-KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHG 729 (864)
Q Consensus 689 ~~~-~-~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG 729 (864)
.++ + ..++||+|++..++.+-. + ...+++..++|++.+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~~-~--saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHKQ-K--SALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCCC-C-------HHHHHHHHHS
T ss_pred HHHHHhCcccCCEEEEcCCCCCcc-c--chHHHHHHHHHHHhh
Confidence 764 3 234799999998886632 1 244445555555533
No 374
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.67 E-value=2.7e-07 Score=107.11 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE---CCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR---GDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~---~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.|++|+++++|++|..+++++ .|.+ .+|+ .+.|+.||+|+....
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4788999999999999999999999998877764 2333 4665 588999999998764
No 375
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.66 E-value=8.9e-08 Score=107.89 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+..++++.|.+.+| ++.||.||+|++.
T Consensus 189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~ 242 (452)
T 3oc4_A 189 KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL 242 (452)
T ss_dssp HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence 57888899999999999999999999998788888888777 8999999999864
No 376
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.65 E-value=1.3e-07 Score=100.14 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=35.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~GG~ 38 (864)
.||+|||||++||++|++|+++ |++|+|+|+++.+||.
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg 119 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG 119 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence 4899999999999999999997 9999999999888873
No 377
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.65 E-value=7.9e-08 Score=108.68 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEE-ECCCcEEecCEEEEccCh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEI-RGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~-~~~G~~~~ad~VV~A~~~ 269 (864)
...+.+.+.+.+++.|++|+++++|++|+.++++ +.|+ +.+|+ +.||.||+|++.
T Consensus 210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~ 266 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR 266 (463)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence 3578888999999999999999999999887665 6888 88886 999999999864
No 378
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.65 E-value=6.4e-08 Score=104.47 Aligned_cols=53 Identities=23% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC---CCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG---DDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~---~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.+.|+++++++ |.+|..+++.+.+.+. ++.++.+|.||+|+...
T Consensus 86 ~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~ 141 (338)
T 3itj_A 86 LMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGAS 141 (338)
T ss_dssp HHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCC
Confidence 34445555566699999999 9999988888988883 66789999999998763
No 379
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.64 E-value=3.8e-08 Score=111.66 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
...+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||+|++.
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 35788889999999999999999999998877888888888989999999999874
No 380
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.63 E-value=2.1e-08 Score=108.77 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcccCCC-C--CCCCccEEEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA--GLQDHIRLYLCDYRQL-P--KSNKYDRIIS 702 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l~~~v~~~~~d~~~~-~--~~~~fD~v~s 702 (864)
.+|.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++++.. |+ ++++++++|+.+. + .+++||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 45899999999999999999987 889999999999999999999987 77 5899999999885 3 2358999999
Q ss_pred ch
Q 002928 703 CE 704 (864)
Q Consensus 703 ~~ 704 (864)
.-
T Consensus 170 DP 171 (410)
T 3ll7_A 170 DP 171 (410)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 381
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.63 E-value=4.3e-08 Score=111.51 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=104.9
Q ss_pred hcCChHHHHhhcCC----CCcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-c----
Q 002928 581 YDLSNELFSLFLDK----SMLYSCAIFKSEHEDLEVAQMRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-T---- 651 (864)
Q Consensus 581 Yd~~~~~~~~~~~~----~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~---- 651 (864)
.|...+.|++++.. ...-...+|+. ...++.|++.+...++ +|||.+||+|.+...+++. .
T Consensus 202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP---------~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~ 271 (544)
T 3khk_A 202 KDILGHVYEYFLGQFALAEGKQGGQYYTP---------KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHAN 271 (544)
T ss_dssp CCSHHHHHHHHHHHHHHTTTCCSTTTCCC---------HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCccCCeEeCC---------HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhcc
Confidence 46666777776642 11111223332 3556677777777666 9999999999999887653 1
Q ss_pred -----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEchhhhh----------
Q 002928 652 -----------GCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP--KSNKYDRIISCEMIEA---------- 708 (864)
Q Consensus 652 -----------~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~v~s~~~~~~---------- 708 (864)
..+++|+|+++.+++.|+.++...|+..++.+.++|....+ .+.+||+|+++-.+..
T Consensus 272 ~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~ 351 (544)
T 3khk_A 272 VKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLAD 351 (544)
T ss_dssp HHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTT
T ss_pred ccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhh
Confidence 46899999999999999999988888766666888876554 4578999999876542
Q ss_pred ---------------hChh--hHHHHHHHHHhccccCcEEEEEEe
Q 002928 709 ---------------VGHD--YMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 709 ---------------~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
++.. .--.+++.+.+.|||||++.+...
T Consensus 352 d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 352 DPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp CGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 1110 012589999999999999988543
No 382
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.63 E-value=1.9e-07 Score=108.30 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEE-EEECC------C---------cEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRI-EIRGD------D---------FQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~-V~~~~------G---------~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++.|++|+++++|++|..+++ ++. |++.+ | .+++||.||.|.....
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 6777888888888999999999999988764 453 77652 3 5799999999977654
No 383
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.62 E-value=1.3e-07 Score=106.85 Aligned_cols=39 Identities=33% Similarity=0.608 Sum_probs=36.3
Q ss_pred CcEEEEcCChhHHHHHHHHHh---CCCe---EEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAK---AGVE---VVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~---~G~~---V~vlEa~~~~GG~~ 39 (864)
+||+|||||++||+||..|++ .|++ |+|+|+++.+||..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w 47 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQW 47 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGG
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEe
Confidence 589999999999999999999 9999 99999999998843
No 384
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.62 E-value=1.3e-07 Score=106.63 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
...+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++++|.||+|+...
T Consensus 207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR 263 (455)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence 357788888888889999999999999998888888888888889999999998753
No 385
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.61 E-value=1.9e-07 Score=99.56 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 219 DKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 219 ~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.|++++. ++|++|+.+++++.|++.+|+++++|.||+|+...
T Consensus 63 ~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~ 113 (311)
T 2q0l_A 63 QPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS 113 (311)
T ss_dssp HHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCC
Confidence 3344445556899988 89999999888888988888889999999998753
No 386
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.60 E-value=2.2e-07 Score=106.57 Aligned_cols=56 Identities=13% Similarity=-0.070 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+.+.|++++.+ +|++|+.++++ +.|++.+|++++||.||.|+....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 478888888888889999999 99999886555 678888888899999999987653
No 387
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.59 E-value=1.7e-07 Score=107.57 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe----EEEEECCCc-EEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG----RIEIRGDDF-QRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~----~~V~~~~G~-~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.++++ +.|++.+|+ ++.||.||+|++.
T Consensus 255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE 314 (523)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence 467888999999999999999999999876555 778888887 7999999999864
No 388
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.59 E-value=2.9e-07 Score=89.42 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+++.|++++++ +|++|+.+++++.|++.+| +++||.||+|+...
T Consensus 58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence 4555666677779999999 9999998888899999888 89999999998754
No 389
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.58 E-value=1.7e-07 Score=108.21 Aligned_cols=56 Identities=11% Similarity=-0.054 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhc-CceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESL-GCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++. |++|+++ +|++|+.++++ +.|++.+|++++||.||.|+....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence 36888899999888 9999999 99999886554 678888888899999999987653
No 390
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.57 E-value=2.2e-07 Score=104.53 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe-EEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG-RIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.++++ +.|++.+|+++++|.||+|+..
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 367788888888889999999999999876544 7888889988999999999864
No 391
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.57 E-value=6.7e-08 Score=110.37 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|++++||.||+|++.
T Consensus 223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 277 (499)
T 1xdi_A 223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS 277 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC
Confidence 3678888899999999999999999999877778888888888999999999864
No 392
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.57 E-value=4.9e-07 Score=103.91 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhh-cCceEEeCcceEEEEEeCCe--EEEEECCCcEEecCEEEEccChHH
Q 002928 216 SYVDKVIELLES-LGCQIKTGCEVRSVLQYGEG--RIEIRGDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~--~~V~~~~G~~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++ .|++++.+ .|++|+.++++ +.|++.+|++++||.||.|+....
T Consensus 176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence 677888888888 89999999 59999887554 467788877899999999987653
No 393
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.57 E-value=2.6e-07 Score=104.35 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCc-EEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDF-QRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~-~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+ ++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 262 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR 262 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence 367778888888999999999999999987777889899998 8999999999864
No 394
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.57 E-value=2.6e-07 Score=93.82 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+++. |++++ +++|++|..+++++ .|.+.+|++++||.||+|+...
T Consensus 69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 69 AFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 4556677777776 89998 67999999888875 6888888889999999998764
No 395
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.56 E-value=3.3e-07 Score=105.74 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---C--cEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---D--FQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G--~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+-+.|.+.+.+. |+++++|++|+.++++|+|++.+ | .+++||.||.|..... ..+.++
T Consensus 139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg 203 (549)
T 2r0c_A 139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALG 203 (549)
T ss_dssp HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcC
Confidence 4555677777654 99999999999998888887765 6 4699999999976654 344454
No 396
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.56 E-value=4e-07 Score=102.82 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeE-EEEE--CCCcEEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGR-IEIR--GDDFQRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~-~V~~--~~G~~~~ad~VV~A~~~~~ 271 (864)
..+.+.|.+.+++.|++|+++++| +|..+++++ .|.. .+| ++.||.||+|+....
T Consensus 119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~~ 176 (472)
T 2e5v_A 119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGYS 176 (472)
T ss_dssp HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCCc
Confidence 467888888887789999999999 998887765 2333 344 688999999987764
No 397
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.55 E-value=2.8e-08 Score=101.71 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCK--YTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP- 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~--v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (864)
..++.+++.+.+.++++|||||||+|.++. +++ +.+ |+++|+|+++++.++++.... ++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence 456788888899999999999999999999 654 467 999999999999999876532 38999999999887
Q ss_pred CC-----CCccEEEEchhh
Q 002928 693 KS-----NKYDRIISCEMI 706 (864)
Q Consensus 693 ~~-----~~fD~v~s~~~~ 706 (864)
++ +..|.|+++..+
T Consensus 82 ~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHTSCEEEEEECCT
T ss_pred HHhhcccCCceEEEECCCC
Confidence 21 234788887654
No 398
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.54 E-value=4e-07 Score=96.01 Aligned_cols=37 Identities=38% Similarity=0.648 Sum_probs=35.1
Q ss_pred cEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCCCCc
Q 002928 2 RAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLGGH 38 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~GG~ 38 (864)
||+|||||++||+||+.|+++ |++|+|+|+++.+||.
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg 105 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 105 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence 899999999999999999998 9999999999998873
No 399
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.54 E-value=4.7e-07 Score=103.47 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhh-cCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLES-LGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+++ .|++| ++++|+.|..+++++ .|.+.+|.++.||.||+|+...
T Consensus 124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~ 179 (637)
T 2zxi_A 124 RYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF 179 (637)
T ss_dssp HHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred HHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence 567778888877 48999 678999998888876 6888899889999999999865
No 400
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.54 E-value=2.9e-07 Score=98.86 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=33.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
+||+|||||++||++|+.|++.|++|+|+|++ .+||.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~ 45 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQ 45 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGG
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcc
Confidence 37999999999999999999999999999998 57773
No 401
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.53 E-value=1.3e-07 Score=107.88 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC---C--cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD---D--FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~---G--~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+.+++++.|++.+ | +++.+|.||+|++.
T Consensus 239 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 239 GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 5678888888999999999999999999888887776652 4 57999999999864
No 402
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.53 E-value=4.3e-07 Score=96.78 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHh-----------------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-
Q 002928 629 KGHEVLEIGCGWGTLAIEIVKQ-----------------TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQ- 690 (864)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-----------------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~- 690 (864)
...+|+|+||++|..+..+... +..+|...|+.......+-+.+.......+-.|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999887765433 2468999999998888776665421100123455544333
Q ss_pred --CC-CCCCccEEEEchhhhhhCh-------------------------------hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 691 --LP-KSNKYDRIISCEMIEAVGH-------------------------------DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 691 --~~-~~~~fD~v~s~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
-. +++++|.|+|+.++|++.+ +|+..+|+...+.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 22 7899999999999999732 2456679999999999999999988
Q ss_pred cCCCccc-cc-----ccC-cc--------ch-----hhhcccCCCCCCCHHHHHHHHhcCCCcEEEEEEec
Q 002928 737 SVPDQCY-DE-----HRL-SP--------GF-----IKEYIFPGGCLPSLNRITSAMTSSSRLCVEDLENI 787 (864)
Q Consensus 737 ~~~~~~~-~~-----~~~-~~--------~~-----~~~~i~p~~~~~~~~~~~~~l~~~~gf~v~~~~~~ 787 (864)
..++... .. +.. .. .. +..+..| .+.|+.+++...+++..+|++..++.+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 7655321 00 000 00 00 1122233 467899999999998556788887654
No 403
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.53 E-value=4e-07 Score=103.04 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=34.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCC-----CeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAG-----VEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G-----~~V~vlEa~~~~GG 37 (864)
||+|||||++||++|..|++.| .+|+|||+++.+|+
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~ 72 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW 72 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence 8999999999999999999999 99999999998774
No 404
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.53 E-value=4.7e-07 Score=103.91 Aligned_cols=56 Identities=2% Similarity=-0.118 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhh-cCceEEeCcceEEEEE-eCC------eE-EEEEC---CCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLES-LGCQIKTGCEVRSVLQ-YGE------GR-IEIRG---DDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~-~G~~I~~~~~V~~I~~-~~~------~~-~V~~~---~G~--~~~ad~VV~A~~~~~ 271 (864)
.+.+.|.+.+++ .|++|+++++|++|.. +++ ++ .|.+. +|+ ++.|+.||+|+....
T Consensus 139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 208 (540)
T 1chu_A 139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS 208 (540)
T ss_dssp ---CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 567777888877 6999999999999988 444 54 34443 565 689999999987654
No 405
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.53 E-value=5.3e-08 Score=97.91 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-K 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (864)
.|+..+.++..++++.+|||+|||+|+++..++++.+ ..|+|+|++.++....... ...+ .++.....++.... .
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l~ 137 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRLE 137 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTSC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhcC
Confidence 5677888886789999999999999999999998733 4789999985431111000 0001 14455666654333 4
Q ss_pred CCCccEEEEchhhhhhChhhHH-----HHHHHHHhccccC-cEEEEEEec
Q 002928 694 SNKYDRIISCEMIEAVGHDYME-----EFFGCCESLLAEH-GLLLLQFIS 737 (864)
Q Consensus 694 ~~~fD~v~s~~~~~~~~~~~~~-----~~l~~~~~~Lkpg-G~l~i~~~~ 737 (864)
+++||+|+|..+.. .|....+ .+++.+.++|||| |.|++-.+.
T Consensus 138 ~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 138 PVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 57899999986554 3332222 3478889999999 999995544
No 406
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.53 E-value=3.6e-07 Score=96.49 Aligned_cols=52 Identities=10% Similarity=-0.064 Sum_probs=40.0
Q ss_pred HHHHHHHHhhc-CceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 218 VDKVIELLESL-GCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 218 ~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+. ++++. +++|++|+.+++++.|++.+|+++.+|.||+|+...
T Consensus 59 ~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~ 111 (297)
T 3fbs_A 59 IAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVT 111 (297)
T ss_dssp HHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 33344445544 45654 569999999988999999999889999999998764
No 407
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.52 E-value=1.6e-07 Score=101.10 Aligned_cols=52 Identities=25% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 217 YVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 217 l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.+.+.|++++.++ |.+|+..+++++|++ +|+++++|.||+|+...
T Consensus 72 ~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~ 123 (333)
T 1vdc_A 72 LTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 123 (333)
T ss_dssp HHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence 34444555556699999987 999988778888888 77789999999998764
No 408
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.51 E-value=1.3e-07 Score=110.41 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.++++ |++.+|+++.||.||+|++.
T Consensus 228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 228 YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGV 280 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCE
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCC
Confidence 467888899999999999999999999765554 66678889999999999874
No 409
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.51 E-value=4.4e-07 Score=97.13 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=38.6
Q ss_pred HHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 220 KVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 220 ~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.|++++. ++|++|+.+++.+.|.+ +++++.+|.||+|+...
T Consensus 77 ~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~ 125 (319)
T 3cty_A 77 LFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTT 125 (319)
T ss_dssp HHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEE
T ss_pred HHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCC
Confidence 344455556889888 78999998888888887 55589999999998754
No 410
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.51 E-value=3.2e-07 Score=97.45 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.2
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||||+|||+||++|+++|++|+|+|++. +||
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg 42 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRN 42 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCC
Confidence 89999999999999999999999999999864 454
No 411
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.50 E-value=7.7e-07 Score=102.10 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhh-cCceEEeCcceEEEEEeCCeE-EEEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLES-LGCQIKTGCEVRSVLQYGEGR-IEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~-~G~~I~~~~~V~~I~~~~~~~-~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+++ .|++| ++++|+.|..+++++ .|.+.+|.++.||.||+|+...
T Consensus 125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~ 180 (651)
T 3ces_A 125 LYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF 180 (651)
T ss_dssp HHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred HHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence 567777888877 58999 678999998877775 7888888889999999998875
No 412
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.50 E-value=1e-06 Score=102.23 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcC-ceEEeCcceEEEEEeCCeE---EEE-ECCCc--EEecCEEEEccChHH
Q 002928 215 RSYVDKVIELLESLG-CQIKTGCEVRSVLQYGEGR---IEI-RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 215 ~~l~~~La~~~~~~G-~~I~~~~~V~~I~~~~~~~---~V~-~~~G~--~~~ad~VV~A~~~~~ 271 (864)
..+...|.+.+.+.| ++|+++++|++|..+++++ .+. +.+|+ ++.|+.||+|+....
T Consensus 134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 478889999998888 9999999999999887764 232 25676 689999999988754
No 413
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.50 E-value=3.6e-07 Score=103.63 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHHHcC----CCCCCeEEEEcCCchHHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEc
Q 002928 616 RKVSLLIQKAR----VSKGHEVLEIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYAEMKVKEAGLQ-DHIRLYLC 686 (864)
Q Consensus 616 ~~~~~~~~~l~----~~~~~~vLDiGcG~G~~~~~la~~----~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~ 686 (864)
...+.|++.+. ..++.+|||.+||+|.+...+++. ...+++|+|+++.+++.|+.++...|+. +++.+.++
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence 34455555554 457889999999999999988876 2578999999999999999998888875 47899999
Q ss_pred ccCCC--C--CCCCccEEEEchhhhhh-------------------Ch-hh-HHHHHHHHHhccc-cCcEEEEEEe
Q 002928 687 DYRQL--P--KSNKYDRIISCEMIEAV-------------------GH-DY-MEEFFGCCESLLA-EHGLLLLQFI 736 (864)
Q Consensus 687 d~~~~--~--~~~~fD~v~s~~~~~~~-------------------~~-~~-~~~~l~~~~~~Lk-pgG~l~i~~~ 736 (864)
|.... + ...+||+|+++..+..- +. .+ --.+++.+.+.|| |||++.+...
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 97765 4 45789999998654210 00 00 1247999999999 9999987543
No 414
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.50 E-value=2.9e-07 Score=104.28 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=44.9
Q ss_pred HHHHHHHHHHH-hhcCceEEeCcceEEEEEeCCeEEEEEC--CC--cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELL-ESLGCQIKTGCEVRSVLQYGEGRIEIRG--DD--FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~-~~~G~~I~~~~~V~~I~~~~~~~~V~~~--~G--~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+ ++.|++|+++++|++|+.+++++.|++. +| +++.+|.||+|++.
T Consensus 215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR 274 (468)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence 46778888888 8889999999999999887777777765 66 57999999999864
No 415
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.49 E-value=2.3e-07 Score=105.29 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCC---cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDD---FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G---~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|++.++ +++.+|.||+|++.
T Consensus 221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 221 EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 46788888899999999999999999998888887777654 57899999999864
No 416
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.47 E-value=7.6e-07 Score=91.75 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcccCCCC--CCCCccEE
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEA--G--LQDHIRLYLCDYRQLP--KSNKYDRI 700 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~--l~~~v~~~~~d~~~~~--~~~~fD~v 700 (864)
+...+||-||.|.|+.+..+++. +..+|+.|||+++.++.+++.+... + -..+++++.+|....- ..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45579999999999999999997 4579999999999999999986531 1 1358999999988765 56789999
Q ss_pred EEchhhhhhChh--hHHHHHHHHHhccccCcEEEEEEec
Q 002928 701 ISCEMIEAVGHD--YMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
+.-..=..-+.. .-..+++.++++|+|||.++.+.-+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 975321000000 2267999999999999999997643
No 417
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.47 E-value=3.6e-07 Score=93.43 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHh--------cC-----CEEEEEeCCH---HHHH-----------HHHHHHHHc----
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQ--------TG-----CKYTGITLSE---EQLK-----------YAEMKVKEA---- 675 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--------~~-----~~v~gid~s~---~~~~-----------~a~~~~~~~---- 675 (864)
.+++.+|||||||+|..+..+++. +. .+++++|..+ ++++ .|++.++..
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 345679999999999999886653 22 4899999876 4444 566665541
Q ss_pred ------CCC---CCeEEEEcccCC-CC-CC----CCccEEEEchhh-hhhChhhHHHHHHHHHhccccCcEEEE
Q 002928 676 ------GLQ---DHIRLYLCDYRQ-LP-KS----NKYDRIISCEMI-EAVGHDYMEEFFGCCESLLAEHGLLLL 733 (864)
Q Consensus 676 ------~l~---~~v~~~~~d~~~-~~-~~----~~fD~v~s~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i 733 (864)
.+. .+++++.+|+.+ ++ .+ ..||+|+....- ...++=..+.+|+.+.++|||||+++.
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 011 367899999877 44 22 379999986421 111110136899999999999999884
No 418
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.46 E-value=5.1e-07 Score=101.69 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++++...+.+|+++.||.||+|++.
T Consensus 191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~ 245 (452)
T 2cdu_A 191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF 245 (452)
T ss_dssp HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence 4678888999999999999999999998767777533447778999999999864
No 419
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.45 E-value=8.5e-07 Score=104.16 Aligned_cols=62 Identities=11% Similarity=-0.084 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCc--eEEeCcceEEEEEeCC----eEEEEEC------CC--cEEecCEEEEccChHH-HHHhhc
Q 002928 216 SYVDKVIELLESLGC--QIKTGCEVRSVLQYGE----GRIEIRG------DD--FQRVYDGCIMAVHAPD-ALRMLG 277 (864)
Q Consensus 216 ~l~~~La~~~~~~G~--~I~~~~~V~~I~~~~~----~~~V~~~------~G--~~~~ad~VV~A~~~~~-~~~ll~ 277 (864)
.+.+.|.+.+.+.|+ +|+++++|++|+.+++ +|+|++. +| ++++||.||.|..... ..+.++
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg 218 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG 218 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence 566778888888887 9999999999998763 5777654 45 4689999999976654 444554
No 420
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.45 E-value=5.6e-07 Score=95.78 Aligned_cols=51 Identities=6% Similarity=-0.065 Sum_probs=40.8
Q ss_pred HHHHHHhhcCceEEeCcceEEEEEeC---CeEEEEECCCcEEecCEEEEccChH
Q 002928 220 KVIELLESLGCQIKTGCEVRSVLQYG---EGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 220 ~La~~~~~~G~~I~~~~~V~~I~~~~---~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.|++++.+++|+.|..+. +.+.|++.+|+++++|+||+|+...
T Consensus 61 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 114 (310)
T 1fl2_A 61 ALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (310)
T ss_dssp HHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence 34444556689999999999997653 3688999888889999999998764
No 421
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.44 E-value=8.7e-07 Score=101.66 Aligned_cols=54 Identities=11% Similarity=-0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhc-CceEEeCcceEEEEEeCCeEE-EEECCCcEEecCEEEEccChH
Q 002928 216 SYVDKVIELLESL-GCQIKTGCEVRSVLQYGEGRI-EIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~~I~~~~~V~~I~~~~~~~~-V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.|.+.+++. |++|+ +..|+.|..+++++. |.+.+|+++.||.||+|+...
T Consensus 118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~ 173 (641)
T 3cp8_A 118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF 173 (641)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence 5666777777764 89995 569999988888875 888889899999999998865
No 422
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.42 E-value=3.7e-07 Score=106.07 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEE-------------------eCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQ-------------------YGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~-------------------~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|+++++++.|.+|+. .++++.+++.+|+++.||.||+|++.
T Consensus 192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 46778888888889999999999999987 36678888888989999999999874
No 423
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.42 E-value=2.9e-06 Score=94.14 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++++++++|++|+. ++ |++++|+++++|.||++++.
T Consensus 218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~~~~~D~vi~a~G~ 268 (409)
T 3h8l_A 218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGNTIPADITILLPPY 268 (409)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEETTSCEEECSEEEEECCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCCEEeeeEEEECCCC
Confidence 46788888888889999999999999863 33 67788989999999999864
No 424
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.9e-07 Score=103.42 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECCC-cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGDD-FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~G-~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.++++ +.|++.+| +++.+|.||+|++.
T Consensus 226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 283 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR 283 (479)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence 467788888888889999999999999876554 78888888 78999999999864
No 425
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.40 E-value=1.8e-07 Score=106.42 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++ .+.|++.+|+++.||.||+|++.
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 46788889999999999999999999988764 47888889888999999999864
No 426
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.40 E-value=1.1e-06 Score=97.38 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
..+.+.+.+.+++.|++|+++++|.+|+.++....|++.+|+++.||.||+|++..
T Consensus 185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~ 240 (410)
T 3ef6_A 185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE 240 (410)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence 35777788888888999999999999987654457889999999999999998753
No 427
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.39 E-value=4.2e-06 Score=98.16 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhc-Cc-eEEeCcceEEEEEeCC---eE-EEE---ECCCc--EEecCEEEEccChHH
Q 002928 216 SYVDKVIELLESL-GC-QIKTGCEVRSVLQYGE---GR-IEI---RGDDF--QRVYDGCIMAVHAPD 271 (864)
Q Consensus 216 ~l~~~La~~~~~~-G~-~I~~~~~V~~I~~~~~---~~-~V~---~~~G~--~~~ad~VV~A~~~~~ 271 (864)
.+...|.+.+++. |+ +|+++++|++|..+++ ++ .|. ..+|+ .+.|+.||+|+....
T Consensus 152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 4677778888777 99 9999999999988776 65 232 24564 589999999987653
No 428
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.38 E-value=6.5e-07 Score=95.76 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=37.6
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.|++++.++ |+.|+..++.|.| +.+|+++.+|+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~ 115 (320)
T 1trb_A 68 MHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGAS 115 (320)
T ss_dssp HHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEE
T ss_pred HHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCC
Confidence 3344445589999987 9999887778888 6677789999999998753
No 429
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.38 E-value=3.2e-07 Score=104.41 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=39.4
Q ss_pred HHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 223 ELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 223 ~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.++++|++|++++.|++|+.+++...|.+.+|+++.||.||+|++..
T Consensus 265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~ 312 (493)
T 1y56_A 265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRR 312 (493)
T ss_dssp HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEE
T ss_pred HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcC
Confidence 666777999999999999986544446778888899999999998753
No 430
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.38 E-value=4.2e-07 Score=103.43 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+.+++ .+.|++.+|++++||.||+|++.
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 46788888999999999999999999987654 47888889988999999999864
No 431
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=7.3e-07 Score=96.12 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEE-EECCCcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIE-IRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V-~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+.+.|+++++++ |.+|+. ++.+.| .+.+|+++.+|+||+|+...
T Consensus 77 l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~ 125 (335)
T 2a87_A 77 MREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAA 125 (335)
T ss_dssp HHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCC
Confidence 3344445589999987 999987 666778 78888889999999998753
No 432
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.33 E-value=1.7e-06 Score=96.57 Aligned_cols=55 Identities=16% Similarity=0.055 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEE--eCCeE-EEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQ--YGEGR-IEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~--~~~~~-~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+. +++++ .|++.+|+++.||.||+|++.
T Consensus 191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 46777888888888999999999999987 45565 788889988999999999874
No 433
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.33 E-value=1.5e-07 Score=94.67 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--ccCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC--DYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~--d~~~~~ 692 (864)
-|+.++.++..++++.+|||||||.|+++.+++++ ....|+|+|++..+...+... ...+ .++..... |+..++
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNME 153 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcC
Confidence 46778888888899999999999999999999976 334799999987643222110 0011 13333333 444443
Q ss_pred CCCCccEEEEchhhhhhChhhH-----HHHHHHHHhccccC--cEEEEEEec
Q 002928 693 KSNKYDRIISCEMIEAVGHDYM-----EEFFGCCESLLAEH--GLLLLQFIS 737 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~-----~~~l~~~~~~Lkpg--G~l~i~~~~ 737 (864)
..++|+|+|..+.. .|.... ..+++-+.++|+|| |.|++-.+.
T Consensus 154 -~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 -VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 47899999976554 332211 23477788999999 999996654
No 434
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.33 E-value=1.8e-06 Score=97.84 Aligned_cols=38 Identities=37% Similarity=0.580 Sum_probs=35.9
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
+||+|||||++|++||..|++.|++|+|+|+++.+||.
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~ 44 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 44 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccc
Confidence 58999999999999999999999999999999888884
No 435
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.33 E-value=6e-07 Score=102.01 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCc-----EEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDF-----QRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~-----~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|.+|+..++ .+.|++.++. ++.+|.||+|++.
T Consensus 227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 46778888889999999999999999988654 4667766543 6899999999864
No 436
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.32 E-value=1.6e-06 Score=98.88 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCC-eEEEEECCCcE-EecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGE-GRIEIRGDDFQ-RVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~-~~~V~~~~G~~-~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++ .+.|++.+|++ +.+|.||+|++.
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~ 273 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR 273 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence 46788889999999999999999999987654 47888888877 999999999864
No 437
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.31 E-value=1.6e-06 Score=92.32 Aligned_cols=37 Identities=35% Similarity=0.706 Sum_probs=34.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEE-EecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVL-YEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~v-lEa~~~~GG~ 38 (864)
+||+|||||++||+||+.|+++|++|+| +|+ +.+||.
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~ 42 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQ 42 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGG
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCce
Confidence 4899999999999999999999999999 999 667773
No 438
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.9e-07 Score=98.87 Aligned_cols=40 Identities=35% Similarity=0.573 Sum_probs=36.4
Q ss_pred CcEEEEcCChhHHHHHHHHHh--CCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAK--AGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~--~G~~V~vlEa~~~~GG~~~ 40 (864)
.||+|||||+|||+||++|++ .|++|+|+|+++.+||.+.
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~ 107 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence 389999999999999999975 5999999999999999664
No 439
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.31 E-value=1.3e-06 Score=99.88 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCceEEeCcceEEEEEe---CCeEEEEECCCcEEecCEEEEccChH
Q 002928 218 VDKVIELLESLGCQIKTGCEVRSVLQY---GEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 218 ~~~La~~~~~~G~~I~~~~~V~~I~~~---~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
.+.+.+.+.+.|++++.+++|++|..+ ++.+.|++.+|+++++|.||+|+...
T Consensus 270 ~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~ 325 (521)
T 1hyu_A 270 AGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK 325 (521)
T ss_dssp HHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 334455556679999999999999764 23688999889889999999998864
No 440
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.30 E-value=2.5e-06 Score=91.15 Aligned_cols=121 Identities=13% Similarity=0.164 Sum_probs=94.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCchHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcccCCCC-
Q 002928 620 LLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEMKVKEAGLQ-----DHIRLYLCDYRQLP- 692 (864)
Q Consensus 620 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~-----~~v~~~~~d~~~~~- 692 (864)
.....++++||++|||+.||.|+=+.++++. .+..|+++|+|+.-++..+++++..+.. .++.+...|...++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 3445568899999999999999999999987 3458999999999999999999877653 47899999988876
Q ss_pred -CCCCccEEEEc----h----hhh-------hhCh-------hhHHHHHHHHHhccccCcEEEEEEecCCC
Q 002928 693 -KSNKYDRIISC----E----MIE-------AVGH-------DYMEEFFGCCESLLAEHGLLLLQFISVPD 740 (864)
Q Consensus 693 -~~~~fD~v~s~----~----~~~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 740 (864)
..+.||.|+.. + ++. .... ....++|.+..++|||||+++-.+.+...
T Consensus 219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 45789999963 1 110 0000 11246788999999999999998877554
No 441
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=98.27 E-value=1.1e-06 Score=89.03 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 002928 618 VSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP----- 692 (864)
Q Consensus 618 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (864)
++.+++.+.++++..+||.+||.|+.+..++++ +++|+|+|.++++++.|++ ++. ++++++++|+.+++
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHH
Confidence 467888889999999999999999999999998 8899999999999999998 643 48999999999875
Q ss_pred -CCCCccEEEEchh
Q 002928 693 -KSNKYDRIISCEM 705 (864)
Q Consensus 693 -~~~~fD~v~s~~~ 705 (864)
..+++|.|++...
T Consensus 85 ~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 85 LGVERVDGILADLG 98 (285)
T ss_dssp TTCSCEEEEEEECS
T ss_pred cCCCCcCEEEeCCc
Confidence 2257999998543
No 442
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.26 E-value=1.5e-06 Score=95.41 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=35.4
Q ss_pred hcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 227 SLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 227 ~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.|++++++++|++|+.++. .|++.+|+++.+|+||+|+.+.
T Consensus 74 ~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~ 115 (385)
T 3klj_A 74 KNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSI 115 (385)
T ss_dssp HTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred HCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCC
Confidence 34899999999999987655 5777888899999999998763
No 443
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.24 E-value=3.6e-06 Score=98.32 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhc--CceEEeCcceEEEEEeCC---eE-EEEE---CCCc--EEecCEEEEccChH
Q 002928 216 SYVDKVIELLESL--GCQIKTGCEVRSVLQYGE---GR-IEIR---GDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 216 ~l~~~La~~~~~~--G~~I~~~~~V~~I~~~~~---~~-~V~~---~~G~--~~~ad~VV~A~~~~ 270 (864)
.+...|.+.++++ |++|+.++.|++|..+++ ++ .|.. .+|+ .+.|+.||+||...
T Consensus 167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~ 232 (662)
T 3gyx_A 167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGA 232 (662)
T ss_dssp SHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcc
Confidence 6778888888887 999999999999988776 54 2322 3453 58899999999765
No 444
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=98.24 E-value=3.1e-06 Score=87.20 Aligned_cols=120 Identities=8% Similarity=0.037 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcC-CCCCCeEEEEcCCchHHHHHHHHh------cCCEEEEEeCCHH----------------------
Q 002928 613 AQMRKVSLLIQKAR-VSKGHEVLEIGCGWGTLAIEIVKQ------TGCKYTGITLSEE---------------------- 663 (864)
Q Consensus 613 aq~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~------~~~~v~gid~s~~---------------------- 663 (864)
.+...+..+++.+. .....+|||+||..|..++.+++. ++.+|+++|..+.
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 34455566666553 233459999999999999998764 2679999996421
Q ss_pred ----HHHHHHHHHHHcCCC-CCeEEEEcccCC-CC--CCCCccEEEEchhhhhhChhhHHHHHHHHHhccccCcEEEEEE
Q 002928 664 ----QLKYAEMKVKEAGLQ-DHIRLYLCDYRQ-LP--KSNKYDRIISCEMIEAVGHDYMEEFFGCCESLLAEHGLLLLQF 735 (864)
Q Consensus 664 ----~~~~a~~~~~~~~l~-~~v~~~~~d~~~-~~--~~~~fD~v~s~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 735 (864)
.++.+++++++.|+. ++|+++.+|+.+ ++ ++++||+|..-.-.. +....+|+.+...|+|||.+++.+
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 467789999999984 899999999865 44 357899999875321 234688999999999999999966
Q ss_pred e
Q 002928 736 I 736 (864)
Q Consensus 736 ~ 736 (864)
+
T Consensus 245 ~ 245 (282)
T 2wk1_A 245 Y 245 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 445
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.23 E-value=1.9e-06 Score=97.72 Aligned_cols=38 Identities=34% Similarity=0.659 Sum_probs=35.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
+||+|||||++|++||+.|++.|++|+|+|+++.+||.
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~ 44 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 48999999999999999999999999999998888873
No 446
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.22 E-value=1.4e-06 Score=99.50 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccC
Q 002928 214 SRSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVH 268 (864)
Q Consensus 214 ~~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~ 268 (864)
-..+++.+.+.+++.|+++++++.|.+++..++++.|.+.+++++.+|.|++|+.
T Consensus 262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred chhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 4578899999999999999999999999999999999999988899999999975
No 447
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.18 E-value=6.8e-06 Score=94.62 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhc----CCEEEEEeCCHHHHHHHHHHH--HH----cCCCCCeEEEEcccCCCC--CCC
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQT----GCKYTGITLSEEQLKYAEMKV--KE----AGLQDHIRLYLCDYRQLP--KSN 695 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~----~~~v~gid~s~~~~~~a~~~~--~~----~~l~~~v~~~~~d~~~~~--~~~ 695 (864)
+++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.|+.+. .. .+.. ...+...|+.+.. ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~-~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN-APTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB-CCEEECCCGGGCCGGGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC-cceEEecchhcccccccC
Confidence 468899999999999999999873 257999999999999994433 22 2221 2356666666643 457
Q ss_pred CccEEEEchhhhh-hC--h------------------------hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 696 KYDRIISCEMIEA-VG--H------------------------DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 696 ~fD~v~s~~~~~~-~~--~------------------------~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+||+|+++-.+.. .. . .-...+++.+.++|+|||++.+...
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8999999876521 00 0 0134578899999999999988554
No 448
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.14 E-value=7.1e-06 Score=96.50 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=44.5
Q ss_pred cEEEEcCChhHHHHHHHHHh-----CCCeEEEEecCCCCCCcceeEeeCCeeeccceeeccCCCchHHHHHHHHcCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAK-----AGVEVVLYEKEDSLGGHAKTVTIDGVDLDLCFMVFNRVTYPNMMEFFESLGVDME 76 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~-----~G~~V~vlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lG~~~~ 76 (864)
||+|||||++||++|+.|++ .|++|+|+|+.+.+.. .|. +..+ .+...++++++|+...
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~-------~gr-----a~~l----~~~tle~l~~lGl~~~ 73 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY-------NGQ-----ADGL----QCRTLESLKNLGLADK 73 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC-------SCS-----CCEE----CHHHHHHHHTTTCHHH
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCC-------CCc-----eeEE----ChHHHHHHHHCCCHHH
Confidence 79999999999999999999 9999999999764321 010 1111 4567788898887543
No 449
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.13 E-value=8.2e-06 Score=91.68 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++. +++++++.|.+|+.++ ++.+...+|+++.||.||+|++.
T Consensus 190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGI 242 (449)
T ss_dssp HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCE
T ss_pred HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCC
Confidence 46778888888888 9999999999997654 55333456778999999999864
No 450
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.13 E-value=4.3e-06 Score=75.08 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC--CCccEEEEch
Q 002928 628 SKGHEVLEIGCGWG-TLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLPKS--NKYDRIISCE 704 (864)
Q Consensus 628 ~~~~~vLDiGcG~G-~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--~~fD~v~s~~ 704 (864)
.++.+|||||||.| ..+..|+++.|..|+++|+++..++ +++.|+.+...+ +.||+|.++.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEEEcC
Confidence 45679999999999 7999999855999999999986555 788888774421 4899998875
Q ss_pred hhhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 705 MIEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
. +.++...+-++.+. =|.-++|....
T Consensus 98 P-----P~El~~~i~~lA~~--v~adliI~pL~ 123 (153)
T 2k4m_A 98 P-----PAEIHSSLMRVADA--VGARLIIKPLT 123 (153)
T ss_dssp C-----CTTTHHHHHHHHHH--HTCEEEEECBT
T ss_pred C-----CHHHHHHHHHHHHH--cCCCEEEEcCC
Confidence 3 23345555555543 35677776554
No 451
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.12 E-value=4.3e-06 Score=93.95 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSLG 36 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~G 36 (864)
|||+|||||++|++||..|++. |++|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 7999999999999999999998 99999999987643
No 452
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.09 E-value=2.4e-06 Score=94.64 Aligned_cols=49 Identities=8% Similarity=-0.277 Sum_probs=41.8
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
+.+.+++.|++|++++.|..++.+++...|.+.+|+++.||.|+++++.
T Consensus 208 ~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~ 256 (401)
T 3vrd_B 208 YGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQ 256 (401)
T ss_dssp SCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCc
Confidence 3344567799999999999999888888899999999999999998754
No 453
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.09 E-value=2.7e-05 Score=85.41 Aligned_cols=50 Identities=28% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
+.+.+++.|++|+++++|++|+.+++++.|++.+|++++||.||+|++..
T Consensus 193 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 193 VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR 242 (384)
T ss_dssp HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC
Confidence 45555667999999999999998888888999999889999999998643
No 454
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=98.09 E-value=4.4e-06 Score=83.69 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC-DYRQLP 692 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~ 692 (864)
..|+..+.++..++++.+||||||++|+++.+++...++ +|.|+|+...-.+.-+ ..++.+.. .|.+..+ |+..++
T Consensus 80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~-lV~~~~~~Dv~~l~ 157 (321)
T 3lkz_A 80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN-IVTMKSGVDVFYRP 157 (321)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG-GEEEECSCCTTSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc-ceEEEeccCHhhCC
Confidence 356778888878899999999999999999999988665 5999999875111000 00111221 4888887 988887
Q ss_pred CCCCccEEEEchhhhhhChhh-----HHHHHHHHHhccccC-cEEEEEEecC
Q 002928 693 KSNKYDRIISCEMIEAVGHDY-----MEEFFGCCESLLAEH-GLLLLQFISV 738 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~-----~~~~l~~~~~~Lkpg-G~l~i~~~~~ 738 (864)
+ .++|.|+|.-. +.-|... --.+|+-+.+.|++| |-+++-.+..
T Consensus 158 ~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 158 S-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp C-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred C-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 5 66999998644 4333211 123677778999999 8888855443
No 455
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.07 E-value=6.4e-06 Score=93.38 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=35.1
Q ss_pred CceEEeCcceEEEEEeCCeEEEEE-CCCc--EEecCEEEEccChH
Q 002928 229 GCQIKTGCEVRSVLQYGEGRIEIR-GDDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 229 G~~I~~~~~V~~I~~~~~~~~V~~-~~G~--~~~ad~VV~A~~~~ 270 (864)
|++++++++|+.|+.+++.+.+.. .+|+ ++++|+||+|+...
T Consensus 107 gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~ 151 (480)
T 3cgb_A 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVR 151 (480)
T ss_dssp CCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred CCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCc
Confidence 889999999999988777787766 4565 69999999998754
No 456
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=98.06 E-value=4.3e-06 Score=88.80 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc---CC----CCCeEEEEcccCCCC-----CCC
Q 002928 628 SKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEA---GL----QDHIRLYLCDYRQLP-----KSN 695 (864)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~---~l----~~~v~~~~~d~~~~~-----~~~ 695 (864)
.+..+||=||.|.|..+..+.+.+..+|+.|||+++.++.+++.+... .+ .++++++.+|..+.- ..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 456899999999999999999886689999999999999999875321 11 246899999976532 346
Q ss_pred CccEEEEchhh-------hhhCh-hhHHHHHHHHHhccccCcEEEEEEe
Q 002928 696 KYDRIISCEMI-------EAVGH-DYMEEFFGCCESLLAEHGLLLLQFI 736 (864)
Q Consensus 696 ~fD~v~s~~~~-------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 736 (864)
+||+|+.-..- ..... ..-..+++.++++|+|||.++.+.-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 89999976211 11111 1346889999999999999998753
No 457
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.05 E-value=2.4e-06 Score=90.93 Aligned_cols=37 Identities=30% Similarity=0.544 Sum_probs=33.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||||+|||+||++|++.|++|+|+|+. .+||.+
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~ 44 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQM 44 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCee
Confidence 8999999999999999999999999999985 577754
No 458
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=98.00 E-value=3.9e-06 Score=91.47 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=32.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLG 36 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~G 36 (864)
+||+|||||++|+++|++|+++|++|+|+|+....+
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~ 42 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPED 42 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCC
Confidence 389999999999999999999999999999977433
No 459
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=98.00 E-value=4.2e-05 Score=74.02 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC-DYRQLPK 693 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~~ 693 (864)
.|+..+.++..++++++|||+||+.|+++.+++.+.++ +|.|+|+-..-.+.-+ ..+..|+. .|+|..+ |+..+++
T Consensus 65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCGGGCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccceeecCC
Confidence 56778888888899999999999999999999988554 6999999864331100 01223443 7999999 9877765
Q ss_pred CCCccEEEEchh-------hhhhChhhHHHHHHHHHhccccCcEEEEEEec
Q 002928 694 SNKYDRIISCEM-------IEAVGHDYMEEFFGCCESLLAEHGLLLLQFIS 737 (864)
Q Consensus 694 ~~~fD~v~s~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 737 (864)
.++|.|+|.-. +++. .--.+|+-+.+.|++ |.+++-.+.
T Consensus 143 -~~~DtllcDIgeSs~~~~vE~~---RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 143 -EKCDTLLCDIGESSPSPTVEES---RTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHH---HHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred -ccccEEEEecCCCCCChhhhhh---HHHHHHHHHHHhccc-CCEEEEEcc
Confidence 67999999531 2222 112367777899999 788885544
No 460
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.99 E-value=5.8e-06 Score=92.53 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=31.2
Q ss_pred CcEEEEcCChhHHHHHHHHHh---CCCeEEEEecCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAK---AGVEVVLYEKED 33 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~---~G~~V~vlEa~~ 33 (864)
+||+|||||++||+||.+|++ .|++|+|+|+++
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~ 40 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND 40 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence 589999999999999999999 899999999876
No 461
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=97.99 E-value=1.3e-05 Score=91.14 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=28.5
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||||||||++||++|+.|.++|...+++|+.+..|+
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~ 76 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ 76 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence 899999999999999999998877777777666555
No 462
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.98 E-value=6.4e-06 Score=93.62 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=32.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCC---CeEEEEecCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAG---VEVVLYEKEDSLG 36 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G---~~V~vlEa~~~~G 36 (864)
+||+|||||++|++||..|++.| .+|+|+|+++.+|
T Consensus 36 ~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~ 74 (490)
T 2bc0_A 36 SKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS 74 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 48999999999999999999988 9999999987643
No 463
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=97.97 E-value=3.7e-06 Score=89.52 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.3
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~ 34 (864)
||+|||||+|||+||++|+++|++|+|+|+...
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~ 38 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA 38 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 899999999999999999999999999999653
No 464
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.95 E-value=5e-05 Score=85.56 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC-C--Cc--EEecCEEEEccCh
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG-D--DF--QRVYDGCIMAVHA 269 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~-~--G~--~~~ad~VV~A~~~ 269 (864)
+.+.+++.|++|+++++|++|+.+++++.|++. + |+ ++.+|.||+|+..
T Consensus 216 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~ 269 (464)
T 2eq6_A 216 LRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269 (464)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred HHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence 344455669999999999999988877877775 6 76 7999999999864
No 465
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.94 E-value=4.5e-06 Score=93.53 Aligned_cols=39 Identities=38% Similarity=0.643 Sum_probs=36.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++||+||++|+++|++|+|+|+++.+||..
T Consensus 123 ~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l 161 (456)
T 2vdc_G 123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL 161 (456)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence 589999999999999999999999999999999999854
No 466
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.93 E-value=7.6e-06 Score=82.85 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--ccCCCC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLC--DYRQLP 692 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~--d~~~~~ 692 (864)
-|+..+.++--++++.+|||+||++|+++..++++.+ ..|+|+|++..+...... ....+ .++..... |+..++
T Consensus 68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~--~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG--WNIVKFKDKSNVFTMP 144 (300)
T ss_dssp HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSCCTTTSC
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC--CceEEeecCceeeecC
Confidence 4566777772257899999999999999999998633 479999997543111000 00001 12332332 333443
Q ss_pred CCCCccEEEEchhhhhhChhhH-----HHHHHHHHhccccC-cEEEEEEec
Q 002928 693 KSNKYDRIISCEMIEAVGHDYM-----EEFFGCCESLLAEH-GLLLLQFIS 737 (864)
Q Consensus 693 ~~~~fD~v~s~~~~~~~~~~~~-----~~~l~~~~~~Lkpg-G~l~i~~~~ 737 (864)
.+.+|+|+|..+-. .|.... ..+++-+.++|+|| |.|++-.+.
T Consensus 145 -~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 145 -TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp -CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred -CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 46899999975544 333222 23477788999999 999997654
No 467
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.93 E-value=1.9e-05 Score=83.43 Aligned_cols=87 Identities=8% Similarity=0.066 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEchh
Q 002928 627 VSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAGLQDHIRLYLCDYRQLP-KSNKYDRIISCEM 705 (864)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~v~s~~~ 705 (864)
+++|++|||+||..|+++..++++ +++|++||+.+ |-.. +.. .++|+++++|..... ..++||.|+|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~~----l~~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQS----LMD---TGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCHH----HHT---TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cChh----hcc---CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 579999999999999999999998 89999999874 2111 121 138999999988876 5578999999654
Q ss_pred hhhhChhhHHHHHHHHHhccccC
Q 002928 706 IEAVGHDYMEEFFGCCESLLAEH 728 (864)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~Lkpg 728 (864)
. ++....+-+.+.|..+
T Consensus 280 ~------~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 E------KPAKVAALMAQWLVNG 296 (375)
T ss_dssp S------CHHHHHHHHHHHHHTT
T ss_pred C------ChHHhHHHHHHHHhcc
Confidence 3 3345555565655554
No 468
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.92 E-value=5.6e-05 Score=85.83 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHh--------------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 002928 615 MRKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQ--------------TGCKYTGITLSEEQLKYAEMKVKEAGLQDH 680 (864)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~ 680 (864)
+..++.|++.+...++.+|+|-.||+|++...+.+. ....++|+|+++.+...|+-++--.|.. .
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~ 281 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-Y 281 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-c
Confidence 466778888888899999999999999999877653 1246999999999999999888777764 4
Q ss_pred eEEEEcccCCCC-----CCCCccEEEEchhhhhh-------------Ch-hhHHHHHHHHHhccc-------cCcEEEEE
Q 002928 681 IRLYLCDYRQLP-----KSNKYDRIISCEMIEAV-------------GH-DYMEEFFGCCESLLA-------EHGLLLLQ 734 (864)
Q Consensus 681 v~~~~~d~~~~~-----~~~~fD~v~s~~~~~~~-------------~~-~~~~~~l~~~~~~Lk-------pgG~l~i~ 734 (864)
..+..+|....+ ...+||+|+++..+.-- +. +.-..+++.+.+.|| |||++.+.
T Consensus 282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 577888876544 23579999999766311 10 112345777887776 79999885
Q ss_pred Ee
Q 002928 735 FI 736 (864)
Q Consensus 735 ~~ 736 (864)
.+
T Consensus 362 lP 363 (530)
T 3ufb_A 362 VP 363 (530)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 469
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.88 E-value=2.9e-05 Score=76.67 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC---CCe---EEEEc-c
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEMKVKEAGLQ---DHI---RLYLC-D 687 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~---~~v---~~~~~-d 687 (864)
-|+..|-++.-++|+++|||+||+.|+++.+++++.+. .|.|.++.... . ...+. ..+ .|.++ |
T Consensus 60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~D 131 (269)
T 2px2_A 60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVD 131 (269)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCC
T ss_pred HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCC
Confidence 45667777765799999999999999999999987322 44555554321 0 00111 133 55557 9
Q ss_pred cCCCCCCCCccEEEEchh-------hhhhChhhHHHHHHHHHhccccCc-EEEEEEec
Q 002928 688 YRQLPKSNKYDRIISCEM-------IEAVGHDYMEEFFGCCESLLAEHG-LLLLQFIS 737 (864)
Q Consensus 688 ~~~~~~~~~fD~v~s~~~-------~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~ 737 (864)
+.+++ ..++|+|+|-.. +.|. .... ++.-+.++|+||| .|++-.+.
T Consensus 132 f~~~~-~~~~DvVLSDMAPnSG~~~vD~~--Rs~~-aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 132 VFYKP-SEISDTLLCDIGESSPSAEIEEQ--RTLR-ILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGGSC-CCCCSEEEECCCCCCSCHHHHHH--HHHH-HHHHHHHHHTTCCSEEEEEESC
T ss_pred ccCCC-CCCCCEEEeCCCCCCCccHHHHH--HHHH-HHHHHHHHhhcCCcEEEEEECC
Confidence 98865 357999999642 2332 1222 6777889999999 89886655
No 470
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.87 E-value=9.5e-06 Score=89.03 Aligned_cols=35 Identities=40% Similarity=0.460 Sum_probs=33.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhC--CCeEEEEecCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKA--GVEVVLYEKEDSL 35 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~--G~~V~vlEa~~~~ 35 (864)
|||+|||||++||++|+.|+++ |++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 7999999999999999999999 9999999998776
No 471
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.79 E-value=8.6e-06 Score=91.93 Aligned_cols=38 Identities=37% Similarity=0.589 Sum_probs=35.9
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
||+|||||++||+||..|++.|++|+|+|+++.+||.+
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~ 43 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNC 43 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcc
Confidence 89999999999999999999999999999989999854
No 472
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.78 E-value=1.1e-05 Score=95.49 Aligned_cols=40 Identities=43% Similarity=0.607 Sum_probs=37.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
+||+|||||++||+||+.|+++|++|+|+|+++.+||...
T Consensus 392 ~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~ 431 (690)
T 3k30_A 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT 431 (690)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEee
Confidence 5899999999999999999999999999999999999654
No 473
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.75 E-value=0.00013 Score=81.71 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~ 35 (864)
++|+|||||++|+.+|..|++.|.+|+|+|+.+++
T Consensus 150 ~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 57999999999999999999999999999987653
No 474
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.75 E-value=0.00013 Score=81.98 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=38.4
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC---CCcEEecCEEEEccCh
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG---DDFQRVYDGCIMAVHA 269 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~---~G~~~~ad~VV~A~~~ 269 (864)
+.+.+++.|++|+++++|++|+.+++++.|++. +++++++|.||+|++.
T Consensus 217 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 268 (455)
T 1ebd_A 217 IKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR 268 (455)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence 334455669999999999999988777777654 4457999999999864
No 475
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.74 E-value=1.4e-05 Score=89.04 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=31.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKED 33 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~ 33 (864)
+||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 489999999999999999999999999999976
No 476
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.72 E-value=0.00013 Score=82.60 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=32.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSL 35 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~ 35 (864)
++|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 218 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 218 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence 47999999999999999999999999999987653
No 477
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.72 E-value=2.5e-05 Score=83.07 Aligned_cols=39 Identities=33% Similarity=0.493 Sum_probs=35.0
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++|+.||+.|+++|++|+|+|+++..+.-+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~ 40 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA 40 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence 699999999999999999999999999999987655543
No 478
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.71 E-value=2e-05 Score=93.92 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=37.6
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~~ 40 (864)
+||+|||||++||+||+.|+++|++|+|+|+++.+||...
T Consensus 390 ~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~ 429 (729)
T 1o94_A 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN 429 (729)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeee
Confidence 5899999999999999999999999999999999999654
No 479
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.71 E-value=1.3e-05 Score=90.74 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=36.1
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++|++||+.|++.|++|+|+|+++.+||.+
T Consensus 6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~ 44 (478)
T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC 44 (478)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence 389999999999999999999999999999988888844
No 480
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.70 E-value=0.00015 Score=80.91 Aligned_cols=34 Identities=18% Similarity=0.476 Sum_probs=30.7
Q ss_pred cEEEEcCChhHHHHHHHHHhCC--CeEEEEecCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAG--VEVVLYEKEDSL 35 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G--~~V~vlEa~~~~ 35 (864)
+|+|||||++|++||..|++.| .+|+|+|+++..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~ 37 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 37 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 6999999999999999999988 579999997653
No 481
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.70 E-value=1.4e-05 Score=90.47 Aligned_cols=39 Identities=38% Similarity=0.595 Sum_probs=36.3
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~ 45 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC 45 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcc
Confidence 489999999999999999999999999999998898854
No 482
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.68 E-value=0.00031 Score=77.60 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccCh
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~ 269 (864)
+.+.+++.|++|+++++|++|+ ++ .|++.+|+++.||.||+|++.
T Consensus 193 l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 193 VARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGV 237 (408)
T ss_dssp HHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCE
T ss_pred HHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCC
Confidence 4445556699999999999998 34 677788889999999999864
No 483
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.68 E-value=0.00011 Score=77.20 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 002928 616 RKVSLLIQKARVSKGHEVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEMKVKEAG 676 (864)
Q Consensus 616 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~ 676 (864)
..++.+++... .+|+.|||++||+|..+..+++. |.+++|+|+++++++.|+++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 55667777766 68999999999999999998886 8999999999999999999987653
No 484
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.68 E-value=0.00021 Score=80.75 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCe-EEEEE-----CCCcEEecCEEEEccCh
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEG-RIEIR-----GDDFQRVYDGCIMAVHA 269 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~-~~V~~-----~~G~~~~ad~VV~A~~~ 269 (864)
+.+.+++.|++|+++++|++|+.++++ +.|++ .+++++.+|.||+|++.
T Consensus 226 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~ 280 (474)
T 1zmd_A 226 FQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280 (474)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred HHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence 444555669999999999999887766 76663 46668999999999864
No 485
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.67 E-value=2e-05 Score=89.32 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCe--EEEEECC---C----cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEG--RIEIRGD---D----FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~--~~V~~~~---G----~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|+++++|++|+..+++ +.|.+.+ | +++.+|.||+|++.
T Consensus 228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 467778888888889999999999999876554 6677764 2 56889999999864
No 486
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.66 E-value=2.3e-05 Score=89.01 Aligned_cols=54 Identities=7% Similarity=-0.034 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEEC--CC--cEEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRG--DD--FQRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~--~G--~~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++. ++|+++++|.+|+.+++++.|++. +| +++.+|.||+|++.
T Consensus 215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~ 272 (492)
T 3ic9_A 215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR 272 (492)
T ss_dssp HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC
T ss_pred HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC
Confidence 46788888888877 999999999999988888877774 67 57999999999864
No 487
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.65 E-value=2.2e-05 Score=88.64 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeCCeEEEEECCCcEEecCEEEEccChH
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGDDFQRVYDGCIMAVHAP 270 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~G~~~~ad~VV~A~~~~ 270 (864)
..+.+.+.+.+++.|++|+++++|++|+.+++.+.|.+.+ +++++|.||+|++..
T Consensus 216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGRT 270 (467)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCCC
Confidence 4678888899999999999999999998877777787764 489999999998653
No 488
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.62 E-value=0.00017 Score=81.60 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=40.8
Q ss_pred HHHHHhhcCceEEeCcceEEEEEeCCeEEEEECC----CcEEecCEEEEccChH
Q 002928 221 VIELLESLGCQIKTGCEVRSVLQYGEGRIEIRGD----DFQRVYDGCIMAVHAP 270 (864)
Q Consensus 221 La~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~~----G~~~~ad~VV~A~~~~ 270 (864)
+.+.+++.|++|+++++|.+|+.+++++.|++.+ |+++.+|.||+|++..
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~ 285 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA 285 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence 4455666799999999999999887777777766 6679999999998643
No 489
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.61 E-value=2.7e-05 Score=87.58 Aligned_cols=37 Identities=38% Similarity=0.568 Sum_probs=34.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~ 38 (864)
+||+|||||++|++||..|++.|++|+|+|++ .+||.
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~ 40 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGV 40 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCc
Confidence 58999999999999999999999999999997 67773
No 490
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.61 E-value=3.1e-05 Score=87.95 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCceEEeCcceEEEEEeC-CeEEEEECC---Cc--EEecCEEEEccCh
Q 002928 215 RSYVDKVIELLESLGCQIKTGCEVRSVLQYG-EGRIEIRGD---DF--QRVYDGCIMAVHA 269 (864)
Q Consensus 215 ~~l~~~La~~~~~~G~~I~~~~~V~~I~~~~-~~~~V~~~~---G~--~~~ad~VV~A~~~ 269 (864)
..+.+.+.+.+++.|++|++++.|.+|+..+ +.+.|++.+ |+ ++.+|.||+|++.
T Consensus 225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 4677888888888899999999999997743 445565543 54 4689999999863
No 491
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.60 E-value=2.3e-05 Score=88.16 Aligned_cols=38 Identities=37% Similarity=0.608 Sum_probs=35.2
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++|++||.+|++.|++|+|+|+ +.+||.+
T Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~ 43 (458)
T 1lvl_A 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTC 43 (458)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcC
Confidence 5899999999999999999999999999999 6788854
No 492
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.59 E-value=3.4e-05 Score=88.17 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=30.8
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKED 33 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~ 33 (864)
||+|||||++||+||..|++.|++|+|+|+++
T Consensus 34 DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~ 65 (519)
T 3qfa_A 34 DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT 65 (519)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 89999999999999999999999999999865
No 493
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.58 E-value=2.5e-05 Score=88.10 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=34.4
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++|++||+.|++.|++|+|+|++ .+||.+
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~ 41 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC 41 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence 38999999999999999999999999999997 677643
No 494
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.57 E-value=4.5e-05 Score=90.15 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=36.8
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus 374 ~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~ 412 (671)
T 1ps9_A 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 412 (671)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCee
Confidence 589999999999999999999999999999999999864
No 495
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.54 E-value=0.0004 Score=78.17 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHHHhhcCceEEeCcceEEEEEeCCeEEEEEC-CC--cEEecCEEEEccCh
Q 002928 222 IELLESLGCQIKTGCEVRSVLQYGEGRIEIRG-DD--FQRVYDGCIMAVHA 269 (864)
Q Consensus 222 a~~~~~~G~~I~~~~~V~~I~~~~~~~~V~~~-~G--~~~~ad~VV~A~~~ 269 (864)
.+.+++.|++|+++++|++|+.+++++.|++. +| +++.+|.||+|++.
T Consensus 219 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 269 (464)
T 2a8x_A 219 EKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF 269 (464)
T ss_dssp HHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred HHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence 33444559999999999999887767777764 56 57999999999864
No 496
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.54 E-value=0.00018 Score=80.80 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDS 34 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~ 34 (864)
++|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 205 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 205 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence 4799999999999999999999999999998765
No 497
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.54 E-value=4.9e-05 Score=93.90 Aligned_cols=39 Identities=28% Similarity=0.632 Sum_probs=36.5
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCC-eEEEEecCCCCCCcc
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGV-EVVLYEKEDSLGGHA 39 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~-~V~vlEa~~~~GG~~ 39 (864)
+||+|||||++||+||++|+++|+ +|+|+|+++.+||..
T Consensus 188 ~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence 589999999999999999999999 799999999999953
No 498
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=97.52 E-value=5.5e-05 Score=88.09 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=34.7
Q ss_pred cEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 2 RAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 2 dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
||+|||||++|++||+.|+++|++|+|+|+.+..||
T Consensus 48 dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg 83 (623)
T 3pl8_A 48 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG 83 (623)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999998887
No 499
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.52 E-value=3.5e-05 Score=86.79 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=33.7
Q ss_pred CcEEEEcCChhHHHHHHHHHhCCCeEEEEecCCCCCC
Q 002928 1 MRAAVIGGGISGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (864)
Q Consensus 1 ~dV~IIGaGiaGLsaA~~La~~G~~V~vlEa~~~~GG 37 (864)
+||+|||||++|++||..|++.|++|+|+|+++ +||
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG 42 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGG 42 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCC
Confidence 379999999999999999999999999999987 776
No 500
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.50 E-value=0.00091 Score=75.19 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=36.7
Q ss_pred cCceEEeCcceEEEEEeCCeEEEEEC---CCc--EEecCEEEEccChH
Q 002928 228 LGCQIKTGCEVRSVLQYGEGRIEIRG---DDF--QRVYDGCIMAVHAP 270 (864)
Q Consensus 228 ~G~~I~~~~~V~~I~~~~~~~~V~~~---~G~--~~~ad~VV~A~~~~ 270 (864)
.|++|+++++|++|+.+++++.|++. +|+ ++.+|.||+|+...
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~ 376 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYE 376 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence 58999999999999998888888876 665 38999999998753
Done!