BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002930
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 258 bits (659), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 183/671 (27%), Positives = 319/671 (47%), Gaps = 65/671 (9%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ ++ S+V
Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 146
Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
+FE +S T +ED Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 147 AMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 199
Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L+
Sbjct: 200 ESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLA 255
Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRL--------- 295
F++ L H P + P + D+ P+ I R+
Sbjct: 256 FDSILCEALQHNLPPFTPPPHTE---------------DSVYPMPRVIFRMFDYTDDPEG 300
Query: 296 NIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMA 351
+ P S S ++RF++EE L ++ RK CA +V+ P +P Y +
Sbjct: 301 PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IV 352
Query: 352 ETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIR 411
E IF+ + YT ++++LCK L+ ++ ++ C R
Sbjct: 353 EVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 412
Query: 412 FILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA 471
FI WFSHHLSNFQF W WE+W+ L +P+ FV+EVLE+ +RLSY ++ +
Sbjct: 413 FINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--P 470
Query: 472 PALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYP-- 529
P L P +KY E H+++ L K + T EI +++ P
Sbjct: 471 PTFSALCPANPTCIYKYGDESSNSLP-GHSVALCLAVAFKSKATNDEIFSILKDVPNPNQ 529
Query: 530 ----IHGLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEE 582
G + I+V VQTLL + +KSF+H + L ++ +V + + +L ++
Sbjct: 530 DDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRV 589
Query: 583 VSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKT 642
+ W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE+L + + K
Sbjct: 590 MFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVWEILHSTIRKM 648
Query: 643 YNRICDLRKEI 653
+ ++KE+
Sbjct: 649 NKHVLKIQKEL 659
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 183/671 (27%), Positives = 319/671 (47%), Gaps = 65/671 (9%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 13 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 67
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ ++ S+V
Sbjct: 68 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 127
Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
+FE +S T +ED Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 128 AMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L+
Sbjct: 181 ESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLA 236
Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRL--------- 295
F++ L H P + P + D+ P+ I R+
Sbjct: 237 FDSILCEALQHNLPPFTPPPHTE---------------DSVYPMPRVIFRMFDYTDDPEG 281
Query: 296 NIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMA 351
+ P S S ++RF++EE L ++ RK CA +V+ P +P Y +
Sbjct: 282 PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IV 333
Query: 352 ETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIR 411
E IF+ + YT ++++LCK L+ ++ ++ C R
Sbjct: 334 EVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 393
Query: 412 FILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA 471
FI WFSHHLSNFQF W WE+W+ L +P+ FV+EVLE+ +RLSY ++ +
Sbjct: 394 FINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--P 451
Query: 472 PALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYP-- 529
P L P +KY E H+++ L K + T EI +++ P
Sbjct: 452 PTFSALCPSNPTCIYKYGDESSNSLP-GHSVALCLAVAFKSKATNDEIFSILKDVPNPNQ 510
Query: 530 ----IHGLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEE 582
G + I+V VQTLL + +KSF+H + L ++ +V + + +L ++
Sbjct: 511 DDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRV 570
Query: 583 VSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKT 642
+ W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE+L + + K
Sbjct: 571 MFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVWEILHSTIRKM 629
Query: 643 YNRICDLRKEI 653
+ ++KE+
Sbjct: 630 NKHVLKIQKEL 640
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 183/671 (27%), Positives = 319/671 (47%), Gaps = 65/671 (9%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 13 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 67
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ ++ S+V
Sbjct: 68 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 127
Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
+FE +S T +ED Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 128 AMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L+
Sbjct: 181 ESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLA 236
Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRL--------- 295
F++ L H P + P + D+ P+ I R+
Sbjct: 237 FDSILCEALQHNLPPFTPPPHTE---------------DSVYPMPRVIFRMFDYTDDPEG 281
Query: 296 NIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMA 351
+ P S S ++RF++EE L ++ RK CA +V+ P +P Y +
Sbjct: 282 PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IV 333
Query: 352 ETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIR 411
E IF+ + YT ++++LCK L+ ++ ++ C R
Sbjct: 334 EVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 393
Query: 412 FILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA 471
FI WFSHHLSNFQF W WE+W+ L +P+ FV+EVLE+ +RLSY ++ +
Sbjct: 394 FINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--P 451
Query: 472 PALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYP-- 529
P L P +KY E H+++ L K + T EI +++ P
Sbjct: 452 PTFSALCPSNPTCIYKYGDESSNSLP-GHSVALCLAVAFKSKATNDEIFSILKDVPNPNQ 510
Query: 530 ----IHGLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEE 582
G + I+V VQTLL + +KSF+H + L ++ +V + + +L ++
Sbjct: 511 DDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRV 570
Query: 583 VSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKT 642
+ W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE+L + + K
Sbjct: 571 MFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVWEILHSTIRKM 629
Query: 643 YNRICDLRKEI 653
+ ++KE+
Sbjct: 630 NKHVLKIQKEL 640
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 253 bits (646), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 181/659 (27%), Positives = 313/659 (47%), Gaps = 65/659 (9%)
Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y
Sbjct: 13 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 67
Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ ++ S+V
Sbjct: 68 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 127
Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
+FE +S T +ED Q R D+YV LS LPW G EL E+ E++R+ A
Sbjct: 128 AMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L+
Sbjct: 181 ESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLA 236
Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRL--------- 295
F++ L H P + P + D+ P+ I R+
Sbjct: 237 FDSILCEALQHNLPPFTPPPHTE---------------DSVYPMPRVIFRMFDYTDDPEG 281
Query: 296 NIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMA 351
+ P S S ++RF++EE L ++ RK CA +V+ P +P Y +
Sbjct: 282 PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IV 333
Query: 352 ETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIR 411
E IF+ + YT ++++LCK L+ ++ ++ C R
Sbjct: 334 EVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 393
Query: 412 FILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA 471
FI WFSHHLSNFQF W WE+W+ L +P+ FV+EVLE+ +RLSY ++ +
Sbjct: 394 FINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--P 451
Query: 472 PALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYP-- 529
P L P +KY E H+++ L K + T EI +++ P
Sbjct: 452 PTFSALCPSNPTCIYKYGDESSNSLP-GHSVALCLAVAFKSKATNDEIFSILKDVPNPNQ 510
Query: 530 ----IHGLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEE 582
G + I+V VQTLL + +KSF+H + L ++ +V + + +L ++
Sbjct: 511 DDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRV 570
Query: 583 VSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSK 641
+ W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE+L + + K
Sbjct: 571 MFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVWEILHSTIRK 628
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 625 FHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVT 661
FH + V+R+A S TYN + ++++++SL GVT
Sbjct: 398 FHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSL--GVT 432
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 625 FHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVT 661
FH + V+R+A S TYN + ++++++SL GVT
Sbjct: 398 FHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSL--GVT 432
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 685 DGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFS 744
DGE V + ++ E K+ K ++ K+A++ + + E + LY+ + N
Sbjct: 501 DGETV-----GTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVDIPENHY 555
Query: 745 NVLMERL 751
++L E+L
Sbjct: 556 HILKEQL 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,374,430
Number of Sequences: 62578
Number of extensions: 973424
Number of successful extensions: 2134
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2099
Number of HSP's gapped (non-prelim): 15
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)