Query 002934
Match_columns 864
No_of_seqs 387 out of 1537
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 13:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 4E-125 8E-130 1060.0 28.8 687 22-860 37-739 (739)
2 KOG4442 Clathrin coat binding 100.0 9.4E-44 2E-48 404.4 14.4 189 615-847 64-257 (729)
3 KOG1080 Histone H3 (Lys4) meth 100.0 1.6E-30 3.5E-35 312.2 11.1 134 714-847 865-1002(1005)
4 KOG1082 Histone H3 (Lys9) meth 99.9 3.6E-28 7.8E-33 269.0 11.9 141 683-833 154-323 (364)
5 smart00317 SET SET (Su(var)3-9 99.9 1.1E-23 2.4E-28 191.0 11.8 113 717-829 2-116 (116)
6 KOG1083 Putative transcription 99.9 1.5E-24 3.2E-29 254.3 4.9 132 703-834 1165-1298(1306)
7 KOG1085 Predicted methyltransf 99.7 1.9E-18 4.1E-23 182.0 8.6 124 709-832 250-379 (392)
8 KOG1141 Predicted histone meth 99.7 3.5E-17 7.6E-22 188.9 8.8 73 776-848 1179-1260(1262)
9 COG2940 Proteins containing SE 99.6 1.1E-15 2.3E-20 175.4 2.7 131 704-834 321-453 (480)
10 PF00856 SET: SET domain; Int 99.5 3.2E-14 6.8E-19 134.0 5.6 105 726-830 1-162 (162)
11 KOG1081 Transcription factor N 98.9 3.1E-10 6.7E-15 130.2 2.0 115 702-832 301-417 (463)
12 KOG2589 Histone tail methylase 98.5 8.9E-08 1.9E-12 105.1 4.8 114 725-844 137-254 (453)
13 KOG2461 Transcription factor B 98.1 2.9E-06 6.3E-11 96.1 5.6 109 713-833 26-146 (396)
14 KOG1141 Predicted histone meth 97.7 1.2E-05 2.5E-10 95.4 1.2 56 702-757 786-841 (1262)
15 PF00249 Myb_DNA-binding: Myb- 92.7 0.16 3.5E-06 40.9 4.1 46 174-221 1-48 (48)
16 PF13921 Myb_DNA-bind_6: Myb-l 92.3 0.14 3E-06 42.8 3.2 43 177-222 1-45 (60)
17 smart00717 SANT SANT SWI3, AD 92.1 0.14 3E-06 39.6 2.9 46 175-222 2-48 (49)
18 smart00717 SANT SANT SWI3, AD 91.8 0.41 8.9E-06 36.9 5.2 43 498-542 2-45 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 91.6 0.43 9.3E-06 36.3 5.1 41 499-541 1-42 (45)
20 KOG4442 Clathrin coat binding 91.0 0.26 5.6E-06 59.4 4.9 36 623-658 82-120 (729)
21 smart00570 AWS associated with 90.9 0.093 2E-06 43.9 0.8 13 702-714 39-51 (51)
22 KOG1171 Metallothionein-like p 90.7 0.058 1.3E-06 61.7 -0.8 63 616-679 131-244 (406)
23 cd00167 SANT 'SWI3, ADA2, N-Co 88.5 0.43 9.4E-06 36.3 2.8 43 176-220 1-44 (45)
24 PF03638 TCR: Tesmin/TSO1-like 84.1 0.55 1.2E-05 37.9 1.4 30 652-682 3-32 (42)
25 PF09111 SLIDE: SLIDE; InterP 81.7 1.3 2.8E-05 43.1 3.1 50 173-222 48-111 (118)
26 KOG1337 N-methyltransferase [G 79.3 1.3 2.9E-05 51.8 2.8 40 789-831 239-278 (472)
27 PF05033 Pre-SET: Pre-SET moti 78.5 1 2.2E-05 41.6 1.2 37 615-651 45-103 (103)
28 PF00249 Myb_DNA-binding: Myb- 77.6 6.3 0.00014 31.7 5.4 43 498-541 2-45 (48)
29 smart00570 AWS associated with 77.1 0.89 1.9E-05 38.2 0.4 8 646-653 20-27 (51)
30 PF03638 TCR: Tesmin/TSO1-like 74.7 1.7 3.8E-05 35.1 1.4 37 615-652 2-40 (42)
31 PF13921 Myb_DNA-bind_6: Myb-l 71.0 8.7 0.00019 32.0 4.9 41 500-542 1-41 (60)
32 PF05033 Pre-SET: Pre-SET moti 69.5 3.7 7.9E-05 37.9 2.5 46 651-707 45-103 (103)
33 KOG2084 Predicted histone tail 67.0 6.9 0.00015 44.5 4.6 38 789-830 208-246 (482)
34 PLN03212 Transcription repress 63.4 8 0.00017 42.2 3.9 52 169-223 73-125 (249)
35 TIGR01557 myb_SHAQKYF myb-like 58.7 24 0.00051 30.3 5.2 44 498-542 4-52 (57)
36 KOG1082 Histone H3 (Lys9) meth 54.2 9.3 0.0002 43.5 2.7 42 613-654 104-171 (364)
37 PLN03091 hypothetical protein; 49.2 20 0.00044 42.0 4.4 53 168-223 61-114 (459)
38 PF14774 FAM177: FAM177 family 47.7 30 0.00065 34.2 4.7 66 143-211 18-97 (123)
39 COG5259 RSC8 RSC chromatin rem 44.3 20 0.00044 42.2 3.4 43 496-540 278-321 (531)
40 PLN03212 Transcription repress 43.9 21 0.00046 39.0 3.3 46 174-221 25-72 (249)
41 KOG1081 Transcription factor N 40.1 9.5 0.00021 45.1 -0.0 105 724-830 122-242 (463)
42 KOG3813 Uncharacterized conser 39.5 14 0.00031 43.8 1.3 21 616-636 307-328 (640)
43 KOG4167 Predicted DNA-binding 32.6 50 0.0011 41.0 4.3 40 498-539 620-659 (907)
44 PF14100 PmoA: Methane oxygena 32.4 46 0.001 36.6 3.7 102 715-831 143-252 (271)
45 PF00856 SET: SET domain; Int 28.9 32 0.00069 32.2 1.6 17 811-827 2-18 (162)
46 PRK09430 djlA Dna-J like membr 28.7 60 0.0013 35.7 3.9 49 177-225 146-229 (267)
47 PF08271 TF_Zn_Ribbon: TFIIB z 27.6 70 0.0015 25.4 3.1 33 144-177 7-43 (43)
48 PF08666 SAF: SAF domain; Int 26.8 36 0.00078 28.3 1.4 15 812-826 3-17 (63)
49 KOG1338 Uncharacterized conser 26.2 45 0.00098 38.9 2.4 44 785-834 217-263 (466)
50 KOG3813 Uncharacterized conser 23.0 37 0.0008 40.5 1.0 31 661-691 315-349 (640)
51 KOG0457 Histone acetyltransfer 22.8 1.8E+02 0.0039 34.4 6.4 40 497-538 72-112 (438)
52 TIGR02726 phenyl_P_delta pheny 22.8 65 0.0014 33.0 2.6 49 147-195 22-74 (169)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=3.8e-125 Score=1060.01 Aligned_cols=687 Identities=36% Similarity=0.571 Sum_probs=540.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccchhhhccCCCC----Cc---CCccccCCCC
Q 002934 22 DGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFG----NM---PLCKYSGFPQ 94 (864)
Q Consensus 22 ~~~~~L~~~i~~LKkqi~~eR~~~ik~k~e~N~~~l~~~~~~l~~~~~~~~r~~~~~~~~~----~~---~l~~~~g~~~ 94 (864)
+.++.+...+..+|+ ++..++.+++++-..++.+...+|+-+- +++.+ ........+ .| |++++||+..
T Consensus 37 ~~~e~i~~~~~E~k~-~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~--~~i~~~n~~~~v~~~~~~~~~q~nfmv~ 112 (739)
T KOG1079|consen 37 DRLEKIKILNCEWKK-RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQK--SPINELNAVAQVPIMYSWPPLQQNFMVE 112 (739)
T ss_pred HHHHHHHHHHHHHhh-hhcccccccccccccccccccccccccc-Ccccc--cchhhhcccccccccccCChhhhcceec
Confidence 456666666666666 7777888888888888888888888774 55552 222222222 22 9999999999
Q ss_pred CCCCCCcccccccccccccccccCCCCCCCceeEEeeccccccccccccccceeeEeCCCCeEEEecCCccccCCCcccc
Q 002934 95 GLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEEK 174 (864)
Q Consensus 95 ~~~d~d~~~~~~v~~~~~iklp~v~klPpYTtWifldrNqrMaedqsvvgrrriYYD~~g~EalicSdseee~~e~eeek 174 (864)
+..+.+++..-++. +..||+|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+||| ++++|||
T Consensus 113 ~~~~~~~ip~~~~~-v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e-~~~~~ek 188 (739)
T KOG1079|consen 113 DETVLHNIPYMGDE-VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEE-EVLEEEK 188 (739)
T ss_pred ccceeccccccccc-ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccc-cchhhhc
Confidence 99999988877754 67899999999999999999999999999999999999999 99999999 999999 8889999
Q ss_pred ccCCcccch-hhhhHhhhcCChHHHHHHHHHHhc--CCcHHHHHHHHHhHhhcCCCCCccccccccccccchhhh-hhHH
Q 002934 175 HEFSDGEDR-ILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKS-LSAA 250 (864)
Q Consensus 175 ~~f~~~ed~-~~~~~~~e~g~sd~v~~~l~~~~~--~~~sei~eRy~~L~~k~~~~~~~~~~~~~~~~~~~~~k~-l~~a 250 (864)
++|.+++|. ++|++.+.++++++||.+|+++|. ++++||+|||.+|+++..+...+...+.+++. +.+++. ++++
T Consensus 189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~id~-~~ae~~~r~~~ 267 (739)
T KOG1079|consen 189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPNIDG-SSAEPVQREQA 267 (739)
T ss_pred ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccCCCc-cccChHHHHhh
Confidence 999999999 899999999999999999999995 99999999999999986655555555444544 445555 9999
Q ss_pred hhcccccccccccccccCCcCcCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhccccccccCcCCCccccccccccccc
Q 002934 251 LDSFDNLFCRRCLLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCSNHCYLQSRAVQDTVEGSAGNISSIITNTEGTLL 330 (864)
Q Consensus 251 ldsFdnlFCRRClvfDC~lHgcsq~li~~~ekq~~~~~~~~d~~PCg~~Cyl~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 330 (864)
|||||||||||||+|||+||| +|.++||.++.-.|.++..+..|||+.||.++.+........ +.+
T Consensus 268 l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m~~---------~~~---- 333 (739)
T KOG1079|consen 268 LHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTMSA---------VVS---- 333 (739)
T ss_pred hcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhhhc---------ccc----
Confidence 999999999999999999999 999999999999999999999999999999986654331100 000
Q ss_pred cCCCCCCCCCCccccccccCcccccccccccccchhhhcCCCCCccchhhhhcccccccccccchhhHHHHHHHHhhhhc
Q 002934 331 HCNAEVPGAHSDIMAGERCNSKRVLPVTSEAVDSSEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEIEESLNKKQKKL 410 (864)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (864)
..+.+. + .++|+..
T Consensus 334 ----~~~p~~-----g---------------------------------------------------------~~~qk~~ 347 (739)
T KOG1079|consen 334 ----KCPPIR-----G---------------------------------------------------------DIRQKLV 347 (739)
T ss_pred ----cCCCCc-----c---------------------------------------------------------hhhhhhc
Confidence 000000 0 0112211
Q ss_pred cCccccccCCCCCCCCCCCCCCccccccccccccccccc--cccccccccccccccccccccCCccCCCCcccccCCCCC
Q 002934 411 LPLDVLTASSDGIPRPDTKSGHHVGAINDNELQMTSKNT--IKKSVSAKVVSHNNIEHNIMDGAKDVNKEPEMKQSFSKG 488 (864)
Q Consensus 411 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (864)
-.+++++. .+.. ..++....+...+..+.- .+.. ...++.........+.++......
T Consensus 348 ~~~~~~s~-------~~~~--~~e~~g~~~d~~v~~~~~~~~~~v---------~~~~~~~~s~~~~~c~~~~~~~~~-- 407 (739)
T KOG1079|consen 348 KASSMDSD-------DEHV--EEEDKGHDDDDGVPRGFGGSVNFV---------GEDDTSTHSSTNSICQNPVHGKKD-- 407 (739)
T ss_pred ccccCCcc-------hhhc--cccccCcccccccccccccccccc---------cCCcccccccccccccCcccccCC--
Confidence 11111110 0000 001100111111110000 0000 001111111112222222111110
Q ss_pred CCccccccCCCCcHHHHHHHHHhHhhcCCchHHHHHhhhCCCCcHHHHHHHHhhcCCCCCCCCCCCCccccccccccchh
Q 002934 489 ELPEGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDY 568 (864)
Q Consensus 489 ~~~~~~~~~~~W~~~E~~l~~k~v~ifG~N~C~iA~~ll~g~KTC~EV~~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (864)
...+|+++|+.||++|+.+||.|+|+|||+|+ +|||++||+||....... ++.... ..
T Consensus 408 -------~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~e~~~~--------~~~~~~----~~- 465 (739)
T KOG1079|consen 408 -------TNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQKEVLQG--------LYFDGR----FR- 465 (739)
T ss_pred -------cccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhcchhhc--------eecccc----cc-
Confidence 24689999999999999999999999999995 599999999998765311 111100 00
Q ss_pred hhhcCCCchhHHhhhhcccccccccCCCCCCcchhhcccCCccCCcCCcCCCCCCCC--CCCCcccCCCccccCCCCCCc
Q 002934 569 AEQEMPARPRLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMC--GKQCPCLHNGTCCEKYCGCSK 646 (864)
Q Consensus 569 ~~~e~~~r~r~~r~~~r~rklk~~~ks~~~p~~~kri~~~k~~~~~~y~PC~c~~~C--~~~C~C~~~g~~Ce~~CgC~~ 646 (864)
.....+.|++.+|+.|+.|++.+.|+++.|+..|. |+||+|+++| +.+|+|+.++++||++|+|+.
T Consensus 466 ~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~~------------~qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~ 533 (739)
T KOG1079|consen 466 VELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVWN------------YQPCDHPGPCNCGVGCPCIDNETFCEKFCYCSP 533 (739)
T ss_pred cccCcchhhHHHHhhhhHHHhhhcccccCCceeee------------cCcccCCCCCCCCCCCcccccCcchhhcccCCH
Confidence 01233456888999999999999999999877664 7777777555 689999999999999999999
Q ss_pred cccccccCcccCCCCccCCCcccccccCccCcccCcCcccCCCCCCCCCCCCCCCC-CCCchhhhhcccCcEEEEecCCC
Q 002934 647 SCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDG-QCGNMRLLLRQQQRILLAKSDVA 725 (864)
Q Consensus 647 ~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdPd~C~~C~~sCg~g~l~~p~~~~~~-~C~N~~lqrg~~~~l~V~kS~~k 725 (864)
+|.|||+||+| +++|++++|||++|.|||+|++|..||. .+..+++. .|+|+.+|++++++|+|+.|.+.
T Consensus 534 dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~~d~~~~~C~N~~l~~~~qkr~llapSdVa 604 (739)
T KOG1079|consen 534 DCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDHFDSSKISCKNTNLQRGEQKRVLLAPSDVA 604 (739)
T ss_pred HHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------ccccccCccccccchhhhhhhcceeechhhcc
Confidence 99999999999 9999999999999999999999999986 12334444 99999999999999999999999
Q ss_pred CceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccCccccccCCCcEEEeccccCCccccccCCCCCCcceeEEEE
Q 002934 726 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLV 805 (864)
Q Consensus 726 G~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~~sYlf~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V 805 (864)
|||||+++.+.|++||.||+||+|+++||++|+++|+..+.+|+|+|+.+|+|||+++||.+||+|||-+|||++.+++|
T Consensus 605 GwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V 684 (739)
T KOG1079|consen 605 GWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMV 684 (739)
T ss_pred ccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEEEEccCCCCCCeEEEecCCCCCCCCcccCCCCCCCCCCCCcccccccc
Q 002934 806 AGDHRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSKREDSSVSQGRAKK 860 (864)
Q Consensus 806 ~G~~RI~~fA~RDI~aGEELTfDYgy~~d~~pcwC~~pe~~~~d~~~~~~gra~k 860 (864)
+|++||||||+|.|.+||||||||+|+.+.++-|-+.+..+++++....+.+++|
T Consensus 685 ~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~~s~k~e~~~~q~~~~~ 739 (739)
T KOG1079|consen 685 AGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIERESYKVELKIFQATQQK 739 (739)
T ss_pred cCCcceeeeehhhcccCceeeeeeccCccccccccccCccccccchhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999998888887765
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-44 Score=404.42 Aligned_cols=189 Identities=31% Similarity=0.600 Sum_probs=169.9
Q ss_pred CCcCCCCCCCCCCCCcccCCCccccCCCCCCccccccccCcccCCCCccCCCcccccccCccCcccCcCcccCCCCCCCC
Q 002934 615 QYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLG 694 (864)
Q Consensus 615 ~y~PC~c~~~C~~~C~C~~~g~~Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdPd~C~~C~~sCg~g~l~ 694 (864)
..+-|+|...- +.--...|.|+.+|.||+. +.||.++.|..|++
T Consensus 64 ~~m~Cdc~~~~---------~d~~n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~-------- 107 (729)
T KOG4442|consen 64 DEMICDCKPKT---------GDGANGACACGEDCINRMT-------------------SIECSDRECPRCGV-------- 107 (729)
T ss_pred cceeeeccccc---------ccccccccccCccccchhh-------------------hcccCCccCCCccc--------
Confidence 46667776422 2112467999999999986 47888888887643
Q ss_pred CCCCCCCCCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccC--ccccccC
Q 002934 695 EPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDL 772 (864)
Q Consensus 695 ~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~--~sYlf~L 772 (864)
.|+|++||+.++.+|+||.+..+||||+|.++|++|+||+||+||||+..|+++|.+.|+..+ ++|+|.|
T Consensus 108 --------~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L 179 (729)
T KOG4442|consen 108 --------YCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMAL 179 (729)
T ss_pred --------cccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999875 5778889
Q ss_pred CCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecC---CCCCCCCcccCCCCCCC
Q 002934 773 NDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYR---YGPDQAPAWARKPEGSK 847 (864)
Q Consensus 773 ~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYg---y~~d~~pcwC~~pe~~~ 847 (864)
...++||||.+||++|||||||+|||++++|+|.|..||||||.|.|++||||||||+ ||.+.++|+||.++|+.
T Consensus 180 ~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G 257 (729)
T KOG4442|consen 180 QGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRG 257 (729)
T ss_pred cCCceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999996 67899999999999984
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.6e-30 Score=312.23 Aligned_cols=134 Identities=40% Similarity=0.755 Sum_probs=127.1
Q ss_pred cCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccC--ccccccCCCcEEEeccccCCcccccc
Q 002934 714 QQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDLNDQYVLDAYRKGDKLKFAN 791 (864)
Q Consensus 714 ~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~--~sYlf~L~~~~~IDAt~~GN~aRFIN 791 (864)
.++|.++++.+|||||||+++|.+|++|+||+||+|.+.-|+.|+..|...+ .+|||.++...+|||+.+||+|||||
T Consensus 865 kk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~In 944 (1005)
T KOG1080|consen 865 KKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFIN 944 (1005)
T ss_pred hhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheee
Confidence 3458899999999999999999999999999999999999999999999886 79999999999999999999999999
Q ss_pred CCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC--CCCCcccCCCCCCC
Q 002934 792 HSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGP--DQAPAWARKPEGSK 847 (864)
Q Consensus 792 HSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~~--d~~pcwC~~pe~~~ 847 (864)
|||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|.. +..||+|+.|+|++
T Consensus 945 HsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg 1002 (1005)
T KOG1080|consen 945 HSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRG 1002 (1005)
T ss_pred cccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCcccc
Confidence 999999999999999999999999999999999999999854 45799999999985
No 4
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.6e-28 Score=268.96 Aligned_cols=141 Identities=26% Similarity=0.471 Sum_probs=118.6
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhc
Q 002934 683 NCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYD 762 (864)
Q Consensus 683 ~C~~sCg~g~l~~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd 762 (864)
+|+..|+|+ ..|.|+.+|++.+.+|+|++++.+||||++.+.|++|+||+||+||+++..++++|...++
T Consensus 154 EC~~~C~C~----------~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~ 223 (364)
T KOG1082|consen 154 ECSVACGCH----------PDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLRE 223 (364)
T ss_pred ccccCCCCC----------CcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhcccccc
Confidence 466667764 5899999999999999999999999999999999999999999999999999998843332
Q ss_pred cc----Cccccc---------------------cCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEE
Q 002934 763 RA----NSSFLF---------------------DLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGI 813 (864)
Q Consensus 763 ~~----~~sYlf---------------------~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~----~RI~~ 813 (864)
.. +..+.+ .....+.|||...||++|||||||.||+.+..+..++. ++|+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~f 303 (364)
T KOG1082|consen 224 YLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGF 303 (364)
T ss_pred ccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeee
Confidence 22 111111 11345899999999999999999999999988887743 69999
Q ss_pred EEccCCCCCCeEEEecCCCC
Q 002934 814 FAKEHIEASEELFYDYRYGP 833 (864)
Q Consensus 814 fA~RDI~aGEELTfDYgy~~ 833 (864)
||+++|.||||||||||...
T Consensus 304 fa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 304 FALRDISPGEELTLDYGKAY 323 (364)
T ss_pred eeccccCCCcccchhhcccc
Confidence 99999999999999999663
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.90 E-value=1.1e-23 Score=190.98 Aligned_cols=113 Identities=41% Similarity=0.736 Sum_probs=102.5
Q ss_pred EEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccC--ccccccCCCcEEEeccccCCccccccCCC
Q 002934 717 ILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDLNDQYVLDAYRKGDKLKFANHSS 794 (864)
Q Consensus 717 l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~--~sYlf~L~~~~~IDAt~~GN~aRFINHSC 794 (864)
++++.++.+|+||||+.+|++|++|++|+|.++...++..+...|.... ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 5677888999999999999999999999999999998887755455554 38889888789999999999999999999
Q ss_pred CCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEec
Q 002934 795 NPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 829 (864)
Q Consensus 795 ~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDY 829 (864)
.||+.+..+..++..+|.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999999888888899999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.90 E-value=1.5e-24 Score=254.27 Aligned_cols=132 Identities=29% Similarity=0.572 Sum_probs=123.9
Q ss_pred CCCchhhhh-cccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHh-hhhhcccCccccccCCCcEEEec
Q 002934 703 QCGNMRLLL-RQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR-GKIYDRANSSFLFDLNDQYVLDA 780 (864)
Q Consensus 703 ~C~N~~lqr-g~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR-~k~yd~~~~sYlf~L~~~~~IDA 780 (864)
.|.|+++++ +..++|.|++.+.+||||.|+++|++|+||+||+||||+..+++.| +..|.....+|+..+..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 488899987 4568899999999999999999999999999999999999999988 66788888999999999999999
Q ss_pred cccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 002934 781 YRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPD 834 (864)
Q Consensus 781 t~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~~d 834 (864)
.++||.+||+||+|.|||.+++|.|+|..||++||+|||.+||||||||++-.+
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~ 1298 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSF 1298 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccccc
Confidence 999999999999999999999999999999999999999999999999986543
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=181.96 Aligned_cols=124 Identities=28% Similarity=0.419 Sum_probs=109.1
Q ss_pred hhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccC----cccccc-CCCcEEEecccc
Q 002934 709 LLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN----SSFLFD-LNDQYVLDAYRK 783 (864)
Q Consensus 709 lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~----~sYlf~-L~~~~~IDAt~~ 783 (864)
+..+....+.+..-.++|.||+|+..+.+|+||.||.|.+|...|+..|...|.... ..|+|. ++..|+|||++-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 345556677787778899999999999999999999999999999999999998763 245564 567899999975
Q ss_pred -CCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCC
Q 002934 784 -GDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYG 832 (864)
Q Consensus 784 -GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~ 832 (864)
+-++|.||||--+||..+++.++|.+++.++|.|||.+||||+||||-.
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5578999999999999999999999999999999999999999999854
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.69 E-value=3.5e-17 Score=188.88 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=66.4
Q ss_pred EEEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCC-----CCcccCCCCCC
Q 002934 776 YVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQ-----APAWARKPEGS 846 (864)
Q Consensus 776 ~~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~----~RI~~fA~RDI~aGEELTfDYgy~~d~-----~pcwC~~pe~~ 846 (864)
|+|||...||++||+||||.||+.++.++|+.. +.|+|||.+-|+||+||||||+|..+. ..|.||.-+|+
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 899999999999999999999999999999854 689999999999999999999997654 57899998887
Q ss_pred CC
Q 002934 847 KR 848 (864)
Q Consensus 847 ~~ 848 (864)
++
T Consensus 1259 gr 1260 (1262)
T KOG1141|consen 1259 GR 1260 (1262)
T ss_pred cc
Confidence 54
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.55 E-value=1.1e-15 Score=175.37 Aligned_cols=131 Identities=34% Similarity=0.566 Sum_probs=109.2
Q ss_pred CCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccCccccc-cCCC-cEEEecc
Q 002934 704 CGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLF-DLND-QYVLDAY 781 (864)
Q Consensus 704 C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~~sYlf-~L~~-~~~IDAt 781 (864)
+.|............+..+...|||+||.+.|++|++|.+|.|+++...++..|...+...+..+.| .+.. ..++|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 400 (480)
T COG2940 321 LLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQ 400 (480)
T ss_pred hhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhh
Confidence 3333333444556677788889999999999999999999999999999999998777555554444 3433 7899999
Q ss_pred ccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 002934 782 RKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPD 834 (864)
Q Consensus 782 ~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~~d 834 (864)
..|+.+||+||||.|||.+....+.|..++.++|+|||.+||||++||+...+
T Consensus 401 ~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~ 453 (480)
T COG2940 401 KAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLE 453 (480)
T ss_pred hcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccc
Confidence 99999999999999999998888888889999999999999999999986544
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.48 E-value=3.2e-14 Score=133.98 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=74.1
Q ss_pred CceeeeccccCCCCeeeEecccccCHHHHHHh---hhhhcc---------------------------------------
Q 002934 726 GWGAFLKNSVSKNDYLGEYTGELISHREADKR---GKIYDR--------------------------------------- 763 (864)
Q Consensus 726 G~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR---~k~yd~--------------------------------------- 763 (864)
|+||||+++|++|++|+++.+.+++..++... ...+..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999988776441 000000
Q ss_pred cCc---------------cccccCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEe
Q 002934 764 ANS---------------SFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYD 828 (864)
Q Consensus 764 ~~~---------------sYlf~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfD 828 (864)
... ............++.-...++.|+||||.|||.+......+...+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 000 00000012244566677789999999999999988777677889999999999999999999
Q ss_pred cC
Q 002934 829 YR 830 (864)
Q Consensus 829 Yg 830 (864)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.92 E-value=3.1e-10 Score=130.19 Aligned_cols=115 Identities=30% Similarity=0.455 Sum_probs=92.3
Q ss_pred CCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhccc--CccccccCCCcEEEe
Q 002934 702 GQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRA--NSSFLFDLNDQYVLD 779 (864)
Q Consensus 702 ~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~--~~sYlf~L~~~~~ID 779 (864)
..|.|+.+....... -.+ +|..+|.+| +|++|+..+...|...-... ...|+..+..+..||
T Consensus 301 ~~~~~~~~sk~~~~e-------~~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id 364 (463)
T KOG1081|consen 301 ERCHNQQFSKESYPE-------PQK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIID 364 (463)
T ss_pred cccccchhhhhcccc-------cch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccc
Confidence 478888876655444 112 888999999 99999999988775433222 223433344444999
Q ss_pred ccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCC
Q 002934 780 AYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYG 832 (864)
Q Consensus 780 At~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~ 832 (864)
+.++||..||+||||+|||....|.+.+..++++||.+.|++|+||||+|.+.
T Consensus 365 ~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 365 AGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred cccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 99999999999999999999999999999999999999999999999999865
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.50 E-value=8.9e-08 Score=105.11 Aligned_cols=114 Identities=23% Similarity=0.256 Sum_probs=81.1
Q ss_pred CCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccC-ccccccCCCcEEEeccccCCccccccCCCCCCcceeEE
Q 002934 725 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN-SSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVM 803 (864)
Q Consensus 725 kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~-~sYlf~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~ 803 (864)
.|--|.+++.+.+|+=|--.+|-|+--.|++.+.-.....+ .+.||.-... -|...-..|+||||-|.|||.+.
T Consensus 137 ~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---caqLwLGPaafINHDCrpnCkFv-- 211 (453)
T KOG2589|consen 137 NGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---CAQLWLGPAAFINHDCRPNCKFV-- 211 (453)
T ss_pred CCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---hhhheeccHHhhcCCCCCCceee--
Confidence 46678899999999999999999988777777743322222 2333322211 12223367899999999999652
Q ss_pred EEcCeeEEEEEEccCCCCCCeEEEecC---CCCCCCCcccCCCC
Q 002934 804 LVAGDHRVGIFAKEHIEASEELFYDYR---YGPDQAPAWARKPE 844 (864)
Q Consensus 804 ~V~G~~RI~~fA~RDI~aGEELTfDYg---y~~d~~pcwC~~pe 844 (864)
..|..++.+-++|||.||||||--|| |++...-|.|-.+|
T Consensus 212 -s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCE 254 (453)
T KOG2589|consen 212 -STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCE 254 (453)
T ss_pred -cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecc
Confidence 35667899999999999999999998 45555556665444
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.11 E-value=2.9e-06 Score=96.13 Aligned_cols=109 Identities=18% Similarity=0.298 Sum_probs=83.4
Q ss_pred ccCcEEEEecCC--CCceeeeccccCCCCeeeEecccc-cCHHHHHHhhhhhcccCccccccC---C-CcEEEeccc--c
Q 002934 713 QQQRILLAKSDV--AGWGAFLKNSVSKNDYLGEYTGEL-ISHREADKRGKIYDRANSSFLFDL---N-DQYVLDAYR--K 783 (864)
Q Consensus 713 ~~~~l~V~kS~~--kG~GLfA~edI~KGefI~EY~GEV-Is~~Ea~rR~k~yd~~~~sYlf~L---~-~~~~IDAt~--~ 783 (864)
....|.|+.+.+ .|.||++...|.+|+-.+-|.|++ ++... ...+..|++.+ + ..++||++. .
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~--------~~~n~~y~W~I~~~d~~~~~iDg~d~~~ 97 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS--------KSANNRYMWEIFSSDNGYEYIDGTDEEH 97 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc--------ccccCcceEEEEeCCCceEEeccCChhh
Confidence 577888988876 789999999999999999999998 22211 12234555543 2 348999984 6
Q ss_pred CCccccccCCCC---CCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC
Q 002934 784 GDKLKFANHSSN---PNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGP 833 (864)
Q Consensus 784 GN~aRFINHSC~---PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~~ 833 (864)
.|++||+|=+++ -|+.+. .....|.++|+|+|.+||||.++|+-++
T Consensus 98 sNWmRYV~~Ar~~eeQNL~A~----Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 98 SNWMRYVNSARSEEEQNLLAF----QIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred cceeeeecccCChhhhhHHHH----hccCceEEEecccCCCCCeEEEEeccch
Confidence 899999998885 688652 2345688999999999999999997443
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.69 E-value=1.2e-05 Score=95.37 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=52.0
Q ss_pred CCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHh
Q 002934 702 GQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR 757 (864)
Q Consensus 702 ~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR 757 (864)
..|.|+.+|.|.+.++.++++..+|||++...+|.+|.||+-|.|-++++.-++.-
T Consensus 786 ~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks 841 (1262)
T KOG1141|consen 786 PDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKS 841 (1262)
T ss_pred HHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhh
Confidence 38999999999999999999999999999999999999999999999988766654
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.74 E-value=0.16 Score=40.93 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=39.5
Q ss_pred cccCCcccchhhhhHhhhcCChHHHHHHHHHHhc--CCcHHHHHHHHHhH
Q 002934 174 KHEFSDGEDRILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLK 221 (864)
Q Consensus 174 k~~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~~--~~~sei~eRy~~L~ 221 (864)
|..|++.||.+|-.++++||.. -...||+.|. +|+.+++.||..|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998 6788888886 99999999998873
No 16
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=92.27 E-value=0.14 Score=42.83 Aligned_cols=43 Identities=16% Similarity=0.452 Sum_probs=36.3
Q ss_pred CCcccchhhhhHhhhcCChHHHHHHHHHHhc-CCcHHHHHHHHH-hHh
Q 002934 177 FSDGEDRILWTVFEEHGLGEEVINAVSQFIG-IATSEVQDRYST-LKE 222 (864)
Q Consensus 177 f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~~-~~~sei~eRy~~-L~~ 222 (864)
|++.||.+|....++||.+ ...||++|+ +++.+|+.||.. |..
T Consensus 1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND---WKKIAEHLGNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHCcC---HHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence 5788999999999999963 889999998 999999999999 753
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=92.14 E-value=0.14 Score=39.57 Aligned_cols=46 Identities=17% Similarity=0.405 Sum_probs=39.4
Q ss_pred ccCCcccchhhhhHhhhcCChHHHHHHHHHHh-cCCcHHHHHHHHHhHh
Q 002934 175 HEFSDGEDRILWTVFEEHGLGEEVINAVSQFI-GIATSEVQDRYSTLKE 222 (864)
Q Consensus 175 ~~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~-~~~~sei~eRy~~L~~ 222 (864)
..|+..||.+|-..+.+||.. -++.|+.+| ++++.+|+.||..|..
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 569999999999999999952 278888888 4999999999998754
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=91.80 E-value=0.41 Score=36.89 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHhHhhcC-CchHHHHHhhhCCCCcHHHHHHHHhh
Q 002934 498 SEWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVSTYMRD 542 (864)
Q Consensus 498 ~~W~~~E~~l~~k~v~ifG-~N~C~iA~~ll~g~KTC~EV~~ym~~ 542 (864)
..|++-|..++..++..|| .++..||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4799999999999999999 9999999987 68999999887653
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=91.63 E-value=0.43 Score=36.29 Aligned_cols=41 Identities=32% Similarity=0.407 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHhHhhcC-CchHHHHHhhhCCCCcHHHHHHHHh
Q 002934 499 EWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVSTYMR 541 (864)
Q Consensus 499 ~W~~~E~~l~~k~v~ifG-~N~C~iA~~ll~g~KTC~EV~~ym~ 541 (864)
.||.-|..++..++..|| .+...||+.+ +.||-.+|..|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHH
Confidence 499999999999999999 8999999987 6699999988764
No 20
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=0.26 Score=59.41 Aligned_cols=36 Identities=33% Similarity=0.732 Sum_probs=30.4
Q ss_pred CCCCCCCcccCCCccccC-CCC-CCccccc-cccCcccC
Q 002934 623 SMCGKQCPCLHNGTCCEK-YCG-CSKSCKN-RFRGCHCA 658 (864)
Q Consensus 623 ~~C~~~C~C~~~g~~Ce~-~Cg-C~~~C~n-Rf~GC~C~ 658 (864)
-.||.+|.|...+++|.. +|. |...|.| ||+-|.|+
T Consensus 82 ~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA 120 (729)
T KOG4442|consen 82 CACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYA 120 (729)
T ss_pred cccCccccchhhhcccCCccCCCccccccchhhhhhccC
Confidence 356789999999999999 999 9999988 78766664
No 21
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=90.87 E-value=0.093 Score=43.90 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=10.5
Q ss_pred CCCCchhhhhccc
Q 002934 702 GQCGNMRLLLRQQ 714 (864)
Q Consensus 702 ~~C~N~~lqrg~~ 714 (864)
..|+|++||++++
T Consensus 39 ~~C~NqrFqk~~y 51 (51)
T smart00570 39 SYCSNQRFQKRQY 51 (51)
T ss_pred cCccCcccccCcC
Confidence 3899999998753
No 22
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=90.74 E-value=0.058 Score=61.69 Aligned_cols=63 Identities=37% Similarity=1.008 Sum_probs=52.0
Q ss_pred CcCCCCC-CCCC-CCCcccCCCccccCCCCCCcccccc------------------------------------------
Q 002934 616 YTPCGCQ-SMCG-KQCPCLHNGTCCEKYCGCSKSCKNR------------------------------------------ 651 (864)
Q Consensus 616 y~PC~c~-~~C~-~~C~C~~~g~~Ce~~CgC~~~C~nR------------------------------------------ 651 (864)
-.+|.|+ ..|- -.|.|...|.+|..+|.|- +|.|.
T Consensus 131 k~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 131 KKKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred ccCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 4556665 5665 4899999999999999998 47664
Q ss_pred -------ccCcccCCCCccCCCcccccccCccCcc
Q 002934 652 -------FRGCHCAKSQCRSRQCPCFAAGRECDPD 679 (864)
Q Consensus 652 -------f~GC~C~~~~C~t~~CpC~~a~rECdPd 679 (864)
-.||+|.+..|..+.|.||.++.-|...
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~n 244 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECYQAGVLCSSN 244 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHHhcCCCcccc
Confidence 2799999999999999999999888543
No 23
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=88.45 E-value=0.43 Score=36.26 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=36.9
Q ss_pred cCCcccchhhhhHhhhcCChHHHHHHHHHHhc-CCcHHHHHHHHHh
Q 002934 176 EFSDGEDRILWTVFEEHGLGEEVINAVSQFIG-IATSEVQDRYSTL 220 (864)
Q Consensus 176 ~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~~-~~~sei~eRy~~L 220 (864)
.|+..||.+|-..+.++|. .-...|+++|. ++..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--NNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 3788999999999999995 22788899994 9999999999876
No 24
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=84.10 E-value=0.55 Score=37.91 Aligned_cols=30 Identities=50% Similarity=1.296 Sum_probs=27.0
Q ss_pred ccCcccCCCCccCCCcccccccCccCcccCc
Q 002934 652 FRGCHCAKSQCRSRQCPCFAAGRECDPDVCR 682 (864)
Q Consensus 652 f~GC~C~~~~C~t~~CpC~~a~rECdPd~C~ 682 (864)
..||.|.++.|....|.||+++..|.+. |.
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~g~~C~~~-C~ 32 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQAGRFCTPN-CK 32 (42)
T ss_pred CCCCcccCcChhhhhCHHHHCcCcCCCC-cc
Confidence 5799999999999999999999999986 43
No 25
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=81.71 E-value=1.3 Score=43.09 Aligned_cols=50 Identities=28% Similarity=0.455 Sum_probs=36.9
Q ss_pred ccccCCcccchhhhhHhhhcCC-----hHHHHHHHHH--------Hh-cCCcHHHHHHHHHhHh
Q 002934 173 EKHEFSDGEDRILWTVFEEHGL-----GEEVINAVSQ--------FI-GIATSEVQDRYSTLKE 222 (864)
Q Consensus 173 ek~~f~~~ed~~~~~~~~e~g~-----sd~v~~~l~~--------~~-~~~~sei~eRy~~L~~ 222 (864)
-++.|++.||++|=+.+-+||+ =|.|...|.. || ++|+.||+.|...|-.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 3788999999999999999999 2444444443 22 9999999999999853
No 26
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=79.33 E-value=1.3 Score=51.76 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=31.1
Q ss_pred cccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCC
Q 002934 789 FANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRY 831 (864)
Q Consensus 789 FINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy 831 (864)
+.||++.+ ....+..-+..+.+++.++|.+||||+++||-
T Consensus 239 ~~NH~~~~---~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEV---IKAGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchh---ccccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 57999998 22233333458999999999999999999973
No 27
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=78.51 E-value=1 Score=41.63 Aligned_cols=37 Identities=41% Similarity=1.062 Sum_probs=21.1
Q ss_pred CCcCCCCCCCC--CCCCcccCCC--------------------ccccCCCCCCcccccc
Q 002934 615 QYTPCGCQSMC--GKQCPCLHNG--------------------TCCEKYCGCSKSCKNR 651 (864)
Q Consensus 615 ~y~PC~c~~~C--~~~C~C~~~g--------------------~~Ce~~CgC~~~C~nR 651 (864)
....|+|.+.| ...|.|.... ..|...|+|+..|.||
T Consensus 45 ~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 45 FLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 45589999889 4789997654 2588888888888876
No 28
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=77.61 E-value=6.3 Score=31.71 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHhHhhcCCc-hHHHHHhhhCCCCcHHHHHHHHh
Q 002934 498 SEWKPIEKELYLKGVEIFGRN-SCLIARNLLSGLKTCMEVSTYMR 541 (864)
Q Consensus 498 ~~W~~~E~~l~~k~v~ifG~N-~C~iA~~ll~g~KTC~EV~~ym~ 541 (864)
..||.-|..+|+.++..||.+ .=.||..+ ++.+|=.++-.+..
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRM-PGGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHH-SSSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 369999999999999999998 89999876 23888888876543
No 29
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=77.08 E-value=0.89 Score=38.17 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=4.1
Q ss_pred cccccccc
Q 002934 646 KSCKNRFR 653 (864)
Q Consensus 646 ~~C~nRf~ 653 (864)
++|.||+.
T Consensus 20 sdClNR~l 27 (51)
T smart00570 20 SDCLNRML 27 (51)
T ss_pred hHHHHHHH
Confidence 45555543
No 30
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=74.66 E-value=1.7 Score=35.12 Aligned_cols=37 Identities=35% Similarity=0.942 Sum_probs=31.3
Q ss_pred CCcCCCCC-CCCC-CCCcccCCCccccCCCCCCccccccc
Q 002934 615 QYTPCGCQ-SMCG-KQCPCLHNGTCCEKYCGCSKSCKNRF 652 (864)
Q Consensus 615 ~y~PC~c~-~~C~-~~C~C~~~g~~Ce~~CgC~~~C~nRf 652 (864)
+..+|.|. ..|. ..|.|...|.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 45789996 7887 5899999999999999995 688864
No 31
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=70.97 E-value=8.7 Score=31.99 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHhHhhcCCchHHHHHhhhCCCCcHHHHHHHHhh
Q 002934 500 WKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRD 542 (864)
Q Consensus 500 W~~~E~~l~~k~v~ifG~N~C~iA~~ll~g~KTC~EV~~ym~~ 542 (864)
||.-|..+++.++..||.+...||..| |.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999986 67887888765544
No 32
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=69.53 E-value=3.7 Score=37.95 Aligned_cols=46 Identities=26% Similarity=0.683 Sum_probs=21.0
Q ss_pred cccCcccCCCCc-cCCCcccccccCc------------cCcccCcCcccCCCCCCCCCCCCCCCCCCCch
Q 002934 651 RFRGCHCAKSQC-RSRQCPCFAAGRE------------CDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNM 707 (864)
Q Consensus 651 Rf~GC~C~~~~C-~t~~CpC~~a~rE------------CdPd~C~~C~~sCg~g~l~~p~~~~~~~C~N~ 707 (864)
...||.| .+.| ....|.|...... -.+..=.+|+..|+|+ ..|.||
T Consensus 45 ~~~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~----------~~C~NR 103 (103)
T PF05033_consen 45 FLQGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCS----------PSCRNR 103 (103)
T ss_dssp GTS-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-----------TTSTT-
T ss_pred cCccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCC----------CCCCCC
Confidence 4446666 3445 5566777655432 2233334778888775 378885
No 33
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=67.01 E-value=6.9 Score=44.45 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=28.3
Q ss_pred cccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCC-eEEEecC
Q 002934 789 FANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASE-ELFYDYR 830 (864)
Q Consensus 789 FINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGE-ELTfDYg 830 (864)
++||||.||+. +...+.. +.+++...+.+++ ||+..|-
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~ 246 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYT 246 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeec
Confidence 78999999996 3334444 4466777777776 9999994
No 34
>PLN03212 Transcription repressor MYB5; Provisional
Probab=63.41 E-value=8 Score=42.16 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=43.7
Q ss_pred CCccccccCCcccchhhhhHhhhcCChHHHHHHHHHHh-cCCcHHHHHHHHHhHhh
Q 002934 169 EPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI-GIATSEVQDRYSTLKEK 223 (864)
Q Consensus 169 e~eeek~~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~-~~~~sei~eRy~~L~~k 223 (864)
.|.=-|..|+..||.+|....+++|-. -..||++| +++.-.|+.||+.+..+
T Consensus 73 ~P~I~kgpWT~EED~lLlel~~~~GnK---Ws~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 73 RPSVKRGGITSDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred chhcccCCCChHHHHHHHHHHHhcccc---HHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 455567789999999999999999953 67788888 99999999999877654
No 35
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=58.68 E-value=24 Score=30.26 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHhHhhcCC-ch---HHHHHhhhCCCC-cHHHHHHHHhh
Q 002934 498 SEWKPIEKELYLKGVEIFGR-NS---CLIARNLLSGLK-TCMEVSTYMRD 542 (864)
Q Consensus 498 ~~W~~~E~~l~~k~v~ifG~-N~---C~iA~~ll~g~K-TC~EV~~ym~~ 542 (864)
-.||+-|-..|+.+++.||. +. =.|+.++. .++ |-.+|.++++.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~-~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV-VDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC-CCCCCHHHHHHHHHH
Confidence 36999999999999999998 76 77777542 355 88899887764
No 36
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=54.18 E-value=9.3 Score=43.53 Aligned_cols=42 Identities=36% Similarity=0.859 Sum_probs=30.6
Q ss_pred CcCCcCCCCCCCCCCC----CcccCC----------------------CccccCCCCCCccccccccC
Q 002934 613 CKQYTPCGCQSMCGKQ----CPCLHN----------------------GTCCEKYCGCSKSCKNRFRG 654 (864)
Q Consensus 613 ~~~y~PC~c~~~C~~~----C~C~~~----------------------g~~Ce~~CgC~~~C~nRf~G 654 (864)
+..-..|.|...|... |.|... ...|...|+|..+|.||+..
T Consensus 104 ~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q 171 (364)
T KOG1082|consen 104 CENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQ 171 (364)
T ss_pred CccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhhc
Confidence 3456678887666532 888761 14689999999999999863
No 37
>PLN03091 hypothetical protein; Provisional
Probab=49.17 E-value=20 Score=42.03 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=44.2
Q ss_pred CCCccccccCCcccchhhhhHhhhcCChHHHHHHHHHHh-cCCcHHHHHHHHHhHhh
Q 002934 168 IEPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI-GIATSEVQDRYSTLKEK 223 (864)
Q Consensus 168 ~e~eeek~~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~-~~~~sei~eRy~~L~~k 223 (864)
..|.--|..|+..||.+|....+++|-. ...||++| +++.-+||.||+.+.+|
T Consensus 61 LdP~IkKgpWT~EED~lLLeL~k~~GnK---WskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 61 LRPDLKRGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHhCcc---hHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3455567889999999999999999952 67788888 99999999999977554
No 38
>PF14774 FAM177: FAM177 family
Probab=47.74 E-value=30 Score=34.18 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=37.9
Q ss_pred cccceeeEeCCCCeEEE-ecCCccccCCCcccccc-CC---cccc--hh-------hhhHhhhcCChHHHHHHHHHHhcC
Q 002934 143 VGRRRIYYDQHGSEALV-CSDSEEDIIEPEEEKHE-FS---DGED--RI-------LWTVFEEHGLGEEVINAVSQFIGI 208 (864)
Q Consensus 143 vgrrriYYD~~g~Eali-cSdseee~~e~eeek~~-f~---~~ed--~~-------~~~~~~e~g~sd~v~~~l~~~~~~ 208 (864)
.=||-||+ +.||.|- .|.+||| .+.++.+.+ +. +... .. +|+...-+.--|=|=+.||.|||.
T Consensus 18 ~prRiihF--sdGetmEE~StdeEe-~e~d~~~~d~~~~~~dp~~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~fGi 94 (123)
T PF14774_consen 18 KPRRIIHF--SDGETMEEYSTDEEE-EEQDEDQPDKLSVQVDPSKLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFFGI 94 (123)
T ss_pred CchheeEe--cCCceeeeecccccc-ccccccccccccccCCcccCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHhCC
Confidence 35889999 8997776 7766665 333333333 22 1222 11 223333333344555889999999
Q ss_pred CcH
Q 002934 209 ATS 211 (864)
Q Consensus 209 ~~s 211 (864)
+.+
T Consensus 95 t~~ 97 (123)
T PF14774_consen 95 TSP 97 (123)
T ss_pred Cch
Confidence 986
No 39
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=44.35 E-value=20 Score=42.18 Aligned_cols=43 Identities=28% Similarity=0.537 Sum_probs=35.8
Q ss_pred cCCCCcHHHHHHHHHhHhhcCCchHHHHHhhhCCCCcHHH-HHHHH
Q 002934 496 CSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCME-VSTYM 540 (864)
Q Consensus 496 ~~~~W~~~E~~l~~k~v~ifG~N~C~iA~~ll~g~KTC~E-V~~ym 540 (864)
....|+.-|.-|++.|+++||..+-.||+++ |+||=-| ++.|+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~EqCIl~FL 321 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQCILHFL 321 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHHHHHHHH
Confidence 3568999999999999999999999999987 8888444 34444
No 40
>PLN03212 Transcription repressor MYB5; Provisional
Probab=43.92 E-value=21 Score=39.01 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.5
Q ss_pred cccCCcccchhhhhHhhhcCChHHHHHHHHHHh--cCCcHHHHHHHHHhH
Q 002934 174 KHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI--GIATSEVQDRYSTLK 221 (864)
Q Consensus 174 k~~f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~--~~~~sei~eRy~~L~ 221 (864)
+.-|+..||.+|...+++||-.. ...||+.+ +++.-+..+||...-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGR--WRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCccc--HHHHHHhhhcCCCcchHHHHHHHhh
Confidence 55699999999999999999643 56788766 799999999997654
No 41
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=40.06 E-value=9.5 Score=45.09 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=70.1
Q ss_pred CCCce---eeeccccCCCCeeeEecccccCHH--HHHHhhhhhc-ccCc-cccccCC---CcEEEeccccCCccccccCC
Q 002934 724 VAGWG---AFLKNSVSKNDYLGEYTGELISHR--EADKRGKIYD-RANS-SFLFDLN---DQYVLDAYRKGDKLKFANHS 793 (864)
Q Consensus 724 ~kG~G---LfA~edI~KGefI~EY~GEVIs~~--Ea~rR~k~yd-~~~~-sYlf~L~---~~~~IDAt~~GN~aRFINHS 793 (864)
..+|+ ..|...+..|++|+.++|+..-.. -...+. +. .... .-+|... .....++...|+..++++|+
T Consensus 122 ~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~~ 199 (463)
T KOG1081|consen 122 KCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPL--LPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPHS 199 (463)
T ss_pred ccccCCcceeeeccccceeEEeEEcCcccccccceecCcc--cchhhccccceeccchhhHHHhhhhhccchHHHhhhhc
Confidence 34455 777779999999999999986444 111110 00 0000 0111111 11223444499999999999
Q ss_pred CCCCcceeEEEEcCeeEEEEEEccCCCCCCe------EEEecC
Q 002934 794 SNPNCFAKVMLVAGDHRVGIFAKEHIEASEE------LFYDYR 830 (864)
Q Consensus 794 C~PNc~~~~~~V~G~~RI~~fA~RDI~aGEE------LTfDYg 830 (864)
+.|+-....+...+..|+..++.+.++-+.- ++.+|.
T Consensus 200 ~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~ 242 (463)
T KOG1081|consen 200 KKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIK 242 (463)
T ss_pred cccchhhhhhhhcccchhhhcccchhhccchhhcccccccccc
Confidence 9999999999999999999999998888877 665553
No 42
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=39.47 E-value=14 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.999 Sum_probs=12.5
Q ss_pred CcCCCCCCCCC-CCCcccCCCc
Q 002934 616 YTPCGCQSMCG-KQCPCLHNGT 636 (864)
Q Consensus 616 y~PC~c~~~C~-~~C~C~~~g~ 636 (864)
--.|+|.+.|+ ..|.|.+.|.
T Consensus 307 eCGCsCr~~CdPETCaCSqaGI 328 (640)
T KOG3813|consen 307 ECGCSCRGVCDPETCACSQAGI 328 (640)
T ss_pred hhCCcccceeChhhcchhccCc
Confidence 33555566666 4666666665
No 43
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=32.61 E-value=50 Score=41.02 Aligned_cols=40 Identities=20% Similarity=0.552 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHhHhhcCCchHHHHHhhhCCCCcHHHHHHH
Q 002934 498 SEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTY 539 (864)
Q Consensus 498 ~~W~~~E~~l~~k~v~ifG~N~C~iA~~ll~g~KTC~EV~~y 539 (864)
.-||++|+-||.+.+..|-+++-+|+..| ..||=+|--+|
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVey 659 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEY 659 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHH
Confidence 56999999999999999999999999987 67886655443
No 44
>PF14100 PmoA: Methane oxygenase PmoA
Probab=32.36 E-value=46 Score=36.57 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred CcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccCc--cccccCCCcEEEeccccCCccccccC
Q 002934 715 QRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANS--SFLFDLNDQYVLDAYRKGDKLKFANH 792 (864)
Q Consensus 715 ~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~~--sYlf~L~~~~~IDAt~~GN~aRFINH 792 (864)
..|.+....-.|+++++.+.+..|.++.. +-............. .|...++.. ..... .-|++|
T Consensus 143 ~~v~l~~~~yGGl~~R~~~~~~~g~v~~s--------~G~~g~~~~~g~~a~Wv~~~g~~~~~-----~~~~~-i~~~dh 208 (271)
T PF14100_consen 143 DPVTLGDPGYGGLFWRAARSWDGGTVLTS--------EGKTGEEAAWGKRAPWVDYSGPIDGE-----DGTSG-IAILDH 208 (271)
T ss_pred cceEecCCCcceEEEEccCcccCCeEECC--------CCCcCcccccCCccCceEEEeeeCCC-----cceEE-EEEEeC
Confidence 46777766668899999998855555432 111100001111100 111111111 01112 248899
Q ss_pred CCCCCcceeEEEEcCeeEEEE------EEccCCCCCCeEEEecCC
Q 002934 793 SSNPNCFAKVMLVAGDHRVGI------FAKEHIEASEELFYDYRY 831 (864)
Q Consensus 793 SC~PNc~~~~~~V~G~~RI~~------fA~RDI~aGEELTfDYgy 831 (864)
--+||- ...|.+.+...+++ ..--.|++||.|++.|++
T Consensus 209 P~N~~~-P~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~ 252 (271)
T PF14100_consen 209 PSNPNY-PTPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRV 252 (271)
T ss_pred CCCCCC-CcceEEeccCcceecccccccCceecCCCCeEEEEEEE
Confidence 999875 47888886655544 455689999999999974
No 45
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=28.89 E-value=32 Score=32.17 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.9
Q ss_pred EEEEEccCCCCCCeEEE
Q 002934 811 VGIFAKEHIEASEELFY 827 (864)
Q Consensus 811 I~~fA~RDI~aGEELTf 827 (864)
.||||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 47999999999998874
No 46
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.67 E-value=60 Score=35.69 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=39.3
Q ss_pred CCcccchhhhhHhhhcCChHHHHHHHHHHh-----------------------------------cCCcHHHHHHHHHhH
Q 002934 177 FSDGEDRILWTVFEEHGLGEEVINAVSQFI-----------------------------------GIATSEVQDRYSTLK 221 (864)
Q Consensus 177 f~~~ed~~~~~~~~e~g~sd~v~~~l~~~~-----------------------------------~~~~sei~eRy~~L~ 221 (864)
+...|+.+||.+.+-.|+|..-|+.+.+++ +.+.+||+..|+.|.
T Consensus 146 l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~ 225 (267)
T PRK09430 146 LHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLM 225 (267)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888899999999999999998877665543 235688999999997
Q ss_pred hhcC
Q 002934 222 EKYD 225 (864)
Q Consensus 222 ~k~~ 225 (864)
.++-
T Consensus 226 ~~~H 229 (267)
T PRK09430 226 SEHH 229 (267)
T ss_pred HHhC
Confidence 7653
No 47
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=27.64 E-value=70 Score=25.45 Aligned_cols=33 Identities=39% Similarity=0.721 Sum_probs=23.7
Q ss_pred ccceeeEeCCCCeEEEecCC----ccccCCCccccccC
Q 002934 144 GRRRIYYDQHGSEALVCSDS----EEDIIEPEEEKHEF 177 (864)
Q Consensus 144 grrriYYD~~g~EalicSds----eee~~e~eeek~~f 177 (864)
|.+.|++|...||. ||+.= ||.++.++-|.++|
T Consensus 7 g~~~~~~D~~~g~~-vC~~CG~Vl~e~~i~~~~e~r~f 43 (43)
T PF08271_consen 7 GSKEIVFDPERGEL-VCPNCGLVLEENIIDEGPEWREF 43 (43)
T ss_dssp SSSEEEEETTTTEE-EETTT-BBEE-TTBSCCCSCCHC
T ss_pred cCCceEEcCCCCeE-ECCCCCCEeecccccCCcccccC
Confidence 55669999999997 99875 55566666666655
No 48
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=26.78 E-value=36 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=11.3
Q ss_pred EEEEccCCCCCCeEE
Q 002934 812 GIFAKEHIEASEELF 826 (864)
Q Consensus 812 ~~fA~RDI~aGEELT 826 (864)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 378999999999995
No 49
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=45 Score=38.86 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=32.4
Q ss_pred CccccccCC---CCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 002934 785 DKLKFANHS---SNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPD 834 (864)
Q Consensus 785 N~aRFINHS---C~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTfDYgy~~d 834 (864)
-++-|+||- |+.|..+ +..-+-++|.|+|.+|+|++--||..+.
T Consensus 217 p~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~~p~ 263 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGLKPM 263 (466)
T ss_pred chhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccccCcc
Confidence 356789995 5565532 3445678999999999999999985443
No 50
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=22.99 E-value=37 Score=40.54 Aligned_cols=31 Identities=32% Similarity=0.813 Sum_probs=19.2
Q ss_pred CccCCCcccccccCccCcc----cCcCcccCCCCC
Q 002934 661 QCRSRQCPCFAAGRECDPD----VCRNCWVSCGDG 691 (864)
Q Consensus 661 ~C~t~~CpC~~a~rECdPd----~C~~C~~sCg~g 691 (864)
-|.+..|.|-+++..|.-| .|..|...|+..
T Consensus 315 ~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp 349 (640)
T KOG3813|consen 315 VCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNP 349 (640)
T ss_pred eeChhhcchhccCceEeecCcccccccchhhcCCC
Confidence 3666667777776666544 366566666654
No 51
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=22.85 E-value=1.8e+02 Score=34.35 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHhHhhcC-CchHHHHHhhhCCCCcHHHHHH
Q 002934 497 SSEWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVST 538 (864)
Q Consensus 497 ~~~W~~~E~~l~~k~v~ifG-~N~C~iA~~ll~g~KTC~EV~~ 538 (864)
...||.-|..+++++++.|| .|+=-||..+ |+||=-|+-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI--GtKtkeeck~ 112 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI--GTKTKEECKE 112 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH--cccchHHHHH
Confidence 56899999999999999999 6999999987 8888555533
No 52
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=22.81 E-value=65 Score=32.99 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=35.6
Q ss_pred eeeEeCCCCeEEEecCCccccCCCcccc----ccCCcccchhhhhHhhhcCCh
Q 002934 147 RIYYDQHGSEALVCSDSEEDIIEPEEEK----HEFSDGEDRILWTVFEEHGLG 195 (864)
Q Consensus 147 riYYD~~g~EalicSdseee~~e~eeek----~~f~~~ed~~~~~~~~e~g~s 195 (864)
+||||+.|+|.-.+|-.+...+.-=.++ --.|.....++++.++.+|+.
T Consensus 22 ~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 22 RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 7999999999999998877644222122 245566777888888888885
Done!