Query 002930
Match_columns 864
No_of_seqs 182 out of 247
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_C 80 kDa nuclear CAP bind 100.0 2E-172 7E-177 1542.7 67.0 745 1-861 9-771 (771)
2 1hu3_A EIF4GII; heat repeat, t 98.3 4.8E-06 1.6E-10 88.5 14.8 173 26-235 25-243 (260)
3 2vso_E Eukaryotic initiation f 98.1 1.8E-05 6.3E-10 85.1 13.6 158 44-234 76-283 (284)
4 3rk6_A Polyadenylate-binding p 97.5 0.00062 2.1E-08 71.2 11.8 135 44-190 59-216 (234)
5 1ug3_A EIF4GI, eukaryotic prot 97.4 0.0061 2.1E-07 67.0 19.7 282 327-616 24-332 (339)
6 3l6a_A Eukaryotic translation 97.2 0.0096 3.3E-07 66.1 18.5 283 323-617 20-338 (364)
7 2i2o_A EIF4G-like protein; pro 97.2 0.0015 5.3E-08 67.8 10.8 158 44-235 37-210 (224)
8 3d3m_A Eukaryotic translation 96.1 0.044 1.5E-06 54.2 12.2 116 502-617 4-142 (168)
9 1paq_A Translation initiation 95.7 0.065 2.2E-06 54.0 11.6 117 500-616 24-154 (189)
10 3jui_A Translation initiation 94.3 0.39 1.3E-05 48.0 12.5 116 501-616 17-146 (182)
11 1uw4_B UPF2, regulator of nons 94.2 0.8 2.7E-05 48.1 15.0 157 27-189 20-187 (248)
12 2ful_A EIF-5, eukaryotic trans 85.2 0.87 3E-05 45.4 5.2 77 534-616 50-130 (177)
13 2iu1_A EIF5, eukaryotic transl 81.7 2.5 8.5E-05 43.2 7.0 76 535-616 44-124 (208)
14 1ic2_A Tropomyosin alpha chain 58.4 57 0.0019 27.9 9.2 22 712-733 51-72 (81)
15 2k48_A Nucleoprotein; viral pr 54.6 1.2E+02 0.0042 27.3 10.8 32 635-666 33-64 (107)
16 1jcd_A Major outer membrane li 51.9 44 0.0015 26.6 6.7 40 635-674 9-48 (52)
17 1h2v_C 80 kDa nuclear CAP bind 50.9 24 0.00082 42.7 7.5 86 27-113 309-402 (771)
18 1fxk_A Prefoldin; archaeal pro 49.7 59 0.002 28.7 8.3 27 636-662 7-33 (107)
19 2l5g_B Putative uncharacterize 48.3 28 0.00097 26.4 4.7 34 635-668 7-40 (42)
20 2zqm_A Prefoldin beta subunit 47.5 1E+02 0.0034 27.6 9.6 26 636-661 12-37 (117)
21 3na7_A HP0958; flagellar bioge 46.1 77 0.0026 32.8 9.7 26 641-666 36-61 (256)
22 3u1c_A Tropomyosin alpha-1 cha 40.2 2E+02 0.0068 25.6 10.7 26 638-663 3-28 (101)
23 3u1c_A Tropomyosin alpha-1 cha 39.7 1.7E+02 0.0057 26.1 9.5 30 645-674 3-32 (101)
24 1ic2_A Tropomyosin alpha chain 33.0 2.3E+02 0.0077 24.1 9.5 17 714-730 46-62 (81)
25 2qk1_A Protein STU2; STU2P, XM 29.9 21 0.00073 36.7 2.2 30 85-114 146-175 (249)
26 2qk2_A LP04448P; mini spindles 26.7 1.7E+02 0.0058 29.0 8.3 31 84-114 132-162 (242)
27 1ik9_A DNA repair protein XRCC 25.5 3.8E+02 0.013 27.1 10.5 18 733-750 170-187 (213)
28 4fi5_A Nucleoprotein; structur 25.3 3.9E+02 0.013 24.4 9.4 27 639-665 24-50 (113)
29 3haj_A Human pacsin2 F-BAR; pa 25.0 6.2E+02 0.021 28.3 13.5 30 633-662 132-161 (486)
30 2l5g_A GPS2 protein, G protein 24.4 85 0.0029 23.2 3.8 25 714-738 13-37 (38)
31 3a7p_A Autophagy protein 16; c 24.3 4.8E+02 0.016 25.1 10.8 35 708-742 102-136 (152)
32 3vkg_A Dynein heavy chain, cyt 23.6 1.8E+02 0.0061 40.9 9.7 41 576-616 1861-1901(3245)
33 2ic6_A Nucleocapsid protein; h 23.0 3.6E+02 0.012 23.1 9.7 25 639-663 7-31 (78)
34 2ic9_A Nucleocapsid protein; h 23.0 4E+02 0.014 23.7 10.2 26 639-664 7-32 (96)
35 2rg8_A Programmed cell death p 22.0 4.2E+02 0.014 25.4 9.7 153 25-204 6-162 (165)
36 3eiq_C Programmed cell death p 20.9 5.1E+02 0.017 28.2 11.1 173 25-223 50-225 (358)
No 1
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=100.00 E-value=2e-172 Score=1542.67 Aligned_cols=745 Identities=28% Similarity=0.517 Sum_probs=675.7
Q ss_pred CCcchhhHhhhccCCCCCCCCCchHhhHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCCchHHHHHHHHHhcCChhHHH
Q 002930 1 MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVK 80 (864)
Q Consensus 1 ~~~~~~li~riGek~~~~~~~ss~e~~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~~~g~ 80 (864)
+++|+++|+|+|||+ ++++++||++|+++|.++++++++.|++++++|+.++|+|+|+||||||++|+++|+||+
T Consensus 9 ~~~l~~lI~rlge~~-----~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~ 83 (771)
T 1h2v_C 9 EDHLESLICKVGEKS-----ACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGG 83 (771)
T ss_dssp -CHHHHHHHTTTSSC-----SSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHH
Confidence 468999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHh
Q 002930 81 KVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILS 160 (864)
Q Consensus 81 ~ive~~~~~lq~~L~~g~w~~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~ 160 (864)
++|++++.+|++++++|+|++||+++||||||+||+|+++++++++|+.|++.+. +.+.+ |+|+|||+||+|+
T Consensus 84 ~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~-----e~~~~--q~r~D~~v~~vL~ 156 (771)
T 1h2v_C 84 EFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQ-----EEDVP--QVRRDWYVYAFLS 156 (771)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGG-----CSSCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhh-----hcCCc--ccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999762 44555 9999999999999
Q ss_pred hhhhccHHhhhhCHHHHHHHHHHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHHHHHHHHhCCCcccCCCC
Q 002930 161 CLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR 240 (864)
Q Consensus 161 ~LP~~G~eL~e~~~e~Le~ll~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ql~~L~~~~W~~~~ipR 240 (864)
+|||+|++|++++++++++||++++.|+++|++.++.++++|.++ .+++++++|++||+||+++++|||+++++||
T Consensus 157 ~Lp~~G~~L~e~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~----~~~~~~~~l~~L~~ql~~lr~~~w~~~~ipr 232 (771)
T 1h2v_C 157 SLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILR 232 (771)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCC----SSCCCCBHHHHHHHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCccchhhhhccccC----CCCchhhHHHHHHHHHHHHHHCCCCCcCCCc
Confidence 999999999999999999999999999999999888899999763 4578899999999999999999999999999
Q ss_pred CcchhhhhhccCCCcCCCCCCCCCCCCCCCCCCCcccCCccccccccCCccccccccccCCCCC-----CCCCchhHHHH
Q 002930 241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSE-----VDMQPIDRFIL 315 (864)
Q Consensus 241 py~~f~~~L~~~~~H~lp~i~~P~~~~~~~~~~~~~~~~~~~~~~~~yP~~~~~frlf~~~~~~-----~~~~~ier~li 315 (864)
||+.|++.|.++.+|+||++++|. |..+..||.|.++||+|++++++ .+.++|||+++
T Consensus 233 p~~~f~~~l~d~~~H~lp~~~~p~-----------------~~~~~~yp~p~~~f~if~~~d~~e~~~~p~~~~idr~l~ 295 (771)
T 1h2v_C 233 PYLAFDSILCEALQHNLPPFTPPP-----------------HTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVI 295 (771)
T ss_dssp GGGGGTTTCCGGGCBCCCCCCCCC-----------------CCTTCCCCCCCBCCCCCCGGGCTTSSCCCCTTSHHHHHH
T ss_pred hhhhccccccccccCCCCCCCCCC-----------------CcccccCCccceeeeccCCccccccccCCCcchHHHHHH
Confidence 999999999999999999999983 23345688888899999987764 26789999999
Q ss_pred HHHHHHHHHhccccHHHHHHHhhcCCC--CCCchhhHHHHHHHHhhcCCCCCCcchhHHHHHHHHHhcCCCCchHHHHHH
Q 002930 316 EEYLLDVLLFFNGCRKECAFYMVNLPV--PFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGA 393 (864)
Q Consensus 316 ee~i~Dii~~f~~nRKecA~~Ll~lp~--t~k~E~~iVEtIfs~lf~LP~p~~~~vYY~slLiELCK~~P~~iapvlgrA 393 (864)
+++++||+.+|++||||||++|+++|. ++++||+||||||++||+||+|+++.+|||+||+||||++|++|||+||+|
T Consensus 296 re~ildIi~~~~~nrkecA~~Ll~l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~a 375 (771)
T 1h2v_C 296 EENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQA 375 (771)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999999999999999984 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhhcccCccccccccccccCCCCCCchHHHHHHHHHHHHhhchhHHHHHhcCCcch
Q 002930 394 VRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPA 473 (864)
Q Consensus 394 ir~ly~~l~~mD~e~~~Rf~dWFS~HLSNF~F~W~W~eW~~~l~l~~~hPk~~Fir~vLeKeiRLSY~~RIk~slP~~~~ 473 (864)
||++|+++++||++|++||++|||||||||+|+|+|++|++|++++..||||+|||++|+||+||||++|||++||+ +
T Consensus 376 i~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fik~ll~k~~RLSy~~rIk~~lP~--~ 453 (771)
T 1h2v_C 376 TEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPP--T 453 (771)
T ss_dssp HHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTSCHHHHHTTSCG--G
T ss_pred HHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHHHHHHHHHHhhhhHHHHHHhCcH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred hhccCCCCCCCCccccCCCCccCchhHHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC---C------chhHHHHHHHHH
Q 002930 474 LEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH---G------LGVTIKVVVQTL 544 (864)
Q Consensus 474 ~~~llP~~p~P~~~y~~e~~~~~~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~---g------~~~~i~vfvq~l 544 (864)
|++++|++|.|+|+|.++++ .+.|+++.|++|.+++|+|++++||+++|++...+.. | ..+++++|+||+
T Consensus 454 ~~~llp~~p~p~f~y~~e~~-~~~p~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~l 532 (771)
T 1h2v_C 454 FSALCPSNPTCIYKYGDESS-NSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTL 532 (771)
T ss_dssp GGGGSCCCCCCCCTTSTTSC-TTSTTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHH
T ss_pred HHhhCCCCCCCCceeCCccc-cCCcchHHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHH
Confidence 99999999999999988753 3468899999999999999999999999997322111 1 127999999999
Q ss_pred HHhccchhhhHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhCCCcchhHHHHhhhccccChhhHHHhhcCcccccc
Q 002930 545 LDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQ 624 (864)
Q Consensus 545 l~~GsKSfSH~~~~iery~~~lk~l~~~~~~q~~il~~v~~~W~~~pQ~~~ivvDkll~~~Iv~p~~Vv~W~F~~~~~~~ 624 (864)
|++|||||||++++|+||+++||++++++++|.+||++|++||++||||+++++||||+|+||+|.+||+|+|+++|.++
T Consensus 533 l~~GskS~SH~~~~lery~~~lk~l~~~~~~q~~il~~v~~~W~~~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~ 612 (771)
T 1h2v_C 533 LHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRD 612 (771)
T ss_dssp HHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTT
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccCchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhhhhHhHHhH
Q 002930 625 FHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHA 704 (864)
Q Consensus 625 ~~~~~~~WEil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (864)
| +++|+||||++||+||++||++++++++++|++++.+++.+.++ + ++++++ +
T Consensus 613 ~-~~~~~weil~~ti~kv~~rv~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~--------~ 665 (771)
T 1h2v_C 613 F-TRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDD-------D-----------DRSSDR--------K 665 (771)
T ss_dssp T-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred H-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------c-----------cccccc--------c
Confidence 7 47999999999999999999999999999999886543222111 0 011111 1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCcccccccccchhhhcccCCccccccc
Q 002930 705 EKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELD 784 (864)
Q Consensus 705 ~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~lfl~~~~~Fi~~L~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (864)
++ +.++++|++|++|++|+++||+||+.+|||||++|++|+++|+++|++
T Consensus 666 ~~------~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~~~~------------------------ 715 (771)
T 1h2v_C 666 DG------VLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTS------------------------ 715 (771)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------------------------
T ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccCCC------------------------
Confidence 33 366889999999999999999999999999999999999999998875
Q ss_pred ccCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCChhhHH--HHHhccCC
Q 002930 785 NENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRR--AVYSGLHR 861 (864)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~g~~~~~~~~~~~~i~~~~~~l~~~~ft~~~~~~~~~--~~~~~~~~ 861 (864)
++++||+|++||||+|+|+|+++|++|++||++++||+|+||+|++ .+|+|||+
T Consensus 716 -----------------------~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~l~~~~f~~~~d~~i~~v~~~f~~l~~ 771 (771)
T 1h2v_C 716 -----------------------VLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 771 (771)
T ss_dssp -----------------------SCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred -----------------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999999999999999 59999996
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=98.34 E-value=4.8e-06 Score=88.50 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHhhhccc---cCcHHHHHHHHHHhCCCCchHHHHHHHHHhc-CCh---------hHHHHHHHHHHHHHHH
Q 002930 26 DHIETCFGVIRRELEHS---SDDVPHYIINCAEQIPHKIPLYGTLVGLLNL-ENE---------DFVKKVVETTQRKFQD 92 (864)
Q Consensus 26 ~~ie~La~~l~~el~~~---~~~il~~l~~cv~e~P~K~p~YAtLVgllN~-kn~---------~~g~~ive~~~~~lq~ 92 (864)
++++.++..|..-.-.. -..+++++++-++..|+.++.||.|+..+|. +-| .|++.+++++..+|+.
T Consensus 25 ~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~~~Fr~~LL~rcq~eFe~ 104 (260)
T 1hu3_A 25 QMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEK 104 (260)
T ss_dssp CCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccchHHHHHHHHHHHHHHhc
Confidence 45666666665432111 1446888888888999999999999999998 333 3899999999999998
Q ss_pred HHhc--------------------------------CCchhHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhcccc
Q 002930 93 ALDS--------------------------------GNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDE 140 (864)
Q Consensus 93 ~L~~--------------------------------g~w~~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~ 140 (864)
.... ...+++...+||+|+|++.+|++..-++.++..|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~------- 177 (260)
T 1hu3_A 105 DKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN------- 177 (260)
T ss_dssp HTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS-------
T ss_pred ccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhCC-------
Confidence 7632 1235677999999999999999999999999998862
Q ss_pred cCCCChhhhhhhHHHHHHHhhhhhccHHhhh-hCHHHHHHHHHHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHH
Q 002930 141 DKGNPSWQARADFYVTCILSCLPWGGAELIE-QVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLE 219 (864)
Q Consensus 141 e~~~~~~q~r~D~~v~~vL~~LP~~G~eL~e-~~~e~Le~ll~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~ 219 (864)
. .+.-+-|++.-|--+|+.|.. ..+..++.++++++..+.... + ...+.
T Consensus 178 ~---------~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~------l---------------s~Rir 227 (260)
T 1hu3_A 178 H---------DEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERK------T---------------SSRIR 227 (260)
T ss_dssp C---------SHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCS------S---------------CHHHH
T ss_pred C---------CHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCC------C---------------CHHHH
Confidence 1 012455566666678999876 345788999999888653210 0 12445
Q ss_pred HHHHHHHHHHhCCCcc
Q 002930 220 DLWHRVQALSSNGWKL 235 (864)
Q Consensus 220 ~Lw~ql~~L~~~~W~~ 235 (864)
.+...+-.||+++|..
T Consensus 228 fmi~~l~dLR~~~W~~ 243 (260)
T 1hu3_A 228 FMLQDVIDLRLCNWVS 243 (260)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5567888999999953
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=98.12 E-value=1.8e-05 Score=85.07 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=114.0
Q ss_pred CcHHHHHHHHHHhCCCCchHHHHHHHHHhcCCh---------------hHHHHHHHHHHHHHHHHHhc------------
Q 002930 44 DDVPHYIINCAEQIPHKIPLYGTLVGLLNLENE---------------DFVKKVVETTQRKFQDALDS------------ 96 (864)
Q Consensus 44 ~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~---------------~~g~~ive~~~~~lq~~L~~------------ 96 (864)
..+++++++-++..|+.++.||.|+..++.+-+ .|++.+++++..+|+.....
T Consensus 76 ~~vi~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e 155 (284)
T 2vso_E 76 KAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLE 155 (284)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC---------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhh
Confidence 347788888899999999999999999987432 26678899999998875311
Q ss_pred ------------CCchhHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHhhhhh
Q 002930 97 ------------GNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPW 164 (864)
Q Consensus 97 ------------g~w~~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~~LP~ 164 (864)
...+++...+||+|+|++.+|++..-++.++..|+... .+.|. +.-+-|++.-|--
T Consensus 156 ~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-------~~~p~-----e~~iE~l~~lL~t 223 (284)
T 2vso_E 156 PEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-------TDSPS-----EETLESVVELLNT 223 (284)
T ss_dssp ---CCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-------HSCCC-----HHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-------CCCCC-----HHHHHHHHHHHHH
Confidence 12456777899999999999999999999999998631 11121 1245555555666
Q ss_pred ccHHhhhhC----------HHHHHHHHHHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHHHHHHHHhC-CC
Q 002930 165 GGAELIEQV----------PEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSN-GW 233 (864)
Q Consensus 165 ~G~eL~e~~----------~e~Le~ll~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ql~~L~~~-~W 233 (864)
+|+.|.... +..++.++++++..+.... ....+-.+...|-.||++ +|
T Consensus 224 vG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~---------------------ls~RirFml~dlidLR~n~~W 282 (284)
T 2vso_E 224 VGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAK---------------------ISSRIKFKLIDIKELRHDKNW 282 (284)
T ss_dssp HHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSC---------------------CCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCC---------------------CCHHHHHHHHHHHHHhcccCC
Confidence 899987665 4578888888887432110 113555566788899997 99
Q ss_pred c
Q 002930 234 K 234 (864)
Q Consensus 234 ~ 234 (864)
.
T Consensus 283 ~ 283 (284)
T 2vso_E 283 N 283 (284)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.00062 Score=71.19 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHhCCCCchHHHHHHHHHhcCC---h---hHHHHHHHHHHHHHHHHH--hcCC---chhHHHHHHHHhhc
Q 002930 44 DDVPHYIINCAEQIPHKIPLYGTLVGLLNLEN---E---DFVKKVVETTQRKFQDAL--DSGN---CDRIRILMRFLTVM 112 (864)
Q Consensus 44 ~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn---~---~~g~~ive~~~~~lq~~L--~~g~---w~~~klllRFLa~L 112 (864)
..+++++++-++..|+.++.||-|...++.+- | .|++.+++++..+|+..- ..++ .+++...+||+|+|
T Consensus 59 ~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgEL 138 (234)
T 3rk6_A 59 QELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGEL 138 (234)
T ss_dssp HHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHH
Confidence 66788888989999999999999999998732 3 499999999999998754 4455 46788899999999
Q ss_pred ccc--------cccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHhhhhhccHHhhh----hCHHHHHHH
Q 002930 113 MCS--------KILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIE----QVPEEIERV 180 (864)
Q Consensus 113 vn~--------~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~~LP~~G~eL~e----~~~e~Le~l 180 (864)
++. ++++..-+...+..|+..... . | .|--+-|+..-|--+|+.|-+ +++..++.+
T Consensus 139 f~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~----~---p-----~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~ 206 (234)
T 3rk6_A 139 YLNLEIKGTNGQVTRADILQVGLRELLNALFS----N---P-----MDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEI 206 (234)
T ss_dssp HHHCCEECTTSSEECCHHHHHHHHHHHHHHHH----S---C-----CHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhhhcccccccchhHHHHHHHHHHHHHHhccC----C---C-----ChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 987 688777666556666543211 1 1 112455555666778998875 567789999
Q ss_pred HHHHHHHHhh
Q 002930 181 MAGLEAYLSI 190 (864)
Q Consensus 181 l~~ie~y~~~ 190 (864)
+++++..+..
T Consensus 207 f~rl~~i~~~ 216 (234)
T 3rk6_A 207 IQRIENVVLD 216 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999986544
No 5
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=97.42 E-value=0.0061 Score=66.97 Aligned_cols=282 Identities=13% Similarity=0.134 Sum_probs=183.9
Q ss_pred cccHHHHHHHhhcCCCCCCchhhHHHHHHHHhhcCCCCCCcchhHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhcCCC--
Q 002930 327 NGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAF-PAVVAGAVRALFDKIAD-- 403 (864)
Q Consensus 327 ~~nRKecA~~Ll~lp~t~k~E~~iVEtIfs~lf~LP~p~~~~vYY~slLiELCK~~P~~i-apvlgrAir~ly~~l~~-- 403 (864)
.++-+|+.+-+..++.+. ..+.+|..++...+.- ...---.=..||..|++. +.+ +.-+.+++..+++.+++
T Consensus 24 ~~d~~Ea~~ci~el~~p~-~~~~~v~~~i~~~le~--~~~~re~~~~Ll~~L~~~--~~is~~~~~~Gf~~~~~~l~Dl~ 98 (339)
T 1ug3_A 24 LNDMKEAVQCVQELASPS-LLFIFVRHGVESTLER--SAIAREHMGQLLHQLLCA--GHLSTAQYYQGLYEILELAEDME 98 (339)
T ss_dssp HCCHHHHHHHHHTTCCGG-GHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHhhChHhh
Confidence 468999999999987654 4556677777777752 221123557788889874 344 45899999999999997
Q ss_pred CcHHHHHH-HHHHHHhhhcccCcc--ccccccccccC-CCCCCchHHHHHHHHHHHHhhchhHHHHHhcCCc-chhhccC
Q 002930 404 LDMECRIR-FILWFSHHLSNFQFI--WPWEEWAYVLD-LPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA-PALEELL 478 (864)
Q Consensus 404 mD~e~~~R-f~dWFS~HLSNF~F~--W~W~eW~~~l~-l~~~hPk~~Fir~vLeKeiRLSY~~RIk~slP~~-~~~~~ll 478 (864)
+|+-.... ++...+.=+++=... +-|+ ..++ +.+.-....|+..++....+---.+++.+.+-.+ -++..++
T Consensus 99 lDiP~a~~~La~~v~~~i~~g~l~~~~l~~---~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~l~~f~ 175 (339)
T 1ug3_A 99 IDIPHVWLYLAELVTPILQEGGVPMGELFR---EITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGLSWKEFL 175 (339)
T ss_dssp TTCTTHHHHHHHHHGGGGSTTSCCHHHHHH---HHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCGGGTS
T ss_pred cCccchHHHHHHHHHHHHHCCCCCHHHHHH---HHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCCHHHhC
Confidence 55544444 444445444441111 1111 1110 1112345799999999998888888887665321 3566778
Q ss_pred CCCCCC-------CccccCCCC--ccC---chhHHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC-CchhHHHHHHHHHH
Q 002930 479 PPKGGP-------NFKYSMEDG--RER---SEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH-GLGVTIKVVVQTLL 545 (864)
Q Consensus 479 P~~p~P-------~~~y~~e~~--~~~---~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~-g~~~~i~vfvq~ll 545 (864)
|+.... ...|..+.. ..+ .+...+-.+|...++.+.++++|+.||++...+.+ ...-.+..++++++
T Consensus 176 P~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~ 255 (339)
T 1ug3_A 176 PEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVC 255 (339)
T ss_dssp CTTCCHHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHH
Confidence 764311 011111100 000 11234567888999999999999999998654221 23466777888887
Q ss_pred Hhc---cchhhhHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhCCC---cchhHHHHhhhccccChhhHHHhh
Q 002930 546 DIG---SKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQ---NAAISIDRMMGYRLISNLAIVRWV 616 (864)
Q Consensus 546 ~~G---sKSfSH~~~~iery~~~lk~l~~~~~~q~~il~~v~~~W~~~pQ---~~~ivvDkll~~~Iv~p~~Vv~W~ 616 (864)
..- ..+.......+.+|.++|+..+.+.+.|+.+|.++..|+.++.+ +..-++..|....||+=.++..|-
T Consensus 256 ~~~~~~~~~~~~~~~~l~~~~pll~~~~~~~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~ 332 (339)
T 1ug3_A 256 YSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWE 332 (339)
T ss_dssp HHTEECSSSCEECHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHT
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 641 12333344689999999999998888999999999999976543 334467899999999999999994
No 6
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=97.22 E-value=0.0096 Score=66.15 Aligned_cols=283 Identities=14% Similarity=0.132 Sum_probs=169.4
Q ss_pred HHhc-cccHHHHHHHhhcCCCCCCchhhHHHHHHHHhhcCCCCCCcchhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 002930 323 LLFF-NGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKI 401 (864)
Q Consensus 323 i~~f-~~nRKecA~~Ll~lp~t~k~E~~iVEtIfs~lf~LP~p~~~~vYY~slLiELCK~~P~~iapvlgrAir~ly~~l 401 (864)
-+|| .++-+|++.-+..+..+-+.-+.+|.-+.+..+. ..+..--.-+.||..||+.. -.-+.-+.+++..+++.+
T Consensus 20 ~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLe--r~~~~re~~~~LL~~L~~~~-~ls~~~~~~Gf~~lle~l 96 (364)
T 3l6a_A 20 TEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLD--RSDEDKEKASSLISLLKQEG-IATSDNFMQAFLNVLDQC 96 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTH
T ss_pred HHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHhhC
Confidence 3444 3678999988877654322334555555555553 12111235577899999852 123468999999999999
Q ss_pred CCCcHH--HHHHH-HHHHHh----hhcccCccccccccccccCCCCCCchHHHHHHHHHHHHhhchhHHHHHhcCC-cch
Q 002930 402 ADLDME--CRIRF-ILWFSH----HLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIEN-APA 473 (864)
Q Consensus 402 ~~mD~e--~~~Rf-~dWFS~----HLSNF~F~W~W~eW~~~l~l~~~hPk~~Fir~vLeKeiRLSY~~RIk~slP~-~~~ 473 (864)
++|-++ .+..+ +..++. .+-.+.+.++. +......| |+-.++....+..-.+.+.+.+-. .-.
T Consensus 97 ~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~------l~~G~~~~---l~l~vl~~~~k~~G~~~l~~l~~~sgl~ 167 (364)
T 3l6a_A 97 PKLEVDIPLVKSYLAQFAARAIISELVSISELAQP------LESGTHFP---LFLLCLQQLAKLQDREWLTELFQQSKVN 167 (364)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHH------HGGGTTTT---HHHHHHHHHHHHSCHHHHHHHHHHHTCC
T ss_pred hHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHH------hcccchHH---HHHHHHHHHHHhcCHHHHHHHHHHcCCC
Confidence 875422 22221 122221 11112222111 11112223 444566666555544444444422 125
Q ss_pred hhccCCCCCCCCc---cccCCCCc-cCchhHHHHHHHHHHhcCCCCHHHHHHHHHhhccCC-CCchhHHHHHHHHHHHhc
Q 002930 474 LEELLPPKGGPNF---KYSMEDGR-ERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPI-HGLGVTIKVVVQTLLDIG 548 (864)
Q Consensus 474 ~~~llP~~p~P~~---~y~~e~~~-~~~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~-~g~~~~i~vfvq~ll~~G 548 (864)
+..++|+...-.. .+..+.+- +-.|...+.++|..+++.+.++.+|++||++.+.+. ..+...|..+|+|+|...
T Consensus 168 l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~~ 247 (364)
T 3l6a_A 168 MQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 247 (364)
T ss_dssp SGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHH
Confidence 6677876321100 00000010 001334677899999999999999999999866433 234567888888888633
Q ss_pred c-----------------chhh-hHHHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHHHhh--CC-CcchhHHHHhhhccc
Q 002930 549 S-----------------KSFT-HLITVLERYGQVISKICPDH-DKQLMLIEEVSLFWKN--NT-QNAAISIDRMMGYRL 606 (864)
Q Consensus 549 s-----------------KSfS-H~~~~iery~~~lk~l~~~~-~~q~~il~~v~~~W~~--~p-Q~~~ivvDkll~~~I 606 (864)
. |.-- -....|.+|..+|+.+..++ +.|..+|.++-.|... +| .+..-++..|....|
T Consensus 248 ~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LYd~Di 327 (364)
T 3l6a_A 248 SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEI 327 (364)
T ss_dssp HHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh
Confidence 1 1111 11357899999999998776 4599999999999964 34 445778889999999
Q ss_pred cChhhHHHhhc
Q 002930 607 ISNLAIVRWVF 617 (864)
Q Consensus 607 v~p~~Vv~W~F 617 (864)
|+=.+|..|-=
T Consensus 328 leEe~il~W~~ 338 (364)
T 3l6a_A 328 IEEEAFLAWKE 338 (364)
T ss_dssp SCHHHHHHHHH
T ss_pred hhhHHHHHHHh
Confidence 99999999974
No 7
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=97.18 E-value=0.0015 Score=67.76 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHHhCCCCchHHHHHHHH-HhcC-----ChhHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHhhcccc
Q 002930 44 DDVPHYIINCAEQIPHKIPLYGTLVGL-LNLE-----NEDFVKKVVETTQRKFQDA--LDSGNCDRIRILMRFLTVMMCS 115 (864)
Q Consensus 44 ~~il~~l~~cv~e~P~K~p~YAtLVgl-lN~k-----n~~~g~~ive~~~~~lq~~--L~~g~w~~~klllRFLa~Lvn~ 115 (864)
..+++++++=|+..|+..+.||-|..- .+.. ...|-+.+++++...|+.- +.....++....+||+|.|...
T Consensus 37 ~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~k~r~lG~i~FIgELf~~ 116 (224)
T 2i2o_A 37 EKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFICNIFDY 116 (224)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 578899999999999999999999984 4432 3347777777777777652 2333467778899999999876
Q ss_pred ----cc--cC-cccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHhhhhhccHHhhhhCHHHHHHHHHHHHH-H
Q 002930 116 ----KI--LQ-PGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEA-Y 187 (864)
Q Consensus 116 ----~V--i~-~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~~LP~~G~eL~e~~~e~Le~ll~~ie~-y 187 (864)
++ +. ..-+...+..|+... +.| .+.-+-|+..-|--+|+.|....+..++.++.+++. .
T Consensus 117 l~~~~~~~~~l~~i~~~cl~~Ll~~~--------~~p-----~Ee~lEcl~~LL~tvG~~Ld~~~~~~md~~f~~l~~~l 183 (224)
T 2i2o_A 117 LKVNNMPMVALVHPVYDCLFRLAQSD--------ALK-----NEEEVDCLVLQLHRIGDQLEKMNVQLMDELFNLLRDGF 183 (224)
T ss_dssp SCBTTBCCGGGHHHHHHHHHHHTSHH--------HHT-----SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcccCcchHHHHHHHHHHHHHHhccC--------CCC-----CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 53 22 223455566665420 111 112455555556668999999889999999999888 4
Q ss_pred HhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHHHHHHHHhCCCcc
Q 002930 188 LSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKL 235 (864)
Q Consensus 188 ~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ql~~L~~~~W~~ 235 (864)
+.... + ...+-.+...+-.||+++|..
T Consensus 184 ~~~~~------l---------------s~RiRfml~dlieLR~~~W~~ 210 (224)
T 2i2o_A 184 LLQED------L---------------SSMGRLLLLEILEFRAGGWKL 210 (224)
T ss_dssp HHCCC------C---------------CHHHHHHHHHHHHHHHTTSCC
T ss_pred hcCcC------C---------------CHHHHHHHHHHHHHHHCCCCC
Confidence 43211 0 023445556888999999964
No 8
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=96.11 E-value=0.044 Score=54.17 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhccCCC-CchhHHHHHHHHHH----Hhcc--chh------------hhHHHHHHHH
Q 002930 502 LSAELTNKVKGRQTAREIIVWVEESVYPIH-GLGVTIKVVVQTLL----DIGS--KSF------------THLITVLERY 562 (864)
Q Consensus 502 ~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~-g~~~~i~vfvq~ll----~~Gs--KSf------------SH~~~~iery 562 (864)
+-++|..+|+...++++|..++++...+++ ...-.+..++++++ ..++ +.. ......|.+|
T Consensus 4 ~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~ 83 (168)
T 3d3m_A 4 LEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSF 83 (168)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHHH
Confidence 457888999999999999999998655433 22334444444444 3222 222 4556889999
Q ss_pred HHHHHhhCCC-hHHHHHHHHHHHHHHhhCCCcc---hhHHHHhhhccccChhhHHHhhc
Q 002930 563 GQVISKICPD-HDKQLMLIEEVSLFWKNNTQNA---AISIDRMMGYRLISNLAIVRWVF 617 (864)
Q Consensus 563 ~~~lk~l~~~-~~~q~~il~~v~~~W~~~pQ~~---~ivvDkll~~~Iv~p~~Vv~W~F 617 (864)
..+|+.++.+ ...|..+|.++-.|...+++.. ..++..|....||+=.+|..|-=
T Consensus 84 ~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~ 142 (168)
T 3d3m_A 84 KPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKE 142 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHh
Confidence 9999999975 7899999999999998776543 45778889999999999999974
No 9
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=95.71 E-value=0.065 Score=54.03 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC-CchhHHHHHHHHHHHh-------ccc-hhhhHHHHHHHHHHHHHhhC
Q 002930 500 HALSAELTNKVKGRQTAREIIVWVEESVYPIH-GLGVTIKVVVQTLLDI-------GSK-SFTHLITVLERYGQVISKIC 570 (864)
Q Consensus 500 ~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~-g~~~~i~vfvq~ll~~-------GsK-SfSH~~~~iery~~~lk~l~ 570 (864)
+.+...|...++.+.+.++++-.|++.-...+ ...-.+..++.+++.. +.. ....+...|.+|+.+|+.++
T Consensus 24 ~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~~~~ 103 (189)
T 1paq_A 24 KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQA 103 (189)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGGTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999999876322222 2233455555555522 222 44556788999999999999
Q ss_pred CChHHHHHHHHHHHHHHh--hCCCc---chhHHHHhhhccccChhhHHHhh
Q 002930 571 PDHDKQLMLIEEVSLFWK--NNTQN---AAISIDRMMGYRLISNLAIVRWV 616 (864)
Q Consensus 571 ~~~~~q~~il~~v~~~W~--~~pQ~---~~ivvDkll~~~Iv~p~~Vv~W~ 616 (864)
.+...|..+|.++-.|.. ++|.. ...|+..|....||+=.+|+.|-
T Consensus 104 ~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~ 154 (189)
T 1paq_A 104 FDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWW 154 (189)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHH
Confidence 888899999999999998 88883 44568899999999999999995
No 10
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=94.31 E-value=0.39 Score=48.04 Aligned_cols=116 Identities=12% Similarity=0.258 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhccCCC-CchhHHHHHHHHHHHhc-----c-----chhhhHHHHHHHHHHHHHhh
Q 002930 501 ALSAELTNKVKGRQTAREIIVWVEESVYPIH-GLGVTIKVVVQTLLDIG-----S-----KSFTHLITVLERYGQVISKI 569 (864)
Q Consensus 501 ~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~-g~~~~i~vfvq~ll~~G-----s-----KSfSH~~~~iery~~~lk~l 569 (864)
.+...|...++.+.+.+.++-.|+..-...+ ...-++..++.+++... + .-..-+...|.+|+++|+.+
T Consensus 17 Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~~~ 96 (182)
T 3jui_A 17 EVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNY 96 (182)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888877765322222 22356667777777652 1 11224557889999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCc---chhHHHHhhhccccChhhHHHhh
Q 002930 570 CPDHDKQLMLIEEVSLFWKNNTQN---AAISIDRMMGYRLISNLAIVRWV 616 (864)
Q Consensus 570 ~~~~~~q~~il~~v~~~W~~~pQ~---~~ivvDkll~~~Iv~p~~Vv~W~ 616 (864)
+.+...|..+|.++-.|...+++. ...++..|....||+=.+|+.|-
T Consensus 97 ~~~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~ 146 (182)
T 3jui_A 97 IKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWF 146 (182)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHH
Confidence 998899999999999999888864 44578888999999999999997
No 11
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=94.20 E-value=0.8 Score=48.06 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCC-----chHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhcCCch-
Q 002930 27 HIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK-----IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCD- 100 (864)
Q Consensus 27 ~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K-----~p~YAtLVgllN~kn~~~g~~ive~~~~~lq~~L~~g~w~- 100 (864)
+++.....|++ ++=....+.+.+.+|-+. |.| +|..|.|+.=+....++||-.||+.+.+.++..|+.+++.
T Consensus 20 ~~~~vlk~lrK-l~W~D~e~~~~l~k~l~~-~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n~~~~ 97 (248)
T 1uw4_B 20 TTEKVLRQMRK-LPWQDQEVKDYVICCMIN-IWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKF 97 (248)
T ss_dssp SHHHHHHHHHT-SCTTSHHHHHHHHHHHHC-GGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred cHHHHHHHHHc-CCCCcHHHHHHHHHHhcc-hhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHHHHHHHHhcCcHHH
Confidence 34444444432 333233456777777653 444 6788999998888999999999999999999999987642
Q ss_pred --hHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhc--ccccCCCChhhhhhhHHHHHHHhhhhhccHHhhh-hCHH
Q 002930 101 --RIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATT--VDEDKGNPSWQARADFYVTCILSCLPWGGAELIE-QVPE 175 (864)
Q Consensus 101 --~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~--~~~e~~~~~~q~r~D~~v~~vL~~LP~~G~eL~e-~~~e 175 (864)
+--..+||||.|.|.++++..-++..+-.|+.....+ ...+.+.|.---| +.+|..-|--+|..+.. ....
T Consensus 98 nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FR----IrLvCtLL~tcg~~f~~~~~~k 173 (248)
T 1uw4_B 98 NQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFR----IRLVCTILDTCGQYFDRGSSKR 173 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHH----HHHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchh----HHHHHHHHHHHHHHhcchhhHH
Confidence 3345789999999999999999999988888742110 0001111111111 22222222233433221 1235
Q ss_pred HHHHHHHHHHHHHh
Q 002930 176 EIERVMAGLEAYLS 189 (864)
Q Consensus 176 ~Le~ll~~ie~y~~ 189 (864)
-|+..|..++-|+-
T Consensus 174 kLd~fL~ffQ~Y~~ 187 (248)
T 1uw4_B 174 KLDCFLVYFQRYVW 187 (248)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 68889999999974
No 12
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=85.17 E-value=0.87 Score=45.39 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHh-hCCCcc---hhHHHHhhhccccCh
Q 002930 534 GVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWK-NNTQNA---AISIDRMMGYRLISN 609 (864)
Q Consensus 534 ~~~i~vfvq~ll~~GsKSfSH~~~~iery~~~lk~l~~~~~~q~~il~~v~~~W~-~~pQ~~---~ivvDkll~~~Iv~p 609 (864)
.-++.+++++|+. .-+...|.+|..+|+.++.+...|..+|.++-.|-. +++..+ ..|+..|....||+=
T Consensus 50 ~~~~~vl~~~lf~------~~i~~~l~k~~~lL~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleE 123 (177)
T 2ful_A 50 PKIGCVLAQCLFD------EDIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISE 123 (177)
T ss_dssp TTHHHHHHHHSCS------TTHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCH
T ss_pred hHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhh
Confidence 4577888898773 235678999999999999888899999999999994 777643 445788999999999
Q ss_pred hhHHHhh
Q 002930 610 LAIVRWV 616 (864)
Q Consensus 610 ~~Vv~W~ 616 (864)
.+|+.|-
T Consensus 124 eaIl~W~ 130 (177)
T 2ful_A 124 EEIMRFG 130 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999996
No 13
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=81.66 E-value=2.5 Score=43.18 Aligned_cols=76 Identities=13% Similarity=0.299 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHHHhhCC----CcchhHHHHhhhccccCh
Q 002930 535 VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICP-DHDKQLMLIEEVSLFWKNNT----QNAAISIDRMMGYRLISN 609 (864)
Q Consensus 535 ~~i~vfvq~ll~~GsKSfSH~~~~iery~~~lk~l~~-~~~~q~~il~~v~~~W~~~p----Q~~~ivvDkll~~~Iv~p 609 (864)
....+++|+|+ + ..+...|.+|..+|+.++. +...|..+|.++-.|...+. .+...|+..|....||+=
T Consensus 44 ~~~~vl~e~lf--~----~~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleE 117 (208)
T 2iu1_A 44 MGPLVLTEVLF--N----EKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEE 117 (208)
T ss_dssp GHHHHHHHHHC--S----TTHHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhh
Confidence 34456778876 2 2566889999999999996 66889999999999876543 345567899999999999
Q ss_pred hhHHHhh
Q 002930 610 LAIVRWV 616 (864)
Q Consensus 610 ~~Vv~W~ 616 (864)
.+|+.|-
T Consensus 118 EaIl~W~ 124 (208)
T 2iu1_A 118 EVIISWS 124 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999995
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.39 E-value=57 Score=27.91 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002930 712 ISAKESLEAKEALFARAVEENE 733 (864)
Q Consensus 712 ~~~~~~~e~~~~~l~~a~~eqk 733 (864)
+.+++.++..++.|..|+....
T Consensus 51 q~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 51 KGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777766665543
No 15
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=54.63 E-value=1.2e+02 Score=27.32 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 002930 635 LRNAVSKTYNRICDLRKEIISLKKGVTLAEEA 666 (864)
Q Consensus 635 l~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~ 666 (864)
.-.+|.++..-+....++|..++.|+..|+++
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666554333
No 16
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.94 E-value=44 Score=26.55 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002930 635 LRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAEL 674 (864)
Q Consensus 635 l~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 674 (864)
|.+=|..++..|.++..++.++|..+..+.+.+++|-..+
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777888888888888888887766666666665555
No 17
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=50.86 E-value=24 Score=42.74 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhhhc-cccCcHHHHHHHHHHhC-------CCCchHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhcCC
Q 002930 27 HIETCFGVIRRELE-HSSDDVPHYIINCAEQI-------PHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGN 98 (864)
Q Consensus 27 ~ie~La~~l~~el~-~~~~~il~~l~~cv~e~-------P~K~p~YAtLVgllN~kn~~~g~~ive~~~~~lq~~L~~g~ 98 (864)
|-+.||..|.. ++ +..-.+...++.|+..+ |+|.-+|++|+.=+..-+|..-..++.++++.+=+.+++-+
T Consensus 309 nrkecA~~Ll~-l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md 387 (771)
T 1h2v_C 309 ERKTCAAQLVS-YPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMN 387 (771)
T ss_dssp CHHHHHHHHHT-CCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBC
T ss_pred CHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccC
Confidence 44566666664 33 22346899999999999 99999999999999888888888888888888888888888
Q ss_pred chhHHHHHHHHhhcc
Q 002930 99 CDRIRILMRFLTVMM 113 (864)
Q Consensus 99 w~~~klllRFLa~Lv 113 (864)
-.-.+.++.|+|++.
T Consensus 388 ~e~~~Rf~dwFShhL 402 (771)
T 1h2v_C 388 TTCVDRFINWFSHHL 402 (771)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888874
No 18
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.70 E-value=59 Score=28.68 Aligned_cols=27 Identities=0% Similarity=-0.043 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 002930 636 RNAVSKTYNRICDLRKEIISLKKGVTL 662 (864)
Q Consensus 636 ~~ti~kv~~rv~~~~~~l~~~~~~~~~ 662 (864)
-+.+.+.+.++..+..++..++..+..
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665443
No 19
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.31 E-value=28 Score=26.35 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 002930 635 LRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAA 668 (864)
Q Consensus 635 l~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~ 668 (864)
|-.-|+||..-|.+.+.++.++++++...+++++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456889999999999999999998877665553
No 20
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.48 E-value=1e+02 Score=27.59 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhh
Q 002930 636 RNAVSKTYNRICDLRKEIISLKKGVT 661 (864)
Q Consensus 636 ~~ti~kv~~rv~~~~~~l~~~~~~~~ 661 (864)
-+.+...+.++..+..++..++..+.
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~ 37 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELT 37 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.07 E-value=77 Score=32.78 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHH
Q 002930 641 KTYNRICDLRKEIISLKKGVTLAEEA 666 (864)
Q Consensus 641 kv~~rv~~~~~~l~~~~~~~~~~~~~ 666 (864)
.+...+..++.++.+++..+...+..
T Consensus 36 ~le~~~~~l~~~~~~~~~~l~d~~~~ 61 (256)
T 3na7_A 36 KALNDKEAKNKAILNLEEEKLALKLQ 61 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333333
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=40.17 E-value=2e+02 Score=25.57 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhHH
Q 002930 638 AVSKTYNRICDLRKEIISLKKGVTLA 663 (864)
Q Consensus 638 ti~kv~~rv~~~~~~l~~~~~~~~~~ 663 (864)
|++++...+..++.+...+..+.+.+
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~ 28 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444443333
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.70 E-value=1.7e+02 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002930 645 RICDLRKEIISLKKGVTLAEEAAAKAKAEL 674 (864)
Q Consensus 645 rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 674 (864)
.+..+++++..+|-..+.+...+..+..++
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~ 32 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADK 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777776665555554444444
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.03 E-value=2.3e+02 Score=24.07 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002930 714 AKESLEAKEALFARAVE 730 (864)
Q Consensus 714 ~~~~~e~~~~~l~~a~~ 730 (864)
++..+..+++.|+.+.+
T Consensus 46 L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 46 LQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=29.88 E-value=21 Score=36.66 Aligned_cols=30 Identities=3% Similarity=-0.025 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHhhccc
Q 002930 85 TTQRKFQDALDSGNCDRIRILMRFLTVMMC 114 (864)
Q Consensus 85 ~~~~~lq~~L~~g~w~~~klllRFLa~Lvn 114 (864)
.+...+-.+|++.+|..=...+.||+.+..
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 444555566677788666677788887754
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=26.67 E-value=1.7e+02 Score=28.96 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhccc
Q 002930 84 ETTQRKFQDALDSGNCDRIRILMRFLTVMMC 114 (864)
Q Consensus 84 e~~~~~lq~~L~~g~w~~~klllRFLa~Lvn 114 (864)
+.++..+...++..+|.-=...+.+|+.+..
T Consensus 132 ~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 132 EAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3455566677777888777778889888643
No 27
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.46 E-value=3.8e+02 Score=27.10 Aligned_cols=18 Identities=50% Similarity=0.648 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002930 733 EALYLSLYRNFSNVLMER 750 (864)
Q Consensus 733 k~lfl~~~~~Fi~~L~e~ 750 (864)
++.=..+|++|+.+|.|.
T Consensus 170 ~~~E~~L~~KF~~lLNeK 187 (213)
T 1ik9_A 170 EALETDLYKRFILVLNEK 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333345667777777654
No 28
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.29 E-value=3.9e+02 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 002930 639 VSKTYNRICDLRKEIISLKKGVTLAEE 665 (864)
Q Consensus 639 i~kv~~rv~~~~~~l~~~~~~~~~~~~ 665 (864)
|.++..-+....++|..++.|+..|++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~ 50 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK 50 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666654433
No 29
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.99 E-value=6.2e+02 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 002930 633 EVLRNAVSKTYNRICDLRKEIISLKKGVTL 662 (864)
Q Consensus 633 Eil~~ti~kv~~rv~~~~~~l~~~~~~~~~ 662 (864)
--+...+.|+.+.+....+++..+|++-..
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~ 161 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHA 161 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666665443
No 30
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.40 E-value=85 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002930 714 AKESLEAKEALFARAVEENEALYLS 738 (864)
Q Consensus 714 ~~~~~e~~~~~l~~a~~eqk~lfl~ 738 (864)
+.+++..++++|++.+.|--.||+.
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7788999999999999999999986
No 31
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.35 E-value=4.8e+02 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002930 708 KNEEISAKESLEAKEALFARAVEENEALYLSLYRN 742 (864)
Q Consensus 708 ~~~~~~~~~~~e~~~~~l~~a~~eqk~lfl~~~~~ 742 (864)
.||-.+++-++..+++++..++.|.+.|.=+.+++
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556688888899999999999999887776554
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.55 E-value=1.8e+02 Score=40.94 Aligned_cols=41 Identities=2% Similarity=0.054 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHhhhccccChhhHHHhh
Q 002930 576 QLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWV 616 (864)
Q Consensus 576 q~~il~~v~~~W~~~pQ~~~ivvDkll~~~Iv~p~~Vv~W~ 616 (864)
+..+++....+...-.++..-...++-++..|+|++-.+++
T Consensus 1861 ~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli 1901 (3245)
T 3vkg_A 1861 RDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFI 1901 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHH
Confidence 45566665555555444444555666788889998888876
No 33
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.05 E-value=3.6e+02 Score=23.13 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHH
Q 002930 639 VSKTYNRICDLRKEIISLKKGVTLA 663 (864)
Q Consensus 639 i~kv~~rv~~~~~~l~~~~~~~~~~ 663 (864)
|.++..-+.....+|..++.|+..|
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA 31 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDA 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566666555444
No 34
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.00 E-value=4e+02 Score=23.68 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHH
Q 002930 639 VSKTYNRICDLRKEIISLKKGVTLAE 664 (864)
Q Consensus 639 i~kv~~rv~~~~~~l~~~~~~~~~~~ 664 (864)
|.++..-+....++|..++.|+..|+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666655443
No 35
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.98 E-value=4.2e+02 Score=25.43 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=77.9
Q ss_pred HhhHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCCchHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 002930 25 KDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRI 104 (864)
Q Consensus 25 e~~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~~~g~~ive~~~~~lq~~L~~g~w~~~kl 104 (864)
++.+++-+..|..||=+.++ ++-...|+.++. .| .-.+.|.+.+|+. ++++++ .+-..
T Consensus 6 ~ee~~kk~~~ii~EYf~~~D--~~Ea~~~l~eL~--~p----------~~~~~~V~~~I~~-------aldrk~-~ere~ 63 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHGD--TNEVAEMLRDLN--LG----------EMKSGVPVLAVSL-------ALEGKA-SHREM 63 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHT--CS----------GGGGHHHHHHHHH-------HHTSCH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHhC--Cc----------ccHHHHHHHHHHH-------HHcCCH-HHHHH
Confidence 57777777777777744432 456667887743 11 1244455555443 455543 23347
Q ss_pred HHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCC-hhhhhhhHHHHHHHhhh-hh--ccHHhhhhCHHHHHHH
Q 002930 105 LMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNP-SWQARADFYVTCILSCL-PW--GGAELIEQVPEEIERV 180 (864)
Q Consensus 105 llRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~-~~q~r~D~~v~~vL~~L-P~--~G~eL~e~~~e~Le~l 180 (864)
+.++|++|.. ++++++.+..=|..+++.+-+. .-+.| .++.=+.++..+|...+ |- +...+..-..+.-.+.
T Consensus 64 ~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl---~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~~~ 139 (165)
T 2rg8_A 64 TSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPEL---ALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAA 139 (165)
T ss_dssp HHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHH---HHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhh---cccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHHHH
Confidence 7889999954 9999999999888888765221 11233 12333445555554433 32 2221111112233445
Q ss_pred HHHHHHHHhhcccCCCCCcccccC
Q 002930 181 MAGLEAYLSIRRHTSDTGLSFFEE 204 (864)
Q Consensus 181 l~~ie~y~~~R~~~~~~ll~~~~~ 204 (864)
+...+.++ ..+|....+.+.|..
T Consensus 140 l~~a~~ll-~~~~~~~~~~~~Wg~ 162 (165)
T 2rg8_A 140 LDKATVLL-SMSKGGKRKDSVWGS 162 (165)
T ss_dssp HHHHHHHH-HTC------------
T ss_pred HHHHHHHH-hccccHHHHHhhcCC
Confidence 66667877 444566677788854
No 36
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.89 E-value=5.1e+02 Score=28.20 Aligned_cols=173 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCCchHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 002930 25 KDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRI 104 (864)
Q Consensus 25 e~~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~~~g~~ive~~~~~lq~~L~~g~w~~~kl 104 (864)
++.+++.+..|..|+=+.++. +-...|+.++.. ...++.|.+.+|.... ...=.+-.+
T Consensus 50 ~ee~~k~~~~ii~EYf~~~d~--~Ea~~~l~eL~~------------p~~~~~~v~~~I~~aL--------dr~~~erE~ 107 (358)
T 3eiq_C 50 ETAFEKTLTPIIQEYFEHGDT--NEVAEMLRDLNL------------GEMKSGVPVLAVSLAL--------EGKASHREM 107 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHCCH--HHHHHHHHTTTC------------CGGGGGHHHHHHHHHT--------TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhCC------------chhHHHHHHHHHHHHh--------cCChHHHHH
Q ss_pred HHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHH---HhhhhhccHHhhhhCHHHHHHHH
Q 002930 105 LMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCI---LSCLPWGGAELIEQVPEEIERVM 181 (864)
Q Consensus 105 llRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~v---L~~LP~~G~eL~e~~~e~Le~ll 181 (864)
+.++|++|. .++++++.+..=|..+++.+-+..-.-...+ +.=+-++..+| +..+-|+....-.-..+.-...+
T Consensus 108 ~s~LLs~L~-~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~--~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l 184 (358)
T 3eiq_C 108 TSKLLSDLC-GTVMSTNDVEKSFDKLLKDLPELALDTPRAP--QLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAAL 184 (358)
T ss_dssp HHHHHHTTT-TTSCCHHHHHHHHHHHHHTHHHHHHHCTTHH--HHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhhhccccccHH--HHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHH
Q ss_pred HHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHH
Q 002930 182 AGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWH 223 (864)
Q Consensus 182 ~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ 223 (864)
.+.+.|+ +.+|....+.++|....+.......+.....+..
T Consensus 185 ~~a~~~L-~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~ 225 (358)
T 3eiq_C 185 DKATVLL-SMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLK 225 (358)
T ss_dssp HHHHHHH-TC---------CCCCCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hccchHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Done!