Query 002932
Match_columns 864
No_of_seqs 448 out of 3057
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00192 aldehyde oxidase 100.0 3E-172 6E-177 1616.1 80.0 832 11-863 3-838 (1344)
2 TIGR02969 mam_aldehyde_ox alde 100.0 3E-167 7E-172 1569.0 75.2 789 13-863 2-823 (1330)
3 KOG0430 Xanthine dehydrogenase 100.0 5E-167 1E-171 1454.9 62.9 775 12-863 1-783 (1257)
4 PLN02906 xanthine dehydrogenas 100.0 3E-164 8E-169 1543.1 74.8 774 31-863 1-818 (1319)
5 COG4630 XdhA Xanthine dehydrog 100.0 6E-114 1E-118 906.5 31.6 470 11-550 6-482 (493)
6 TIGR02963 xanthine_xdhA xanthi 100.0 5E-111 1E-115 962.7 48.8 458 14-545 1-466 (467)
7 PRK09800 putative hypoxanthine 100.0 1.1E-91 2.3E-96 858.1 40.9 420 12-863 1-467 (956)
8 TIGR03311 Se_dep_Molyb_1 selen 100.0 2.6E-89 5.7E-94 833.2 40.5 408 14-863 1-416 (848)
9 TIGR03313 Se_sel_red_Mo probab 100.0 2.8E-89 6E-94 837.7 39.7 416 16-863 1-463 (951)
10 PRK09971 xanthine dehydrogenas 100.0 2.8E-55 6.1E-60 477.1 27.3 274 242-549 6-286 (291)
11 TIGR03193 4hydroxCoAred 4-hydr 100.0 2.3E-55 5E-60 422.3 16.7 147 14-184 2-148 (148)
12 PRK09908 xanthine dehydrogenas 100.0 1.8E-54 3.8E-59 420.3 17.6 151 11-184 6-156 (159)
13 TIGR02965 xanthine_xdhB xanthi 100.0 2E-53 4.3E-58 515.8 25.0 251 604-863 1-251 (758)
14 COG2080 CoxS Aerobic-type carb 100.0 1.1E-53 2.5E-58 409.3 16.1 152 11-185 1-152 (156)
15 TIGR03198 pucE xanthine dehydr 100.0 1.6E-53 3.4E-58 413.2 16.2 149 12-185 2-150 (151)
16 TIGR03195 4hydrxCoA_B 4-hydrox 100.0 4.4E-52 9.6E-57 453.1 27.7 274 240-547 4-320 (321)
17 TIGR03196 pucD xanthine dehydr 100.0 8.5E-53 1.8E-57 509.8 24.5 249 603-863 2-257 (768)
18 TIGR03199 pucC xanthine dehydr 100.0 5E-52 1.1E-56 446.1 25.2 258 246-540 1-263 (264)
19 PRK09970 xanthine dehydrogenas 100.0 3.6E-52 7.8E-57 505.4 23.6 252 603-863 2-268 (759)
20 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 7.5E-52 1.6E-56 500.7 23.5 247 608-863 1-254 (746)
21 PRK11433 aldehyde oxidoreducta 100.0 9.9E-52 2.2E-56 419.4 17.7 162 11-185 49-214 (217)
22 COG4631 XdhB Xanthine dehydrog 100.0 6E-51 1.3E-55 444.3 19.0 252 602-863 17-268 (781)
23 TIGR02416 CO_dehy_Mo_lg carbon 100.0 3.1E-50 6.7E-55 488.7 23.5 244 612-863 1-266 (770)
24 COG1319 CoxM Aerobic-type carb 100.0 2.5E-49 5.4E-54 421.4 21.8 273 240-549 3-282 (284)
25 PRK09799 putative oxidoreducta 100.0 4.7E-48 1E-52 412.8 24.5 250 242-549 4-254 (258)
26 TIGR03312 Se_sel_red_FAD proba 100.0 3.9E-47 8.3E-52 405.3 24.6 251 241-549 2-253 (257)
27 PF00941 FAD_binding_5: FAD bi 100.0 2.5E-38 5.3E-43 318.6 11.4 165 240-421 2-171 (171)
28 COG1529 CoxL Aerobic-type carb 100.0 2.8E-37 6.1E-42 372.9 22.1 254 601-864 3-259 (731)
29 PF01799 Fer2_2: [2Fe-2S] bind 100.0 4.3E-31 9.3E-36 227.0 6.5 75 95-182 1-75 (75)
30 PF01315 Ald_Xan_dh_C: Aldehyd 99.9 2.1E-28 4.6E-33 228.8 6.1 107 618-729 1-110 (111)
31 PF02738 Ald_Xan_dh_C2: Molybd 99.9 6.2E-22 1.3E-26 234.4 11.1 108 754-863 17-124 (547)
32 PF03450 CO_deh_flav_C: CO deh 99.7 1.5E-17 3.3E-22 153.7 12.8 101 439-546 2-103 (103)
33 PRK12386 fumarate reductase ir 99.2 4.4E-11 9.4E-16 127.2 8.2 69 21-101 20-93 (251)
34 PRK05950 sdhB succinate dehydr 98.7 2.2E-08 4.7E-13 106.2 6.2 69 21-101 18-91 (232)
35 TIGR00384 dhsB succinate dehyd 98.6 4.5E-08 9.8E-13 103.0 5.2 69 21-101 15-87 (220)
36 PRK12576 succinate dehydrogena 98.5 1.6E-07 3.5E-12 102.0 6.7 70 21-101 25-100 (279)
37 PF13085 Fer2_3: 2Fe-2S iron-s 98.4 8.5E-07 1.9E-11 82.6 7.8 70 21-101 19-94 (110)
38 PRK12385 fumarate reductase ir 98.2 1.2E-06 2.7E-11 93.4 4.6 68 21-101 25-96 (244)
39 PF13510 Fer2_4: 2Fe-2S iron-s 98.1 1E-05 2.2E-10 71.7 7.5 70 12-96 2-80 (82)
40 cd00207 fer2 2Fe-2S iron-sulfu 98.0 9.5E-06 2.1E-10 71.7 5.2 69 14-85 1-77 (84)
41 COG1529 CoxL Aerobic-type carb 98.0 3.7E-07 7.9E-12 111.8 -5.8 223 595-861 176-409 (731)
42 PRK08493 NADH dehydrogenase su 97.9 1.5E-05 3.2E-10 97.9 7.2 97 13-127 1-102 (819)
43 PRK12577 succinate dehydrogena 97.9 0.00014 3.1E-09 81.1 13.3 70 21-101 19-101 (329)
44 PRK13552 frdB fumarate reducta 97.8 2E-05 4.4E-10 83.8 5.4 69 21-101 24-96 (239)
45 PRK08640 sdhB succinate dehydr 97.8 3.2E-05 7E-10 82.8 6.9 68 21-101 23-101 (249)
46 PRK07570 succinate dehydrogena 97.7 3.4E-05 7.3E-10 82.6 4.9 70 21-100 20-103 (250)
47 PF00111 Fer2: 2Fe-2S iron-sul 97.7 4.9E-05 1.1E-09 66.4 5.0 47 16-64 1-48 (78)
48 COG0479 FrdB Succinate dehydro 97.7 5.5E-05 1.2E-09 79.4 5.8 69 21-101 20-92 (234)
49 PRK12575 succinate dehydrogena 97.6 8E-05 1.7E-09 79.0 5.8 68 21-101 23-94 (235)
50 PRK12814 putative NADPH-depend 97.6 0.00012 2.5E-09 89.3 7.4 92 13-125 3-101 (652)
51 PLN00129 succinate dehydrogena 97.5 0.00011 2.3E-09 79.6 4.9 68 22-101 63-135 (276)
52 PRK07569 bidirectional hydroge 97.5 0.0003 6.6E-09 74.8 8.2 96 13-128 3-107 (234)
53 PRK06259 succinate dehydrogena 97.3 0.0019 4E-08 76.3 12.1 64 21-97 21-88 (486)
54 PRK14653 UDP-N-acetylenolpyruv 96.9 0.0088 1.9E-07 65.8 11.9 138 234-400 27-165 (297)
55 PF01565 FAD_binding_4: FAD bi 96.7 0.0025 5.3E-08 61.8 5.8 106 242-367 3-109 (139)
56 PRK13905 murB UDP-N-acetylenol 96.6 0.011 2.4E-07 65.3 10.2 160 235-422 25-191 (298)
57 PRK10713 2Fe-2S ferredoxin Yfa 96.5 0.0049 1.1E-07 54.9 5.8 47 13-63 3-49 (84)
58 TIGR02008 fdx_plant ferredoxin 96.3 0.0078 1.7E-07 55.1 6.0 48 13-63 4-52 (97)
59 CHL00134 petF ferredoxin; Vali 96.3 0.0091 2E-07 54.9 6.4 48 13-63 5-54 (99)
60 PRK07860 NADH dehydrogenase su 96.3 0.0054 1.2E-07 76.6 6.0 103 12-130 3-112 (797)
61 COG0277 GlcD FAD/FMN-containin 96.1 0.011 2.4E-07 68.8 7.5 108 241-367 33-140 (459)
62 PRK14650 UDP-N-acetylenolpyruv 96.1 0.055 1.2E-06 59.6 12.1 162 233-421 25-192 (302)
63 PRK14652 UDP-N-acetylenolpyruv 96.0 0.025 5.3E-07 62.6 9.1 162 234-422 29-194 (302)
64 PRK11230 glycolate oxidase sub 96.0 0.013 2.9E-07 69.2 7.1 107 242-366 58-164 (499)
65 TIGR01676 GLDHase galactonolac 96.0 0.013 2.9E-07 69.1 7.0 106 241-367 63-168 (541)
66 PRK13906 murB UDP-N-acetylenol 95.8 0.059 1.3E-06 59.8 10.7 153 240-420 37-194 (307)
67 PLN03136 Ferredoxin; Provision 95.7 0.022 4.7E-07 56.2 6.1 49 12-63 55-103 (148)
68 TIGR01973 NuoG NADH-quinone ox 95.6 0.021 4.5E-07 69.3 7.2 92 16-128 1-103 (603)
69 PRK09129 NADH dehydrogenase su 95.6 0.015 3.2E-07 72.7 5.9 106 13-135 1-112 (776)
70 PRK09130 NADH dehydrogenase su 95.6 0.028 6.1E-07 69.0 8.0 96 13-128 1-106 (687)
71 TIGR00179 murB UDP-N-acetyleno 95.5 0.04 8.8E-07 60.4 8.2 138 236-400 8-147 (284)
72 PTZ00305 NADH:ubiquinone oxido 95.5 0.036 7.9E-07 60.0 7.6 99 10-127 65-172 (297)
73 PRK11872 antC anthranilate dio 95.5 0.02 4.4E-07 64.3 5.8 47 14-63 3-52 (340)
74 PLN02465 L-galactono-1,4-lacto 95.4 0.13 2.7E-06 61.5 12.5 159 240-422 97-262 (573)
75 TIGR00387 glcD glycolate oxida 95.4 0.016 3.5E-07 67.0 4.9 103 244-366 2-106 (413)
76 PTZ00490 Ferredoxin superfamil 95.4 0.044 9.6E-07 53.7 7.0 78 19-98 44-138 (143)
77 PTZ00038 ferredoxin; Provision 95.3 0.038 8.3E-07 56.6 6.7 54 8-64 92-145 (191)
78 TIGR01678 FAD_lactone_ox sugar 95.3 0.043 9.3E-07 63.9 7.9 106 241-367 16-121 (438)
79 PRK11183 D-lactate dehydrogena 95.2 0.049 1.1E-06 63.9 8.0 109 241-367 40-153 (564)
80 PRK08166 NADH dehydrogenase su 95.1 0.03 6.6E-07 70.6 6.4 105 13-129 1-111 (847)
81 TIGR01677 pln_FAD_oxido plant- 95.0 0.15 3.2E-06 61.1 11.5 83 241-324 33-118 (557)
82 PRK12436 UDP-N-acetylenolpyruv 95.0 0.16 3.6E-06 56.2 10.9 80 240-324 37-116 (305)
83 TIGR02160 PA_CoA_Oxy5 phenylac 94.9 0.054 1.2E-06 61.1 7.2 53 10-64 261-313 (352)
84 PLN02805 D-lactate dehydrogena 94.8 0.043 9.3E-07 65.6 6.3 107 241-367 135-241 (555)
85 PLN02593 adrenodoxin-like ferr 94.6 0.051 1.1E-06 51.6 5.1 48 13-63 2-51 (117)
86 TIGR01679 bact_FAD_ox FAD-link 94.2 0.097 2.1E-06 60.7 7.1 155 241-422 13-174 (419)
87 PRK00046 murB UDP-N-acetylenol 94.2 0.32 7E-06 54.5 10.9 87 234-324 14-103 (334)
88 PRK13903 murB UDP-N-acetylenol 94.1 0.22 4.8E-06 56.4 9.4 85 234-324 26-113 (363)
89 COG0633 Fdx Ferredoxin [Energy 94.0 0.086 1.9E-06 48.8 5.1 48 15-64 6-53 (102)
90 PRK10684 HCP oxidoreductase, N 93.9 0.075 1.6E-06 59.5 5.4 48 13-63 248-295 (332)
91 PRK07609 CDP-6-deoxy-delta-3,4 93.9 0.066 1.4E-06 60.1 4.9 47 12-63 3-49 (339)
92 PRK14649 UDP-N-acetylenolpyruv 93.8 0.29 6.3E-06 54.0 9.6 87 234-324 14-103 (295)
93 TIGR02007 fdx_isc ferredoxin, 93.3 0.13 2.8E-06 48.3 4.9 42 19-65 14-56 (110)
94 PRK14651 UDP-N-acetylenolpyruv 92.9 0.72 1.6E-05 50.2 10.6 154 234-423 14-170 (273)
95 PRK05464 Na(+)-translocating N 92.6 0.14 3.1E-06 59.1 5.1 50 11-63 33-84 (409)
96 TIGR01941 nqrF NADH:ubiquinone 92.5 0.15 3.3E-06 58.7 5.2 49 12-63 30-80 (405)
97 PRK05713 hypothetical protein; 91.8 0.24 5.1E-06 55.1 5.5 44 15-63 3-46 (312)
98 COG0812 MurB UDP-N-acetylmuram 91.5 2.1 4.6E-05 46.9 12.1 159 235-422 15-182 (291)
99 COG1034 NuoG NADH dehydrogenas 91.5 0.22 4.8E-06 60.6 5.0 97 13-127 1-104 (693)
100 PLN02441 cytokinin dehydrogena 91.0 0.71 1.5E-05 54.8 8.5 82 241-323 66-154 (525)
101 PRK14648 UDP-N-acetylenolpyruv 90.9 0.54 1.2E-05 52.9 7.0 89 234-324 23-114 (354)
102 COG3383 Uncharacterized anaero 90.1 0.51 1.1E-05 56.8 6.1 98 12-127 4-106 (978)
103 PRK11282 glcE glycolate oxidas 89.6 0.84 1.8E-05 51.6 7.3 100 249-367 4-103 (352)
104 KOG2282 NADH-ubiquinone oxidor 85.6 1.4 3.1E-05 50.8 5.9 101 10-127 29-135 (708)
105 PRK09800 putative hypoxanthine 82.9 3 6.5E-05 53.3 7.9 74 786-861 662-746 (956)
106 TIGR03313 Se_sel_red_Mo probab 82.3 2.4 5.3E-05 54.1 6.8 74 786-861 658-742 (951)
107 TIGR02416 CO_dehy_Mo_lg carbon 81.2 2.4 5.3E-05 53.0 6.2 71 789-861 476-557 (770)
108 PRK09970 xanthine dehydrogenas 81.1 3.2 6.8E-05 52.0 7.1 61 785-845 457-529 (759)
109 TIGR02965 xanthine_xdhB xanthi 79.0 3.2 6.9E-05 51.9 6.2 59 787-845 446-515 (758)
110 TIGR03194 4hydrxCoA_A 4-hydrox 78.8 3.9 8.5E-05 51.0 6.9 73 786-860 442-525 (746)
111 TIGR03311 Se_dep_Molyb_1 selen 72.8 6 0.00013 50.1 6.3 72 788-862 594-676 (848)
112 TIGR02969 mam_aldehyde_ox alde 72.5 5.2 0.00011 53.1 5.8 74 786-861 1015-1099(1330)
113 KOG3049 Succinate dehydrogenas 70.9 2.6 5.7E-05 43.4 2.0 48 30-87 75-126 (288)
114 PLN02906 xanthine dehydrogenas 69.9 6.7 0.00015 52.0 6.0 74 786-861 1010-1094(1319)
115 TIGR03196 pucD xanthine dehydr 68.6 8.9 0.00019 48.1 6.4 69 790-860 467-548 (768)
116 PRK07440 hypothetical protein; 68.3 6.4 0.00014 33.8 3.6 31 11-45 2-32 (70)
117 PRK06083 sulfur carrier protei 61.7 11 0.00024 33.6 4.0 35 7-45 12-46 (84)
118 PRK00054 dihydroorotate dehydr 61.0 3.5 7.6E-05 44.1 0.8 16 48-63 214-229 (250)
119 TIGR01372 soxA sarcosine oxida 60.4 20 0.00044 46.4 7.6 81 11-101 10-99 (985)
120 cd06192 DHOD_e_trans_like FAD/ 57.8 5.9 0.00013 42.1 1.9 18 46-63 211-228 (243)
121 KOG4730 D-arabinono-1, 4-lacto 57.3 19 0.00042 41.5 5.8 79 243-324 53-131 (518)
122 PF02738 Ald_Xan_dh_C2: Molybd 56.3 34 0.00074 41.2 8.2 57 788-844 319-386 (547)
123 PF10437 Lip_prot_lig_C: Bacte 56.0 60 0.0013 28.7 7.7 43 470-515 26-68 (86)
124 PF10418 DHODB_Fe-S_bind: Iron 52.5 8.9 0.00019 29.3 1.5 17 48-64 3-19 (40)
125 COG2104 ThiS Sulfur transfer p 51.1 19 0.00041 30.9 3.5 31 12-46 1-31 (68)
126 PLN00192 aldehyde oxidase 49.8 35 0.00077 45.6 7.4 74 786-861 1028-1120(1344)
127 TIGR02911 sulfite_red_B sulfit 48.2 7.3 0.00016 42.1 0.7 18 45-62 223-240 (261)
128 PRK05863 sulfur carrier protei 47.0 20 0.00043 30.2 3.0 28 14-45 1-28 (65)
129 PRK13904 murB UDP-N-acetylenol 45.9 34 0.00074 37.1 5.3 73 235-324 13-86 (257)
130 PRK05659 sulfur carrier protei 44.8 22 0.00048 29.7 3.0 29 14-46 1-29 (66)
131 PRK08053 sulfur carrier protei 44.8 23 0.00049 29.9 3.0 28 14-45 1-28 (66)
132 PRK08221 anaerobic sulfite red 41.2 10 0.00022 41.1 0.4 17 46-62 226-242 (263)
133 COG2871 NqrF Na+-transporting 37.5 37 0.00081 37.0 3.9 49 12-63 35-85 (410)
134 PRK07696 sulfur carrier protei 35.5 40 0.00087 28.6 3.1 29 14-45 1-29 (67)
135 cd06221 sulfite_reductase_like 35.5 15 0.00032 39.5 0.6 17 46-62 224-240 (253)
136 cd06220 DHOD_e_trans_like2 FAD 35.5 18 0.00038 38.2 1.2 16 48-63 200-215 (233)
137 PRK06944 sulfur carrier protei 34.8 38 0.00083 28.1 2.9 27 14-44 1-27 (65)
138 cd00565 ThiS ThiaminS ubiquiti 34.0 78 0.0017 26.4 4.7 27 15-45 1-27 (65)
139 cd06219 DHOD_e_trans_like1 FAD 33.6 24 0.00052 37.7 1.8 29 34-63 195-228 (248)
140 PRK08364 sulfur carrier protei 32.1 61 0.0013 27.6 3.7 32 12-45 3-36 (70)
141 PRK05802 hypothetical protein; 32.0 29 0.00063 38.8 2.2 18 46-63 287-304 (320)
142 KOG3309 Ferredoxin [Energy pro 30.0 1.1E+02 0.0024 30.4 5.4 53 8-64 40-95 (159)
143 PRK06488 sulfur carrier protei 29.3 55 0.0012 27.3 3.0 27 14-45 1-27 (65)
144 COG3894 Uncharacterized metal- 27.8 65 0.0014 37.9 4.0 49 13-67 3-52 (614)
145 cd01813 UBP_N UBP ubiquitin pr 24.3 94 0.002 26.8 3.6 34 12-46 1-34 (74)
146 cd06218 DHOD_e_trans FAD/NAD b 24.1 41 0.00088 35.9 1.5 17 48-64 213-229 (246)
147 PF02594 DUF167: Uncharacteris 23.1 1.3E+02 0.0028 26.4 4.2 43 790-832 17-64 (77)
148 TIGR01683 thiS thiamine biosyn 23.0 72 0.0016 26.6 2.5 26 16-45 1-26 (64)
No 1
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=2.9e-172 Score=1616.09 Aligned_cols=832 Identities=72% Similarity=1.147 Sum_probs=706.5
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
.++|+|+|||+++++++++|++|||+|||++++|||||+||++|+||||||+|+++|+.++++++++|||||+|+++++|
T Consensus 3 ~~~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 82 (1344)
T PLN00192 3 NMSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNG 82 (1344)
T ss_pred cceEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCC
Confidence 46799999999999977999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (864)
++|+|||||++.++.|||||+||+++||+|||||||||||+||+||+++....+|+|..+.+.+|++||+++|+||||||
T Consensus 83 ~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCRC 162 (1344)
T PLN00192 83 CSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCRC 162 (1344)
T ss_pred CEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCceeC
Confidence 99999999996567899999999999999999999999999999996531000123210111247999999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccc--cCcceeecCCceEEecCC
Q 002932 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE--NSSAMLLDVKGSWHSPIS 248 (864)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~~~~~~~~~~~~P~t 248 (864)
||||||++|+++++.+.++++++.+||++++++.....++++++++++++|+| |+|+.. ....+.+..+++|++|+|
T Consensus 163 tgY~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~s 241 (1344)
T PLN00192 163 TGYRPIVDACKSFAADVDIEDLGLNSFWKKGESEEAKLSKLPPYNHSDHICTF-PEFLKKEIKSSLLLDSSRYRWYTPVS 241 (1344)
T ss_pred CCCHHHHHHHHHHHhhccchhcccccccccCCcchhhhhhcccCCCccccccC-hhhhhcccCccceecCCCceEECcCC
Confidence 99999999999999887777777667766432223344688999999888889 555432 223344445899999999
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhh
Q 002932 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (864)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (864)
|+||+++|+++.. ..+++++||||||+++++....++++|||++|+||+.|+.++++|+|||+|||+++++.+++. .
T Consensus 242 l~ea~~ll~~~~~-~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~--~ 318 (1344)
T PLN00192 242 VEELQSLLESNNF-DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREE--S 318 (1344)
T ss_pred HHHHHHHHHhCCC-CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhh--c
Confidence 9999999995411 024899999999999987656789999999999999999999999999999999999986543 1
Q ss_pred hhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCC
Q 002932 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLD 408 (864)
Q Consensus 329 ~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~~~~l~ 408 (864)
.++ .++|.|.+++++|||+||||+||||||||+++|..++||++|+|+||||+|+|.+.+|+|+||++|||.++.++
T Consensus 319 ~~~---~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~Asp~~p~sD~~p~LlAl~A~v~l~s~~g~R~vpl~dFf~~~~l~ 395 (1344)
T PLN00192 319 KSE---YVFKKIADHMEKIASRFVRNTGSIGGNLVMAQRKQFPSDIATILLAAGSTVNIQNASKREKLTLEEFLERPPLD 395 (1344)
T ss_pred ccc---chHHHHHHHHHHhcChhhccceechhhhcccCCCCCchhHHHHHHHhCcEEEEEeCCceEEEeHHHHhccCccC
Confidence 111 15899999999999999999999999999999765569999999999999999999999999999999988899
Q ss_pred CCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCC-Cc
Q 002932 409 SRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGT-KH 487 (864)
Q Consensus 409 ~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~-~~ 487 (864)
+||||++|+||.+... ++.....+|.+||+++||+++|||+||+||.++++.+.+.++++|+++||+||||++ +
T Consensus 396 ~~Eil~~I~iP~~~~~----~~~~~~~~f~~yk~~~Rr~~~diA~V~aA~~v~~~~~~~~~~~~i~~aria~Ggvap~~- 470 (1344)
T PLN00192 396 SKSLLLSVEIPSWTSS----SGSDTKLLFETYRAAPRPLGNALPYLNAAFLAEVSQDASSGGIVVNDCRLAFGAYGTKH- 470 (1344)
T ss_pred CcceEEEEEccCCccc----cccCcccceeeeeecccccccchhhheeeEEEEEEecccCCCCeEeEEEEEEecCCCCc-
Confidence 9999999999965420 001125778889999995589999999999999851100013489999999999999 7
Q ss_pred ceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhc-CCCccccCCCCCCCC
Q 002932 488 AIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKN-GISRDWLCGYSNNVS 566 (864)
Q Consensus 488 p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~sa~YRr~la~~L~~r~l~~~~~~~~-~~~~~~~~~~~~~~~ 566 (864)
|+|+.++|++|.||+|+++++++|++++.+++.|.++.+|++|||.|+.+|++|||.++++.+. ..++.+.-+.
T Consensus 471 P~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~~~~p~~~~~s~eYRr~la~~l~~r~~~~~~~~~~~~~~~~~~~~~----- 545 (1344)
T PLN00192 471 AIRARKVEEFLTGKVLSDSVLYEAVRLLKGIVVPEDGTSHPEYRSSLAVGFLFDFLSPLIESNAKSSNGWLDGGS----- 545 (1344)
T ss_pred eecHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-----
Confidence 9999999999999999999999999999999999998889999999999999999999997751 1111210000
Q ss_pred ccccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCc
Q 002932 567 LKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLA 646 (864)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a 646 (864)
++.++...+....++||+++|.|.|++++++++|||+++|+|+..|+||+++|++|++.+|||||+++||||++||
T Consensus 546 ----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahA 621 (1344)
T PLN00192 546 ----NTKQNPDQHDDVKKPTLLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPLA 621 (1344)
T ss_pred ----cccccccccccccccCCCCCcceeeecccccCcCCCCCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCce
Confidence 0001111123457899999999999988999999999999999999999999999997568999999999999999
Q ss_pred eeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCcccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEec
Q 002932 647 RIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEM 726 (864)
Q Consensus 647 ~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~ 726 (864)
+|++||+++|++||||++|+|++|+|..+.|++......|+|+|++++|+|+|||||+|||+|+++|++|+++|+|+|+.
T Consensus 622 rI~sID~s~A~~~pGV~aV~t~~Dip~~~~~~g~~~~~~~~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeYe~ 701 (1344)
T PLN00192 622 RVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYDT 701 (1344)
T ss_pred EEEEEEhHHhhcCCCcEEEEchHHcCcccccCCCCCCCCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEEec
Confidence 99999999999999999999999998433334322223589999999999999999999999999999999999999932
Q ss_pred CCCCCccCCHHHHHhcCCCccCCCccccCCCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeC
Q 002932 727 GNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSS 806 (864)
Q Consensus 727 e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~s 806 (864)
+++.|+++|+++|++++++++.+........||++++|++|+++++|++|++++|+|+||||++|+|+|++||+|+||+|
T Consensus 702 ~~l~p~v~~i~~Al~~~s~~~~~~~~~~~~~GD~~~af~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~~dg~l~V~~s 781 (1344)
T PLN00192 702 ENLEPPILTVEDAVKRSSLFEVPPFLYPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPDEDNCIVVYSS 781 (1344)
T ss_pred CCCCCcccCHHHHhcCCCCcccChhhcccccCCHHHHhccCCeEEEEEEEEECCEeeeeccCceEEEEEcCCCCEEEEEC
Confidence 21337899999999998865322222234679999999999997459999999999999999999999998778999999
Q ss_pred CCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 807 IQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 807 tQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
||+|+.+|..||++||||++||+|+++++|||||+|.++...++++||+||+++|||
T Consensus 782 TQ~p~~~r~~vA~~Lgip~~~VrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRP 838 (1344)
T PLN00192 782 TQCPEYVHSVIARCLGIPEHNVRVITRRVGGGFGGKAVKSMPVATACALAAFKLQRP 838 (1344)
T ss_pred CCCHHHHHHHHHHHhCCChHHEEEEecccccCCCccccccchHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999987677888999999999998
No 2
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=3.3e-167 Score=1568.98 Aligned_cols=789 Identities=31% Similarity=0.514 Sum_probs=686.0
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCce
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL 92 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~ 92 (864)
.|+|+|||+++++.+++|+++||+|||+++||||||.||++|+||||||+|+.+|+.++++++++|||||+|+++++|++
T Consensus 2 ~~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 81 (1330)
T TIGR02969 2 ELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAA 81 (1330)
T ss_pred cEEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCE
Confidence 48999999999765689999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCC
Q 002932 93 ITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTG 172 (864)
Q Consensus 93 i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtg 172 (864)
|+|||||++.++.|||||+||+++||+|||||||||||++++||++ +|+| |++||+++|+||||||||
T Consensus 82 v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~-----~~~p-------~~~~i~~~l~gnlCRCtg 149 (1330)
T TIGR02969 82 VTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRN-----HPEP-------TLDQLTDALGGNLCRCTG 149 (1330)
T ss_pred EEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHc-----CCCC-------CHHHHHHHhcCCcccCCC
Confidence 9999999864568999999999999999999999999999999954 4666 699999999999999999
Q ss_pred ChhHHHHHHHhhhccc--ccccCCCccccc---C--Cc--------ccccccCCCCCCCCCcccCCCcccccc-c--Ccc
Q 002932 173 YRPIADACKSFAADVD--IEDLGINSFWAK---G--ES--------KEVKISRLPPYKHNGELCRFPLFLKKE-N--SSA 234 (864)
Q Consensus 173 y~~i~~a~~~~~~~~~--~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~~~~~~~~~~p~~l~~~-~--~~~ 234 (864)
|++|++|+++++.+.. +++++.+||+.+ + ++ .....+++.++++.++ .+||++|... . +..
T Consensus 150 Y~~i~~a~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fp~~l~~~~~~~~~~ 228 (1330)
T TIGR02969 150 YRPIIDACKTFCKTSGCCQSKENGVCCLDQGINGLPEFEEGDETSPELFSEEEFLPLDPTQE-LIFPPELMRMAEKQPQR 228 (1330)
T ss_pred CHHHHHHHHHHhhccCCchhccccCccccccccccccccccccccccccchhcccCCCcccc-ccCChhHhhcccccccc
Confidence 9999999999997753 334444677521 1 00 0111234555776654 5899998743 1 222
Q ss_pred -eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEecCCcEEec
Q 002932 235 -MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIG 310 (864)
Q Consensus 235 -~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IG 310 (864)
+.+.+ +.+|++|+||+||+++|+ +++++++|||||||++ ++.+ ..++.+|||++|+||+.|+.++++|+||
T Consensus 229 ~~~~~~~~~~~~~P~tl~ea~~ll~-----~~~~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IG 303 (1330)
T TIGR02969 229 TRVFYSERMMWISPVTLKELLEAKF-----KYPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLG 303 (1330)
T ss_pred eeeecCCCceEECCCCHHHHHHHHH-----hCCCCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEe
Confidence 55655 689999999999999999 4589999999999998 4443 5678999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeC
Q 002932 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG 390 (864)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~ 390 (864)
|+|||++|++.+.+.++++|+...+.+|.|++++++|||+||||+|||||||||+||+ ||++|+|+||||+|+|.+.
T Consensus 304 A~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~---sD~~p~LlAl~A~v~l~s~ 380 (1330)
T TIGR02969 304 AGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD---SDLNPLLAVGNCTLNLLSK 380 (1330)
T ss_pred ccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc---hhHHHHHHHcCcEEEEecC
Confidence 9999999999887776656666667899999999999999999999999999999999 9999999999999999999
Q ss_pred CeeEEEehhhhhc----CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCC
Q 002932 391 QKCEKLMLEEFLE----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCK 466 (864)
Q Consensus 391 ~g~R~vpl~dF~~----~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~ 466 (864)
+|+|+||++|||. +++|+++|||++|+||.+.. +.++.+||+++| +++|||+||+|+.+++++
T Consensus 381 ~g~R~vpl~dff~~~~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~-- 447 (1330)
T TIGR02969 381 EGKRQIPLSEQFLSKCPDADLKPQEILVSVNIPYSRK----------WEFVSAFRQAQR-QQNALAIVNSGMRVFFGE-- 447 (1330)
T ss_pred CceEEEehHHhhhcccccccCCCCceEEEEEecCCCC----------ccceeEEEEcCC-ccccHHHhhheEEEEEEc--
Confidence 9999999999883 68999999999999997643 356678999999 899999999999999951
Q ss_pred CCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCC-CCCC-CCHHHHhHHHHHHHHHHHH
Q 002932 467 TGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGT-SIPAYRSSLAVGFLYEFFG 544 (864)
Q Consensus 467 ~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p-~~~~-~sa~YRr~la~~L~~r~l~ 544 (864)
++++|+++||+||||+++ |+|+.++|++|.||+|+++++++|.+++.+++.| .+|. +|++|||+|+.+||+|||+
T Consensus 448 --~~~~i~~aria~Ggvap~-p~ra~~~E~~L~Gk~~~~~~~~~A~~~l~~~~~p~~~d~r~sa~YRr~la~~ll~kf~~ 524 (1330)
T TIGR02969 448 --GDGIIRELSISYGGVGPT-TICAKNSCQKLIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYL 524 (1330)
T ss_pred --CCCEEeEEEEEEEcCcCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 136999999999999999 9999999999999999999999999999999986 5545 5999999999999999999
Q ss_pred HHhhhhcCCCccccCCCCCCCCccccccccccccccccccccccCccccccccC--cC--CcCCCCcccccccccccccc
Q 002932 545 SLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLS--RE--YYPVGEPITKSGAALQASGE 620 (864)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~--~~--~~~vG~~~~r~d~~~kvtG~ 620 (864)
++..++....+.... ..+. +. . +....+++|+|+|.|.|+.. .+ .++|||+++|+|+..||||+
T Consensus 525 ~~~~~~~~~~~~~~~------~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGk~v~r~d~~~kvtG~ 592 (1330)
T TIGR02969 525 EVSQILKRMDPGHYP------SLAD----KY-E-SALEDLHSKHHWSTLKHQNVDSMQLPQDPIGHPIMHLSGVKHATGE 592 (1330)
T ss_pred HHhhhhccccccccc------cCCh----hh-c-cccccccCCCCccccceecccccccccCcCCCCCcChhhHhhcccc
Confidence 998776321111000 0000 01 1 13457889999999988742 22 28899999999999999999
Q ss_pred eeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCcccCCCcccccCCceeecCC
Q 002932 621 AIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQ 700 (864)
Q Consensus 621 a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~p~~a~~~V~y~Gq 700 (864)
++|++|++.+|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|. ..++|+|++++|+|+||
T Consensus 593 a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp--~~~~-----~~~~~~la~~~Vr~~Gq 665 (1330)
T TIGR02969 593 AIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGVVDIITAEHLQ--DANT-----FGTEKLLATDKVHCVGQ 665 (1330)
T ss_pred ccccCCCCCCCCCEEEEEEecCCCceEEEeeeHHHHhcCCCeEEEEeHHHCC--CCCC-----CCCeeecCCCeEEEcCC
Confidence 9999999745899999999999999999999999999999999999999998 4332 24789999999999999
Q ss_pred cEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCCccCCCccccCCCCChhhhcccCCEEEEEEEEEECc
Q 002932 701 PVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGS 780 (864)
Q Consensus 701 pVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~vvve~~~~~~~ 780 (864)
|||+|||+|+++|++|+++|+|+| |+++|+++|+++|+++++++.... ....||++++|++++++ ||++|++++
T Consensus 666 pva~VvAet~~~A~~Aa~~V~VeY--e~l~~~v~d~~~Al~~~a~~~~~~---~~~~Gdv~~af~~a~~v-ve~~y~~~~ 739 (1330)
T TIGR02969 666 LVCAVIADSEVQAKQAAKHVKIVY--RDLEPLILTIEEAIQHKSFFEPER---KLEYGNVDEAFKVVDQI-LEGEIHMGG 739 (1330)
T ss_pred eEEEEEECCHHHHHHHhcCCEEEE--ecCCCCcCCHHHHhcCCCEecccc---cccCCchhhhhccCCEE-EEEEEEECC
Confidence 999999999999999999999999 778566799999999887544221 35789999999999996 999999999
Q ss_pred cccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 002932 781 QYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPFNIVGATIELL 859 (864)
Q Consensus 781 q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~ 859 (864)
|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.+.....++.||++|++
T Consensus 740 ~~H~~mEp~~~~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aA~aA~~ 819 (1330)
T TIGR02969 740 QEHFYMETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKTSIMAAITAFAANK 819 (1330)
T ss_pred EeecccCCCEEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcccccccccHHHHHHHHHHHH
Confidence 99999999999999984 57899999999999999999999999999999999999999999998644456889999999
Q ss_pred cCCC
Q 002932 860 TVYR 863 (864)
Q Consensus 860 t~~~ 863 (864)
+|||
T Consensus 820 ~gRP 823 (1330)
T TIGR02969 820 HGRA 823 (1330)
T ss_pred hCCC
Confidence 9998
No 3
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-167 Score=1454.93 Aligned_cols=775 Identities=43% Similarity=0.707 Sum_probs=696.4
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~ 91 (864)
|.+.|+|||++++++.+||++||+.|||++++|||||.||+||+||||||+|++||+.+ ++.+++|||||+|+++++|+
T Consensus 1 ~~l~F~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g~ 79 (1257)
T KOG0430|consen 1 MELVFAINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHGL 79 (1257)
T ss_pred CceEEEECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccce
Confidence 56899999999999999999999999999999999999999999999999999999998 88999999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 002932 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (864)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCt 171 (864)
+|||+||||++++++||||++|++.||+||||||||||||||+||.|++ ..| |++||+++|+|||||||
T Consensus 80 ~VtT~EGlGn~~~g~HPiq~RlA~~hgsQCGFCtPG~vmsmYalL~n~~----~~~-------T~~eie~a~~GNLCRCT 148 (1257)
T KOG0430|consen 80 EVTTSEGLGNRRDGYHPIQERLAKMHGSQCGFCTPGFVMSMYALLRNSK----NSP-------TMEEIENAFGGNLCRCT 148 (1257)
T ss_pred EEEeeecccccccCcCcHHHHHhhccCCcccCCCccHHHHHHHHHHhCC----CCC-------CHHHHHHhhccceeeec
Confidence 9999999999889999999999999999999999999999999997641 123 79999999999999999
Q ss_pred CChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecC-CceEEecCCHH
Q 002932 172 GYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSPISVQ 250 (864)
Q Consensus 172 gy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P~tl~ 250 (864)
|||||+||+|+||.+.++|++|.+..|++ +++....++ ++|+|+++. +|||+++...+. ..+.. +.+|++|.||+
T Consensus 149 GYRPIldA~kSFa~d~~~~~~g~~~~~~~-~~~~~~~~~-~~~dp~~~~-i~~pe~~~~~~~-~~~~~~~~~W~~P~sl~ 224 (1257)
T KOG0430|consen 149 GYRPILDAMKSFAVDSDICGPGCDGFSIA-EEKDIEDLS-PPYDPKKEL-IFPPELLKRKKT-TLLGNDGIRWYWPVSLE 224 (1257)
T ss_pred CCchHHHHHhhhccCCCccccCccccccc-ccccccccc-CCCCCccCc-ccChHHhccccc-cccCCCCcEEeCcccHH
Confidence 99999999999999999998875444444 444455556 899998866 777777655333 34443 89999999999
Q ss_pred HHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhhhh
Q 002932 251 ELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFH 330 (864)
Q Consensus 251 eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 330 (864)
|++++++ +.+.+++|+|||..+++++...++.+||+++||||+.+..++++|+|||++||+++++.+++.++ .+
T Consensus 225 eL~~~~~-----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~l~~~~~-~~ 298 (1257)
T KOG0430|consen 225 ELFELKA-----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMELLRKLVK-RP 298 (1257)
T ss_pred HHHHHHh-----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHHHHHHHh-Cc
Confidence 9999999 57999999999999998766669999999999999988889999999999999999999887654 33
Q ss_pred hhhhhhHHHHHHHHHHhccccccCCcccCCccccccC-CCCCCchHHHHHhcCcEEEEEeCCe-eEEEehhhhhcCCCCC
Q 002932 331 SEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQK-CEKLMLEEFLERPPLD 408 (864)
Q Consensus 331 ~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp-~~f~sD~~p~LlaldA~v~l~s~~g-~R~vpl~dF~~~~~l~ 408 (864)
..++|+.+.+|+++||++||||.|||||||+.+++ ..||||++++|+|+||+|++.+..+ ..++.+.+|.... |.
T Consensus 299 --~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~~f~SDl~~~l~a~~a~v~~~~~~~~~~~~~l~~y~~~~-l~ 375 (1257)
T KOG0430|consen 299 --GFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPEFPSDLFILLEALDAKVTILNNSGDLEKVFLEEYLGSS-LG 375 (1257)
T ss_pred --HHHHHHHHHHHHHHhcccceeccccccceeEeccCCCCCchhHHHHHHhhccEEEEeecCCccceeeHhhhhccc-cC
Confidence 23789999999999999999999999999988887 5789999999999999999998655 7889999998655 99
Q ss_pred CCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcc
Q 002932 409 SRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHA 488 (864)
Q Consensus 409 ~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p 488 (864)
++|||.+|.||.+.. +|.+||+++| +++|+|+||++|+..+ ++|+++||+|||++|. .
T Consensus 376 ~~~illsv~ip~~~~------------~f~~~k~a~R-~e~a~a~vNa~fl~e~--------~~V~~~~i~fGg~~p~-~ 433 (1257)
T KOG0430|consen 376 AKEILLSVVLPASRK------------YFESYKQAPR-RENAIAYVNAAFLAEV--------GKVSSARICFGGIAPD-F 433 (1257)
T ss_pred cceEEEEEEccCcHH------------HHHHHHhccc-ccchhhhhhHHhhhcc--------ceeeeeeEeecCcCcc-h
Confidence 999999999999852 6788999999 7899999999887765 2899999999999999 9
Q ss_pred eeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcc
Q 002932 489 IRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLK 568 (864)
Q Consensus 489 ~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~sa~YRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (864)
+++.++|+.|.||.|+++++++|+.+|..++.|..|.++.+||+.||.+||+|||+.+.+..+.. ..+..|
T Consensus 434 i~a~~~~~~~~gk~~~~~ll~~a~~lL~~~l~~~~p~~~~~yR~~La~sfffKF~l~~~~~~~~~-~~~~~g-------- 504 (1257)
T KOG0430|consen 434 IHAKKTEELLLGKPWEEELLEDAFGLLQSDLVPDEPGGMPEYRKKLALGFFFKFLLKVAHKVKNG-NKFITG-------- 504 (1257)
T ss_pred hhhhhHHHHhhcccccHHHHHHHHHhhhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhcccc-CCccCC--------
Confidence 99999999999999999999999999999999988889999999999999999999999887422 222222
Q ss_pred ccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCcee
Q 002932 569 DSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARI 648 (864)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I 648 (864)
.....+|++++.|.+.+..+.++||+|+.++.+..|+||||.|++||+.+++.||++||.|+++||+|
T Consensus 505 ------------~~~~~~~~ls~~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~I 572 (1257)
T KOG0430|consen 505 ------------GSLLARPLLSGGQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAKI 572 (1257)
T ss_pred ------------CccccccccccceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcEE
Confidence 12446778888888888777999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcCCCCCCEEEEEEcCCCCCCCCCC---CCcccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEe
Q 002932 649 KGIEFKSESVPDVVTALLSYKDIPEGGQNI---GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (864)
Q Consensus 649 ~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~---~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~ 725 (864)
++||+++|+++|||+++++++||| |.|. +......|+++||+++|+|+||||++|||+|.++|++||++|+|+|
T Consensus 573 ~sID~seAl~~~GVv~~~~akDiP--g~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y- 649 (1257)
T KOG0430|consen 573 LSIDASEALKLPGVVAFFSAKDIP--GNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEY- 649 (1257)
T ss_pred eeecchhhcCCCceEEEEecccCC--CCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEe-
Confidence 999999999999999999999999 5552 2223457999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCHHHHHhcCCCccCCCccccCCCCChhhhc--ccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEE
Q 002932 726 MGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGM--NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVV 803 (864)
Q Consensus 726 ~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~--~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V 803 (864)
++++|+++++++|+++.++++.++ ....+++.+.+ .++|.+ ++++++++.|+|||||||+++|+|++| .|.|
T Consensus 650 -~~l~p~I~t~e~Ai~~~s~~~~~~---~~~~~~~~~~~~~~~~d~i-~~Ge~~mG~QeHFYmEtQttl~vP~e~-el~v 723 (1257)
T KOG0430|consen 650 -EELPPPILPSEDAVKDKSLSETEP---RLRKGDVGKSFQLEECDKI-LEGELDMGGQEHFYMEPQTTLVVPFEG-ELQV 723 (1257)
T ss_pred -ccCCCceecHHHHHhhhcccCCCc---cccccCcccccccccccee-EEEEEEecceeEEEeccceeEEeecCC-eEEE
Confidence 778788999999999998766443 34555655555 557885 999999999999999999999999977 8999
Q ss_pred EeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 804 YSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 804 ~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|+|||||..+|..||++||||.|+|+|+++|+|||||||.+++.++|++||+||+|++||
T Consensus 724 ~~STQ~~~~tQ~~VA~~Lgipa~~V~v~trRvGGGFGGK~trs~~VA~a~ALaA~Kl~RP 783 (1257)
T KOG0430|consen 724 YSSTQWPDFTQSVVAHVLGLPANKVQVKTRRLGGGFGGKETRSNPVAAAAALAAYKLNRP 783 (1257)
T ss_pred EEcCcCcHHHHHHHHHHhCCCccceEEEEEeeccccccccccccHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=3.5e-164 Score=1543.10 Aligned_cols=774 Identities=32% Similarity=0.520 Sum_probs=676.6
Q ss_pred CCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEecCCCCCCCCcchHh
Q 002932 31 STTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIH 110 (864)
Q Consensus 31 ~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~TvEgl~~~~~~~h~iq 110 (864)
++|||+|||+ +||||||.||++|+||||||+|+++|+.++++.+++|||||+|+++++|++|+|||||++.++.+||||
T Consensus 1 ~~~ll~~LR~-~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq 79 (1319)
T PLN02906 1 HQTLLEYLRD-LGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQ 79 (1319)
T ss_pred CCcHHHHHHh-CCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHH
Confidence 4799999998 999999999999999999999999998888899999999999999999999999999996557899999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCChhHHHHHHHhhhccc--
Q 002932 111 QRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD-- 188 (864)
Q Consensus 111 ~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~-- 188 (864)
+||+++||+|||||||||||+||+||+++ .+.| +++||+++|+|||||||||+||++|+++++.+.+
T Consensus 80 ~a~~~~~~~QCG~CtpG~vm~~~~ll~~~----~~~~-------~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~~~ 148 (1319)
T PLN02906 80 EALASMHGSQCGFCTPGFIMSMYALLRSS----KTPP-------TEEQIEECLAGNLCRCTGYRPILDAFRVFAKTDDAL 148 (1319)
T ss_pred HHHHHcCCCcCCCCchHHHHHHHHHHHhC----CCCC-------CHHHHHHHhcCCcccCCCCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999643 1344 6999999999999999999999999999997742
Q ss_pred --------ccccCCCcccccCCcc----------------cc----cccCCCCCCCCCcccCCCcccccccCcceeecC-
Q 002932 189 --------IEDLGINSFWAKGESK----------------EV----KISRLPPYKHNGELCRFPLFLKKENSSAMLLDV- 239 (864)
Q Consensus 189 --------~~~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~- 239 (864)
+++++ +||..++..+ .+ ..+++++|+++|++ +||++|....+..+.+.+
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~~~~~~~~ 226 (1319)
T PLN02906 149 YTGVSSLSLQDGE-PICPSTGKPCSCGSKTTSAAGTCKSDRFQPISYSEIDGSWYTEKEL-IFPPELLLRKLTPLKLLGN 226 (1319)
T ss_pred CCcccchhhhhcc-ccccccCcccccccccccccccccccccccccccccccccCccccc-cCCHHHhhCCCcceeecCC
Confidence 12222 4553221100 00 11456788888764 999998654445566643
Q ss_pred -CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEecCCcEEecccccHH
Q 002932 240 -KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (864)
Q Consensus 240 -~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (864)
+++|++|+||+||++||+ +++++++|||||||++ ++.+ ..++.+|||++|+||++|+.++++|+|||+|||+
T Consensus 227 ~~~~~~~P~tl~ea~~ll~-----~~~~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 227 GGLTWYRPTSLQHLLELKA-----EYPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred CCceEECcCCHHHHHHHHH-----hCCCCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 799999999999999999 4688999999999988 4443 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEE
Q 002932 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEK 395 (864)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g-~R~ 395 (864)
+|+++|...+++.++...+.+|.|.+++++|||+||||+||||||||+++|+ ||++|+|+||||+|+|.+.+| +|+
T Consensus 302 el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlAl~A~v~l~s~~g~~R~ 378 (1319)
T PLN02906 302 ELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASPI---SDLNPLWMAAGATFVIISCDGDIRS 378 (1319)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCCc---hhHHHHHHHcCcEEEEEcCCCCeEE
Confidence 9999887766555555667899999999999999999999999999999998 999999999999999999886 899
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 002932 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (864)
Q Consensus 396 vpl~dF~~---~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~ 472 (864)
||++|||. ++.|.++|||++|+||.+.. ..++.+||+++| +++|||+||+|+.++++..+ ++++
T Consensus 379 vpl~dFf~g~~kt~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~~~--~~~~ 445 (1319)
T PLN02906 379 VPASDFFLGYRKVDLKPDEILLSVFLPWTRP----------FEYVKEFKQAHR-RDDDIAIVNAGMRVKLEEKD--GEWI 445 (1319)
T ss_pred EEHHHhcCccccccCCCCceEEEEEccCCCC----------CccEEEEEEcCc-cccchhheeeEEEEEEecCC--CCce
Confidence 99999997 68999999999999997654 456778999999 79999999999999996311 1138
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC--CCHHHHhHHHHHHHHHHHHHHhhhh
Q 002932 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT--SIPAYRSSLAVGFLYEFFGSLTEMK 550 (864)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~--~sa~YRr~la~~L~~r~l~~~~~~~ 550 (864)
|+++||+||||+++ |+|++++|++|.|++|+++++++|++.+.+++.|.++. +|++||++|+.+|++|||+++..++
T Consensus 446 i~~aria~Ggva~~-p~ra~~~E~~L~G~~~~~~~i~~A~~~l~~~~~p~~d~~~~sa~YR~~la~~ll~r~~~~~~~~~ 524 (1319)
T PLN02906 446 VSDASIAYGGVAPL-SVSARKTEEFLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKFFLWVSHQL 524 (1319)
T ss_pred EeEEEEEEeccCCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCcCCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999 99999999999999999999999999999999988775 5999999999999999999999876
Q ss_pred cCCCccccCCCCCCCCccccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCC
Q 002932 551 NGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSP 630 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~ 630 (864)
....+.+. ..++ ... ++...++||+|+|.|.|+.++++++|||+++|.|+..||||+++|++|++.+
T Consensus 525 ~~~~~~~~----~~~~--------~~~-~~~~~~~~~~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~Y~~Di~~~ 591 (1319)
T PLN02906 525 EADGSTIE----TFPE--------SHL-SAAQPFPRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMP 591 (1319)
T ss_pred cccccccc----cCCh--------hhc-cccccccCCCCccceecccccccccCCCCccCcchhhhcceeEEeccCCcCC
Confidence 21000000 0000 011 1245789999999999998889999999999999999999999999999855
Q ss_pred CCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCC-CCCcccCCCcccccCCceeecCCcEEEEEeCC
Q 002932 631 INCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEPLFADELTRCAGQPVAFVVADS 709 (864)
Q Consensus 631 ~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n-~~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet 709 (864)
|||||+++||||++||+|++||+++|++||||++|+|++|+| +.| +| ....++|+|++++|+|+|||||+|||+|
T Consensus 592 ~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~v~t~~Dip--~~~~~g--~~~~~~~~la~~~V~y~GqpVa~VvA~t 667 (1319)
T PLN02906 592 PNTLHAALVLSTKPHARILSIDDSEAKSSPGFAGIFLAKDVP--GDNMIG--PVVHDEELFATDVVTCVGQVIGVVVADT 667 (1319)
T ss_pred CCCEEEEEEecCcCceEEeecchHHHhCCCCeEEEEchhhCC--CCCCCC--CCCCCeeEecCcEEEEcCCeEEEEEECC
Confidence 899999999999999999999999999999999999999998 433 33 2346899999999999999999999999
Q ss_pred HHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCCccCCCccccCCCCChhhhccc--CCEEEEEEEEEECccccCCCC
Q 002932 710 QKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNE--ADHRILAAEIKLGSQYYFYME 787 (864)
Q Consensus 710 ~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~--a~~vvve~~~~~~~q~H~~mE 787 (864)
+++|++|+++|+|+| |+| |+++|+++|++++++|+... .....||++++|++ ++++ ||++|++++|+|+|||
T Consensus 668 ~~~A~~Aa~~V~Vey--e~l-p~v~~~~~Al~~~a~~~~~~--~~~~~Gdv~~af~~a~a~~v-ve~~~~~~~~~H~~mE 741 (1319)
T PLN02906 668 QENAKAAARKVKVEY--EEL-PAILSIEEAIEAGSFHPNTE--RRLEKGDVELCFASGQCDRI-IEGEVQMGGQEHFYLE 741 (1319)
T ss_pred HHHHHHHhCCCEEEE--ecC-CccCCHHHHhcCCCcccCCC--ceeecCCHHHHhhccCCceE-EEEEEEECCccccccC
Confidence 999999999999999 788 89999999999888765322 13578999999998 6985 9999999999999999
Q ss_pred CCeEEEEECCC-CcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 788 TQTALAVPDED-NCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 788 p~~a~A~~~~d-g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|++|+|+|+++ |+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.+...+++++||+||+++|||
T Consensus 742 p~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lgip~~kVrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRP 818 (1319)
T PLN02906 742 PNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPAYLLNRP 818 (1319)
T ss_pred CCeEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhCCChHHeEEEeCCcccCccccccccchHHHHHHHHHHHhCCC
Confidence 99999999977 58999999999999999999999999999999999999999999987666778899999999998
No 5
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-114 Score=906.45 Aligned_cols=470 Identities=30% Similarity=0.525 Sum_probs=414.3
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
.++|+|.|||+.+.+++++|+.|||||||.+.+|||||+||+||+||||||+|++..+.. .+.+++||+|+.++.++||
T Consensus 6 ~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~g~-~l~yeSVNACirfl~sL~G 84 (493)
T COG4630 6 RNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVDGG-SLRYESVNACIRFLGSLDG 84 (493)
T ss_pred cceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecCCC-ceeeeehhHHHHHHhhcCC
Confidence 478999999999999999999999999999999999999999999999999999987543 2789999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (864)
++|+|||+|+.+++.||||||+|+++|||||||||||||||||+|+.++ +.| +.+.|+++|+||||||
T Consensus 85 ~hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~~-----~~P-------~~a~i~kALqGNLCRC 152 (493)
T COG4630 85 THVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMNS-----PTP-------SRAAIEKALQGNLCRC 152 (493)
T ss_pred ceEEEehhhcCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhcC-----CCC-------chhHHHHHhhCCcccc
Confidence 9999999999877779999999999999999999999999999999653 555 5899999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecC-CceEEecCCH
Q 002932 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSPISV 249 (864)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P~tl 249 (864)
|||+||++|...++.-.....+ +.....+ ......+.... ....+.+.+ ..+++.|.++
T Consensus 153 TGY~pI~~AA~~~~a~~~~a~f--DPl~~~R---~~~~~~L~A~~---------------~~e~v~~~~~~~r~~~P~~l 212 (493)
T COG4630 153 TGYRPIIRAAEAIAALGPAAGF--DPLAARR---TAITARLRALR---------------DTETVEVGSGDDRFIVPATL 212 (493)
T ss_pred cCchHHHHHHHHHhccCCcccC--ChhhhhH---HHHHHHHhhcc---------------CCcEEEecCCCceeEeeccH
Confidence 9999999999977532100000 0000000 00000000000 012344444 6789999999
Q ss_pred HHHHHHHhhhcCCCCCcceEEccCccceEe--eecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhh
Q 002932 250 QELRNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETK 327 (864)
Q Consensus 250 ~eal~ll~~~~~~~~~~a~lvaGgTdl~v~--k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~ 327 (864)
+++..+++ .+|++++|||+||+++| |.......+|.+++|+||+.|++..+.|+|||++||++....|..
T Consensus 213 ~D~a~l~a-----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~--- 284 (493)
T COG4630 213 ADFADLLA-----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAG--- 284 (493)
T ss_pred HHHHHHHh-----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHh---
Confidence 99999999 57999999999999996 444678899999999999999999999999999999999998765
Q ss_pred hhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc---C
Q 002932 328 EFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE---R 404 (864)
Q Consensus 328 ~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~---~ 404 (864)
.+|.|.+...+|||.||||+|||||||+|+||+ .|.+|+|+||||+|+|++.+++|++||+|||. +
T Consensus 285 --------~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI---GDtPPaLIALgA~ltLr~g~~~RtlPLe~~Fi~Y~k 353 (493)
T COG4630 285 --------RYPALGELWDRFGGEQVRNMGTLGGNIANGSPI---GDTPPALIALGATLTLRSGDGRRTLPLEDYFIAYGK 353 (493)
T ss_pred --------hCchHHHHHHHhcchhhhccccccccccCCCcC---CCCCchhhhcCcEEEEEecCCcccccHHHHHHHhhh
Confidence 499999999999999999999999999999999 89999999999999999999999999999996 7
Q ss_pred CCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccC
Q 002932 405 PPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFG 484 (864)
Q Consensus 405 ~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~ 484 (864)
+++.|||+|.+++||.+.+ ...|.+||++|| +++||+.|.+||.+.++ +++|.++||+||||+
T Consensus 354 qdr~pGEfVe~v~vP~~~~----------~~rfa~yKisKR-rdeDISAv~~Af~l~Ld------g~~V~~arIa~GGmA 416 (493)
T COG4630 354 QDRQPGEFVEAVRVPLPAP----------SERFAAYKISKR-RDEDISAVCGAFALDLD------GGRVADARIAFGGMA 416 (493)
T ss_pred hccCcchhhhheecCCCCc----------chhhhhhhhhhh-ccchHHHHHhHheeeec------CCeeeeeeeecCccc
Confidence 8999999999999999886 577899999999 89999999999999997 469999999999999
Q ss_pred CCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCC-CHHHHhHHHHHHHHHHHHHHhhhh
Q 002932 485 TKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTS-IPAYRSSLAVGFLYEFFGSLTEMK 550 (864)
Q Consensus 485 ~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~-sa~YRr~la~~L~~r~l~~~~~~~ 550 (864)
.+ |.|+.++|++|.||+|++++++.|++++..+++|.+|++ |++||..+++||++|||++.....
T Consensus 417 aT-PkRA~~~EaAL~Gk~wteatve~A~aAl~~D~tPltD~RAsaeYR~l~a~nlL~RfflEt~~~~ 482 (493)
T COG4630 417 AT-PKRASEVEAALLGKPWTEATVEAAAAALAGDFTPLTDMRASAEYRALTAKNLLRRFFLETQGEA 482 (493)
T ss_pred cC-ccchHHHHHHHcCCCccHHHHHHHHHHHhcCCCcccchhhhHHHHHHHHHHHHHHHhhhccCCc
Confidence 99 999999999999999999999999999999999999995 999999999999999999887654
No 6
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=5.3e-111 Score=962.68 Aligned_cols=458 Identities=30% Similarity=0.518 Sum_probs=408.6
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i 93 (864)
|+|+|||+++++++++|+++|++|||+++||||||.||++|+||||||+|+++|+.+ ++.+++||||++|+++++|++|
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~i 79 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKAV 79 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCEE
Confidence 579999999999668999999999999999999999999999999999999998666 7888999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 002932 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (864)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (864)
+|||||++.++.+||||++|+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||||
T Consensus 80 ~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~~-----~~~~-------~~~~i~~~l~gnlCRCtgy 147 (467)
T TIGR02963 80 VTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKN-----SPAP-------SRADIEDALQGNLCRCTGY 147 (467)
T ss_pred EecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHhc-----CCCC-------CHHHHHHHhcCCcccCCCC
Confidence 999999864567999999999999999999999999999999954 4666 6999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccc-cCcceeecC-CceEEecCCHHH
Q 002932 174 RPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE-NSSAMLLDV-KGSWHSPISVQE 251 (864)
Q Consensus 174 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~~~-~~~~~~P~tl~e 251 (864)
++|++|++.++ +.. | +++|++.++ .+||. +... .+..+.+.+ +.+||+|+||+|
T Consensus 148 ~~i~~a~~~~~-~~~--------~-------------~~~~~~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~P~sl~E 203 (467)
T TIGR02963 148 RPILDAAEAAF-DYP--------C-------------SDPLDADRA-PIIER-LRALRAGETVELNFGGERFIAPTTLDD 203 (467)
T ss_pred HHHHHHHHHHH-hCC--------C-------------CCcCCcchh-hhhhH-HHhcCCCcceeecCCCceEECCCCHHH
Confidence 99999995443 211 1 233444433 25633 3321 233455654 789999999999
Q ss_pred HHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhhh
Q 002932 252 LRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEF 329 (864)
Q Consensus 252 al~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~ 329 (864)
|+++|+ ++++++++|||||+++ ++.+ ..++++|||++|+||++|+.++++|+|||+|||+++++.+++
T Consensus 204 a~~ll~-----~~~~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~~----- 273 (467)
T TIGR02963 204 LAALKA-----AHPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALAK----- 273 (467)
T ss_pred HHHHHh-----hCCCCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHHH-----
Confidence 999999 4688999999999988 4443 678999999999999999999999999999999999876654
Q ss_pred hhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc---CCC
Q 002932 330 HSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE---RPP 406 (864)
Q Consensus 330 ~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~---~~~ 406 (864)
.+|.|.+++++|||+||||+|||||||++++|. ||++|+|+||||+|+|.+.+|+|+||++|||. ++.
T Consensus 274 ------~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlALdA~v~l~~~~G~R~vpl~dF~~g~~kt~ 344 (467)
T TIGR02963 274 ------RYPELGELLRRFASLQIRNAGTLGGNIANGSPI---GDSPPALIALGARLTLRKGEGRRTLPLEDFFIDYGKTD 344 (467)
T ss_pred ------HhHHHHHHHHHhCCHHHcCceecccccccCCCc---hHHHHHHHHcCCEEEEEcCCCcEEEeHHHhhccccccc
Confidence 489999999999999999999999999999998 99999999999999999999999999999997 678
Q ss_pred CCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCC
Q 002932 407 LDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTK 486 (864)
Q Consensus 407 l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~ 486 (864)
|.++|||++|+||.+.. ..++.+||+++| +++|||+||+|+.++++ +++|+++||+||||+++
T Consensus 345 L~~~EiI~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~~~------~~~i~~~ria~Ggva~~ 407 (467)
T TIGR02963 345 RQPGEFVEALHVPRPTP----------GERFRAYKISKR-FDDDISAVCAAFNLELD------GGVVAEIRIAFGGMAAT 407 (467)
T ss_pred CCCCceEEEEEecCCCC----------CCceEEEEeccc-ccccceeeEEEEEEEEc------CCeEeEEEEEEecCCCC
Confidence 99999999999997654 456778999999 89999999999999996 36899999999999999
Q ss_pred cceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHH
Q 002932 487 HAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGS 545 (864)
Q Consensus 487 ~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~r~l~~ 545 (864)
|+|++++|++|.|++|+++++++|++++.+++.|.+|. +|++||++|+.+|++|++.+
T Consensus 408 -p~r~~~~E~~L~G~~~~~~~l~~a~~~l~~~~~p~~d~r~sa~YR~~la~~l~~r~~~~ 466 (467)
T TIGR02963 408 -PKRAAATEAALLGKPWNEATVEAAMAALAGDFTPLSDMRASAEYRLLTAKNLLRRFFLE 466 (467)
T ss_pred -ceehHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887 59999999999999999976
No 7
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=1.1e-91 Score=858.08 Aligned_cols=420 Identities=22% Similarity=0.300 Sum_probs=362.0
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccC-CCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLG-CGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~g-C~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
|+|+|+|||++++++ ++|+++|+++||+ +||||+|.| |++|.||||||+| ||++|+||++|+.+++|
T Consensus 1 ~~i~~~vNg~~~~~~-~~~~~~l~~~LR~-~~~~~~k~g~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g 68 (956)
T PRK09800 1 MIIHFTLNGAPQELT-VNPGENVQKLLFN-MGMHSVRNSDDGFGFAGSDAIIF----------NGNIVNASLLIAAQLEK 68 (956)
T ss_pred CeEEEEECCEEEEEe-cCCCCCHHHHHHH-CCCCccccCCCCcccCCCCEEEE----------CCeEEeHHHHHHHHcCC
Confidence 569999999999998 8999999999999 999999998 8999999999999 89999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (864)
++|+|||||+. ++.|||+|+||+++|++|||||||||||++++||++ +|+| |++||+++|+||||||
T Consensus 69 ~~i~Tvegl~~-~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~~-----~~~p-------~~~~i~~~l~gnlCRC 135 (956)
T PRK09800 69 ADIRTAESLGK-WNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDR-----IAAP-------TREEIDDALSGLFSRD 135 (956)
T ss_pred CEEEecCCcCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhc-----CCCC-------CHHHHHHHHhhchhcc
Confidence 99999999985 568999999999999999999999999999999953 5666 6999999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHH
Q 002932 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQ 250 (864)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~tl~ 250 (864)
|||++|++|++.++...
T Consensus 136 tgy~~i~~av~~~~~~~--------------------------------------------------------------- 152 (956)
T PRK09800 136 AGWQQYYQVIELAVARK--------------------------------------------------------------- 152 (956)
T ss_pred CCcHHHHHHHHHHHHhh---------------------------------------------------------------
Confidence 99999999998643110
Q ss_pred HHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhhhh
Q 002932 251 ELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFH 330 (864)
Q Consensus 251 eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 330 (864)
. .
T Consensus 153 ------~-------------------------~----------------------------------------------- 154 (956)
T PRK09800 153 ------N-------------------------N----------------------------------------------- 154 (956)
T ss_pred ------c-------------------------c-----------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCC
Q 002932 331 SEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSR 410 (864)
Q Consensus 331 ~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~~~~l~~~ 410 (864)
+. + +
T Consensus 155 ------------------------------------~~---~--------------------------------~----- 158 (956)
T PRK09800 155 ------------------------------------PQ---A--------------------------------T----- 158 (956)
T ss_pred ------------------------------------cc---c--------------------------------c-----
Confidence 00 0 0
Q ss_pred ceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCccee
Q 002932 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIR 490 (864)
Q Consensus 411 Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~r 490 (864)
. . + .
T Consensus 159 ------------~----------~----------~-----------------~--------------------------- 162 (956)
T PRK09800 159 ------------I----------D----------I-----------------A--------------------------- 162 (956)
T ss_pred ------------c----------c----------c-----------------c---------------------------
Confidence 0 0 0 0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcccc
Q 002932 491 ARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDS 570 (864)
Q Consensus 491 a~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~sa~YRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (864)
T Consensus 163 -------------------------------------------------------------------------------- 162 (956)
T PRK09800 163 -------------------------------------------------------------------------------- 162 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceecc
Q 002932 571 HVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKG 650 (864)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ 650 (864)
.+.+++++.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++
T Consensus 163 ------------------------~~~~~~~~~VGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahArI~s 217 (956)
T PRK09800 163 ------------------------PTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRV-TADACVIKMLRSPHAHALITH 217 (956)
T ss_pred ------------------------cccccccccCCCCCCCcChHhhCcccccccccCC-CCCCEEEEEeecCCCcEEEee
Confidence 0001223458999999999999999999999997 789999999999999999999
Q ss_pred CCCCcCCCCCCEEEEEEcCCCCC-----CCCCCCCcccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEe
Q 002932 651 IEFKSESVPDVVTALLSYKDIPE-----GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (864)
Q Consensus 651 ID~s~A~~~pGVv~vvt~~Dip~-----~g~n~~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~ 725 (864)
||+++|++||||++|+|++|+|. .+..++ ....+.++|++++|+|+||||++|||+|+++|++|+++|+|+|
T Consensus 218 ID~s~A~a~pGV~~Vvt~~Dvp~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~V~Vey- 294 (956)
T PRK09800 218 LDVSKAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEY- 294 (956)
T ss_pred eEHHHHHhCCCeEEEEcHHHCCcccccccCcCCC--CCCCCCccccCCeEEEcCCeEEEEEECCHHHHHHHhcCCceEE-
Confidence 99999999999999999999983 111111 1112233455999999999999999999999999999999999
Q ss_pred cCCCCCccCCHHHHHhcCCC--ccC------------------------------------CCcc---ccCCCCChhhhc
Q 002932 726 MGNLEPPILSVEEAVDRSSL--FEV------------------------------------PSFL---YPKPVGDISKGM 764 (864)
Q Consensus 726 ~e~l~p~v~~~~~Al~~~~~--~~~------------------------------------~~~~---~~~~~Gd~~~a~ 764 (864)
|+| |+++|+++|++++++ |+. +.|+ .....||++++|
T Consensus 295 -e~L-p~v~d~~~Al~~~a~~vh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af 372 (956)
T PRK09800 295 -EVL-KPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGF 372 (956)
T ss_pred -EeC-CccCCHHHHhcCCCceecccccccccccccccccccccccccccccccccccccCCCCceeeeccccCCCHHHHH
Confidence 889 999999999998874 321 1222 234679999999
Q ss_pred ccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCC
Q 002932 765 NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAI 844 (864)
Q Consensus 765 ~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~ 844 (864)
++++++ ||++|++++|+|+||||++|+|+|++ |+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|..
T Consensus 373 ~~a~~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVrV~~~~vGGgFG~K~~ 450 (956)
T PRK09800 373 ADADVI-IERTYNSTQAQQCPTETHICFTRMDG-DRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQD 450 (956)
T ss_pred hhCCEE-EEEEEEeCCcccccCCCceEEEEEeC-CeeEEEECCCcHHHHHHHHHHHHCCCHHHeEEEcCCCCccCcCccc
Confidence 999996 99999999999999999999999985 4899999999999999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 002932 845 KAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 845 ~~~~~~~~aAlaA~~t~~~ 863 (864)
.. ....||++|+++|||
T Consensus 451 ~~--~e~~aA~aA~~~grP 467 (956)
T PRK09800 451 IL--LEEVCAWATCVTGRP 467 (956)
T ss_pred cc--HHHHHHHHHHHhCCC
Confidence 43 345689999999998
No 8
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=2.6e-89 Score=833.21 Aligned_cols=408 Identities=35% Similarity=0.548 Sum_probs=354.6
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i 93 (864)
++|+|||+. ++ ++|+++|+++||+++||||+|.||++|.||||||+| ||++|||||+|+.+++|++|
T Consensus 1 ~~~~~ng~~--~~-~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~----------dg~~~~sc~~~~~~~~g~~i 67 (848)
T TIGR03311 1 YEFIVNGRE--VD-VNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV----------NGKAVRACRFTTAKLAGKEI 67 (848)
T ss_pred CEEEECCEE--ee-CCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE----------CCeEEehhhhhHHhcCCCEE
Confidence 379999984 44 679999999999999999999999999999999999 79999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 002932 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (864)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (864)
+|||||++ ..+||+|+||+++|++|||||||||||++++||++ +|+| ++++|+++|+|||||||||
T Consensus 68 ~T~egl~~--~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~~-----~~~p-------~~~~i~~~l~gnlcrctgy 133 (848)
T TIGR03311 68 TTVEGLTE--REKDVYAWAFAKAGAVQCGFCIPGMVISAKALLDK-----NPNP-------TEAEIKKALKGNICRCTGY 133 (848)
T ss_pred EecCCCCC--CCCCHHHHHHHHcCCCcCCCCchhHHHHHHHHHhc-----CCCC-------CHHHHHHHHhcCccccCCh
Confidence 99999985 34799999999999999999999999999999943 4666 5999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHHHHH
Q 002932 174 RPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELR 253 (864)
Q Consensus 174 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~tl~eal 253 (864)
++|++|++.++..
T Consensus 134 ~~i~~a~~~~~~~------------------------------------------------------------------- 146 (848)
T TIGR03311 134 VKIIKAVRLAAKA------------------------------------------------------------------- 146 (848)
T ss_pred HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence 9999999854310
Q ss_pred HHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhhhhhhh
Q 002932 254 NVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEA 333 (864)
Q Consensus 254 ~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~ 333 (864)
++ .
T Consensus 147 --~~-----------------------~---------------------------------------------------- 149 (848)
T TIGR03311 147 --FR-----------------------E---------------------------------------------------- 149 (848)
T ss_pred --hc-----------------------c----------------------------------------------------
Confidence 00 0
Q ss_pred hhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCCceE
Q 002932 334 LMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSIL 413 (864)
Q Consensus 334 ~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~~~~l~~~Eii 413 (864)
.+ +
T Consensus 150 --------------------------------~~----~----------------------------------------- 152 (848)
T TIGR03311 150 --------------------------------EI----E----------------------------------------- 152 (848)
T ss_pred --------------------------------cc----c-----------------------------------------
Confidence 00 0
Q ss_pred EEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHH
Q 002932 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARR 493 (864)
Q Consensus 414 ~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~ 493 (864)
. . .
T Consensus 153 ---------~---------------------~----------------------------------------~------- 155 (848)
T TIGR03311 153 ---------P---------------------P----------------------------------------R------- 155 (848)
T ss_pred ---------c---------------------c----------------------------------------c-------
Confidence 0 0 0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCccccccc
Q 002932 494 VEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQ 573 (864)
Q Consensus 494 ~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~sa~YRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (864)
T Consensus 156 -------------------------------------------------------------------------------- 155 (848)
T TIGR03311 156 -------------------------------------------------------------------------------- 155 (848)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCC
Q 002932 574 QNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF 653 (864)
Q Consensus 574 ~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~ 653 (864)
. + +. ..||++++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+
T Consensus 156 ---------~------------~-~~--~~iG~~~~R~d~~~kvtG~~~Y~~Di~-~pgmL~a~~vrSp~ahA~I~~ID~ 210 (848)
T TIGR03311 156 ---------G------------E-PK--GKLGENFPRVDAVPKVLGEGVYVDDMQ-IEGMLYGSALRSKYPRALVKSIDI 210 (848)
T ss_pred ---------c------------c-cc--CCCCCccCCcChhhhCcccccccccCC-CCCCEEEEEEeCCCCCEEEEeeEH
Confidence 0 0 00 137999999999999999999999997 799999999999999999999999
Q ss_pred CcCCCCCCEEEEEEcCCCCCCCCC-CCCcccCCCcc-ccc-CCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCC
Q 002932 654 KSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEP-LFA-DELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLE 730 (864)
Q Consensus 654 s~A~~~pGVv~vvt~~Dip~~g~n-~~~~~~~~~~p-~~a-~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~ 730 (864)
|+|++||||++|+|++|+| +.+ .+. ...++| +|+ +++|+|+|||||+|+|+|+++|++|+++|+|+| +++
T Consensus 211 s~A~a~PGV~aVvt~~Dip--~~~~~g~--~~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~~~V~Vey--e~l- 283 (848)
T TIGR03311 211 TVALKHPGVVAVLTAKDIP--GNRKIGH--IFKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKVDY--EEL- 283 (848)
T ss_pred HHHHhCCCcEEEEeHHHCC--CccCCCC--CCCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHhCCCcEEE--ecC-
Confidence 9999999999999999998 422 222 223444 333 589999999999999999999999999999999 888
Q ss_pred CccCCHHHHHhcCCC--ccCCCcc---ccCCCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEe
Q 002932 731 PPILSVEEAVDRSSL--FEVPSFL---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYS 805 (864)
Q Consensus 731 p~v~~~~~Al~~~~~--~~~~~~~---~~~~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~ 805 (864)
|+++|+++|+++++. |+ ..|+ ....+||++++|++|+++ ||++|++++|+|+||||++|+|+|++ |+|+||+
T Consensus 284 p~v~d~~~A~~~~a~~i~~-~~Nv~~~~~~~~Gdv~~af~~A~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~-~~l~v~~ 360 (848)
T TIGR03311 284 PPLTSPEEALAEGAPAIHP-KGNILSEEHVVRGDAEEALENSAYV-VTNHYSTPFTEHAFLEPESALAVPEG-DGVIIYT 360 (848)
T ss_pred CCcCCHHHHhcCCCCeECC-CCCCcceeeecCCCHHHHhhcCCeE-EEEEEEECCEeeeecCCceEEEEEeC-CeEEEEE
Confidence 899999999998863 43 2343 235789999999999996 99999999999999999999999985 4799999
Q ss_pred CCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 806 SIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 806 stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|||+|+.+|..+|++||||++||||+++++|||||+|.... . ...||++|+++|||
T Consensus 361 stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K~~~~-~-~~~aA~~A~~~gRP 416 (848)
T TIGR03311 361 STQGVYDEQRELASLLGLPKEKIRVINKFVGGGFGGKEDMS-V-QHHAALLAWATKRP 416 (848)
T ss_pred CCcCHHHHHHHHHHHhCCChHHEEEEeCCCCCcCCcccccc-H-HHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999853 3 45788999999998
No 9
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=2.8e-89 Score=837.70 Aligned_cols=416 Identities=23% Similarity=0.308 Sum_probs=358.2
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCccccc-CCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeE
Q 002932 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL-GCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLIT 94 (864)
Q Consensus 16 ~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~-gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~ 94 (864)
|+|||++++++ ++|+++|+++||+. ||||+|. ||++|.||||||+| ||++|+||++|+.+++|++|+
T Consensus 1 ~~~Ng~~~~~~-~~~~~~l~~~LR~~-~l~~~k~~~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g~~i~ 68 (951)
T TIGR03313 1 FTLNGAPQTLE-CKLGENVQTLLFNM-GMHSVRNSDDGFGFAGSDAILF----------NGVLKNASLLIAAQLEGAEVR 68 (951)
T ss_pred CEECCEEEEEe-cCCCCCHHHHHHHC-CCCCCcCCCCCcccCCCCEEEE----------CCeEeeHHHHHHHHcCCCEEE
Confidence 78999999998 89999999999996 9999999 79999999999999 899999999999999999999
Q ss_pred EecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 002932 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (864)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~ 174 (864)
|||||+. .+.+||+|+||+++|++|||||||||||++++||++ +|+| +++||+++|+|||||||||+
T Consensus 69 Tiegl~~-~~~~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~~-----~~~p-------~~~~i~~~l~gnlcrctgy~ 135 (951)
T TIGR03313 69 TAESLGQ-WNQLSLVQQAMVDVGVVQSGYNDPAAALILTDLLDR-----NTQP-------NRAEIDDALSGLFSRDAGYQ 135 (951)
T ss_pred ecCcCCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhc-----CCCC-------CHHHHHHHHhcceeccCCcH
Confidence 9999985 568999999999999999999999999999999944 5666 59999999999999999999
Q ss_pred hHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHHHHHH
Q 002932 175 PIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELRN 254 (864)
Q Consensus 175 ~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~tl~eal~ 254 (864)
+|++|++.++...
T Consensus 136 ~i~~av~~~~~~~------------------------------------------------------------------- 148 (951)
T TIGR03313 136 QFYQVIELAVKRL------------------------------------------------------------------- 148 (951)
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------------------
Confidence 9999998643110
Q ss_pred HHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhhhhhhhh
Q 002932 255 VLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEAL 334 (864)
Q Consensus 255 ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~ 334 (864)
. +
T Consensus 149 --~-----------------------~----------------------------------------------------- 150 (951)
T TIGR03313 149 --K-----------------------D----------------------------------------------------- 150 (951)
T ss_pred --c-----------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred hhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCCceEE
Q 002932 335 MVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILL 414 (864)
Q Consensus 335 ~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~~~~l~~~Eii~ 414 (864)
+. +
T Consensus 151 --------------------------------~~---~------------------------------------------ 153 (951)
T TIGR03313 151 --------------------------------PE---H------------------------------------------ 153 (951)
T ss_pred --------------------------------cc---c------------------------------------------
Confidence 00 0
Q ss_pred EEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHH
Q 002932 415 SVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRV 494 (864)
Q Consensus 415 ~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~ 494 (864)
. ... + ..|
T Consensus 154 --------~-----------~~~---~-~~~------------------------------------------------- 161 (951)
T TIGR03313 154 --------K-----------QSI---A-PEF------------------------------------------------- 161 (951)
T ss_pred --------c-----------ccc---c-Ccc-------------------------------------------------
Confidence 0 000 0 000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcccccccc
Q 002932 495 EEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQ 574 (864)
Q Consensus 495 E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~~sa~YRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (864)
T Consensus 162 -------------------------------------------------------------------------------- 161 (951)
T TIGR03313 162 -------------------------------------------------------------------------------- 161 (951)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCC
Q 002932 575 NHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFK 654 (864)
Q Consensus 575 ~~~~~~~~~~~~~~s~g~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s 654 (864)
+++++.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||++
T Consensus 162 -----------------------~~~~~~iGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~v~rSP~ahArI~sID~s 217 (951)
T TIGR03313 162 -----------------------RDDLTIIGKNCPKIDAAKMVQAKPCYVEDRV-PADACVIKMLRSPHPHAWITHLDVS 217 (951)
T ss_pred -----------------------ccccccCCCCCcCcChHhhCccCccccccCC-CCCCEEEEEEecCCCcEEEEeeEHH
Confidence 1223458999999999999999999999997 7899999999999999999999999
Q ss_pred cCCCCCCEEEEEEcCCCCC-----CCCCCCCcccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCC
Q 002932 655 SESVPDVVTALLSYKDIPE-----GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (864)
Q Consensus 655 ~A~~~pGVv~vvt~~Dip~-----~g~n~~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l 729 (864)
+|++||||++|+|++|+|. .+.+.+ ....++++|++++|+|+||||++|||+|+|+|++|+++|+|+| |+|
T Consensus 218 ~A~a~pGV~~Vvt~~D~p~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~I~Vey--e~L 293 (951)
T TIGR03313 218 KAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGQKMRHVGDRVAAVVAESEEIALHALKLIEVEY--DVL 293 (951)
T ss_pred HHHhCCCeEEEEeHHHCCccccCCCCccCC--CCCCCcccccCCeEEEcCCEEEEEEECCHHHHHHHhcCCeeEE--EeC
Confidence 9999999999999999982 111111 0112344568899999999999999999999999999999999 888
Q ss_pred CCccCCHHHHHhcCCC--ccC------------------------------------CCcc---ccCCCCChhhhcccCC
Q 002932 730 EPPILSVEEAVDRSSL--FEV------------------------------------PSFL---YPKPVGDISKGMNEAD 768 (864)
Q Consensus 730 ~p~v~~~~~Al~~~~~--~~~------------------------------------~~~~---~~~~~Gd~~~a~~~a~ 768 (864)
|+++|+++|++++++ |+. +.|+ .....||++++|++|+
T Consensus 294 -p~v~d~~~Al~~~ap~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~~A~ 372 (951)
T TIGR03313 294 -TPVMSIDEAMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAASVHGHIGDLNKGFAEAD 372 (951)
T ss_pred -CccCCHHHHhcCCCCeeccccccccccccccccccccccccccccccccccccccCCCceeeeccccCCCHHHHHhcCC
Confidence 899999999998874 321 0121 1246799999999999
Q ss_pred EEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCChH
Q 002932 769 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMP 848 (864)
Q Consensus 769 ~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~ 848 (864)
++ ||++|++++|+|+||||++|+|+|++ |+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|....
T Consensus 373 ~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~-- 448 (951)
T TIGR03313 373 VI-IERTYESTQAQQCPTETHICFTYMDG-ERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGGFGSKQDIL-- 448 (951)
T ss_pred EE-EEEEEEECCEeeecCCCceEEEEEcC-CeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEEcCCCCcCcCCccccc--
Confidence 96 99999999999999999999999985 489999999999999999999999999999999999999999998643
Q ss_pred HHHHHHHHHHHcCCC
Q 002932 849 FNIVGATIELLTVYR 863 (864)
Q Consensus 849 ~~~~aAlaA~~t~~~ 863 (864)
....||++|+++|||
T Consensus 449 ~e~~aA~aA~~~GrP 463 (951)
T TIGR03313 449 LEEVCAWATWVTGRP 463 (951)
T ss_pred HHHHHHHHHHHhCCC
Confidence 345689999999998
No 10
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=100.00 E-value=2.8e-55 Score=477.12 Aligned_cols=274 Identities=23% Similarity=0.288 Sum_probs=249.1
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEec-CCcEEecccccHHHH
Q 002932 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRD-QTGIEIGATVTISKA 318 (864)
Q Consensus 242 ~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~-~~~l~IGA~vTl~~l 318 (864)
+|++|+|++||+++|+ +++++++|||||||++ ++.+ ..|+++|||++|+||+.|+.. +++|+|||+||+++|
T Consensus 6 ~~~~P~sl~Ea~~ll~-----~~~~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLA-----DNPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHH-----hCCCCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 7999999999999999 4578999999999988 4544 678999999999999999965 577999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEeh
Q 002932 319 IEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLML 398 (864)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl 398 (864)
+++- . ..+.+|.|.+++++||++||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+||+
T Consensus 81 ~~~~--~-------i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---sD~~~~Llal~A~v~i~~~~g~R~vp~ 148 (291)
T PRK09971 81 IEDP--I-------IQKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---ADSAPPLFALDAKLEIHSPNGVRFVPI 148 (291)
T ss_pred hcCh--H-------HHHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---hhHHHHHHHcCCEEEEEcCCCcEEEEH
Confidence 9841 1 123589999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeee
Q 002932 399 EEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 475 (864)
Q Consensus 399 ~dF~~---~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~ 475 (864)
+|||. ++.|.++|||++|+||.+... +..+.+||+++| +++|||+||+|+.++++ +++|++
T Consensus 149 ~df~~g~~~t~l~~~Eil~~I~iP~~~~~---------~~~~~~~K~~~R-~~~~~a~v~~a~~~~~~------~g~i~~ 212 (291)
T PRK09971 149 NGFYTGPGKVSLEHDEILVAFIIPPEPYE---------HAGGAYIKYAMR-DAMDIATIGCAVLCRLD------NGNFED 212 (291)
T ss_pred HHhcCCccccccCCCceEEEEEeCCCCCC---------CCceEEEEEccc-chhhHhHheeEEEEEEc------CCEEEE
Confidence 99997 678999999999999975431 345667899999 89999999999999985 368999
Q ss_pred eEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 002932 476 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (864)
Q Consensus 476 ~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~r~l~~~~~~ 549 (864)
+||+|||++++ |+|+.++|++|.|+.|++++++++.+.+.+++.|.+|. +|++||++|+.+|++|++.++..+
T Consensus 213 ~ria~G~v~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~l~~r~l~~~~~~ 286 (291)
T PRK09971 213 LRLAFGVAAPT-PIRCQHAEQTAKGAPLNLETLEAIGELVLQDVAPRSSWRASKEFRLHLIQELTKRVIKEAVAA 286 (291)
T ss_pred EEEEEEcccCc-eeeHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999987 599999999999999999998765
No 11
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=2.3e-55 Score=422.26 Aligned_cols=147 Identities=38% Similarity=0.669 Sum_probs=139.1
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i 93 (864)
|+|+|||++++++ ++|+++|+||||++++|||+|.||++|.||||||+| ||++||||++|+.+++|++|
T Consensus 2 i~~~vNG~~~~~~-~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv----------dg~~v~SCl~~~~~~~G~~V 70 (148)
T TIGR03193 2 LRLTVNGRWREDA-VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV----------DGRPRLACSTLAHRVAGRKV 70 (148)
T ss_pred EEEEECCEEEEee-cCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE----------CCeEeeccHhhHhhcCCCcE
Confidence 7899999999997 899999999999999999999999999999999999 79999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 002932 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (864)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (864)
+|||||++ .+.+||+|+||+++|++|||||||||||++++||++ +|+| +++||+++|+|||||||||
T Consensus 71 ~TiEgl~~-~~~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~~-----~p~p-------s~~ei~~al~GnLCRCTGY 137 (148)
T TIGR03193 71 ETVEGLAT-NGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLRR-----NPSP-------SRDEIRAALAGNLCRCTGY 137 (148)
T ss_pred EEeCCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-------CHHHHHHHHcCCccCCCCC
Confidence 99999985 568999999999999999999999999999999943 5666 5999999999999999999
Q ss_pred hhHHHHHHHhh
Q 002932 174 RPIADACKSFA 184 (864)
Q Consensus 174 ~~i~~a~~~~~ 184 (864)
++|++|++.++
T Consensus 138 ~~I~~Av~~aa 148 (148)
T TIGR03193 138 VKIIESVEAAA 148 (148)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 12
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=1.8e-54 Score=420.28 Aligned_cols=151 Identities=40% Similarity=0.682 Sum_probs=139.2
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
.+.|+|+|||++++++ ++|+++|+||||+. ||||||.||++|+||||||+| ||++||||++|+.+++|
T Consensus 6 ~~~i~~~vNG~~~~~~-~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlv----------dg~~v~SCl~~a~~~~G 73 (159)
T PRK09908 6 TITIECTINGMPFQLH-AAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLV----------DGTAIDSCLYLAAWAEG 73 (159)
T ss_pred ceeEEEEECCEEEEEe-cCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEE----------CCcEeehhHhhHHHhCC
Confidence 3579999999999997 89999999999985 999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (864)
++|+|||||++ .+.+||+|+||+++|++|||||||||||++++||++ +|.| .++++||+++|+||||||
T Consensus 74 ~~V~TiEGl~~-~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~-----~~~~-----~~s~~eI~~al~GNlCRC 142 (159)
T PRK09908 74 KEIRTLEGEAK-GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK-----PREK-----PLTITEIRRGLAGNLCRC 142 (159)
T ss_pred CEEEeecCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-----CCCHHHHHHHHcCCccCC
Confidence 99999999986 568999999999999999999999999999999954 3421 136999999999999999
Q ss_pred CCChhHHHHHHHhh
Q 002932 171 TGYRPIADACKSFA 184 (864)
Q Consensus 171 tgy~~i~~a~~~~~ 184 (864)
|||++|++|++.+-
T Consensus 143 TGY~~I~~Av~~~~ 156 (159)
T PRK09908 143 TGYQMIVNTVLDCE 156 (159)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998753
No 13
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=2e-53 Score=515.77 Aligned_cols=251 Identities=38% Similarity=0.595 Sum_probs=227.7
Q ss_pred CCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCccc
Q 002932 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTI 683 (864)
Q Consensus 604 vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~ 683 (864)
|||+++|+|+..||||+++|++|+..+|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|. ....
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p--~~~~-~g~~ 77 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIP--GEND-ISPI 77 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCC--CCCC-CCCC
Confidence 699999999999999999999999536899999999999999999999999999999999999999998 4443 1223
Q ss_pred CCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCCccCCCccccCCCCChhhh
Q 002932 684 FGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKG 763 (864)
Q Consensus 684 ~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a 763 (864)
..++|+|++++|+|+||||++|||+|+++|++|+++|+|+| |++ |+++|+++|++++++...+.. ....||++++
T Consensus 78 ~~~~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~y--e~l-p~v~d~~~Al~~~a~~~~~~~--~~~~Gd~~~a 152 (758)
T TIGR02965 78 IHDDPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEY--EEL-PAVLDIEEALAAGSRFVTPPL--TLERGDAEAA 152 (758)
T ss_pred CCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEE--EcC-CccCCHHHHhcCCCCcccCcc--cccCCCHHHH
Confidence 36899999999999999999999999999999999999999 888 899999999988864211111 3578999999
Q ss_pred cccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCC
Q 002932 764 MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 843 (864)
Q Consensus 764 ~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGgK~ 843 (864)
|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||+++|||+++++|||||+|.
T Consensus 153 f~~a~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~ 231 (758)
T TIGR02965 153 LAAAPHR-LSGEMRIGGQEHFYLEGQIALAVPGEDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231 (758)
T ss_pred HhhCCEE-EEEEEEECCEeEEecCCceEEEEEcCCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccc
Confidence 9999996 999999999999999999999999966789999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCC
Q 002932 844 IKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 844 ~~~~~~~~~aAlaA~~t~~~ 863 (864)
+.....++.||++|+++|||
T Consensus 232 ~~~~~~~~~aa~~A~~~grP 251 (758)
T TIGR02965 232 TQANLFACLAAVAARKTGRP 251 (758)
T ss_pred cccchHHHHHHHHHHHHCCC
Confidence 86445567899999999998
No 14
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=1.1e-53 Score=409.34 Aligned_cols=152 Identities=45% Similarity=0.812 Sum_probs=144.1
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
++.|+|+|||++++++ ++|+++|+|+||++++|||+|.||+.|.||||||+| ||++|+||++|+++++|
T Consensus 1 ~~~i~ltvNG~~~~~~-~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv----------DG~~v~SCl~~a~~~~G 69 (156)
T COG2080 1 KMPITLTVNGEPVELD-VDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV----------DGEAVNSCLTLAVQAEG 69 (156)
T ss_pred CCcEEEEECCeEEEEE-eCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE----------CCeEehHHHHHHHHhCC
Confidence 4789999999999998 899999999999999999999999999999999999 89999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (864)
++|+|||||+..+..|||+|+||.+++++|||||||||||++++||++ +|.| |++||+++|+||+|||
T Consensus 70 ~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~-----~~~p-------s~~eI~~~lsGnlCRC 137 (156)
T COG2080 70 AEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDR-----NPAP-------TDEEIREALSGNLCRC 137 (156)
T ss_pred CeEEEeecccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHh-----CCCC-------CHHHHHHHHhcCcccc
Confidence 999999999965677899999999999999999999999999999954 4666 6999999999999999
Q ss_pred CCChhHHHHHHHhhh
Q 002932 171 TGYRPIADACKSFAA 185 (864)
Q Consensus 171 tgy~~i~~a~~~~~~ 185 (864)
|||..|++|++.++.
T Consensus 138 t~Y~~I~~Ai~~aa~ 152 (156)
T COG2080 138 TGYQNIVAAILDAAE 152 (156)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 15
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=1.6e-53 Score=413.22 Aligned_cols=149 Identities=36% Similarity=0.728 Sum_probs=140.3
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~ 91 (864)
..|+|+|||++++++ ++|+++|++|||++++|+|||.||++|.||||||+| |+++|+||++|+.+++|+
T Consensus 2 ~~i~f~vNG~~~~~~-~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv----------dG~~v~SCl~~~~~~~G~ 70 (151)
T TIGR03198 2 EQFRFTVNGQAWEVA-AVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI----------DGKLANACLTMAYQADGH 70 (151)
T ss_pred ccEEEEECCEEEEee-cCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE----------CCcEEechHHHHHHhcCC
Confidence 358999999999997 799999999999999999999999999999999999 789999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 002932 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (864)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCt 171 (864)
+|+|||||+. +.+||+|+||+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||
T Consensus 71 ~v~TiEgl~~--~~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~~-----~p~p-------~~~ei~~al~gnlCRCt 136 (151)
T TIGR03198 71 EITTIEGIAE--NELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRE-----TPQP-------SDEDMEEGLSGNLCRCT 136 (151)
T ss_pred EEEecCCcCC--CCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-------CHHHHHHHHcCCCcCCC
Confidence 9999999973 57999999999999999999999999999999954 4666 59999999999999999
Q ss_pred CChhHHHHHHHhhh
Q 002932 172 GYRPIADACKSFAA 185 (864)
Q Consensus 172 gy~~i~~a~~~~~~ 185 (864)
||++|++|++.++.
T Consensus 137 gY~~I~~Av~~~~~ 150 (151)
T TIGR03198 137 GYGGIIRSACRIRR 150 (151)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998763
No 16
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=4.4e-52 Score=453.06 Aligned_cols=274 Identities=21% Similarity=0.253 Sum_probs=241.5
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEecCCcEEecccccHHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (864)
.|+|++|+|++||+++|++ .+++++++|||||++ ++.+ ..|+++|||++|+||++|+.++++|+|||+||+++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAA-----HPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhh-----CCCCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 5799999999999999994 578999999999988 4443 67899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC------------------------------
Q 002932 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR------------------------------ 367 (864)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp------------------------------ 367 (864)
|+++-. ....+|.|.++++.||++||||+||||||||+++|
T Consensus 79 l~~~~~---------i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~~~ 149 (321)
T TIGR03195 79 LAEDAL---------VRTRWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVAPK 149 (321)
T ss_pred HhhChh---------hHhHhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCccccccCC
Confidence 988621 11258999999999999999999999999996543
Q ss_pred -----CCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc-----CCCCCCCceEEEEEcCCCCccCCcccCCCcceEE
Q 002932 368 -----KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE-----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLF 437 (864)
Q Consensus 368 -----~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~~-----~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~ 437 (864)
..++||++|+|+||||+|+|.+..|+|+||++|||. ++.|+++|||++|+||.... ..+
T Consensus 150 ~~~c~a~p~sD~~~~LlAldA~v~i~~~~g~R~vpl~dF~~~~g~~~t~L~~~Eiit~I~iP~~~~-----------~~~ 218 (321)
T TIGR03195 150 SDRCYAAFSGDVAPALLVLDAEAEIVGPAGVRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPTGG-----------WTS 218 (321)
T ss_pred CccccCCCchHHHHHHHHcCCEEEEEeCCccEEEEHHHHhcccCCccccCCCCCeEEEEEecCCCC-----------Ccc
Confidence 123489999999999999999999999999999997 46899999999999996532 334
Q ss_pred EEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 002932 438 ETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD 517 (864)
Q Consensus 438 ~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ 517 (864)
.++|+.+| .+.||+++++|+.++.+ +++|+++||+|||++++ |+|++++ ++|.|+.|+++++++|.+++.+
T Consensus 219 ~y~k~~~r-~a~~~~~~~vav~l~~~------~~~i~~~ria~Ggva~~-p~r~~~~-e~l~G~~~~~~~~~~a~~~~~~ 289 (321)
T TIGR03195 219 AYSKVRVR-GAIDFPLAGVAVALQRD------GDRIAGLRVALTGTNSR-PLMVPGT-DALAGRPLDDAAAEEIARLVRK 289 (321)
T ss_pred EEEEEecC-ccccceeEEEEEEEEeC------CCeEEEEEEEEECccCc-eeehHHH-HHhcCCCCCHHHHHHHHHHHHh
Confidence 45677666 78999999999998875 46899999999999999 9999999 5589999999999999999999
Q ss_pred cCCCCCCC-CCHHHHhHHHHHHHHHHHHHHh
Q 002932 518 SVVPEDGT-SIPAYRSSLAVGFLYEFFGSLT 547 (864)
Q Consensus 518 e~~p~~~~-~sa~YRr~la~~L~~r~l~~~~ 547 (864)
++.|.++. +|++|||.|+.+|++|++.+++
T Consensus 290 ~~~p~~d~~~s~~YRr~l~~~l~~r~~~~~~ 320 (321)
T TIGR03195 290 TSQPMRTTLMGVKYRRRVLLAIARRLVDQLW 320 (321)
T ss_pred hCCCccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999887 5999999999999999998764
No 17
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=8.5e-53 Score=509.82 Aligned_cols=249 Identities=26% Similarity=0.406 Sum_probs=226.5
Q ss_pred CCCCccc-ccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCC-CCC
Q 002932 603 PVGEPIT-KSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGS 680 (864)
Q Consensus 603 ~vG~~~~-r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n-~~~ 680 (864)
.|||+++ |+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.| .+.
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p--~~~~~g~ 78 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLR-FPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVP--GLARFGI 78 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCC-CCCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCC--CCCCCCc
Confidence 4899999 9999999999999999997 7999999999999999999999999999999999999999998 333 222
Q ss_pred cccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCC--ccCCCccc---cC
Q 002932 681 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFLY---PK 755 (864)
Q Consensus 681 ~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~~---~~ 755 (864)
...++|+|++++|+|+|||||+|||+|+++|++|+++|+|+| |++ |+++|+++|+++++. |+ +.|+. ..
T Consensus 79 --~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~a~~~~a~~i~~-~~ni~~~~~~ 152 (768)
T TIGR03196 79 --IIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY--EEL-APMDDPDKALQPDAEPLHE-AGNILHEAEF 152 (768)
T ss_pred --cCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEE--EeC-CCcCCHHHHhcCCCCeECC-CCcCcceeee
Confidence 235899999999999999999999999999999999999999 788 889999999987653 43 24432 35
Q ss_pred CCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCc
Q 002932 756 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 835 (864)
Q Consensus 756 ~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~ 835 (864)
..||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++
T Consensus 153 ~~Gd~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~v 231 (768)
T TIGR03196 153 RHGDPDEGFAAGDTV-FEDQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGM 231 (768)
T ss_pred ccCCHhHHhccCCEE-EEEEEEeCCeeeeecCCceEEEEEcCCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCC
Confidence 789999999999996 9999999999999999999999998667899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 836 GGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 836 GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|||||+|.+.. . .+.||++|+++|||
T Consensus 232 GGgFG~K~~~~-~-~~~aa~~A~~~gRP 257 (768)
T TIGR03196 232 GGAFGGKDDLN-I-QIHAALLALASGLP 257 (768)
T ss_pred CCccCCccccc-H-HHHHHHHHHHhCCC
Confidence 99999999753 3 46689999999998
No 18
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=100.00 E-value=5e-52 Score=446.14 Aligned_cols=258 Identities=21% Similarity=0.211 Sum_probs=233.8
Q ss_pred cCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec--ccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHH
Q 002932 246 PISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV--EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 322 (864)
Q Consensus 246 P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l 322 (864)
|+||+||+++|+ ++++++++||||||++ ++.+ ..|+.+|||++|+||++|+.++++|+|||+|||++|+++-
T Consensus 1 P~sl~ea~~ll~-----~~~~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLE-----KAPDSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHH-----hCCCCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 899999999999 4578999999999988 4443 4589999999999999999999999999999999999741
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhh
Q 002932 323 KEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFL 402 (864)
Q Consensus 323 ~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF~ 402 (864)
. ..+.+|.|.++++.|||+||||+||||||||++ . ||++|+|+||||+|+|.+ .|.|+||++|||
T Consensus 76 ~---------i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~--~---sD~~p~Llal~A~v~i~~-~g~r~vp~~~f~ 140 (264)
T TIGR03199 76 L---------IKRALPCFVDAASAIAAPGVRNRATIGGNIASG--I---GDFIPALLVLGAELIVYQ-KELIRLPLGAWL 140 (264)
T ss_pred H---------hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc--c---cchHHHHHHcCCEEEEEe-CCEEEEEHHHhh
Confidence 1 123699999999999999999999999999998 4 899999999999999999 899999999999
Q ss_pred cCCCCCCCceEEEEEc-CCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEc
Q 002932 403 ERPPLDSRSILLSVEI-PCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (864)
Q Consensus 403 ~~~~l~~~Eii~~I~i-P~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~G 481 (864)
.++.|.++|||++|.| |.+.. +..+.+||+++| +++++++||+|+.+++++ +++|+++||+||
T Consensus 141 ~~~~l~~~Eii~~I~i~p~~~~----------~~~~~~~k~~~R-~~~~~a~v~~a~~~~~~~-----~~~i~~~ria~G 204 (264)
T TIGR03199 141 SEEDFKPTAIVTRVIIGPRAET----------GEFVFYHKVGRR-ETFTGSLVVVAGRFLLDG-----SQTIKEIRLAVG 204 (264)
T ss_pred hccCCCCCcEEEEEEEECCCCC----------CCcEEEEEEecc-chhHHHHheeeEEEEEcC-----CCeEEEEEEEee
Confidence 9889999999999999 65533 345667899989 899999999999999863 468999999999
Q ss_pred ccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHH
Q 002932 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLY 540 (864)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~ 540 (864)
|++++ |+|+.++|++|.|++|++++++++.+.+.+++.|.+|. +|++||++|+.+|+.
T Consensus 205 gv~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~~~~ 263 (264)
T TIGR03199 205 GADIT-PRRLLDSEAKLMAPPWDPHLLAELYKTIIQELPFSSDPFATAAYRKKVAANVIV 263 (264)
T ss_pred cCCCc-eeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999 99999999999999999999999999999999999987 599999999999974
No 19
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=3.6e-52 Score=505.41 Aligned_cols=252 Identities=25% Similarity=0.334 Sum_probs=225.0
Q ss_pred CCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCC---C
Q 002932 603 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI---G 679 (864)
Q Consensus 603 ~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~---~ 679 (864)
.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.|+ +
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~-~~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p--~~~~~~~~ 78 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVP--DIPFPTAG 78 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCC-CCCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcC--Cccccccc
Confidence 58999999999999999999999997 7999999999999999999999999999999999999999998 4442 1
Q ss_pred Cc------ccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCC--ccCCCc
Q 002932 680 SK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSF 751 (864)
Q Consensus 680 ~~------~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~ 751 (864)
.. ....++|+|++++|+|+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+...|
T Consensus 79 ~~~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Vey--e~l-p~v~~~~~Al~~~a~~ih~~~~n 155 (759)
T PRK09970 79 HPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY--EEL-PVITDPEAALAEGAPPIHNGRGN 155 (759)
T ss_pred cccCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeE--EeC-CccCCHHHHhCCCCCccCCCCCc
Confidence 00 0113789999999999999999999999999999999999999 888 999999999988763 432234
Q ss_pred cc---cCCCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCE
Q 002932 752 LY---PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 828 (864)
Q Consensus 752 ~~---~~~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV 828 (864)
+. ....||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||
T Consensus 156 i~~~~~~~~Gd~~~a~~~a~~v-ve~~y~~~~~~h~~mEp~~~iA~~~~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~V 234 (759)
T PRK09970 156 LLKQSTMSTGNVQQTIKAADYQ-VQGHYETPIVQHCHMENVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKV 234 (759)
T ss_pred eeeeeeeccCChhHhhccCCEE-EEEEEEECCEeEeccCCceEEEEECCCCCEEEEECCCcHHHHHHHHHHHhCCCHHHE
Confidence 32 35789999999999996 999999999999999999999999876789999999999999999999999999999
Q ss_pred EEEeCCcCCCCCCCCCCChHHHHHHHHHHHHc-CCC
Q 002932 829 RVITRRVGGAFGGKAIKAMPFNIVGATIELLT-VYR 863 (864)
Q Consensus 829 ~V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t-~~~ 863 (864)
||+++++|||||+|.+... ...||++|+++ |||
T Consensus 235 rV~~~~vGGgFG~K~~~~~--~~~aa~la~~~~grP 268 (759)
T PRK09970 235 RVIKPYVGGGFGNKQDVLE--EPLAAFLTSKVGGRP 268 (759)
T ss_pred EEEeCCCCCCcCcccccCH--HHHHHHHHHHhcCCC
Confidence 9999999999999987543 34567788888 898
No 20
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=7.5e-52 Score=500.72 Aligned_cols=247 Identities=25% Similarity=0.350 Sum_probs=223.8
Q ss_pred ccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCcccCCCc
Q 002932 608 ITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSE 687 (864)
Q Consensus 608 ~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~ 687 (864)
++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| . +.+......|+
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p--~-~~g~~~~~~d~ 76 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP--V-PYGVLPIAENE 76 (746)
T ss_pred CcCcchHhhCccccccccCCC-CCCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCC--c-ccCCCCCCCCC
Confidence 479999999999999999998 6999999999999999999999999999999999999999998 3 33322223589
Q ss_pred ccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCC--ccC-CCcc---ccCCCCChh
Q 002932 688 PLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PSFL---YPKPVGDIS 761 (864)
Q Consensus 688 p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~-~~~~---~~~~~Gd~~ 761 (864)
|+|++++|+|+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+. +.|+ ....+||++
T Consensus 77 ~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~ 153 (746)
T TIGR03194 77 YPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEY--EEL-PAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVA 153 (746)
T ss_pred ccCCCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEE--ecC-CCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHh
Confidence 9999999999999999999999999999999999999 888 899999999988874 432 2443 245789999
Q ss_pred hhcccCCEEEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCC
Q 002932 762 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 840 (864)
Q Consensus 762 ~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFG 840 (864)
++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+++++|||||
T Consensus 154 ~a~~~a~~v-ve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG 232 (746)
T TIGR03194 154 AAFAEADLI-REKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFG 232 (746)
T ss_pred HHhccCCEE-EEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCccc
Confidence 999999996 99999999999999999999999985 4689999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCC
Q 002932 841 GKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 841 gK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
+|... ..+++.||++|+++|||
T Consensus 233 ~K~~~-~~~~~~aal~a~~~grP 254 (746)
T TIGR03194 233 ARVEP-LNFEIIAGLLARKAKGT 254 (746)
T ss_pred ccccc-chHHHHHHHHHHHhCCC
Confidence 99875 34568899999999998
No 21
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=9.9e-52 Score=419.44 Aligned_cols=162 Identities=37% Similarity=0.675 Sum_probs=143.9
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g 90 (864)
..+|+|+|||++++++ ++|+++|+++||++++|||+|.||++|.||||||+| ||+++|||++++.+++|
T Consensus 49 ~~~i~~~VNG~~~~~~-v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlV----------dG~~v~SCl~la~~~~G 117 (217)
T PRK11433 49 ISPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLV----------NGRRLNACLTLAVMHQG 117 (217)
T ss_pred CceEEEEECCEEEEEe-cCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEE----------CCEEeeeeeeehhhcCC
Confidence 3679999999999997 899999999999999999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCC----CCCCCCCCHHHHHHHHhCC
Q 002932 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEP----PPGLSKLTISEAEKAIAGN 166 (864)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~----~~~~~~~~~~~i~~~l~gn 166 (864)
++|+|||||+. .+.+||+|+||+++|++|||||||||||++++||++++.. .|.. ....+.||++||+++|+||
T Consensus 118 ~~ItTiEGL~~-~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~-~~~~~~~~~~~~p~pt~~eIrealsGN 195 (217)
T PRK11433 118 AEITTIEGLGS-PDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDG-IPSHVTVDLTAAPELTADEIRERMSGN 195 (217)
T ss_pred CEEEEeCCcCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhcccc-CccccccccccCCCCCHHHHHHHHcCC
Confidence 99999999985 5689999999999999999999999999999999764321 0100 0002345899999999999
Q ss_pred ccccCCChhHHHHHHHhhh
Q 002932 167 LCRCTGYRPIADACKSFAA 185 (864)
Q Consensus 167 lCRCtgy~~i~~a~~~~~~ 185 (864)
|||||||++|++|+++++.
T Consensus 196 lCRCtgY~~Iv~Av~~~a~ 214 (217)
T PRK11433 196 ICRCGAYSNILEAIEDVAG 214 (217)
T ss_pred ccCCCCcHHHHHHHHHHHh
Confidence 9999999999999999874
No 22
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-51 Score=444.28 Aligned_cols=252 Identities=36% Similarity=0.572 Sum_probs=237.9
Q ss_pred cCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCc
Q 002932 602 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 681 (864)
Q Consensus 602 ~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~ 681 (864)
..||.+.++-++..+|+|.|.|++|++.+.|.||+++-.|+++||+|+++|.+++++.|||+.|+|++|+| |.|. ..
T Consensus 17 ~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvP--GenD-is 93 (781)
T COG4631 17 GGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVP--GEND-IS 93 (781)
T ss_pred CcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCC--CCCC-CC
Confidence 46899999999999999999999999989999999999999999999999999999999999999999999 8775 23
Q ss_pred ccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCCccCCCccccCCCCChh
Q 002932 682 TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDIS 761 (864)
Q Consensus 682 ~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~ 761 (864)
+...|+|+|++++|.|+||||.+|+|+|.++|++|+++.+|+| |+| |+++|+.+|+..+.+...+. ..++||.+
T Consensus 94 p~~hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieY--e~l-p~~~di~~a~a~~~~v~~p~---~l~rGD~~ 167 (781)
T COG4631 94 PVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEY--EDL-PPVTDIDEAIAAGRLVTPPL---TLKRGDAA 167 (781)
T ss_pred cccCCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhccc--ccC-CccCCHHHHhhcccccCCch---hhcccchh
Confidence 3478999999999999999999999999999999999999999 999 99999999998886543221 57899999
Q ss_pred hhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCC
Q 002932 762 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841 (864)
Q Consensus 762 ~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GGgFGg 841 (864)
.+|+.|.+. ++++++++.|+|||||.|.++|.|+|||.++||+|||.|..+|..+|++||+|.|.|.|.++||||||||
T Consensus 168 a~~~~Ap~r-~~G~~~iGGQehFYLEgqia~a~p~Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGFGG 246 (781)
T COG4631 168 AALAAAPHR-LQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFGG 246 (781)
T ss_pred hhhhhCchh-heeeEEEcCeeeEEEeeeeeEeccCCCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCcCc
Confidence 999999996 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCC
Q 002932 842 KAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 842 K~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|++.....++.||++|+|++||
T Consensus 247 KEtQ~~~fAa~aA~aA~k~~r~ 268 (781)
T COG4631 247 KETQANQFAALAALAAKKTGRP 268 (781)
T ss_pred ccccchHHHHHHHHHHHHhCCc
Confidence 9999889999999999999998
No 23
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=3.1e-50 Score=488.68 Aligned_cols=244 Identities=23% Similarity=0.266 Sum_probs=212.1
Q ss_pred ccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCcc-cC-CCccc
Q 002932 612 GAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKT-IF-GSEPL 689 (864)
Q Consensus 612 d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~-~~-~~~p~ 689 (864)
|+..+|||+++|++|+. +|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|..... .. .++|+
T Consensus 1 e~~r~vtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~~~~~~~~~~ 77 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVK-LPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLK--PLNLHWMPTLAGDVQAV 77 (770)
T ss_pred CCcccccccccccccCC-CCCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcC--CccCCcCCCCCCCCccc
Confidence 46789999999999998 7999999999999999999999999999999999999999997 33321111 11 23899
Q ss_pred ccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCC--ccC-CC------------cc-c
Q 002932 690 FADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PS------------FL-Y 753 (864)
Q Consensus 690 ~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~-~~------------~~-~ 753 (864)
|++++|+|+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+. ++ |. .
T Consensus 78 la~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~ 154 (770)
T TIGR02416 78 LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIF 154 (770)
T ss_pred CcCCEEEEcCCcEEEEEECCHHHHHHHhccceeee--ecC-CccCCHHHHhcCCCceecCCCCCccccccccccccceee
Confidence 99999999999999999999999999999999999 788 999999999987764 331 11 11 1
Q ss_pred cC---CCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEE
Q 002932 754 PK---PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829 (864)
Q Consensus 754 ~~---~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~ 829 (864)
.. ..||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 155 ~~~~gd~gd~~~af~~a~~v-ve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~Vr 233 (770)
T TIGR02416 155 RWEIGDKAATDAVFAKAEVV-VKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIR 233 (770)
T ss_pred EEecCCccchhHHhccCCEE-EEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEE
Confidence 12 445679999999996 99999999999999999999999985 57899999999999999999999999999999
Q ss_pred EEeCCcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 830 VITRRVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 830 V~~~~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
|+++++|||||+|..... ....||++|+++|||
T Consensus 234 V~~~~vGGgFG~K~~~~~-~~~~aa~~A~~~gRP 266 (770)
T TIGR02416 234 VISPDIGGGFGNKVGIYP-GYVCAIVASIVLGVP 266 (770)
T ss_pred EEcCCCCCCccccccccc-HHHHHHHHHHHhCCC
Confidence 999999999999987533 334588999999998
No 24
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=100.00 E-value=2.5e-49 Score=421.41 Aligned_cols=273 Identities=26% Similarity=0.294 Sum_probs=242.8
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eeec-ccCceeeeCCCCccccceEecCCc-EEecccccHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTG-IEIGATVTIS 316 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~-l~IGA~vTl~ 316 (864)
.|+|++|+|++||+.+++ ..+++++++|||+|.. +|.. ..|..+|||++|+++..+...+++ |+|||+||++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~-----~~~~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA-----RAPDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH-----hCCCcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 479999999999999999 3569999999999987 6665 689999999999988887776555 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 002932 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 396 (864)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~v 396 (864)
+|.++-. ....+|+|.+++..+|++||||+||||||||+++|. +|++|+|+||||+|++.+..|+|++
T Consensus 78 ei~~~~~---------~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~---aD~~~aLlaLdA~v~~~~~~g~r~i 145 (284)
T COG1319 78 EIARHPA---------VRRIPPALSEAASAIASPQVRNRATIGGNLCNADPA---ADLAPALLALDAEVEIRSPGGERTI 145 (284)
T ss_pred HHHhChh---------hhhhchHHHHHHHHhcChhhcceeeecchhccCCCc---hhhHHHHHHcCCEEEEecCCccEEE
Confidence 9998621 123699999999999999999999999999999998 9999999999999999999999999
Q ss_pred ehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCcee
Q 002932 397 MLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473 (864)
Q Consensus 397 pl~dF~~---~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i 473 (864)
|++|||. .|.|+++||||+|.||.++. ..+.+||+.+|+...+++.|++|..++. ++|
T Consensus 146 ~~~~f~~~p~~t~l~~gelit~v~lP~~~~-----------~~~~~~kk~r~r~~~~~~~vsvA~~~~~--------~~v 206 (284)
T COG1319 146 PIEDFFRGPGETALEPGELITAVILPPPPA-----------ARGAYYKKVRRRASFAIALVSVAAKLRG--------DRV 206 (284)
T ss_pred EHHHhhcCccccccCCCcEEEEEEcCCCcc-----------CCccEEEEeecchhhhHHHHHHHhhhcc--------cce
Confidence 9999998 57899999999999999733 2233466555547788888888887754 279
Q ss_pred eeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 002932 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (864)
Q Consensus 474 ~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~r~l~~~~~~ 549 (864)
+++||++||++++ |+|+.++|+.|.|+++++++++.+.+.+.+++.|.+|. +|++||++|+++++.|.+.++..+
T Consensus 207 ~~~RvAlgg~a~~-p~R~~~~E~~L~~~~l~~~~~~~~~~~~~~~~~p~~d~r~s~~yr~~l~~~~~~ral~~a~~~ 282 (284)
T COG1319 207 SEARVALGGVAPK-PWRLEDAEAALLGKPLSLETLEAAAEAAMQEAAPISDVRGSAEYRRKLAKVLLARALAEAQGR 282 (284)
T ss_pred eeeeeeecccCCc-ceehHHHHHHhhCCCCChHHHHHHHHHhhcccCCcccccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999 99999999999999999999999999999999999997 599999999999999999988764
No 25
>PRK09799 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-48 Score=412.84 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=219.6
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHH
Q 002932 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (864)
Q Consensus 242 ~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (864)
+|++|+|++||+++|+++ .++++++||||+|++......++.+|||++| ||++|+.++++|+|||+|||++++++
T Consensus 4 ~y~~P~sl~Ea~~ll~~~----~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRRY----QDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHhC----CCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 799999999999999953 2469999999999773222568899999999 99999999999999999999999886
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhh
Q 002932 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEF 401 (864)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~dF 401 (864)
.. ..+.|.++++.||++||||+||||||||+++|. ||++|+|+||||+|+|.+. |++|++||
T Consensus 79 ~~------------~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~---sD~~p~LlAldA~v~l~~~---r~vpl~~f 140 (258)
T PRK09799 79 RF------------IPAALREALGFVYSRHLRNQSTIGGEIAARQEE---SVLLPVLLALDAELVFGNG---ETLSIEDY 140 (258)
T ss_pred cc------------cHHHHHHHHHHhCCHHHhccchhHHHhhcCCcc---HHHHHHHHHcCCEEEEecC---cEEeHHHh
Confidence 31 124899999999999999999999999999998 9999999999999999884 89999999
Q ss_pred hcCCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEc
Q 002932 402 LERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (864)
Q Consensus 402 ~~~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~G 481 (864)
|.. .++|||++|+||.+.. .+.+||++ | +++|+|+||+|+.++++. ++||+||
T Consensus 141 ~~g---~~~Eil~~I~iP~~~~------------~~~~~K~~-r-~~~~~a~v~~A~~~~~~~----------~~ria~G 193 (258)
T PRK09799 141 LAC---PCDRLLTEIIIPDPYR------------TCATRKIS-R-SQAGLTVVTAAVALTDHD----------GMRIALD 193 (258)
T ss_pred cCC---CCCcEEEEEEcCCCCC------------cceEEEec-c-cccChhhheeEEEEEEcC----------CeEEEEE
Confidence 975 4799999999996532 23467886 7 689999999999998852 3899999
Q ss_pred ccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 002932 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (864)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~r~l~~~~~~ 549 (864)
|++++ |+|++++|+ +.++++++.++ +.+++.|.+|. +|++||++++.+|++|+|.++.+.
T Consensus 194 gv~~~-p~r~~~~E~----~~~~~~~~~~a---~~~~~~p~~d~~~s~~YR~~~~~~l~~r~l~~~~~~ 254 (258)
T PRK09799 194 GVASK-PLRLHDVEK----QNLEGNALEQA---VANAIFPQEDLRGSVAYKRYIAGVLVADLYADCQQA 254 (258)
T ss_pred CCCCc-ccchHHHhc----CCCCHHHHHHH---HHhcCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999998 88999888876 45788999887 599999999999999999997764
No 26
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=100.00 E-value=3.9e-47 Score=405.30 Aligned_cols=251 Identities=21% Similarity=0.275 Sum_probs=218.0
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
.+|++|+|++||+++|+++ .++++++||||||++......++.+|||++| ||++|+.++++|+|||+||+++|++
T Consensus 2 ~~y~~P~sl~Ea~~ll~~~----~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 2 EQFFRPESTIQALELKKRH----TGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred CceECCCCHHHHHHHHHhC----CCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 3699999999999999942 2479999999999774323567899999999 9999999999999999999999987
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhh
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE 400 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vpl~d 400 (864)
+.. ..+.|.++++.||++||||+||||||||+++|. +|++|+|+||||+|+|.+. |+||++|
T Consensus 77 ~~~------------~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~p~---~D~~~~LlaldA~v~l~~~---r~vp~~d 138 (257)
T TIGR03312 77 NEL------------TPAALKEALGFVYSRHIRNQATIGGEIAAFQSE---SLLLPVLLALKATVVLANA---SQMDIED 138 (257)
T ss_pred Ccc------------hHHHHHHHHHHhCCHHHhccccHHHHhhcCCCc---hHHHHHHHHcCCEEEEecC---cEEeHHH
Confidence 521 123799999999999999999999999999999 9999999999999999986 8999999
Q ss_pred hhcCCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEE
Q 002932 401 FLERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480 (864)
Q Consensus 401 F~~~~~l~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~ 480 (864)
||.. .++|||++|+||.+.. .+.++|+ .| +.+|||+|++|+.+++++ ++||+|
T Consensus 139 F~~g---~~~Ell~~V~iP~~~~------------~~~~~k~-~R-~~~~~a~v~~A~~~~~~~----------~~ria~ 191 (257)
T TIGR03312 139 YLAS---EQRELIVEVIIPNPNL------------MCATRNI-SR-SAAGLAVVTAAVAVDQKG----------NMRIAL 191 (257)
T ss_pred hcCC---CCCcEEEEEEcCCCCC------------CceEEEe-cC-cccchhhheeEEEEEecC----------CEEEEE
Confidence 9976 4799999999997532 2345788 67 789999999999988751 489999
Q ss_pred cccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 002932 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (864)
Q Consensus 481 Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~p~~~~-~sa~YRr~la~~L~~r~l~~~~~~ 549 (864)
||++++ |+|+.++|+. .++++.++++ +.+++.|.+|. +|++|||+|+.+|++|++.++.+-
T Consensus 192 ggv~~~-p~r~~~~E~~----~~~~~~~~~~---~~~~~~p~~D~r~sa~YRr~~~~~l~~r~l~~~~~~ 253 (257)
T TIGR03312 192 DGVSPV-PVRLRDVEAQ----DLKGEALEQA---VADAIHPVADLCGSVAYKRYIAGVVVADLLAECQQL 253 (257)
T ss_pred EccCCc-eeehHHHhhC----cCCHHHHHHH---HHhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999995 6777887654 66889999998 599999999999999999988763
No 27
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=100.00 E-value=2.5e-38 Score=318.59 Aligned_cols=165 Identities=34% Similarity=0.463 Sum_probs=141.2
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEe-eec-ccCceeeeCCCCccccceEecCCcEEecccccHHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY-KEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~-k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (864)
.++|++|+|++||+++++ .++++++|||||+++++ +.+ ..++.+|||++|+||++|+.++++|+|||+||+++
T Consensus 2 ~~~~~~P~sl~ea~~ll~-----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh-----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 479999999999999999 46899999999999994 443 57999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEe
Q 002932 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLM 397 (864)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~R~vp 397 (864)
|+++.. ..+.+|.|++++++||++||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|++|
T Consensus 77 l~~~~~---------~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~---sD~~~~Llal~A~v~i~~~~g~r~~~ 144 (171)
T PF00941_consen 77 LEESPL---------IQQYFPALAQAARRIASPQIRNRATIGGNLCNASPA---SDLAPALLALDARVEIASPDGTRTVP 144 (171)
T ss_dssp HHHHHH---------HHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT----SHHHHHHHTT-EEEEEETTEEEEEE
T ss_pred Hhhcch---------hhhhHHHHHHHHHHhCCHhHeeeeeeccccccCccc---ccHHHHHHHhCcEEEEEcCCeeEEEE
Confidence 999721 234699999999999999999999999999999998 99999999999999999999999999
Q ss_pred hhhhhc---CCCCCCCceEEEEEcCCC
Q 002932 398 LEEFLE---RPPLDSRSILLSVEIPCW 421 (864)
Q Consensus 398 l~dF~~---~~~l~~~Eii~~I~iP~~ 421 (864)
++|||. ++.|+++|||++|+||.|
T Consensus 145 ~~~f~~g~~~~~l~~~eli~~I~iP~~ 171 (171)
T PF00941_consen 145 LEDFFTGPRKTDLEPGELITSIRIPKP 171 (171)
T ss_dssp GGGGEECTTEESS-TTEEEEEEEEES-
T ss_pred HHHhcCccccccCCCCcEEEEEECCCC
Confidence 999998 578999999999999975
No 28
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=2.8e-37 Score=372.88 Aligned_cols=254 Identities=28% Similarity=0.401 Sum_probs=221.5
Q ss_pred CcCCCCcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCC
Q 002932 601 YYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGS 680 (864)
Q Consensus 601 ~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~ 680 (864)
...+|+++.|.|+..||||+++|++|+. .+||+|+++||||++|++|++||.++|+++|||++|+|++|+|. ..+..
T Consensus 3 ~~~~gr~~~R~~~~~~vtG~~~y~~d~~-~~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~-~~~~~- 79 (731)
T COG1529 3 AEIIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPA-WSPVR- 79 (731)
T ss_pred cccCCCCcccccchhheeeeeheehhhc-CCCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcc-ccccc-
Confidence 3578999999999999999999999997 78999999999999999999999999999999999999999983 11110
Q ss_pred cccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHhcCCC--ccCCCcc-ccCCC
Q 002932 681 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFL-YPKPV 757 (864)
Q Consensus 681 ~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~-~~~~~ 757 (864)
.......++|+.++|+|+||||++|+|+|+++|.+|+++|.|+| +++ |+++++++++.++.. |+.. |+ .....
T Consensus 80 ~~~~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~y--e~l-~~~v~~~~a~~~~~~~ih~~~-n~~~~~~~ 155 (731)
T COG1529 80 VELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY--EAL-PPVVDPEEALAEDAPVIHDEL-NIARDATF 155 (731)
T ss_pred cccCCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeee--ccC-CCcCCHHHHhcCCCccccccc-cccccccc
Confidence 01111222788999999999999999999999999999999999 888 899999999988764 3311 22 34567
Q ss_pred CChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCC
Q 002932 758 GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGG 837 (864)
Q Consensus 758 Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~~GG 837 (864)
||.+ +|++|+++ ++.+|.++++.|.+|||++++++|+++++|++|++||+|+.++.+++++|++|+++|+|+++++||
T Consensus 156 g~~~-a~a~A~~~-v~~~~~~~~~~~~~~E~~g~~a~~~d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGg 233 (731)
T COG1529 156 GDDD-AFAAAAVV-VEAPYKTPRKDPNPMEPHGVVAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGG 233 (731)
T ss_pred ccch-hhhcCcEE-eeeeeeccCcCccCcccccceeeEcCCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCc
Confidence 7888 99999996 999999999999999999999999933389999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCCCC
Q 002932 838 AFGGKAIKAMPFNIVGATIELLTVYRY 864 (864)
Q Consensus 838 gFGgK~~~~~~~~~~aAlaA~~t~~~~ 864 (864)
|||+|... +.....++++|+++|||+
T Consensus 234 gfG~K~~~-~~~~~~~~~aa~~~grpV 259 (731)
T COG1529 234 GFGSKGVV-YVEEILAALAAVVAGRPV 259 (731)
T ss_pred ccCCcccc-eeHHHHHHHHHHhcCCCe
Confidence 99999875 555667789999999984
No 29
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.97 E-value=4.3e-31 Score=227.00 Aligned_cols=75 Identities=52% Similarity=1.009 Sum_probs=61.7
Q ss_pred EecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 002932 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (864)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~ 174 (864)
|||||++ ++.|||||++|+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||||+
T Consensus 1 TvEGl~~-~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~-----~~~p-------~~~ei~~al~gnlCRCTgY~ 67 (75)
T PF01799_consen 1 TVEGLAS-DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRR-----NPDP-------TEEEIREALSGNLCRCTGYR 67 (75)
T ss_dssp -GGGSSB-TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHH-----SSS--------CHHHHHHHTTTS--SSSTSH
T ss_pred CcCcCCC-CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhc-----ccch-------hhHHHHHHHHcCccCCCCcH
Confidence 8999975 789999999999999999999999999999999965 3666 69999999999999999999
Q ss_pred hHHHHHHH
Q 002932 175 PIADACKS 182 (864)
Q Consensus 175 ~i~~a~~~ 182 (864)
+|++|++.
T Consensus 68 ~I~~Av~~ 75 (75)
T PF01799_consen 68 PIVEAVRQ 75 (75)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 99999973
No 30
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.95 E-value=2.1e-28 Score=228.76 Aligned_cols=107 Identities=43% Similarity=0.643 Sum_probs=89.2
Q ss_pred ccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCCCCCCCCCc-ccCCC--cccccCCc
Q 002932 618 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK-TIFGS--EPLFADEL 694 (864)
Q Consensus 618 tG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~-~~~~~--~p~~a~~~ 694 (864)
||+++|++|++ ++||||+++||||++||+|++||+++|++||||++|+|++|+| +.|.... ....+ +|+|++++
T Consensus 1 TG~a~Y~~Di~-~~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip--~~~~~~~~~~~~~~~~~~la~~~ 77 (111)
T PF01315_consen 1 TGEARYVDDIP-PPGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIP--GINPNGGLPIPHDEPQPVLADDK 77 (111)
T ss_dssp TT-S-BGGGSC-STTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHS--SGSEESCSCSTTSSEEESS-SSE
T ss_pred CcCeEcccccC-CCCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccC--ccccCccccccCCCceEeccCCe
Confidence 89999999998 7899999999999999999999999999999999999999999 4442111 22333 58999999
Q ss_pred eeecCCcEEEEEeCCHHHHHHhcccceEEEecCCC
Q 002932 695 TRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (864)
Q Consensus 695 V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l 729 (864)
|+|+|||||+|||+|+++|++|+++|+|+| |+|
T Consensus 78 V~y~GqpVa~VvAet~~~A~~Aa~~V~V~Y--e~l 110 (111)
T PF01315_consen 78 VRYVGQPVALVVAETREAARDAAELVKVEY--EEL 110 (111)
T ss_dssp ESSTT-EEEEEEESSHHHHHHHHHT-EEEE--EE-
T ss_pred EeECCCeEEEEEECCHHHHHHHhcCcEEEe--EeC
Confidence 999999999999999999999999999999 766
No 31
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=99.86 E-value=6.2e-22 Score=234.36 Aligned_cols=108 Identities=36% Similarity=0.449 Sum_probs=89.7
Q ss_pred cCCCCChhhhcccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeC
Q 002932 754 PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITR 833 (864)
Q Consensus 754 ~~~~Gd~~~a~~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~ 833 (864)
..+.||++++|++|+++ ||++|++|+|+|++|||++|+|+|+++|+|+||++||+|+.+|..||++||||++||||+.+
T Consensus 17 ~~~~GDve~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 17 HIERGDVEAAFAEADHV-VEAEYRTPRQAHAPMEPHGAVAWWDEDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp EEEESSHHHHHHHTSEE-EEEEEEE-BB----SS-SEEEEEEETTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEEEEES
T ss_pred ccccCCHHHHHhhCCEE-EEEEEEECCccccCCCCCeEEEEEccCCCEEEEECCcCHhHHHHHHhhhhcCChhHEEEeee
Confidence 57899999999999996 99999999999999999999999996679999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 002932 834 RVGGAFGGKAIKAMPFNIVGATIELLTVYR 863 (864)
Q Consensus 834 ~~GGgFGgK~~~~~~~~~~aAlaA~~t~~~ 863 (864)
++|||||.|. .....++.||++|+++|||
T Consensus 96 ~~GGgFG~~~-~~~~~~~~aa~~a~~~grP 124 (547)
T PF02738_consen 96 YVGGGFGKKK-QDSPIAVLAALAAKKTGRP 124 (547)
T ss_dssp B-S--TTTTS-STHHHHHHHHHHHHHHSSE
T ss_pred ecCCCCCCcc-ccchHHHHHHHHHhccCce
Confidence 9999999443 3466788999999999998
No 32
>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]. The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....
Probab=99.74 E-value=1.5e-17 Score=153.71 Aligned_cols=101 Identities=27% Similarity=0.390 Sum_probs=93.7
Q ss_pred EEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 002932 439 TYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDS 518 (864)
Q Consensus 439 ~~K~~~R~~~~dia~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e 518 (864)
+||+.+| +++|+|++|+|+.+.+++ +++|+++||++||++++ |+|+.++|++|.|++|++++++++.+.+.++
T Consensus 2 ayk~~~R-~~~d~a~v~~a~~~~~~~-----~~~i~~~ria~g~v~~~-p~r~~~~E~~L~g~~~~~~~~~~~~~~~~~~ 74 (103)
T PF03450_consen 2 AYKIGRR-KANDIAIVNVAVLVSVDD-----DGRIEDARIAVGGVAPT-PVRAEEVEAALIGKPLSEETLEEAAEAVSEE 74 (103)
T ss_dssp EEEESSS-SSSSSSSEEEEEEEEEET-----TSEEEEEEEEEESSSSS-TEE-HHHHHHTTTSBSSHHHHHHHHHHHHHH
T ss_pred CeeccCc-cccHHHHHhhhheEEEec-----CceEEEEEEEEeccccc-eeehHHHHHHHhhcchhhhhHHHHHHHHHhc
Confidence 4599988 899999999999999984 45999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCC-CCHHHHhHHHHHHHHHHHHHH
Q 002932 519 VVPEDGT-SIPAYRSSLAVGFLYEFFGSL 546 (864)
Q Consensus 519 ~~p~~~~-~sa~YRr~la~~L~~r~l~~~ 546 (864)
+.|.+|. +|++||++|+.+|++|+|.++
T Consensus 75 ~~~~~d~r~s~~YR~~l~~~l~~ral~~~ 103 (103)
T PF03450_consen 75 IDPISDMRASAEYRRHLARVLVRRALEEV 103 (103)
T ss_dssp THHCTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999997 599999999999999999874
No 33
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.17 E-value=4.4e-11 Score=127.16 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=64.2
Q ss_pred EEEEEecCCCCCcHHHHHhhccCC-----cccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEE
Q 002932 21 EKFEVSSVDPSTTLLEFLRYHTRF-----KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~~~~l-----~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~T 95 (864)
+.++++ +++++|||++||+ ++. +++|.||++|.||+|+|+| ||++++||++++..++|.+++|
T Consensus 20 q~y~v~-~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~I----------nG~p~laC~t~~~~~~~~~~it 87 (251)
T PRK12386 20 QDYTVE-VNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEI----------NGRPRLMCMTRMSTFDEDETVT 87 (251)
T ss_pred EEEEEe-CCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEE----------CccEeccHHhHHHHhCCCCeEE
Confidence 668887 7999999999998 787 5999999999999999999 8999999999999999999999
Q ss_pred ecCCCC
Q 002932 96 SEGLGN 101 (864)
Q Consensus 96 vEgl~~ 101 (864)
||+|.+
T Consensus 88 iepl~~ 93 (251)
T PRK12386 88 VTPMRT 93 (251)
T ss_pred EccCCC
Confidence 999975
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.68 E-value=2.2e-08 Score=106.24 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=61.0
Q ss_pred EEEEEecCC-CCCcHHHHHhhcc----CCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEE
Q 002932 21 EKFEVSSVD-PSTTLLEFLRYHT----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (864)
Q Consensus 21 ~~~~~~~~~-~~~~Ll~~LR~~~----~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~T 95 (864)
+.++++ ++ +++|||++|++.- +..+.+.||++|.||+|+|.| ||+++.||.+++..+ |.+++|
T Consensus 18 ~~~~v~-~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v----------nG~~~laC~t~~~~~-~~~~~t 85 (232)
T PRK05950 18 QTYEVD-VDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI----------NGKNGLACITPISDL-KKGKIV 85 (232)
T ss_pred EEEEeC-CCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE----------CCcCccchhChHhHc-CCCeEE
Confidence 456665 67 9999999999753 478999999999999999999 799999999999999 678999
Q ss_pred ecCCCC
Q 002932 96 SEGLGN 101 (864)
Q Consensus 96 vEgl~~ 101 (864)
||+|.+
T Consensus 86 iepl~~ 91 (232)
T PRK05950 86 IRPLPG 91 (232)
T ss_pred EEECCC
Confidence 999975
No 35
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.58 E-value=4.5e-08 Score=103.01 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=61.2
Q ss_pred EEEEEecCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~~----~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++++ +++++|||+.|+.. ....+.+.+|+.|.||+|+|.| ||+++.||.+++..+ |++++||
T Consensus 15 ~~~~v~-~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v----------nG~~~laC~t~v~~~-g~~~~~i 82 (220)
T TIGR00384 15 QSYEVP-ADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV----------NGKPVLACKTKVEDL-GQPVMKI 82 (220)
T ss_pred EEEEEe-CCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE----------CCEEhhhhhChHHHc-CCCcEEE
Confidence 567776 78999999999862 2568899999999999999999 799999999999998 8999999
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|+|.+
T Consensus 83 epl~~ 87 (220)
T TIGR00384 83 EPLPN 87 (220)
T ss_pred eeCCC
Confidence 99975
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.49 E-value=1.6e-07 Score=102.00 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=60.1
Q ss_pred EEEEEecCCCCCcHHHHHhh---ccC-CcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc--cCceeE
Q 002932 21 EKFEVSSVDPSTTLLEFLRY---HTR-FKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV--NGCLIT 94 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~---~~~-l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~--~g~~i~ 94 (864)
+.++++ +++++|||++|+. +.. -.+.+.+|++|.||+|+|.| ||+++.||.+++..+ ++.+++
T Consensus 25 ~~~~v~-~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I----------NG~~~laC~t~v~~~~~~~~~~~ 93 (279)
T PRK12576 25 QEYKVK-VDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI----------NGEPRLACKTLVLDVAKKYNSVI 93 (279)
T ss_pred EEEEEe-cCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE----------CCcEeccccCcHHHhhcCCCCcE
Confidence 557776 7999999999987 232 34779999999999999999 799999999999998 367889
Q ss_pred EecCCCC
Q 002932 95 TSEGLGN 101 (864)
Q Consensus 95 TvEgl~~ 101 (864)
|||+|.+
T Consensus 94 tiePl~~ 100 (279)
T PRK12576 94 TIEPMDY 100 (279)
T ss_pred EEEECCC
Confidence 9999975
No 37
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.39 E-value=8.5e-07 Score=82.57 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=55.5
Q ss_pred EEEEEecCCCCCcHHHHHh---hc-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc--eeE
Q 002932 21 EKFEVSSVDPSTTLLEFLR---YH-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC--LIT 94 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR---~~-~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~--~i~ 94 (864)
+.++++ +++.+|+|+.|. ++ -+--..+.+|.+|.||+|.|.| ||+++.+|.+++..+... ..+
T Consensus 19 ~~y~v~-~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~~~~~i 87 (110)
T PF13085_consen 19 QEYEVP-VEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI----------NGRPRLACKTQVDDLIEKFGNVI 87 (110)
T ss_dssp EEEEEE-GGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE----------TTEEEEGGGSBGGGCTTSETBEE
T ss_pred EEEEec-CCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE----------CCceecceeeEchhccCCCcceE
Confidence 356776 679999999884 33 3556788999999999999999 899999999999999866 479
Q ss_pred EecCCCC
Q 002932 95 TSEGLGN 101 (864)
Q Consensus 95 TvEgl~~ 101 (864)
|||-|.+
T Consensus 88 ~IePL~~ 94 (110)
T PF13085_consen 88 TIEPLPN 94 (110)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999975
No 38
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.19 E-value=1.2e-06 Score=93.43 Aligned_cols=68 Identities=28% Similarity=0.511 Sum_probs=56.8
Q ss_pred EEEEEecCCCCCcHHHHH---hhccCCc-ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDPSTTLLEFL---RYHTRFK-SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~L---R~~~~l~-g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++++ +++++|||+.| ++++..+ +.+.+|.+|.||+|+|.| ||+++.+|.+++..+.+. +||
T Consensus 25 ~~~~v~-~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I----------nG~~~laC~t~~~~~~~~--~~i 91 (244)
T PRK12385 25 QTYEVP-YDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV----------NNVPKLACKTFLRDYTGG--MKV 91 (244)
T ss_pred EEEEee-CCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE----------CccChhhHhhHHHHcCCC--eEE
Confidence 556776 68999999999 4455454 788999999999999999 799999999999987533 789
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|-|.+
T Consensus 92 ePl~~ 96 (244)
T PRK12385 92 EALAN 96 (244)
T ss_pred eeCCC
Confidence 99964
No 39
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.09 E-value=1e-05 Score=71.75 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=47.9
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhc-cCCc---cc----ccCCCCCCCCccEEEEeecCCCcccCCcee-ecccc
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYH-TRFK---SV----KLGCGEGGCGACVVLLSKYNPELDQLEDFT-ISSCL 82 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~-~~l~---g~----K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~-v~sCl 82 (864)
..|+|+|||+++++. ++.||++.|+.. ..+. .- ..-|..|.|+.|.|.+ +++. +.||.
T Consensus 2 ~~v~i~idG~~v~~~---~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev----------~g~~~v~AC~ 68 (82)
T PF13510_consen 2 KMVTITIDGKPVEVP---PGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEV----------DGEPNVRACS 68 (82)
T ss_dssp EEEEEEETTEEEEEE---ET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEE----------SSEEEEETTT
T ss_pred CEEEEEECCEEEEEc---CCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEE----------CCCcceEccc
Confidence 579999999999875 699999999863 2222 22 3447789999999999 5666 99999
Q ss_pred cchhhccCceeEEe
Q 002932 83 TLLCSVNGCLITTS 96 (864)
Q Consensus 83 ~p~~~~~g~~i~Tv 96 (864)
+++. +|+.|.|-
T Consensus 69 t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 69 TPVE--DGMVVETQ 80 (82)
T ss_dssp -B----TTEEEE--
T ss_pred CCCc--CCcEEEEe
Confidence 9964 68888873
No 40
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.97 E-value=9.5e-06 Score=71.65 Aligned_cols=69 Identities=28% Similarity=0.462 Sum_probs=53.0
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCC--------cccCCceeecccccch
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPE--------LDQLEDFTISSCLTLL 85 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~~~~~~--------~~~~~~~~v~sCl~p~ 85 (864)
|+|+.||...+++ ++++++|+++|++ .|+. ...+|+.|.||+|.|.|.+-+.. ....+...+.+|.+.+
T Consensus 1 v~~~~~~~~~~~~-~~~g~~ll~al~~-~g~~-~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 1 VTINVPGSGVEVE-VPEGETLLDAARE-AGID-IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred CEEecCCCCEEEE-ECCCCcHHHHHHH-cCCC-cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCee
Confidence 5788988778887 7899999999998 5877 99999999999999999642211 0112355678888876
No 41
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=97.96 E-value=3.7e-07 Score=111.85 Aligned_cols=223 Identities=14% Similarity=0.078 Sum_probs=134.7
Q ss_pred cccCcCCcCCC-CcccccccccccccceeccccCCCCCCceEEEEEecCCcCceeccCCCCcCCCCCCEEEEEEcCCCCC
Q 002932 595 VQLSREYYPVG-EPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPE 673 (864)
Q Consensus 595 ~~~~~~~~~vG-~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~ivrSp~a~a~I~~ID~s~A~~~pGVv~vvt~~Dip~ 673 (864)
.+.+..+.++| ...++ |+. ++|+.+.|..|.. .++||+..|..++..-.+|+. |..-+...++++.+.-
T Consensus 176 ~~~~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~-~~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~------ 245 (731)
T COG1529 176 RKDPNPMEPHGVVAVPD-DGD-KLTVWASTQIPHR-LRGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEE------ 245 (731)
T ss_pred CcCccCcccccceeeEc-CCC-eEEEEEccCCchH-HHHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHH------
Confidence 45577888999 67788 777 9999999999997 789999998855544444444 7777766666533221
Q ss_pred CCCCCCCcccCCCcccccCCceeecCCcEEEEEeCCHHHHHHhcccceEEEecCCCCCccCCHHHHHh-cCCCccCCCcc
Q 002932 674 GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVD-RSSLFEVPSFL 752 (864)
Q Consensus 674 ~g~n~~~~~~~~~~p~~a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~-~~~~~~~~~~~ 752 (864)
+.+-.-..-.|-||.++-..++.. +.. +.-.+...+++-+.+ ++.+......
T Consensus 246 ---------------~~~~~aa~~~grpVk~~~tR~e~~---------~~~--~~~~~~~~~~~~~a~~dg~l~~~~~~- 298 (731)
T COG1529 246 ---------------ILAALAAVVAGRPVKWIETREELF---------VAT--GHRRATLIDVKLGADKDGRLLAIKGT- 298 (731)
T ss_pred ---------------HHHHHHHHhcCCCeEEecchHHhh---------hcc--CCCCCceEEeeeecCcCCcEEeeeee-
Confidence 111111122233444333332222 211 100011111111111 1111000000
Q ss_pred ccCCCCC-----hhhhc---ccCCEEEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC
Q 002932 753 YPKPVGD-----ISKGM---NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIP 824 (864)
Q Consensus 753 ~~~~~Gd-----~~~a~---~~a~~vvve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~r~~vA~~Lglp 824 (864)
.....|+ +...+ ....+. ++..|..++..|..||| ++.....++. .+||.+...++.+|+.|||+
T Consensus 299 ~~~~~Gay~~~~~~~~~~~~~~g~Y~-i~~~~~~~~~v~tn~~p-~~~~Rg~g~~-----~~~~a~E~~~d~lA~~Lgid 371 (731)
T COG1529 299 VAADTGAYNGPTVPAAAAGLARGPYK-IEAVYIEPYLVHTNMPP-NGAYRGAGRP-----EGTFALERAVDELAEELGID 371 (731)
T ss_pred EEecCCCccccchhHHHHHhcCCcee-cccceeeeEEEEcCCCC-CcccccCCCc-----hhHHHHHHHHHHHHHHhCCC
Confidence 0112222 22222 233455 89999999999999999 6666655432 78999999999999999999
Q ss_pred CCCEEEEeCCcCCCCC-CCCCCChHHHHHHHHHHHHcC
Q 002932 825 EHNVRVITRRVGGAFG-GKAIKAMPFNIVGATIELLTV 861 (864)
Q Consensus 825 ~~kV~V~~~~~GGgFG-gK~~~~~~~~~~aAlaA~~t~ 861 (864)
+.+||++....+|+|| ++...+......+..++++++
T Consensus 372 p~eiR~~n~~~~g~~~~~~~~~~~~~~~~~~~~ak~~~ 409 (731)
T COG1529 372 PVEIRLRNLIRGGPFGLGRRYDSGDYLEELDEAAKRFG 409 (731)
T ss_pred HHHHhhhhccccCCCCCcccccCccHHHHHHHHHHhcC
Confidence 9999999999999999 554333334445667777766
No 42
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.92 E-value=1.5e-05 Score=97.94 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=77.3
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccc----cCCC-CCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK----LGCG-EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K----~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~ 87 (864)
+|+|+|||+++++ .+++|+|+.+|.. |+.-.. .+|. .|.|+.|.|.| +|+.+.||.+|+.
T Consensus 1 mv~i~IdG~~v~~---~~G~til~aa~~~-gi~iP~lC~~~~~~~~G~Cr~C~VeV----------~G~~~~AC~t~v~- 65 (819)
T PRK08493 1 MITITINGKECEA---QEGEYILNVARRN-GIFIPAICYLSGCSPTLACRLCMVEA----------DGKRVYSCNTKAK- 65 (819)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCccccccccCCCCCCccccceEEEE----------CCEEeccccCCCC-
Confidence 3899999999886 4799999999974 665532 4666 69999999999 6788999999984
Q ss_pred ccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 002932 88 VNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (864)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (864)
+|+.|.|-..-- ...-+.+++.+...|-.+|+.|..+
T Consensus 66 -dGM~V~T~s~~v--~~~Rk~vle~ll~~HpldC~~Cd~~ 102 (819)
T PRK08493 66 -EGMNILTNTPNL--MDERNAIMQTYDVNHPLECGVCDKS 102 (819)
T ss_pred -CCCEEEecCHHH--HHHHHHHHHHHHhccCCCCCcCCCC
Confidence 999999942211 1234668899999999999999865
No 43
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.86 E-value=0.00014 Score=81.10 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=55.6
Q ss_pred EEEEEecCCCCCcHHHHHhhc-cCCcc---cccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh-cc------
Q 002932 21 EKFEVSSVDPSTTLLEFLRYH-TRFKS---VKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS-VN------ 89 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~~-~~l~g---~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~-~~------ 89 (864)
+.++++ +++++|+|+.|+.. ..+.+ ...+|..|.||+|.|.| ||+++.||.+++.. ++
T Consensus 19 ~~~~v~-~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i----------nG~~~laC~t~v~~~~~~~~~~~ 87 (329)
T PRK12577 19 QTYTLE-VEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI----------NGRSALACKENVGSELARLSDSN 87 (329)
T ss_pred EEEEEE-CCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE----------CCeeecCcccchhhhhccccccc
Confidence 457776 78999999999863 12222 67789999999999999 79999999999876 22
Q ss_pred --CceeEEecCCCC
Q 002932 90 --GCLITTSEGLGN 101 (864)
Q Consensus 90 --g~~i~TvEgl~~ 101 (864)
+...+|||-|++
T Consensus 88 ~~~~~~i~iePl~~ 101 (329)
T PRK12577 88 SGAIPEITIAPLGN 101 (329)
T ss_pred cCCCCeEEEEECCC
Confidence 235789999986
No 44
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.82 E-value=2e-05 Score=83.84 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=57.4
Q ss_pred EEEEEecCCCCCcHHHHHhh---c-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDPSTTLLEFLRY---H-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~---~-~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++|+ +++++|+|+.|.. + -+--+.+.+|.+|.||+|.|.| ||++..+|.+.+..+.+. .+||
T Consensus 24 ~~y~v~-~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~-~i~i 91 (239)
T PRK13552 24 VTYQLE-ETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI----------NGRPTLACRTLTSDYPDG-VITL 91 (239)
T ss_pred EEEEec-CCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE----------CCeEhhhhhccHhhcCCC-cEEE
Confidence 457887 7899999999964 2 2446679999999999999999 899999999999887522 5899
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|-|.+
T Consensus 92 ePl~~ 96 (239)
T PRK13552 92 MPLPV 96 (239)
T ss_pred EECCC
Confidence 99975
No 45
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.82 E-value=3.2e-05 Score=82.79 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=55.9
Q ss_pred EEEEEecCCCCCcHHHHHhhc-----------cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhcc
Q 002932 21 EKFEVSSVDPSTTLLEFLRYH-----------TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~~-----------~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~ 89 (864)
+.++|+ +++++|+|+.|..- ..--+.+.+|.+|.||+|.|.| ||++..+|.+.+-.+.
T Consensus 23 q~y~v~-~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~ 91 (249)
T PRK08640 23 EEFEIP-YRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI----------NGKPRQACTALIDQLE 91 (249)
T ss_pred EEEEec-CCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE----------CCccchhhhChHHHcC
Confidence 557887 68999999998632 1225678999999999999999 8999999999998873
Q ss_pred CceeEEecCCCC
Q 002932 90 GCLITTSEGLGN 101 (864)
Q Consensus 90 g~~i~TvEgl~~ 101 (864)
..+|||-|.+
T Consensus 92 --~~i~iePl~~ 101 (249)
T PRK08640 92 --QPIRLEPMST 101 (249)
T ss_pred --CcEEEEECCC
Confidence 3589999975
No 46
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.71 E-value=3.4e-05 Score=82.58 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=57.2
Q ss_pred EEEEEecCCCCCcHHHHHhh---cc-----CCcccccCCCCCCCCccEEEEeecCCCcccCCcee------ecccccchh
Q 002932 21 EKFEVSSVDPSTTLLEFLRY---HT-----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFT------ISSCLTLLC 86 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~---~~-----~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~------v~sCl~p~~ 86 (864)
+.++|+.+++++|+|+.|.. ++ .--+.+.+|.+|.||+|.|+| ||++ ..+|.+.+.
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I----------NG~p~~~~~~~LAC~t~~~ 89 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI----------NGRPHGPDRGTTTCQLHMR 89 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE----------CCccCCCCcccchhhhhhh
Confidence 55777645799999999953 11 236889999999999999999 8999 899999988
Q ss_pred hccCceeEEecCCC
Q 002932 87 SVNGCLITTSEGLG 100 (864)
Q Consensus 87 ~~~g~~i~TvEgl~ 100 (864)
.+.+...+|||-|.
T Consensus 90 ~~~~~~~i~iePl~ 103 (250)
T PRK07570 90 SFKDGDTITIEPWR 103 (250)
T ss_pred hcCCCCeEEEEECC
Confidence 88655678999995
No 47
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.70 E-value=4.9e-05 Score=66.36 Aligned_cols=47 Identities=36% Similarity=0.696 Sum_probs=41.5
Q ss_pred EEECCEEEEEecCCCCCc-HHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 002932 16 FAVNGEKFEVSSVDPSTT-LLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (864)
Q Consensus 16 ~~lNg~~~~~~~~~~~~~-Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~ 64 (864)
+++||+.++++ +.++.+ |+++|++ .+-.++..+|+.|.||.|.|.|.
T Consensus 1 i~i~g~~~~~~-~~~~~~~ll~~~~~-~~gi~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 1 ITINGKGVTVE-VPPGETLLLDALER-AGGIGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EETTTEEEEEE-EETTSBBHHHHHHH-TTTTTSTTSSSSSSSSTTEEEEE
T ss_pred CEECCeEEEEE-eCCCccHHHHHHHH-cCCCCcccCCCCCccCCcEEEEe
Confidence 57899999998 678888 9999997 35788999999999999999985
No 48
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.68 E-value=5.5e-05 Score=79.45 Aligned_cols=69 Identities=30% Similarity=0.509 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCcHHHHHhh----ccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDPSTTLLEFLRY----HTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~----~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++|+ .++++|+||.|.. .-.--..+..|.+|.||+|.+.| ||++..||.+.+..+... ++||
T Consensus 20 ~~yev~-~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I----------NG~prLAC~t~~~~~~~~-~i~i 87 (234)
T COG0479 20 QTYEVP-YDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI----------NGKPRLACKTLMKDLEEG-VITI 87 (234)
T ss_pred EEEEec-CCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE----------CCccccchhchhhhccCC-ceEE
Confidence 357776 6799999998842 33556789999999999999999 899999999999998766 9999
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|-|.+
T Consensus 88 ePL~~ 92 (234)
T COG0479 88 EPLPN 92 (234)
T ss_pred EECCC
Confidence 99975
No 49
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.60 E-value=8e-05 Score=79.03 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=54.4
Q ss_pred EEEEEecCCC-CCcHHHHHhh---ccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDP-STTLLEFLRY---HTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~-~~~Ll~~LR~---~~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++|+ +++ ++|+||.|.. +-+--+.+.+|.+|.||+|.|+| ||++..+|.+.+-.+.+ -+||
T Consensus 23 ~~y~v~-~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i----------NG~~~LaC~t~~~~~~~--~i~i 89 (235)
T PRK12575 23 QRYEIA-PRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI----------NGRNGLACLTNMQALPR--EIVL 89 (235)
T ss_pred EEEEec-CCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE----------CCeEcchhhCcHhHcCC--CEEE
Confidence 456676 444 6899998864 23445678999999999999999 89999999999998843 3799
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|-|.+
T Consensus 90 ePl~~ 94 (235)
T PRK12575 90 RPLPG 94 (235)
T ss_pred eECCC
Confidence 99964
No 50
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.57 E-value=0.00012 Score=89.33 Aligned_cols=92 Identities=23% Similarity=0.470 Sum_probs=65.1
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCC------CCCCCCccEEEEeecCCCcccCCceeecccccchh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC------GEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC------~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~ 86 (864)
+|+|+|||+++++ .+++||++.|+.. |+.-. ..| ..|.|+.|.|.++ + ..+.+.||++++
T Consensus 3 ~v~~~idg~~~~~---~~g~ti~~a~~~~-g~~ip-~~c~~~~~~~~g~C~~C~V~v~------g--~~~~~~aC~t~~- 68 (652)
T PRK12814 3 TISLTINGRSVTA---APGTSILEAAASA-GITIP-TLCFHQELEATGSCWMCIVEIK------G--KNRFVPACSTAV- 68 (652)
T ss_pred eEEEEECCEEEEe---CCcCcHHHHHHHc-CCccc-cccCCCCCCCccccceeEEEEC------C--CcceecCcCCCC-
Confidence 6899999998886 4799999999874 65433 344 4799999999992 1 123589999998
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCC-CCCCC
Q 002932 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ-CGFCT 125 (864)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~q-CG~Ct 125 (864)
-+|+.|.| . ...+..+|+...+.-.++ |++|.
T Consensus 69 -~~Gm~v~t----~--~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 69 -SEGMVIET----E--NAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred -CCCCEEEe----C--cHHHHHHHHHHHHHHHhhcccccC
Confidence 48999999 2 335666664333322222 77775
No 51
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.49 E-value=0.00011 Score=79.56 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=53.9
Q ss_pred EEEEecCCC-CCcHHHHHhh---c-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 22 KFEVSSVDP-STTLLEFLRY---H-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 22 ~~~~~~~~~-~~~Ll~~LR~---~-~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
.++|+ +.+ ++|+||.|.. + -.--+.+.+|.+|.||+|.|.| ||++..+|.+.+..+.+ ..+||
T Consensus 63 ~y~v~-~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~~-~~i~i 130 (276)
T PLN00129 63 SYKVD-LNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI----------DGKNTLACLTKIDRDES-GPTTI 130 (276)
T ss_pred EEEeC-CCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE----------CCcccccccccHhhcCC-CcEEE
Confidence 45665 454 7999998864 2 2335689999999999999999 89999999999988743 34679
Q ss_pred cCCCC
Q 002932 97 EGLGN 101 (864)
Q Consensus 97 Egl~~ 101 (864)
|-|.+
T Consensus 131 ePl~~ 135 (276)
T PLN00129 131 TPLPH 135 (276)
T ss_pred EECCC
Confidence 99975
No 52
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.48 E-value=0.0003 Score=74.83 Aligned_cols=96 Identities=17% Similarity=0.311 Sum_probs=69.4
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~-----g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~ 87 (864)
+|+|+|||+.+++ .+++|||+.++.. |+. ..+.-|..|.||.|.|.|. + ..+.+.||.+++.
T Consensus 3 ~v~i~idg~~~~~---~~g~til~a~~~~-gi~ip~~C~~~~~~~~G~C~~C~V~v~---g-----~~~~~~aC~t~v~- 69 (234)
T PRK07569 3 VKTLTIDDQLVSA---REGETLLEAAREA-GIPIPTLCHLDGLSDVGACRLCLVEIE---G-----SNKLLPACVTPVA- 69 (234)
T ss_pred eEEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcCcCCCCCCCCCccCCcEEEEC---C-----CCccccCcCCCCC-
Confidence 5899999999765 5799999999864 433 2233344999999999992 1 1245779999976
Q ss_pred ccCceeEEecCCCCCCCCcch----HhHHHHhcCCCCCCCCChHH
Q 002932 88 VNGCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTPGM 128 (864)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h~----iq~a~~~~~~~qCG~CtPG~ 128 (864)
+|..|.|= ...+.. +-+.+...|-.-|.-|..+-
T Consensus 70 -~Gm~v~t~------~~~~~~~rk~~l~~ll~~h~~~C~~C~~~g 107 (234)
T PRK07569 70 -EGMVVQTN------TPRLQEYRRMIVELLFAEGNHVCAVCVANG 107 (234)
T ss_pred -CCCEEEEC------CHHHHHHHHHHHHHHHHhccccCcccCCCC
Confidence 79999982 122222 55666788999999998654
No 53
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.25 E-value=0.0019 Score=76.25 Aligned_cols=64 Identities=28% Similarity=0.592 Sum_probs=49.9
Q ss_pred EEEEEecCCCCCcHHHHHhhccCCc----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 002932 21 EKFEVSSVDPSTTLLEFLRYHTRFK----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (864)
Q Consensus 21 ~~~~~~~~~~~~~Ll~~LR~~~~l~----g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~~~g~~i~Tv 96 (864)
+.++++ +++++|||+.|++..+.+ ..+.+|..|.||+|+|.+ +|+++.+|.+++. +|..|.+.
T Consensus 21 ~~~~v~-~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v----------~G~~~laC~~~~~--~~~~i~~~ 87 (486)
T PRK06259 21 ESYEVP-VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI----------NGEPVLACKTEVE--DGMIIEPL 87 (486)
T ss_pred EEEEEe-CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE----------CCeEecccccCCC--CCCEEEec
Confidence 356665 789999999999643322 237899999999999998 6889999999875 46666666
Q ss_pred c
Q 002932 97 E 97 (864)
Q Consensus 97 E 97 (864)
.
T Consensus 88 ~ 88 (486)
T PRK06259 88 D 88 (486)
T ss_pred C
Confidence 4
No 54
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.85 E-value=0.0088 Score=65.84 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=87.4
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEeccc
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (864)
++.+++ ..-|+.|+|.+|+.++++-.. +.-...++.|||-+.+-.. .....+|.+++ |+.|+.+++.|++||+
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~--~~~p~~vlG~GSNlLv~d~-g~~gvVI~l~~---~~~i~i~~~~v~v~AG 100 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLK--EGIEVKILGNGTNVLPKDE-PMDFVVVSTER---LDDIFVDNDKIICESG 100 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHh--cCCCEEEEcCCeeEEEecC-CccEEEEEeCC---cCceEEeCCEEEEeCC
Confidence 345556 557899999999999886331 1235788999998866443 23467888755 5666667789999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe
Q 002932 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (864)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g 392 (864)
+++.+|...+.+. .+.. ++.+++. =|||||++++-..+ |-.++.=.+. +|++.+.+.
T Consensus 101 ~~l~~L~~~~~~~----------GL~G----lE~l~gI----PGTVGGAv~mNAGa-yG~ei~d~l~----~V~~~d~g~ 157 (297)
T PRK14653 101 LSLKKLCLVAAKN----------GLSG----FENAYGI----PGSVGGAVYMNAGA-YGWETAENIV----EVVAYDGKK 157 (297)
T ss_pred CcHHHHHHHHHHC----------CCcc----hhhhcCC----chhHHHHHHHhCcc-CchhhheeEE----EEEEECCCE
Confidence 9999999986543 1111 2223333 47899998765542 2233333333 566655322
Q ss_pred eEEEehhh
Q 002932 393 CEKLMLEE 400 (864)
Q Consensus 393 ~R~vpl~d 400 (864)
.+++.-+|
T Consensus 158 v~~~~~~e 165 (297)
T PRK14653 158 IIRLGKNE 165 (297)
T ss_pred EEEEchhh
Confidence 45555554
No 55
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=96.74 E-value=0.0025 Score=61.82 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=73.8
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHH
Q 002932 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (864)
Q Consensus 242 ~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (864)
.+++|+|.+|+.++++.... ..-..++.+||+.+.-... .....+||++++.....+..++..++++|++++.+|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 47899999999998874321 2356788899988852111 356789999986664455556889999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhc-cccccCCcccCCccccccC
Q 002932 322 LKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~ia-s~qIRN~aTiGGNI~~asp 367 (864)
+...- ..+. .+.--.-+|+||.+++..-
T Consensus 81 l~~~g------------------~~~~~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 81 LAPRG------------------LMLPVEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHHT------------------EEESSGGGSTTTSBHHHHHHTT-E
T ss_pred ccccc------------------ccccccccccccceEchhhcCCCc
Confidence 75321 1111 1333456799999988654
No 56
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.58 E-value=0.011 Score=65.26 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=97.3
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccc
Q 002932 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (864)
Q Consensus 235 ~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (864)
+.+.+ ...++.|+|.+|+.++++.... ..-...++.|||.+.+ ........+||+++ .|+.|+.+++.+++||++
T Consensus 25 ~~igg~a~~vv~P~s~edv~~~v~~a~~-~~~p~~v~GgGsnll~-~d~g~~gvvI~l~~--~l~~i~~~~~~v~v~aG~ 100 (298)
T PRK13905 25 FRVGGPADYLVEPADIEDLQEFLKLLKE-NNIPVTVLGNGSNLLV-RDGGIRGVVIRLGK--GLNEIEVEGNRITAGAGA 100 (298)
T ss_pred eecCceEeEEEeCCCHHHHHHHHHHHHH-cCCCEEEEeCCceEEe-cCCCcceEEEEecC--CcceEEecCCEEEEECCC
Confidence 44444 4567999999999998863311 1346888999998754 22123468899874 467777778899999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC-CCCCCchHHHHHhcCcEEEEEeCCe
Q 002932 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQK 392 (864)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp-~~f~sD~~p~LlaldA~v~l~s~~g 392 (864)
++.+|.+.+.+. .+. -+...++. -+||||.+++-.. .+ .++.-.+ -.|++...+|
T Consensus 101 ~~~~L~~~l~~~----------Gl~----gle~~~gi----pGTVGGai~~NaG~~G--~~~~d~v----~~v~vv~~~G 156 (298)
T PRK13905 101 PLIKLARFAAEA----------GLS----GLEFAAGI----PGTVGGAVFMNAGAYG--GETADVL----ESVEVLDRDG 156 (298)
T ss_pred cHHHHHHHHHHc----------CCC----cchhccCC----CcchhHHHHHcCCcCc--eEhheeE----EEEEEEeCCC
Confidence 999999987643 110 12222332 3689998875332 21 1111111 1344455555
Q ss_pred -eEEEehhh-hhc-C-CCCC-CCceEEEEEcCCCC
Q 002932 393 -CEKLMLEE-FLE-R-PPLD-SRSILLSVEIPCWD 422 (864)
Q Consensus 393 -~R~vpl~d-F~~-~-~~l~-~~Eii~~I~iP~~~ 422 (864)
.++++-+| ||. + ..+. ...||+++.+...+
T Consensus 157 ~~~~~~~~e~~~~yR~s~~~~~~gII~~~~l~l~~ 191 (298)
T PRK13905 157 EIKTLSNEELGFGYRHSALQEEGLIVLSATFQLEP 191 (298)
T ss_pred CEEEEEHHHcCCcCccccCCCCCEEEEEEEEEEcC
Confidence 56676666 443 2 2333 24588888776554
No 57
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=96.53 E-value=0.0049 Score=54.89 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=38.2
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.|+|.-+|+.+.+. +.+.|||+.|++. |+ ....+|+.|.||+|.+.+
T Consensus 3 ~v~~~~~~~~~~~~--~~~~tlL~a~~~~-gi-~~p~~Cr~G~Cg~C~~~~ 49 (84)
T PRK10713 3 RVTLRITGTQLLCQ--DEHPSLLAALESH-NV-AVEYQCREGYCGSCRTRL 49 (84)
T ss_pred EEEEEeCCcEEEec--CCCCcHHHHHHHc-CC-CCCCCCCCeECCCCEeEE
Confidence 46777777776653 3569999999875 76 688999999999999998
No 58
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=96.32 E-value=0.0078 Score=55.10 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=38.1
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 13 ~i~~-~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.|+| +-+|...+++ ++++.+||+.|++. |+ ....+|+.|.||.|.|-|
T Consensus 4 ~v~~~~~~~~~~~~~-~~~g~tLLda~~~~-Gi-~i~~~C~~G~Cg~C~v~v 52 (97)
T TIGR02008 4 KVTLVNPDGGEETIE-CPDDQYILDAAEEA-GI-DLPYSCRAGACSTCAGKV 52 (97)
T ss_pred EEEEEECCCCEEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCceEE
Confidence 3444 2377566666 67999999999865 76 478899999999999999
No 59
>CHL00134 petF ferredoxin; Validated
Probab=96.32 E-value=0.0091 Score=54.92 Aligned_cols=48 Identities=15% Similarity=0.380 Sum_probs=39.7
Q ss_pred EEEEEE--CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 13 SVVFAV--NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 13 ~i~~~l--Ng~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.|+|.. +|..+.++ ++++++||+.|++. |+ ....+|+.|.||.|.|-+
T Consensus 5 ~v~~~~~~~~~~~~~~-~~~~~tLL~a~~~~-Gi-~i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 5 KVTLLSEEEGIDVTID-CPDDVYILDAAEEQ-GI-DLPYSCRAGACSTCAGKV 54 (99)
T ss_pred EEEEEecCCCCeEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEEEE
Confidence 444444 77777776 68999999999875 75 788899999999999999
No 60
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=96.26 E-value=0.0054 Score=76.58 Aligned_cols=103 Identities=20% Similarity=0.314 Sum_probs=75.0
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~----~~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~ 87 (864)
.+|+|+|||+++++ .+++||++..+.. -.|...+..+..|.|.-|.|.|.. ..+.+.||.+|+.
T Consensus 3 ~~v~~~idg~~~~~---~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g--------~~~~~~aC~t~v~- 70 (797)
T PRK07860 3 DLVTLTIDGVEVSV---PKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEG--------QRKPQASCTTTVT- 70 (797)
T ss_pred ceEEEEECCEEEEe---CCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECC--------CcccccccCCCCC-
Confidence 36899999999886 4799999999752 234555556678999999999921 1246889999976
Q ss_pred ccCceeEEe---cCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHH
Q 002932 88 VNGCLITTS---EGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCM 130 (864)
Q Consensus 88 ~~g~~i~Tv---Egl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm 130 (864)
+|+.|.|- |=+. ..-.-+-+.+...|-..|..|.-+-=+
T Consensus 71 -~gm~V~t~~~s~~v~---~~r~~~le~ll~~hp~dC~~C~~~g~C 112 (797)
T PRK07860 71 -DGMVVKTQLTSPVAD---KAQHGVMELLLINHPLDCPVCDKGGEC 112 (797)
T ss_pred -CCcEEEeCCCCHHHH---HHHHHHHHHHHhcCCCCCCCCCCCCCc
Confidence 79999983 2221 112346667778899999999876433
No 61
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=96.13 E-value=0.011 Score=68.76 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=78.1
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
..+..|.|.+|+.++++.... ..-...+.+|||++.--..-. ..++||++++..+..|..++..+++.|++++.+|.+
T Consensus 33 ~~v~~p~s~~eV~~iv~~a~~-~~~~v~prG~gts~~g~~~~~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~ 110 (459)
T COG0277 33 LAVVFPKSEEEVAAILRLANE-NGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEK 110 (459)
T ss_pred CEEEccCCHHHHHHHHHHHHH-cCCeEEEECCCCCccccccCC-CcEEEEchhhcchhccCcCCCEEEEcCCccHHHHHH
Confidence 468899999999998874311 122367889999985421101 278999999666655666789999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.++..--. .-..|+.++.+||||||++.+.
T Consensus 111 ~l~~~G~~-----------------~p~~p~s~~~~tIGG~ia~~~~ 140 (459)
T COG0277 111 ALAPHGLF-----------------LPVDPSSSGTATIGGNIATNAG 140 (459)
T ss_pred HHHHcCCc-----------------cCCCccccccceEccchhcCCC
Confidence 87643111 1136677799999999998875
No 62
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.09 E-value=0.055 Score=59.61 Aligned_cols=162 Identities=12% Similarity=0.172 Sum_probs=93.3
Q ss_pred cceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecc
Q 002932 233 SAMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGA 311 (864)
Q Consensus 233 ~~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA 311 (864)
.++.+++ ...|+.|.|.+|+.++++.... ..-...++.||+-+.+-..+.....+|.+.+ ++.|+..++.|++||
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~-~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~---~~~i~~~~~~v~a~A 100 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIE-EKIKIFILGGGSNILINDEEEIDFPIIYTGH---LNKIEIHDNQIVAEC 100 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEECCCccceEEEEECC---cCcEEEeCCEEEEEe
Confidence 3455666 5678899999999998864321 1335778888888866444224456676543 666777778899999
Q ss_pred cccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCC
Q 002932 312 TVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQ 391 (864)
Q Consensus 312 ~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~ 391 (864)
++.+.+|.....+. .+.. +...++.+ |||||-+++-..+ |-.++.-.| -+|++...+
T Consensus 101 G~~~~~l~~~~~~~----------gl~G----lE~l~gIP----GTVGGAv~mNAGa-yG~ei~d~l----~sV~~~d~~ 157 (302)
T PRK14650 101 GTNFEDLCKFALQN----------ELSG----LEFIYGLP----GTLGGAIWMNARC-FGNEISEIL----DKITFIDEK 157 (302)
T ss_pred CCcHHHHHHHHHHc----------CCch----hhhhcCCC----cchhHHHHhhCCc-cccchheeE----EEEEEEECC
Confidence 99999999875432 1111 12222222 6777766543331 112222122 134555444
Q ss_pred e-eEEEehhhh-hc--CCCCCC-CceEEEEEcCCC
Q 002932 392 K-CEKLMLEEF-LE--RPPLDS-RSILLSVEIPCW 421 (864)
Q Consensus 392 g-~R~vpl~dF-~~--~~~l~~-~Eii~~I~iP~~ 421 (864)
| .++++-+|. |. ...++. +.||+++.+...
T Consensus 158 g~~~~~~~~e~~f~YR~S~f~~~~~iIl~a~f~L~ 192 (302)
T PRK14650 158 GKTICKKFKKEEFKYKISPFQNKNTFILKATLNLK 192 (302)
T ss_pred CCEEEEEHHHcCcccccccCCCCCEEEEEEEEEEc
Confidence 4 566677763 22 233333 346666665443
No 63
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.02 E-value=0.025 Score=62.61 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEeccc
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (864)
.+.+.+ ...++.|+|.+|+.++++-... ..-...++.|||.+.+-.. ..+..+|++++. +..+..+++.+++||+
T Consensus 29 t~~igg~a~~~v~p~~~edl~~~v~~a~~-~~ip~~vlGgGSNllv~d~-g~~gvVI~l~~~--~~~i~~~~~~v~v~AG 104 (302)
T PRK14652 29 AVRVGGPADLLVRPADPDALSALLRAVRE-LGVPLSILGGGANTLVADA-GVRGVVLRLPQD--FPGESTDGGRLVLGAG 104 (302)
T ss_pred EeecCCcceEEEEcCCHHHHHHHHHHHHH-CCCcEEEEcCCcceeecCC-CEeeEEEEecCC--cceEEecCCEEEEECC
Confidence 344555 5578899999999988863211 1346788999999865332 234688998753 5566667789999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe
Q 002932 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (864)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g 392 (864)
+++.+|.+.+.+. .+. -+...++.. |||||++++-... +-.++.=.+. .|++...+|
T Consensus 105 ~~~~~L~~~~~~~----------GL~----GlE~l~gIP----GTvGGav~mNaGa-~ggei~d~v~----~v~vv~~~G 161 (302)
T PRK14652 105 APISRLPARAHAH----------GLV----GMEFLAGIP----GTLGGAVAMNAGT-KLGEMKDVVT----AVELATADG 161 (302)
T ss_pred CcHHHHHHHHHHc----------CCc----ccccccCCC----cchhHHHHHcCCC-CceEhhheEE----EEEEECCCC
Confidence 9999999986543 111 122333322 6999999776531 1022222222 455555666
Q ss_pred eEEEehhh-hhc-C-CCCCCCceEEEEEcCCCC
Q 002932 393 CEKLMLEE-FLE-R-PPLDSRSILLSVEIPCWD 422 (864)
Q Consensus 393 ~R~vpl~d-F~~-~-~~l~~~Eii~~I~iP~~~ 422 (864)
.++++-+| +|. + ..+..+-||+++.+...+
T Consensus 162 ~~~~~~~e~~f~YR~s~~~~~~II~~a~~~L~~ 194 (302)
T PRK14652 162 AGFVPAAALGYAYRTCRLPPGAVITRVEVRLRP 194 (302)
T ss_pred cEEeehhhcCcccceeccCCCeEEEEEEEEEec
Confidence 65677666 343 2 223334577777665543
No 64
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=95.96 E-value=0.013 Score=69.19 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHH
Q 002932 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (864)
Q Consensus 242 ~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (864)
..++|.|.+|+.++++-... ..-...+.+|||++.--..-.....+||++++..+..+..++..++++|++|+.+|.+.
T Consensus 58 ~Vv~P~s~eeV~~iv~~a~~-~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~ 136 (499)
T PRK11230 58 LVVLPKQMEQVQALLAVCHR-LRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQA 136 (499)
T ss_pred EEEeeCCHHHHHHHHHHHHH-cCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHH
Confidence 57899999999998873211 12345678899987221000124689999987665556667788999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcccccc
Q 002932 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (864)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as 366 (864)
+.+.- + .....+.-...+||||||++..
T Consensus 137 l~~~G----------l-------~~~~~p~s~~~~tvGG~ia~na 164 (499)
T PRK11230 137 AAPHG----------L-------YYAPDPSSQIACSIGGNVAENA 164 (499)
T ss_pred HHHcC----------C-------eeCCCCCccccceEcceeccCC
Confidence 76531 0 0112344456799999999753
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=95.95 E-value=0.013 Score=69.14 Aligned_cols=106 Identities=10% Similarity=0.243 Sum_probs=74.4
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
..+++|+|.+|+.++++.... .+-..++++||++..-.. .....+||++++..+-.|..+...++++|++++.+|.+
T Consensus 63 ~~~~~P~s~eEV~~iV~~A~~-~g~~Vr~~GsGhS~sg~a--~t~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~ 139 (541)
T TIGR01676 63 RTFHQPEAIEELEGIVKQANE-KKARIRPVGSGLSPNGIG--LSRAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLVD 139 (541)
T ss_pred ceEECCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCcc--cCCCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHHH
Confidence 568999999999999875421 134588899998863311 11235899998877766777778999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.|...- ..+.+..--+..||||+|+++.-
T Consensus 140 ~L~~~G------------------lal~n~gsi~~~TIGGaiatgtH 168 (541)
T TIGR01676 140 AIKEYG------------------ITLQNFASIREQQIGGIIQVGAH 168 (541)
T ss_pred HHHHcC------------------CEeccCCCCCCceEccccccCCc
Confidence 875430 01112122245789999998743
No 66
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.76 E-value=0.059 Score=59.76 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=90.2
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (864)
..-|+.|.|.+|+.++++-... ..-...+++|||.+.+... .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 A~~~v~p~~~edv~~~v~~a~~-~~ip~~vlGgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~l~ 111 (307)
T PRK13906 37 ADFYITPTKNEEVQAVVKYAYQ-NEIPVTYLGNGSNIIIREG-GIRGIVISLLS---LDHIEVSDDAIIAGSGAAIIDVS 111 (307)
T ss_pred eEEEEEcCCHHHHHHHHHHHHH-cCCCEEEEcCceeEeecCC-CcceEEEEecC---ccceEEeCCEEEEECCCcHHHHH
Confidence 4568999999999988863211 1345788999998865332 23468899866 66777778899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEEEeh
Q 002932 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (864)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g-~R~vpl 398 (864)
+.+.+. .+-.+ ...++. -|||||++++-... |-.++.=.++ .|++...+| .++++-
T Consensus 112 ~~~~~~----------Gl~Gl----E~~~gI----PGtVGGav~mNaGa-yGg~i~D~l~----~v~vv~~~G~~~~~~~ 168 (307)
T PRK13906 112 RVARDY----------ALTGL----EFACGI----PGSIGGAVYMNAGA-YGGEVKDCID----YALCVNEQGSLIKLTT 168 (307)
T ss_pred HHHHHc----------CCccc----hhhcCC----CccHhHHHHhhCCc-chhhhhhhee----EEEEEeCCCCEEEEEH
Confidence 986542 11111 111121 36899998776542 1112111111 334444444 566666
Q ss_pred hh-hhc--CCCCCCC-ceEEEEEcCC
Q 002932 399 EE-FLE--RPPLDSR-SILLSVEIPC 420 (864)
Q Consensus 399 ~d-F~~--~~~l~~~-Eii~~I~iP~ 420 (864)
+| .|. ...+..+ .||+++.+-.
T Consensus 169 ~e~~f~YR~S~~~~~~~ii~~~~~~l 194 (307)
T PRK13906 169 KELELDYRNSIIQKEHLVVLEAAFTL 194 (307)
T ss_pred HHccCcCCcccCCCCCEEEEEEEEEE
Confidence 66 222 2233322 3555554443
No 67
>PLN03136 Ferredoxin; Provisional
Probab=95.67 E-value=0.022 Score=56.21 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=38.1
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.+|+|.-++..++++ ++++++|||.+++. |+. ...+|+.|.||.|.+.+
T Consensus 55 ~~V~l~~~~~~~~~~-~~~g~tILdAa~~~-Gi~-lp~sCr~G~CGtC~~~l 103 (148)
T PLN03136 55 YKVKFITPEGEQEVE-CEEDVYVLDAAEEA-GID-LPYSCRAGSCSSCAGKV 103 (148)
T ss_pred EEEEEecCCCcEEEE-eCCCCcHHHHHHHc-CCC-CCcCCCCccCCCCEEEE
Confidence 345554455445665 67999999999875 754 88899999999999998
No 68
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.65 E-value=0.021 Score=69.32 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=68.8
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCc-eeecccccchhhc
Q 002932 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLED-FTISSCLTLLCSV 88 (864)
Q Consensus 16 ~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~------~G~CGaCtV~~~~~~~~~~~~~~-~~v~sCl~p~~~~ 88 (864)
|+|||+++++ .+++||++.+++. |+.-. .-|. .|.|.-|.|.|.. .. +.+.||.+|+.
T Consensus 1 ~~idg~~~~~---~~g~~il~a~~~~-gi~ip-~~C~~~~l~~~g~Cr~C~v~v~g--------~~~~~~~aC~~~~~-- 65 (603)
T TIGR01973 1 IFIDGKELEV---PKGTTVLQACLSA-GIEIP-RFCYHEKLSIAGNCRMCLVEVEK--------FPDKPVASCATPVT-- 65 (603)
T ss_pred CEECCEEEEe---CCCCHHHHHHHHc-CCCcc-ccCCCCCCCCCCccccCEEEECC--------CCCCcccccCCCCC--
Confidence 5899999886 4799999999864 65333 4575 8999999999931 11 27999999976
Q ss_pred cCceeEEecCCCCCCCCcc----hHhHHHHhcCCCCCCCCChHH
Q 002932 89 NGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPGM 128 (864)
Q Consensus 89 ~g~~i~TvEgl~~~~~~~h----~iq~a~~~~~~~qCG~CtPG~ 128 (864)
+|+.|.| . ..... -+.+.|...|-.-|..|.-+-
T Consensus 66 ~gm~v~t----~--~~~~~~~r~~~~e~ll~~h~~dC~~C~~~g 103 (603)
T TIGR01973 66 DGMKIST----N--SEKVKKAREGVMEFLLINHPLDCPICDQGG 103 (603)
T ss_pred CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 6999998 2 22333 355666778999999999874
No 69
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=95.61 E-value=0.015 Score=72.67 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=73.7
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~ 86 (864)
+|+|+|||+++++ .+++||++.++.. |..-. .=|- .|.|.-|.|.+.. ..+.+.||.+|+.
T Consensus 1 m~~~~idg~~~~~---~~g~~il~a~~~~-g~~ip-~~c~~~~~~~~~~C~~C~v~v~~--------~~~~~~aC~~~~~ 67 (776)
T PRK09129 1 MVEIEIDGKKVEV---PEGSMVIEAADKA-GIYIP-RFCYHKKLSIAANCRMCLVEVEK--------APKPLPACATPVT 67 (776)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCCCC-cccCCCCCCCCCCcceeEEEECC--------CCCcCcccCCCCC
Confidence 4899999999986 4799999999863 43322 1344 5899999999921 1245889999976
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHH
Q 002932 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSA 135 (864)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~l 135 (864)
+|+.|.|-..-- ...-.-+-+.|...|-..|..|.-+--+-+-.+
T Consensus 68 --~gm~v~t~~~~~--~~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~ 112 (776)
T PRK09129 68 --DGMKVFTRSEKA--LKAQKSVMEFLLINHPLDCPICDQGGECQLQDL 112 (776)
T ss_pred --CCCEEEcCCHHH--HHHHHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Confidence 699999821100 011233556677889999999998775544443
No 70
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=95.58 E-value=0.028 Score=69.03 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=71.5
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~ 86 (864)
+++++|||+++++ ++++|+|+..|.. |+.=. .=|- .|.|.-|.|.|... ..+.+.||.+|+.
T Consensus 1 m~~~~Idg~~v~v---~~g~til~a~~~~-gi~IP-~lCy~~~l~~~g~Cr~ClVev~~~-------~~~~~~sC~~~v~ 68 (687)
T PRK09130 1 MVKLKVDGKEIEV---PDGYTLLQACEAA-GAEIP-RFCYHERLSIAGNCRMCLVEVKGG-------PPKPVASCAMPVG 68 (687)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCCcC-cccCCCCCCCCCCCCCCEEEECCC-------CCCcccccCCCCC
Confidence 4799999999886 4799999999864 65533 3464 79999999999310 0368999999976
Q ss_pred hccCceeEEecCCCCCCCCc----chHhHHHHhcCCCCCCCCChHH
Q 002932 87 SVNGCLITTSEGLGNSKTGF----HPIHQRFAGFHASQCGFCTPGM 128 (864)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~----h~iq~a~~~~~~~qCG~CtPG~ 128 (864)
+|+.|.| .+ ... .-+-+.+...|-.-|..|.-|=
T Consensus 69 --~gm~v~T----~s--~~v~~~r~~~le~ll~~Hp~dC~~C~~~g 106 (687)
T PRK09130 69 --EGMVIFT----NT--PMVKKAREGVMEFLLINHPLDCPICDQGG 106 (687)
T ss_pred --CCCEEEe----CC--HHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 7999998 22 222 3355667788999999998754
No 71
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=95.53 E-value=0.04 Score=60.41 Aligned_cols=138 Identities=15% Similarity=0.215 Sum_probs=82.4
Q ss_pred eecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEeccccc
Q 002932 236 LLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVT 314 (864)
Q Consensus 236 ~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT 314 (864)
.+.+ ...|+.|+|.+|+.++++-... ..-...+++|||.+.+... .....+|++.+... .+..++..+++||+++
T Consensus 8 ~igg~a~~~v~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~--~~~~~~~~v~v~aG~~ 83 (284)
T TIGR00179 8 KIGGNARHIVCPESIEQLVNVLDNAKE-EDQPLLILGEGSNLLILDD-GRGGVIINLGKGID--IEDDEGEYVHVGGGEN 83 (284)
T ss_pred ecCceeeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEecceEEEEccC-CcCeEEEECCCCce--EEEecCCEEEEEcCCc
Confidence 3444 4578999999999998863211 2346889999999875432 33468899876422 2233357899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-e
Q 002932 315 ISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-C 393 (864)
Q Consensus 315 l~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g-~ 393 (864)
+.+|.+.+.+. .+. -+...++. -|||||++++-... |-.++.=.| . .|++...+| .
T Consensus 84 ~~~l~~~~~~~----------Gl~----GlE~l~gi----PGtvGGai~mNAGa-yG~~i~d~l--~--~v~vv~~~G~~ 140 (284)
T TIGR00179 84 WHKLVKYALKN----------GLS----GLEFLAGI----PGTVGGAVIMNAGA-YGVEISEVL--V--YATILLATGKT 140 (284)
T ss_pred HHHHHHHHHHC----------CCc----ccccCCCC----CchHHHHHHHhccc-chhehhheE--E--EEEEEeCCCCE
Confidence 99999986542 111 11222222 25899999876552 111111111 1 234444555 4
Q ss_pred EEEehhh
Q 002932 394 EKLMLEE 400 (864)
Q Consensus 394 R~vpl~d 400 (864)
+++.-+|
T Consensus 141 ~~~~~~~ 147 (284)
T TIGR00179 141 EWLTNEQ 147 (284)
T ss_pred EEEEHHH
Confidence 6677666
No 72
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=95.51 E-value=0.036 Score=60.02 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=68.5
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCccccc----CC-CCCCCCccEEEEeecCCCcccCCceeecccccc
Q 002932 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL----GC-GEGGCGACVVLLSKYNPELDQLEDFTISSCLTL 84 (864)
Q Consensus 10 ~~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~----gC-~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p 84 (864)
-+-.+.++|||+++++. ++++|||+..|+. |+.=... +. ..|.|+-|.|-|. + ..+.+.||.+|
T Consensus 65 ~~~~~~I~IDGk~VeV~--~~G~TILeAAr~~-GI~IPtLCy~~~L~p~G~CRlClVEVe------G--~~~lv~AC~tp 133 (297)
T PTZ00305 65 HKPRAIMFVNKRPVEII--PQEENLLEVLERE-GIRVPKFCYHPILSVAGNCRMCLVQVD------G--TQNLVVSCATV 133 (297)
T ss_pred cCCceEEEECCEEEEec--CCCChHHHHHHHc-CCCcCccccCCCCCCCCccceeEEEEC------C--CcCcccccCCc
Confidence 45678999999999872 5799999999864 4432222 22 3789999999992 1 24689999999
Q ss_pred hhhccCceeEEecCCCCCCCCcch----HhHHHHhcCCCCCCCCChH
Q 002932 85 LCSVNGCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTPG 127 (864)
Q Consensus 85 ~~~~~g~~i~TvEgl~~~~~~~h~----iq~a~~~~~~~qCG~CtPG 127 (864)
+. +|+.|.| . ...+.. +-+.|...|-.-|..|.-+
T Consensus 134 V~--eGM~V~T----~--Se~v~~~Rk~vLElLLs~Hp~DC~~C~k~ 172 (297)
T PTZ00305 134 AL--PGMSIIT----D--SRLVRDAREGNVELILINHPNDCPICEQA 172 (297)
T ss_pred CC--CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCcCCcccCc
Confidence 76 6999998 2 223333 3444556666667776653
No 73
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.46 E-value=0.02 Score=64.33 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=40.1
Q ss_pred EEEEE---CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 14 VVFAV---NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 14 i~~~l---Ng~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.+++| ||+.+.++ +.++.|||+.|++. |+ ....+|++|.||.|.|-+
T Consensus 3 ~~v~~~~~~~~~~~~~-~~~g~tlL~a~~~~-g~-~~p~~C~~G~Cg~C~~~~ 52 (340)
T PRK11872 3 HKVALSFADGKTLFFP-VGKDELLLDAALRN-GI-NLPLDCREGVCGTCQGRC 52 (340)
T ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHc-CC-CCcCCCCCeECCCCEEEE
Confidence 45666 89988886 68999999999875 75 678899999999999988
No 74
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=95.45 E-value=0.13 Score=61.54 Aligned_cols=159 Identities=14% Similarity=0.268 Sum_probs=91.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (864)
...+++|+|.+|+.++++.... .+...+++++|.+..-.- .....+||++++..+-.|..+...++++|++++.+|.
T Consensus 97 p~~vv~P~S~eEV~~iV~~A~~-~g~~VrvvGsGhS~~~l~--~td~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~ 173 (573)
T PLN02465 97 TRRYHQPESLEELEDIVKEAHE-KGRRIRPVGSGLSPNGLA--FSREGMVNLALMDKVLEVDKEKKRVTVQAGARVQQVV 173 (573)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCcCCCCee--eCCCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHHH
Confidence 3468999999999999875321 234688888887542210 1123579998765544445555789999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCch-HHHHHhcCcEEEEEeCCe-eEEEe
Q 002932 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-ATVLLGAGAMVNIMTGQK-CEKLM 397 (864)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~-~p~LlaldA~v~l~s~~g-~R~vp 397 (864)
+.+.+.- | ++...++. +.+||||.|+++.-. +.. ...+-..=-.++|...+| ..++.
T Consensus 174 ~~L~~~G-------------L--al~n~g~I---~~~TIGGaIstGtHG---tG~~~g~i~d~V~~l~lVta~G~vv~~s 232 (573)
T PLN02465 174 EALRPHG-------------L--TLQNYASI---REQQIGGFIQVGAHG---TGARIPPIDEQVVSMKLVTPAKGTIELS 232 (573)
T ss_pred HHHHHcC-------------C--EeccCCCC---CCeeecchhhCCCCC---cCCCcCcHhheEEEEEEEECCCCEEEEC
Confidence 9876430 0 01122221 357999999766432 110 111111112334444433 44444
Q ss_pred hh---hhhc--CCCCCCCceEEEEEcCCCC
Q 002932 398 LE---EFLE--RPPLDSRSILLSVEIPCWD 422 (864)
Q Consensus 398 l~---dF~~--~~~l~~~Eii~~I~iP~~~ 422 (864)
-+ |.|. ...+..--||+++.|-..+
T Consensus 233 ~~~~pdLF~aar~glG~lGVIteVTLql~P 262 (573)
T PLN02465 233 KEDDPELFRLARCGLGGLGVVAEVTLQCVP 262 (573)
T ss_pred CCCCHHHHhHhhccCCCCcEEEEEEEEEEe
Confidence 32 3343 2333333599998886544
No 75
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=95.41 E-value=0.016 Score=66.98 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred EecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHH
Q 002932 244 HSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (864)
Q Consensus 244 ~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v--~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (864)
++|.|.+|+.++++.... ..-...+.+|||.+.- .. .....+||++++..+..|..++..++++|++++.+|.+.
T Consensus 2 v~P~s~eev~~iv~~a~~-~~i~v~~~G~Gt~~~g~~~~--~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHE-HRIPIVPRGAGTGLSGGALP--EEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEEECCCCCCCCCccC--CCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 479999999988773211 1335788899998741 11 124578898775544444445689999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcccccc
Q 002932 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (864)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as 366 (864)
+.+.- ..+| -.+.-...+||||+|++..
T Consensus 79 l~~~g--------l~~~---------~~p~s~~~~tiGG~ia~na 106 (413)
T TIGR00387 79 VEEHN--------LFYP---------PDPSSQISSTIGGNIAENA 106 (413)
T ss_pred HHHcC--------CeeC---------CCCcccccceehhhhhcCC
Confidence 76531 0111 1344556799999998754
No 76
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=95.36 E-value=0.044 Score=53.69 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=54.5
Q ss_pred CCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEeec-----CC---------Ccc-cCCceeecccc
Q 002932 19 NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKY-----NP---------ELD-QLEDFTISSCL 82 (864)
Q Consensus 19 Ng~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~-~G~CGaCtV~~~~~-----~~---------~~~-~~~~~~v~sCl 82 (864)
||++++++ +.+..+|++.|++. +.-+.-.-|+ .|.||-|.|.|..- .+ ... ........||.
T Consensus 44 dG~~~~v~-~~~G~sLLeal~~~-~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~gsRLaCQ 121 (143)
T PTZ00490 44 DGTHCDVE-VPVGMSLMHALRDV-AKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLACQ 121 (143)
T ss_pred CCCEEEEE-ECCCccHHHHHHHc-CCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCCCcEEeee
Confidence 37888887 79999999999985 3345555788 99999999999551 00 000 12334458999
Q ss_pred cchhh-ccCceeEEecC
Q 002932 83 TLLCS-VNGCLITTSEG 98 (864)
Q Consensus 83 ~p~~~-~~g~~i~TvEg 98 (864)
+.+.. ++|..|..-|-
T Consensus 122 i~v~~~ldgl~V~vp~~ 138 (143)
T PTZ00490 122 VDLTPEMDGLEVELPSY 138 (143)
T ss_pred EEEecCCCCEEEEeCcc
Confidence 88865 67877775544
No 77
>PTZ00038 ferredoxin; Provisional
Probab=95.35 E-value=0.038 Score=56.58 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=40.6
Q ss_pred CCceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 002932 8 GGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (864)
Q Consensus 8 ~~~~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~ 64 (864)
.+....|+|.++...++++ +.++++||+.+++. |+ ....+|+.|.||.|.|-+.
T Consensus 92 ~~~~~~Vt~~~~~g~~~~~-v~~geTILdAae~a-GI-~lp~sCr~G~CGtCkvrV~ 145 (191)
T PTZ00038 92 NPLFYNITLQTPDGEKVIE-CDEDEYILDAAERQ-GV-ELPYSCRGGSCSTCAAKLL 145 (191)
T ss_pred CCceEEEEEEeCCCcEEEE-eCCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEeEEe
Confidence 3444567776442234555 57899999999875 75 7888999999999999983
No 78
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=95.29 E-value=0.043 Score=63.85 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=70.1
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
..+++|+|.+|+.++++.... .+-..++++||++..-.- .....+||++++..+..+..+.+.++++|++++.+|.+
T Consensus 16 ~~v~~P~s~eev~~iv~~A~~-~~~~v~v~G~GhS~s~~~--~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~ 92 (438)
T TIGR01678 16 EVYYQPTSVEEVREVLALARE-QKKKVKVVGGGHSPSDIA--CTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHE 92 (438)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEECCCCCCCCCc--cCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHH
Confidence 357999999999998874321 133578889986643210 12358999988655544555557899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.+.+.- + . +...++ =+..||||.|+++.-
T Consensus 93 ~L~~~G----------l---~--l~~~g~---~~~~TvGG~iatg~h 121 (438)
T TIGR01678 93 QLDEHG----------Y---S--MSNLGS---ISEVSVAGIISTGTH 121 (438)
T ss_pred HHHHcC----------C---E--ecCCCC---CCCceeeehhcCCCC
Confidence 875420 0 0 111122 145899998876654
No 79
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=95.22 E-value=0.049 Score=63.91 Aligned_cols=109 Identities=19% Similarity=0.096 Sum_probs=71.1
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eee---cccCceeeeCCCCccccceEecCCcEEecccccH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKE---VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTI 315 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v--~k~---~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl 315 (864)
.-.++|.|.+|..++++-... ..-....-+|||+|.= ... ..+..++||+.++..+..|. ++..+++.+++|+
T Consensus 40 ~AVV~P~SteEVa~IVklC~e-~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl 117 (564)
T PRK11183 40 LAVVFPGTLLELWRVLQACVA-ADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTL 117 (564)
T ss_pred CEEEecCCHHHHHHHHHHHHH-cCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcH
Confidence 457899999999998873210 1223556699998722 221 12346899998876665565 4678999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 316 SKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.+|.+.++..- .+|.. .++|.+|- +||||||++.+.
T Consensus 118 ~~LeeaLk~~G---------l~p~s-----d~GSS~IG--asIGGnIAtNAG 153 (564)
T PRK11183 118 YQLEKALKPLG---------REPHS-----VIGSSCIG--ASVIGGICNNSG 153 (564)
T ss_pred HHHHHHHHHhC---------CCCCC-----cccccccC--CCCccceEECCc
Confidence 99999887531 11110 11332222 489999998876
No 80
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=95.13 E-value=0.03 Score=70.59 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=73.7
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~ 86 (864)
+++|+|||+.+++ .+++|||+.++.. |+. +-..|. .|.|+.|.|.|..-.. +-..+.+.||.+|+.
T Consensus 1 ~~~i~idg~~~~~---~~g~til~a~~~~-gi~-ip~~C~~~~~~~~G~C~~C~v~v~~g~~---~~~~~~~~aC~~~v~ 72 (847)
T PRK08166 1 MATIHVDGKEYEV---NGADNLLEACLSL-GID-IPYFCWHPALGSVGACRQCAVKQYQNPE---DTRGRLVMSCMTPAT 72 (847)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCC-CCccccCCCCCCCCccCCCeEEEeecCc---cCCCCcccCcCCCCC
Confidence 4789999999775 5799999999864 532 345898 5999999999942110 112457889999876
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHH
Q 002932 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129 (864)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~v 129 (864)
+|..|.|-.--- ...-.-+.+.|...|-..|..|.-|-=
T Consensus 73 --~gm~v~t~~~~~--~~~r~~~~e~ll~~hp~dc~~c~~~g~ 111 (847)
T PRK08166 73 --DGTFISIDDPEA--KAFRASVVEWLMTNHPHDCPVCEEGGN 111 (847)
T ss_pred --CCCEEEeCCHHH--HHHHHHHHHHHHhcCCCCCCccCCCCC
Confidence 499998732110 111233677788899999999987633
No 81
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=95.05 E-value=0.15 Score=61.06 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=55.2
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEcc-CccceEe-eecccC-ceeeeCCCCccccceEecCCcEEecccccHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAG-NTGMGYY-KEVEHY-DKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaG-gTdl~v~-k~~~~~-~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (864)
..+++|+|.+|+.++++.... .+...++++| |..+.-. ...... ..+||++++..+-.|..+...++++|++++.+
T Consensus 33 ~~vv~P~s~eeV~~iV~~A~~-~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~ 111 (557)
T TIGR01677 33 ANVAYPKTEAELVSVVAAATA-AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRE 111 (557)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHH
Confidence 357899999999999874321 1234566654 3333211 110112 38999998665555565667899999999999
Q ss_pred HHHHHHH
Q 002932 318 AIEALKE 324 (864)
Q Consensus 318 l~~~l~~ 324 (864)
|.+.|.+
T Consensus 112 L~~~L~~ 118 (557)
T TIGR01677 112 LIVEAEK 118 (557)
T ss_pred HHHHHHH
Confidence 9998764
No 82
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.96 E-value=0.16 Score=56.23 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=59.2
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHH
Q 002932 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (864)
Q Consensus 240 ~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (864)
..-++.|.|.+|+.++++-... ..-...++.|||.+.+-.. .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 a~~vv~p~~~edv~~~l~~a~~-~~ip~~v~GgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~L~ 111 (305)
T PRK12436 37 ADVFVAPTNYDEIQEVIKYANK-YNIPVTFLGNGSNVIIKDG-GIRGITVSLIH---ITGVTVTGTTIVAQCGAAIIDVS 111 (305)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCCEEEEcCCeEEEEeCC-CeeEEEEEeCC---cCcEEEeCCEEEEEeCCcHHHHH
Confidence 3468899999999988862211 1345788999999865332 23467899875 55667778899999999999999
Q ss_pred HHHHH
Q 002932 320 EALKE 324 (864)
Q Consensus 320 ~~l~~ 324 (864)
+.+.+
T Consensus 112 ~~~~~ 116 (305)
T PRK12436 112 RIALD 116 (305)
T ss_pred HHHHH
Confidence 87654
No 83
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.93 E-value=0.054 Score=61.14 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=44.1
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 002932 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (864)
Q Consensus 10 ~~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~ 64 (864)
....|+|..+|+.+++..+++++|||+.+.+. |+ -+..+|+.|.||+|.|-+-
T Consensus 261 ~~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~-gi-~~~~~C~~G~Cg~C~~~~~ 313 (352)
T TIGR02160 261 DVSKVTVTLDGRSTETSSLSRDESVLDAALRA-RP-DLPFACKGGVCGTCRAKVL 313 (352)
T ss_pred CceEEEEEECCceEEEEecCCCCcHHHHHHHc-CC-CCcCCCCCccCCCCEEEEe
Confidence 44679999999988643378999999999764 75 6888999999999999983
No 84
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=94.85 E-value=0.043 Score=65.61 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=72.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
...++|+|.+|+.++++.... ..-...+.+|||++.=..-......+||++++..+..+..++..++++|++++.+|.+
T Consensus 135 ~~Vv~P~s~eeV~~ivk~a~~-~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~ 213 (555)
T PLN02805 135 DVVVFPRSEEEVSKIVKSCNK-YKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNE 213 (555)
T ss_pred CEEEEcCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHH
Confidence 357889999999988873211 1235678899998742100012358999988766666667788999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.+++.- ..+|.. +. ..+||||+|++..-
T Consensus 214 ~L~~~G--------l~~p~~---------p~--~~~TIGG~ia~n~~ 241 (555)
T PLN02805 214 YLEPYG--------LFFPLD---------PG--PGATIGGMCATRCS 241 (555)
T ss_pred HHHHcC--------CEeCCC---------Cc--cccChhhHhhCCCc
Confidence 876531 112211 11 34799999987743
No 85
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=94.65 E-value=0.051 Score=51.57 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=40.7
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEE
Q 002932 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLL 63 (864)
Q Consensus 13 ~i~~-~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~-~G~CGaCtV~~ 63 (864)
+|+| ..+|+.++++ +.+++||++.+++. |+. .-..|+ .|.||.|-|.|
T Consensus 2 ~V~fi~~~G~~~~v~-~~~G~tLl~a~~~~-gi~-i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 2 SVTFVDKDGEERTVK-APVGMSLLEAAHEN-DIE-LEGACEGSLACSTCHVIV 51 (117)
T ss_pred EEEEEcCCCCEEEEE-ECCCCcHHHHHHHc-CCC-CCccCCCcceeCCCEEEE
Confidence 5777 4789888887 68999999999875 774 677899 59999999999
No 86
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=94.20 E-value=0.097 Score=60.67 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=90.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHH
Q 002932 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (864)
..+++|+|.+|+.++++.. ....++++||++..-.. .....+||++++..+-.+..+++.++++|++++.+|.+
T Consensus 13 ~~v~~P~s~~ev~~~v~~a----~~~v~~~G~Ghs~~~~~--~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~ 86 (419)
T TIGR01679 13 SAIVRPTDEGELADVIAQA----AKPVRAVGSGHSFTDLA--CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGP 86 (419)
T ss_pred CeEECCCCHHHHHHHHHHh----CCCEEEEeCCCCCCCcc--cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHH
Confidence 3578999999999998853 22588888887754321 12358999988655444455578999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCch-HHHHHhcCcEEEEEeCCee-EEEeh
Q 002932 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-ATVLLGAGAMVNIMTGQKC-EKLML 398 (864)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~-~p~LlaldA~v~l~s~~g~-R~vpl 398 (864)
.+.+.- ..+| ..++ + +..||||.|++..-. +.. ...+...=-.++|...+|+ +++.-
T Consensus 87 ~L~~~G--------~~l~-------~~~~--~-~~~tvGG~ia~~~hG---~g~~~G~~~d~V~~l~vV~a~G~v~~~~~ 145 (419)
T TIGR01679 87 QLAQRG--------LGLE-------NQGD--I-DPQSIGGALGTATHG---TGVRFQALHARIVSLRLVTAGGKVLDLSE 145 (419)
T ss_pred HHHHcC--------Cccc-------cCCC--C-CCceeccceecCCCC---CCccCCchhhhEEEEEEEcCCCCEEEEcC
Confidence 876431 0111 1122 2 347999999875432 100 0011111123444455553 33322
Q ss_pred ---hhhhc--CCCCCCCceEEEEEcCCCC
Q 002932 399 ---EEFLE--RPPLDSRSILLSVEIPCWD 422 (864)
Q Consensus 399 ---~dF~~--~~~l~~~Eii~~I~iP~~~ 422 (864)
.|.|. ...+..=-||+++.+...+
T Consensus 146 ~~~~dLf~a~~g~~G~lGVIt~vtl~~~p 174 (419)
T TIGR01679 146 GDDQDMYLAARVSLGALGVISQVTLQTVA 174 (419)
T ss_pred CCCHHHHHHHHhCCCceEEEEEEEEEeec
Confidence 24443 2233334578887776544
No 87
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.17 E-value=0.32 Score=54.46 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCC--cEEec
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQT--GIEIG 310 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~--~l~IG 310 (864)
++.+++ -..|+.|.|.+|+.++++-... ..-...+|.||+-+.+-. ..+..+|.+ ++.+++.+..+++ .|++|
T Consensus 14 t~riGG~A~~~~~p~~~~el~~~~~~~~~-~~~p~~vlG~GSNlLv~D--~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~ 89 (334)
T PRK00046 14 TFGIDARARHLVEAESEEQLLEALADARA-AGLPVLVLGGGSNVLFTE--DFDGTVLLN-RIKGIEVLSEDDDAWYLHVG 89 (334)
T ss_pred eeccCcEEeEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceEEEEECC--CCCEEEEEe-cCCceEEEecCCCeEEEEEE
Confidence 445566 5668899999999998874321 133578899999887643 345667765 3433322111333 69999
Q ss_pred ccccHHHHHHHHHH
Q 002932 311 ATVTISKAIEALKE 324 (864)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (864)
|++.+.+|.....+
T Consensus 90 AG~~~~~l~~~~~~ 103 (334)
T PRK00046 90 AGENWHDLVLWTLQ 103 (334)
T ss_pred cCCcHHHHHHHHHH
Confidence 99999999997554
No 88
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.08 E-value=0.22 Score=56.42 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=60.9
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEec--CCcEEec
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD--QTGIEIG 310 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~--~~~l~IG 310 (864)
++.+.+ ...|+.|.|.+|+.++++.... ..-...++.||+.+.+-.. ..+..+|+++. +.|+.+ ++.|++|
T Consensus 26 t~~iGg~A~~~~~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNlLv~D~-g~~GvVI~l~~----~~i~i~~~~~~v~vg 99 (363)
T PRK13903 26 TLRVGGPARRLVTCTSTEELVAAVRELDA-AGEPLLVLGGGSNLVIADD-GFDGTVVRVAT----RGVTVDCGGGLVRAE 99 (363)
T ss_pred EeecCccceEEEEeCCHHHHHHHHHHHHH-CCCCEEEEeCCeeEeECCC-CccEEEEEeCC----CcEEEeCCCCEEEEE
Confidence 455556 4567899999999998863211 2346889999999865332 34568898863 455554 6789999
Q ss_pred ccccHHHHHHHHHH
Q 002932 311 ATVTISKAIEALKE 324 (864)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (864)
|++++.++.....+
T Consensus 100 AG~~~~~l~~~a~~ 113 (363)
T PRK13903 100 AGAVWDDVVARTVE 113 (363)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999997543
No 89
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=94.04 E-value=0.086 Score=48.80 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=36.9
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 002932 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (864)
Q Consensus 15 ~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~~ 64 (864)
....+|+......++.+.+||+.+.++ |+. .-.+|+.|.||+|.|.|.
T Consensus 6 ~v~~~~~~~~~~~~~~g~tiLe~a~~~-gi~-i~~~C~~g~C~TC~v~v~ 53 (102)
T COG0633 6 FVTIDGEGDVTEAVNEGETLLEAAERN-GIP-IEYACRGGACGTCRVKVL 53 (102)
T ss_pred EEeccCCcceEEeccCCcHHHHHHHHC-CCc-ceecCCCCccCccEEEEe
Confidence 344455445555456799999999765 766 779999999999999994
No 90
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=93.94 E-value=0.075 Score=59.55 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=36.6
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
.+++.+++...++. ++++.|||+.|++. |+ -+..+|+.|.||.|.|-+
T Consensus 248 ~~~v~~~~~~~~~~-~~~~~~lL~~~~~~-gi-~~~~~C~~G~Cg~C~~~~ 295 (332)
T PRK10684 248 GLTFTKLQPAREFY-APVGTTLLEALESN-KV-PVVAACRAGVCGCCKTKV 295 (332)
T ss_pred ceEEEEecCCEEEE-eCCCChHHHHHHHc-CC-CccCCCCCcCCCCCEEEE
Confidence 34444544444444 56899999999764 75 688999999999999998
No 91
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=93.91 E-value=0.066 Score=60.08 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=38.3
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
..|+|.-+|+.++ ++++++||+.|++. |+. ...+|+.|.||.|.|.+
T Consensus 3 ~~v~~~~~~~~~~---~~~g~tlL~a~~~~-gi~-~~~~C~~G~Cg~C~~~~ 49 (339)
T PRK07609 3 FQVTLQPSGRQFT---AEPDETILDAALRQ-GIH-LPYGCKNGACGSCKGRL 49 (339)
T ss_pred EEEEEecCCeEEE---eCCCCcHHHHHHHc-CCC-CCCCCCCeECCCCEEEE
Confidence 3577777776655 46799999999875 754 78999999999999988
No 92
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.81 E-value=0.29 Score=54.00 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=60.6
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCC--cEEec
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQT--GIEIG 310 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~--~l~IG 310 (864)
++.+.+ ...|+.|+|.+|+.++++-... ..-...++.||+-+.+... .....+|++++. .+ .+..+++ .+++|
T Consensus 14 t~~iGg~a~~~v~p~~~~dl~~~l~~~~~-~~ip~~vlG~GSNlL~~d~-g~~GvVI~l~~~-~~-~i~~~~~~~~v~v~ 89 (295)
T PRK14649 14 SWRIGGPARYFVEPTTPDEAIAAAAWAEQ-RQLPLFWLGGGSNLLVRDE-GFDGLVARYRGQ-RW-ELHEHGDTAEVWVE 89 (295)
T ss_pred EeeeCceeeEEEEcCCHHHHHHHHHHHHH-CCCCEEEEecceeEEEeCC-CcCeEEEEecCC-Cc-EEEEeCCcEEEEEE
Confidence 455566 5668889999999998763321 2345788999998865433 345688888652 23 4444444 79999
Q ss_pred ccccHHHHHHHHHH
Q 002932 311 ATVTISKAIEALKE 324 (864)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (864)
|++++.++...+.+
T Consensus 90 AG~~~~~l~~~~~~ 103 (295)
T PRK14649 90 AGAPMAGTARRLAA 103 (295)
T ss_pred cCCcHHHHHHHHHH
Confidence 99999999997543
No 93
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=93.28 E-value=0.13 Score=48.30 Aligned_cols=42 Identities=19% Similarity=0.514 Sum_probs=32.7
Q ss_pred CCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 002932 19 NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (864)
Q Consensus 19 Ng~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~-~G~CGaCtV~~~~ 65 (864)
+|+.++ +.++++||+.|++. |+. +-..|+ .|.||.|-|.|..
T Consensus 14 ~~~~~~---~~~g~tLL~a~~~~-gi~-i~~~CgG~G~CgtC~v~V~~ 56 (110)
T TIGR02007 14 EGAVVE---AKPGETILDVALDN-GIE-IEHACEKSCACTTCHCIVRE 56 (110)
T ss_pred CCeEEE---ECCCChHHHHHHHc-CCC-ccccCCCCceeCCCEEEEee
Confidence 355444 46899999999875 665 777998 7999999998843
No 94
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=92.89 E-value=0.72 Score=50.25 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred ceeecCCceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccc
Q 002932 234 AMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (864)
Q Consensus 234 ~~~~~~~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (864)
++.+.+.-+|+.|.|.+|+.++++ -...++.||+-+.+-.. .....+|-+++. +..++.++ ++||++
T Consensus 14 t~riGG~A~~~~p~~~~~l~~~~~-------~p~~vlG~GSNlL~~D~-g~~g~vI~l~~~--~~~~~~~~---~a~AG~ 80 (273)
T PRK14651 14 TLGVGGPAELWTVETHEQLAEATE-------APYRVLGGGSNLLVSDA-GVPERVIRLGGE--FAEWDLDG---WVGGGV 80 (273)
T ss_pred EeecCceEEEEecCCHHHHHHHHC-------CCeEEEeceeEEEEcCC-CcceEEEEECCc--ceeEeECC---EEECCC
Confidence 455566444545999999999885 45788899988866433 344567776542 45555443 799999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCee
Q 002932 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKC 393 (864)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~~g~ 393 (864)
.+.+|.....+. .+. -+.++++.+ |||||-+++-..+ |-.++.-.|. .|++...+..
T Consensus 81 ~~~~l~~~~~~~----------gl~----GlE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l~----~V~~~~~g~~ 137 (273)
T PRK14651 81 PLPGLVRRAARL----------GLS----GLEGLVGIP----AQVGGAVKMNAGT-RFGEMADALH----TVEIVHDGGF 137 (273)
T ss_pred cHHHHHHHHHHC----------CCc----chhhhcCCC----cchhhHHHhhCCc-cccChheeEE----EEEEEECCCE
Confidence 999999975432 111 122223322 7888877554332 1134433333 2333343447
Q ss_pred EEEehhh-hhc--CCCCCCCceEEEEEcCCCCc
Q 002932 394 EKLMLEE-FLE--RPPLDSRSILLSVEIPCWDL 423 (864)
Q Consensus 394 R~vpl~d-F~~--~~~l~~~Eii~~I~iP~~~~ 423 (864)
++++-+| .|. ...++.+.||+++.+...+.
T Consensus 138 ~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 138 HQYSPDELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEEEHHHccccccccCCCCCEEEEEEEEEECCC
Confidence 7888888 333 44555566888887766543
No 95
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=92.58 E-value=0.14 Score=59.07 Aligned_cols=50 Identities=28% Similarity=0.556 Sum_probs=39.9
Q ss_pred eeEEEEEECCE-EEEEecCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEE
Q 002932 11 RHSVVFAVNGE-KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLL 63 (864)
Q Consensus 11 ~~~i~~~lNg~-~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~-G~CGaCtV~~ 63 (864)
+.++++++||. ..+++ +.+++|||+.++.. |+. ....|+. |.||.|-|.+
T Consensus 33 ~~~~~i~~~~~~~~~~~-~~~g~tLL~a~~~~-gi~-i~~~C~g~G~CgtC~v~v 84 (409)
T PRK05464 33 SGDVTIKINGDPEKTIT-VPAGGKLLGALASN-GIF-LSSACGGGGSCGQCRVKV 84 (409)
T ss_pred CccEEEEEcCCCcEEEE-ECCCchHHHHHHHc-CCC-cccCCCCccEeCCCEEEE
Confidence 35688899983 45565 67899999999865 764 6678995 9999999998
No 96
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.49 E-value=0.15 Score=58.74 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=39.1
Q ss_pred eEEEEEECC-EEEEEecCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEE
Q 002932 12 HSVVFAVNG-EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLL 63 (864)
Q Consensus 12 ~~i~~~lNg-~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~-G~CGaCtV~~ 63 (864)
..|++++|| +..+++ +.+++|||+.++.. |+. ....|+. |.||.|.|.+
T Consensus 30 ~~v~v~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~g~G~Cg~C~v~v 80 (405)
T TIGR01941 30 GDITIGINDDEEKSIT-VPAGGKLLNTLASN-GIF-ISSACGGGGTCGQCRVRV 80 (405)
T ss_pred ccEEEEEcCCCceEEE-ECCCChHHHHHHHc-CCC-CcccCCCccEeCCCEEEE
Confidence 358999985 445555 57899999999875 664 6778995 8999999998
No 97
>PRK05713 hypothetical protein; Provisional
Probab=91.83 E-value=0.24 Score=55.07 Aligned_cols=44 Identities=27% Similarity=0.538 Sum_probs=35.9
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 002932 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 15 ~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~~G~CGaCtV~~ 63 (864)
+|..||+.+++ .+++|||+.+++. |+ -...+|+.|.||.|.|.+
T Consensus 3 ~~~~~~~~~~~---~~g~tlL~a~~~~-gi-~~~~~C~~G~Cg~C~~~~ 46 (312)
T PRK05713 3 ELRVGERRWSV---PAGSNLLDALNAA-GV-AVPYSCRAGSCHACLVRC 46 (312)
T ss_pred cEecCCeEEEE---CCCCcHHHHHHHc-CC-CCCcCCCCcCCCCCeEEE
Confidence 67889987665 5799999999864 54 345689999999999998
No 98
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.55 E-value=2.1 Score=46.91 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=94.3
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccc
Q 002932 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (864)
Q Consensus 235 ~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (864)
..+.+ ...|+.|++.+|+.++++.... ..-...++.||+-+.+... ....++|.+...- ...+..+++.|++||++
T Consensus 15 friGg~A~~~~~~~~~e~l~~~~~~~~~-~~~p~~ilG~GSNlLv~d~-g~~gvvi~~~~~~-~~~~~~~~~~i~a~aG~ 91 (291)
T COG0812 15 FRIGGPAEVLVEPRDIEELKAALKYAKA-EDLPVLILGGGSNLLVRDG-GIGGVVIKLGKLN-FIEIEGDDGLIEAGAGA 91 (291)
T ss_pred EecCcceeEEEecCCHHHHHHHHHhhhh-cCCCEEEEecCceEEEecC-CCceEEEEccccc-ceeeeccCCeEEEccCC
Confidence 44455 5678999999999998875421 1345788888888866544 2344555554431 12233344499999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH---HhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeC
Q 002932 314 TISKAIEALKEETKEFHSEALMVFKKIAGHME---KIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG 390 (864)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~---~ias~qIRN~aTiGGNI~~asp~~f~sD~~p~LlaldA~v~l~s~ 390 (864)
.+.+|.....+. .+..|--++. .+|+-.+-|.|+-|+.|. |.+ -+|++...
T Consensus 92 ~~~~l~~~~~~~----------gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~---------d~~-------~~v~~ld~ 145 (291)
T COG0812 92 PWHDLVRFALEN----------GLSGLEFLAGIPGSVGGAVIMNAGAYGVEIS---------DVL-------VSVEVLDR 145 (291)
T ss_pred cHHHHHHHHHHc----------CCcchhhhcCCCcccchhhhccCcccccchh---------eeE-------EEEEEEcC
Confidence 999999875443 2333322221 334444444444444332 222 14555565
Q ss_pred Ce-eEEEehhh-hhc--CCCCCCC-ceEEEEEcCCCC
Q 002932 391 QK-CEKLMLEE-FLE--RPPLDSR-SILLSVEIPCWD 422 (864)
Q Consensus 391 ~g-~R~vpl~d-F~~--~~~l~~~-Eii~~I~iP~~~ 422 (864)
+| .+++.-+| -|. ...++.. -+|+++.+...+
T Consensus 146 ~G~~~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 146 DGEVRWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred CCCEEEEEHHHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 66 68899888 333 3344444 688888876654
No 99
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=91.45 E-value=0.22 Score=60.56 Aligned_cols=97 Identities=24% Similarity=0.386 Sum_probs=69.4
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCccc----ccCCC-CCCCCccEEEEeecCCCcccCCc--eeecccccch
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----KLGCG-EGGCGACVVLLSKYNPELDQLED--FTISSCLTLL 85 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~----K~gC~-~G~CGaCtV~~~~~~~~~~~~~~--~~v~sCl~p~ 85 (864)
+++++|||+.++++ .+.|||+..|+. |+.=. -.+|+ -|.|.-|.|-+ ++ +++.||.+|
T Consensus 1 m~tI~IDG~ei~v~---~g~tvLqAa~~a-Gi~IP~fCyh~~ls~~GaCRmClVEv----------eg~~k~~~SC~tp- 65 (693)
T COG1034 1 MVTITIDGKEIEVP---EGETVLQAAREA-GIDIPTFCYHPRLSIAGACRMCLVEV----------EGAPKLVASCATP- 65 (693)
T ss_pred CeEEEECCEEEecC---CCcHHHHHHHHc-CCCCCcccccCCCCcccceeEEEEEe----------cCCCccccccccc-
Confidence 47899999999875 588999999863 54322 22344 68899999988 34 899999996
Q ss_pred hhccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 002932 86 CSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (864)
Q Consensus 86 ~~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (864)
.-+|+.|-|==-.- +..-+-|-+.+..+|-.=|+-|--|
T Consensus 66 -v~dGM~I~T~s~~v--k~~R~~vmE~LLiNHPlDCpiCD~g 104 (693)
T COG1034 66 -VTDGMVISTNSEEV--KKAREGVMEFLLINHPLDCPVCDKG 104 (693)
T ss_pred -cCCCeEEecCCHHH--HHHHHHHHHHHHhcCCCCCCccCCC
Confidence 45788776510000 1123457778888999999999876
No 100
>PLN02441 cytokinin dehydrogenase
Probab=90.96 E-value=0.71 Score=54.84 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=56.3
Q ss_pred ceEEecCCHHHHHHHHhhhcCC-CCCcceEEccCccceEeeecccCceeeeCCCCcc------ccceEecCCcEEecccc
Q 002932 241 GSWHSPISVQELRNVLESVEGS-NQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPE------LSVIRRDQTGIEIGATV 313 (864)
Q Consensus 241 ~~~~~P~tl~eal~ll~~~~~~-~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~E------L~~I~~~~~~l~IGA~v 313 (864)
...++|+|.+|+.++++..... ..-..++.+||+++.-... .....+||++++.. +..+..+...+++||++
T Consensus 66 ~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~ 144 (525)
T PLN02441 66 AAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-APGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGE 144 (525)
T ss_pred CEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCC
Confidence 4578999999999998854210 1123567788888742111 12468999998766 23344456789999999
Q ss_pred cHHHHHHHHH
Q 002932 314 TISKAIEALK 323 (864)
Q Consensus 314 Tl~~l~~~l~ 323 (864)
++.++.+.+.
T Consensus 145 ~~~dv~~~l~ 154 (525)
T PLN02441 145 LWIDVLKATL 154 (525)
T ss_pred CHHHHHHHHH
Confidence 9999988754
No 101
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.89 E-value=0.54 Score=52.86 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=60.1
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceE-ecC-CcEEec
Q 002932 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIR-RDQ-TGIEIG 310 (864)
Q Consensus 234 ~~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~-~~~-~~l~IG 310 (864)
.+.+++ ...|+.|.|.+|+.++++.... ..-...++.||+-+.+-.. ..+..+|.+.++.++.... .++ ..|++|
T Consensus 23 T~rIGG~A~~~~~p~s~~el~~~l~~~~~-~~~p~~iLG~GSNlL~~D~-g~~G~VI~l~~~~~i~i~~~~~~~~~v~ag 100 (354)
T PRK14648 23 SFRIGGAAQFWAEPRSCTQLRALIEEAQR-ARIPLSLIGGGSNVLIADE-GVPGLMLSLRRFRSLHTQTQRDGSVLVHAG 100 (354)
T ss_pred eeeeCcEEEEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEeCC-CccEEEEEeCCcCceEEeeccCCcEEEEEE
Confidence 455666 5678999999999998874321 1235778888888766443 3556788875554443111 233 369999
Q ss_pred ccccHHHHHHHHHH
Q 002932 311 ATVTISKAIEALKE 324 (864)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (864)
|++.+.+|.....+
T Consensus 101 AG~~~~~Lv~~~~~ 114 (354)
T PRK14648 101 AGLPVAALLAFCAH 114 (354)
T ss_pred eCCcHHHHHHHHHH
Confidence 99999999987543
No 102
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=90.06 E-value=0.51 Score=56.78 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=72.2
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchh
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~-----g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~ 86 (864)
.+|+++|||+.+++. +.+|+|+++.+. |+- -.+.-=.-|.|-.|.|-+ +|+.+.||.+++
T Consensus 4 ~~i~vtidg~~~~v~---~G~tiL~a~~~~-gI~iP~iCy~~~l~pi~sCd~ClVEi----------dG~l~rsCsT~v- 68 (978)
T COG3383 4 KMITVTIDGRSIEVE---EGTTILRAANRN-GIEIPHICYHESLGPIGSCDTCLVEI----------DGKLVRSCSTPV- 68 (978)
T ss_pred eeEEEEECCeEEecC---CChHHHHHHHhc-CCcccceeccCCCCcccccceEEEEe----------cCceeccccccc-
Confidence 469999999998864 699999999753 443 333334578999999999 799999999996
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 002932 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (864)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (864)
-+|..|.|-.-.-+ +.-..+-+++...|-.-|--|--+
T Consensus 69 -~dGm~v~t~s~rvk--~~r~~~md~~l~nH~LyC~vCd~n 106 (978)
T COG3383 69 -EDGMVVRTNSERVK--EARREAMDRILSNHPLYCTVCDNN 106 (978)
T ss_pred -cCCcEEecccHHHH--HHHHHHHHHHHhcCCcCccccCCC
Confidence 47899988443321 111234456788899999888776
No 103
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=89.59 E-value=0.84 Score=51.65 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHHHHHhhh
Q 002932 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (864)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (864)
++|+.++++.... .+-..++.+|||.... .......+||++++..+..+..++..++++|++++.+|.+.+.+.-.
T Consensus 4 ~~ev~~~v~~A~~-~~~~v~~~GgGt~~~~--g~~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~- 79 (352)
T PRK11282 4 SAALLERVRQAAA-DGTPLRIRGGGSKDFY--GRALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQ- 79 (352)
T ss_pred HHHHHHHHHHHHH-CCCeEEEECCCCCCCC--CCCCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCC-
Confidence 4455554442211 2345888899985321 11113458999987666556667789999999999999998765310
Q ss_pred hhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 002932 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (864)
Q Consensus 329 ~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 367 (864)
.+|. --+.....+||||+|++...
T Consensus 80 -------~lp~--------~p~~~~~~~TIGG~iatg~~ 103 (352)
T PRK11282 80 -------MLPF--------EPPHFGGGATLGGMVAAGLS 103 (352)
T ss_pred -------eeCC--------CCCCcCCCcEehhHHhcCCC
Confidence 1110 01112335899999997654
No 104
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=85.58 E-value=1.4 Score=50.75 Aligned_cols=101 Identities=20% Similarity=0.372 Sum_probs=75.2
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeeccccc
Q 002932 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLT 83 (864)
Q Consensus 10 ~~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~ 83 (864)
...+|..+|+|+.+.| +|.+|+|..-- ..|..=.+ -|- -|.|--|.|.|.+. -++|.||-|
T Consensus 29 ~~~~ievfvd~~~v~v---~pg~tvlqac~-~~gv~ipr-fcyh~rlsvagncrmclveveks--------pkpva~cam 95 (708)
T KOG2282|consen 29 SPNKIEVFVDDQSVMV---EPGTTVLQACA-KVGVDIPR-FCYHERLSVAGNCRMCLVEVEKS--------PKPVAACAM 95 (708)
T ss_pred CccceEEEECCeeEee---CCCcHHHHHHH-HhCCCcch-hhhhhhhhhccceeEEEEEeccC--------CCcchhhcc
Confidence 3578999999988775 58999998763 23433222 243 48999999999543 579999999
Q ss_pred chhhccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 002932 84 LLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (864)
Q Consensus 84 p~~~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (864)
|+ +.|+.|.|=-.+.+ ..-.-+-+-|.-+|-.-|.-|.-|
T Consensus 96 pv--m~g~~iktns~~~k--karegvmefll~nhpldcpicdqg 135 (708)
T KOG2282|consen 96 PV--MKGWKIKTNSDKSK--KAREGVMEFLLMNHPLDCPICDQG 135 (708)
T ss_pred cc--cCCceeecCchHHH--HHHHHHHHHHHhCCCCCCCccCCC
Confidence 95 68999998666543 122347788889999999999877
No 105
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=82.89 E-value=3 Score=53.29 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=54.1
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCChHHHHHHH
Q 002932 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPFNIVGA 854 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~~~~~~aA 854 (864)
+++..+......||.++|+++++.. ..+...+|+.||+|.++|+|... .-+|.||++.+.. ...++-
T Consensus 662 ~~~~~a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~--~G~Av~ 739 (956)
T PRK09800 662 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCF--SGNAAR 739 (956)
T ss_pred CCCceEEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHH--HHHHHH
Confidence 4566777778888999999998754 45678889999999999999854 4578888887642 233344
Q ss_pred HHHHHcC
Q 002932 855 TIELLTV 861 (864)
Q Consensus 855 laA~~t~ 861 (864)
.||.+++
T Consensus 740 ~Aa~~l~ 746 (956)
T PRK09800 740 LAAENLR 746 (956)
T ss_pred HHHHHHH
Confidence 4555443
No 106
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=82.32 E-value=2.4 Score=54.12 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=54.2
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCChHHHHHHH
Q 002932 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPFNIVGA 854 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~~~~~~aA 854 (864)
+++..+....+.||.++|+++++.. ..+...+|+.||+|.++|+|+.. .-+|.||++.+. ....++-
T Consensus 658 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~--~~G~Av~ 735 (951)
T TIGR03313 658 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTC--FSGNAAK 735 (951)
T ss_pred CCCccEEEEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHH--HHHHHHH
Confidence 4567778888888999999999854 45778889999999999999864 457888888763 2233343
Q ss_pred HHHHHcC
Q 002932 855 TIELLTV 861 (864)
Q Consensus 855 laA~~t~ 861 (864)
.||.+++
T Consensus 736 ~Aa~~l~ 742 (951)
T TIGR03313 736 RAAENLR 742 (951)
T ss_pred HHHHHHH
Confidence 4555443
No 107
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=81.19 E-value=2.4 Score=53.04 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred CeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCChHHHHHHHHHH
Q 002932 789 QTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPFNIVGATIE 857 (864)
Q Consensus 789 ~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~~~~~~aAlaA 857 (864)
..+.+..+.||.++|+++++.. ..+...+|+.||+|.++|+|... +-+|.||++.+. ....++-.||
T Consensus 476 ~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~--~~G~Av~~Aa 553 (770)
T TIGR02416 476 DSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTP--VAGAATALAA 553 (770)
T ss_pred ceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHH--HHHHHHHHHH
Confidence 4577778888999999998654 34667889999999999999854 457888888763 2333444455
Q ss_pred HHcC
Q 002932 858 LLTV 861 (864)
Q Consensus 858 ~~t~ 861 (864)
.+++
T Consensus 554 ~~l~ 557 (770)
T TIGR02416 554 RKIK 557 (770)
T ss_pred HHHH
Confidence 5543
No 108
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=81.06 E-value=3.2 Score=51.99 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCCCCeEEEEECCCCcEEEEeCCC----Ch-HHHHHHHHHHhCCCCCCEEEEe-------CCcCCCCCCCCCC
Q 002932 785 YMETQTALAVPDEDNCLVVYSSIQ----CP-ESAHATIARCLGIPEHNVRVIT-------RRVGGAFGGKAIK 845 (864)
Q Consensus 785 ~mEp~~a~A~~~~dg~l~V~~stQ----~p-~~~r~~vA~~Lglp~~kV~V~~-------~~~GGgFGgK~~~ 845 (864)
.++..++....+.||.++|++++. .. ..+...+|+.||+|.++|+|+. ++-+|.||++.+.
T Consensus 457 ~~~~~~a~v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~ 529 (759)
T PRK09970 457 GLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSY 529 (759)
T ss_pred CCCcceEEEEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHH
Confidence 366778888888889999999984 33 3456788999999999999983 4667889888764
No 109
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=79.04 E-value=3.2 Score=51.94 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCC
Q 002932 787 ETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIK 845 (864)
Q Consensus 787 Ep~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~ 845 (864)
.+..+....++||.++|+++++.. ..+...+|+.||+|+++|+|.. +..+|.+|++.+.
T Consensus 446 ~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~ 515 (758)
T TIGR02965 446 NQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSD 515 (758)
T ss_pred CccceEEEEeCCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHH
Confidence 345667777778899999998653 3456778999999999999984 4567778888653
No 110
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=78.77 E-value=3.9 Score=51.02 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeCC------cCCCCCCCCCCChHHHHHHH
Q 002932 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAIKAMPFNIVGA 854 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------~GGgFGgK~~~~~~~~~~aA 854 (864)
..+.++......||.++|++++... ..++..+|+.||+|.++|+|.... -+|.+|++.+. ....++-
T Consensus 442 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~--~~G~Av~ 519 (746)
T TIGR03194 442 EPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF--MVGNAAI 519 (746)
T ss_pred CCCceEEEEEcCCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHH--HHHHHHH
Confidence 3456777778888999999887544 346788899999999999998654 57778877653 2333344
Q ss_pred HHHHHc
Q 002932 855 TIELLT 860 (864)
Q Consensus 855 laA~~t 860 (864)
.||.++
T Consensus 520 ~Aa~~l 525 (746)
T TIGR03194 520 DAAEEL 525 (746)
T ss_pred HHHHHH
Confidence 455544
No 111
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=72.79 E-value=6 Score=50.13 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=50.2
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCChHHHHHHHHH
Q 002932 788 TQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPFNIVGATI 856 (864)
Q Consensus 788 p~~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~~~~~~aAla 856 (864)
+..++.... ||.++|+++++.. ..+...+|+.||+|+++|+|.. ++-+|.+|++.+. ....++-.|
T Consensus 594 ~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~--~~G~Av~~A 670 (848)
T TIGR03311 594 TGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSL--FTGEATRRA 670 (848)
T ss_pred cceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHH--HHHHHHHHH
Confidence 445566665 7899999998654 2356778899999999999985 4467778888753 233344456
Q ss_pred HHHcCC
Q 002932 857 ELLTVY 862 (864)
Q Consensus 857 A~~t~~ 862 (864)
|.++++
T Consensus 671 a~~l~~ 676 (848)
T TIGR03311 671 AAKLKE 676 (848)
T ss_pred HHHHHH
Confidence 666543
No 112
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=72.50 E-value=5.2 Score=53.09 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=52.5
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCChH-----HHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCChHHHHHHH
Q 002932 786 METQTALAVPDEDNCLVVYSSIQCPE-----SAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPFNIVGA 854 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p~-----~~r~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~~~~~~aA 854 (864)
+...++++....||.++|+.+++..- .+...+|+.||||.++|+|... +.+|.+|++.+. ....++-
T Consensus 1015 ~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~--~~G~Av~ 1092 (1330)
T TIGR02969 1015 MGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVAD--LNGLAVK 1092 (1330)
T ss_pred CCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHH--HHHHHHH
Confidence 44567788888889999999975442 3567789999999999999854 447888888753 2333344
Q ss_pred HHHHHcC
Q 002932 855 TIELLTV 861 (864)
Q Consensus 855 laA~~t~ 861 (864)
.||.+++
T Consensus 1093 ~A~~~l~ 1099 (1330)
T TIGR02969 1093 DACQTLL 1099 (1330)
T ss_pred HHHHHHH
Confidence 4555544
No 113
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=70.89 E-value=2.6 Score=43.45 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=35.1
Q ss_pred CCCcHHHHHh---hcc-CCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 002932 30 PSTTLLEFLR---YHT-RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (864)
Q Consensus 30 ~~~~Ll~~LR---~~~-~l~g~K~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~p~~~ 87 (864)
=..++||.|- ++. .---.+.+|.||.||+|..-+ +|..-.+|+..+-+
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI----------~G~NtLACi~kId~ 126 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI----------NGTNTLACICKIDQ 126 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhhccccccceecc----------CCCceeEEEEeecc
Confidence 4567888873 222 223468999999999999988 57777889877544
No 114
>PLN02906 xanthine dehydrogenase
Probab=69.86 E-value=6.7 Score=52.03 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=52.7
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChH-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCChHHHHHHH
Q 002932 786 METQTALAVPDEDNCLVVYSSIQ----CPE-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPFNIVGA 854 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~-~~r~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~~~~~~aA 854 (864)
+.+..+....+.||.++|+.+++ ..+ .+...+|+.||+|.++|+|.. +..+|.+|++.+. ....++-
T Consensus 1010 ~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~--~~G~Av~ 1087 (1319)
T PLN02906 1010 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSD--MYGAAVL 1087 (1319)
T ss_pred CCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhH--hHHHHHH
Confidence 45567778888788999999774 333 355777899999999999985 4567888888764 2333444
Q ss_pred HHHHHcC
Q 002932 855 TIELLTV 861 (864)
Q Consensus 855 laA~~t~ 861 (864)
.||.+++
T Consensus 1088 ~Aa~~l~ 1094 (1319)
T PLN02906 1088 DACEQIK 1094 (1319)
T ss_pred HHHHHHH
Confidence 4665554
No 115
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=68.58 E-value=8.9 Score=48.09 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=47.5
Q ss_pred eEEEEECCCCc--EEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCChHHHHHHHHH
Q 002932 790 TALAVPDEDNC--LVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPFNIVGATI 856 (864)
Q Consensus 790 ~a~A~~~~dg~--l~V~~stQ~p----~-~~r~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~~~~~~aAla 856 (864)
.+.+..+.||. ++|+++++.. . .+...+|+.||+|.++|+|.. +.-+|.+|++.+.. ...++-.|
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~--~G~Av~~A 544 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSM--SGGAIQGA 544 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHh--HHHHHHHH
Confidence 56777777884 8898776543 2 355778999999999999984 45678888887642 23333345
Q ss_pred HHHc
Q 002932 857 ELLT 860 (864)
Q Consensus 857 A~~t 860 (864)
|.++
T Consensus 545 a~~l 548 (768)
T TIGR03196 545 CAAF 548 (768)
T ss_pred HHHH
Confidence 4443
No 116
>PRK07440 hypothetical protein; Provisional
Probab=68.35 E-value=6.4 Score=33.80 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=24.6
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
+.+|.++|||+++++. ..+||.++|++ +++.
T Consensus 2 ~~~m~i~vNG~~~~~~---~~~tl~~lL~~-l~~~ 32 (70)
T PRK07440 2 SNPITLQVNGETRTCS---SGTSLPDLLQQ-LGFN 32 (70)
T ss_pred CCceEEEECCEEEEcC---CCCCHHHHHHH-cCCC
Confidence 4579999999998875 47899999974 5653
No 117
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=61.70 E-value=11 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCCceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 7 HGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 7 ~~~~~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
-++..++|.++|||+.+++. ...||.++|.. +++.
T Consensus 12 ~~~~~~~m~I~VNG~~~~~~---~~~tl~~LL~~-l~~~ 46 (84)
T PRK06083 12 EGAAMVLITISINDQSIQVD---ISSSLAQIIAQ-LSLP 46 (84)
T ss_pred cCCCCceEEEEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 35666789999999999975 47899999974 4553
No 118
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=60.96 E-value=3.5 Score=44.11 Aligned_cols=16 Identities=50% Similarity=1.186 Sum_probs=14.6
Q ss_pred ccCCCCCCCCccEEEE
Q 002932 48 KLGCGEGGCGACVVLL 63 (864)
Q Consensus 48 K~gC~~G~CGaCtV~~ 63 (864)
..+|+.|.||+|.|.+
T Consensus 214 ~m~cg~G~C~~C~~~~ 229 (250)
T PRK00054 214 RMKCGIGACGACVCDT 229 (250)
T ss_pred cccCcCcccCcCCccc
Confidence 5689999999999987
No 119
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=60.40 E-value=20 Score=46.36 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhc---cCCccccc------CCCCCCCCccEEEEeecCCCcccCCceeeccc
Q 002932 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYH---TRFKSVKL------GCGEGGCGACVVLLSKYNPELDQLEDFTISSC 81 (864)
Q Consensus 11 ~~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~---~~l~g~K~------gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sC 81 (864)
+..|+|++||++++. .+..||...|--. .-=++.|. =|.-|.|--|.|.|+.-. .....+.+|
T Consensus 10 ~~~~~~~~dg~~~~~---~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~-----~~~~~~~ac 81 (985)
T TIGR01372 10 SRPLRFTFDGKSYSG---FAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGA-----QREPNTRAT 81 (985)
T ss_pred CCeEEEEECCEEeec---CCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCc-----CCCCCccce
Confidence 358999999999885 5789999888432 11134444 388777899999993100 001347899
Q ss_pred ccchhhccCceeEEecCCCC
Q 002932 82 LTLLCSVNGCLITTSEGLGN 101 (864)
Q Consensus 82 l~p~~~~~g~~i~TvEgl~~ 101 (864)
++++. +|..|.|.-+..+
T Consensus 82 ~~~~~--~gm~~~~~~~~~~ 99 (985)
T TIGR01372 82 TQELY--DGLVATSQNRWPS 99 (985)
T ss_pred eEEcc--cCCEEecccCCCc
Confidence 99964 7999999877643
No 120
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=57.76 E-value=5.9 Score=42.06 Aligned_cols=18 Identities=39% Similarity=0.899 Sum_probs=15.6
Q ss_pred ccccCCCCCCCCccEEEE
Q 002932 46 SVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 46 g~K~gC~~G~CGaCtV~~ 63 (864)
..+-+|+.|.||+|+|-.
T Consensus 211 ~~~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 211 NSPMCCGIGICGACTIET 228 (243)
T ss_pred CccccCccccccceEEEe
Confidence 356789999999999976
No 121
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=57.33 E-value=19 Score=41.53 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=50.8
Q ss_pred EEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccccHHHHHHHH
Q 002932 243 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 322 (864)
Q Consensus 243 ~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l 322 (864)
+-.|+|.+|+.++.+.... .+...|.|. -++.+-+.......+|+++.+.--..+.-+--.|.+=|++|+.||.+.+
T Consensus 53 v~yP~teaeL~~lVa~A~~-a~~kirvVg--~gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~ 129 (518)
T KOG4730|consen 53 VNYPKTEAELVELVAAATE-AGKKIRVVG--SGHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEEL 129 (518)
T ss_pred cCCCCCHHHHHHHHHHHHH-cCceEEEec--ccCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHH
Confidence 4459999999999885422 234566655 3333322222334788887764443444445678889999999999987
Q ss_pred HH
Q 002932 323 KE 324 (864)
Q Consensus 323 ~~ 324 (864)
.+
T Consensus 130 ~~ 131 (518)
T KOG4730|consen 130 AK 131 (518)
T ss_pred Hh
Confidence 65
No 122
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=56.35 E-value=34 Score=41.17 Aligned_cols=57 Identities=28% Similarity=0.404 Sum_probs=38.3
Q ss_pred CCeEEEEECCCCcEEEEeCC----CChH-HHHHHHHHHhCCCCCCEEEEeCC------cCCCCCCCCC
Q 002932 788 TQTALAVPDEDNCLVVYSSI----QCPE-SAHATIARCLGIPEHNVRVITRR------VGGAFGGKAI 844 (864)
Q Consensus 788 p~~a~A~~~~dg~l~V~~st----Q~p~-~~r~~vA~~Lglp~~kV~V~~~~------~GGgFGgK~~ 844 (864)
..++....+.||.++|+++. |... .+...+|+.||+|+++|+|.... -+|.+|++.+
T Consensus 319 ~~~a~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t 386 (547)
T PF02738_consen 319 QSSARVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRST 386 (547)
T ss_dssp EEEEEEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHH
T ss_pred CCcEEEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhh
Confidence 34677777888999999886 5554 45678899999999999998554 5567777764
No 123
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=55.97 E-value=60 Score=28.70 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred CceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002932 470 GIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLL 515 (864)
Q Consensus 470 ~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l 515 (864)
+|+|++++|.=-.+... . ..+.|+.|.|.+++.+.+.++++.+
T Consensus 26 ~G~I~~i~i~gDf~~~~-~--i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 26 NGIIKDIKIYGDFFGPE-D--IEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TTEEEEEEEEECBS-CC-C--HHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCch-H--HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 58999999975555544 4 7899999999999999999998876
No 124
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=52.55 E-value=8.9 Score=29.30 Aligned_cols=17 Identities=47% Similarity=1.288 Sum_probs=12.8
Q ss_pred ccCCCCCCCCccEEEEe
Q 002932 48 KLGCGEGGCGACVVLLS 64 (864)
Q Consensus 48 K~gC~~G~CGaCtV~~~ 64 (864)
+-+|+-|.|++|.|-..
T Consensus 3 ~M~CG~G~C~~C~v~~~ 19 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVK 19 (40)
T ss_dssp --SSSSSSS-TTEEECS
T ss_pred cccCCCcEeCCcEeeee
Confidence 56899999999999883
No 125
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=51.07 E-value=19 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=25.4
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g 46 (864)
|+|++.+||+++++. ..+|+.|+|++ +++..
T Consensus 1 ~~m~i~~ng~~~e~~---~~~tv~dLL~~-l~~~~ 31 (68)
T COG2104 1 MPMTIQLNGKEVEIA---EGTTVADLLAQ-LGLNP 31 (68)
T ss_pred CcEEEEECCEEEEcC---CCCcHHHHHHH-hCCCC
Confidence 578999999999975 34999999975 57765
No 126
>PLN00192 aldehyde oxidase
Probab=49.83 E-value=35 Score=45.55 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=50.3
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCC----hH-HHHHHHHHHhCC--------CCCCEEEEeC------CcCCCCCCCCCCC
Q 002932 786 METQTALAVPDEDNCLVVYSSIQC----PE-SAHATIARCLGI--------PEHNVRVITR------RVGGAFGGKAIKA 846 (864)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~----p~-~~r~~vA~~Lgl--------p~~kV~V~~~------~~GGgFGgK~~~~ 846 (864)
+-+..+++....||.++|+.+.+. .+ .+...+|+.||+ |.++|+|... ..+|.+|++.+.
T Consensus 1028 ~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~- 1106 (1344)
T PLN00192 1028 LRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSE- 1106 (1344)
T ss_pred ccCCceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHH-
Confidence 334577777777889999998744 33 355777899995 9999999854 456777777653
Q ss_pred hHHHHHHHHHHHHcC
Q 002932 847 MPFNIVGATIELLTV 861 (864)
Q Consensus 847 ~~~~~~aAlaA~~t~ 861 (864)
....++-.||.++.
T Consensus 1107 -~~G~Av~~Ac~~l~ 1120 (1344)
T PLN00192 1107 -SSCEAVRLCCVILV 1120 (1344)
T ss_pred -HHHHHHHHHHHHHH
Confidence 23334444665554
No 127
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=48.16 E-value=7.3 Score=42.10 Aligned_cols=18 Identities=39% Similarity=0.888 Sum_probs=15.8
Q ss_pred cccccCCCCCCCCccEEE
Q 002932 45 KSVKLGCGEGGCGACVVL 62 (864)
Q Consensus 45 ~g~K~gC~~G~CGaCtV~ 62 (864)
-..+-.|+.|.||+|.|-
T Consensus 223 ~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 223 YERKMCCGVGKCGHCKID 240 (261)
T ss_pred eccceeccCcCCCCcccC
Confidence 467899999999999984
No 128
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=46.96 E-value=20 Score=30.19 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.5
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
++++|||+++++. +.+||.++|.. +++.
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~ll~~-l~~~ 28 (65)
T PRK05863 1 MIVVVNEEQVEVD---EQTTVAALLDS-LGFP 28 (65)
T ss_pred CEEEECCEEEEcC---CCCcHHHHHHH-cCCC
Confidence 4789999999875 47899999975 5664
No 129
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=45.92 E-value=34 Score=37.09 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=49.9
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeecccCceeeeCCCCccccceEecCCcEEecccc
Q 002932 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (864)
Q Consensus 235 ~~~~~-~~~~~~P~tl~eal~ll~~~~~~~~~~a~lvaGgTdl~v~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (864)
+.+.+ ..-|+.|.+.+ + . -...++.+|+-+.+-... ...+| + ..++..++.+++.|++||++
T Consensus 13 ~~iGG~A~~~~~~~~~~-l----~-------~p~~vlG~GSNlLv~D~g--~~~vv-~--~~~~~~~~~~~~~v~~~AG~ 75 (257)
T PRK13904 13 VKIGPPLEVLVLEEIDD-F----S-------QDGQIIGGANNLLISPNP--KNLAI-L--GKNFDYIKIDGECLEIGGAT 75 (257)
T ss_pred eeECceEEEEEEechhh-h----C-------CCeEEEeceeEEEEecCC--ccEEE-E--ccCcCeEEEeCCEEEEEcCC
Confidence 44555 34466677776 4 2 357788888888664432 34555 2 23467777788899999999
Q ss_pred cHHHHHHHHHH
Q 002932 314 TISKAIEALKE 324 (864)
Q Consensus 314 Tl~~l~~~l~~ 324 (864)
.+.+|.....+
T Consensus 76 ~l~~l~~~~~~ 86 (257)
T PRK13904 76 KSGKIFNYAKK 86 (257)
T ss_pred cHHHHHHHHHH
Confidence 99999987543
No 130
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=44.76 E-value=22 Score=29.69 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g 46 (864)
++++|||+.+++. ..+||.++|.. +++..
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~lL~~-l~~~~ 29 (66)
T PRK05659 1 MNIQLNGEPRELP---DGESVAALLAR-EGLAG 29 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHh-cCCCC
Confidence 4789999998865 47899999964 56653
No 131
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=44.76 E-value=23 Score=29.87 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.0
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
+.++|||+++++. ..+||.++|.. +++.
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~-l~~~ 28 (66)
T PRK08053 1 MQILFNDQPMQCA---AGQTVHELLEQ-LNQL 28 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 4789999999975 46899999964 5554
No 132
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=41.24 E-value=10 Score=41.09 Aligned_cols=17 Identities=41% Similarity=0.982 Sum_probs=14.9
Q ss_pred ccccCCCCCCCCccEEE
Q 002932 46 SVKLGCGEGGCGACVVL 62 (864)
Q Consensus 46 g~K~gC~~G~CGaCtV~ 62 (864)
.++-.|++|.||+|+|.
T Consensus 226 ~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 226 ERKMCCGVGKCGHCKID 242 (263)
T ss_pred cceeEccCcccCCcccC
Confidence 46789999999999985
No 133
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=37.47 E-value=37 Score=37.02 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=36.9
Q ss_pred eEEEEEECCE-EEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEE
Q 002932 12 HSVVFAVNGE-KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLL 63 (864)
Q Consensus 12 ~~i~~~lNg~-~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~-~G~CGaCtV~~ 63 (864)
..+++.|||- ..+.+ +++..+||..|-.. |+. +-..|+ .|.||-|.|.|
T Consensus 35 gd~ti~IN~d~e~~~t-~~aG~kLL~~L~~~-gif-i~SaCGGggsC~QCkv~v 85 (410)
T COG2871 35 GDITIKINGDPEKTKT-VPAGGKLLGALASS-GIF-ISSACGGGGSCGQCKVRV 85 (410)
T ss_pred CceEEEeCCChhhcee-cCCchhHHHHHHhC-Ccc-cccCCCCCccccccEEEE
Confidence 4689999983 33444 68899999999765 554 345677 67899999999
No 134
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=35.54 E-value=40 Score=28.60 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
++++|||+.+++.. +..||.++|.. +++.
T Consensus 1 m~I~vNG~~~~~~~--~~~tv~~lL~~-l~~~ 29 (67)
T PRK07696 1 MNLKINGNQIEVPE--SVKTVAELLTH-LELD 29 (67)
T ss_pred CEEEECCEEEEcCC--CcccHHHHHHH-cCCC
Confidence 46899999998752 23689999974 5664
No 135
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=35.54 E-value=15 Score=39.49 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=15.6
Q ss_pred ccccCCCCCCCCccEEE
Q 002932 46 SVKLGCGEGGCGACVVL 62 (864)
Q Consensus 46 g~K~gC~~G~CGaCtV~ 62 (864)
.++..|++|.||+|.|.
T Consensus 224 ~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 224 ERRMKCGVGKCGHCQIG 240 (253)
T ss_pred hhccccCCccccCcccC
Confidence 67889999999999996
No 136
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=35.48 E-value=18 Score=38.23 Aligned_cols=16 Identities=38% Similarity=0.928 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccEEEE
Q 002932 48 KLGCGEGGCGACVVLL 63 (864)
Q Consensus 48 K~gC~~G~CGaCtV~~ 63 (864)
...|+.|.||+|.|-.
T Consensus 200 f~~cg~g~C~~C~v~~ 215 (233)
T cd06220 200 YMKCGIGICGSCCIDP 215 (233)
T ss_pred cccCcCCCcCccEecc
Confidence 4699999999999987
No 137
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=34.80 E-value=38 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.2
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCC
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRF 44 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l 44 (864)
++++|||+.+++. +.+||.++|.. +++
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~-l~~ 27 (65)
T PRK06944 1 MDIQLNQQTLSLP---DGATVADALAA-YGA 27 (65)
T ss_pred CEEEECCEEEECC---CCCcHHHHHHh-hCC
Confidence 4689999998864 47899999964 555
No 138
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=34.01 E-value=78 Score=26.38 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 15 ~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
.++|||+.+++. ..+|+.++|.. +++.
T Consensus 1 ~i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 27 (65)
T cd00565 1 KITVNGEPREVE---EGATLAELLEE-LGLD 27 (65)
T ss_pred CEEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 378999999975 47899999964 5654
No 139
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=33.60 E-value=24 Score=37.69 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHHHHhhccCCcc-----cccCCCCCCCCccEEEE
Q 002932 34 LLEFLRYHTRFKS-----VKLGCGEGGCGACVVLL 63 (864)
Q Consensus 34 Ll~~LR~~~~l~g-----~K~gC~~G~CGaCtV~~ 63 (864)
+.+.|++ .|+.. .+-+|+.|.||+|+|..
T Consensus 195 ~~~~l~~-~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 195 VSELTRP-YGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHH-cCCCEEEEecccccCccceeeeEEEEe
Confidence 3455654 34433 57799999999999986
No 140
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=32.08 E-value=61 Score=27.65 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred eEEEEEECCE--EEEEecCCCCCcHHHHHhhccCCc
Q 002932 12 HSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 12 ~~i~~~lNg~--~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
.+|++.|||+ +.+++ +++++|+.++|+ ++++.
T Consensus 3 ~mm~v~vng~~~~~~~~-~~~~~tv~~ll~-~l~~~ 36 (70)
T PRK08364 3 LMIRVKVIGRGIEKEIE-WRKGMKVADILR-AVGFN 36 (70)
T ss_pred eEEEEEEeccccceEEE-cCCCCcHHHHHH-HcCCC
Confidence 3589999999 44554 567899999996 45664
No 141
>PRK05802 hypothetical protein; Provisional
Probab=32.01 E-value=29 Score=38.81 Aligned_cols=18 Identities=56% Similarity=1.147 Sum_probs=16.1
Q ss_pred ccccCCCCCCCCccEEEE
Q 002932 46 SVKLGCGEGGCGACVVLL 63 (864)
Q Consensus 46 g~K~gC~~G~CGaCtV~~ 63 (864)
-.+-.||.|.||+|+|-.
T Consensus 287 e~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 287 NAKMCCGEGICGACTVRY 304 (320)
T ss_pred CCeeeCcCccCCeeEEEE
Confidence 358899999999999987
No 142
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=30.05 E-value=1.1e+02 Score=30.44 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=40.9
Q ss_pred CCceeEEEEEE-CCEEEEEecCCCCCcHHHHHhh-ccCCcccccCCC-CCCCCccEEEEe
Q 002932 8 GGTRHSVVFAV-NGEKFEVSSVDPSTTLLEFLRY-HTRFKSVKLGCG-EGGCGACVVLLS 64 (864)
Q Consensus 8 ~~~~~~i~~~l-Ng~~~~~~~~~~~~~Ll~~LR~-~~~l~g~K~gC~-~G~CGaCtV~~~ 64 (864)
.++..+|+|.. ||+++.+. ..-.++||+...+ .+.|-| .|. .=.|-.|-|.|.
T Consensus 40 ~~e~i~Itfv~~dG~~~~i~-g~vGdtlLd~ah~n~idleG---ACEgslACSTCHViv~ 95 (159)
T KOG3309|consen 40 KVEDIKITFVDPDGEEIKIK-GKVGDTLLDAAHENNLDLEG---ACEGSLACSTCHVIVD 95 (159)
T ss_pred CCceEEEEEECCCCCEEEee-eecchHHHHHHHHcCCCccc---cccccccccceEEEEc
Confidence 34446677766 68999998 5889999999965 577777 676 667888999883
No 143
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=29.28 E-value=55 Score=27.32 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 14 i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
|+++|||+.++++ ..||.++|.. +++.
T Consensus 1 m~i~~Ng~~~~~~----~~tl~~Ll~~-l~~~ 27 (65)
T PRK06488 1 MKLFVNGETLQTE----ATTLALLLAE-LDYE 27 (65)
T ss_pred CEEEECCeEEEcC----cCcHHHHHHH-cCCC
Confidence 4789999999973 3589999964 4543
No 144
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.78 E-value=65 Score=37.87 Aligned_cols=49 Identities=35% Similarity=0.608 Sum_probs=38.5
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEeecC
Q 002932 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKYN 67 (864)
Q Consensus 13 ~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g~K~gC~-~G~CGaCtV~~~~~~ 67 (864)
.++|.=-||+.+ +..+|.||.-|+ +| -+++.-|+ .|-||-|.|.|.+.+
T Consensus 3 ~v~f~psgkr~~----~~g~~il~aar~-~g-v~i~s~cggk~~cgkc~v~v~~g~ 52 (614)
T COG3894 3 LVTFMPSGKRGE----DEGTTILDAARR-LG-VYIRSVCGGKGTCGKCQVVVQEGN 52 (614)
T ss_pred eeEeecCCCcCC----CCCchHHHHHHh-hC-ceEeeecCCCccccceEEEEEeCC
Confidence 367888898876 458899999986 45 45777787 899999999996543
No 145
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=24.35 E-value=94 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=26.6
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 002932 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (864)
Q Consensus 12 ~~i~~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~g 46 (864)
+.|++..+|+.++++ ++++.|+.++=+.-..++|
T Consensus 1 ~~i~vk~~g~~~~v~-v~~~~Tv~~lK~~i~~~tg 34 (74)
T cd01813 1 VPVIVKWGGQEYSVT-TLSEDTVLDLKQFIKTLTG 34 (74)
T ss_pred CEEEEEECCEEEEEE-ECCCCCHHHHHHHHHHHHC
Confidence 468899999999997 8999999987654444444
No 146
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=24.05 E-value=41 Score=35.90 Aligned_cols=17 Identities=41% Similarity=1.001 Sum_probs=14.7
Q ss_pred ccCCCCCCCCccEEEEe
Q 002932 48 KLGCGEGGCGACVVLLS 64 (864)
Q Consensus 48 K~gC~~G~CGaCtV~~~ 64 (864)
+.-|++|.||+|.+...
T Consensus 213 ~~~~~~g~c~~c~~~~~ 229 (246)
T cd06218 213 RMACGIGACLGCVVKTK 229 (246)
T ss_pred cccCccceecccEEEee
Confidence 45699999999999984
No 147
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=23.11 E-value=1.3e+02 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=27.8
Q ss_pred eEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEe
Q 002932 790 TALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT 832 (864)
Q Consensus 790 ~a~A~~~~dg~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~ 832 (864)
..+.-+.+++.|.|....+-- ..+...+|+.||+|.++|.+..
T Consensus 17 ~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 17 NAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp -EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred cccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 345444443567777766533 4688999999999999999975
No 148
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.00 E-value=72 Score=26.55 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.4
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 002932 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (864)
Q Consensus 16 ~~lNg~~~~~~~~~~~~~Ll~~LR~~~~l~ 45 (864)
++|||+.+++. ..+||.++|.. +++.
T Consensus 1 i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 26 (64)
T TIGR01683 1 ITVNGEPVEVE---DGLTLAALLES-LGLD 26 (64)
T ss_pred CEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 47999999975 47899999974 5654
Done!