Your job contains 1 sequence.
>002929
MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK
IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQP
GSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERV
MAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR
PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPA
SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLL
LPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHL
SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP
KGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV
VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR
MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGV
TLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEA
KEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSA
MELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDA
EVLSEDTHPLFRRAVYSGLHRPIN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002929
(864 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2054137 - symbol:ABH1 "ABA HYPERSENSITIVE 1" s... 2986 2.8e-311 1
UNIPROTKB|F1ST49 - symbol:NCBP1 "Uncharacterized protein"... 615 3.3e-63 2
DICTYBASE|DDB_G0269814 - symbol:ncbp1 "nuclear cap-bindin... 260 1.3e-59 3
UNIPROTKB|Q6DIE2 - symbol:ncbp1 "Nuclear cap-binding prot... 567 5.9e-56 2
UNIPROTKB|Q4R440 - symbol:Q4R440 "Testis cDNA clone: QtsA... 532 1.2e-53 2
FB|FBgn0022942 - symbol:Cbp80 "cap binding protein 80" sp... 546 1.7e-51 2
UNIPROTKB|Q09161 - symbol:NCBP1 "Nuclear cap-binding prot... 532 5.3e-50 2
UNIPROTKB|F1PUP7 - symbol:NCBP1 "Uncharacterized protein"... 527 2.5e-49 2
UNIPROTKB|Q5ZJZ6 - symbol:NCBP1 "Nuclear cap-binding prot... 528 5.4e-49 2
UNIPROTKB|E1BMM0 - symbol:NCBP1 "Uncharacterized protein"... 524 6.3e-49 2
RGD|1308973 - symbol:Ncbp1 "nuclear cap binding protein s... 523 8.7e-49 2
MGI|MGI:1891840 - symbol:Ncbp1 "nuclear cap binding prote... 521 1.5e-48 2
UNIPROTKB|F1P0M6 - symbol:NCBP1 "Nuclear cap-binding prot... 513 5.0e-47 2
FB|FBgn0038887 - symbol:CG7907 species:7227 "Drosophila m... 471 1.6e-41 2
WB|WBGene00018156 - symbol:ncbp-1 species:6239 "Caenorhab... 419 4.7e-35 2
ASPGD|ASPL0000002953 - symbol:AN6507 species:162425 "Emer... 391 6.9e-33 1
UNIPROTKB|A6QNR9 - symbol:LOC100124428 "Uncharacterized p... 311 9.5e-27 1
POMBASE|SPAC6G10.07 - symbol:SPAC6G10.07 "nuclear cap-bin... 337 6.0e-26 2
UNIPROTKB|G4NH07 - symbol:MGG_12123 "Cap binding protein"... 325 1.1e-25 1
CGD|CAL0004925 - symbol:GCR3 species:5476 "Candida albica... 167 3.4e-13 3
UNIPROTKB|Q59QD1 - symbol:GCR3 "Likely nuclear cap-bindin... 167 3.4e-13 3
SGD|S000004732 - symbol:STO1 "Large subunit of the nuclea... 148 7.6e-12 4
>TAIR|locus:2054137 [details] [associations]
symbol:ABH1 "ABA HYPERSENSITIVE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006412 "translation" evidence=ISS] [GO:0009887 "organ
morphogenesis" evidence=NAS] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IDA]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
[GO:0048574 "long-day photoperiodism, flowering" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0009737 GO:GO:0005634 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF48371
GO:GO:0003677 EMBL:AC007063 GO:GO:0048574 Gene3D:1.25.40.180
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 EMBL:AF272891
EMBL:AF268377 EMBL:AY064960 EMBL:BT000650 IPI:IPI00524102
PIR:C84508 RefSeq:NP_565356.1 UniGene:At.25306 HSSP:Q09161
ProteinModelPortal:Q9SIU2 SMR:Q9SIU2 IntAct:Q9SIU2 STRING:Q9SIU2
PaxDb:Q9SIU2 PRIDE:Q9SIU2 EnsemblPlants:AT2G13540.1 GeneID:815840
KEGG:ath:AT2G13540 TAIR:At2g13540 eggNOG:NOG303489
HOGENOM:HOG000029533 InParanoid:Q9SIU2 KO:K12882 OMA:LICRVGE
PhylomeDB:Q9SIU2 ProtClustDB:CLSN2688086 Genevestigator:Q9SIU2
GO:GO:0000394 PANTHER:PTHR12412 Uniprot:Q9SIU2
Length = 848
Score = 2986 (1056.2 bits), Expect = 2.8e-311, P = 2.8e-311
Identities = 563/865 (65%), Positives = 680/865 (78%)
Query: 1 MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK 60
MS+WK LLL+IG+ PEYG S D KDHIETCFGVIRRE+E S D V +++ CAEQ+PHK
Sbjct: 1 MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHK 60
Query: 61 IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQP 120
IPLYGTL+GLLNLENEDFV+K+VE+ FQ ALDSGNC+ IRIL+RF+T ++CSK++QP
Sbjct: 61 IPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP 120
Query: 121 GSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERV 180
SL+VVFETLLSSAATTVDE+KGNPSWQ +ADFYV CILS LPWGG+EL EQVP+EIERV
Sbjct: 121 ASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERV 180
Query: 181 MAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR 240
+ G++AYLSIR+++S +GL+FF + E L EKDF+EDL R+Q+L+SNGWKL+SVPR
Sbjct: 181 LVGIQAYLSIRKNSSTSGLNFFH-NGEFESSLAEKDFVEDLLDRIQSLASNGWKLESVPR 239
Query: 241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPA 300
PHLSFEAQLV+GK HE PI C EQP P+ S GKQKHDA +YPQRIRRLNIFPA
Sbjct: 240 PHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDALTRYPQRIRRLNIFPA 299
Query: 301 SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSXXXX 360
+K E D+QPIDRF++EEYLLDVL + NGCRKECA YM NLPV FRYEYLMAET+FS
Sbjct: 300 NKME-DVQPIDRFVVEEYLLDVLFYLNGCRKECASYMANLPVTFRYEYLMAETLFSQILL 358
Query: 361 XXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHL 420
FK +YYTLVIMDLCK LF+KI+DLDME R R ILWFSHHL
Sbjct: 359 LPQPPFKTLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKISDLDMESRTRLILWFSHHL 418
Query: 421 SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP 480
SNFQFIWPWEEWA+VLDLPKWAP+RVFVQE+L+REVRLSYWDK+KQSIENA ALEELLPP
Sbjct: 419 SNFQFIWPWEEWAFVLDLPKWAPKRVFVQEILQREVRLSYWDKIKQSIENATALEELLPP 478
Query: 481 KGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV 540
K GPNF YS+E+G+E++EE LSAEL+ KVK +QTAR++IVW+EE++YP+HG VT+ +V
Sbjct: 479 KAGPNFMYSLEEGKEKTEEQQLSAELSRKVKEKQTARDMIVWIEETIYPVHGFEVTLTIV 538
Query: 541 VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR 600
VQTLLDIGSKSFTHL+TVLERYGQV SK+CPD+DKQ+ML+ +VS +WKNN Q A++IDR
Sbjct: 539 VQTLLDIGSKSFTHLVTVLERYGQVFSKLCPDNDKQVMLLSQVSTYWKNNVQMTAVAIDR 598
Query: 601 MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGV 660
MMGYRL+SN AIVRWVFSPEN+DQFH SD+PWE+L NA++KTYNRI DLRK+I ++ K V
Sbjct: 599 MMGYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDLRKDISNITKNV 658
Query: 661 TXXXXXXXXXXXXXXXXXXXXXXVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEA 720
V+GEPVLG NPA++ RLK EK E+S +ESLEA
Sbjct: 659 LVAEKASANARVELEAAESKLSLVEGEPVLGENPAKMKRLKSTVEKTGEAELSLRESLEA 718
Query: 721 KEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSA 780
KEAL RA+ E E L L L+++F VL ERLPD ++ ++QDLKS A+ D ++PSA
Sbjct: 719 KEALLNRALSETEVLLLLLFQSFLGVLKERLPDPTKVRSVQDLKSIGAE----D-DKPSA 773
Query: 781 MELDNENGRPKKSQXXXXXXXXVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDA 840
M++D+ENG PKKS +GE+EQWCLSTLGY+ AF+RQYASEIWPHMEKL++
Sbjct: 774 MDVDSENGNPKKS----------CEVGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLES 823
Query: 841 EVLS-EDTHPLFRRAVYSGLHRPIN 864
EV S ED HPLF +A+ S L P++
Sbjct: 824 EVFSGEDVHPLFLQAISSALQFPLH 848
>UNIPROTKB|F1ST49 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005845 "mRNA cap binding complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000339 "RNA cap binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0006446 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:CU915414
EMBL:AEMK01194579 Ensembl:ENSSSCT00000005906 Uniprot:F1ST49
Length = 729
Score = 615 (221.5 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 177/625 (28%), Positives = 301/625 (48%)
Query: 54 AEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM 113
A +P K+ +Y TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++
Sbjct: 9 ARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLV 68
Query: 114 -CSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQ 172
C I P S+V +FE +S T +ED P Q R D+YV LS LPW G EL E+
Sbjct: 69 NCHVIAAP-SMVAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEK 120
Query: 173 VPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNG 232
E++R+ A E+YL R+ T L + + K ++++L+ LW ++Q L +
Sbjct: 121 KDAEMDRIFANTESYLKRRQKTHVPMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDR 176
Query: 233 WKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRI 292
W+ + RP+L+F++ L H P + P P +V + + P+
Sbjct: 177 WQERHILRPYLAFDSILCEALQHNLPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG- 233
Query: 293 RRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEY 348
+ P S S ++RF++EE L ++ RK CA +V+ P +P Y
Sbjct: 234 ---PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH- 283
Query: 349 LMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXX----XXXXXXXXXXLFDKIADL 404
+ E IF+ + YT ++++LCK L+ ++ +
Sbjct: 284 -IVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVVSFPLAQATEMLYMRLDTM 342
Query: 405 DME--CRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWD 462
+ C RFI WFSHHLSNFQF W WE+W+ L+ +P+ FV+EVLE+ +RLSY
Sbjct: 343 NTTTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLNQDPESPKPKFVREVLEKCMRLSYHQ 402
Query: 463 KVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVW 522
++ + P L P +KY ++ H+++ L K + T EI
Sbjct: 403 RILDIVP--PTFSALCPANPTCIYKYG-DESSNTLPGHSVALCLAVAFKSKATNDEIFSI 459
Query: 523 VEESVYPIH------GLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDH 573
+++ P G + I+V VQTLL + +KSF+H + L ++ +V +
Sbjct: 460 LKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESD 519
Query: 574 DKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWE 633
+ +L ++ + W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE
Sbjct: 520 EGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLF-VWE 578
Query: 634 VLRNAVSKTYNRICDLRKEIISLKK 658
+L + + K + ++KE+ K+
Sbjct: 579 ILHSTIRKMNKHVLKIQKELEEAKE 603
Score = 48 (22.0 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 628 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 672
>DICTYBASE|DDB_G0269814 [details] [associations]
symbol:ncbp1 "nuclear cap-binding protein subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 dictyBase:DDB_G0269814 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0031047 GO:GO:0000398 Gene3D:1.25.40.180
GO:GO:0006370 GO:GO:0000339 HSSP:Q09161 eggNOG:NOG303489 KO:K12882
PANTHER:PTHR12412 RefSeq:XP_646314.1 ProteinModelPortal:Q55D17
STRING:Q55D17 PRIDE:Q55D17 EnsemblProtists:DDB0233457
GeneID:8617269 KEGG:ddi:DDB_G0269814 InParanoid:Q55D17 OMA:QSIENAP
ProtClustDB:CLSZ2729301 GO:GO:0005846 Uniprot:Q55D17
Length = 772
Score = 260 (96.6 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 62/199 (31%), Positives = 103/199 (51%)
Query: 446 VFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDG-RERSEEH-ALS 503
++++ VL RLSY +K+KQ++ + + LPP P FK+ D E S+E A S
Sbjct: 486 IYIKRVLSSLCRLSYLEKIKQNLPSE--YHQYLPPSPAPTFKFLNADNPEEESKELIAES 543
Query: 504 AELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYG 563
+L K ++ II V P H + + ++++ + +L IGS SF+HL +ERY
Sbjct: 544 HKLLLSFKTKEPLENIISHVAN--IPSH-INI-VELLTKCILQIGSTSFSHLTYAIERYI 599
Query: 564 QVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENID 623
+ + D + I + FWK + Q+ I +D+ + +++I + V W PENID
Sbjct: 600 TLFKTVLKSQDDRQECIRSIFEFWKLSHQHIVIVVDKFVTFKIIYPIDTVTWFMKPENID 659
Query: 624 QFHASDRPWEVLRNAVSKT 642
+F WE L N++ KT
Sbjct: 660 RFITEPFTWECLHNSIQKT 678
Score = 255 (94.8 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 53/157 (33%), Positives = 84/157 (53%)
Query: 283 DAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPV 342
D +L+YP + + +F ++ + ++R+I+E+Y++D+L FFN KEC+ ++ +LPV
Sbjct: 286 DEKLEYPNNLNK-PLFRVLSND-NNNSVERYIVEDYIIDILSFFNSDHKECSKFIYSLPV 343
Query: 343 PFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIA 402
+ ++ ETI FKPIYY+++ +D K LF+ I
Sbjct: 344 ENEIDDIVVETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIPVFAYAINL-LFENIH 402
Query: 403 DLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLP 439
LD E RF L F+HHLSNF + W W +WA L P
Sbjct: 403 KLDFEVMDRFALAFAHHLSNFDYKWIWSDWAQSLVPP 439
Score = 232 (86.7 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 68/267 (25%), Positives = 129/267 (48%)
Query: 2 SSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKI 61
S +L+++IGD + L+ +I+ + ++ S + + C + +K
Sbjct: 38 SKLTSLIVRIGDKA-----TSSLESNIDALANALLADIPKQSSLIQDILFKCVSSLTYKT 92
Query: 62 PLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPG 121
P+Y TLVGL+N++N +F K+VV + A++ ++L+RF+ ++ + +L
Sbjct: 93 PIYATLVGLINVKNSEFGKEVVCRLVDEIFSAMEKKKFHNAKLLIRFIPELVNANVLTIN 152
Query: 122 SLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVM 181
++ ++ETLLS T D P+ +AD++V +LS +PW G L +++ V+
Sbjct: 153 AIFELYETLLS-VLNTSDY---TPN---KADYFVFLVLSTIPWIGEHLSHNHSGQLDAVI 205
Query: 182 AGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSS--NGWKLDSVP 239
E+Y+ R T D F++ + G + D LE + ++++L W ++ +
Sbjct: 206 EECESYIQ-SRSTGDK--KFYQAYNN---GYTD-DRLESMLKQIKSLRDCDQPWIVNGIL 258
Query: 240 RPHLSFEAQLVSGKS--HEFGPISCPE 264
RP+ F L S S H I PE
Sbjct: 259 RPYKHFNETLTSSSSQQHILPTIHFPE 285
>UNIPROTKB|Q6DIE2 [details] [associations]
symbol:ncbp1 "Nuclear cap-binding protein subunit 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0006446 "regulation of translational initiation"
evidence=ISS] [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=ISS] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0008380 GO:GO:0003677 GO:GO:0006446
GO:GO:0003723 GO:GO:0006406 GO:GO:0031047 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 HOGENOM:HOG000007990
CTD:4686 HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK EMBL:CR855671
EMBL:BC075600 RefSeq:NP_001006788.1 UniGene:Str.7354
ProteinModelPortal:Q6DIE2 SMR:Q6DIE2 STRING:Q6DIE2 PRIDE:Q6DIE2
GeneID:448484 KEGG:xtr:448484 Xenbase:XB-GENE-5841194
InParanoid:Q6DIE2 Uniprot:Q6DIE2
Length = 791
Score = 567 (204.7 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 150/525 (28%), Positives = 257/525 (48%)
Query: 148 QARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDE 207
Q R+D+YV +LS LPW G EL E+ E++R+++ +EAYL R+ + L + +
Sbjct: 163 QVRSDWYVYAVLSSLPWVGKELYEKKDVEMDRILSQIEAYLKQRQKLHVSILQVWSAE-- 220
Query: 208 SGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPD 267
K ++++L+ LW ++Q L + W+ + RP+L+F++ L H P + P P
Sbjct: 221 --KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSVLCEALQHNLPPFTPP--PH 276
Query: 268 VPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFN 327
+V + + P+ + P S S ++RF++EE L +L
Sbjct: 277 TEDSVYPVPRVVFRMFDYTDAPEG----PVMPGSHS------VERFVIEENLHCILRSHW 326
Query: 328 GCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXX 383
RK CA +++ P +P Y + E IF + YT ++++LCK
Sbjct: 327 RERKTCAAQLLSYPEKNKIPLNYH--IVEVIFGELFQLPNPPHLDVMYTTLLIELCKLQP 384
Query: 384 XXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVL--DLPKW 441
L+ ++ ++ C RFI WFSHHLSNFQF W WE+W+ L DL K
Sbjct: 385 GSLPQVLAQASEMLYTRLDTMNTICIDRFINWFSHHLSNFQFRWNWEDWSDCLSQDLDKP 444
Query: 442 APQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHA 501
PQ FV+EVLE+ +RLSY ++ + A L P FKY ++ ++
Sbjct: 445 KPQ--FVREVLEKCMRLSYHQRILDIVP--AAFSALYPASPSCVFKYG-DESNSALPGYS 499
Query: 502 LSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQTLLDIGSKSF 552
++ LTN +K + + +EI +++ P G+ + I+V VQTLL + SKSF
Sbjct: 500 VAVALTNAIKNKASDKEIFNILKDIPNPNQDDDDDEGISFNPLKIEVFVQTLLSLASKSF 559
Query: 553 THLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAI 612
+H + L ++ + + + +L ++ V WKN+ Q A+ +D+M+ +++ A+
Sbjct: 560 SHSFSALAKFHDIFKALSESDEGKLHILRVVYDIWKNHPQMIAVLVDKMIRTQIVDCAAV 619
Query: 613 VRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLK 657
W+FSPE F WE+L + + K + ++KE+ +K
Sbjct: 620 ANWIFSPELSRDFPRF-YIWEILHSTIRKMNKHVQKIQKELEDMK 663
Score = 293 (108.2 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 75/260 (28%), Positives = 138/260 (53%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ ++G+ ++ L+ ++E GV+ +L + + + + A +P K+ +Y
Sbjct: 32 ESLICRVGEK-----STSSLESNLEGLAGVLEADLPNYKSKILRILCSVARTLPEKMTVY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R ++ + + L+RFL ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNAYNEAVYLVRFLCDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE+ + T +ED P Q R+D+YV +LS LPW G EL E+ E++R+++
Sbjct: 146 VAMFESFVG---VTQEEDI--P--QVRSDWYVYAVLSSLPWVGKELYEKKDVEMDRILSQ 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
+EAYL R+ + L + + K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 IEAYLKQRQKLHVSILQVWSAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSVLCEALQHNLPPFTPP 274
Score = 54 (24.1 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 696 RLSRLKLHAEKAKNEEISAK------ESLEAKEALFARAVEENEALYLSLYRNFSNVLME 749
RL++ H + N+E S + E +E + A E + L+L +++ F +L E
Sbjct: 665 RLAKQHKHRDSDDNDEDSGRKDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE 724
Query: 750 RLPDASRAG 758
L G
Sbjct: 725 HLVRCETGG 733
>UNIPROTKB|Q4R440 [details] [associations]
symbol:Q4R440 "Testis cDNA clone: QtsA-12580, similar to
human nuclear cap binding protein subunit 1, 80kDa (NCBP1),"
species:9541 "Macaca fascicularis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISS]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006379 PANTHER:PTHR12412 HOVERGEN:HBG080328
EMBL:AB179075 ProteinModelPortal:Q4R440 SMR:Q4R440 Uniprot:Q4R440
Length = 723
Score = 532 (192.3 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 147/535 (27%), Positives = 252/535 (47%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ A E+YL R+ T
Sbjct: 87 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHV 144
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + D K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 145 PMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 200
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 201 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 248
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 249 ENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 306
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W
Sbjct: 307 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 366
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY ++ + P L P +KY E
Sbjct: 367 SDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVP--PTFSALCPANPTCIYKYGDES 424
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L K + T EI +++ P G + I+V VQT
Sbjct: 425 SNSLPG-HSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQT 483
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 484 LLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 543
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 544 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 597
Score = 289 (106.8 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 73/211 (34%), Positives = 115/211 (54%)
Query: 54 AEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM 113
A +P K+ +Y TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++
Sbjct: 9 ARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLV 68
Query: 114 -CSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQ 172
C I P S+V +FE +S T +ED P Q R D+YV LS LPW G EL E+
Sbjct: 69 NCHVIAAP-SMVAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEK 120
Query: 173 VPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNG 232
E++R+ A E+YL R+ T L + D K ++++L+ LW ++Q L +
Sbjct: 121 KDAEMDRIFANTESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDR 176
Query: 233 WKLDSVPRPHLSFEAQLVSGKSHEFGPISCP 263
W+ + RP+L+F++ L H P + P
Sbjct: 177 WQERHILRPYLAFDSILCEALQHNLPPFTPP 207
Score = 48 (22.0 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 622 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 666
>FB|FBgn0022942 [details] [associations]
symbol:Cbp80 "cap binding protein 80" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=IMP] [GO:0045071 "negative regulation
of viral genome replication" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 SUPFAM:SSF48371 GO:GO:0022008 GO:GO:0003677
EMBL:AE014298 GO:GO:0045071 GO:GO:0030422 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 Gene3D:1.25.40.180 GO:GO:0006370
GO:GO:0031053 GO:GO:0000339 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:AJ238970
EMBL:AY051796 EMBL:AL031766 RefSeq:NP_524750.2 RefSeq:NP_726938.1
UniGene:Dm.1832 ProteinModelPortal:Q7K4N3 SMR:Q7K4N3 IntAct:Q7K4N3
STRING:Q7K4N3 PaxDb:Q7K4N3 PRIDE:Q7K4N3 EnsemblMetazoa:FBtr0070683
EnsemblMetazoa:FBtr0070684 GeneID:44409 KEGG:dme:Dmel_CG7035
UCSC:CG7035-RA CTD:44409 FlyBase:FBgn0022942 InParanoid:Q7K7B2
OrthoDB:EOG4RR4Z8 PhylomeDB:Q7K4N3 ChiTaRS:NCBP1 GenomeRNAi:44409
NextBio:837236 Bgee:Q7K4N3 Uniprot:Q7K4N3
Length = 800
Score = 546 (197.3 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 140/549 (25%), Positives = 259/549 (47%)
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V+ +LL T +D + Q R D++V +LS LPW G +L E+ +E ++
Sbjct: 142 VISATSLLQLLDTMIDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLR 201
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
+E YL+ R L + D ++++L+ LW +++ L + W +PRP+L
Sbjct: 202 IEVYLNKRSKKHHNALRVWSSDAPHP----QEEYLDCLWAQIRKLRQDNWAEKHIPRPYL 257
Query: 244 SFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIF---PA 300
F++ L H ++PT V H + E P + R+ + P
Sbjct: 258 VFDSILCEALQH-----------NLPTIVPPPHHD----NFEYPMPWVVYRMFDYTDCPD 302
Query: 301 SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRY--EYLMAETIFSXX 358
+ I+RF++EE+L ++ ++ RK+CA +++ P + EY + E +F+
Sbjct: 303 GPNLPGAHSIERFLIEEHLHHIIETYHHERKDCAAQLLSFPYKHKIPLEYCIVEVVFAEL 362
Query: 359 XXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSH 418
+ I Y ++++LCK LF +I ++ C RF+ WFS+
Sbjct: 363 FHMPTPRYLDICYGSILIELCKLQPATLPQVLAQATEILFMRIDSMNTSCFDRFVNWFSY 422
Query: 419 HLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELL 478
HLSNF+F W W+EW L L P+ F+QEVL++ +RLSY ++ + + A +L+
Sbjct: 423 HLSNFKFTWSWDEWDSCLLLDGEHPRPKFIQEVLQKCLRLSYHQRITEMMPTTYA--KLI 480
Query: 479 PPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEE---SVYPIHGLG- 534
P PN+KY+ E+ ++ +L ++ + T E++ +++ S Y +
Sbjct: 481 PLTPVPNYKYANEEAANLPGT-TVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSD 539
Query: 535 -----VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKN 589
+ I V VQTLL++GSKSF+H + ++ V + + Q+ ++ + W +
Sbjct: 540 GSFNALKIDVFVQTLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSS 599
Query: 590 NTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDL 649
+ Q + ID+++ +++ A+ W+FS E +F WE+L + K + L
Sbjct: 600 HQQMMVVLIDKLLKLQIVDCSAVATWIFSKEMTGEF-TKLYLWEILHLTIKKMNKHVIKL 658
Query: 650 RKEIISLKK 658
E+ K+
Sbjct: 659 NTELSEAKE 667
Score = 264 (98.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 68/263 (25%), Positives = 131/263 (49%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y
Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVY 89
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+
Sbjct: 90 TTLVGLLNAKNYKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLL 149
Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
+ +T++ + +ED P Q R D++V +LS LPW G +L E+ +E ++ +
Sbjct: 150 QLLDTMIDVS----NEDTV-P--QVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRI 202
Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
E YL+ R L + D ++++L+ LW +++ L + W +PRP+L
Sbjct: 203 EVYLNKRSKKHHNALRVWSSDAPHP----QEEYLDCLWAQIRKLRQDNWAEKHIPRPYLV 258
Query: 245 FEAQLVSGKSHEFGPISCPEQPD 267
F++ L H I P D
Sbjct: 259 FDSILCEALQHNLPTIVPPPHHD 281
Score = 45 (20.9 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 703 HAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERL 751
HA+K E + E +E K L A V + L+L +++ F +L E L
Sbjct: 693 HADKPSEEVV---ERMEEK--LEAANVNQKR-LFLIVFQRFIMILSEHL 735
>UNIPROTKB|Q09161 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9606 "Homo sapiens" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005845 "mRNA cap binding complex" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0006406
"mRNA export from nucleus" evidence=IMP;TAS] [GO:0006446
"regulation of translational initiation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0050434 "positive
regulation of viral transcription" evidence=TAS] [GO:0000387
"spliceosomal snRNP assembly" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677
GO:GO:0006446 Reactome:REACT_1675 GO:GO:0030529 GO:GO:0006368
GO:GO:0006406 GO:GO:0031047 GO:GO:0005845 GO:GO:0000387
GO:GO:0034660 Reactome:REACT_1788 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0050434 GO:GO:0006379 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 GO:GO:0000339 PDB:3FEX PDB:3FEY
PDBsum:3FEX PDBsum:3FEY GO:GO:0008334 eggNOG:NOG303489 KO:K12882
OMA:LICRVGE PANTHER:PTHR12412 HOGENOM:HOG000007990 CTD:4686
HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK ChiTaRS:NCBP1 EMBL:X80030
EMBL:D32002 EMBL:AK312807 EMBL:AB209233 EMBL:AL445531 EMBL:AL162385
EMBL:BC001450 IPI:IPI00019380 PIR:S50082 RefSeq:NP_002477.1
UniGene:Hs.595669 UniGene:Hs.686479 PDB:1H2T PDB:1H2U PDB:1H2V
PDB:1H6K PDB:1N52 PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V
PDBsum:1H6K PDBsum:1N52 PDBsum:1N54 DisProt:DP00392
ProteinModelPortal:Q09161 SMR:Q09161 DIP:DIP-33244N IntAct:Q09161
MINT:MINT-248693 STRING:Q09161 PhosphoSite:Q09161 DMDM:1705654
PaxDb:Q09161 PeptideAtlas:Q09161 PRIDE:Q09161 DNASU:4686
Ensembl:ENST00000375130 Ensembl:ENST00000375147 GeneID:4686
KEGG:hsa:4686 UCSC:uc004axq.3 GeneCards:GC09P100395 HGNC:HGNC:7658
MIM:600469 neXtProt:NX_Q09161 PharmGKB:PA31461 InParanoid:Q09161
EvolutionaryTrace:Q09161 GenomeRNAi:4686 NextBio:18072
ArrayExpress:Q09161 Bgee:Q09161 CleanEx:HS_NCBP1
Genevestigator:Q09161 GermOnline:ENSG00000136937 Uniprot:Q09161
Length = 790
Score = 532 (192.3 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 147/535 (27%), Positives = 252/535 (47%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ A E+YL R+ T
Sbjct: 154 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHV 211
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + D K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 212 PMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 267
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 268 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 315
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 316 ENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 373
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY ++ + P L P +KY E
Sbjct: 434 SDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVP--PTFSALCPANPTCIYKYGDES 491
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L K + T EI +++ P G + I+V VQT
Sbjct: 492 SNSLPG-HSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQT 550
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 551 LLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 610
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 611 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 664
Score = 315 (115.9 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 81/260 (31%), Positives = 138/260 (53%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFAN 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
Score = 48 (22.0 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 689 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 733
>UNIPROTKB|F1PUP7 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0005845 "mRNA
cap binding complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear
cap binding complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677 GO:GO:0006446
GO:GO:0003723 GO:GO:0030529 GO:GO:0006406 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
KO:K12882 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 CTD:4686 EMBL:AAEX03007976
RefSeq:XP_532003.2 Ensembl:ENSCAFT00000003862 GeneID:474772
KEGG:cfa:474772 Uniprot:F1PUP7
Length = 790
Score = 527 (190.6 bits), Expect = 2.5e-49, Sum P(2) = 2.5e-49
Identities = 146/535 (27%), Positives = 252/535 (47%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ A E+YL R+ T
Sbjct: 154 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHV 211
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + + K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 212 PMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 267
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 268 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 315
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 316 ENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 373
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY ++ + P L P +KY E
Sbjct: 434 SDCLTQDPESPKPKFVREVLEKCMRLSYHQRILDIVP--PTFSALCPANPTCIYKYGDES 491
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L K + T EI +++ P G + I+V VQT
Sbjct: 492 SNSLPG-HSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQT 550
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 551 LLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 610
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 611 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 664
Score = 311 (114.5 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 80/260 (30%), Positives = 138/260 (53%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFAN 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL R+ T L + + K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TESYLKRRQKTHVPMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
Score = 48 (22.0 bits), Expect = 2.5e-49, Sum P(2) = 2.5e-49
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 689 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 733
>UNIPROTKB|Q5ZJZ6 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9031 "Gallus gallus" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=ISS] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0005845 "mRNA cap binding complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0006370
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 HOGENOM:HOG000007990
EMBL:AJ720288 IPI:IPI00651211 RefSeq:NP_001026611.1
UniGene:Gga.2984 ProteinModelPortal:Q5ZJZ6 SMR:Q5ZJZ6 STRING:Q5ZJZ6
GeneID:427379 KEGG:gga:427379 CTD:4686 HOVERGEN:HBG080328
InParanoid:Q5ZJZ6 OrthoDB:EOG4RXXZK NextBio:20828646 Uniprot:Q5ZJZ6
Length = 793
Score = 528 (190.9 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 152/537 (28%), Positives = 257/537 (47%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+Y+ LS LPW G EL E+ E++R+++ E+YL R+
Sbjct: 156 SVTQEEDVP--QVRCDWYIFAFLSSLPWVGKELYEKKDAEMDRLLSQTESYLKRRQKIHV 213
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + D K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 214 PMLQVWTAD----KPHPQEEYLDCLWSQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 269
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 270 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 317
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ RK CA +++ P +P Y + E IF+ + YT
Sbjct: 318 ENLHCIIKSHWKERKTCAAQLLSYPGNNKIPLNYH--IVEVIFAELFQLPSPPHIEVMYT 375
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W
Sbjct: 376 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 435
Query: 433 AYVL--DLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSM 490
+ L DL K P+ FV+EVLE+ +RLSY ++ I+ PA +L P P Y
Sbjct: 436 SDCLTQDLEK--PKPKFVREVLEKCMRLSYHQRI---IDIVPASFSVLSP-ANPVCIYKY 489
Query: 491 EDGRERS-EEHALSAELTNKVKGRQTAREIIVWVEESVYPIHG----LGVT-----IKVV 540
D RS + ++ LT +K + + EI +++ P G T I+V
Sbjct: 490 GDESNRSLPGYTVALCLTIAIKNKASNDEIFSILKDVPNPNQDDDDDEGFTFNPLKIEVF 549
Query: 541 VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR 600
VQTLL + +KSF+H + L ++ +V + + +L ++ V WKN+ Q A+ +D+
Sbjct: 550 VQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVVYEVWKNHPQMIAVLVDK 609
Query: 601 MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLK 657
M+ +++ A+ W+FS E F WE+L + + K + + KE+ K
Sbjct: 610 MIRTQIVDCAAVANWIFSSELAHDF-TRFYIWEILHSTIRKMNKHVLKIHKELEDTK 665
Score = 292 (107.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 79/260 (30%), Positives = 135/260 (51%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ ++G E NS L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 34 ESLICRVG----EKSNSS-LESNLEGLAGVLEADLPNYKSKILRILCTVARLLPEKLTVY 88
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ ++ L + L+RFL+ ++ C I P S+
Sbjct: 89 TTLVGLLNARNYNFGGEFVEAMIRQLKECLKVNMYNEAVHLVRFLSDLVNCHVIAAP-SM 147
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+Y+ LS LPW G EL E+ E++R+++
Sbjct: 148 VAMFENFVS---VTQEEDV--P--QVRCDWYIFAFLSSLPWVGKELYEKKDAEMDRLLSQ 200
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL R+ L + D K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 201 TESYLKRRQKIHVPMLQVWTAD----KPHPQEEYLDCLWSQIQKLKKDRWQERHILRPYL 256
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 257 AFDSILCEALQHNLPPFTPP 276
Score = 44 (20.5 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 710 EEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAG 758
E+ +E +E + A E + L+L +++ F +L E L G
Sbjct: 687 EDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMLLTEHLVRCETGG 735
>UNIPROTKB|E1BMM0 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005845 "mRNA cap binding complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000339 "RNA cap binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0006446 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:DAAA02023246
IPI:IPI00923937 Ensembl:ENSBTAT00000061170 Uniprot:E1BMM0
Length = 790
Score = 524 (189.5 bits), Expect = 6.3e-49, Sum P(2) = 6.3e-49
Identities = 146/535 (27%), Positives = 251/535 (46%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ A E YL R+ T
Sbjct: 154 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFASTENYLKRRQKTHV 211
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + + K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 212 PMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 267
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 268 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 315
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 316 ENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 373
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY ++ + P L P +KY E
Sbjct: 434 SDCLTQDPESPKPKFVREVLEKCMRLSYHQRILDFVP--PTFSALCPANPTCIYKYGDES 491
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L K + T EI +++ P G + I+V VQT
Sbjct: 492 SNSLPG-HSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQT 550
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 551 LLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 610
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 611 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 664
Score = 311 (114.5 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 81/260 (31%), Positives = 137/260 (52%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L S N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKSNNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFAS 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E YL R+ T L + + K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TENYLKRRQKTHVPMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
Score = 48 (22.0 bits), Expect = 6.3e-49, Sum P(2) = 6.3e-49
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 689 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 733
>RGD|1308973 [details] [associations]
symbol:Ncbp1 "nuclear cap binding protein subunit 1"
species:10116 "Rattus norvegicus" [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=ISO;ISS]
[GO:0000339 "RNA cap binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005845 "mRNA cap binding
complex" evidence=ISO;ISS] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=ISO;ISS] [GO:0006379 "mRNA cleavage" evidence=ISO;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=ISO;ISS]
[GO:0006446 "regulation of translational initiation"
evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO;ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=ISO;ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 RGD:1308973 GO:GO:0005634 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380 GO:GO:0003677
GO:GO:0006446 GO:GO:0003723 GO:GO:0030529 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0006379 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990
CTD:4686 HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK EMBL:BC092199
IPI:IPI00364994 RefSeq:NP_001014785.1 UniGene:Rn.13482
ProteinModelPortal:Q56A27 SMR:Q56A27 STRING:Q56A27
PhosphoSite:Q56A27 PRIDE:Q56A27 Ensembl:ENSRNOT00000030825
GeneID:298075 KEGG:rno:298075 UCSC:RGD:1308973 InParanoid:Q56A27
NextBio:643112 Genevestigator:Q56A27 GermOnline:ENSRNOG00000023605
Uniprot:Q56A27
Length = 790
Score = 523 (189.2 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 146/535 (27%), Positives = 251/535 (46%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ + E+YL R+ T
Sbjct: 154 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFSSTESYLKRRQKTHV 211
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + D K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 212 PMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 267
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 268 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 315
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ + RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 316 ENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 373
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ + C RFI WFSHHLSNFQF W WE+W
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY + + P L P +KY E
Sbjct: 434 SDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVP--PTFSALCPANPTCIYKYGDES 491
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L+ K + T EI +++ P G + I+V VQT
Sbjct: 492 SNSLPG-HSVALCLSVAFKSKATNDEIFSILKDVPNPNQVDDDDEGFRFNPLKIEVFVQT 550
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 551 LLHLAAKSFSHSFSALAKFHEVFKTLAESDKGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 610
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 611 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 664
Score = 312 (114.9 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 80/260 (30%), Positives = 138/260 (53%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ +
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFSS 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
Score = 48 (22.0 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 689 EEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 733
>MGI|MGI:1891840 [details] [associations]
symbol:Ncbp1 "nuclear cap binding protein subunit 1"
species:10090 "Mus musculus" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=ISO]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO]
[GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=ISO] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 MGI:MGI:1891840 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 EMBL:CH466565
GO:GO:0030529 GO:GO:0006406 GO:GO:0031047 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
eggNOG:NOG303489 KO:K12882 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990 CTD:4686
HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK ChiTaRS:NCBP1 EMBL:AK134334
EMBL:AK169557 EMBL:AL929438 EMBL:AL732615 EMBL:BC055777
EMBL:BC138898 IPI:IPI00458056 RefSeq:NP_001028373.2
UniGene:Mm.389536 PDB:3UKZ PDB:3UL0 PDBsum:3UKZ PDBsum:3UL0
ProteinModelPortal:Q3UYV9 SMR:Q3UYV9 STRING:Q3UYV9
PhosphoSite:Q3UYV9 PaxDb:Q3UYV9 PRIDE:Q3UYV9
Ensembl:ENSMUST00000030014 GeneID:433702 KEGG:mmu:433702
UCSC:uc008stk.1 InParanoid:B1AWH4 NextBio:408905 Bgee:Q3UYV9
Genevestigator:Q3UYV9 GermOnline:ENSMUSG00000028330 Uniprot:Q3UYV9
Length = 790
Score = 521 (188.5 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 146/535 (27%), Positives = 251/535 (46%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+YV LS LPW G EL E+ E++R+ + E+YL R+ T
Sbjct: 154 SVTQEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFSTTESYLKRRQKTHV 211
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
L + D K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 212 PMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 267
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 268 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 315
Query: 317 EYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMAETIFSXXXXXXXXXFKPIYYT 372
E L ++ + RK CA +V+ P +P Y + E IF+ + YT
Sbjct: 316 ENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYH--IVEVIFAELFQLPAPPHIDVMYT 373
Query: 373 LVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEW 432
++++LCK L+ ++ + C RFI WFSHHLSNFQF W WE+W
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 433 AYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMED 492
+ L +P+ FV+EVLE+ +RLSY + + P L P +KY E
Sbjct: 434 SDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVP--PTFSALCPANPTCIYKYGDES 491
Query: 493 GRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH------GLG---VTIKVVVQT 543
H+++ L+ K + T EI +++ P G + I+V VQT
Sbjct: 492 SNSLPG-HSVALCLSVAFKSKATNDEIFSILKDVPNPNQVDDDDEGFRFNPLKIEVFVQT 550
Query: 544 LLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMG 603
LL + +KSF+H + L ++ +V + +L ++ + W+N+ Q A+ +D+M+
Sbjct: 551 LLHLAAKSFSHSFSALAKFHEVFKTLAESDKGKLHVLRVMFEVWRNHPQMIAVLVDKMIR 610
Query: 604 YRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKK 658
+++ A+ W+FS E F WE+L + + K + ++KE+ K+
Sbjct: 611 TQIVDCAAVANWIFSSELSRDFTRLF-VWEILHSTIRKMNKHVLKIQKELEEAKE 664
Score = 310 (114.2 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 80/260 (30%), Positives = 138/260 (53%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ +
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFST 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
Score = 48 (22.0 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 715 KESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGT 759
+E +E + A E + L+L +++ F +L E L GT
Sbjct: 689 EEQIERLQEKVEAAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 733
>UNIPROTKB|F1P0M6 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9031 "Gallus gallus" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371 GO:GO:0000184
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 GO:GO:0030529
GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 IPI:IPI00651211 EMBL:AADN02016025
EMBL:AADN02060115 EMBL:AADN02028165 EMBL:AADN02060114
EMBL:AADN02060116 Ensembl:ENSGALT00000003255 Uniprot:F1P0M6
Length = 796
Score = 513 (185.6 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 149/536 (27%), Positives = 254/536 (47%)
Query: 137 TVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSD 196
+V +++ P Q R D+Y+ LS LPW G EL E+ E++R+++ E+YL++ R
Sbjct: 157 SVTQEEDVP--QVRCDWYIFAFLSSLPWVGKELYEKKDAEMDRLLSQTESYLNVNRRRQK 214
Query: 197 TGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHE 256
+ + + K ++++L+ LW ++Q L + W+ + RP+L+F++ L H
Sbjct: 215 IHVPMLQVWT-ADKPHPQEEYLDCLWSQIQKLKKDRWQERHILRPYLAFDSILCEALQHN 273
Query: 257 FGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILE 316
P + P P +V + + P+ + P S S ++RF++E
Sbjct: 274 LPPFTPP--PHTEDSVYPMPRVIFRMFDYTDDPEG----PVMPGSHS------VERFVIE 321
Query: 317 EYLLDVLLFFNGCRKECAFYMV---NLPVPFRYEYLMAETIFSXXXXXXXXXFKPIYYTL 373
E L ++ RK V N +P Y + E IF+ + YT
Sbjct: 322 ENLHCIIKSHWKERKTWVGLAVTPWNNKIPLNYH--IVEVIFAELFQLPSPPHIEVMYTT 379
Query: 374 VIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWA 433
++++LCK L+ ++ ++ C RFI WFSHHLSNFQF W WE+W+
Sbjct: 380 LLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWS 439
Query: 434 YVL--DLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSME 491
L DL K P+ FV+EVLE+ +RLSY ++ I+ PA +L P P Y
Sbjct: 440 DCLTQDLEK--PKPKFVREVLEKCMRLSYHQRI---IDIVPASFSVLSP-ANPVCIYKYG 493
Query: 492 DGRERS-EEHALSAELTNKVKGRQTAREIIVWVEESVYPIHG----LGVT-----IKVVV 541
D RS + ++ LT +K + + EI +++ P G T I+V V
Sbjct: 494 DESNRSLPGYTVALCLTIAIKNKASNDEIFSILKDVPNPNQDDDDDEGFTFNPLKIEVFV 553
Query: 542 QTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRM 601
QTLL + +KSF+H + L ++ +V + + +L ++ V WKN+ Q A+ +D+M
Sbjct: 554 QTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVVYEVWKNHPQMIAVLVDKM 613
Query: 602 MGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLK 657
+ +++ A+ W+FS E F WE+L + + K + + KE+ K
Sbjct: 614 IRTQIVDCAAVANWIFSSELAHDF-TRFYIWEILHSTIRKMNKHVLKIHKELEDTK 668
Score = 296 (109.3 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 77/260 (29%), Positives = 136/260 (52%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ ++G E NS L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 35 ESLICRVG----EKSNSS-LESNLEGLAGVLEADLPNYKSKILRILCTVARLLPEKLTVY 89
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ ++ L + L+RFL+ ++ C I P S+
Sbjct: 90 TTLVGLLNARNYNFGGEFVEAMIRQLKECLKVNMYNEAVHLVRFLSDLVNCHVIAAP-SM 148
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+Y+ LS LPW G EL E+ E++R+++
Sbjct: 149 VAMFENFVS---VTQEEDV--P--QVRCDWYIFAFLSSLPWVGKELYEKKDAEMDRLLSQ 201
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E+YL++ R + + + K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 202 TESYLNVNRRRQKIHVPMLQVWT-ADKPHPQEEYLDCLWSQIQKLKKDRWQERHILRPYL 260
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 261 AFDSILCEALQHNLPPFTPP 280
Score = 44 (20.5 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 710 EEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAG 758
E+ +E +E + A E + L+L +++ F +L E L G
Sbjct: 690 EDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMLLTEHLVRCETGG 738
>FB|FBgn0038887 [details] [associations]
symbol:CG7907 species:7227 "Drosophila melanogaster"
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0000339
"RNA cap binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 EMBL:AE014297 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0000398 Gene3D:1.25.40.180 GO:GO:0000339
KO:K12882 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
OMA:ENETHPL EMBL:BT022776 EMBL:BT022805 RefSeq:NP_001097860.1
RefSeq:NP_001097861.1 UniGene:Dm.27360 SMR:Q4V551
EnsemblMetazoa:FBtr0113261 EnsemblMetazoa:FBtr0113262 GeneID:42539
KEGG:dme:Dmel_CG7907 UCSC:CG7907-RB FlyBase:FBgn0038887
eggNOG:NOG256595 InParanoid:Q4V551 OrthoDB:EOG4QBZMG
GenomeRNAi:42539 NextBio:829318 Uniprot:Q4V551
Length = 753
Score = 471 (170.9 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 153/613 (24%), Positives = 277/613 (45%)
Query: 50 IINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFL 109
++ C P + Y TLVGL+N+ + +F + + K +++ + +R R ++ +
Sbjct: 72 LVICLGYYPGQASAYATLVGLINVADFEFGSECLLFMAHKVGESVHIRDWNRCRGVVHCM 131
Query: 110 TVMMCSKILQPGSLVVVFETLLSSAATTVD-EDKGNPSWQARADFYVTCILSCLPWGGAE 168
+ ++L ++ + L D +D + Q R DF C+LS +P G +
Sbjct: 132 VDLYHCQVLPSSYILKLLAAFLKDCEALKDPDDLVGVTPQIRRDFLAYCVLSAMPLIGRD 191
Query: 169 LIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQAL 228
L + ++++ L+ Y+ R LS + + ++ +D+LE LW +V +
Sbjct: 192 LEGETA--FDKLIVSLQIYIKKRSALHTNMLSVWPDFNQ-------RDYLELLWQQVDGM 242
Query: 229 SSNGW---KLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAE 285
N W + +PRP+ SF L G+ H+ D A H+
Sbjct: 243 RQNHWAEPEHQLIPRPYKSFSETLSHGRIHQLR--------DYDLAA---------HEER 285
Query: 286 LKYPQRIRRLNIFPA-SKSEV-DMQP---IDRFILEEYLLDVLLFFNGCRKECA----FY 336
+YP IF S E+ +M P I+R +LE ++LD+L+ F+ RK CA Y
Sbjct: 286 CRYPLPRVCFRIFSCDSVGEIPNMPPPVSIERHLLEAHILDILISFHKERKICADSLLMY 345
Query: 337 MVNLP-VPFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXX 395
+ P +P Y Y + E I + I Y ++++LCK
Sbjct: 346 AASKPQLPV-Y-YCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQALD 403
Query: 396 XLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLP------KWAPQRVFVQ 449
+++++ + + C R + W SHH+SNF F W +WA L P P+ VF++
Sbjct: 404 IIYNRLNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQGLPSPIDPSATNLQPKVVFLR 463
Query: 450 EVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNK 509
E+L++ RLSY ++K + + L + LPP P+FK+ D E LS +L
Sbjct: 464 ELLKKCFRLSYHQRIKDVVPDI--LADFLPPPVLPHFKFV--D--ETLPGAILSKDLLEA 517
Query: 510 VKGRQTAREIIVWVEESVYPIHGLGVTIKVVV--QTLLDIGSKSFTHLITVLERYGQVIS 567
++ Q + E+I E + G+G +K+ V Q L +GSKSF+H +L +Y V
Sbjct: 518 MRSPQASPEMI---SEIIKSSTGIGPLLKINVFTQNCLHLGSKSFSHTFGILRKYHSVFK 574
Query: 568 K-ICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFH 626
+ D ++Q ++ + W + Q + ++++ +I +++VRW+F P +
Sbjct: 575 DLVAGDPERQAAVLNGIFDVWVASDQYKFVVTEKLVTGLIIEPISVVRWIFGPSMRKEL- 633
Query: 627 ASDRPWEVLRNAV 639
WE+L +A+
Sbjct: 634 TKIYIWELLHSAL 646
Score = 38 (18.4 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 760 LQDLKSTHADAMAVDLEEPSAME 782
L+ LK VD+++PSA +
Sbjct: 646 LRHLKRVQQKIEVVDVDDPSACD 668
>WB|WBGene00018156 [details] [associations]
symbol:ncbp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0008380
GO:GO:0003677 GO:GO:0040011 GO:GO:0040018 GO:GO:0003723
GO:GO:0040035 GO:GO:0031047 GO:GO:0040002 Gene3D:1.25.40.180
GO:GO:0006370 HSSP:Q09161 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 EMBL:FO081318 PIR:T15197 RefSeq:NP_491850.2
ProteinModelPortal:O01763 SMR:O01763 STRING:O01763 PaxDb:O01763
EnsemblMetazoa:F37E3.1 GeneID:172345 KEGG:cel:CELE_F37E3.1
UCSC:F37E3.1 CTD:172345 WormBase:F37E3.1
GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990 InParanoid:O01763
NextBio:875137 Uniprot:O01763
Length = 798
Score = 419 (152.6 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
Identities = 153/574 (26%), Positives = 254/574 (44%)
Query: 109 LTVMMCSKILQPGSLVV--VFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGG 166
L + +C + G L + E L S A +E+ P Q R D+Y+ +L CLPW G
Sbjct: 127 LAIFLCD-LGNSGVLTAQSIGEYLESFIAAAFEENM--P--QVRNDYYIQTVLRCLPWIG 181
Query: 167 AELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQ 226
EL E+ PE++E + + YL +R L + E K ++D+LE L +++
Sbjct: 182 KELTEKAPEQMENIGEAIGKYLELRNKNHVALLQVWREGSTDQK---QEDYLESLSAQIE 238
Query: 227 ALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAEL 286
AL + W + +PR + FE L H PE H +++
Sbjct: 239 ALRNADWVENHIPRHYSGFETTLQDALQHNLPSFQSPE-----------------HTSDM 281
Query: 287 KYPQRIRRLNIFP-ASKSEVDMQP------IDRFILEEYLLDVLLF--FN--GCRKEC-A 334
YP + +F A S +P IDRF+ E + ++ FN C +E A
Sbjct: 282 IYPYPLVVFRLFQDADCSAFSSKPLPGDSSIDRFLFEGEIAWIIEKNQFNRKACARELLA 341
Query: 335 FYMVNLPVPFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXX 394
F N VP + L+ ETIF + I++ ++++L K
Sbjct: 342 FAEENPSVPIGF--LIFETIFGQMLRLPHAPYPAIFHCSLVLELLKLKPDDYPQILVQTV 399
Query: 395 XXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLER 454
++ + + C R + WFS HLSNFQ+ + W +W L+ ++ ++FV+EV+E+
Sbjct: 400 ECIYRRADSMQPVCIDRMVDWFSFHLSNFQYRYTWTDWKDCLNKDAFSGSQIFVREVIEK 459
Query: 455 EVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHAL--SAE-LTNKVK 511
R ++K+ I P + P P +Y +++ E+ AL AE T +
Sbjct: 460 CRRFGSYEKI---IAALPQDFVKIHPCS-PEVRYLIDE-----EDTALVQRAETFTQMFQ 510
Query: 512 GRQTAREIIVWV------EESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQV 565
RQ A + + +E Y I+ G+ + V +L + SK+++H + L RY
Sbjct: 511 ERQPAEAFLNELKSNDENDELPYNINEFGLFVMV----MLKMASKTYSHNFSALFRYQTT 566
Query: 566 ISKICPDHDK-QLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQ 624
+ +C + Q L+E + WK N Q I D+++ ++I A+V W+F E + Q
Sbjct: 567 LKTVCDASELYQEKLLETLYSCWKTNQQMLMILTDKLLKMQVIDCSAVVGWLFD-EKMWQ 625
Query: 625 FHASDRPW--EVLRNAVSKTYNRICDLRKEIISL 656
H DR W EVL A+ K +I + K+I L
Sbjct: 626 EH--DRQWLFEVLNQALEKLTRQINVVEKDIKEL 657
Score = 267 (99.0 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 73/255 (28%), Positives = 122/255 (47%)
Query: 10 KIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVG 69
K+G+N G+S ++ +++ + +LE + I CA +P+++ +Y TLVG
Sbjct: 37 KVGENT---GSS--IECNLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRVTVYTTLVG 91
Query: 70 LLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFET 129
LLN +N +F VVE + QD L + L FL + S +L S+ E+
Sbjct: 92 LLNSKNFNFGGDVVEKLISEQQDLLSKQKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLES 151
Query: 130 LLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLS 189
+++A ++ P Q R D+Y+ +L CLPW G EL E+ PE++E + + YL
Sbjct: 152 FIAAAF-----EENMP--QVRNDYYIQTVLRCLPWIGKELTEKAPEQMENIGEAIGKYLE 204
Query: 190 IRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQL 249
+R L + E K ++D+LE L +++AL + W + +PR + FE L
Sbjct: 205 LRNKNHVALLQVWREGSTDQK---QEDYLESLSAQIEALRNADWVENHIPRHYSGFETTL 261
Query: 250 VSGKSHEFGPISCPE 264
H PE
Sbjct: 262 QDALQHNLPSFQSPE 276
Score = 37 (18.1 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 827 YASEIWPHMEKLDAEVLSEDTHP 849
+A + H + EV SE T P
Sbjct: 762 HAETLLKHSSNIADEVFSEGTDP 784
>ASPGD|ASPL0000002953 [details] [associations]
symbol:AN6507 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000109
GO:GO:0016070 Gene3D:1.25.40.180 eggNOG:NOG303489 KO:K12882
PANTHER:PTHR12412 OMA:QSIENAP OrthoDB:EOG4QC4DM RefSeq:XP_664111.1
ProteinModelPortal:Q5AYX3 STRING:Q5AYX3
EnsemblFungi:CADANIAT00007276 GeneID:2870281 KEGG:ani:AN6507.2
HOGENOM:HOG000200580 Uniprot:Q5AYX3
Length = 834
Score = 391 (142.7 bits), Expect = 6.9e-33, P = 6.9e-33
Identities = 149/641 (23%), Positives = 275/641 (42%)
Query: 38 ELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSG 97
E E D+ ++ + P KIP T V + N D V++ +FQ +D+G
Sbjct: 73 EDEELRDNFIEVALDLVLEQPLKIPFIATTVLVANTIKSDLAADVLKHAVERFQHNVDAG 132
Query: 98 NCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTC 157
+++L+RFL + C IL+ + + E L S A VD + + V
Sbjct: 133 AWREVKLLLRFLGCLQC--ILEGDGVFAILEELFSRA---VDLQTASSEDLIGLEL-VKI 186
Query: 158 ILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDF 217
IL +P+ A + + ++ + S D F +S K
Sbjct: 187 ILYTIPYIMASPVSGFESQALGLLEKTDIIASTPHTLVDLANPF---GPDSQKSATVPSV 243
Query: 218 LEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITH 277
+ L ++QA +S W+L+ +PRP + K E GP PD+ T S + +
Sbjct: 244 ISLLQSQLQAEASRNWELECLPRPWANVREGDEEPKRLEEGPKHV--LPDI-TIPSPVLN 300
Query: 278 GKQKHDAEL---KY-PQRIRRL----NIFP-----ASKSEVDMQPIDRFILEEYLLDVLL 324
G + E+ Y Q I + NI A +++ +R ++L+D+
Sbjct: 301 GSRAIFPEVFLSVYGDQDIETVPSTSNIASSLLRDALVDTINIMDFNRIATAKFLIDLDC 360
Query: 325 FFNGC---RKECAFYMV-NLP---VPFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMD 377
+F ++ F + +LP ++ E + + +FS K +YY V+ +
Sbjct: 361 YFTPSIFVKRATPFDKLRDLPDDRTTWKPEDVAVDAVFSQLFQLPSPEHKLVYYHSVLTE 420
Query: 378 LCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLD 437
CK L+ + +D+E RF+ WF+HHLSNF F W W EW L+
Sbjct: 421 CCKIAPAAIAPSLGRAIRFLYRSLDVIDLELSHRFLDWFAHHLSNFGFTWKWSEWIEDLE 480
Query: 438 LPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP---KGGPNFKYSMEDGR 494
LP P+ F+ L++E+RLS+ +++ ++ + P ++L+ K P+FKY+ +
Sbjct: 481 LPLVHPRMAFINGALDKEIRLSFAQRIRGTLPD-P-YQDLISEGKEKDTPDFKYASDTTP 538
Query: 495 ERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV------VQTLLDIG 548
+E + + K + I +EE GLGV I ++ V ++ +G
Sbjct: 539 YANEGREIMQLIRRKAADDEIQPHITA-IEERAA---GLGVEIPLLPSTDAFVTSICFVG 594
Query: 549 SKSFTHLITVLERYGQVISKICP-DHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLI 607
+KS +H+++ +ER + + I P + +I V +W + ID+++ Y ++
Sbjct: 595 AKSLSHVLSCIERNKERLLAIGPRSPGARRQIITSVMEYWVDQPGIGINIIDKLLNYTIL 654
Query: 608 SNLAIVRWVFSPENIDQ--FHASDRPWEVLRNAVSKTYNRI 646
+ L+++ W +++D A +E++ V K NR+
Sbjct: 655 TPLSVIEWALV-DHLDAGTILAKTHIFEMISATVGKVTNRL 694
>UNIPROTKB|A6QNR9 [details] [associations]
symbol:LOC100124428 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0051028 "mRNA transport" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
eggNOG:NOG303489 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
EMBL:DAAA02023246 EMBL:BC148967 IPI:IPI00706915 UniGene:Bt.77239
SMR:A6QNR9 STRING:A6QNR9 Ensembl:ENSBTAT00000012833
HOVERGEN:HBG084570 InParanoid:A6QNR9 NextBio:20788718
Uniprot:A6QNR9
Length = 332
Score = 311 (114.5 bits), Expect = 9.5e-27, P = 9.5e-27
Identities = 81/260 (31%), Positives = 137/260 (52%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMM-CSKILQPGSL 123
TLVGLLN N +F + VE R+ +++L S N + L+RFL+ ++ C I P S+
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKSNNYNEAVYLVRFLSDLVNCHVIAAP-SM 145
Query: 124 VVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAG 183
V +FE +S T +ED P Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 146 VAMFENFVS---VTQEEDV--P--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFAS 198
Query: 184 LEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHL 243
E YL R+ T L + + K ++++L+ LW ++Q L + W+ + RP+L
Sbjct: 199 TENYLKRRQKTHVPMLQVWTAE----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYL 254
Query: 244 SFEAQLVSGKSHEFGPISCP 263
+F++ L H P + P
Sbjct: 255 AFDSILCEALQHNLPPFTPP 274
>POMBASE|SPAC6G10.07 [details] [associations]
symbol:SPAC6G10.07 "nuclear cap-binding complex large
subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISO] [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005846 "nuclear cap binding complex" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 PomBase:SPAC6G10.07 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 SUPFAM:SSF48371 GO:GO:0000184
GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0003677 GO:GO:0003729
GO:GO:0051028 GO:GO:0000243 Gene3D:1.25.40.180 GO:GO:0045292
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 GO:GO:0005846
PIR:T39057 RefSeq:NP_594104.1 ProteinModelPortal:O14253
STRING:O14253 EnsemblFungi:SPAC6G10.07.1 GeneID:2542556
KEGG:spo:SPAC6G10.07 OMA:ENETHPL OrthoDB:EOG4QC4DM NextBio:20803608
Uniprot:O14253
Length = 780
Score = 337 (123.7 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 79/318 (24%), Positives = 157/318 (49%)
Query: 344 FRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIAD 403
++ E ++ E + +KP+YY ++++ C+ ++ +D
Sbjct: 373 WKAEDIIVEAVLGELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVIRLMYTMSSD 432
Query: 404 LDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDK 463
L ++ RFI WFSHHLSNF F W W EW ++L P++VF++E + RE+ LSY+ +
Sbjct: 433 LPLQTLDRFIDWFSHHLSNFNFHWKWNEWIPDVELDDLHPKKVFMRETITRELILSYYTR 492
Query: 464 VKQSIENAPALEELLPPK-GGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREI-IV 521
+ S+ L LL + GPNF Y E + S+++ ++ + E+ I+
Sbjct: 493 ISDSLPEE--LRCLLGEQPSGPNFVYE----NETHPLYQQSSQIIEALRLHKPLEELDII 546
Query: 522 WVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDH-DKQLMLI 580
E + + +++V+ +GS+SF+H + V E++ + D ++ ++
Sbjct: 547 LQSEEIQ--NSETSAVRLVMSCAYSLGSRSFSHALNVFEKHLNTLKHFSRKSLDSEIEVV 604
Query: 581 EEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVS 640
+E+ FWK NA + +D+M+ Y +IS +I+ W+ +++ + S W + V+
Sbjct: 605 DELFSFWKLQPFNAVMWLDKMLNYSIISITSIIEWLIK-QDVTIWSRS-YTWSL----VN 658
Query: 641 KTYNRICDLRKEIISLKK 658
T+N++ + +S K+
Sbjct: 659 TTFNKLAARLRRSVSNKE 676
Score = 38 (18.4 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 32/131 (24%), Positives = 54/131 (41%)
Query: 220 DLWHRVQALS-SNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHG 278
DL ++ LS N + + +P FE+ V H P+S P +P T
Sbjct: 236 DLLYKQLILSRENDFTFPYISQPWKFFESDFV----H-IVPVS----PSIPEWTFQPT-- 284
Query: 279 KQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVL--LFFNGCRKECAFY 336
Q+++ + + N F ++ D + I + +DV+ L FN R E A
Sbjct: 285 PQQNELP-SFKRFFELFNNFEI-RTTPDASDVAASIFRDISVDVINHLEFN--RVEAAQV 340
Query: 337 MVNLPVPFRYE 347
+ +L V F Y+
Sbjct: 341 LTDLDVYFTYK 351
>UNIPROTKB|G4NH07 [details] [associations]
symbol:MGG_12123 "Cap binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF09088 Pfam:PF09090
SUPFAM:SSF48371 GO:GO:0016070 EMBL:CM001236 Gene3D:1.25.40.180
KO:K12882 PANTHER:PTHR12412 RefSeq:XP_003719884.1
ProteinModelPortal:G4NH07 EnsemblFungi:MGG_12123T0 GeneID:2677427
KEGG:mgr:MGG_12123 Uniprot:G4NH07
Length = 821
Score = 325 (119.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 140/590 (23%), Positives = 254/590 (43%)
Query: 55 EQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMC 114
EQ P K P +V + N + V +++ + + A+ +G ++ L++ L +
Sbjct: 102 EQ-PLKTPFVAAVVLVTNTLKSELVAELLARVGKALETAITAGEWRDVKALLKLLACLQT 160
Query: 115 SKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVP 174
L+ + V + L + A VD + + V IL +P+ A Q
Sbjct: 161 C--LEGEGIFPVLDELFNRA---VDLQTASSDDTIGIEL-VKIILLTIPYIMAAAPGQWI 214
Query: 175 EEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKD--FLEDLWHRVQALSSNG 232
++ +M + S H + + E+G+ VE L L ++Q + NG
Sbjct: 215 DKAAELMDKTDVIAS-EDHPMQKLVDPY--CPEAGEKDVEASPSLLSLLQKQLQTEAGNG 271
Query: 233 WKLDSVPR----PHLSFEAQ--LVSGKSHEFGPISCPE------QPDVPTAVSGITHGKQ 280
W L+ +PR P E Q L H IS PE +P P VS + Q
Sbjct: 272 WGLECLPRAWKMPLEEVEQQSKLDDCPRHPLPTISVPETIIAGSRPLFPE-VSISIYAAQ 330
Query: 281 KHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFF-NGC--RKECAFYM 337
A + I I A ++ +R ++ +L+D+ +F NG ++ F
Sbjct: 331 DV-ASVPPDTTIAASLIRDAILDTINTLHYNRNVVARFLIDLDCYFSNGTFVKRATPFDR 389
Query: 338 V-NLPV---PFRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXX 393
+ ++ ++ E ++ + +FS K ++Y V+ + CK
Sbjct: 390 LRDVEAGKSTWKPEDVVVDAVFSQILQLPRPEHKLVFYHSVLTETCKIAPAAIAPSLGRA 449
Query: 394 XXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLE 453
++ I D+E RFI WFSHHLSNF F W W EW ++LP P + F+ L+
Sbjct: 450 IRHIYRNIPRHDLELNHRFIDWFSHHLSNFGFTWKWVEWVDDVELPALHPLKAFIVGALD 509
Query: 454 REVRLSYWDKVKQSIENAPALEELLPPKGG---PNFKYSMEDGRERSEEHALSAELTNKV 510
+E+RLS+ ++K ++ + + L+ P+ P FKY +D S+ + A L K
Sbjct: 510 KEIRLSFAQRIKNTVPDE--YKSLIGPEKEIDVPEFKYKNDDVPFASQGREI-ANLLKKK 566
Query: 511 KGRQTAREIIVWVEESVYPIHGLG--VTIKVVVQT-LLDIGSKSFTHLITVLERY-GQVI 566
+ + + +I ++ GL VT V T +L +GSKS +H++ +ER +++
Sbjct: 567 EPDEAIQPLIEEIQNGAVD-QGLDPLVTSTDVFMTAVLAVGSKSLSHVLACIERVKDRLL 625
Query: 567 SKICPDHDKQLMLIEEVSLFWKNNTQNAAISI-DRMMGYRLISNLAIVRW 615
++ +IE V +W + Q A+SI ++++ Y +++ +V W
Sbjct: 626 DAGAASVAARIQVIEAVMAYWSAH-QGVALSIVEKLLNYAILTPAVVVEW 674
Score = 305 (112.4 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 84/316 (26%), Positives = 150/316 (47%)
Query: 347 EYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDM 406
E ++ + +FS K ++Y V+ + CK ++ I D+
Sbjct: 403 EDVVVDAVFSQILQLPRPEHKLVFYHSVLTETCKIAPAAIAPSLGRAIRHIYRNIPRHDL 462
Query: 407 ECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQ 466
E RFI WFSHHLSNF F W W EW ++LP P + F+ L++E+RLS+ ++K
Sbjct: 463 ELNHRFIDWFSHHLSNFGFTWKWVEWVDDVELPALHPLKAFIVGALDKEIRLSFAQRIKN 522
Query: 467 SIENAPALEELLPPKGG---PNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWV 523
++ + + L+ P+ P FKY +D S+ + A L K + + + +I +
Sbjct: 523 TVPDE--YKSLIGPEKEIDVPEFKYKNDDVPFASQGREI-ANLLKKKEPDEAIQPLIEEI 579
Query: 524 EESVYPIHGLG--VTIKVVVQT-LLDIGSKSFTHLITVLERY-GQVISKICPDHDKQLML 579
+ GL VT V T +L +GSKS +H++ +ER +++ ++ +
Sbjct: 580 QNGAVD-QGLDPLVTSTDVFMTAVLAVGSKSLSHVLACIERVKDRLLDAGAASVAARIQV 638
Query: 580 IEEVSLFWKNNTQNAAISI-DRMMGYRLISNLAIVRW--------VFSPENIDQFHASDR 630
IE V +W + Q A+SI ++++ Y +++ +V W V + E+ + A D
Sbjct: 639 IEAVMAYWSAH-QGVALSIVEKLLNYAILTPAVVVEWAVGAGRGAVTAIEDDESRLAQDH 697
Query: 631 PWEVLRNAVSKTYNRI 646
+E++ N V K R+
Sbjct: 698 IYELVLNTVRKVTGRV 713
>CGD|CAL0004925 [details] [associations]
symbol:GCR3 species:5476 "Candida albicans" [GO:0006110
"regulation of glycolysis" evidence=IGI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0006397 "mRNA processing" evidence=IGI] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0006970 "response to osmotic stress"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 CGD:CAL0004925 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0006110 GO:GO:0006397 GO:GO:0006357
GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACQ01000177
EMBL:AACQ01000176 eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412
RefSeq:XP_711875.1 RefSeq:XP_711904.1 STRING:Q59QD1 GeneID:3646476
GeneID:3646485 KEGG:cal:CaO19.387 KEGG:cal:CaO19.8017
Uniprot:Q59QD1
Length = 886
Score = 167 (63.8 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 369 IYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWP 428
IYY V++ C+ ++ + LD E +IRF+ W S LSNF+F W
Sbjct: 446 IYYYTVLISCCRESPESIAPVFGRAIRYFYNHLETLDYELKIRFLDWMSIQLSNFEFSWK 505
Query: 429 WEEWAY----VLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQS 467
WEEW + DL K+ P++ F++ ++ +E+RLS ++K S
Sbjct: 506 WEEWVSDSKKLKDL-KYHPKKNFIKNLIAKEIRLSNKKRIKDS 547
Score = 87 (35.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 55 EQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDS--GNC-DRIRILMRFLTV 111
EQ PHKI L+ + N +N K V+E K Q LDS G+ + I+ +++FL+
Sbjct: 96 EQ-PHKISAIANLILICNAKNFVIAKYVIEYLHSKMQTMLDSQEGSVFNDIKNILKFLST 154
Query: 112 MMCSKILQPGSLVVVFETLLSSA 134
+ + I++ ++ +F+ L+ A
Sbjct: 155 L--TPIIEDNGIIQIFKQFLNFA 175
Score = 54 (24.1 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 511 KGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLER 561
K E+ V ES+ + I +++QT IGS+S ++++L R
Sbjct: 644 KSNTDFNELYKSVLESITAPNNERFAINLIIQTYAYIGSRSIYSVVSILSR 694
>UNIPROTKB|Q59QD1 [details] [associations]
symbol:GCR3 "Likely nuclear cap-binding protein large
subunit" species:237561 "Candida albicans SC5314" [GO:0006110
"regulation of glycolysis" evidence=IGI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0006397 "mRNA processing" evidence=IGI] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 CGD:CAL0004925 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0006110 GO:GO:0006397 GO:GO:0006357
GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACQ01000177
EMBL:AACQ01000176 eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412
RefSeq:XP_711875.1 RefSeq:XP_711904.1 STRING:Q59QD1 GeneID:3646476
GeneID:3646485 KEGG:cal:CaO19.387 KEGG:cal:CaO19.8017
Uniprot:Q59QD1
Length = 886
Score = 167 (63.8 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 369 IYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWP 428
IYY V++ C+ ++ + LD E +IRF+ W S LSNF+F W
Sbjct: 446 IYYYTVLISCCRESPESIAPVFGRAIRYFYNHLETLDYELKIRFLDWMSIQLSNFEFSWK 505
Query: 429 WEEWAY----VLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQS 467
WEEW + DL K+ P++ F++ ++ +E+RLS ++K S
Sbjct: 506 WEEWVSDSKKLKDL-KYHPKKNFIKNLIAKEIRLSNKKRIKDS 547
Score = 87 (35.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 55 EQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDS--GNC-DRIRILMRFLTV 111
EQ PHKI L+ + N +N K V+E K Q LDS G+ + I+ +++FL+
Sbjct: 96 EQ-PHKISAIANLILICNAKNFVIAKYVIEYLHSKMQTMLDSQEGSVFNDIKNILKFLST 154
Query: 112 MMCSKILQPGSLVVVFETLLSSA 134
+ + I++ ++ +F+ L+ A
Sbjct: 155 L--TPIIEDNGIIQIFKQFLNFA 175
Score = 54 (24.1 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 511 KGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLER 561
K E+ V ES+ + I +++QT IGS+S ++++L R
Sbjct: 644 KSNTDFNELYKSVLESITAPNNERFAINLIIQTYAYIGSRSIYSVVSILSR 694
>SGD|S000004732 [details] [associations]
symbol:STO1 "Large subunit of the nuclear mRNA cap-binding
protein complex" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006970 "response to osmotic stress" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA;IDA;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 SGD:S000004732
GO:GO:0048471 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677
GO:GO:0003729 GO:GO:0006970 EMBL:BK006946 GO:GO:0005844
GO:GO:0051028 GO:GO:0000398 EMBL:Z49273 GO:GO:0000243
Gene3D:1.25.40.180 GO:GO:0006370 EMBL:Z48622 eggNOG:NOG303489
KO:K12882 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
GO:GO:0005846 EMBL:D10224 EMBL:L07650 EMBL:L27744 PIR:A44919
RefSeq:NP_013844.2 PDB:3UKY PDBsum:3UKY ProteinModelPortal:P34160
DIP:DIP-4434N IntAct:P34160 MINT:MINT-552943 STRING:P34160
PaxDb:P34160 PeptideAtlas:P34160 EnsemblFungi:YMR125W GeneID:855155
KEGG:sce:YMR125W CYGD:YMR125w2 HOGENOM:HOG000066047 OMA:RSLSHAN
OrthoDB:EOG44J5S6 NextBio:978566 Genevestigator:P34160
GermOnline:YMR125W Uniprot:P34160
Length = 861
Score = 148 (57.2 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 49/204 (24%), Positives = 89/204 (43%)
Query: 334 AFYMVNLPVP-FRYEYLMAETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXX 392
A Y N P F+ E L ETI Y+ +++D+C+
Sbjct: 401 ATYEENPLAPTFKIEDLAIETILGLIFKLPSVSQPFAYFYTLLVDICQNSPKAIAPVFGR 460
Query: 393 XXXXLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAY-VLDLPKWA--PQRVFVQ 449
+ + LD E ++R++ WFS +SNF F W W EW + K+ P+ F +
Sbjct: 461 AFRFFYSHLDSLDFELKLRYLDWFSIQMSNFNFSWKWNEWEDDSIKFGKYFYNPKVNFAK 520
Query: 450 EVLEREVRL-SYWDKVKQSI--ENAPALEELLPPKGGP-NFKYSMEDGRERSEEHALSAE 505
++++E+RL S + +V+ S+ E L+ P+ N+ S+ G E+ +
Sbjct: 521 NLIQKELRLTSNFSEVEDSLPQEFTKYLDTSYIPRDQLINYYQSLFTGYTVEEDSVRKND 580
Query: 506 LTNKVKG---RQTAREIIVWVEES 526
L + +G T R+I+ + ++
Sbjct: 581 LYFRQEGVPMENTVRKILDYTHKA 604
Score = 80 (33.2 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 537 IKVVVQTLLDIGSKSFTHL---ITVL-ERYGQVISKICPDHD-KQLMLIEEVSLFWKNNT 591
I ++VQ + D GS+S +H I L E + +KI D + K+ ++IE V FW N
Sbjct: 636 IILLVQAVTDSGSRSLSHANKYINDLKEDLKTIFAKIELDIETKEYIIIEAVLTFWNANP 695
Query: 592 QNAAISIDRMMGYRLISNLAIVRWVFS 618
Q + D L+++ I ++F+
Sbjct: 696 QTGFLVADAFKYAGLLTSRTIFTFIFN 722
Score = 61 (26.5 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 20/96 (20%), Positives = 50/96 (52%)
Query: 70 LLNLENEDFVKKVVETTQRKFQDAL-DSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFE 128
++N E+ K +T +F+ ++G ++I++++RFL+++ S + L+ +++
Sbjct: 114 IINYFFEELQKWCKQTYNDEFKSTSNETGPWNKIKLILRFLSIL--SPMFLVDELINIYK 171
Query: 129 TLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPW 164
+L + + D GN + A Y +L+ +P+
Sbjct: 172 SLFELSIELNNLDPGNRVPLSEA-IYTNTLLN-IPY 205
Score = 48 (22.0 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 811 QWCLST-LGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAV 855
+W T +G++K+ R+Y+ E +K A + + H RR +
Sbjct: 806 KWKYFTVIGFIKSILRRYSHEYRELADKFIANIDNAIPHESTRRTI 851
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 864 809 0.00099 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 635 (67 KB)
Total size of DFA: 445 KB (2211 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.09u 0.12s 67.21t Elapsed: 00:00:03
Total cpu time: 67.10u 0.12s 67.22t Elapsed: 00:00:03
Start: Fri May 10 02:26:48 2013 End: Fri May 10 02:26:51 2013