Query 002937
Match_columns 864
No_of_seqs 591 out of 4060
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 13:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 7E-151 1E-155 1287.7 47.9 672 128-837 223-913 (1373)
2 KOG0385 Chromatin remodeling c 100.0 2E-116 4E-121 962.5 46.6 504 276-813 158-672 (971)
3 PLN03142 Probable chromatin-re 100.0 5.1E-94 1.1E-98 855.5 54.0 504 272-810 157-668 (1033)
4 KOG0389 SNF2 family DNA-depend 100.0 2.4E-93 5.2E-98 783.9 40.7 463 275-761 388-913 (941)
5 KOG0386 Chromatin remodeling c 100.0 6.9E-92 1.5E-96 789.3 30.6 508 272-811 381-907 (1157)
6 KOG0387 Transcription-coupled 100.0 2.5E-90 5.5E-95 761.3 41.8 487 275-779 196-702 (923)
7 KOG0391 SNF2 family DNA-depend 100.0 4.9E-90 1.1E-94 773.1 37.7 473 280-776 610-1429(1958)
8 KOG0388 SNF2 family DNA-depend 100.0 3.3E-90 7.1E-95 745.0 32.5 457 274-759 557-1177(1185)
9 KOG0383 Predicted helicase [Ge 100.0 3.6E-91 7.8E-96 786.8 19.9 624 47-690 43-696 (696)
10 KOG0392 SNF2 family DNA-depend 100.0 2.7E-84 5.8E-89 736.7 39.1 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 9.2E-73 2E-77 642.5 42.1 469 284-776 237-749 (776)
12 KOG1015 Transcription regulato 100.0 3.7E-69 7.9E-74 596.3 35.0 471 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 8.8E-67 1.9E-71 545.1 34.5 469 274-774 174-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 2.2E-66 4.8E-71 563.5 35.1 472 274-774 315-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 1.1E-62 2.4E-67 613.1 39.0 473 281-775 334-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 3.7E-58 8E-63 481.6 32.6 409 285-756 198-623 (689)
17 KOG1016 Predicted DNA helicase 100.0 1.4E-58 3E-63 503.1 28.1 484 284-778 253-892 (1387)
18 PRK04914 ATP-dependent helicas 100.0 1.2E-54 2.6E-59 517.2 34.3 416 284-759 151-628 (956)
19 KOG1001 Helicase-like transcri 100.0 1.1E-48 2.4E-53 450.1 24.0 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 2.8E-41 6.2E-46 367.2 21.1 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 3.5E-39 7.5E-44 372.3 34.0 342 283-745 253-616 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.8E-34 3.9E-39 352.4 39.0 431 284-753 14-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 9.2E-32 2E-36 287.4 33.6 422 284-755 14-500 (542)
24 KOG0298 DEAD box-containing he 100.0 5.6E-32 1.2E-36 313.3 21.3 256 302-584 372-689 (1394)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.8E-30 6.1E-35 291.8 31.2 362 283-748 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 2.9E-29 6.2E-34 289.5 31.0 339 283-736 112-455 (501)
27 PTZ00110 helicase; Provisional 99.9 8.6E-25 1.9E-29 254.0 29.1 318 285-736 152-484 (545)
28 TIGR00614 recQ_fam ATP-depende 99.9 1.7E-24 3.7E-29 248.6 28.2 308 284-730 10-329 (470)
29 KOG0354 DEAD-box like helicase 99.9 2.8E-23 6.1E-28 235.5 35.6 408 284-734 61-527 (746)
30 PRK11776 ATP-dependent RNA hel 99.9 4E-24 8.7E-29 245.9 29.0 314 284-736 25-349 (460)
31 PRK01297 ATP-dependent RNA hel 99.9 3.7E-24 8.1E-29 246.7 28.3 314 285-735 109-441 (475)
32 PLN00206 DEAD-box ATP-dependen 99.9 3.5E-24 7.5E-29 248.3 27.5 314 284-736 142-475 (518)
33 PRK10590 ATP-dependent RNA hel 99.9 3.8E-24 8.3E-29 245.0 27.3 324 285-748 23-362 (456)
34 PRK04837 ATP-dependent RNA hel 99.9 5E-24 1.1E-28 242.3 25.2 313 285-735 30-361 (423)
35 PRK11192 ATP-dependent RNA hel 99.9 1.7E-23 3.8E-28 239.0 29.2 312 284-729 22-347 (434)
36 PRK11634 ATP-dependent RNA hel 99.9 2.8E-23 6.1E-28 243.4 30.4 309 284-728 27-346 (629)
37 KOG1123 RNA polymerase II tran 99.9 4.2E-24 9.2E-29 225.7 20.3 340 282-741 299-658 (776)
38 PRK04537 ATP-dependent RNA hel 99.9 2.3E-23 4.9E-28 243.0 27.8 312 285-735 31-363 (572)
39 PRK11057 ATP-dependent DNA hel 99.9 4E-23 8.8E-28 243.4 27.8 304 284-728 24-337 (607)
40 KOG0331 ATP-dependent RNA heli 99.9 7.5E-23 1.6E-27 225.6 26.9 311 285-728 113-442 (519)
41 TIGR01389 recQ ATP-dependent D 99.9 8.7E-23 1.9E-27 241.4 28.9 304 284-728 12-325 (591)
42 PTZ00424 helicase 45; Provisio 99.9 1.1E-22 2.4E-27 230.6 27.2 316 284-736 49-374 (401)
43 KOG0330 ATP-dependent RNA heli 99.9 2.9E-23 6.3E-28 214.3 19.9 322 285-746 83-415 (476)
44 PLN03137 ATP-dependent DNA hel 99.9 4.3E-22 9.3E-27 236.0 27.4 311 284-731 459-784 (1195)
45 PRK11448 hsdR type I restricti 99.9 7.5E-22 1.6E-26 242.1 29.8 357 283-733 411-815 (1123)
46 TIGR03817 DECH_helic helicase/ 99.9 2.4E-21 5.2E-26 231.7 30.9 330 285-744 36-394 (742)
47 PRK13767 ATP-dependent helicas 99.9 2.8E-21 6E-26 235.8 30.7 322 284-731 31-395 (876)
48 TIGR00643 recG ATP-dependent D 99.9 6.3E-21 1.4E-25 225.8 31.5 305 284-728 234-560 (630)
49 TIGR00580 mfd transcription-re 99.9 1.1E-20 2.4E-25 227.9 32.8 308 284-735 450-769 (926)
50 PRK10917 ATP-dependent DNA hel 99.9 1.2E-20 2.6E-25 224.9 30.9 304 284-727 260-582 (681)
51 COG0513 SrmB Superfamily II DN 99.9 1.8E-20 4E-25 215.8 27.5 329 284-749 50-392 (513)
52 PRK10689 transcription-repair 99.9 4.8E-20 1E-24 227.1 29.5 302 284-727 599-912 (1147)
53 KOG0328 Predicted ATP-dependen 99.8 3.8E-20 8.2E-25 183.3 16.7 314 286-737 50-374 (400)
54 PRK02362 ski2-like helicase; P 99.8 3.1E-19 6.7E-24 215.9 27.8 318 285-735 23-396 (737)
55 COG1201 Lhr Lhr-like helicases 99.8 4.4E-19 9.5E-24 206.8 26.3 312 284-728 21-356 (814)
56 TIGR01587 cas3_core CRISPR-ass 99.8 1.4E-18 3E-23 193.9 26.9 328 307-750 2-355 (358)
57 PRK00254 ski2-like helicase; P 99.8 2.5E-18 5.4E-23 207.5 31.1 317 284-737 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.8 4.7E-19 1E-23 212.9 23.5 306 284-728 21-370 (674)
59 TIGR00348 hsdR type I site-spe 99.8 2.9E-18 6.2E-23 203.5 28.3 361 284-734 237-649 (667)
60 TIGR03714 secA2 accessory Sec 99.8 4E-18 8.8E-23 198.0 26.6 116 606-727 406-530 (762)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.8 6.7E-18 1.4E-22 198.1 26.6 106 622-732 270-390 (844)
62 KOG0350 DEAD-box ATP-dependent 99.8 1.3E-18 2.8E-23 185.2 18.4 371 285-752 159-554 (620)
63 KOG0345 ATP-dependent RNA heli 99.8 1.2E-17 2.6E-22 176.9 24.4 311 284-730 27-360 (567)
64 COG0514 RecQ Superfamily II DN 99.8 1.2E-17 2.7E-22 188.1 24.5 304 284-729 16-332 (590)
65 TIGR00963 secA preprotein tran 99.8 5E-18 1.1E-22 195.9 20.0 117 607-728 388-511 (745)
66 PRK09200 preprotein translocas 99.8 7.7E-17 1.7E-21 189.3 30.0 117 606-727 410-534 (790)
67 KOG0342 ATP-dependent RNA heli 99.8 1.2E-17 2.6E-22 178.2 20.6 306 285-725 104-428 (543)
68 KOG0343 RNA Helicase [RNA proc 99.8 7.5E-17 1.6E-21 173.5 25.2 325 285-750 91-435 (758)
69 COG4096 HsdR Type I site-speci 99.8 8.8E-18 1.9E-22 190.4 19.2 354 282-733 162-545 (875)
70 KOG0335 ATP-dependent RNA heli 99.8 1.1E-17 2.4E-22 181.7 19.0 311 284-731 95-441 (482)
71 PRK12898 secA preprotein trans 99.8 2.1E-16 4.5E-21 181.8 29.6 130 606-745 455-592 (656)
72 KOG0333 U5 snRNP-like RNA heli 99.8 2.8E-17 6E-22 176.0 20.0 338 285-735 267-623 (673)
73 PRK09751 putative ATP-dependen 99.8 1.2E-16 2.5E-21 198.2 28.2 96 623-721 243-371 (1490)
74 KOG0340 ATP-dependent RNA heli 99.7 2.2E-16 4.8E-21 161.8 23.7 328 285-750 29-377 (442)
75 KOG0338 ATP-dependent RNA heli 99.7 1.5E-16 3.3E-21 169.7 23.2 321 285-744 203-539 (691)
76 KOG4284 DEAD box protein [Tran 99.7 2.9E-17 6.4E-22 179.1 17.3 310 286-725 48-370 (980)
77 PHA02653 RNA helicase NPH-II; 99.7 2.3E-16 4.9E-21 184.5 25.8 322 282-738 157-516 (675)
78 PRK09401 reverse gyrase; Revie 99.7 5.5E-16 1.2E-20 191.9 29.1 292 283-722 78-432 (1176)
79 COG4889 Predicted helicase [Ge 99.7 3.5E-17 7.7E-22 183.2 16.3 389 283-733 159-585 (1518)
80 COG1205 Distinct helicase fami 99.7 2.8E-16 6.1E-21 188.8 24.8 330 285-745 70-431 (851)
81 COG1200 RecG RecG-like helicas 99.7 9.3E-16 2E-20 172.3 26.6 303 284-725 261-582 (677)
82 KOG0341 DEAD-box protein abstr 99.7 5.7E-18 1.2E-22 174.4 7.9 339 266-743 167-535 (610)
83 TIGR03158 cas3_cyano CRISPR-as 99.7 9.3E-16 2E-20 169.6 25.9 85 623-719 271-357 (357)
84 KOG0348 ATP-dependent RNA heli 99.7 7.3E-16 1.6E-20 165.5 23.6 121 606-729 403-549 (708)
85 KOG0339 ATP-dependent RNA heli 99.7 9.5E-16 2.1E-20 163.4 19.8 319 285-739 245-578 (731)
86 PRK05580 primosome assembly pr 99.7 6.8E-15 1.5E-19 175.0 29.3 154 284-467 143-305 (679)
87 KOG0336 ATP-dependent RNA heli 99.7 2.8E-15 6.1E-20 155.8 20.1 316 285-736 242-572 (629)
88 KOG0332 ATP-dependent RNA heli 99.7 1.5E-15 3.3E-20 156.6 17.6 336 268-739 89-447 (477)
89 cd00079 HELICc Helicase superf 99.7 2.5E-16 5.5E-21 148.5 11.0 120 608-730 12-131 (131)
90 PF04851 ResIII: Type III rest 99.7 4.8E-16 1E-20 155.9 12.3 165 284-467 2-183 (184)
91 KOG0326 ATP-dependent RNA heli 99.7 2.4E-16 5.3E-21 159.0 9.9 302 285-724 107-419 (459)
92 PRK13104 secA preprotein trans 99.7 1.9E-14 4E-19 168.8 26.6 120 606-730 426-583 (896)
93 COG4098 comFA Superfamily II D 99.7 8E-14 1.7E-18 142.8 27.7 316 282-738 94-418 (441)
94 COG1202 Superfamily II helicas 99.7 4.4E-15 9.5E-20 160.7 19.4 314 284-736 215-553 (830)
95 TIGR01054 rgy reverse gyrase. 99.6 2E-14 4.4E-19 178.4 27.4 279 284-705 77-408 (1171)
96 COG1204 Superfamily II helicas 99.6 1.2E-14 2.5E-19 172.5 22.7 309 285-724 31-396 (766)
97 TIGR00595 priA primosomal prot 99.6 1.9E-14 4.2E-19 165.1 23.8 295 308-733 1-380 (505)
98 TIGR01970 DEAH_box_HrpB ATP-de 99.6 2E-14 4.3E-19 172.3 24.6 108 624-737 209-337 (819)
99 KOG0347 RNA helicase [RNA proc 99.6 1.2E-14 2.7E-19 156.6 19.9 341 305-757 220-612 (731)
100 PRK12906 secA preprotein trans 99.6 3.2E-14 6.9E-19 166.1 23.7 118 606-728 422-547 (796)
101 PRK09694 helicase Cas3; Provis 99.6 1.1E-13 2.5E-18 165.8 28.3 357 283-724 284-665 (878)
102 PRK14701 reverse gyrase; Provi 99.6 7.8E-14 1.7E-18 176.6 26.8 101 613-724 322-446 (1638)
103 PRK12904 preprotein translocas 99.6 1.3E-13 2.7E-18 161.8 26.2 120 606-730 412-569 (830)
104 COG1197 Mfd Transcription-repa 99.6 3.2E-13 7E-18 160.3 28.4 308 284-735 593-912 (1139)
105 PRK11664 ATP-dependent RNA hel 99.6 9.4E-14 2E-18 166.9 23.4 110 623-738 211-341 (812)
106 PRK13107 preprotein translocas 99.6 1.7E-13 3.6E-18 160.4 24.6 119 606-729 431-586 (908)
107 KOG0334 RNA helicase [RNA proc 99.6 1.7E-13 3.7E-18 159.5 22.9 314 284-735 386-719 (997)
108 KOG0344 ATP-dependent RNA heli 99.6 5.8E-14 1.3E-18 153.9 16.5 116 606-726 371-487 (593)
109 PF00271 Helicase_C: Helicase 99.5 5.6E-15 1.2E-19 125.8 5.8 78 642-722 1-78 (78)
110 KOG0346 RNA helicase [RNA proc 99.5 2.3E-13 4.9E-18 143.5 16.9 119 607-729 252-405 (569)
111 TIGR00631 uvrb excinuclease AB 99.5 5.6E-12 1.2E-16 148.4 30.0 134 606-745 424-564 (655)
112 KOG0327 Translation initiation 99.5 1.3E-13 2.8E-18 144.1 14.2 312 285-736 48-370 (397)
113 KOG0351 ATP-dependent DNA heli 99.5 4.5E-13 9.8E-18 160.1 18.4 313 284-733 263-591 (941)
114 smart00487 DEXDc DEAD-like hel 99.5 2.9E-13 6.3E-18 136.9 13.9 155 284-468 7-172 (201)
115 KOG0952 DNA/RNA helicase MER3/ 99.5 2.5E-12 5.4E-17 148.6 20.9 309 300-740 122-495 (1230)
116 PRK12900 secA preprotein trans 99.5 1.1E-11 2.4E-16 145.8 25.2 117 606-727 580-704 (1025)
117 cd00046 DEXDc DEAD-like helica 99.4 7.9E-13 1.7E-17 125.7 13.1 136 305-466 1-144 (144)
118 PRK05298 excinuclease ABC subu 99.4 9.8E-11 2.1E-15 139.0 31.6 123 607-735 429-556 (652)
119 KOG0337 ATP-dependent RNA heli 99.4 9.4E-13 2E-17 138.3 12.1 311 285-735 43-367 (529)
120 TIGR01967 DEAH_box_HrpA ATP-de 99.4 6.9E-12 1.5E-16 154.2 21.6 109 623-739 278-407 (1283)
121 PRK11131 ATP-dependent RNA hel 99.4 2.5E-11 5.4E-16 148.8 26.0 109 623-739 285-414 (1294)
122 smart00490 HELICc helicase sup 99.4 4.8E-13 1E-17 114.7 7.3 81 639-722 2-82 (82)
123 PRK12899 secA preprotein trans 99.4 1E-10 2.2E-15 137.6 27.3 119 606-729 550-676 (970)
124 COG1203 CRISPR-associated heli 99.4 2.5E-11 5.4E-16 146.1 22.5 354 284-751 194-567 (733)
125 PRK12326 preprotein translocas 99.4 1.1E-10 2.3E-15 134.0 25.8 120 606-730 409-543 (764)
126 PF11496 HDA2-3: Class II hist 99.4 2E-11 4.2E-16 129.6 17.7 216 532-749 4-258 (297)
127 COG0556 UvrB Helicase subunit 99.3 1.7E-09 3.7E-14 117.6 30.5 128 617-748 439-571 (663)
128 KOG0352 ATP-dependent DNA heli 99.3 1E-10 2.2E-15 123.1 20.1 321 288-731 23-359 (641)
129 cd00268 DEADc DEAD-box helicas 99.3 4E-11 8.6E-16 122.5 15.5 153 285-467 21-185 (203)
130 KOG0353 ATP-dependent DNA heli 99.3 6.6E-11 1.4E-15 122.2 16.7 298 284-715 93-405 (695)
131 PRK13103 secA preprotein trans 99.3 3.2E-10 6.8E-15 133.3 23.1 120 606-730 431-587 (913)
132 PF00270 DEAD: DEAD/DEAH box h 99.3 3.7E-11 8.1E-16 118.7 12.8 155 288-472 2-167 (169)
133 KOG0951 RNA helicase BRR2, DEA 99.2 2.1E-10 4.6E-15 134.5 19.1 71 648-722 607-688 (1674)
134 PRK12903 secA preprotein trans 99.2 4E-09 8.7E-14 122.8 25.6 120 606-730 408-535 (925)
135 TIGR01407 dinG_rel DnaQ family 99.2 2.6E-10 5.6E-15 140.3 16.8 86 282-368 242-333 (850)
136 PF13872 AAA_34: P-loop contai 99.1 8.9E-10 1.9E-14 114.6 15.0 234 280-550 32-302 (303)
137 KOG0947 Cytoplasmic exosomal R 99.0 3.3E-09 7.1E-14 121.9 14.7 154 271-466 283-444 (1248)
138 COG1110 Reverse gyrase [DNA re 99.0 5.7E-08 1.2E-12 113.4 24.4 128 285-440 82-215 (1187)
139 CHL00122 secA preprotein trans 99.0 6.9E-08 1.5E-12 113.5 24.7 85 606-694 406-491 (870)
140 COG4581 Superfamily II RNA hel 98.9 5.3E-08 1.1E-12 116.6 19.7 145 282-466 116-270 (1041)
141 KOG1244 Predicted transcriptio 98.9 3.1E-10 6.7E-15 111.9 0.7 53 47-99 277-332 (336)
142 KOG0329 ATP-dependent RNA heli 98.9 5.1E-08 1.1E-12 96.4 15.6 125 286-440 65-197 (387)
143 PRK12902 secA preprotein trans 98.9 1.9E-07 4.1E-12 109.6 22.4 85 606-694 421-506 (939)
144 TIGR00596 rad1 DNA repair prot 98.9 4.9E-08 1.1E-12 116.8 18.1 43 604-646 266-317 (814)
145 PF00385 Chromo: Chromo (CHRro 98.8 6.4E-10 1.4E-14 87.3 0.6 49 193-241 2-54 (55)
146 COG1198 PriA Primosomal protei 98.8 1.3E-07 2.8E-12 111.0 19.6 376 284-735 197-604 (730)
147 COG0610 Type I site-specific r 98.8 1.1E-07 2.4E-12 117.0 17.7 139 303-470 272-417 (962)
148 PRK07246 bifunctional ATP-depe 98.8 3.9E-06 8.4E-11 102.3 30.1 90 612-707 635-726 (820)
149 PRK12901 secA preprotein trans 98.8 7.3E-07 1.6E-11 105.9 22.7 119 606-729 610-736 (1112)
150 KOG1513 Nuclear helicase MOP-3 98.7 2.2E-06 4.7E-11 97.1 23.2 241 277-553 257-539 (1300)
151 TIGR00604 rad3 DNA repair heli 98.7 1.2E-06 2.7E-11 105.9 22.7 72 284-355 9-83 (705)
152 KOG0948 Nuclear exosomal RNA h 98.7 4.5E-07 9.7E-12 102.3 17.1 140 284-466 128-276 (1041)
153 PRK08074 bifunctional ATP-depe 98.7 3.4E-06 7.3E-11 104.8 26.2 95 612-709 739-839 (928)
154 KOG4299 PHD Zn-finger protein 98.7 5.7E-09 1.2E-13 115.9 1.6 48 51-98 253-305 (613)
155 TIGR03117 cas_csf4 CRISPR-asso 98.7 9.9E-06 2.2E-10 94.6 27.4 78 290-367 2-86 (636)
156 KOG0949 Predicted helicase, DE 98.6 3.9E-06 8.4E-11 97.5 23.0 161 286-479 512-682 (1330)
157 COG1199 DinG Rad3-related DNA 98.6 4.7E-06 1E-10 100.7 23.5 82 621-707 476-560 (654)
158 KOG0922 DEAH-box RNA helicase 98.5 5.7E-06 1.2E-10 93.5 20.3 110 626-738 260-392 (674)
159 PRK15483 type III restriction- 98.5 9.4E-07 2E-11 105.8 14.9 143 305-467 60-239 (986)
160 PF02399 Herpes_ori_bp: Origin 98.5 6.7E-06 1.4E-10 96.0 20.6 113 607-730 266-384 (824)
161 cd00024 CHROMO Chromatin organ 98.5 5.5E-08 1.2E-12 76.3 1.3 49 193-241 4-54 (55)
162 KOG0920 ATP-dependent RNA heli 98.4 1.5E-05 3.2E-10 95.1 21.4 128 608-741 395-549 (924)
163 PF07652 Flavi_DEAD: Flaviviru 98.4 1E-06 2.2E-11 81.8 8.9 130 302-466 2-136 (148)
164 PRK11747 dinG ATP-dependent DN 98.4 4E-05 8.6E-10 92.3 25.2 90 611-707 521-617 (697)
165 KOG0950 DNA polymerase theta/e 98.4 5.7E-06 1.2E-10 96.7 16.8 153 285-470 223-391 (1008)
166 PF00628 PHD: PHD-finger; Int 98.4 8.6E-08 1.9E-12 73.9 1.0 44 53-96 1-49 (51)
167 KOG0825 PHD Zn-finger protein 98.4 1.3E-07 2.8E-12 106.0 2.4 48 51-98 215-266 (1134)
168 KOG0924 mRNA splicing factor A 98.4 9.1E-06 2E-10 91.0 16.7 116 626-744 565-705 (1042)
169 COG5034 TNG2 Chromatin remodel 98.3 2.4E-07 5.1E-12 91.7 2.9 47 48-97 218-269 (271)
170 PF13871 Helicase_C_4: Helicas 98.3 2.2E-06 4.7E-11 89.4 8.9 90 665-757 52-149 (278)
171 COG1643 HrpA HrpA-like helicas 98.3 2.8E-05 6.1E-10 93.0 18.4 113 624-739 259-390 (845)
172 smart00298 CHROMO Chromatin or 98.2 3.7E-07 8.1E-12 71.6 1.1 49 193-241 3-52 (55)
173 KOG0349 Putative DEAD-box RNA 98.2 2.7E-06 5.8E-11 90.3 7.7 95 624-721 505-602 (725)
174 PF00385 Chromo: Chromo (CHRro 98.2 3.6E-07 7.8E-12 71.6 0.9 54 101-173 2-55 (55)
175 TIGR02562 cas3_yersinia CRISPR 98.2 0.0011 2.5E-08 79.9 29.8 188 287-474 410-642 (1110)
176 smart00489 DEXDc3 DEAD-like he 98.2 1.3E-05 2.9E-10 86.0 12.1 72 284-355 7-84 (289)
177 smart00488 DEXDc2 DEAD-like he 98.2 1.3E-05 2.9E-10 86.0 12.1 72 284-355 7-84 (289)
178 smart00249 PHD PHD zinc finger 98.1 1.6E-06 3.5E-11 65.3 3.2 43 53-95 1-47 (47)
179 cd04718 BAH_plant_2 BAH, or Br 98.1 1.2E-06 2.7E-11 81.1 2.4 29 72-100 1-29 (148)
180 COG0653 SecA Preprotein transl 98.1 0.00035 7.6E-09 82.5 23.1 113 606-723 411-534 (822)
181 cd00024 CHROMO Chromatin organ 98.1 2.4E-06 5.2E-11 67.0 3.5 51 101-172 4-54 (55)
182 KOG1973 Chromatin remodeling p 98.0 3.1E-06 6.8E-11 89.4 2.9 50 47-98 215-268 (274)
183 KOG0923 mRNA splicing factor A 97.9 0.00037 8E-09 78.5 17.6 108 625-740 474-610 (902)
184 KOG1512 PHD Zn-finger protein 97.9 4.8E-06 1E-10 83.3 1.9 49 47-97 310-362 (381)
185 KOG2748 Uncharacterized conser 97.9 3.6E-06 7.7E-11 87.1 0.9 39 101-155 12-50 (369)
186 KOG0953 Mitochondrial RNA heli 97.9 4.3E-05 9.3E-10 84.3 8.6 99 622-724 356-464 (700)
187 PF13086 AAA_11: AAA domain; P 97.8 9.8E-05 2.1E-09 76.8 11.1 66 285-354 1-75 (236)
188 COG3587 Restriction endonuclea 97.8 0.0018 4E-08 75.4 21.3 44 679-722 485-528 (985)
189 KOG0957 PHD finger protein [Ge 97.7 9.2E-06 2E-10 87.2 1.4 48 49-96 542-596 (707)
190 KOG0926 DEAH-box RNA helicase 97.6 0.00017 3.6E-09 82.7 9.4 65 668-735 621-703 (1172)
191 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00058 1.3E-08 71.5 12.7 122 283-440 75-209 (266)
192 smart00298 CHROMO Chromatin or 97.6 7.2E-05 1.6E-09 58.5 4.3 36 131-173 18-53 (55)
193 KOG0954 PHD finger protein [Ge 97.5 4.9E-05 1.1E-09 85.8 2.2 47 50-98 270-321 (893)
194 KOG4443 Putative transcription 97.5 5.1E-05 1.1E-09 85.1 2.2 50 48-97 65-117 (694)
195 KOG0925 mRNA splicing factor A 97.4 0.0043 9.2E-08 67.9 15.2 62 679-742 315-393 (699)
196 KOG4150 Predicted ATP-dependen 97.3 0.00097 2.1E-08 73.7 9.6 133 606-743 507-647 (1034)
197 PRK10536 hypothetical protein; 97.3 0.0013 2.9E-08 67.9 10.1 150 286-470 60-216 (262)
198 KOG0955 PHD finger protein BR1 97.3 0.00018 4E-09 87.0 4.3 52 48-101 216-272 (1051)
199 KOG1473 Nucleosome remodeling 97.3 0.00017 3.7E-09 85.1 3.3 48 51-98 344-391 (1414)
200 KOG4323 Polycomb-like PHD Zn-f 97.2 0.00012 2.6E-09 80.5 1.3 51 52-102 169-228 (464)
201 KOG1245 Chromatin remodeling c 97.2 8E-05 1.7E-09 93.9 -0.3 53 47-99 1104-1159(1404)
202 PF02562 PhoH: PhoH-like prote 97.2 0.002 4.2E-08 64.9 9.3 155 286-471 5-160 (205)
203 KOG1911 Heterochromatin-associ 97.0 0.0007 1.5E-08 71.9 4.9 57 190-246 47-103 (270)
204 KOG1802 RNA helicase nonsense 97.0 0.0019 4.1E-08 73.0 8.1 77 284-366 409-486 (935)
205 COG5141 PHD zinc finger-contai 97.0 0.00035 7.6E-09 75.3 2.0 65 47-116 189-258 (669)
206 PF13307 Helicase_C_2: Helicas 96.9 0.0023 5E-08 62.9 6.7 81 621-706 6-92 (167)
207 KOG2748 Uncharacterized conser 96.8 0.0011 2.3E-08 69.3 4.0 50 192-242 11-60 (369)
208 PF13401 AAA_22: AAA domain; P 96.8 0.0011 2.3E-08 62.2 3.4 35 430-466 89-125 (131)
209 PF13604 AAA_30: AAA domain; P 96.6 0.018 4E-07 58.1 11.6 58 285-345 1-58 (196)
210 KOG0956 PHD finger protein AF1 96.6 0.00098 2.1E-08 74.9 1.9 61 52-116 6-73 (900)
211 PRK14873 primosome assembly pr 96.6 0.011 2.3E-07 70.6 10.5 126 313-466 169-303 (665)
212 KOG1131 RNA polymerase II tran 96.5 0.0053 1.1E-07 67.7 6.7 65 278-342 9-75 (755)
213 PF09848 DUF2075: Uncharacteri 96.5 0.01 2.3E-07 65.9 9.4 45 307-351 4-49 (352)
214 TIGR00376 DNA helicase, putati 96.2 0.039 8.5E-07 65.9 12.9 67 284-354 156-223 (637)
215 KOG1803 DNA helicase [Replicat 96.2 0.0067 1.5E-07 68.6 5.9 63 284-350 184-247 (649)
216 KOG1911 Heterochromatin-associ 96.1 0.0038 8.3E-08 66.3 3.0 25 131-155 64-89 (270)
217 PF13831 PHD_2: PHD-finger; PD 96.0 0.0015 3.2E-08 45.7 -0.5 34 61-96 2-36 (36)
218 TIGR01448 recD_rel helicase, p 95.9 0.055 1.2E-06 65.7 12.1 65 283-351 321-386 (720)
219 KOG0951 RNA helicase BRR2, DEA 95.9 0.022 4.7E-07 69.2 8.0 142 269-445 1104-1270(1674)
220 PLN03025 replication factor C 95.8 0.13 2.9E-06 56.3 13.5 42 290-331 18-61 (319)
221 cd00009 AAA The AAA+ (ATPases 95.5 0.12 2.6E-06 48.6 10.5 42 304-346 19-60 (151)
222 COG0553 HepA Superfamily II DN 95.5 0.007 1.5E-07 76.1 2.3 179 285-488 84-289 (866)
223 PF12340 DUF3638: Protein of u 95.4 0.034 7.4E-07 56.5 6.6 73 282-355 20-92 (229)
224 TIGR01447 recD exodeoxyribonuc 95.2 0.12 2.7E-06 60.9 11.5 54 288-345 148-205 (586)
225 KOG1133 Helicase of the DEAD s 95.1 0.96 2.1E-05 52.4 17.4 80 625-707 630-721 (821)
226 PRK04296 thymidine kinase; Pro 95.1 0.056 1.2E-06 54.3 7.1 34 307-341 5-38 (190)
227 PRK07003 DNA polymerase III su 95.0 0.25 5.4E-06 58.7 12.9 59 428-486 119-178 (830)
228 PRK10875 recD exonuclease V su 94.8 0.094 2E-06 62.1 8.9 57 286-346 153-212 (615)
229 TIGR02881 spore_V_K stage V sp 94.6 0.076 1.7E-06 56.3 6.9 27 305-331 43-69 (261)
230 COG3421 Uncharacterized protei 94.6 0.024 5.2E-07 63.9 3.1 37 310-346 3-40 (812)
231 PRK06526 transposase; Provisio 94.5 0.089 1.9E-06 55.3 7.0 52 293-353 91-142 (254)
232 PRK14956 DNA polymerase III su 94.5 0.23 5E-06 56.4 10.7 43 289-331 22-67 (484)
233 KOG0383 Predicted helicase [Ge 94.4 0.024 5.1E-07 66.6 2.6 71 50-152 176-246 (696)
234 PRK09112 DNA polymerase III su 94.4 0.17 3.6E-06 55.9 9.0 42 290-331 28-72 (351)
235 KOG1132 Helicase of the DEAD s 94.3 0.18 3.9E-06 59.8 9.4 46 284-329 20-69 (945)
236 PRK12402 replication factor C 94.2 0.27 5.8E-06 54.2 10.4 40 293-332 23-64 (337)
237 smart00382 AAA ATPases associa 94.0 0.17 3.7E-06 47.0 7.4 44 304-348 2-45 (148)
238 COG1875 NYN ribonuclease and A 93.9 0.21 4.5E-06 53.7 8.1 70 274-345 216-288 (436)
239 TIGR03015 pepcterm_ATPase puta 93.8 0.37 7.9E-06 51.2 10.1 43 287-329 25-68 (269)
240 PRK12723 flagellar biosynthesi 93.7 0.53 1.1E-05 52.6 11.3 56 428-483 254-314 (388)
241 PRK05703 flhF flagellar biosyn 93.6 0.78 1.7E-05 52.1 12.8 56 428-483 299-359 (424)
242 PRK08181 transposase; Validate 93.6 0.54 1.2E-05 49.8 10.7 53 286-339 88-140 (269)
243 PRK05707 DNA polymerase III su 93.4 0.52 1.1E-05 51.6 10.7 47 285-331 3-49 (328)
244 PRK14958 DNA polymerase III su 93.4 0.59 1.3E-05 54.4 11.5 42 290-331 21-65 (509)
245 PRK12323 DNA polymerase III su 93.1 0.69 1.5E-05 54.4 11.4 25 306-330 40-64 (700)
246 TIGR02880 cbbX_cfxQ probable R 93.0 0.15 3.3E-06 54.6 5.7 37 304-340 58-97 (284)
247 PRK14949 DNA polymerase III su 92.9 0.74 1.6E-05 56.0 11.7 42 290-331 21-65 (944)
248 smart00491 HELICc2 helicase su 92.9 0.38 8.3E-06 45.7 7.6 54 652-706 23-80 (142)
249 PRK07940 DNA polymerase III su 92.8 0.56 1.2E-05 52.6 9.9 26 306-331 38-63 (394)
250 CHL00181 cbbX CbbX; Provisiona 92.8 0.19 4.1E-06 53.9 6.0 28 304-331 59-86 (287)
251 PRK00440 rfc replication facto 92.8 1.4 3E-05 48.1 13.0 26 306-331 40-65 (319)
252 PRK08084 DNA replication initi 92.7 0.88 1.9E-05 47.4 10.7 29 303-331 44-72 (235)
253 PF13177 DNA_pol3_delta2: DNA 92.5 1.2 2.7E-05 43.3 10.8 44 290-333 2-48 (162)
254 TIGR03420 DnaA_homol_Hda DnaA 92.5 0.66 1.4E-05 47.8 9.5 29 303-331 37-65 (226)
255 PF06862 DUF1253: Protein of u 92.5 2.9 6.2E-05 47.3 14.8 127 607-735 280-414 (442)
256 PRK14960 DNA polymerase III su 92.3 0.59 1.3E-05 55.0 9.6 39 292-330 22-63 (702)
257 PRK14961 DNA polymerase III su 92.2 1 2.2E-05 50.3 11.1 41 289-329 20-63 (363)
258 PRK07994 DNA polymerase III su 92.2 0.81 1.8E-05 54.4 10.6 42 290-331 21-65 (647)
259 PRK06645 DNA polymerase III su 92.1 0.87 1.9E-05 52.7 10.6 43 289-331 25-70 (507)
260 KOG0989 Replication factor C, 91.8 1.2 2.6E-05 47.0 10.1 42 289-330 40-83 (346)
261 PRK11889 flhF flagellar biosyn 91.7 1.4 3.1E-05 48.7 11.1 36 305-341 242-277 (436)
262 PF13245 AAA_19: Part of AAA d 91.7 0.49 1.1E-05 39.6 5.9 43 304-346 10-55 (76)
263 KOG4299 PHD Zn-finger protein 91.7 0.094 2E-06 59.7 2.1 47 51-97 47-94 (613)
264 PRK08451 DNA polymerase III su 91.6 1.3 2.9E-05 51.4 11.4 42 290-331 19-63 (535)
265 PRK08769 DNA polymerase III su 91.5 2 4.4E-05 46.7 12.0 48 285-332 4-54 (319)
266 PRK08116 hypothetical protein; 91.4 1.5 3.2E-05 46.7 10.7 44 304-348 114-157 (268)
267 PF14446 Prok-RING_1: Prokaryo 91.4 0.11 2.3E-06 39.7 1.4 30 51-80 5-38 (54)
268 PRK14974 cell division protein 91.3 1.2 2.6E-05 48.8 10.0 47 306-353 142-192 (336)
269 PRK14952 DNA polymerase III su 91.3 1.4 3.1E-05 51.9 11.3 41 290-330 18-61 (584)
270 PRK14964 DNA polymerase III su 91.3 1.9 4E-05 49.7 11.9 39 292-330 20-61 (491)
271 PHA02544 44 clamp loader, smal 91.2 1.6 3.4E-05 47.7 11.2 40 429-468 101-142 (316)
272 KOG0991 Replication factor C, 91.1 1.3 2.9E-05 44.6 9.2 28 303-330 47-74 (333)
273 PRK14955 DNA polymerase III su 91.0 2.1 4.5E-05 48.4 12.0 42 290-331 21-65 (397)
274 PRK09111 DNA polymerase III su 90.9 1.7 3.7E-05 51.5 11.6 42 290-331 29-73 (598)
275 PF13173 AAA_14: AAA domain 90.9 1.6 3.5E-05 40.5 9.4 26 304-329 2-27 (128)
276 PRK08691 DNA polymerase III su 90.9 2.4 5.2E-05 50.5 12.6 42 290-331 21-65 (709)
277 PRK14957 DNA polymerase III su 90.7 1.7 3.7E-05 50.8 11.1 40 291-330 22-64 (546)
278 PF00448 SRP54: SRP54-type pro 90.7 0.53 1.2E-05 47.4 6.2 34 307-341 4-37 (196)
279 PRK08058 DNA polymerase III su 90.7 1.7 3.7E-05 47.7 10.7 43 289-331 10-55 (329)
280 PRK14963 DNA polymerase III su 90.6 1.7 3.7E-05 50.5 11.0 42 290-331 19-63 (504)
281 PRK14962 DNA polymerase III su 90.6 1.6 3.5E-05 50.2 10.7 24 307-330 39-62 (472)
282 TIGR02768 TraA_Ti Ti-type conj 90.4 1.9 4.2E-05 52.7 11.8 60 283-346 350-409 (744)
283 KOG4443 Putative transcription 90.4 0.071 1.5E-06 60.7 -0.4 96 50-150 17-127 (694)
284 PHA02533 17 large terminase pr 90.3 1.1 2.4E-05 52.4 9.2 55 284-342 58-113 (534)
285 PRK08727 hypothetical protein; 90.3 1.3 2.8E-05 46.1 8.9 28 305-332 42-69 (233)
286 PRK07764 DNA polymerase III su 90.2 2.6 5.7E-05 51.8 12.7 24 307-330 40-63 (824)
287 PRK14950 DNA polymerase III su 90.2 2.4 5.2E-05 50.5 12.1 42 289-330 20-64 (585)
288 PF15446 zf-PHD-like: PHD/FYVE 90.2 0.14 3E-06 48.6 1.3 46 53-98 1-60 (175)
289 KOG1805 DNA replication helica 90.1 1.2 2.5E-05 53.8 9.0 161 285-468 669-831 (1100)
290 TIGR02928 orc1/cdc6 family rep 90.0 1.4 3.1E-05 49.1 9.7 45 286-330 19-66 (365)
291 PRK00149 dnaA chromosomal repl 89.6 1.6 3.4E-05 50.3 9.8 41 305-345 149-190 (450)
292 cd01121 Sms Sms (bacterial rad 89.4 1.7 3.7E-05 48.3 9.4 52 302-354 80-131 (372)
293 PF05876 Terminase_GpA: Phage 89.3 0.47 1E-05 55.8 5.2 167 284-477 15-190 (557)
294 PRK07471 DNA polymerase III su 89.2 2 4.3E-05 47.8 9.8 44 289-332 23-69 (365)
295 PRK13889 conjugal transfer rel 89.0 2.4 5.3E-05 52.9 11.2 60 283-346 344-403 (988)
296 PRK14951 DNA polymerase III su 89.0 2.8 6E-05 49.8 11.2 42 290-331 21-65 (618)
297 KOG0957 PHD finger protein [Ge 88.9 0.25 5.4E-06 54.2 2.3 50 49-98 117-179 (707)
298 COG1200 RecG RecG-like helicas 88.9 6.5 0.00014 46.2 13.7 130 535-704 258-393 (677)
299 TIGR00362 DnaA chromosomal rep 88.9 1.9 4E-05 49.0 9.6 35 306-340 138-173 (405)
300 PRK14948 DNA polymerase III su 88.9 2.8 6E-05 50.1 11.2 43 289-331 20-65 (620)
301 PHA03368 DNA packaging termina 88.8 4.7 0.0001 47.5 12.4 129 303-465 253-389 (738)
302 PF05621 TniB: Bacterial TniB 88.8 5 0.00011 42.8 11.8 45 422-466 139-189 (302)
303 PHA03372 DNA packaging termina 88.6 1.1 2.4E-05 51.8 7.2 130 302-465 201-336 (668)
304 COG3267 ExeA Type II secretory 88.4 1.8 3.9E-05 44.6 7.9 59 293-353 39-104 (269)
305 PHA03333 putative ATPase subun 88.3 3.1 6.7E-05 49.1 10.6 54 288-342 172-225 (752)
306 PRK06871 DNA polymerase III su 88.3 3.2 6.8E-05 45.3 10.3 46 286-331 3-51 (325)
307 PRK00411 cdc6 cell division co 88.2 3.5 7.7E-05 46.5 11.3 46 287-332 35-83 (394)
308 COG2256 MGS1 ATPase related to 88.1 2.2 4.8E-05 46.8 8.7 25 303-327 47-71 (436)
309 PRK14953 DNA polymerase III su 88.1 3.7 8.1E-05 47.5 11.4 42 289-330 20-64 (486)
310 PF15446 zf-PHD-like: PHD/FYVE 88.1 0.88 1.9E-05 43.3 5.0 34 63-96 124-175 (175)
311 PRK14087 dnaA chromosomal repl 88.0 2 4.3E-05 49.4 9.0 47 305-351 142-189 (450)
312 COG1484 DnaC DNA replication p 87.9 1.8 3.9E-05 45.6 8.0 66 287-353 88-153 (254)
313 PF00580 UvrD-helicase: UvrD/R 87.3 1 2.2E-05 48.8 5.9 54 286-345 1-57 (315)
314 PRK04132 replication factor C 87.1 2.8 6E-05 51.4 9.9 54 428-481 630-684 (846)
315 TIGR00595 priA primosomal prot 87.1 4.9 0.00011 46.9 11.6 96 605-704 6-102 (505)
316 PF01695 IstB_IS21: IstB-like 87.0 0.82 1.8E-05 45.3 4.5 47 302-353 45-91 (178)
317 PRK11054 helD DNA helicase IV; 86.9 2.9 6.4E-05 50.5 9.9 86 284-377 195-286 (684)
318 PRK06090 DNA polymerase III su 86.7 6.4 0.00014 42.8 11.5 48 285-332 3-53 (319)
319 KOG0384 Chromodomain-helicase 86.6 0.53 1.2E-05 57.8 3.4 25 131-155 300-324 (1373)
320 PRK05642 DNA replication initi 86.5 7 0.00015 40.6 11.4 35 305-340 46-80 (234)
321 PRK06964 DNA polymerase III su 86.3 4.9 0.00011 44.2 10.5 47 286-332 2-49 (342)
322 PRK14722 flhF flagellar biosyn 86.3 6.7 0.00014 43.6 11.5 40 302-341 135-175 (374)
323 PRK06893 DNA replication initi 86.2 4.6 0.0001 41.8 9.9 27 306-332 41-67 (229)
324 COG0593 DnaA ATPase involved i 86.2 3.7 8.1E-05 45.8 9.5 41 428-468 175-221 (408)
325 PRK04195 replication factor C 86.1 6.5 0.00014 45.7 12.0 42 286-328 18-63 (482)
326 smart00492 HELICc3 helicase su 86.0 4.8 0.0001 38.2 9.0 55 652-709 26-83 (141)
327 PRK14959 DNA polymerase III su 86.0 5.4 0.00012 47.2 11.1 37 294-330 25-64 (624)
328 PF12861 zf-Apc11: Anaphase-pr 85.9 0.29 6.3E-06 41.2 0.6 43 54-98 35-80 (85)
329 TIGR00678 holB DNA polymerase 85.6 8.8 0.00019 38.2 11.3 27 305-331 15-41 (188)
330 PRK05563 DNA polymerase III su 85.6 8.5 0.00018 45.5 12.7 24 307-330 41-64 (559)
331 PRK14969 DNA polymerase III su 85.5 8.9 0.00019 45.0 12.7 41 290-330 21-64 (527)
332 TIGR03345 VI_ClpV1 type VI sec 85.4 3.7 8E-05 51.0 10.0 41 290-330 192-234 (852)
333 KOG1246 DNA-binding protein ju 85.3 0.58 1.3E-05 58.7 3.1 50 49-98 153-204 (904)
334 PRK07133 DNA polymerase III su 85.2 5.5 0.00012 47.9 10.9 41 290-330 23-66 (725)
335 PRK06731 flhF flagellar biosyn 85.2 7.1 0.00015 41.4 10.7 48 303-351 74-125 (270)
336 PRK00771 signal recognition pa 85.2 4.7 0.0001 45.8 9.9 37 305-341 96-132 (437)
337 PRK05896 DNA polymerase III su 85.2 8.3 0.00018 45.5 12.1 40 292-331 23-65 (605)
338 PRK05580 primosome assembly pr 85.1 6.9 0.00015 47.5 12.0 95 606-704 172-267 (679)
339 PRK06647 DNA polymerase III su 84.9 5.2 0.00011 47.2 10.5 24 307-330 41-64 (563)
340 PF06733 DEAD_2: DEAD_2; Inte 84.8 0.44 9.6E-06 47.0 1.4 38 405-442 118-159 (174)
341 COG1198 PriA Primosomal protei 84.6 4.4 9.6E-05 48.7 9.7 110 536-686 195-305 (730)
342 cd00561 CobA_CobO_BtuR ATP:cor 84.6 8.4 0.00018 37.3 9.9 60 422-481 89-152 (159)
343 PRK14954 DNA polymerase III su 84.5 6.4 0.00014 46.9 11.0 41 290-330 21-64 (620)
344 PRK14088 dnaA chromosomal repl 84.5 5.2 0.00011 45.8 10.0 37 305-341 131-168 (440)
345 TIGR00708 cobA cob(I)alamin ad 84.5 1.5 3.3E-05 42.9 4.9 62 421-482 90-155 (173)
346 TIGR00643 recG ATP-dependent D 84.4 9.4 0.0002 46.0 12.6 97 606-705 266-367 (630)
347 KOG0952 DNA/RNA helicase MER3/ 84.3 1 2.2E-05 54.6 4.2 111 302-443 941-1061(1230)
348 PRK05986 cob(I)alamin adenolsy 84.2 8 0.00017 38.5 9.8 63 421-483 108-174 (191)
349 PRK13342 recombination factor 84.2 5.3 0.00011 45.4 9.9 24 305-328 37-60 (413)
350 PF01393 Chromo_shadow: Chromo 83.8 0.33 7.1E-06 38.1 -0.0 26 192-217 3-28 (58)
351 PRK14965 DNA polymerase III su 83.7 13 0.00029 44.1 13.3 41 290-330 21-64 (576)
352 PRK14086 dnaA chromosomal repl 83.5 6 0.00013 46.6 10.0 43 306-348 316-359 (617)
353 KOG1473 Nucleosome remodeling 83.4 0.22 4.8E-06 60.0 -1.6 50 50-99 427-480 (1414)
354 KOG1512 PHD Zn-finger protein 83.4 0.36 7.8E-06 49.2 0.0 46 51-96 258-315 (381)
355 PRK07993 DNA polymerase III su 82.9 10 0.00022 41.6 11.2 47 285-331 2-51 (334)
356 PRK12422 chromosomal replicati 82.9 4.6 0.0001 46.2 8.7 36 305-341 142-177 (445)
357 COG3973 Superfamily I DNA and 82.9 2.3 4.9E-05 48.9 6.0 62 285-351 212-278 (747)
358 PF00004 AAA: ATPase family as 82.8 1.6 3.5E-05 40.2 4.3 34 308-345 2-35 (132)
359 PRK11823 DNA repair protein Ra 82.7 3.7 8E-05 47.1 7.9 54 301-355 77-130 (446)
360 PRK12727 flagellar biosynthesi 82.4 15 0.00033 42.5 12.4 38 303-340 349-387 (559)
361 cd01120 RecA-like_NTPases RecA 81.9 8.8 0.00019 36.6 9.3 37 307-344 2-38 (165)
362 COG1419 FlhF Flagellar GTP-bin 81.8 12 0.00026 41.6 10.8 56 429-485 282-342 (407)
363 smart00300 ChSh Chromo Shadow 81.5 0.97 2.1E-05 36.0 1.8 31 192-225 7-37 (61)
364 PRK08699 DNA polymerase III su 81.0 14 0.00031 40.4 11.3 46 286-331 2-48 (325)
365 PRK10917 ATP-dependent DNA hel 80.7 10 0.00022 46.1 11.1 97 606-705 292-393 (681)
366 PRK06835 DNA replication prote 80.7 4.3 9.2E-05 44.4 7.1 49 284-332 159-211 (329)
367 PRK13826 Dtr system oriT relax 80.4 12 0.00027 47.2 11.8 58 284-345 380-437 (1102)
368 PTZ00112 origin recognition co 80.3 8.2 0.00018 47.1 9.5 44 286-329 759-806 (1164)
369 PRK07952 DNA replication prote 79.9 6.2 0.00013 41.2 7.7 62 288-354 79-144 (244)
370 PRK09376 rho transcription ter 79.8 2.6 5.6E-05 46.7 5.0 31 301-331 166-196 (416)
371 PRK12724 flagellar biosynthesi 79.7 9.8 0.00021 42.8 9.5 22 307-328 226-247 (432)
372 cd01124 KaiC KaiC is a circadi 79.3 4.7 0.0001 39.9 6.5 48 307-355 2-49 (187)
373 TIGR02639 ClpA ATP-dependent C 79.2 12 0.00026 46.0 11.1 29 303-331 202-230 (731)
374 TIGR03346 chaperone_ClpB ATP-d 78.7 6.3 0.00014 49.3 8.6 39 292-330 180-220 (852)
375 COG0470 HolB ATPase involved i 78.5 13 0.00028 40.4 10.3 30 303-332 22-52 (325)
376 PRK13341 recombination factor 78.4 5.5 0.00012 48.4 7.7 25 304-328 52-76 (725)
377 PRK10865 protein disaggregatio 78.3 7.8 0.00017 48.3 9.2 38 293-330 186-225 (857)
378 CHL00095 clpC Clp protease ATP 78.2 8.3 0.00018 48.0 9.4 28 303-330 199-226 (821)
379 KOG4628 Predicted E3 ubiquitin 78.1 1.4 3.1E-05 47.6 2.4 44 52-98 230-276 (348)
380 PRK05973 replicative DNA helic 78.1 5.8 0.00013 41.1 6.8 58 297-355 57-114 (237)
381 cd03115 SRP The signal recogni 77.8 11 0.00024 36.8 8.6 35 307-341 3-37 (173)
382 TIGR03689 pup_AAA proteasome A 77.6 6.5 0.00014 45.5 7.7 29 302-330 214-242 (512)
383 PRK10867 signal recognition pa 77.5 11 0.00024 42.8 9.3 35 307-341 103-137 (433)
384 KOG1244 Predicted transcriptio 77.4 0.58 1.3E-05 47.6 -0.8 48 50-97 223-283 (336)
385 CHL00206 ycf2 Ycf2; Provisiona 77.0 6.3 0.00014 51.8 7.8 43 302-348 1628-1670(2281)
386 PRK07399 DNA polymerase III su 76.6 30 0.00065 37.7 12.1 43 290-332 9-54 (314)
387 PF03354 Terminase_1: Phage Te 76.2 16 0.00034 42.4 10.5 45 420-466 115-162 (477)
388 PRK14873 primosome assembly pr 76.2 13 0.00028 44.8 9.9 93 606-702 170-264 (665)
389 KOG1133 Helicase of the DEAD s 76.2 4.6 0.0001 47.1 5.8 45 283-327 13-57 (821)
390 PRK06305 DNA polymerase III su 76.1 19 0.00042 41.3 11.0 42 290-331 22-66 (451)
391 COG4626 Phage terminase-like p 76.0 10 0.00022 43.7 8.4 59 284-342 60-127 (546)
392 PF04364 DNA_pol3_chi: DNA pol 75.8 12 0.00027 35.2 7.8 79 610-706 15-97 (137)
393 PF13901 DUF4206: Domain of un 75.7 2 4.4E-05 43.4 2.6 38 51-97 152-197 (202)
394 TIGR02640 gas_vesic_GvpN gas v 75.7 7 0.00015 41.3 6.9 49 288-340 5-53 (262)
395 PF11793 FANCL_C: FANCL C-term 75.5 0.32 7E-06 39.9 -2.6 46 52-97 3-63 (70)
396 TIGR02397 dnaX_nterm DNA polym 75.4 22 0.00047 39.4 11.1 42 290-331 19-63 (355)
397 PRK11034 clpA ATP-dependent Cl 75.2 5.9 0.00013 48.4 6.8 29 303-331 206-234 (758)
398 KOG0740 AAA+-type ATPase [Post 74.8 4.4 9.5E-05 45.4 5.1 48 304-355 186-233 (428)
399 TIGR00959 ffh signal recogniti 74.7 12 0.00025 42.6 8.6 35 306-340 101-135 (428)
400 PRK10919 ATP-dependent DNA hel 74.7 5 0.00011 48.7 6.1 65 285-355 2-70 (672)
401 cd00034 ChSh Chromo Shadow Dom 74.7 0.97 2.1E-05 35.0 -0.0 29 194-225 2-31 (54)
402 KOG3612 PHD Zn-finger protein 74.5 2.1 4.6E-05 48.1 2.5 50 48-97 57-107 (588)
403 TIGR01074 rep ATP-dependent DN 74.4 11 0.00023 45.9 8.9 65 286-356 2-70 (664)
404 PRK14971 DNA polymerase III su 73.6 42 0.00091 40.2 13.3 41 290-330 22-65 (614)
405 COG1474 CDC6 Cdc6-related prot 73.5 20 0.00044 39.8 10.0 48 285-332 20-70 (366)
406 CHL00095 clpC Clp protease ATP 73.3 1.8E+02 0.0039 36.4 19.3 43 289-331 513-566 (821)
407 TIGR00416 sms DNA repair prote 73.0 8.1 0.00018 44.4 6.9 53 302-355 92-144 (454)
408 PF11717 Tudor-knot: RNA bindi 73.0 1.4 3E-05 34.2 0.5 23 131-153 31-53 (55)
409 KOG1807 Helicases [Replication 72.7 8.9 0.00019 45.4 6.9 90 285-380 378-473 (1025)
410 KOG2543 Origin recognition com 72.6 95 0.0021 34.3 14.1 142 284-469 8-161 (438)
411 COG0541 Ffh Signal recognition 72.3 6.8 0.00015 43.7 5.7 58 307-365 103-160 (451)
412 PF00308 Bac_DnaA: Bacterial d 72.2 30 0.00064 35.5 10.2 37 428-464 97-137 (219)
413 TIGR00767 rho transcription te 72.1 17 0.00036 40.7 8.7 31 301-331 165-195 (415)
414 PRK08939 primosomal protein Dn 72.1 7.2 0.00016 42.3 5.9 46 293-339 143-190 (306)
415 PRK06921 hypothetical protein; 72.0 14 0.00029 39.3 7.9 41 303-343 116-156 (266)
416 TIGR01075 uvrD DNA helicase II 71.9 7.5 0.00016 47.7 6.7 66 285-356 4-73 (715)
417 TIGR01425 SRP54_euk signal rec 71.7 25 0.00055 39.8 10.3 34 307-341 103-136 (429)
418 PF14061 Mtf2_C: Polycomb-like 71.6 1.5 3.3E-05 32.4 0.4 22 196-217 27-49 (50)
419 COG1066 Sms Predicted ATP-depe 71.4 15 0.00033 40.7 8.0 50 305-356 94-143 (456)
420 PRK05564 DNA polymerase III su 71.4 23 0.00049 38.6 9.8 40 292-331 11-53 (313)
421 PRK14970 DNA polymerase III su 71.2 27 0.00059 38.9 10.6 41 290-330 22-65 (367)
422 PF06745 KaiC: KaiC; InterPro 70.9 6.2 0.00014 40.6 5.0 55 302-356 17-71 (226)
423 TIGR03499 FlhF flagellar biosy 70.8 18 0.0004 38.7 8.7 38 304-341 194-232 (282)
424 cd01128 rho_factor Transcripti 70.8 20 0.00043 37.6 8.6 27 301-327 13-39 (249)
425 PF06068 TIP49: TIP49 C-termin 70.7 6.3 0.00014 43.2 5.0 41 303-345 49-89 (398)
426 KOG0738 AAA+-type ATPase [Post 70.5 16 0.00035 40.1 7.8 47 305-355 246-292 (491)
427 COG2812 DnaX DNA polymerase II 70.1 13 0.00028 43.0 7.6 42 290-331 21-65 (515)
428 PRK10416 signal recognition pa 69.6 45 0.00098 36.4 11.4 34 306-340 116-149 (318)
429 CHL00176 ftsH cell division pr 69.4 17 0.00037 43.6 8.8 25 304-328 216-240 (638)
430 PRK11773 uvrD DNA-dependent he 69.2 7.9 0.00017 47.5 6.1 52 285-342 9-63 (721)
431 KOG2028 ATPase related to the 69.1 20 0.00043 39.0 8.0 39 430-470 224-262 (554)
432 KOG0780 Signal recognition par 68.9 12 0.00025 41.1 6.3 112 307-484 104-215 (483)
433 cd00730 rubredoxin Rubredoxin; 68.9 2.7 5.9E-05 31.9 1.3 34 65-99 3-44 (50)
434 PRK12377 putative replication 68.3 15 0.00032 38.5 7.1 44 304-348 101-144 (248)
435 PF00437 T2SE: Type II/IV secr 67.9 8.5 0.00018 40.9 5.4 45 295-340 118-162 (270)
436 PF13639 zf-RING_2: Ring finge 67.9 0.62 1.4E-05 34.2 -2.4 39 53-96 2-44 (44)
437 TIGR03877 thermo_KaiC_1 KaiC d 67.8 16 0.00035 38.0 7.3 54 301-355 18-71 (237)
438 PRK13833 conjugal transfer pro 67.6 13 0.00028 40.6 6.6 46 282-330 125-170 (323)
439 PRK10865 protein disaggregatio 67.4 3.3E+02 0.0071 34.3 19.6 25 306-330 600-624 (857)
440 TIGR02782 TrbB_P P-type conjug 67.2 13 0.00028 40.2 6.6 43 285-330 116-158 (299)
441 PRK12726 flagellar biosynthesi 66.8 30 0.00065 38.5 9.2 48 304-352 206-257 (407)
442 TIGR01243 CDC48 AAA family ATP 66.5 12 0.00025 46.1 6.9 42 303-348 486-527 (733)
443 PF13771 zf-HC5HC2H: PHD-like 66.5 2.9 6.3E-05 36.1 1.2 32 49-80 34-68 (90)
444 TIGR03880 KaiC_arch_3 KaiC dom 66.4 17 0.00036 37.4 7.1 53 303-356 15-67 (224)
445 PRK08533 flagellar accessory p 65.5 19 0.00041 37.3 7.2 52 302-354 22-73 (230)
446 PF06564 YhjQ: YhjQ protein; 65.4 9.9 0.00022 39.5 5.0 36 309-345 7-44 (243)
447 cd00984 DnaB_C DnaB helicase C 65.3 8.7 0.00019 39.9 4.7 45 300-344 9-53 (242)
448 COG0467 RAD55 RecA-superfamily 65.2 17 0.00037 38.4 7.0 53 302-355 21-73 (260)
449 TIGR00064 ftsY signal recognit 65.1 44 0.00095 35.6 10.0 34 306-340 74-107 (272)
450 PF05127 Helicase_RecD: Helica 64.5 6.1 0.00013 38.9 3.1 34 309-342 2-35 (177)
451 PHA00012 I assembly protein 64.5 18 0.00039 39.1 6.7 25 308-332 5-29 (361)
452 PRK14712 conjugal transfer nic 64.3 41 0.00089 44.5 11.1 59 285-345 835-896 (1623)
453 PF13832 zf-HC5HC2H_2: PHD-zin 64.3 3.3 7.2E-05 37.3 1.2 31 50-80 54-87 (110)
454 PF12846 AAA_10: AAA-like doma 64.3 13 0.00028 39.8 6.0 45 304-349 1-45 (304)
455 KOG1942 DNA helicase, TBP-inte 64.2 12 0.00025 39.4 5.1 34 295-328 55-88 (456)
456 COG1435 Tdk Thymidine kinase [ 64.1 27 0.00058 34.8 7.4 34 429-465 83-118 (201)
457 PRK06995 flhF flagellar biosyn 63.9 46 0.001 38.4 10.4 33 307-339 259-292 (484)
458 KOG1081 Transcription factor N 63.8 4.5 9.7E-05 46.3 2.3 46 50-98 88-133 (463)
459 PRK14723 flhF flagellar biosyn 63.8 38 0.00083 41.2 10.1 36 306-341 187-223 (767)
460 TIGR03345 VI_ClpV1 type VI sec 63.8 3.6E+02 0.0077 33.9 18.9 24 307-330 599-622 (852)
461 PRK06646 DNA polymerase III su 63.7 14 0.00031 35.5 5.4 40 605-644 10-49 (154)
462 COG1224 TIP49 DNA helicase TIP 63.7 9.1 0.0002 41.5 4.4 39 302-342 63-101 (450)
463 cd01129 PulE-GspE PulE/GspE Th 63.7 16 0.00034 38.8 6.3 44 285-330 63-106 (264)
464 PRK07276 DNA polymerase III su 63.6 46 0.00099 35.7 9.8 47 285-332 2-50 (290)
465 PRK14721 flhF flagellar biosyn 63.5 58 0.0013 36.9 11.0 55 428-483 269-328 (420)
466 COG1773 Rubredoxin [Energy pro 63.2 6.4 0.00014 30.3 2.3 12 88-99 35-46 (55)
467 COG2842 Uncharacterized ATPase 63.0 12 0.00026 39.6 5.1 54 294-353 84-137 (297)
468 PF05191 ADK_lid: Adenylate ki 62.4 5.5 0.00012 27.9 1.7 28 64-97 2-29 (36)
469 COG0464 SpoVK ATPases of the A 62.3 11 0.00025 43.9 5.4 67 285-355 249-323 (494)
470 PRK13894 conjugal transfer ATP 62.1 22 0.00048 38.7 7.2 43 284-329 131-173 (319)
471 PRK13709 conjugal transfer nic 62.1 43 0.00092 44.9 10.8 60 284-345 966-1028(1747)
472 COG0552 FtsY Signal recognitio 61.8 30 0.00064 37.5 7.8 53 308-361 143-195 (340)
473 PF01443 Viral_helicase1: Vira 61.8 11 0.00023 38.9 4.6 41 428-471 62-102 (234)
474 KOG4218 Nuclear hormone recept 61.7 4 8.6E-05 43.1 1.3 65 47-111 11-94 (475)
475 PRK08760 replicative DNA helic 61.6 23 0.0005 41.0 7.6 62 294-355 219-280 (476)
476 TIGR03881 KaiC_arch_4 KaiC dom 61.0 28 0.0006 35.8 7.5 53 301-354 17-69 (229)
477 TIGR00580 mfd transcription-re 60.6 48 0.0011 41.7 10.6 96 606-704 482-582 (926)
478 PRK05728 DNA polymerase III su 60.5 18 0.00038 34.4 5.4 82 606-706 11-96 (142)
479 PRK09183 transposase/IS protei 60.3 9 0.0002 40.5 3.8 38 302-340 100-137 (259)
480 PF05970 PIF1: PIF1-like helic 60.2 19 0.00042 40.1 6.6 61 285-346 1-63 (364)
481 KOG0739 AAA+-type ATPase [Post 59.6 37 0.0008 36.0 7.7 48 305-356 167-214 (439)
482 COG1444 Predicted P-loop ATPas 59.6 91 0.002 37.9 12.1 59 285-343 211-271 (758)
483 TIGR01073 pcrA ATP-dependent D 59.5 12 0.00027 45.9 5.3 52 285-342 4-58 (726)
484 PRK05748 replicative DNA helic 59.1 21 0.00046 41.0 6.8 61 292-352 191-251 (448)
485 TIGR01243 CDC48 AAA family ATP 58.4 21 0.00045 44.0 7.0 37 302-342 210-246 (733)
486 TIGR02655 circ_KaiC circadian 58.0 21 0.00045 41.6 6.5 91 303-435 262-360 (484)
487 PF13481 AAA_25: AAA domain; P 56.9 28 0.0006 34.6 6.5 54 303-356 31-93 (193)
488 PRK13900 type IV secretion sys 56.7 21 0.00045 39.2 5.9 34 295-328 151-184 (332)
489 PRK09087 hypothetical protein; 56.4 58 0.0012 33.6 8.8 36 430-465 89-125 (226)
490 KOG0737 AAA+-type ATPase [Post 56.4 12 0.00025 40.9 3.7 51 302-356 125-175 (386)
491 PF01935 DUF87: Domain of unkn 56.3 18 0.00038 37.3 5.1 39 305-343 24-62 (229)
492 PHA00350 putative assembly pro 56.1 23 0.0005 39.7 6.1 17 308-324 5-21 (399)
493 PRK06904 replicative DNA helic 56.1 30 0.00066 40.0 7.4 60 293-352 210-269 (472)
494 PRK13531 regulatory ATPase Rav 55.9 16 0.00035 41.8 5.0 39 291-329 26-64 (498)
495 PF00158 Sigma54_activat: Sigm 55.9 48 0.001 32.4 7.8 54 294-348 12-65 (168)
496 PRK07414 cob(I)yrinic acid a,c 55.9 89 0.0019 30.8 9.4 59 421-479 108-170 (178)
497 TIGR00764 lon_rel lon-related 55.8 22 0.00047 42.5 6.3 43 289-331 22-64 (608)
498 PF07649 C1_3: C1-like domain; 55.7 4.7 0.0001 26.9 0.4 25 53-77 2-29 (30)
499 TIGR02760 TraI_TIGR conjugativ 55.4 78 0.0017 43.4 11.9 60 284-345 1018-1080(1960)
500 TIGR03600 phage_DnaB phage rep 55.2 31 0.00067 39.3 7.3 57 293-349 183-239 (421)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.9e-151 Score=1287.69 Aligned_cols=672 Identities=49% Similarity=0.852 Sum_probs=607.6
Q ss_pred hhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhccCCC--CchhhhhcCCccchhhhHhhhhcCCc
Q 002937 128 IFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDD 205 (864)
Q Consensus 128 ~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~verIi~~~~~~~ 205 (864)
....+|||||+|+||+||||++++.|... ..++-+|++||.++.....- -.++...+.++|.+|||||++.....
T Consensus 223 ~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d 299 (1373)
T KOG0384|consen 223 EEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVDNFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD 299 (1373)
T ss_pred chhhhhheeeccccceeccccchHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC
Confidence 34579999999999999999999998643 23444699999987543211 12344568899999999999986555
Q ss_pred cceeeeeeccccccccccccCCCCCc-cHHHHHHHHHHhhhccccccCccCCCCcccccccCCCccccccccCCCCCCCC
Q 002937 206 EKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGG 284 (864)
Q Consensus 206 ~~~ylVKW~~l~y~~~tWe~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 284 (864)
.+|||||+||||++||||.+.++.. .+.+++.|..+..... .+.......+....|.++..||.|+.|.
T Consensus 300 -~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~ 369 (1373)
T KOG0384|consen 300 -PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGN 369 (1373)
T ss_pred -ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcccc---------CCCCccccCccchhHHHhhcCccccccc
Confidence 9999999999999999999998865 5667888876532211 1112223345567899999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEeccccHHHHHHHHHHHcCCCeEE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--~~~~LIV~P~sll~qW~~E~~~~~p~~~~~ 362 (864)
+||+||++|+|||.+.|+++.+||||||||||||+|+++|+.+|+... .||+|||||+|++.+|++||..|+ +++++
T Consensus 370 ~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i 448 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVI 448 (1373)
T ss_pred hhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhcee
Confidence 999999999999999999999999999999999999999999998754 689999999999999999999999 99999
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccC
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn 442 (864)
+|+|+..+|..|++|||++.... ...+|+++||||+++.+|...|..++|.+++|||||||||
T Consensus 449 ~y~g~~~sr~~i~~ye~~~~~~~-----------------~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 449 VYHGNLESRQLIRQYEFYHSSNT-----------------KKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred eeecchhHHHHHHHHHheecCCc-----------------cccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCc
Confidence 99999999999999999976642 2468999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHh
Q 002937 443 KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKK 522 (864)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~ 522 (864)
..++++..|..+...||||+||||+||++.|||+|+|||.|+.|.+..+|...| +..++.++..|+..|+|+|+||.++
T Consensus 512 ~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 512 DESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred hHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 7888999999999999999999999
Q ss_pred hHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhCcccccCCCCCCccC------
Q 002937 523 DVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCHPYMLEGVEPDIED------ 595 (864)
Q Consensus 523 dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~------ 595 (864)
||.+.||++.+.++.|+||+.|+++|++|+++|+..|.++. ++..+++|++|+||||||||||+.+.+.....
T Consensus 591 dvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~ 670 (1373)
T KOG0384|consen 591 DVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKM 670 (1373)
T ss_pred hhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999998764 44578999999999999999999988765433
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCC
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~ 675 (864)
.++.+..++.+|||+.+|++||.+|++.||||||||||+.|||+|++||..+||+|.||||++.++.|+++|++||++++
T Consensus 671 ~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 671 RDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred hHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHH
Q 002937 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHL 755 (864)
Q Consensus 676 ~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~ 755 (864)
.+||||+||||||.||||++||||||||+||||++++||++|||||||++.|.||||||++||||.|+++|++||.|+++
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~a 830 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHA 830 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh-------hcCCCHHHHHHHHhhchhhhcccccccCCCcccCCCCHHHHHHHhcCCCCCCccccCCccchhhhhc
Q 002937 756 VVGRLK-------AQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLK 828 (864)
Q Consensus 756 v~~~~~-------~~~~~~~~l~~ll~~g~~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~ 828 (864)
|++.|. .+.++++||.+||++||+++|.++++++. .+++++||+||.|+...+++.++ -..++++++
T Consensus 831 VIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls 904 (1373)
T KOG0384|consen 831 VIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEES-----KFCEMDIDEILERAETRITEESD-FMKASELLS 904 (1373)
T ss_pred HHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccc-----cccccCHHHHHhhcccccccccc-cchhHHHHh
Confidence 998775 35689999999999999999999876654 46789999999999877666443 356889999
Q ss_pred ccccchhhh
Q 002937 829 AFKVLSSII 837 (864)
Q Consensus 829 ~~~~~~~~~ 837 (864)
+|+||++.+
T Consensus 905 ~fkvad~~~ 913 (1373)
T KOG0384|consen 905 QFKVADIKA 913 (1373)
T ss_pred hcccccccc
Confidence 999999987
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.6e-116 Score=962.53 Aligned_cols=504 Identities=48% Similarity=0.806 Sum_probs=467.2
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEeccccHHHHHHHHH
Q 002937 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 276 ~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~sll~qW~~E~~ 353 (864)
.+|.++.++.|||||++|+|||+..|.++.|||||||||||||+|+|+++.++... -.||+||+||+|++.||.+||.
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999863 3689999999999999999999
Q ss_pred HHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEE
Q 002937 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (864)
Q Consensus 354 ~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vI 433 (864)
+|+|++++++|+|++..|..++..-+ ....|+|+||||+++.++...|+.++|.++|
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylv 294 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLV 294 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEE
Confidence 99999999999999999987765422 1237999999999999999999999999999
Q ss_pred ecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhc---cchHHHHHHHHH
Q 002937 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLHR 510 (864)
Q Consensus 434 vDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~---~~~~~~~~~L~~ 510 (864)
||||||+||.+|++.+.++.+.+.+||||||||+|||+.|||+||+|+.|+.|.+.+.|..+|.. ....+.+.+||.
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999965 234568999999
Q ss_pred HHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhCcccccCCC
Q 002937 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~-~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
+|+||++||.|.+|.+.|||+.+.+++|.||++|+++|+.++.+....++..+. ....+.|++|+||||||||||+++.
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 999999999999999999999999999999999999999999999888876553 6788999999999999999999998
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
++... ......++..||||.+|++||.+++++||||||||||+.|||+|++|+..+||.|+||||+++.++|..+|+.
T Consensus 455 ePg~p--yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 455 EPGPP--YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred CCCCC--CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 87432 3344789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K 749 (864)
||++++..|+||+||||||.||||++||+||+||+||||+.++||++|||||||+++|.||||+|++||||+|++++..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhh-----hhcCCCHHHHHHHHhhchhhhcccccccCCCcccCCCCHHHHHHHhcCCCCCC
Q 002937 750 MVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGD 813 (864)
Q Consensus 750 ~~l~~~v~~~~-----~~~~~~~~~l~~ll~~g~~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 813 (864)
+.|++.|++.. +....+.+++-.|+++|+..+|+..+.+ .++ +||.||.++....
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt 672 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKT 672 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhc
Confidence 99999999765 2334678999999999999999876533 223 9999999987443
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5.1e-94 Score=855.52 Aligned_cols=504 Identities=46% Similarity=0.777 Sum_probs=457.5
Q ss_pred cccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEeccccHHHHH
Q 002937 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 272 ~~~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~sll~qW~ 349 (864)
..+..+|..+. ++|||||++|++||...+.++.||||||+||||||+|+|+++.++... ..+|+|||||.+++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 34567888888 799999999999999999999999999999999999999999988653 356999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcce
Q 002937 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (864)
Q Consensus 350 ~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w 429 (864)
+||.+|+|.++++.|+|+...|..+....+ ...+++|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876554322 123689999999999999999999999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhcc---chHHHHH
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~---~~~~~~~ 506 (864)
++|||||||++||..|++++++..+++.+||+|||||++|++.|||+|++||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643 3356688
Q ss_pred HHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 507 ~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
.|+.+++|+++||+|.++...|||+.+.+++|.||+.|+++|+.++.+....+..+ +....+++++++||+||+||+++
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999887776543 34557899999999999999999
Q ss_pred CCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
.+.++.... .....++..|+|+.+|+++|..+...|+||||||||+.++++|+++|...|++|++|+|+++..+|+++
T Consensus 452 ~~~ep~~~~--~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPY--TTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcc--cchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 876654322 123567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHH
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~ 746 (864)
|++||++++..++||+||+|||+||||+.||+||+||++|||+.++||+||+|||||+++|.||+|+++|||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhhhhh---hcCCCHHHHHHHHhhchhhhcccccccCCCcccCCCCHHHHHHHhcCCC
Q 002937 747 KKKMVLEHLVVGRLK---AQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (864)
Q Consensus 747 ~~K~~l~~~v~~~~~---~~~~~~~~l~~ll~~g~~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 810 (864)
.+|+.|+..|++... ...++.++|.+|+++|+..+|...+ ..++|++||.||+|+.
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~--------~~~~~~did~il~~~~ 668 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD--------STITDEDIDRIIAKGE 668 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccC--------CCCCHHHHHHHHHhcH
Confidence 999999999996542 3468899999999999999995432 1367999999999985
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-93 Score=783.88 Aligned_cols=463 Identities=44% Similarity=0.669 Sum_probs=405.1
Q ss_pred ccCCCCC-CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHH
Q 002937 275 EHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 275 ~~~p~~~-~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~ 352 (864)
..||..+ +|.+|+|||+.|||||.-.+.++-+||||||||||||+|+|+|+++|...+ .||+|||||.|++.||.+||
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREF 467 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHH
Confidence 3466655 678999999999999999999999999999999999999999999999865 67999999999999999999
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh---cccccCCcce
Q 002937 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKW 429 (864)
Q Consensus 353 ~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~---~~~~l~~~~w 429 (864)
.+|+|.+.|..|+|+...|..++..- .....+|+|++|||..+.. +..+|+..+|
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~lR~~i----------------------~~~~~~ydVllTTY~la~~~kdDRsflk~~~~ 525 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERRELRERI----------------------KKNKDDYDVLLTTYNLAASSKDDRSFLKNQKF 525 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHHHHHH----------------------hccCCCccEEEEEeecccCChHHHHHHHhccc
Confidence 99999999999999999998887641 1123489999999999854 6778999999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCCh-HHHHHHHhccch-------
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDINQ------- 501 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~-~~f~~~~~~~~~------- 501 (864)
+++|.||+|.|||..|.+++.|+.+++++||||||||+|||+.||++||.|+.|..|.+. +++..-|....+
T Consensus 526 n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~ 605 (941)
T KOG0389|consen 526 NYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIEN 605 (941)
T ss_pred cEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999754 555555543322
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHH
Q 002937 502 ----EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVME 575 (864)
Q Consensus 502 ----~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~--~~~~~~~~~~ 575 (864)
++.+.+...+++||+|||.|++|+++||||..++.+|+|+..|+.+|..+.+.....++....+ ..+ .+++|+
T Consensus 606 ~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmq 684 (941)
T KOG0389|consen 606 ALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQ 684 (941)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHH
Confidence 4578899999999999999999999999999999999999999999999988763333322222 112 569999
Q ss_pred HHHHhCcccccCCCCCCc---------------cC--chHHH---------------------------HHhhhcccHHH
Q 002937 576 LRKLCCHPYMLEGVEPDI---------------ED--TNESF---------------------------KQLLESSGKLQ 611 (864)
Q Consensus 576 lrk~~~hp~l~~~~~~~~---------------~~--~~~~~---------------------------~~l~~~s~Kl~ 611 (864)
|||+++||-|+.....+. .. ..-.+ ..++-.|||..
T Consensus 685 lRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r 764 (941)
T KOG0389|consen 685 LRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCR 764 (941)
T ss_pred HHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHh
Confidence 999999999875432110 00 00000 11244699999
Q ss_pred HHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCc
Q 002937 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (864)
Q Consensus 612 ~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~Gi 691 (864)
.|.+||.+++..|+||||||||+.|||||+.+|...|++|.|+||+|.-..||.+|+.||.+. ..||||+||+|||.||
T Consensus 765 ~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~-difVFLLSTKAGG~GI 843 (941)
T KOG0389|consen 765 KLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDK-DIFVFLLSTKAGGFGI 843 (941)
T ss_pred HHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCC-ceEEEEEeeccCccee
Confidence 999999999999999999999999999999999999999999999999999999999999854 5688999999999999
Q ss_pred CCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhh
Q 002937 692 NLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (864)
Q Consensus 692 nL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~ 761 (864)
||++||+||++|.++||.++.||.+||||+||+|+|+|||||+++||||.|++.+++|+.|+..+.+..+
T Consensus 844 NLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 844 NLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred cccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999976543
No 5
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-92 Score=789.32 Aligned_cols=508 Identities=44% Similarity=0.713 Sum_probs=446.8
Q ss_pred cccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEeccccHHHHH
Q 002937 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 272 ~~~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~sll~qW~ 349 (864)
.....||..+.||+|++||+.|+.||...+.++-+||||||||||||+|+|+++.++++. ..||+|||||++++.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 356789999999999999999999999999999999999999999999999999999875 367999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcce
Q 002937 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (864)
Q Consensus 350 ~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w 429 (864)
.||.+|+|.+..+.|.|.+..|..+..- ....+|+|++|||+.+.++...|.++.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999866532 1236899999999999999999999999
Q ss_pred eEEEecccccccCcccHHHHHHH-hcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc--------
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------- 500 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~-~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~-------- 500 (864)
.++||||+||+||..+++...+. .+.+.+|+||||||+||++.|||+||+|+-|.+|.+...|..+|...-
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 678999999999999999999999999999999999999999985321
Q ss_pred --h---HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHH--hcCCCcchHHHHH
Q 002937 501 --Q---EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (864)
Q Consensus 501 --~---~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~--~~~~~~~~~~~~~ 573 (864)
. --.+.+||++|+||++||.|++|...||.+.+.++.|.||+.|+.+|..+.....-... .+.+....+.|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 1 13578999999999999999999999999999999999999999999988654322221 2445567899999
Q ss_pred HHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEE
Q 002937 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (864)
Q Consensus 574 ~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~ 653 (864)
|+|||+|||||++..++......... ..++..+||+.+|+++|.+|++.||+||.|+|++.++++|++||..++++|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998876654433222 68899999999999999999999999999999999999999999999999999
Q ss_pred EeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEE
Q 002937 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (864)
Q Consensus 654 i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 733 (864)
+||++..++|-..++.||.++++.|+||+||+|||.|+||+.||+||+||++|||+.+.||.+|+|||||+++|.|+|++
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHhhhHHHHHhhhhh-hcCCCHHHHHHHHhhchhhhcccccccCCCcccCCCCHHHHHHHhcCCCC
Q 002937 734 TRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQV 811 (864)
Q Consensus 734 ~~~TiEe~i~~~~~~K~~l~~~v~~~~~-~~~~~~~~l~~ll~~g~~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 811 (864)
+.+++||.|++.+..|+..+..|+.... .+.-+.++=+.+|. .+...++++.+ .-.-+++.|..++.|+..
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larsee 907 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSEE 907 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcchH
Confidence 9999999999999999999999985432 23334444333332 22232222211 224567789999988753
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.5e-90 Score=761.34 Aligned_cols=487 Identities=37% Similarity=0.627 Sum_probs=413.5
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEeccccHHHHHHHH
Q 002937 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 275 ~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--~~~~LIV~P~sll~qW~~E~ 352 (864)
-..|.++. ..|+|||++||+||...+.++.||||+||||||||+|+|+|++.|...+ .+|+|||||.+++.||.+||
T Consensus 196 ~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~ 274 (923)
T KOG0387|consen 196 FKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEF 274 (923)
T ss_pred ccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHH
Confidence 34455544 5799999999999999999999999999999999999999999998762 47999999999999999999
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEE
Q 002937 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432 (864)
Q Consensus 353 ~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~v 432 (864)
++|+|.+.+.+|+|+..... ++.+... ..+...+ .......-+|+||||+.+......+..+.|+++
T Consensus 275 ~~w~p~~rv~ilh~t~s~~r----~~~~~~~------~~~~~~L---~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ 341 (923)
T KOG0387|consen 275 QTWWPPFRVFILHGTGSGAR----YDASHSS------HKKDKLL---IRKVATDGGILITTYDGFRIQGDDLLGILWDYV 341 (923)
T ss_pred HHhCcceEEEEEecCCcccc----cccchhh------hhhhhhh---eeeecccCcEEEEehhhhcccCcccccccccEE
Confidence 99999999999999876321 0000000 0000000 011224567999999999999999999999999
Q ss_pred EecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccch-----------
Q 002937 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ----------- 501 (864)
Q Consensus 433 IvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~----------- 501 (864)
|+||+|++||++++.+.+++.+++.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|.....
T Consensus 342 ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q 421 (923)
T KOG0387|consen 342 ILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ 421 (923)
T ss_pred EecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHhhHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 002937 502 ----EEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (864)
Q Consensus 502 ----~~~~~~L~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~l 576 (864)
..-...|+.+|.||+|||+|+||.. .||.|.+.+++|.||+.|+..|..++..... ..--......+..+.-|
T Consensus 422 v~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--~~i~ng~~~~l~Gi~iL 499 (923)
T KOG0387|consen 422 VQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--NKILNGKRNCLSGIDIL 499 (923)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--HHHHcCCccceechHHH
Confidence 2334569999999999999999998 9999999999999999999999999875321 11112223345556789
Q ss_pred HHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh-hCCCcEEEEe
Q 002937 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKWQYERID 655 (864)
Q Consensus 577 rk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~-~~g~~~~~i~ 655 (864)
|++||||-|+..-..... ........++.|||+.++.++|.....+|+|||+|||...|||+|+.+|. ..||+|.|+|
T Consensus 500 rkICnHPdll~~~~~~~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 500 RKICNHPDLLDRRDEDEK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred HhhcCCcccccCcccccc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 999999999976421111 01111255678999999999999999999999999999999999999999 7999999999
Q ss_pred ccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 656 G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
|.++...|+.+|++||++.+ .+|||++|++||.|+||+.||.||||||+|||+.+.||..|++||||++.|.||||++.
T Consensus 579 GtT~~~~R~~lVd~Fne~~s-~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDES-IFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CCCccchhhHHHHhhcCCCc-eEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 99999999999999998655 56799999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhHHHHHhh-hhhhcCCCHHHHHHHHhhchh
Q 002937 736 GSIEERMMQMTKKKMVLEHLVVG-RLKAQNINQEELDDIIRYGSK 779 (864)
Q Consensus 736 ~TiEe~i~~~~~~K~~l~~~v~~-~~~~~~~~~~~l~~ll~~g~~ 779 (864)
|||||.||.++--|..|.+.++. .....-+...++.++|..+..
T Consensus 658 gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 658 GTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 99999999999999999999884 444566788889999887764
No 7
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=4.9e-90 Score=773.11 Aligned_cols=473 Identities=40% Similarity=0.712 Sum_probs=419.2
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEeccccHHHHHHHHHHHcC
Q 002937 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAP 357 (864)
Q Consensus 280 ~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~sll~qW~~E~~~~~p 357 (864)
++-.|.||.||..|++||..++.++-|||||||||||||+|+|+++++|..+ .+||+|||||.+++.||+-||++|+|
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 3334799999999999999999999999999999999999999999999753 57899999999999999999999999
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccc
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEa 437 (864)
++++..|+|+...|+.-++. | .....|||.||||..+..+...|+...|.++|+|||
T Consensus 690 glKILTYyGs~kErkeKRqg--------------W---------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQG--------------W---------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred cceEeeecCCHHHHHHHhhc--------------c---------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 99999999999998754331 1 123569999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc----------hHHHHHH
Q 002937 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISR 507 (864)
Q Consensus 438 H~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~----------~~~~~~~ 507 (864)
|++||..|+.++++..+++.+||||||||+||++.|||+|++||.|..|.+...|..+|.+.- ....+.+
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~R 826 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIR 826 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997532 2467889
Q ss_pred HHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
||++|+||+|||+|.||+++||.|.|++|+|.||..|+.+|+.++.+.-..-.-..|.-.+++|++|+||||||||-|++
T Consensus 827 LHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 827 LHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999999999999999999999999999999999999887665555667888899999999999999997752
Q ss_pred CCC-----------------------------C---------C------c------------------------------
Q 002937 588 GVE-----------------------------P---------D------I------------------------------ 593 (864)
Q Consensus 588 ~~~-----------------------------~---------~------~------------------------------ 593 (864)
.-- + . .
T Consensus 907 pRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~ 986 (1958)
T KOG0391|consen 907 PRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTF 986 (1958)
T ss_pred CCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccc
Confidence 100 0 0 0
Q ss_pred -----------------cC--------------------------------ch---------------------------
Q 002937 594 -----------------ED--------------------------------TN--------------------------- 597 (864)
Q Consensus 594 -----------------~~--------------------------------~~--------------------------- 597 (864)
.. .+
T Consensus 987 ~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~ 1066 (1958)
T KOG0391|consen 987 AGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVP 1066 (1958)
T ss_pred cccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccc
Confidence 00 00
Q ss_pred ----------------------------------------------------------------------HHH-------
Q 002937 598 ----------------------------------------------------------------------ESF------- 600 (864)
Q Consensus 598 ----------------------------------------------------------------------~~~------- 600 (864)
+.+
T Consensus 1067 t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1067 TQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred ccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc
Confidence 000
Q ss_pred -----------------------------------------HHhh-----------------------------------
Q 002937 601 -----------------------------------------KQLL----------------------------------- 604 (864)
Q Consensus 601 -----------------------------------------~~l~----------------------------------- 604 (864)
..++
T Consensus 1147 APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ 1226 (1958)
T KOG0391|consen 1147 APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQ 1226 (1958)
T ss_pred CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHH
Confidence 0000
Q ss_pred ------------------------------hcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEE
Q 002937 605 ------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (864)
Q Consensus 605 ------------------------------~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i 654 (864)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||+.+||-|.|+
T Consensus 1227 qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RL 1306 (1958)
T KOG0391|consen 1227 QLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL 1306 (1958)
T ss_pred HHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEe
Confidence 03899999999999999999999999999999999999999999999999
Q ss_pred eccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEe
Q 002937 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (864)
Q Consensus 655 ~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 734 (864)
||.++.++||.++++||+ +...||||+||++||.||||++||||||||+||||..+.||.+|||||||++.|+|||||+
T Consensus 1307 Dg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1307 DGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999998 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhHHHHHhhhhh--hcCCCHHHHHHHHhh
Q 002937 735 RGSIEERMMQMTKKKMVLEHLVVGRLK--AQNINQEELDDIIRY 776 (864)
Q Consensus 735 ~~TiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~l~~ll~~ 776 (864)
..||||.|+..+..|..|.+.++++.. ..-+.+..+.+||..
T Consensus 1386 e~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1386 ERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred cchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcC
Confidence 999999999999999999999986542 334556666666644
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-90 Score=744.97 Aligned_cols=457 Identities=44% Similarity=0.748 Sum_probs=410.5
Q ss_pred cccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEeccccHHHHHHH
Q 002937 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 274 ~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~sll~qW~~E 351 (864)
...||..+. .+|+.||+.|++||..++.+|-+||||||||||||+|+|+++++|.+. -+||||||+|.|++.||.+|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 446777766 789999999999999999999999999999999999999999999875 36899999999999999999
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeE
Q 002937 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (864)
Q Consensus 352 ~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~ 431 (864)
|.+|.|.++++.|.|+...|.+++.+- .+. +.......|||+||||+++..|...|++++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKfw--~rK---------------nmY~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKFW--NRK---------------NMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHhc--chh---------------hhhccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 999999999999999999999988741 000 012344689999999999999999999999999
Q ss_pred EEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhc----------cch
Q 002937 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD----------INQ 501 (864)
Q Consensus 432 vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~----------~~~ 501 (864)
+|+|||+.+|+..|.+++.|..++++.||||||||+||+..|||+||+|+.|..|.+..+|.++|.. .-+
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963 224
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhC
Q 002937 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (864)
Q Consensus 502 ~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~ 581 (864)
+.++.+||.+|+||||||.|++|..+|..+.+..|+|.||..|+.+|+.|..+... ..+.+++|+||++||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999998766432 233468999999999
Q ss_pred cccccCCCCCCcc-------------------------------------------------------------------
Q 002937 582 HPYMLEGVEPDIE------------------------------------------------------------------- 594 (864)
Q Consensus 582 hp~l~~~~~~~~~------------------------------------------------------------------- 594 (864)
||-|++..++...
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988754332100
Q ss_pred -----------CchH-----------------------------------------------------------------
Q 002937 595 -----------DTNE----------------------------------------------------------------- 598 (864)
Q Consensus 595 -----------~~~~----------------------------------------------------------------- 598 (864)
..++
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 0000
Q ss_pred ---------HHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 599 ---------SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 599 ---------~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
.....+..|||+..|+.+|.+++..|||||+|.|++.|+|+|++||..+||.|.|+||+.....|..++..
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 00111336999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K 749 (864)
|+. +..||||+||+|||.||||++||||||||+||||..+.||++|+||.||++.|+||||+++|||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 998 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhh
Q 002937 750 MVLEHLVVGR 759 (864)
Q Consensus 750 ~~l~~~v~~~ 759 (864)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999998854
No 9
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.6e-91 Score=786.85 Aligned_cols=624 Identities=50% Similarity=0.838 Sum_probs=538.2
Q ss_pred cccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC--cccccccccccccCccC-C--C-Cc
Q 002937 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL--NDIDKILDCEMRPTVAG-D--S-DV 120 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~--~~~~kil~~r~~p~~~~-~--~-~~ 120 (864)
++.+...|.+|+.+|.+++|++|+.+||.+|+.||+...|.+.|.|+.|..+. +.+.+++.|+|+|.... . . ..
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~ 122 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVI 122 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCcc
Confidence 45667899999999999999999999999999999999999889999996655 47899999999888643 1 1 12
Q ss_pred ccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhccCCC-------------Cc---h--
Q 002937 121 SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNN-------------AE---E-- 182 (864)
Q Consensus 121 ~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~-- 182 (864)
..........++|+|||+|.||+||.|+++..++......+ ..+..+......... .. +
T Consensus 123 ~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~ 199 (696)
T KOG0383|consen 123 SPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP---VELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERF 199 (696)
T ss_pred CCcccccchhhhcccccccCCccchhHHHHHHhhhhcccch---HhhhhhhhcccCccccccccccCccccccccchhhh
Confidence 22334445679999999999999999999988875432111 112222211111000 00 0
Q ss_pred hhhhcCCccchhhhHhhhh-cCCccceeeeeeccccccccccccCC-CCCccHHHHHHHHHHhhhccccccCccCCCCcc
Q 002937 183 DFVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQD 260 (864)
Q Consensus 183 ~~~~~~~~~~~verIi~~~-~~~~~~~ylVKW~~l~y~~~tWe~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 260 (864)
....+.|+|..+.||++++ ...+.+.|+|||+.|+|++++|+.+. ++..++..+++|....... ...+...
T Consensus 200 ~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~---~~~k~~~---- 272 (696)
T KOG0383|consen 200 LLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP---TVSKDLK---- 272 (696)
T ss_pred hheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc---ccccccc----
Confidence 1234788999999999999 55688999999999999999999887 7778888888876643331 0111000
Q ss_pred cccccCCCccccccccCCCCCC--CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCce
Q 002937 261 VTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPH 336 (864)
Q Consensus 261 ~~~~~~~~~~~~~~~~~p~~~~--~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--~~~~ 336 (864)
.........+..+|.++. ++.|.+||.+|++|++..|..+..+|||||||+|||++++.|+..+.... .+|+
T Consensus 273 ----~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~ 348 (696)
T KOG0383|consen 273 ----SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPP 348 (696)
T ss_pred ----ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCc
Confidence 002344567788999886 58999999999999999999999999999999999999999999998765 4599
Q ss_pred EEEeccccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHH
Q 002937 337 LVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEM 416 (864)
Q Consensus 337 LIV~P~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~ 416 (864)
|+++|.+++.+|.+|+..|.|.+.++.|.|+.+.|..++++++.+.+..-+.. ..+.........+|++.+++|++
T Consensus 349 Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~~ 424 (696)
T KOG0383|consen 349 LVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYET 424 (696)
T ss_pred eeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCCchhh
Confidence 99999999999999999999999999999999999999999998877653322 22223334556789999999999
Q ss_pred HHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHH
Q 002937 417 INLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 496 (864)
Q Consensus 417 ~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~ 496 (864)
+..+...+..+.|.++|+||+|+++|..++++..+......++++|||||+||++.||+++|+||.|+.|++...|.+.|
T Consensus 425 ~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~ 504 (696)
T KOG0383|consen 425 IEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEF 504 (696)
T ss_pred cccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 002937 497 KDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (864)
Q Consensus 497 ~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~l 576 (864)
.++...+++..||.++.|+|+||.+.|+++.+|+|.+.++++.|++.|+++|+.++++++..+.. ++...++.|++|+|
T Consensus 505 ~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel 583 (696)
T KOG0383|consen 505 HDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMEL 583 (696)
T ss_pred chhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 67788999999999
Q ss_pred HHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEec
Q 002937 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG 656 (864)
Q Consensus 577 rk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G 656 (864)
||+|+|||+++..++...........++++++|+.+|.+++++++..||||+||+||+.++|+|++++...| .|.|+||
T Consensus 584 ~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG 662 (696)
T KOG0383|consen 584 RKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDG 662 (696)
T ss_pred HHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccC
Confidence 999999999999776666677778899999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCHHHHHHHHHHhcCCCCCceEEEeeccccccC
Q 002937 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (864)
Q Consensus 657 ~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~G 690 (864)
..+..+||.+|++||++++..|+||+||+|||.|
T Consensus 663 ~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 663 PITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999999999988
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.7e-84 Score=736.71 Aligned_cols=465 Identities=38% Similarity=0.629 Sum_probs=405.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-C-------CCCceEEEeccccHHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-E-------RISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~-------~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
..||.||++|||||.+...-+-+|||||+||||||+|++.+++.=.. . ..-|.|||||.++..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999999998874322 1 233899999999999999999999
Q ss_pred cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEec
Q 002937 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (864)
Q Consensus 356 ~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvD 435 (864)
+|.++++.|.|.+..|..+|.. ..+.+|+||||+.+++|...+.++.|.++|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877653 23568999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc---------------
Q 002937 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------------- 500 (864)
Q Consensus 436 EaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~--------------- 500 (864)
|+|-+||..++++++++++.+.||++|||||+|||+.|||+|++||+|+.+++-+.|.+.|....
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996421
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-------cCC-CcchHHHH
Q 002937 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (864)
Q Consensus 501 ~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-------~~~-~~~~~~~~ 572 (864)
..-.++.||+.+-|||+||+|+||+++||||..+-.+|+|+|.|+++|+.+..+....... ..+ ...+.+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 1245788999999999999999999999999999999999999999999998873222111 112 24567889
Q ss_pred HHHHHHHhCcccccCCC-CCCccCchHH----HHHh--hhcccHHHHHHHHHHHHH--------------HcCceEEEEe
Q 002937 573 VMELRKLCCHPYMLEGV-EPDIEDTNES----FKQL--LESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (864)
Q Consensus 573 ~~~lrk~~~hp~l~~~~-~~~~~~~~~~----~~~l--~~~s~Kl~~l~~ll~~l~--------------~~g~kvlIFs 631 (864)
+..||+.|+||.|.-.. .++....... ...+ +..|+|+.+|.++|...- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999988553 2221111111 1122 578999999999998752 1479999999
Q ss_pred ccHHHHHHHHHHHhhC---CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCc
Q 002937 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (864)
Q Consensus 632 q~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp 708 (864)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||++++..+ +|++|.+||.|+||++||||||++.||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDv-LlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDV-LLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeE-EEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999888543 5678899999999999999999999877665 99999999999999999999999999999
Q ss_pred chhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhhh--cCCCHHHHHHHHh
Q 002937 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 775 (864)
Q Consensus 709 ~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~l~~ll~ 775 (864)
+++.||++|||||||++.|+||||||+||+||+|+..++-|+..++.|++..++ +.++.+++-++|.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976543 4567777777775
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=9.2e-73 Score=642.52 Aligned_cols=469 Identities=34% Similarity=0.541 Sum_probs=386.2
Q ss_pred CCCchHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCC------CceEEEeccccHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~------~~~~~ILade~GlGKTi~ai~~i~~l~~~~~------~~~LIV~P~sll~qW~~E 351 (864)
..|||||++|++||..+.. ..+|||+||+||+|||+|+|+|+..+++..+ .+.|||||.+++.+|++|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5899999999999976653 4568999999999999999999999987643 478999999999999999
Q ss_pred HHHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcce
Q 002937 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (864)
Q Consensus 352 ~~~~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w 429 (864)
|.+|.. .+....++|...+ .++....+..- ........|++.||+++......+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~------------------~~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFL------------------GYKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHh------------------hhhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777776665 11111111000 00123456999999999988888888999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc---------
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~--------- 500 (864)
+++|+||+|++||..+.++++|..+.+.+|++|||||+||++.|+|++++|.+|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885422
Q ss_pred -----hHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 002937 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (864)
Q Consensus 501 -----~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~ 575 (864)
.++.+.+|..+...|++||+.....+.||++.+++|.|.+++.|++.|+.++... .. ..-. ...+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-~~~~---~~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-RTLK---GYALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-hhhh---cchhhHHHH
Confidence 1345888999999999999999999999999999999999999999999998864 11 1111 115667788
Q ss_pred HHHHhCcccccCCCCCC-----ccCchHHH--------HHhhhcccHHHHHHHHHHHHHHc-CceEEEEeccHHHHHHHH
Q 002937 576 LRKLCCHPYMLEGVEPD-----IEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (864)
Q Consensus 576 lrk~~~hp~l~~~~~~~-----~~~~~~~~--------~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFsq~~~~ld~L~ 641 (864)
|+++|+||.|+...+.. ........ ..-...|+|+..|..++....+. ..++++.++++.++++++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 99999999998521111 10101000 00122488999999998665543 356677778899999999
Q ss_pred HHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 642 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
..++.+|+.+.++||+++..+|+.+|+.||++.+..+|||+|++|||+||||.+|++||+||++|||+++.||++||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhhh--cCCCHHHHHHHHhh
Q 002937 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIRY 776 (864)
Q Consensus 722 GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~l~~ll~~ 776 (864)
||+++|+||||++.||+||+||+++..|..|-..|++.... ..+..+++..++..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~ 749 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDL 749 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHhh
Confidence 99999999999999999999999999999999999865432 22333444444433
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.7e-69 Score=596.26 Aligned_cols=471 Identities=32% Similarity=0.510 Sum_probs=384.3
Q ss_pred CCCchHHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEeccccHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~---------~~~~~~ILade~GlGKTi~ai~~i~~l~~~---~~~~~LIV~P~sll~qW~~E 351 (864)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|+..++.. +...+|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 479999999999995433 468899999999999999999999987643 45699999999999999999
Q ss_pred HHHHcCCCe----EEEEe--cCh--HHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc---
Q 002937 352 FATWAPQMN----VVMYV--GTS--QARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--- 420 (864)
Q Consensus 352 ~~~~~p~~~----~~~~~--g~~--~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--- 420 (864)
|++|.+++. +-+|. ..+ ..|.. .+ +.| ...-.|+|+.|++++..
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~--~L------------~~W-----------~~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSY--ML------------QRW-----------QEDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHH--HH------------HHH-----------HhcCCEEEEehHHHHHHhcc
Confidence 999998532 12221 111 11111 10 111 11235999999998642
Q ss_pred ------------ccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCC
Q 002937 421 ------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (864)
Q Consensus 421 ------------~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~ 488 (864)
...|..-..|+||+||||.|||..+.+.+++..+.+++||+|||||+|||+.|+|.+++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 11233346799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccchH---------------HHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 002937 489 LEEFQEEFKDINQE---------------EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (864)
Q Consensus 489 ~~~f~~~~~~~~~~---------------~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~ 553 (864)
..+|.++|.+..+. ....-|+++|+.++-|+.-..+.+.|||+.+++|.|.||+.|..+|...++
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 99999999764321 234458999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHh---cCCCcchHHHHHHHHHHHhCcccccCC------------------CC---C------------------
Q 002937 554 RNYQILTR---RGGAQISLINVVMELRKLCCHPYMLEG------------------VE---P------------------ 591 (864)
Q Consensus 554 ~~~~~l~~---~~~~~~~~~~~~~~lrk~~~hp~l~~~------------------~~---~------------------ 591 (864)
.....-+. +.+....++..+..|+++.+||+.+.- +. .
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 32222111 223455688889999999999986410 00 0
Q ss_pred ------Cc------------------------------------------------------cCchHHHHH--------h
Q 002937 592 ------DI------------------------------------------------------EDTNESFKQ--------L 603 (864)
Q Consensus 592 ------~~------------------------------------------------------~~~~~~~~~--------l 603 (864)
+. ..+.+.+.. .
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 00 000011111 2
Q ss_pred hhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh----------------------CCCcEEEEeccCCHH
Q 002937 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 661 (864)
Q Consensus 604 ~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~----------------------~g~~~~~i~G~~~~~ 661 (864)
+..||||.+|.+||....+-|.|+|||||+...||+|+.||.. .|..|.||||+++..
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3469999999999999999999999999999999999999952 366899999999999
Q ss_pred HHHHHHHHhcCCCCCc-eEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHH
Q 002937 662 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 662 ~R~~~i~~Fn~~~~~~-~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
+|++..++||++.+-+ .+|||||+||+.||||-+||+|||||..|||..+.|+|-|++|+||+|+|+||||++.||+|+
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999976533 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHhhhhh-hcCCCHHHHHHHHhhchh
Q 002937 741 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (864)
Q Consensus 741 ~i~~~~~~K~~l~~~v~~~~~-~~~~~~~~l~~ll~~g~~ 779 (864)
+||.++-.|..+...|++... ....+.++|..|+.|...
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 999999999999999998764 346788999999888754
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=8.8e-67 Score=545.08 Aligned_cols=469 Identities=30% Similarity=0.501 Sum_probs=379.1
Q ss_pred cccCCCCCCCCCCchHHHHHHHHHHHhhc-CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 274 ~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~-~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
-.+||..+. ..|-|||++|+.|+..... .-.|||||||||.|||+|+|+++.. .-...|+|||||.-.+.||.+|+
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 345666555 6799999999999965544 6789999999999999999999876 33445999999999999999999
Q ss_pred HHHcC-CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc-----------
Q 002937 353 ATWAP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 420 (864)
Q Consensus 353 ~~~~p-~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----------- 420 (864)
.+++. .+++.+|+|.+...+. .....||+++|||..+.+.
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni----------------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI----------------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH----------------------------HHhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 99984 5889999998765432 1235799999999988432
Q ss_pred ------ccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChH----
Q 002937 421 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE---- 490 (864)
Q Consensus 421 ------~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~---- 490 (864)
...|.+++|..||+||||.+|+..|...+++..+.+.+||+|||||+||.+.|||+|++||+..+|..+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 2346778999999999999999999999999999999999999999999999999999999988864320
Q ss_pred -----H--H-------------------HHHH--------h-ccchHHHHHHHHHHHhHHHHHHHHhhHhh--cCCCcEE
Q 002937 491 -----E--F-------------------QEEF--------K-DINQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKE 533 (864)
Q Consensus 491 -----~--f-------------------~~~~--------~-~~~~~~~~~~L~~~l~~~~lrr~k~dv~~--~lp~~~~ 533 (864)
+ | ...| + ...........|.+++.+|+||+|-.-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 0 1 0000 0 00123455678999999999999854333 5899988
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhCcccccCCCCC----------------
Q 002937 534 LILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVEP---------------- 591 (864)
Q Consensus 534 ~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~------~~~~~~~~~~~~~lrk~~~hp~l~~~~~~---------------- 591 (864)
.+-.--++..++.+|+.+........+.- -.+..+++.++.+|||+..||+|.-....
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 87778899999999999987655443321 12345678889999999999998632100
Q ss_pred -Cc-----cCc-------------------------------------h--------HHH----------HHhhhcccHH
Q 002937 592 -DI-----EDT-------------------------------------N--------ESF----------KQLLESSGKL 610 (864)
Q Consensus 592 -~~-----~~~-------------------------------------~--------~~~----------~~l~~~s~Kl 610 (864)
++ ... . ..+ ..-++.|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 00 000 0 000 0114468999
Q ss_pred HHHHHHHHHHHHcC--ceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q 002937 611 QLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (864)
Q Consensus 611 ~~l~~ll~~l~~~g--~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~ 688 (864)
++|.+-|..+.+++ -|.||||||+.|||+|.-.|...|++.+.+.|+|++..|..+|+.|.++...+ |||+|.+|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~-vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCR-VFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeE-EEEEEeccCc
Confidence 99999998888765 48899999999999999999999999999999999999999999998866554 5999999999
Q ss_pred cCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhh--hcCCC
Q 002937 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNIN 766 (864)
Q Consensus 689 ~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~ 766 (864)
..+||+.|++|+++||+|||+...||.+|+|||||.++|.|.||+.++|||++|++++++|..++++.+|... -..++
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt 781 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLT 781 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653 23566
Q ss_pred HHHHHHHH
Q 002937 767 QEELDDII 774 (864)
Q Consensus 767 ~~~l~~ll 774 (864)
.++|..|+
T Consensus 782 ~eDmqfLF 789 (791)
T KOG1002|consen 782 EEDMQFLF 789 (791)
T ss_pred HHHHHHHh
Confidence 77776554
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.2e-66 Score=563.48 Aligned_cols=472 Identities=29% Similarity=0.512 Sum_probs=388.0
Q ss_pred cccCCCCCCCCCCchHHHHHHHHHHHhhc-CCCceEEEcCCCCcHHHHHHHHHHHHhcC-----C----CCceEEEeccc
Q 002937 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAPLS 343 (864)
Q Consensus 274 ~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~-~~~~~ILade~GlGKTi~ai~~i~~l~~~-----~----~~~~LIV~P~s 343 (864)
+...|..+. ..|.|||..|+.||..... .+.||||||+||+|||+++|+++.+-... + ..++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 334454443 6899999999999965544 46799999999999999999999865421 1 12799999999
Q ss_pred cHHHHHHHHHHHc--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh--
Q 002937 344 TLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-- 419 (864)
Q Consensus 344 ll~qW~~E~~~~~--p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~-- 419 (864)
++.||..|+++-. ..+.|.+|||... |++ . .....+||||||||..+..
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~-------------------------~~~L~~YDvViTTY~lva~~~ 446 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-REI-S-------------------------AKELRKYDVVITTYNLVANKP 446 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-C-------------------------HHHHhhcceEEEeeeccccCC
Confidence 9999999998765 3478999999875 211 1 1123579999999999865
Q ss_pred --------cccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHH
Q 002937 420 --------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (864)
Q Consensus 420 --------~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 491 (864)
....|..+.|.+||+||||.+||.+++...++..+++..||+|||||+||+..|+|+|+.||+...|++...
T Consensus 447 ~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~ 526 (901)
T KOG4439|consen 447 DDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQ 526 (901)
T ss_pred chhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHH
Confidence 245577889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhh-----cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-----
Q 002937 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR----- 561 (864)
Q Consensus 492 f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~-----~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~----- 561 (864)
|.+...... .....++.-+.+++|+||+|...-. .||++...++.++|+..++..|.-+.+........
T Consensus 527 Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~ 605 (901)
T KOG4439|consen 527 WKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQR 605 (901)
T ss_pred HHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888765332 2345567777889999999987665 79999999999999999999999887765444321
Q ss_pred -----cCC----------------------------C----cchHHHHHHHHHHHhCcccccCCCCCCcc----------
Q 002937 562 -----RGG----------------------------A----QISLINVVMELRKLCCHPYMLEGVEPDIE---------- 594 (864)
Q Consensus 562 -----~~~----------------------------~----~~~~~~~~~~lrk~~~hp~l~~~~~~~~~---------- 594 (864)
.++ . ...++..+++|||+|+||.+.....+...
T Consensus 606 e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sd 685 (901)
T KOG4439|consen 606 EDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSD 685 (901)
T ss_pred hhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhh
Confidence 000 0 01246788999999999976543321100
Q ss_pred -C-----------------------------chHHHHHhhhcccHHHHHHHHHHHH-HHcCceEEEEeccHHHHHHHHHH
Q 002937 595 -D-----------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDY 643 (864)
Q Consensus 595 -~-----------------------------~~~~~~~l~~~s~Kl~~l~~ll~~l-~~~g~kvlIFsq~~~~ld~L~~~ 643 (864)
. ....+-+....|.|+..+...++.+ .....|++|.|||+.+|+++...
T Consensus 686 e~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~h 765 (901)
T KOG4439|consen 686 EEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKH 765 (901)
T ss_pred hhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHH
Confidence 0 0011122234688999999998887 55678999999999999999999
Q ss_pred HhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCC
Q 002937 644 LTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 644 L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
|...|+.|..++|.+...+|+.+++.||....+..|+|+|..|||.||||.+|+++|++|..|||+...||.+|++|+||
T Consensus 766 i~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQ 845 (901)
T KOG4439|consen 766 IQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQ 845 (901)
T ss_pred HhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhh---hcCCCHHHHHHHH
Q 002937 724 TNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDII 774 (864)
Q Consensus 724 ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~---~~~~~~~~l~~ll 774 (864)
+|+|.||||+++||+|++|...+.+|..++..|+.+.. ...++..++..||
T Consensus 846 kK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 846 KKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred cCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 99999999999999999999999999999999986433 3456667776664
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-62 Score=613.14 Aligned_cols=473 Identities=43% Similarity=0.722 Sum_probs=407.5
Q ss_pred CCCCCCchHHHHHHHHHH-HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccccHHHHHHHHHHHc
Q 002937 281 LSGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 281 ~~~~~L~~yQ~~~v~~l~-~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
....+|+|||.+|++|+. .....+.+|||||+||+|||+|+++++.++.... .+|+|||||.+++.+|.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334789999999999999 7888999999999999999999999998855432 369999999999999999999999
Q ss_pred CCCe-EEEEecChHH----HHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh---cccccCCcc
Q 002937 357 PQMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (864)
Q Consensus 357 p~~~-~~~~~g~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~---~~~~l~~~~ 428 (864)
|.++ +..++|.... +..+...... . . ...+++++|||+.+.. +...+..+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------------~-~-~~~~~v~itty~~l~~~~~~~~~l~~~~ 472 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKL-------------------H-L-VIIFDVVITTYELLRRFLVDHGGLKKIE 472 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhh-------------------c-c-cceeeEEechHHHHHHhhhhHHHHhhce
Confidence 9999 9999998863 4333332100 0 0 2348999999999999 999999999
Q ss_pred eeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhh-hcCCCCCC-ChHHHHHHHhccc------
Q 002937 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------ 500 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~-~l~p~~~~-~~~~f~~~~~~~~------ 500 (864)
|+.+|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|+.++ +...|...|....
T Consensus 473 ~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 473 WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred eeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999 99999999 5588888886432
Q ss_pred -----hHHHHHHHHHHHhHHHHHHHHhh--HhhcCCCcEEEEEEecCCHHHHHHHHHHHH---HHHHHHHhc--CC----
Q 002937 501 -----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG---- 564 (864)
Q Consensus 501 -----~~~~~~~L~~~l~~~~lrr~k~d--v~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~---~~~~~l~~~--~~---- 564 (864)
....+..|+.+++|+++||.+.+ +...||++.+.++.|+|++.|+.+|..... ++...+... ..
T Consensus 553 ~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (866)
T COG0553 553 GPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDEN 632 (866)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12344558899999999999999 899999999999999999999999999999 655555432 11
Q ss_pred ----CcchHHHHHHHHHHHhCcccccCCC-CCCcc----------CchHHHHHhhhcc-cHHHHHHHHH-HHHHHcCc--
Q 002937 565 ----AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH-- 625 (864)
Q Consensus 565 ----~~~~~~~~~~~lrk~~~hp~l~~~~-~~~~~----------~~~~~~~~l~~~s-~Kl~~l~~ll-~~l~~~g~-- 625 (864)
....+++.++.+|++|+||.++... ..... ........++..+ +|+..+.+++ ..+..+|+
T Consensus 633 ~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~ 712 (866)
T COG0553 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYH 712 (866)
T ss_pred cccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccc
Confidence 1567889999999999999998775 22111 1111123456678 9999999999 89999999
Q ss_pred eEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCC
Q 002937 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (864)
Q Consensus 626 kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~ 705 (864)
|+|||+||+.++++|+.+|...++.+.+++|+++...|+..+++|+++ ....+|++|++|||.||||+.|++||+||++
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~ 791 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccc
Confidence 999999999999999999999999999999999999999999999997 4556799999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhh-h--hhcCCCHHHHHHHHh
Q 002937 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 775 (864)
Q Consensus 706 wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~-~--~~~~~~~~~l~~ll~ 775 (864)
|||+.+.||++|+||+||+++|.||++++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999875 2 223455666666654
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-58 Score=481.65 Aligned_cols=409 Identities=27% Similarity=0.425 Sum_probs=328.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEE-E
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV-M 363 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~-~ 363 (864)
.|.|||++||++. +..|++++||||||||||+|||+++.+.+.++ |.|||||.++...|.+++.+|+|....+ +
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 6999999999875 37899999999999999999999999887764 9999999999999999999999876552 2
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCc
Q 002937 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (864)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~ 443 (864)
..+..+.- ..-.....|.|+||+.+......+..-+|.+||+||+|.+|+.
T Consensus 273 v~~~~D~~-----------------------------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDPL-----------------------------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCCc-----------------------------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 22221100 0011234699999999999999999989999999999999999
Q ss_pred ccHHHHHHHhc--ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc---------hHHHHHHHHHHH
Q 002937 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (864)
Q Consensus 444 ~s~~~~~l~~l--~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~---------~~~~~~~L~~~l 512 (864)
.++..++...+ ...|.|||||||--..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99999998887 4789999999999999999999999999999999999999997643 335677788776
Q ss_pred -hHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCC
Q 002937 513 -APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (864)
Q Consensus 513 -~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~ 591 (864)
+..|+||+|.+++.+||||...++. ...+.+-...+++...... ..........-...++..+
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~-~t~~~~~e~~~~~l~l~y~-------------- 467 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAAD-YTKVNSMERKHESLLLFYS-------------- 467 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhh-cchhhhhhhhhHHHHHHHH--------------
Confidence 4579999999999999999555554 4444444444444333221 0000000000000011111
Q ss_pred CccCchHHHHHhhhcccHHHHHHHHHHH----HHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHH
Q 002937 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (864)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~----l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i 667 (864)
...-.|+..+.+.|.. ..+.+.|++||+++..++|-|+.++..+++...||||++++..|+.++
T Consensus 468 ------------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 468 ------------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred ------------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 1134566666666655 445688999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 002937 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (864)
Q Consensus 668 ~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~ 747 (864)
+.|+..+.- .|-++|..|+|.||+|++|+.|+|.+.+|||...+||.+|+||+||+..|.||+|++++|+|+.+|....
T Consensus 536 qsFQ~seev-~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSEEV-RVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhccccce-EEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 999986544 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHH
Q 002937 748 KKMVLEHLV 756 (864)
Q Consensus 748 ~K~~l~~~v 756 (864)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998765554
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-58 Score=503.09 Aligned_cols=484 Identities=32% Similarity=0.511 Sum_probs=381.7
Q ss_pred CCCchHHHHHHHHHH---------HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~---------~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~~ 353 (864)
..|+|||+-||+||+ +.-+.|.|||||+.||||||+|+|+|+..++++. .+.+|+|+|-.++.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 369999999999984 2335688999999999999999999999988765 458999999999999999999
Q ss_pred HHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc-------------
Q 002937 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------------- 420 (864)
Q Consensus 354 ~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~------------- 420 (864)
+|.|... .+.. ...+.++.|.-.+..+....+ ..++. +....--|+++.|++++-.
T Consensus 333 mWiP~y~-----sD~~--vrpR~F~vf~LnD~~KT~~~R-akvi~---~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 333 MWIPKYF-----SDTG--VRPRSFEVFLLNDGVKTFDQR-AKVIE---QWVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhcCCCc-----ccCC--CccceeEEEEecCchhhHHHH-HHHHH---HHhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 9998621 0000 011122222111111100000 00000 0111234667777666321
Q ss_pred -------------------------ccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHH
Q 002937 421 -------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (864)
Q Consensus 421 -------------------------~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~ 475 (864)
...|-.-..|+||+||+||+||..+.+..+|+.+++++|+.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 1122233478999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHhccch--------H-------HHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecC
Q 002937 476 MLMHFLDAGKFGSLEEFQEEFKDINQ--------E-------EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540 (864)
Q Consensus 476 ~ll~~l~p~~~~~~~~f~~~~~~~~~--------~-------~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~l 540 (864)
.++.|++|..+++..+|...|..... . .....||.+|..|+-||+...+...||.+.++++.|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 99999999999999999999965321 1 23456899999999999999998999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC--------C----------------------
Q 002937 541 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV--------E---------------------- 590 (864)
Q Consensus 541 s~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~--------~---------------------- 590 (864)
|..|+++|+.++..........+....+.+....-..|+.|||-.+... +
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~ 641 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNS 641 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCC
Confidence 9999999999987666655544444455666677778888999643100 0
Q ss_pred ----CC--------------------------------ccCchH--------HHHHhhhcccHHHHHHHHHHHHHHcCce
Q 002937 591 ----PD--------------------------------IEDTNE--------SFKQLLESSGKLQLLDKMMVKLKEQGHR 626 (864)
Q Consensus 591 ----~~--------------------------------~~~~~~--------~~~~l~~~s~Kl~~l~~ll~~l~~~g~k 626 (864)
++ +....+ ....++..++|+..+.+++..-..-|.|
T Consensus 642 ~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 642 IPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred CCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCce
Confidence 00 000000 0122455678888888888888888999
Q ss_pred EEEEeccHHHHHHHHHHHhhC------------------CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q 002937 627 VLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (864)
Q Consensus 627 vlIFsq~~~~ld~L~~~L~~~------------------g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~ 688 (864)
+|||||....||.|+++|..+ ..+|.+++|.++..+|+++|++||.+.+-...||+||++|.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 999999999999999999653 24689999999999999999999998887778999999999
Q ss_pred cCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhhh-cCCCH
Q 002937 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA-QNINQ 767 (864)
Q Consensus 689 ~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~~-~~~~~ 767 (864)
.||||-+|+.+|+||..|||..+.||..|++|+||+|++.|||||+.+|+|.+||.++-.|.++.+.|++..+. .+++.
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~ 881 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQ 881 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988763 57899
Q ss_pred HHHHHHHhhch
Q 002937 768 EELDDIIRYGS 778 (864)
Q Consensus 768 ~~l~~ll~~g~ 778 (864)
.|++.|+.+..
T Consensus 882 Ke~enLl~~~e 892 (1387)
T KOG1016|consen 882 KELENLLMYDE 892 (1387)
T ss_pred HHHHHHhhhhh
Confidence 99999998865
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.2e-54 Score=517.18 Aligned_cols=416 Identities=19% Similarity=0.288 Sum_probs=318.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~~~~~p~~~~~ 362 (864)
..|.|||+..+..+.. ....++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+++ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~--~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGR--RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhh--ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 5699999999876543 3467899999999999999999998876654 469999999999999999998887 56666
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc---cccCCcceeEEEeccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~---~~l~~~~w~~vIvDEaH~ 439 (864)
++.+....... . ........++++|+||+.+.++. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~~--------~----------------~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEAQ--------H----------------DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhhc--------c----------------cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 66654322100 0 00012235789999999998754 345667999999999999
Q ss_pred ccC---cccHHHHHHHhc--ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc--------------
Q 002937 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------------- 500 (864)
Q Consensus 440 lkn---~~s~~~~~l~~l--~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~-------------- 500 (864)
+++ ..|+.++.+..+ ++.++|+|||||++|+..|+|++|++|+|+.|+++..|.+......
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 4679999999999999999999999999999999999976442100
Q ss_pred -hHHHHHHHHHH---------------------------Hh---------HHHHHHHHhhHhhcCCCcEEEEEEecCCHH
Q 002937 501 -QEEQISRLHRM---------------------------LA---------PHLLRRVKKDVMKELPPKKELILRVELSSK 543 (864)
Q Consensus 501 -~~~~~~~L~~~---------------------------l~---------~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~ 543 (864)
.......|..+ ++ +.|+|++++++. .+|++....+.+++++.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 11111122111 11 456788888876 68999999999999764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccc-ccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHH
Q 002937 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (864)
Q Consensus 544 q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~-l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~ 622 (864)
|......... ..++++ .+|. ++.... ........++|+..|.++|+...
T Consensus 443 ----y~~~~~~~~~----------------~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 443 ----YQTAIKVSLE----------------ARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred ----HHHHHHHhHH----------------HHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhcC-
Confidence 3322211000 011111 1110 000000 00112345789999999998753
Q ss_pred cCceEEEEeccHHHHHHHHHHH-hhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
+.|+||||++..+++.|.+.| ...|+++..++|+++..+|+++++.|++++++. .+|++|.+||+|+|++.|++||+
T Consensus 493 -~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 -SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred -CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEechhhccCCCcccccEEEE
Confidence 789999999999999999999 567999999999999999999999998754333 36899999999999999999999
Q ss_pred eCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhh
Q 002937 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (864)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~ 759 (864)
||+||||..++||+||+||+||++.|.||.++.++|+++.|++...+|+++...+++.
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999999999999887766644
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-48 Score=450.05 Aligned_cols=437 Identities=30% Similarity=0.493 Sum_probs=354.8
Q ss_pred hHHHHHHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--------CCceEEEeccccHHHHHHHHHHHcC-
Q 002937 288 PYQLEGLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAPLSTLRNWEREFATWAP- 357 (864)
Q Consensus 288 ~yQ~~~v~~l~~~-~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--------~~~~LIV~P~sll~qW~~E~~~~~p- 357 (864)
.+|..+-.|+... +..-.|||+||+||+|||+++++++....... .+..|||||.+++.||..|+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5666665555333 34467999999999999999999887654332 2478999999999999999966663
Q ss_pred -CCeEEEEec-ChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEec
Q 002937 358 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (864)
Q Consensus 358 -~~~~~~~~g-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvD 435 (864)
.+.+.+|+| .... ....+++||+|||.++.. ..+..+.|-++|+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 477788888 2111 123578899999999975 56667899999999
Q ss_pred ccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccch----HHHHHHHHHH
Q 002937 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ----EEQISRLHRM 511 (864)
Q Consensus 436 EaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~----~~~~~~L~~~ 511 (864)
|||.++|.+++.++++..+.+.+||.|||||+||++.|+|+++.|+.-+.+.....|...+..... ......++..
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888877754322 3567788999
Q ss_pred HhHHHHHHHHhhH-----hhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHh
Q 002937 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (864)
Q Consensus 512 l~~~~lrr~k~dv-----~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~------~~~~~~~~~~~~~lrk~~ 580 (864)
|..+++||+|..- ...+||+...++.+.++..++.+|..+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 23689999999999999999999999887765544321 123445667778999999
Q ss_pred CcccccCCCCCCcc----Cch--------------------------------------------------------HHH
Q 002937 581 CHPYMLEGVEPDIE----DTN--------------------------------------------------------ESF 600 (864)
Q Consensus 581 ~hp~l~~~~~~~~~----~~~--------------------------------------------------------~~~ 600 (864)
+||.+.-....... ... -..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987531110000 000 000
Q ss_pred HHhhh-------------cccHHHHHHHHHHHHHHcCc-eEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 601 ~~l~~-------------~s~Kl~~l~~ll~~l~~~g~-kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
..++. .|.|+..+.++|........ +++||||++.++++++..|...|+.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11111 26778888888875444444 99999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHH
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~ 746 (864)
+..|+.+.. ..+.++|.+|||.|+||+.|++|+++||+|||....||+.|+||+||+++|.|+||+.++|+||+|+..+
T Consensus 582 ~~~~~~~~~-~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPCDPL-VTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hcccccCcc-HHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999995444 4458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhh
Q 002937 747 KKKMVLEHLVVG 758 (864)
Q Consensus 747 ~~K~~l~~~v~~ 758 (864)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999988776654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.8e-41 Score=367.22 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC----CceEEEeccccHHHHHHHHHHH
Q 002937 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 289 yQ~~~v~~l~~~~---------~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~----~~~LIV~P~sll~qW~~E~~~~ 355 (864)
||++||+||...+ ...+||||||+||+|||+++++++..+..... +++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78889999999999999999999998876543 2699999999999999999999
Q ss_pred c-C-CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHH-----hcccccCCcc
Q 002937 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (864)
Q Consensus 356 ~-p-~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~-----~~~~~l~~~~ 428 (864)
+ | .++++++.|....+.. .......++++|+||+.+. .....+...+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6888888887722211 1122357899999999999 6677788889
Q ss_pred eeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhc---cchHHHH
Q 002937 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~---~~~~~~~ 505 (864)
|++||+||+|++||..+..++++..+.+.++|+|||||++|++.|+|++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988743 4456778
Q ss_pred HHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhC
Q 002937 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (864)
Q Consensus 506 ~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~----~~~~~~~~~~~~lrk~~~ 581 (864)
..|...++++++||++.++...+|+..+.++.++|++.|++.|+.+.......+.... .....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999889999999999999999999999998887665544333 334568889999999999
Q ss_pred ccccc
Q 002937 582 HPYML 586 (864)
Q Consensus 582 hp~l~ 586 (864)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-39 Score=372.27 Aligned_cols=342 Identities=15% Similarity=0.255 Sum_probs=253.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHHc--CCC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--PQM 359 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~~--p~~ 359 (864)
..+|||||.++++++... ...++|||.++||+|||+++++++..+ .+++|||||... +.||.++|.+|+ +..
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 468999999999877321 123589999999999999999988776 258999999765 789999999997 345
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc----------ccccCCcce
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPIKW 429 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----------~~~l~~~~w 429 (864)
.+..|.|....+ .....+|+|+||+++... ...+....|
T Consensus 328 ~I~~~tg~~k~~-------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~ 376 (732)
T TIGR00603 328 QICRFTSDAKER-------------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREW 376 (732)
T ss_pred eEEEEecCcccc-------------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccC
Confidence 666676653221 012357999999998643 133555689
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhh-cCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~-l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
++||+||||++.+ ....+.+..+.+.+||+|||||.+++-. +..+.+ +.|..+..
T Consensus 377 gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~~--~~~L~~LiGP~vye~-------------------- 432 (732)
T TIGR00603 377 GLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDDK--ITDLNFLIGPKLYEA-------------------- 432 (732)
T ss_pred CEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCCc--hhhhhhhcCCeeeec--------------------
Confidence 9999999999964 3444567778899999999999987632 222333 33433320
Q ss_pred HHHHhHHHHHHHHhhHh--hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 509 HRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~--~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
...+.. ..|.+.....|+|+|++.....|.. ... . .+..
T Consensus 433 -----------~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~~-------~-----------~k~~------- 473 (732)
T TIGR00603 433 -----------NWMELQKKGFIANVQCAEVWCPMTPEFYREYLR---ENS-------R-----------KRML------- 473 (732)
T ss_pred -----------CHHHHHhCCccccceEEEEEecCCHHHHHHHHH---hcc-------h-----------hhhH-------
Confidence 111111 2567778889999999865444421 100 0 0000
Q ss_pred CCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
....+..|+..+..++......|+|+||||+++..++.+...|. . ..|+|.++..+|+++
T Consensus 474 ---------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~~i 533 (732)
T TIGR00603 474 ---------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERMQI 533 (732)
T ss_pred ---------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHHHH
Confidence 00124578899989988776789999999999999888888773 3 458999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC-CcchhhHHHHHHHHhCCCC-----cEEEEEEEeCCCHHH
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTN-----KVMIFRLITRGSIEE 740 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~RiGQ~~-----~V~Vy~lv~~~TiEe 740 (864)
+++|+.++. +.+|++|++|++|||++.|++||++++++ |+..++||+||+.|.+..+ ...+|.|++++|.|+
T Consensus 534 l~~Fr~~~~--i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 534 LQNFQHNPK--VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred HHHHHhCCC--ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 999985432 23688889999999999999999999986 9999999999999998764 378999999999998
Q ss_pred HHHHH
Q 002937 741 RMMQM 745 (864)
Q Consensus 741 ~i~~~ 745 (864)
....+
T Consensus 612 ~~s~~ 616 (732)
T TIGR00603 612 YYSTK 616 (732)
T ss_pred HHHHH
Confidence 87543
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.8e-34 Score=352.38 Aligned_cols=431 Identities=17% Similarity=0.199 Sum_probs=281.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC--CCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (864)
.++|+||.+.+..+. . +++|++++||+|||++++.++..++....+++|||||. .+..||..++.+++. ..+
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999888887765555799999997 677899999998863 347
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEaH 438 (864)
++.++|.......... ....+|+++|++.+..+. ..+....|++||+||||
T Consensus 89 v~~~~g~~~~~~r~~~---------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAEL---------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHHH---------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 8888886544321111 124679999999987653 33444578999999999
Q ss_pred cccCcccHHHHHHHhc---ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCCh----HHHHHHH-------hccchHHH
Q 002937 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL----EEFQEEF-------KDINQEEQ 504 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l---~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~----~~f~~~~-------~~~~~~~~ 504 (864)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|........ ......+ ....-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987665544332222 234589999999765 5566666665543322111 1111111 11223455
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhc-CCCcEEEEEEecCCHHHHHHHHHHHHHHH---HHH---------Hh-----cCCCc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNY---QIL---------TR-----RGGAQ 566 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~-lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~---~~l---------~~-----~~~~~ 566 (864)
...++..|..++.++.+...... .++.........+...++.++..+..... ..+ .. .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888887776643222 22221111112222223222222111000 000 00 00001
Q ss_pred chHHHHHHHHHHHhCcccccCCCCCCccC-----chHHHHHhhhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHH
Q 002937 567 ISLINVVMELRKLCCHPYMLEGVEPDIED-----TNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDL 639 (864)
Q Consensus 567 ~~~~~~~~~lrk~~~hp~l~~~~~~~~~~-----~~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~ 639 (864)
..+...+..++....++........-..+ ...........++|+..|.++|.... ..+.|+||||++..+++.
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~ 380 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEK 380 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 11222222222211111000000000000 00011223345799999999998876 468899999999999999
Q ss_pred HHHHHhhCCCcEEEEecc--------CCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchh
Q 002937 640 LEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHAD 711 (864)
Q Consensus 640 L~~~L~~~g~~~~~i~G~--------~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~ 711 (864)
|.++|...|+++.+++|. ++..+|++++++|+++.. .+|++|.++++|+|++.+++||+||++|||..+
T Consensus 381 L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~---~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 381 IVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF---NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC---CEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999999999999997 788899999999987643 379999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHH
Q 002937 712 LQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (864)
Q Consensus 712 ~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~ 753 (864)
+|+.||++|.|+ +.||.|++++|.||.++....+|...+
T Consensus 458 iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 458 IQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 998888888765 678999999999999987776655544
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.2e-32 Score=287.40 Aligned_cols=422 Identities=18% Similarity=0.228 Sum_probs=272.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHc--CCCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA--PQMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~--p~~~ 360 (864)
.+.|.||..-+.-.. .+|++++.+||||||++|+.++...+....+.+|+++| ..++.|-...+.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 468899998775432 34999999999999999999988776666669999999 567788888888887 6678
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEaH 438 (864)
++.++|.......... +.+..|+++|++++.+|. ..+..-.+.++|+||||
T Consensus 89 i~~ltGev~p~~R~~~---------------------------w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREEL---------------------------WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHHH---------------------------HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 8889986654432111 245679999999998874 34555678999999999
Q ss_pred cccCcccHHHHHHHhc--cc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCC-------ChHHHHH----HHhccchHHH
Q 002937 439 RLKNKDSKLFSSLKQY--ST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFG-------SLEEFQE----EFKDINQEEQ 504 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l--~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~-------~~~~f~~----~~~~~~~~~~ 504 (864)
|.-++.+-.+-+-..+ .. .+.++||||| -++.+.+...++-|..+... +...+.. .+-.+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 9988776555443333 33 3579999999 34555555555555433321 1111100 0111223344
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhCc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS-KQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCH 582 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~-~q~~~Y~~i~~~~~~~l~~~~-~~~~~~~~~~~~lrk~~~h 582 (864)
+..+++.|+..+-.|++.--... +...-++ .++++.... .......... .....++..+..+-++ .|
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g--------~~~~~~~~~~kdl~~~~--~~~~~~a~~~~~~~~~~l~~~a~~~kl-~~ 289 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG--------VIESSSPVSKKDLLELR--QIRLIMAKNEDSDKFRLLSVLAEAIKL-AH 289 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------ceeccCcccHhHHHHHH--HHHHHhccCccHHHHHHHHHHHHHHHH-HH
Confidence 55555555444433333211111 1111111 122222222 0111111110 0001111111111111 11
Q ss_pred c--------------cccC---CCCC-Cc---------cCchHHHHHh------hhcccHHHHHHHHHHHHH--HcCceE
Q 002937 583 P--------------YMLE---GVEP-DI---------EDTNESFKQL------LESSGKLQLLDKMMVKLK--EQGHRV 627 (864)
Q Consensus 583 p--------------~l~~---~~~~-~~---------~~~~~~~~~l------~~~s~Kl~~l~~ll~~l~--~~g~kv 627 (864)
+ |+.. .... .. ......+..+ --..+||..+.+++.+.. ..+.|+
T Consensus 290 a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 290 ALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 1 1100 0000 00 0000010111 114689999999999877 557899
Q ss_pred EEEeccHHHHHHHHHHHhhCCCcEE-EEec--------cCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCE
Q 002937 628 LIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698 (864)
Q Consensus 628 lIFsq~~~~ld~L~~~L~~~g~~~~-~i~G--------~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~ 698 (864)
|||++|.++++.|.++|...|.... ++-| ++++.+..++|+.|+++.-+ +|++|..|.+|||++++|.
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccE
Confidence 9999999999999999999988875 6655 48899999999999886554 8999999999999999999
Q ss_pred EEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHH
Q 002937 699 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHL 755 (864)
Q Consensus 699 VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~ 755 (864)
||+|||.=+|...+||.||.+| ++.-.||-|+++||-|+.-|..+.+|..-...
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e 500 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIE 500 (542)
T ss_pred EEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 47778899999999999999999888654443
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-32 Score=313.32 Aligned_cols=256 Identities=25% Similarity=0.457 Sum_probs=196.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc------------C-----CCCceEEEeccccHHHHHHHHHHHcCCC-eEEE
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFG------------E-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~------------~-----~~~~~LIV~P~sll~qW~~E~~~~~p~~-~~~~ 363 (864)
..|..+++||+||+|||...++....-.. . ..|.+|||||++++.||-.||.++++.. .+..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34567899999999999987776543221 1 1357999999999999999999999776 9999
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc----------------------
Q 002937 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---------------------- 421 (864)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~---------------------- 421 (864)
|.|....--. .......+|||+|||+.++.+.
T Consensus 452 Y~Girk~~~~--------------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFWL--------------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhccc--------------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 9987654210 1123468999999999997642
Q ss_pred cccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccch
Q 002937 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (864)
Q Consensus 422 ~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~ 501 (864)
..|-.+.|-.|++|||+-+....|...+.+..+.+.++|++||||+|+ +.+|+.||.||...+|.....|.+.......
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 223345688999999999999999999999999999999999999999 9999999999999999999988776543211
Q ss_pred -HHHHHHHHHHHhHHHHHHHHhhHhh--cCCCcEEEEEEecCCHHHHHHHHHHHHHH-------HHHHHhc-----C-C-
Q 002937 502 -EEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILTRN-------YQILTRR-----G-G- 564 (864)
Q Consensus 502 -~~~~~~L~~~l~~~~lrr~k~dv~~--~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~-------~~~l~~~-----~-~- 564 (864)
......+.+++...+.|+.+.+|.. .+||..+.+....+++.+..+|+...... ...+.+. . .
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 1334467788889999999988876 47999899999999999888877543321 1112210 1 0
Q ss_pred -----CcchHHHHHHHHHHHhCccc
Q 002937 565 -----AQISLINVVMELRKLCCHPY 584 (864)
Q Consensus 565 -----~~~~~~~~~~~lrk~~~hp~ 584 (864)
....+.+.+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12346788899999999994
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=2.8e-30 Score=291.82 Aligned_cols=362 Identities=20% Similarity=0.279 Sum_probs=266.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCC-e
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQM-N 360 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~-~ 360 (864)
..+|||||.++++-+...+..+++|++..++|.|||+.++.++..+.. ++||||| ..++.||.+.+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 368999999999766565555889999999999999999999988744 3999999 567799998888877432 2
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCC-CcEEEccHHHHHhcc--cccCCcceeEEEeccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvitty~~~~~~~--~~l~~~~w~~vIvDEa 437 (864)
+..+.|.... .. ..|.++||+++.+.. ..+..-+|++||+||+
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333332211 11 469999999998752 3333447999999999
Q ss_pred ccccCcccHHHHHHHhccccc-EEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHH
Q 002937 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (864)
Q Consensus 438 H~lkn~~s~~~~~l~~l~~~~-rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~ 516 (864)
|++.....+.. +..+...+ +|+|||||...+...+..+..++.|-.+
T Consensus 156 Hh~~a~~~~~~--~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy------------------------------ 203 (442)
T COG1061 156 HHLPAPSYRRI--LELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY------------------------------ 203 (442)
T ss_pred ccCCcHHHHHH--HHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe------------------------------
Confidence 99986554433 33344455 9999999975553333333333332222
Q ss_pred HHHH-HhhHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 517 LRRV-KKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 517 lrr~-k~dv~-~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
... ++.+. ..|.|.....+.+.++......|..........+..... ...
T Consensus 204 -~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------------------- 255 (442)
T COG1061 204 -EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRA---------------------- 255 (442)
T ss_pred -ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----hhH----------------------
Confidence 111 11222 368899999999999999988888776655444332221 000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
.............|+..+..++.... .+.+++||+......+.+...|...|+ ...++|.++..+|.++++.|..++
T Consensus 256 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 256 -ENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred -HHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 01111223345677888888888766 789999999999999999999998888 999999999999999999998865
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri-GQ~~~--V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
+.+|++++.+++|+|++.|+++|+..+.-++..++|++||+.|. .+++. +..|-+++..+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 45899999999999999999999999999999999999999994 34443 7778888888888877655543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.9e-29 Score=289.47 Aligned_cols=339 Identities=14% Similarity=0.164 Sum_probs=229.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc--CCC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~--p~~ 359 (864)
...|+|||.+++.-+. .+.++|+..+||+|||++++.++..+...+.+++||+||. .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3689999999986552 4567899999999999998777666555555599999995 77799999999976 222
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~ 439 (864)
.+....|... .....+|+|+|++.+.+....+ --.+++||+||||+
T Consensus 188 ~~~~i~~g~~---------------------------------~~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTA---------------------------------KDTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCcc---------------------------------cCCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhc
Confidence 2222222111 0124689999999987543221 12678999999999
Q ss_pred ccCcccHHHHHHHhc-ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHH
Q 002937 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (864)
Q Consensus 440 lkn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lr 518 (864)
+... .....+..+ ++.++++|||||....... ..+..++.|-... .. ..++ +
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~i~~~-----------v~----~~~l---i------ 286 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGDIFKP-----------VT----TSQL---M------ 286 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCCceEE-----------ec----HHHH---H------
Confidence 9753 344555666 4678999999995432211 1111111111100 00 0000 0
Q ss_pred HHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchH
Q 002937 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (864)
Q Consensus 519 r~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~ 598 (864)
+. ..+.+.....+.+..++.....+. .. .. .+
T Consensus 287 --~~---g~l~~~~~~~v~~~~~~~~~~~~~-------------~~---~~---------------------------~~ 318 (501)
T PHA02558 287 --EE---GQVTDLKINSIFLRYPDEDRVKLK-------------GE---DY---------------------------QE 318 (501)
T ss_pred --hC---CCcCCceEEEEeccCCHHHhhhhc-------------cc---ch---------------------------HH
Confidence 00 122333334444444432111000 00 00 00
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCce
Q 002937 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (864)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~ 678 (864)
.+..+.....+...+.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|.++++.|+.+.. .
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~--~ 396 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG--I 396 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC--e
Confidence 11122334456667777777777788999999999999999999999999999999999999999999999975332 2
Q ss_pred EEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC-cEEEEEEEeCC
Q 002937 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRG 736 (864)
Q Consensus 679 v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy~lv~~~ 736 (864)
+++.|++..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.++-.-
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 34444599999999999999999999999999999999999998765 68999998643
No 27
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=8.6e-25 Score=254.03 Aligned_cols=318 Identities=17% Similarity=0.248 Sum_probs=215.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcC-----CCC-ceEEEecc-ccHHHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~-----~~~-~~LIV~P~-sll~qW~~E~~~~~ 356 (864)
++.|+|..++..+ ..+++.|+..+||+|||++. +.++..+... ..+ .+|||+|. .|..|+.+++.++.
T Consensus 152 ~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 6889999998765 57889999999999999986 3444444332 123 47999995 56688999999887
Q ss_pred CC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEE
Q 002937 357 PQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (864)
Q Consensus 357 p~--~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~v 432 (864)
.. +++.+.+|........... ....+|+|+|++.+..... .+......+|
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 43 5555555554433322221 1246899999988754321 1222356789
Q ss_pred EecccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+||||++.... ..+.+.+..+.. ...+++|||.- .++..+..
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~------------------------------ 327 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR------------------------------ 327 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH------------------------------
Confidence 999999987543 233444555543 45689999951 11111100
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
.++ ..-| ..+.+.... .... . .+++ ..
T Consensus 328 ----~l~---------~~~~----v~i~vg~~~--l~~~----------------~---------~i~q---~~------ 354 (545)
T PTZ00110 328 ----DLC---------KEEP----VHVNVGSLD--LTAC----------------H---------NIKQ---EV------ 354 (545)
T ss_pred ----HHh---------ccCC----EEEEECCCc--cccC----------------C---------CeeE---EE------
Confidence 000 0000 001110000 0000 0 0000 00
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
..+....|...|..++..+...+.++|||++....++.|...|...|++...++|.++..+|..+++.
T Consensus 355 ------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 355 ------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred ------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 00112345666777777766678899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
|+++... +|++|.++++|||++.+++||+||+++++..++||+||++|.|.+-. +|.|++.+
T Consensus 423 F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 423 FKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred HhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9875543 79999999999999999999999999999999999999999997654 45566664
No 28
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.7e-24 Score=248.56 Aligned_cols=308 Identities=18% Similarity=0.172 Sum_probs=207.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..++|+|.++++-+ ..++++++..+||+|||+..+.-+ +.. .+..|||+|. +++.++.+.+... +..+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~--l~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPA--LCS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHH--HHc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46899999999876 467799999999999998653322 222 3578999995 6778888888765 45555
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc---ccc-CCcceeEEEecccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~---~~l-~~~~w~~vIvDEaH 438 (864)
.+.+.........-.. ......++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~----------------------~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLT----------------------DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 5555543332111100 001235789999999986533 222 33467899999999
Q ss_pred cccCccc-------HHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 002937 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (864)
Q Consensus 439 ~lkn~~s-------~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~ 511 (864)
.+...+. .+......+.....++|||||-.....++...+.+-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865432 11222233445678999999965444444444333222211000 0
Q ss_pred HhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCC
Q 002937 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (864)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~ 591 (864)
.-|.. .+.+.-..
T Consensus 197 ---------------~r~nl-~~~v~~~~--------------------------------------------------- 209 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRKT--------------------------------------------------- 209 (470)
T ss_pred ---------------CCCCc-EEEEEeCC---------------------------------------------------
Confidence 00100 00000000
Q ss_pred CccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhc
Q 002937 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (864)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn 671 (864)
+..+..+.+++.+ ...+.++||||......+.+...|...|+++..++|+++..+|..+++.|.
T Consensus 210 ---------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 210 ---------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred ---------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0011112222221 124677899999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 672 ~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
.+.. .+|++|.++|+|||++.+++||+|++|.++..+.|++||++|.|+...+.+|
T Consensus 274 ~g~~---~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDEI---QVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCC---cEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 6544 3799999999999999999999999999999999999999999988766554
No 29
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=235.54 Aligned_cols=408 Identities=18% Similarity=0.247 Sum_probs=235.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecc-ccHHHHHHHHHHHcCCCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~-sll~qW~~E~~~~~p~~~~ 361 (864)
..||+||.+-+.-. . ++|+|+|.+||+|||+.|+.++...++.. .+++++.||. .++.|....|...+-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987544 3 89999999999999999988877666654 4699999996 4556666777776633444
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCC---cceeEEEecccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~---~~w~~vIvDEaH 438 (864)
....|+...+... .......+|++.|++.+..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r--------------------------~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNR--------------------------GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCch--------------------------hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 4444443222110 01224568999999999887554333 348999999999
Q ss_pred cccCccc--HHHHHHHhcc--cccEEEeecCCCCCCHhHHHhhhhhcCCCC-CCChHHHHHHHhcc------------ch
Q 002937 439 RLKNKDS--KLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGK-FGSLEEFQEEFKDI------------NQ 501 (864)
Q Consensus 439 ~lkn~~s--~~~~~l~~l~--~~~rllLTgTP~~n~~~el~~ll~~l~p~~-~~~~~~f~~~~~~~------------~~ 501 (864)
|...+.+ .....+...+ ....|+|||||= ++.....+.+.-|.... ......-...|... ..
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 9865443 3343444443 236799999997 66666555444333221 00111112222110 11
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcE---EE-EEEe------cCCHHHHH-HHHHHHHH-HHHHHHhcCCCcchH
Q 002937 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKK---EL-ILRV------ELSSKQKE-YYKAILTR-NYQILTRRGGAQISL 569 (864)
Q Consensus 502 ~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~---~~-~v~v------~ls~~q~~-~Y~~i~~~-~~~~l~~~~~~~~~~ 569 (864)
......|..+++|++.+-....+.. +.... +. ++.. .....|+- +|...+.. +...+...+-. .
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir---~ 344 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIE-ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR---F 344 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccc-cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh---h
Confidence 2334556677777665443222211 00000 00 0000 00001110 11111111 00001000000 0
Q ss_pred HHHHHHHHHHhCcc----cccCCCCCCccC-chH---HHHHh----hhcccHHHHHHHHHHHHHHc--CceEEEEeccHH
Q 002937 570 INVVMELRKLCCHP----YMLEGVEPDIED-TNE---SFKQL----LESSGKLQLLDKMMVKLKEQ--GHRVLIYSQFQH 635 (864)
Q Consensus 570 ~~~~~~lrk~~~hp----~l~~~~~~~~~~-~~~---~~~~l----~~~s~Kl~~l~~ll~~l~~~--g~kvlIFsq~~~ 635 (864)
.+.+..+.....-- ++....+..... ... .+..+ -...+|+..|.++|...... ..|+|||+.++.
T Consensus 345 ~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~ 424 (746)
T KOG0354|consen 345 VDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRE 424 (746)
T ss_pred HHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHH
Confidence 01110000000000 000000000000 000 00011 12478999999999876653 579999999999
Q ss_pred HHHHHHHHHhh---CCCcEEEEec--------cCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCC
Q 002937 636 MLDLLEDYLTF---KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS 704 (864)
Q Consensus 636 ~ld~L~~~L~~---~g~~~~~i~G--------~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~ 704 (864)
.++.|..+|.. .|++...+-| +++..+.+++++.|+++... +|++|..|.||||+..||.||.||.
T Consensus 425 sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~ 501 (746)
T KOG0354|consen 425 SALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDY 501 (746)
T ss_pred HHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecC
Confidence 99999999872 3556666655 47788999999999986554 8999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHhCCCCcEEEEEEEe
Q 002937 705 DWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (864)
Q Consensus 705 ~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 734 (864)
.-||...+||+|| +|.-+. .++.|.+
T Consensus 502 ~snpIrmIQrrGR-gRa~ns---~~vll~t 527 (746)
T KOG0354|consen 502 SSNPIRMVQRRGR-GRARNS---KCVLLTT 527 (746)
T ss_pred CccHHHHHHHhcc-ccccCC---eEEEEEc
Confidence 9999999999999 775444 4444444
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=4e-24 Score=245.85 Aligned_cols=314 Identities=18% Similarity=0.282 Sum_probs=216.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCC-ceEEEecc-ccHHHHHHHHHHHc---C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~-~~LIV~P~-sll~qW~~E~~~~~---p 357 (864)
.++.|+|.+++..+ ..+++.|+..+||+|||... +.++..+.....+ ..||+||. .+..||.+++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 36889999999877 57889999999999999875 4444444333222 68999995 66689999988764 5
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEec
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvD 435 (864)
+.++..++|.......+... ....+|+|+|++.+..... .+.--.+++||+|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 68888888876554333221 1357899999998865322 2223367899999
Q ss_pred ccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 002937 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (864)
Q Consensus 436 EaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l 512 (864)
|||++-..+ ..+...+..+.. ...+++|||+-. ++..+ .
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l----------------------------------~ 196 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAI----------------------------------S 196 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHH----------------------------------H
Confidence 999986543 233344444443 356999999721 11000 0
Q ss_pred hHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
..++ . -| ..+.+..... ... +. .+.+.
T Consensus 197 ~~~~-----~-----~~----~~i~~~~~~~--------------------~~~---------i~---~~~~~------- 223 (460)
T PRK11776 197 QRFQ-----R-----DP----VEVKVESTHD--------------------LPA---------IE---QRFYE------- 223 (460)
T ss_pred HHhc-----C-----CC----EEEEECcCCC--------------------CCC---------ee---EEEEE-------
Confidence 0000 0 00 0011110000 000 00 00000
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
+....|+..|..++... .+.++||||+....++.+.+.|...|+++..++|.++..+|+.+++.|.+
T Consensus 224 -----------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~ 290 (460)
T PRK11776 224 -----------VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN 290 (460)
T ss_pred -----------eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 01123667777777543 35689999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
+... +|++|.++++|||++++++||+||.+.++..+.||+||++|.|+.-. .|.|++.+
T Consensus 291 g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 291 RSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 5443 79999999999999999999999999999999999999999997643 45566553
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=3.7e-24 Score=246.74 Aligned_cols=314 Identities=18% Similarity=0.275 Sum_probs=211.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC--------CCceEEEecc-ccHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~--------~~~~LIV~P~-sll~qW~~E~~~ 354 (864)
.++++|.+++..+ ..|+++|++..||+|||+.. +.++..+.... ....|||+|. .+..|+.+.+..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999866 67899999999999999876 44445554332 2368999995 666888888887
Q ss_pred HcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCccee
Q 002937 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (864)
Q Consensus 355 ~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~ 430 (864)
+.. ++++..++|+.......+.. ....++|+|+|++.+..... .+..-..+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 753 56777888865443332221 11357899999999854322 11122457
Q ss_pred EEEecccccccCccc--HHHHHHHhcc---cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHH
Q 002937 431 CMIVDEGHRLKNKDS--KLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (864)
Q Consensus 431 ~vIvDEaH~lkn~~s--~~~~~l~~l~---~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 505 (864)
+|||||+|++.+.+- .....+..+. ....+++|||.- +++.++... +
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~~~------------------~--------- 291 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLAKQ------------------W--------- 291 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHHHH------------------h---------
Confidence 899999999976432 2333444442 235799999952 111111100 0
Q ss_pred HHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc
Q 002937 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (864)
Q Consensus 506 ~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l 585 (864)
+ ..+. .+.+.... ..... +. .|-+
T Consensus 292 ----------~-----------~~~~---~v~~~~~~-------------------~~~~~---------~~---~~~~- 315 (475)
T PRK01297 292 ----------T-----------TDPA---IVEIEPEN-------------------VASDT---------VE---QHVY- 315 (475)
T ss_pred ----------c-----------cCCE---EEEeccCc-------------------CCCCc---------cc---EEEE-
Confidence 0 0000 01110000 00000 00 0000
Q ss_pred cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHH
Q 002937 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~ 665 (864)
.+..+.|...|..++.. ..+.++|||++....++.|.+.|...|+++..++|.++..+|.+
T Consensus 316 -----------------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 316 -----------------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred -----------------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 00123344555555543 23469999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+++.|+++.. .+|++|+++++|||++++++||+|+.++|+..+.|+.||++|.|+... ++.|+..
T Consensus 377 ~~~~Fr~G~~---~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 377 TLEGFREGKI---RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred HHHHHhCCCC---cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 9999987544 389999999999999999999999999999999999999999998654 3344544
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=3.5e-24 Score=248.31 Aligned_cols=314 Identities=16% Similarity=0.219 Sum_probs=208.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcC--------CCCceEEEecc-ccHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~-~i~~l~~~--------~~~~~LIV~P~-sll~qW~~E~~ 353 (864)
..+.|+|.+++..+ ..|+++|+..+||+|||+..+. ++..+... .....|||+|. .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 36889999999776 4788999999999999988644 34443321 12368999996 56578888888
Q ss_pred HHcCC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcce
Q 002937 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 429 (864)
Q Consensus 354 ~~~p~--~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w 429 (864)
.+... +.+....|.......+... ...++|+|+|++.+..... .+..-..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 77643 4455555544332222111 1347899999988744221 2223356
Q ss_pred eEEEecccccccCcc--cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHH
Q 002937 430 QCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~--s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~ 507 (864)
.+||+||||++...+ ......+..+.....+++|||.-. .+..+ ...+.....
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~~~~--------------------- 326 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEKF---ASSLAKDII--------------------- 326 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCCCCE---------------------
Confidence 789999999986533 344455556666788999999621 11110 000000000
Q ss_pred HHHHHhHHHHHHHHhhHh-hcCCCc--EEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccc
Q 002937 508 LHRMLAPHLLRRVKKDVM-KELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~-~~lp~~--~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~ 584 (864)
.+ .+. ...+.. ....+.++
T Consensus 327 --------~i-----~~~~~~~~~~~v~q~~~~~~--------------------------------------------- 348 (518)
T PLN00206 327 --------LI-----SIGNPNRPNKAVKQLAIWVE--------------------------------------------- 348 (518)
T ss_pred --------EE-----EeCCCCCCCcceeEEEEecc---------------------------------------------
Confidence 00 000 000000 00111111
Q ss_pred ccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh-CCCcEEEEeccCCHHHH
Q 002937 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAER 663 (864)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~~R 663 (864)
...|...|.+++........++|||++....++.|.+.|.. .|+++..++|+++..+|
T Consensus 349 ---------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 349 ---------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKER 407 (518)
T ss_pred ---------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHH
Confidence 11233344445544333346899999999999999999974 69999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
..+++.|.++... +|++|.++++|||++.+++||+||+|.++..++|++||++|.|... .++.|++.+
T Consensus 408 ~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 408 REVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred HHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 9999999876544 7999999999999999999999999999999999999999999754 344556543
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=3.8e-24 Score=244.97 Aligned_cols=324 Identities=16% Similarity=0.248 Sum_probs=211.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCC-------CCceEEEecc-ccHHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER-------ISPHLVVAPL-STLRNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~-i~~l~~~~-------~~~~LIV~P~-sll~qW~~E~~~~ 355 (864)
.+.|+|.+++..+ ..++++|+..+||+|||+..+.. +..+.... ...+|||+|. .+..||.+++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 6889999999776 46789999999999999886444 44443221 1158999995 5668999999887
Q ss_pred cC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeE
Q 002937 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (864)
Q Consensus 356 ~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~ 431 (864)
.. ++.+..+.|........... ...++|+|+|++.+.... ..+..-..++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 45666666655433222111 135789999999885432 2223345789
Q ss_pred EEecccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 432 vIvDEaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
|||||||++-... ..+...+..+.. ...+++|||+-. .+.++.. .+..... ...
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---~~~~~~~-----------~i~-------- 209 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE---KLLHNPL-----------EIE-------- 209 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH---HHcCCCe-----------EEE--------
Confidence 9999999986543 223334444543 346999999621 1111110 0000000 000
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
+ .... ...+........+
T Consensus 210 -------~---~~~~--~~~~~i~~~~~~~-------------------------------------------------- 227 (456)
T PRK10590 210 -------V---ARRN--TASEQVTQHVHFV-------------------------------------------------- 227 (456)
T ss_pred -------E---eccc--ccccceeEEEEEc--------------------------------------------------
Confidence 0 0000 0000000000000
Q ss_pred CCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHH
Q 002937 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (864)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 668 (864)
....|..+|..++.. ...+++|||++.....+.|.+.|...|++...++|.++..+|.++++
T Consensus 228 ----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 228 ----------------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred ----------------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 011122333333332 23468999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 002937 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 669 ~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
.|.++.. .+|++|+++++|||++++++||+||++.++..|+|++||++|.|....+. .|++.+ |..++...++
T Consensus 290 ~F~~g~~---~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 290 DFKSGDI---RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL--SLVCVD--EHKLLRDIEK 362 (456)
T ss_pred HHHcCCC---cEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEE--EEecHH--HHHHHHHHHH
Confidence 9987543 38999999999999999999999999999999999999999999875443 344432 4445544443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=5e-24 Score=242.34 Aligned_cols=313 Identities=16% Similarity=0.221 Sum_probs=210.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCC--------CCceEEEecc-ccHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~-i~~l~~~~--------~~~~LIV~P~-sll~qW~~E~~~ 354 (864)
.+.|.|.+++.-+ ..+++.|+..++|+|||+..+.. +..+.... ...+||++|. .+..|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 6789999998766 57889999999999999986443 34443221 1258999995 566888888877
Q ss_pred HcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCccee
Q 002937 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (864)
Q Consensus 355 ~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~ 430 (864)
+.. ++++..++|........... ...++|+|+|++.+.... ..+..-.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 763 56777777765433222111 124689999999885432 223334578
Q ss_pred EEEecccccccCcc--cHHHHHHHhcc---cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHH
Q 002937 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (864)
Q Consensus 431 ~vIvDEaH~lkn~~--s~~~~~l~~l~---~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 505 (864)
++|+||||++-... ......+..+. ....+++|||.-. .+.++.
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~------------------------------ 208 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELA------------------------------ 208 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHH------------------------------
Confidence 99999999986543 22333344443 2235889999621 111100
Q ss_pred HHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc
Q 002937 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (864)
Q Consensus 506 ~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l 585 (864)
.. .+..... +.+.-.. . .... + .+.++
T Consensus 209 -------~~------------~~~~p~~--i~v~~~~--~-----------------~~~~---------i----~~~~~ 235 (423)
T PRK04837 209 -------FE------------HMNNPEY--VEVEPEQ--K-----------------TGHR---------I----KEELF 235 (423)
T ss_pred -------HH------------HCCCCEE--EEEcCCC--c-----------------CCCc---------e----eEEEE
Confidence 00 0000000 1110000 0 0000 0 00000
Q ss_pred cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHH
Q 002937 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~ 665 (864)
.. ....|+..|..++.. ....++|||++....++.|.+.|...|+++..++|.++..+|..
T Consensus 236 ~~-----------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 YP-----------------SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred eC-----------------CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 00 012355566666654 23679999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+++.|+++... +|++|+++++|||++.+++||+||+|+++..|.|++||++|.|+.-.+ +.|++.
T Consensus 297 ~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 99999876543 899999999999999999999999999999999999999999976443 445554
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=1.7e-23 Score=239.02 Aligned_cols=312 Identities=15% Similarity=0.193 Sum_probs=207.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcC-----CCCceEEEecc-ccHHHHHHHHHHHc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~-~i~~l~~~-----~~~~~LIV~P~-sll~qW~~E~~~~~ 356 (864)
.+++++|.+++..+ ..++++|+..++|+|||+.++. ++..+... +...+||++|. .+..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999999776 4678899999999999988644 34444321 12378999996 56678888777765
Q ss_pred C--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEE
Q 002937 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (864)
Q Consensus 357 p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~v 432 (864)
. ++++..++|........... ...++|+|+|++.+.... ..+....+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 57788888765543321111 135689999998886432 22233456789
Q ss_pred EecccccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+||||++...+ .........+. ....+++|||+-...+.++.. .
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~-------------- 199 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------R-------------- 199 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------H--------------
Confidence 999999986543 22222222332 235689999973211111110 0
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
+ +.... .+.+....... ....|-+....
T Consensus 200 --------------~---~~~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~~- 227 (434)
T PRK11192 200 --------------L---LNDPV--EVEAEPSRRER--------------------------------KKIHQWYYRAD- 227 (434)
T ss_pred --------------H---ccCCE--EEEecCCcccc--------------------------------cCceEEEEEeC-
Confidence 0 00000 01111100000 00000000000
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
....|..+|..++.. ....++|||++....++.|...|...|+++..++|.++..+|..+++.
T Consensus 228 ---------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 228 ---------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred ---------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 012345555555542 245799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
|+++.. .+|++|+++++|||++.+++||+||+++++..++|++||++|.|....+.+
T Consensus 291 f~~G~~---~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDGRV---NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCCCC---cEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 987544 489999999999999999999999999999999999999999988655443
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=2.8e-23 Score=243.44 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=210.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC-CCceEEEecc-ccHHHHHHHHHHHc---C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWA---P 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~-~~~~LIV~P~-sll~qW~~E~~~~~---p 357 (864)
.++.|+|.+++..+ ..++.+|+..+||+|||++. +.++..+.... ...+||+||. .+..||.+++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999999776 46789999999999999886 44444443332 2368999995 66689999987764 5
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEec
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvD 435 (864)
+++++.++|.......++.. ....+|+|+|++.+.... ..+.--...+||+|
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888776544333221 124689999998885432 22323356789999
Q ss_pred ccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 002937 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (864)
Q Consensus 436 EaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l 512 (864)
|||.+-+.. ......+..+.. ...+++|||.- ..+.++.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------------------------- 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------------------------- 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH-------------------------------------
Confidence 999886543 234445555543 34689999951 1111100
Q ss_pred hHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
..+ +..... +.+.-.. .... ...+.|.
T Consensus 199 ~~~------------l~~~~~--i~i~~~~---------------------~~~~-----------~i~q~~~------- 225 (629)
T PRK11634 199 RRF------------MKEPQE--VRIQSSV---------------------TTRP-----------DISQSYW------- 225 (629)
T ss_pred HHH------------cCCCeE--EEccCcc---------------------ccCC-----------ceEEEEE-------
Confidence 000 000000 0000000 0000 0000000
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
.+....|...|..+|.. ....++||||+.....+.|.+.|...|+....++|.++..+|..++++|..
T Consensus 226 ----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 226 ----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred ----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 00112355555566543 234689999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
+.. .+|++|++++.|||++.+++||+||+|.++..++|++||++|.|..-.+.
T Consensus 294 G~~---~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 294 GRL---DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred CCC---CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 544 38999999999999999999999999999999999999999999765433
No 37
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.2e-24 Score=225.71 Aligned_cols=340 Identities=18% Similarity=0.325 Sum_probs=237.9
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHHc--CC
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--PQ 358 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~~--p~ 358 (864)
+...+||||...++-| +.-...+.||+.-++|.|||+..+..+..+ .+.+||+|..++ +.||..+|..|. .+
T Consensus 299 Pst~iRpYQEksL~KM-FGNgRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHH-hCCCcccCceEEEecCCCCceeeeeeeeee----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 4468999999998877 332345579999999999999887766654 247899999654 589999999998 23
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh----------cccccCCcc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----------DSASLKPIK 428 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~----------~~~~l~~~~ 428 (864)
-.+..|+.+.+.+ ......|+|+||.++.. ...++....
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 4555666554432 12356799999999843 245677889
Q ss_pred eeEEEecccccccCcccHHHH-HHHhcccccEEEeecCCCCCCHhHHHhhhhhc-CCCCCCChHHHHHHHhccchHHHHH
Q 002937 429 WQCMIVDEGHRLKNKDSKLFS-SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~~~-~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l-~p~~~~~~~~f~~~~~~~~~~~~~~ 506 (864)
|.++|+||+|-+- ++.++ .+..+++..+|+||||-+..+ |=..=|||| .|..+. ..|-
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnWm--------- 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANWM--------- 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccHH---------
Confidence 9999999999764 34444 444457788899999986543 111223333 233321 1111
Q ss_pred HHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 507 ~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
.|.+ ...+....-..|+|+||+. +|+..+..+... |.+
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k------------------r~l------- 520 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK------------------RML------- 520 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh------------------hhe-------
Confidence 1100 0134455667899999974 565554432110 000
Q ss_pred CCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
-.+....|++...-|++....+|.|+||||..+-.|....-.| |-+ .|.|.+++.+|-++
T Consensus 521 ---------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 521 ---------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKI 580 (776)
T ss_pred ---------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHH
Confidence 0122567888888889988899999999999877665544444 334 46899999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC-CcchhhHHHHHHHHhCCC----CcEEEEEEEeCCCHHHH
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 741 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~RiGQ~----~~V~Vy~lv~~~TiEe~ 741 (864)
++.|+..+.-.-+| -+++|...|+|+.|+.+|-..+.. +-.+..||+||+.|--.. -++..|-||+++|.|..
T Consensus 581 LqnFq~n~~vNTIF--lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIF--LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccceEE--EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99998765544434 489999999999999999998876 566789999999996532 25889999999999854
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=2.3e-23 Score=242.96 Aligned_cols=312 Identities=17% Similarity=0.266 Sum_probs=209.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCC--------CCceEEEecc-ccHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~-i~~l~~~~--------~~~~LIV~P~-sll~qW~~E~~~ 354 (864)
.+.|.|..++..+ ..++++|+..++|+|||+..+.. +..+.... ...+|||+|. .+..|+.+++.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 6889999999876 57899999999999999887554 44443211 1378999995 666889999988
Q ss_pred HcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcce
Q 002937 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (864)
Q Consensus 355 ~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w 429 (864)
+.. ++.+..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 874 35667777765433221111 1247899999998865322 2333356
Q ss_pred eEEEecccccccCcc--cHHHHHHHhcc---cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHH
Q 002937 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~--s~~~~~l~~l~---~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~ 504 (864)
++|||||||++-... ..+...+..+. ....+++|||.- +.+.++.
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l~----------------------------- 210 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLELA----------------------------- 210 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHHH-----------------------------
Confidence 789999999985432 22333344443 345689999952 1111110
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEec-CCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~-ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp 583 (864)
..++ .-|. ...+... .+. . .++ |-
T Consensus 211 --------~~~l----------~~p~--~i~v~~~~~~~----------------------~---------~i~----q~ 235 (572)
T PRK04537 211 --------YEHM----------NEPE--KLVVETETITA----------------------A---------RVR----QR 235 (572)
T ss_pred --------HHHh----------cCCc--EEEeccccccc----------------------c---------cee----EE
Confidence 0000 0000 0000000 000 0 000 00
Q ss_pred cccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHH
Q 002937 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (864)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R 663 (864)
+.+. ....|+..|..++.. ..+.++|||++....++.|.+.|...|+++..++|.++..+|
T Consensus 236 ~~~~-----------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYFP-----------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEec-----------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 0000 012244445555543 347799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
..+++.|.++.. .+|++|+++++|||++.+++||+||.++++..++|++||++|.|....+. .|++.
T Consensus 297 ~~il~~Fr~G~~---~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 297 ESLLNRFQKGQL---EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred HHHHHHHHcCCC---eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 999999986543 48999999999999999999999999999999999999999999865443 34543
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=4e-23 Score=243.42 Aligned_cols=304 Identities=18% Similarity=0.179 Sum_probs=203.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..++|+|.+++..+ ..++++++..+||.|||+.....+ +.. .+.+|||+|. +++.++.+.+... +....
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpa--l~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPA--LVL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHH--HHc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36899999999866 478899999999999998754322 222 3579999995 6778888888765 45555
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEaH~l 440 (864)
.+.+..........++- ......+++++|++.+... ...+...+++++||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554333221111100 0113567999999987632 23344456789999999998
Q ss_pred cCccc---HHHHHH----HhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 441 kn~~s---~~~~~l----~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
-..+. ..+..+ ..+.....++||||+-.....++...+.+-+|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65332 112222 23345567999999854443444433332221110000 0
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.-|.....++
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------------- 218 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------------- 218 (607)
T ss_pred -------------CCCcceeeee---------------------------------------------------------
Confidence 0000000000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
....++..+..++.. ..+.++||||+.....+.+...|...|+++..++|+++..+|.++++.|..+
T Consensus 219 -----------~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 219 -----------EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred -----------eccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 000111122222222 3477999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
... +|++|.++|.|||++.++.||+||.|.++..+.|+.||++|.|....+.
T Consensus 286 ~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 DLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 443 7999999999999999999999999999999999999999999765543
No 40
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=7.5e-23 Score=225.65 Aligned_cols=311 Identities=20% Similarity=0.294 Sum_probs=224.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhc------CCCCc-eEEEecccc-HHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG------ERISP-HLVVAPLST-LRNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~------~~~~~-~LIV~P~sl-l~qW~~E~~~~ 355 (864)
.+.|-|..+.-.+ ..|+.+|....+|+|||+. .|-.+.++.. .+.+| +||++|..- -.|-++++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 5667777765444 6789999999999999987 3566666654 22345 899999654 47788889988
Q ss_pred cCCCe--EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeE
Q 002937 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (864)
Q Consensus 356 ~p~~~--~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~ 431 (864)
...+. .++++|.......++.. ....+|+|+|+..+.... ..+.-.+..+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86554 66667766555544443 246789999999986543 3344446789
Q ss_pred EEeccccccc--CcccHHHHHHHhc-ccc-cEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHH
Q 002937 432 MIVDEGHRLK--NKDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (864)
Q Consensus 432 vIvDEaH~lk--n~~s~~~~~l~~l-~~~-~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~ 507 (864)
+|+|||.++- ....+..+.+..+ .+. ..++-|||-- .
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~----------------------------------- 283 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWP----K----------------------------------- 283 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeecc----H-----------------------------------
Confidence 9999999995 4567888888888 444 3688888840 1
Q ss_pred HHHHHhHHHHHHHHhhHhhcCCCcEEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v-~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
-+|.+.++.+. -+....+... ++.. ...++|+
T Consensus 284 --------~v~~lA~~fl~--~~~~i~ig~~~~~~a------------------------------~~~i~qi------- 316 (519)
T KOG0331|consen 284 --------EVRQLAEDFLN--NPIQINVGNKKELKA------------------------------NHNIRQI------- 316 (519)
T ss_pred --------HHHHHHHHHhc--CceEEEecchhhhhh------------------------------hcchhhh-------
Confidence 11122222221 1122222211 1000 0001111
Q ss_pred CCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHH-HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHH
Q 002937 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~-~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~ 665 (864)
-..+...+|...|.++|.... ..+.|+||||+.....+-|...|...||+...|+|..++.+|..
T Consensus 317 --------------ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 317 --------------VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred --------------hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 111224568888888888876 44569999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
+++.|..+... +|++|++++.|||++.+++||+||+|-|...|++|+||.+|-|++-...
T Consensus 383 ~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 383 VLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 99999776555 8999999999999999999999999999999999999999988765443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=8.7e-23 Score=241.41 Aligned_cols=304 Identities=19% Similarity=0.220 Sum_probs=209.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~ 362 (864)
.+++|+|.++++-+ ..+++++++.+||.|||+.+...+ +.. .+.++||+| .+++.++.+.+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999876 467899999999999998864332 222 357899999 46778888888875 45666
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEaH~l 440 (864)
.++++........... .......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~----------------------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEK----------------------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 6666544332111110 00123578999999988542 23445567889999999998
Q ss_pred cCccc-------HHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 441 kn~~s-------~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
...+. ++......+.....++||||+-.....++...+.+-.+..+.. .+
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 64332 2223333444556899999985444444444333222111100 00
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.-|.....++
T Consensus 197 -------------~r~nl~~~v~--------------------------------------------------------- 206 (591)
T TIGR01389 197 -------------DRPNLRFSVV--------------------------------------------------------- 206 (591)
T ss_pred -------------CCCCcEEEEE---------------------------------------------------------
Confidence 0011100000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
....+...+.+++... .+.+.||||......+.+.++|...|+++..++|+++.++|..+++.|..+
T Consensus 207 -----------~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 207 -----------KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred -----------eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0011222333344332 267899999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
.. .+|++|.+.|.|||+++++.||+|++|.|+..+.|++||++|.|+...+.
T Consensus 274 ~~---~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 DV---KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CC---cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 43 48999999999999999999999999999999999999999999766554
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=1.1e-22 Score=230.55 Aligned_cols=316 Identities=18% Similarity=0.262 Sum_probs=205.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
..+.|+|..++..+ ..+.+.|+..+||+|||+.++..+...... ....+||++|. .+..|+.+.+..+.. .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999999876 577889999999999998875444443332 23479999995 555777777777653 3
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDE 436 (864)
..+....|....+...... ....+|+|+|++.+.... ..+..-.+++||+||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4455555654433322211 123589999998875321 122233568999999
Q ss_pred cccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
+|++.... ......+..+.. ...+++|||+- +...++.. .|.. .
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~~--------------~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFMR--------------D 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHcC--------------C
Confidence 99986432 344455555543 45799999962 11111100 0000 0
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
+..+ ..+.+- ..+.......+.+. .
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~--~--------------------------------------------------- 250 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVE--K--------------------------------------------------- 250 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecC--h---------------------------------------------------
Confidence 0000 000000 00000000111000 0
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
...|...+..++.. ....++||||+....++.+.+.|...++.+..++|+++..+|+.+++.|+++
T Consensus 251 ------------~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 00122222333322 1346899999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.. .+|++|.++++|||++.+++||+||++.++..+.|++||++|.|.. -.++.|++..
T Consensus 317 ~~---~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 317 ST---RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CC---CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 43 4899999999999999999999999999999999999999998864 3455666654
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.9e-23 Score=214.26 Aligned_cols=322 Identities=21% Similarity=0.291 Sum_probs=231.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC-ceEEEeccccH-HHHHHHHHHHc--CCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~~-~~LIV~P~sll-~qW~~E~~~~~--p~~ 359 (864)
.+.+-|.+++-.. ..|+.+|.+.++|+|||.. +|-++..|+.+... ..||++|..-+ .|-...|+.++ -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888888655 6889999999999999987 68888888886544 56999997666 45566678775 457
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc---cCCcceeEEEecc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCMIVDE 436 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~---l~~~~w~~vIvDE 436 (864)
.+.++.|..+........ ..++||+|.|+..+...... +..-...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888899988776544332 24689999999999765442 2222456799999
Q ss_pred cccccCcc--cHHHHHHHhccccc-EEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKNKD--SKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~~~~-rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
|.++-|.. -.+-..|+.++..+ .+|.|||-- ..+.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt-----------------------------------~kv~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMT-----------------------------------KKVRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc-----------------------------------hhhHHHHhh--
Confidence 99998754 46667777776544 478899841 112222100
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.+-. ++.|.-+. .|+ .+..|.| -|++
T Consensus 256 -------------sl~~----p~~v~~s~----ky~----------------------tv~~lkQ----~ylf------- 281 (476)
T KOG0330|consen 256 -------------SLDN----PVKVAVSS----KYQ----------------------TVDHLKQ----TYLF------- 281 (476)
T ss_pred -------------ccCC----CeEEeccc----hhc----------------------chHHhhh----heEe-------
Confidence 1100 01111110 111 0111111 1111
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
+...-|-..|..+|.++ .|..+||||+...+.+.+.-+|+..|+....++|.++...|..+++.|+++
T Consensus 282 ----------v~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 282 ----------VPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred ----------ccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 11223445667777754 468999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHH
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~ 746 (864)
.-. +|++|+.++.|+|.+.+|.||+||.|-+...|++|.||..|.| +.-.+..||+. +|-..+++.
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 544 8999999999999999999999999999999999999999999 56667789988 454455544
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=4.3e-22 Score=235.97 Aligned_cols=311 Identities=17% Similarity=0.159 Sum_probs=205.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..+||+|.+++..+ ..|+.+|+..+||.|||+....-+. .. .+.+|||+|. +|+.++...+... ++...
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL--~~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPAL--IC--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHH--Hc--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 47999999999876 5788999999999999987533322 12 3579999995 6665455555442 56666
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc---ccccC----CcceeEEEec
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLK----PIKWQCMIVD 435 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~---~~~l~----~~~w~~vIvD 435 (864)
.+.+............ ........++++++|++.+... ...+. .....+||||
T Consensus 529 ~L~s~~s~~eq~~ilr--------------------~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQ--------------------ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHH--------------------HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 6666544332211110 0001124578999999987532 11121 1236789999
Q ss_pred ccccccCcccH---HHH----HHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 436 EGHRLKNKDSK---LFS----SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 436 EaH~lkn~~s~---~~~----~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
|||.+-..+.. -++ ....+.....++||||.-.....++...|.+..+..+.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 99998654321 112 222344556799999986555555555443322211100 00
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
.-|.....++. -. ..
T Consensus 651 ------------------~RpNL~y~Vv~--k~---kk------------------------------------------ 665 (1195)
T PLN03137 651 ------------------NRPNLWYSVVP--KT---KK------------------------------------------ 665 (1195)
T ss_pred ------------------CccceEEEEec--cc---hh------------------------------------------
Confidence 01111111110 00 00
Q ss_pred CCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHH
Q 002937 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (864)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 668 (864)
.+..+.+++... ..+...||||......+.+...|...|+++..++|+++..+|..+++
T Consensus 666 --------------------~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 666 --------------------CLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred --------------------HHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 001111222111 12457899999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEE
Q 002937 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (864)
Q Consensus 669 ~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 731 (864)
+|..+... +|++|.++|.|||++.++.||+|+.|-++..|.|++||++|.|+...+..|+
T Consensus 725 ~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99875543 7999999999999999999999999999999999999999999886665543
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=7.5e-22 Score=242.05 Aligned_cols=357 Identities=17% Similarity=0.208 Sum_probs=206.5
Q ss_pred CCCCchHHHHHHHHHHHhhcC-CCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec-cccHHHHHHHHHHHcCCC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~-~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 359 (864)
+..|||||.+||+.+...+.. .++++|.+.||+|||+++++++..+... ..+++||+|| ..|+.||.++|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999877666554 4678999999999999999998888754 3469999999 678899999999874321
Q ss_pred e--EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc-------ccCCccee
Q 002937 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (864)
Q Consensus 360 ~--~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~-------~l~~~~w~ 430 (864)
. +....+... +.. ........|+|+|++++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~------------------------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LED------------------------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhh------------------------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 100011000 000 0011246799999999865321 12234689
Q ss_pred EEEecccccccCcc----------------cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHH
Q 002937 431 CMIVDEGHRLKNKD----------------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 494 (864)
Q Consensus 431 ~vIvDEaH~lkn~~----------------s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~ 494 (864)
+||+|||||..... ...++.+..+....+|+|||||..++ .++|. ...+
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t-~~~FG------~pv~-------- 607 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT-TEIFG------EPVY-------- 607 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch-hHHhC------CeeE--------
Confidence 99999999963210 12233333333468899999997432 12221 0000
Q ss_pred HHhccchHHHHHHHHHHHhHHHHHHHHhhHhhc-CCCcEEEEEE----ecCC-HHHHHHHHHHHHHHHHHHHhcCCCcch
Q 002937 495 EFKDINQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (864)
Q Consensus 495 ~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~-lp~~~~~~v~----v~ls-~~q~~~Y~~i~~~~~~~l~~~~~~~~~ 568 (864)
... +.+.+. ...+.. -||....... +... ..+.+.|+..... +.....
T Consensus 608 ---~Ys-------l~eAI~--------DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~l---- 661 (1123)
T PRK11448 608 ---TYS-------YREAVI--------DGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLATL---- 661 (1123)
T ss_pred ---Eee-------HHHHHh--------cCCcccCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhccC----
Confidence 000 001110 011101 1333322211 0111 1111222211100 000000
Q ss_pred HHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHH-HHHHHHHHHH-cCceEEEEeccHHHHHHHHHHHhh
Q 002937 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-LDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTF 646 (864)
Q Consensus 569 ~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~-l~~ll~~l~~-~g~kvlIFsq~~~~ld~L~~~L~~ 646 (864)
.++.......+...+-....... +..++..+.. .+.|+||||....+++.+.+.|..
T Consensus 662 ---------------------~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 662 ---------------------EDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred ---------------------cHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00000000000000001111111 2223333322 236999999999998888777654
Q ss_pred C------CC---cEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHH
Q 002937 647 K------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 717 (864)
Q Consensus 647 ~------g~---~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR 717 (864)
. ++ .+..++|+++ ++++++++|.++... .++++++.+++|+|.+.+++||++++.-++..+.|++||
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGR 796 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGR 796 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhh
Confidence 2 22 3567899875 578899999875443 479999999999999999999999999999999999999
Q ss_pred HHHhCC---CCcEEEEEEE
Q 002937 718 AHRLGQ---TNKVMIFRLI 733 (864)
Q Consensus 718 ~~RiGQ---~~~V~Vy~lv 733 (864)
+.|... +....||.++
T Consensus 797 gtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hccCCccCCCceEEEEehH
Confidence 999865 5566777765
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=2.4e-21 Score=231.65 Aligned_cols=330 Identities=17% Similarity=0.183 Sum_probs=213.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc-CCCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~-p~~~~ 361 (864)
+|+++|.+++..+ ..|+++|+...||+|||+.. +.++..+........||++|. .+..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 67899999999999999886 455555555444489999995 55577778888876 35788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--------cccCCcceeEEE
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--------~~l~~~~w~~vI 433 (864)
.+|.|+....... . -....+|+|+|++++.... ..+. +.++||
T Consensus 112 ~~~~Gdt~~~~r~-~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEERR-W--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHHH-H--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 8888876543210 0 0123689999999986321 1122 347899
Q ss_pred ecccccccC-cccHHHHHHHhcc--------cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHH
Q 002937 434 VDEGHRLKN-KDSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (864)
Q Consensus 434 vDEaH~lkn-~~s~~~~~l~~l~--------~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~ 504 (864)
+||||.+.+ ..+.....+..+. ....+++|||. +++.++... ++. ..+
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~--l~g-~~~------------------ 219 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR--LIG-APV------------------ 219 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH--HcC-CCe------------------
Confidence 999999865 2333333333331 23578999995 233332211 110 000
Q ss_pred HHHHHHHHhHHHHHHHHhhHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp 583 (864)
..+.. .-|.............. . . ....+.. .|+
T Consensus 220 -----------------~~i~~~~~~~~~~~~~~~~p~~~-----~-~--------~~~~~~~---------~r~----- 254 (742)
T TIGR03817 220 -----------------VAVTEDGSPRGARTVALWEPPLT-----E-L--------TGENGAP---------VRR----- 254 (742)
T ss_pred -----------------EEECCCCCCcCceEEEEecCCcc-----c-c--------ccccccc---------ccc-----
Confidence 00000 11111111111111000 0 0 0000000 000
Q ss_pred cccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--------CCcEEEEe
Q 002937 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (864)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--------g~~~~~i~ 655 (864)
.....+..++.. +...+.++|||++.....+.|..+|... +.++..++
T Consensus 255 --------------------~~~~~~~~~l~~----l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 255 --------------------SASAEAADLLAD----LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred --------------------chHHHHHHHHHH----HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 000123333333 3345889999999999999998887653 56788999
Q ss_pred ccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 656 G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
|+++.++|.++.++|.++. +.+|++|++++.|||++..|+||+|+.|-+...+.|++||++|.|+... ++.++..
T Consensus 311 gg~~~~eR~~ie~~f~~G~---i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRDGE---LLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHcCC---ceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 9999999999999997644 3489999999999999999999999999999999999999999987643 3445555
Q ss_pred CCHHHHHHH
Q 002937 736 GSIEERMMQ 744 (864)
Q Consensus 736 ~TiEe~i~~ 744 (864)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667776554
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=2.8e-21 Score=235.75 Aligned_cols=322 Identities=19% Similarity=0.218 Sum_probs=200.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCC-------CCceEEEecc-ccHHHHHHHH--
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-------ISPHLVVAPL-STLRNWEREF-- 352 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~-------~~~~LIV~P~-sll~qW~~E~-- 352 (864)
..|+|+|.+++..+ ..+.++|+..+||+|||..++ .++..+.... ...+|+|+|. ++..|+.+.+
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 35999999998766 578899999999999999874 4455554321 1258999995 5556665533
Q ss_pred -----HHHc-------CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc
Q 002937 353 -----ATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (864)
Q Consensus 353 -----~~~~-------p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~ 420 (864)
..++ +++.+.+.+|+.......+.. ....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 3332 366788888876544322111 13568999999998532
Q ss_pred cc------ccCCcceeEEEecccccccCcc--cHHHHHH---Hhcc--cccEEEeecCCCCCCHhHHHhhhhhcCCCCCC
Q 002937 421 SA------SLKPIKWQCMIVDEGHRLKNKD--SKLFSSL---KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (864)
Q Consensus 421 ~~------~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l---~~l~--~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~ 487 (864)
.. .+. ..++||+||+|.+.+.. ..+...+ ..+. ...+++||||. .++.++... +......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~~---L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAKF---LVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHHH---hcCcccc
Confidence 11 122 35689999999987532 2222222 2222 34679999996 233333322 1111000
Q ss_pred ChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 002937 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (864)
Q Consensus 488 ~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~ 567 (864)
. . . .+. .-+...........+.++...
T Consensus 234 ~---------~-~------------r~~------~iv~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G---------E-P------------RDC------EIVDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C---------C-C------------Cce------EEEccCCCccceEEEeccCcc-------------------------
Confidence 0 0 0 000 000000000000001000000
Q ss_pred hHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh-
Q 002937 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (864)
Q Consensus 568 ~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~- 646 (864)
+.... .......+.+.|..+...++++||||+.....+.+...|..
T Consensus 261 -----------------l~~~~----------------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTP----------------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------ccccc----------------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00000 00001112234444445688999999999999999888875
Q ss_pred -----CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 647 -----~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
.+..+..++|+++.++|..+.+.|+++.. .+|++|.+++.|||++.+++||++++|.++..+.|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i---~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL---KVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCCC---eEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 24678999999999999999999987543 4899999999999999999999999999999999999999976
Q ss_pred -CCCCcEEEEE
Q 002937 722 -GQTNKVMIFR 731 (864)
Q Consensus 722 -GQ~~~V~Vy~ 731 (864)
|+.....++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4445555554
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=6.3e-21 Score=225.83 Aligned_cols=305 Identities=15% Similarity=0.246 Sum_probs=197.9
Q ss_pred CCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~--~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~~p--~ 358 (864)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|... ..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 479999999998886554332 4689999999999998765554444432 48999999654 4899999999986 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+++..++|+..........+. ......+|+|+|+..+.... .+ -+..+||+||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-cc--cccceEEEechh
Confidence 788888887554332111100 01235789999999886432 22 245799999999
Q ss_pred cccCcccHHHHHHHh-cc---cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~-l~---~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
++.-. ....+.. .. ..+.+++||||....+.- .. |.+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~l----~~----------------~~~l--------------- 409 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLAL----TV----------------YGDL--------------- 409 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHHH----Hh----------------cCCc---------------
Confidence 97432 2222322 22 467899999997532210 00 0000
Q ss_pred HHHHHHHhhHhhcCCCcEE--EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 515 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~--~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
...+...+|+... ....+.-..
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 0001112222110 011111000
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccH--------HHHHHHHHHHhh--CCCcEEEEeccCCHHH
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~--------~~ld~L~~~L~~--~g~~~~~i~G~~~~~~ 662 (864)
+ ..+...+.+....|++++|||... ..+..+.+.|.. .++++..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 111122222334578888888654 223344444443 4789999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC-CcchhhHHHHHHHHhCCCCcEE
Q 002937 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 663 R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
|.++++.|.++... +|++|.+.++|||++.+++||+++++. +...+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99999999875543 899999999999999999999999974 6788999999999988765443
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=1.1e-20 Score=227.91 Aligned_cols=308 Identities=17% Similarity=0.215 Sum_probs=202.4
Q ss_pred CCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcCC--
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~--~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p~-- 358 (864)
.++.|.|..++..+......+ .+.++..++|+|||..++..+......+ ..++|++|...+ .|....|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 468999999998886554443 5789999999999998765544333332 479999996555 7888889988755
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+++..++|...........+ .-...+.+|+|+|+..+.+.. .+ -+..++||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Cc--ccCCEEEeeccc
Confidence 45556666443222111100 001135789999997764322 22 245789999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
++.. .....++.+. ....++|||||++..+... +....++.
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~s--------------------------------- 625 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHMS--MSGIRDLS--------------------------------- 625 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHHH--HhcCCCcE---------------------------------
Confidence 9742 3344555554 4578999999964322110 00000000
Q ss_pred HHHHhhHhhcCCCcEEEEE---EecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 518 rr~k~dv~~~lp~~~~~~v---~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
+. ..||.....+ .++.+.
T Consensus 626 ------~I-~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 626 ------II-ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred ------EE-ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 00 1111111000 011000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--CCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
......++..+ ..|.+++||++.....+.+.+.|... ++++..++|.++..+|.+++++|.+
T Consensus 647 ---------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 00000111222 34789999999999999999999874 7899999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCC-CCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+... +|++|.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|.|+..
T Consensus 711 Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 6544 89999999999999999999999986 4566889999999998764 444555544
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=1.2e-20 Score=224.92 Aligned_cols=304 Identities=15% Similarity=0.212 Sum_probs=197.7
Q ss_pred CCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHHcCC--
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQ-- 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~--~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~~p~-- 358 (864)
.+|+++|..++.-+......+ .+.+|..+||+|||+.++..+...... ...+||++|... ..|..+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-GYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 479999999998886655433 478999999999999886655444433 237999999654 47899999998864
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+++..++|+..........+- ......+|+|+|+..+.... .+. +..+||+||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 788888887654322111100 01235789999998875421 222 45789999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
++.- .....+... ...+.++|||||++..+. +.. |.+..
T Consensus 394 rfg~---~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~~~----------------- 433 (681)
T PRK10917 394 RFGV---EQRLALREKGENPHVLVMTATPIPRTLA----MTA----------------YGDLD----------------- 433 (681)
T ss_pred hhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCCCc-----------------
Confidence 9842 233334333 246789999999632210 000 00000
Q ss_pred HHHHhhHhhcCCCcE--EEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccC
Q 002937 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (864)
Q Consensus 518 rr~k~dv~~~lp~~~--~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~ 595 (864)
-.+...+|+.. .....+.
T Consensus 434 ----~s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 434 ----VSVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred ----eEEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 00001122210 0000000
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHH--------HHHHHHHHHhhC--CCcEEEEeccCCHHHHHH
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~--------~ld~L~~~L~~~--g~~~~~i~G~~~~~~R~~ 665 (864)
..+...+.+.+......|++++|||..+. .+..+.+.|... ++++..++|+++..+|++
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00111122223333366889999987532 233445555433 578999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC-CcchhhHHHHHHHHhCCCCcE
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V 727 (864)
++++|.++... +|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....+
T Consensus 523 i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 523 VMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 99999875443 899999999999999999999999974 568899999999998875444
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.8e-20 Score=215.82 Aligned_cols=329 Identities=21% Similarity=0.335 Sum_probs=226.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhc--CCCCc-eEEEeccccH-HHHHHHHHHHcC-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG--ERISP-HLVVAPLSTL-RNWEREFATWAP- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~--~~~~~-~LIV~P~sll-~qW~~E~~~~~p- 357 (864)
..+.|.|..++-.+ ..|+..|....+|+|||.. .|.++..+.. ....+ .||++|...+ .|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 36889999998766 5779999999999999977 4566666542 22223 8999997555 677778877763
Q ss_pred --CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEE
Q 002937 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (864)
Q Consensus 358 --~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vI 433 (864)
.+++..++|.......+...+ ...||+|.|+..+.... ..+......++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~--------------------------~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALK--------------------------RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHh--------------------------cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 577888888766555443321 14899999999886432 234445677899
Q ss_pred ecccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 002937 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (864)
Q Consensus 434 vDEaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~ 510 (864)
+|||.++-+.+ ..+...+..++. ...++.|||--. .+.+ +
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~----------------------------------l-- 222 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRE----------------------------------L-- 222 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHH----------------------------------H--
Confidence 99999997753 355555666654 566899999521 1111 1
Q ss_pred HHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCC
Q 002937 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~ 590 (864)
...++ . .|. .+.+..... ... ..+ ..+.|+.
T Consensus 223 -~~~~l---------~--~p~---~i~v~~~~~-------------------~~~----------~~~-i~q~~~~---- 253 (513)
T COG0513 223 -ARRYL---------N--DPV---EIEVSVEKL-------------------ERT----------LKK-IKQFYLE---- 253 (513)
T ss_pred -HHHHc---------c--CCc---EEEEccccc-------------------ccc----------ccC-ceEEEEE----
Confidence 00000 0 000 111110000 000 000 0000000
Q ss_pred CCccCchHHHHHhhhc-ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 591 PDIEDTNESFKQLLES-SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 591 ~~~~~~~~~~~~l~~~-s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
+.. ..|+..|..++..... .++|||+.....++.|...|...|+++..|+|++++.+|.++++.
T Consensus 254 -------------v~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 254 -------------VESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred -------------eCCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 001 1477777777765433 379999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K 749 (864)
|+++... +|++|+++++|||++..++||+||.|.++..|++|+||.+|.|.+- ..+.|++. .-|...+..+.+.
T Consensus 319 F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 9865544 8999999999999999999999999999999999999999999543 44556665 3355566655555
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=4.8e-20 Score=227.09 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=198.9
Q ss_pred CCCchHHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcCC--
Q 002937 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~--~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p~-- 358 (864)
.++.+.|..++.-+...... ..+.+++.+||+|||.+++..+...... ...+||+||...+ .|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999876554333 3678999999999999876443333322 3489999997555 7788888876644
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+++.+++|...........+ .......+|+|+|++.+..+. .-.+.+++||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~----------------------~l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILA----------------------EAAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHH----------------------HHHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 45556665433322111110 001135789999998775432 22356799999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
++.. .....++.+. ....+++||||++..+.-. +..+.++..+
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~~I------------------------------- 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLSII------------------------------- 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcEEE-------------------------------
Confidence 9842 2334455554 4578999999964332110 0000000000
Q ss_pred HHHHhhHhhcCCCcEEE---EEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 518 RRVKKDVMKELPPKKEL---ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 518 rr~k~dv~~~lp~~~~~---~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
..|+.... .+......
T Consensus 777 ---------~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 777 ---------ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred ---------ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 01111000 00000000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--CCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
......++..+. .|.+++||++.+..++.+.+.|... +.++..++|.++..+|.+++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 000112233333 3678999999999999999999876 7899999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCC-CCcchhhHHHHHHHHhCCCCcE
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
+... +|++|.+.+.|||++.+++||+.+++ ++...+.|+.||++|.|.+..+
T Consensus 860 Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 860 QRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 6544 89999999999999999999998875 6778899999999998876433
No 53
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.8e-20 Score=183.30 Aligned_cols=314 Identities=18% Similarity=0.257 Sum_probs=221.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCC-CCceEEEeccccH-HHHHHHHHHHcC--CCe
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGER-ISPHLVVAPLSTL-RNWEREFATWAP--QMN 360 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~-~~~~LIV~P~sll-~qW~~E~~~~~p--~~~ 360 (864)
+..-|..|+.-+ .+|+++|.....|+|||.+ +++++..+.-.. ...+||+.|..-+ .|-..-+..... +..
T Consensus 50 PS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 50 PSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred chHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 344677777555 6899999999999999976 566666553322 2378999997655 566666666654 455
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEaH 438 (864)
+....|.....+.++..+ ...+++.-|+..+... ...|......++|+|||.
T Consensus 126 ~hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EEEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 566667666555554432 3567888898877542 445666678899999999
Q ss_pred cccC--cccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHH
Q 002937 439 RLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (864)
Q Consensus 439 ~lkn--~~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~ 515 (864)
.+.| ...+.+...+.++ ....+++|||- +.|+..+.++..++.
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdp------------------------------ 225 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDP------------------------------ 225 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCc------------------------------
Confidence 9855 4568888888887 56778999995 233332222222211
Q ss_pred HHHHHHhhHhhcCCCcEEEEEEecCCHH-HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 516 LLRRVKKDVMKELPPKKELILRVELSSK-QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~v~ls~~-q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
....+-+-+++-+ -+.+|-++-
T Consensus 226 ---------------vrilvkrdeltlEgIKqf~v~ve------------------------------------------ 248 (400)
T KOG0328|consen 226 ---------------VRILVKRDELTLEGIKQFFVAVE------------------------------------------ 248 (400)
T ss_pred ---------------eeEEEecCCCchhhhhhheeeec------------------------------------------
Confidence 1111111222221 111111100
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
...-|+..|..+-..+-- ...+|||+.....|+|.+.++..++.+..++|.++.++|.++++.|+.+.
T Consensus 249 ----------~EewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 249 ----------KEEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred ----------hhhhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 011255556666555432 37899999999999999999999999999999999999999999999887
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
+. +|++|++-+.||+.+.++.||+||.|-|+..|++|+||.+|.|.+- .+..|+....
T Consensus 317 Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 317 SR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred ce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 76 7999999999999999999999999999999999999999999754 3346776543
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=3.1e-19 Score=215.93 Aligned_cols=318 Identities=19% Similarity=0.169 Sum_probs=198.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcC-CCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAP-LSTLRNWEREFATWAP-QMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p-~~~~ 361 (864)
+|+|+|.+++.-+ +..+++++++.+||+|||+.+. +++..+. ..+++|+|+| .++..|+.++|.++.+ +.++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v 97 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVRV 97 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEE
Confidence 6999999998642 3578899999999999999984 4444443 2358999999 5777899999988753 6788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~ 439 (864)
..++|+..... ......+|+|+|++.+...... ..--..+++|+||+|.
T Consensus 98 ~~~tGd~~~~~-----------------------------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 98 GISTGDYDSRD-----------------------------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EEEeCCcCccc-----------------------------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 88888643221 0113468999999987442221 0012458999999999
Q ss_pred ccCcc--cHHHHHHHhc----ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 440 LKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 440 lkn~~--s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
+.+.. ...-..+..+ .....++||||. .|..++...+ +...+.. .+
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~wl---~~~~~~~------~~----------------- 200 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELADWL---DAELVDS------EW----------------- 200 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHHHh---CCCcccC------CC-----------------
Confidence 86532 2222222222 234679999997 2445544322 2111100 00
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
-|-.....+... .. . .+. .. +..
T Consensus 201 --------------rpv~l~~~v~~~-~~--~-~~~--------------~~----------------~~~--------- 223 (737)
T PRK02362 201 --------------RPIDLREGVFYG-GA--I-HFD--------------DS----------------QRE--------- 223 (737)
T ss_pred --------------CCCCCeeeEecC-Ce--e-ccc--------------cc----------------ccc---------
Confidence 000000000000 00 0 000 00 000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--------------------------
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-------------------------- 647 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-------------------------- 647 (864)
+....+.. ...++......++++|||++.......+...|...
T Consensus 224 ----------~~~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (737)
T PRK02362 224 ----------VEVPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDT 292 (737)
T ss_pred ----------CCCccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCc
Confidence 00000111 11222222346789999999988766665555321
Q ss_pred ----------CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eC-----CCCCc
Q 002937 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SDWNP 708 (864)
Q Consensus 648 ----------g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d-----~~wnp 708 (864)
...+..++|+++..+|..+.+.|.++. +.+|++|.+++.|||+++.++||. || .+.++
T Consensus 293 ~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~---i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 293 ETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL---IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred cccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC---CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 135778899999999999999997643 458999999999999999887776 77 46788
Q ss_pred chhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 709 HADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 709 ~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
..+.|++||++|.|....-.++-+...
T Consensus 370 ~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 370 LEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 899999999999998765555555543
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=206.79 Aligned_cols=312 Identities=22% Similarity=0.204 Sum_probs=210.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC-C----C-ceEEEeccccHH-HHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-I----S-PHLVVAPLSTLR-NWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~-~----~-~~LIV~P~sll~-qW~~E~~~~ 355 (864)
.+++|.|..++.-+ ..|.++++..+||+|||..| +.++..+...+ . + .+|.|.|...+. .-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 47899999998766 68999999999999999998 55566666652 1 1 579999966554 455556655
Q ss_pred c--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc------ccccCCc
Q 002937 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (864)
Q Consensus 356 ~--p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~------~~~l~~~ 427 (864)
. -++.+-+-+|+...... .+.....+||+|||++++.-. ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--------------------------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--------------------------QKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHh--------------------------hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 4 25666666665544321 112345789999999998432 3344444
Q ss_pred ceeEEEecccccccCc--ccHHHHHHHhcc----cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccch
Q 002937 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~--~s~~~~~l~~l~----~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~ 501 (864)
.+|||||.|.+.+. +++++-.+..+. .-.|++||||- .++.++. .||.+...
T Consensus 151 --r~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~va---rfL~g~~~--------------- 208 (814)
T COG1201 151 --RYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEEVA---KFLVGFGD--------------- 208 (814)
T ss_pred --cEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHHHH---HHhcCCCC---------------
Confidence 46999999999864 456665555553 24689999994 2333332 23322210
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhC
Q 002937 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (864)
Q Consensus 502 ~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~ 581 (864)
.-+-+......+....|.++-... ...
T Consensus 209 ------------------~~~Iv~~~~~k~~~i~v~~p~~~~--~~~--------------------------------- 235 (814)
T COG1201 209 ------------------PCEIVDVSAAKKLEIKVISPVEDL--IYD--------------------------------- 235 (814)
T ss_pred ------------------ceEEEEcccCCcceEEEEecCCcc--ccc---------------------------------
Confidence 000000011111111111110000 000
Q ss_pred cccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCC-CcEEEEeccCCH
Q 002937 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (864)
Q Consensus 582 hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~ 660 (864)
..-...+.+.+..+.++.+.+|||++...+.+.+...|...+ .++..-+||.+.
T Consensus 236 -------------------------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 236 -------------------------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred -------------------------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 001112233444455556689999999999999999998876 889999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHH-HHhCCCCcEE
Q 002937 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVM 728 (864)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~-~RiGQ~~~V~ 728 (864)
++|..+-++|.++.- ..++||.++..|||.-.+|.||.|.+|-.-...+||+||+ ||+|....-.
T Consensus 291 e~R~~vE~~lk~G~l---ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ 356 (814)
T COG1201 291 ELRLEVEERLKEGEL---KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGI 356 (814)
T ss_pred HHHHHHHHHHhcCCc---eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEE
Confidence 999999999987653 4799999999999999999999999999999999999999 7777654443
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=1.4e-18 Score=193.87 Aligned_cols=328 Identities=14% Similarity=0.208 Sum_probs=194.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEEec-cccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCC
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~-~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~ 384 (864)
.++..+||+|||.+++..+..... ...+++++|+| .+++.|+.+.+..++.. ++..++|...... .... ..
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~-----~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM-----GD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc-----CC
Confidence 578899999999998777665543 33458999999 57778999999887643 5556666543211 0000 00
Q ss_pred chhhhcccCCccccccccccCCCcEEEccHHHHHhcccc-c-------CCcceeEEEecccccccCccc-HHHHHHHhcc
Q 002937 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (864)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~-l-------~~~~w~~vIvDEaH~lkn~~s-~~~~~l~~l~ 455 (864)
.....+.. .............+++++|++.+...... + ..+...++|+||+|.+..... .+...+..+.
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 75 SEEFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred chhHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 00000000 00000011123567999999987543222 1 112336899999999875322 2223333332
Q ss_pred --cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEE
Q 002937 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (864)
Q Consensus 456 --~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~ 533 (864)
....+++|||+- ..+.++..- .. ..+
T Consensus 153 ~~~~~~i~~SATlp-~~l~~~~~~---~~---------------------------------------------~~~--- 180 (358)
T TIGR01587 153 DNDVPILLMSATLP-KFLKEYAEK---IG---------------------------------------------YVE--- 180 (358)
T ss_pred HcCCCEEEEecCch-HHHHHHHhc---CC---------------------------------------------Ccc---
Confidence 345699999962 011110000 00 000
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHH
Q 002937 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (864)
Q Consensus 534 ~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l 613 (864)
........+. +....|++..... ....|...+
T Consensus 181 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 181 FNEPLDLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred cccCCCCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 0000000000 0000111100000 012344455
Q ss_pred HHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCC--cEEEEeccCCHHHHHHH----HHHhcCCCCCceEEEeecccc
Q 002937 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (864)
Q Consensus 614 ~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~--~~~~i~G~~~~~~R~~~----i~~Fn~~~~~~~v~Llst~a~ 687 (864)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.+. ++.|.++. ..+|++|.++
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~---~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE---KFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC---CeEEEECcch
Confidence 5555443 3578999999999999999999987766 48999999999999764 78887633 3479999999
Q ss_pred ccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC----cEEEEEEEeCC---CHHHHHHHHHHHhh
Q 002937 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (864)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~----~V~Vy~lv~~~---TiEe~i~~~~~~K~ 750 (864)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++..+++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999995 8999988765 889999999999999763 45555544444 45566666555443
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=2.5e-18 Score=207.52 Aligned_cols=317 Identities=19% Similarity=0.177 Sum_probs=195.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC-CCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p-~~~ 360 (864)
.+|+|+|.+++.-. +..+++++++.+||+|||+.+ ++++..+... .+++|+|+|. ++..|+.+++..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-GGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36899999998631 267899999999999999998 5555555433 4589999995 666888888887642 567
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc----ccCCcceeEEEecc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~----~l~~~~w~~vIvDE 436 (864)
+..++|....... .....+|+|+|++.+..... .+ -..++||+||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcC
Confidence 7778776432110 01346899999998754321 22 2457999999
Q ss_pred cccccC--cccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn--~~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
+|.+.. ....+...+..+. ....++||||.- |..++...+ ....+.. .+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~wl---~~~~~~~------~~----------------- 198 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAEWL---NAELVVS------DW----------------- 198 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHHHh---CCccccC------CC-----------------
Confidence 999864 3344444455543 346799999972 355544322 2111100 00
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
...|-... +..... ..+. .+.. .+
T Consensus 199 ------------rpv~l~~~--~~~~~~----~~~~-------------~~~~----------~~--------------- 222 (720)
T PRK00254 199 ------------RPVKLRKG--VFYQGF----LFWE-------------DGKI----------ER--------------- 222 (720)
T ss_pred ------------CCCcceee--EecCCe----eecc-------------Ccch----------hc---------------
Confidence 00010000 000000 0000 0000 00
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh---------------------------
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~--------------------------- 646 (864)
. ...+..++......+.++|||++.......+...|..
T Consensus 223 ------------~---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 223 ------------F---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred ------------c---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 0 0001122233334578999999887665444333311
Q ss_pred ------CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE-------eCCCC-Ccchhh
Q 002937 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDW-NPHADL 712 (864)
Q Consensus 647 ------~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~-------~d~~w-np~~~~ 712 (864)
.+..+..++|+++.++|..+.+.|+++. +.+|++|.+++.|+|+++.+.||. ++.+. ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~---i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGL---IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCC---CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 1235788999999999999999998643 348999999999999998887774 22222 335789
Q ss_pred HHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 713 Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
|++||++|.|..+.-.++-++....
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776656666665443
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.82 E-value=4.7e-19 Score=212.90 Aligned_cols=306 Identities=19% Similarity=0.198 Sum_probs=190.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC-CCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p-~~~~ 361 (864)
.+|+|+|.++++.+ ..+++++++.+||+|||+++...+...... .+++++|+|. ++..|+.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 678899999999999999876555443332 2588999995 666888888887642 4566
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~ 439 (864)
....|....... .....+|+|+|++.+...... ..--++++||+||+|.
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 666665432110 012468999999876432111 1112467999999999
Q ss_pred ccCcc--cHHHHHHH---hcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 440 LKNKD--SKLFSSLK---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 440 lkn~~--s~~~~~l~---~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
+.... ......+. .+. ....++||||+- |..++.. +++...+..
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la~---wl~~~~~~~------------------------- 196 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELAQ---WLNASLIKS------------------------- 196 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHHH---HhCCCccCC-------------------------
Confidence 86432 22222222 222 345699999972 3444332 222211100
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
. ....| ....++... ..+ .+...
T Consensus 197 ---------~-~r~vp-l~~~i~~~~------~~~-------------------------------------~~~~~--- 219 (674)
T PRK01172 197 ---------N-FRPVP-LKLGILYRK------RLI-------------------------------------LDGYE--- 219 (674)
T ss_pred ---------C-CCCCC-eEEEEEecC------eee-------------------------------------ecccc---
Confidence 0 00011 111111000 000 00000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-------------------------C
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-------------------------K 648 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-------------------------g 648 (864)
..+. .+..++......++++|||++.....+.+...|... .
T Consensus 220 -------------~~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 285 (674)
T PRK01172 220 -------------RSQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLP 285 (674)
T ss_pred -------------cccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHh
Confidence 0000 022344444556889999999988777776666432 1
Q ss_pred CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCC---------CCCcchhhHHHHHHH
Q 002937 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMARAH 719 (864)
Q Consensus 649 ~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~---------~wnp~~~~Qa~gR~~ 719 (864)
..+..++|+++.++|..+.+.|.++. +.+|++|.+++.|+|+++ .+||++|. ++++..+.|++||++
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~g~---i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAG 361 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRY---IKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAG 361 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHcCC---CeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCC
Confidence 23667899999999999999997643 348999999999999996 57887764 356778899999999
Q ss_pred HhCCCCcEE
Q 002937 720 RLGQTNKVM 728 (864)
Q Consensus 720 RiGQ~~~V~ 728 (864)
|.|....-.
T Consensus 362 R~g~d~~g~ 370 (674)
T PRK01172 362 RPGYDQYGI 370 (674)
T ss_pred CCCCCCcce
Confidence 999765533
No 59
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=2.9e-18 Score=203.52 Aligned_cols=361 Identities=15% Similarity=0.135 Sum_probs=200.3
Q ss_pred CCCchHHHHHHHHHHHhhcC------CCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-cccHHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~------~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P-~sll~qW~~E~~~~ 355 (864)
.-.|+||..||+.+.....+ .++|++.+.+|+|||++++.++..+.... ..++||||| ..|..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988766544 46899999999999999999988876543 348999999 57779999999998
Q ss_pred cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc-cccCCc----cee
Q 002937 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI----KWQ 430 (864)
Q Consensus 356 ~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~-~~l~~~----~w~ 430 (864)
.+.... -.++ ...+... .......|+|+|.+++.... ..+... ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753111 0111 1111110 01123579999999997521 111111 123
Q ss_pred EEEecccccccCcccHHHHHH-HhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 431 CMIVDEGHRLKNKDSKLFSSL-KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 431 ~vIvDEaH~lkn~~s~~~~~l-~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
+||+|||||... ......+ ..++...+++|||||....-.+-+..+... ++. .
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~----fg~----------~---------- 421 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYV----FGR----------Y---------- 421 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCcccccccccccccCC----CCC----------e----------
Confidence 899999998643 2334445 356678999999999754211111111000 110 0
Q ss_pred HHHhHHHHHHHHhhHhhc-CCCcEEEEEEec--CCHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhCccc
Q 002937 510 RMLAPHLLRRVKKDVMKE-LPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPY 584 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~-lp~~~~~~v~v~--ls~~q~~~Y~~i~~~~~~~l~~~~~~--~~~~~~~~~~lrk~~~hp~ 584 (864)
+..+-+ ++.+... +.|..+..+.++ ++.. ..+....+........... ...+......+..
T Consensus 422 --i~~Y~~---~~AI~dG~~~~i~Y~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 487 (667)
T TIGR00348 422 --LHRYFI---TDAIRDGLTVKIDYEDRLPEDHLDRK---KLDAFFDEIFELLPERIREITKESLKEKLQKTKK------ 487 (667)
T ss_pred --EEEeeH---HHHhhcCCeeeEEEEecchhhccChH---HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh------
Confidence 000000 1111111 222222222221 1111 1111111111100000000 0001111111111
Q ss_pred ccCCCCCCccCchHHHHHhhhcccHHHHHHHHH-HHH----HHcCceEEEEeccHHHHHHHHHHHhhC-----CCcEEEE
Q 002937 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMM-VKL----KEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERI 654 (864)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll-~~l----~~~g~kvlIFsq~~~~ld~L~~~L~~~-----g~~~~~i 654 (864)
++.+...+..+.+.+ +.+ ...+.|.+|||.+...+..+.+.|... +...+.+
T Consensus 488 ------------------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~ 549 (667)
T TIGR00348 488 ------------------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVM 549 (667)
T ss_pred ------------------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEe
Confidence 111111222222222 111 223579999999999887777776432 3455667
Q ss_pred eccCCHH---------------------HHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhH
Q 002937 655 DGKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQ 713 (864)
Q Consensus 655 ~G~~~~~---------------------~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Q 713 (864)
+|+.+.. ....++++|.+++ .+.+|++++...+|+|.+.++++++.-|--+ +.++|
T Consensus 550 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~--~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQ 626 (667)
T TIGR00348 550 TGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE--NPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQ 626 (667)
T ss_pred cCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC--CceEEEEEcccccccCCCccceEEEeccccc-cHHHH
Confidence 7664432 2347899997643 3347888899999999999999999988765 46899
Q ss_pred HHHHHHHh-CC-CCcEEEEEEEe
Q 002937 714 AMARAHRL-GQ-TNKVMIFRLIT 734 (864)
Q Consensus 714 a~gR~~Ri-GQ-~~~V~Vy~lv~ 734 (864)
++||+.|+ +. +....|+.++.
T Consensus 627 ai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 627 AIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHhccccCCCCCCEEEEECcC
Confidence 99999995 43 34567777764
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.81 E-value=4e-18 Score=197.97 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+.+..+...|.++||||......+.|...|...|+++..++|.....+|..+...|+. + .++++|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4568999999998888889999999999999999999999999999999999888777666555533 3 3799999
Q ss_pred ccccCcCCC---------CCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~---------~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|++ +.++||.++++-+.. +.|+.||++|.|..-..
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri-d~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRV-DLQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcHH-HHHhhhcccCCCCceeE
Confidence 999999999 889999999986654 49999999999876543
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.80 E-value=6.7e-18 Score=198.12 Aligned_cols=106 Identities=23% Similarity=0.405 Sum_probs=87.9
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHH-----HHHHHhcC----CC----CCceEEEeeccccc
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAGG 688 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~-----~~i~~Fn~----~~----~~~~v~Llst~a~~ 688 (864)
..+.++|||++.+..++.|.+.|...++ ..++|.+++.+|. +++++|.. +. .....+||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4578999999999999999999998887 8999999999999 78899976 21 11135799999999
Q ss_pred cCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCc--EEEEEE
Q 002937 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (864)
Q Consensus 689 ~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~--V~Vy~l 732 (864)
.|||+.. ++||++..+ +..++||+||++|.|.... +.++.+
T Consensus 348 rGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999986 999997776 4789999999999998643 444433
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=185.22 Aligned_cols=371 Identities=18% Similarity=0.252 Sum_probs=217.2
Q ss_pred CCchHHHHHHHHHHHhhc-----CCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC--ceEEEeccc-cHHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPLS-TLRNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~-----~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~~--~~LIV~P~s-ll~qW~~E~~~~ 355 (864)
.+.|-|...+-|+..-.. ..+...++..+|+|||+. +|-++..|...... +.|||+|.. +..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 688999999999865443 355678999999999988 56666666555433 889999965 457899999999
Q ss_pred cCC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCc---cee
Q 002937 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (864)
Q Consensus 356 ~p~--~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~---~w~ 430 (864)
.++ +.|....|...-+...++.. ........||+|+|+..+......-+.+ +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~---------------------~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLA---------------------SDPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHh---------------------cCCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 976 44555566555444333321 0111125699999999997665533332 457
Q ss_pred EEEecccccccCcccH--HHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 431 CMIVDEGHRLKNKDSK--LFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 431 ~vIvDEaH~lkn~~s~--~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
++|||||.|+.+...+ +...+..++...++.+. ..++.+..-..|-.++... ..+... ...|
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~~---t~~~~~-----~~~l 361 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSELL---TKLGKL-----YPPL 361 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHHH---hhcCCc-----Cchh
Confidence 8999999999764322 22233333222222111 1111111111111110000 000000 0000
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
..++.+-.+-+. |. .+..|+ ..||-++-.
T Consensus 362 ~kL~~satLsqd--------P~-----------------------------------------Kl~~l~--l~~Prl~~v 390 (620)
T KOG0350|consen 362 WKLVFSATLSQD--------PS-----------------------------------------KLKDLT--LHIPRLFHV 390 (620)
T ss_pred HhhhcchhhhcC--------hH-----------------------------------------HHhhhh--cCCCceEEe
Confidence 011111111000 00 000111 123322211
Q ss_pred CCCCc---cCchHHHHHhhhccc--HHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh----hCCCcEEEEeccCC
Q 002937 589 VEPDI---EDTNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (864)
Q Consensus 589 ~~~~~---~~~~~~~~~l~~~s~--Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~ 659 (864)
..+.. .-+.......+-.+. |-..+..++.. ....++|+|++.......|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 11000 000001111111222 33344455544 457799999999888777776665 44667778999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 660 ~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
.+.|.+.+.+|+.++.. +|++++++++|||+...+.||.||+|-.-..|++|.||..|-||.- ..|.++... |
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~ 541 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--E 541 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--c
Confidence 99999999999876554 8999999999999999999999999999999999999999999965 345566543 4
Q ss_pred HHHHHHHHHhhhH
Q 002937 740 ERMMQMTKKKMVL 752 (864)
Q Consensus 740 e~i~~~~~~K~~l 752 (864)
++.+-..-+|..+
T Consensus 542 ~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 542 KRLFSKLLKKTNL 554 (620)
T ss_pred chHHHHHHHHhcc
Confidence 4555555444433
No 63
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=176.90 Aligned_cols=311 Identities=17% Similarity=0.290 Sum_probs=213.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cC-C---CC--ceEEEeccccHHHH----HHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTLRNW----EREF 352 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~-~~-~---~~--~~LIV~P~sll~qW----~~E~ 352 (864)
..+.|-|..++-.+ .++..+.+-..||+|||+.-+.-+.... +. . ++ -.|||+|..-+.-. ...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998777 7889999999999999987644444333 22 1 22 45999997665433 3345
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc----ccccCCcc
Q 002937 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (864)
Q Consensus 353 ~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----~~~l~~~~ 428 (864)
....|+++...+.|+....+.+..+. ....+|+|.|+..+... ...+.-..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 55568999999999977776655441 23567999999887543 22344335
Q ss_pred eeEEEecccccccCc--ccHHHHHHHhcccccEE-EeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHH
Q 002937 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (864)
Q Consensus 429 w~~vIvDEaH~lkn~--~s~~~~~l~~l~~~~rl-lLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 505 (864)
-.++|+|||.++-.. .......+..++..+|- |.|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 678999999999654 45666777777777664 4578741 011
Q ss_pred HHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEec-C--CHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCc
Q 002937 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (864)
Q Consensus 506 ~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~-l--s~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~h 582 (864)
+.|.. . .|-......|... + +|...+.
T Consensus 203 ~dL~r----a-----------GLRNpv~V~V~~k~~~~tPS~L~~----------------------------------- 232 (567)
T KOG0345|consen 203 EDLAR----A-----------GLRNPVRVSVKEKSKSATPSSLAL----------------------------------- 232 (567)
T ss_pred HHHHH----h-----------hccCceeeeecccccccCchhhcc-----------------------------------
Confidence 11100 0 1111111111000 0 0000000
Q ss_pred ccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh--CCCcEEEEeccCCH
Q 002937 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (864)
Q Consensus 583 p~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~--~g~~~~~i~G~~~~ 660 (864)
....+.+.-|+..|.++|.. ...+|+|||...-...++....|.. .+.+...++|.++.
T Consensus 233 -----------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 -----------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred -----------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00112345577778888876 3467999998877777777666653 47889999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
..|..++..|.+..++ +|++|++++.|||+++.|.||.||||-+|..+.+|.||..|.|..-...|+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 9999999999884444 799999999999999999999999999999999999999999987655544
No 64
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.2e-17 Score=188.06 Aligned_cols=304 Identities=19% Similarity=0.209 Sum_probs=210.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~ 362 (864)
...||-|.++++.+ ..++++|....||.||++.. -+-.+.. .|.+|||.| .+++....+.+.... +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCy--QiPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCY--QIPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHh--hhHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 36889999999877 67799999999999999753 1222222 469999999 588888888887653 4444
Q ss_pred EEecC--hHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEecccc
Q 002937 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 363 ~~~g~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEaH 438 (864)
...++ ...+..+... -.....+++..++|.+... .+.+...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 44443 2222222111 1123568999999999664 445667788999999999
Q ss_pred cccCc-------ccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 002937 439 RLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (864)
Q Consensus 439 ~lkn~-------~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~ 511 (864)
.+-.. ...+......+....++.||||--+---.|+...|..-.+..|..
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~----------------------- 198 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG----------------------- 198 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe-----------------------
Confidence 87543 345555566666668899999864444444444444333222110
Q ss_pred HhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCC
Q 002937 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (864)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~ 591 (864)
.+.-. |+....+.
T Consensus 199 -------------------------sfdRp-----------------------------Ni~~~v~~------------- 211 (590)
T COG0514 199 -------------------------SFDRP-----------------------------NLALKVVE------------- 211 (590)
T ss_pred -------------------------cCCCc-----------------------------hhhhhhhh-------------
Confidence 00000 00000000
Q ss_pred CccCchHHHHHhhhcccHHHHHHHHHH-HHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHh
Q 002937 592 DIEDTNESFKQLLESSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~-~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 670 (864)
..+++.+.. .+. .....+...||||......+.+...|...|++...++|+++.++|+..-++|
T Consensus 212 -------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 212 -------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred -------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 001111111 111 1223345689999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 671 n~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
+.++.. ++++|.|.|.|||=++...||+||.|-+...|.|-+|||+|-|....+.+
T Consensus 277 ~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 277 LNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred hcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 976554 89999999999999999999999999999999999999999998766544
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=5e-18 Score=195.89 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
..|+..+.+.+......|..|||||.+....+.|...|...|+++..++|. ..+|+..|..|..... .++++|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEecc
Confidence 458888888888888899999999999999999999999999999999998 6789999999955333 47999999
Q ss_pred cccCcCCCC-------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 687 GGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 687 ~~~GinL~~-------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
+|.|+|+.. .-+||.++.+-|+..+.|+.||++|.|..-...
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 999999987 669999999999999999999999999875544
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=7.7e-17 Score=189.28 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=102.5
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..|.+.+......+.++||||......+.|...|...|+++..++|.+...++..+...++. + .++++|+
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4568888999888877789999999999999999999999999999999999887777766666543 2 3799999
Q ss_pred ccccCcCC---CCCC-----EEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL---~~a~-----~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|+ +.+. +||.+|.|-|+..+.|+.||++|.|..-..
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 99999999 5777 999999999999999999999999987544
No 67
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=178.24 Aligned_cols=306 Identities=19% Similarity=0.284 Sum_probs=205.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC----C-CceEEEeccccH-HHHHHHH---HH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER----I-SPHLVVAPLSTL-RNWEREF---AT 354 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~----~-~~~LIV~P~sll-~qW~~E~---~~ 354 (864)
+|.+-|...+.-+ ..|+.++.+.-+|+|||+..+.-+ ..++... . -.+|||||..-+ .|-..|. .+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 6778888776544 678899999999999998754333 3333221 1 267999997655 4555554 44
Q ss_pred HcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCC---cceeE
Q 002937 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQC 431 (864)
Q Consensus 355 ~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~---~~w~~ 431 (864)
+.+...+.+..|...-+...... . ...+++|.|+..+......-.. ..-++
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 55677777777766544322221 1 2678999999998653322211 12268
Q ss_pred EEecccccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 432 MIVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 432 vIvDEaH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
+|+|||.|+...+ -.+-+.+..+. ....+|.|||-- ..+..|
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~-----------------------------------~kV~~l 278 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQP-----------------------------------SKVKDL 278 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCc-----------------------------------HHHHHH
Confidence 9999999986433 33444444454 334588888830 111111
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
... .+.+ + ...|.|.
T Consensus 279 ~~~----~L~~---d---------~~~v~~~------------------------------------------------- 293 (543)
T KOG0342|consen 279 ARG----ALKR---D---------PVFVNVD------------------------------------------------- 293 (543)
T ss_pred HHH----hhcC---C---------ceEeecC-------------------------------------------------
Confidence 100 0100 0 0001110
Q ss_pred CCCCccCchHHHHH---hhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHH
Q 002937 589 VEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 589 ~~~~~~~~~~~~~~---l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~ 665 (864)
.+......+.+.+ +.....++.++..+|++.... .|++||+....+.+.+.+.|+...+++..|+|..++..|..
T Consensus 294 -d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 294 -DGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred -CCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 0000000001111 112344567777888776543 89999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
...+|.+.+++ +|++|++++.|+|.+.++.||-||+|-+|.+|++|+||..|-|-+-
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc
Confidence 99999988877 8999999999999999999999999999999999999999977553
No 68
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.77 E-value=7.5e-17 Score=173.46 Aligned_cols=325 Identities=16% Similarity=0.246 Sum_probs=227.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCC-----ceEEEeccccH-HHHHHHHHHHc-
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPLSTL-RNWEREFATWA- 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~-----~~LIV~P~sll-~qW~~E~~~~~- 356 (864)
.+..-|...+-.. -.|..+|-|.-+|+|||+.- +-++..|++..++ ..|||.|..-+ .|--..+.+.+
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4677888887544 57888999999999999874 5667777766543 57999997555 55555555543
Q ss_pred -CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc---cccCCcceeEE
Q 002937 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCM 432 (864)
Q Consensus 357 -p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~---~~l~~~~w~~v 432 (864)
-.+..-.+.|..+...... .....+|+|+|+..+.... ..+..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566667777766433211 1246789999999997643 34555577899
Q ss_pred EecccccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+|||.|+-..+ ..+...+..++ .+..||.|||+- +++.+|.-|
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-------------------------------- 266 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-------------------------------- 266 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh--------------------------------
Confidence 999999986543 34455566665 456699999983 333333221
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEE---ecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~---v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
.|....+..+. +.-+|. .|+| -|
T Consensus 267 -----------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q----~y-- 292 (758)
T KOG0343|consen 267 -----------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQ----SY-- 292 (758)
T ss_pred -----------------hcCCCcEEEEeccccccChh-------------------------------hhhh----eE--
Confidence 11111111111 011111 0111 00
Q ss_pred CCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh--CCCcEEEEeccCCHHHHH
Q 002937 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (864)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~--~g~~~~~i~G~~~~~~R~ 664 (864)
-++....|+..|...|.... ..|.|||...-..+..+.+.+.. .|++...++|.+++..|-
T Consensus 293 ---------------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 293 ---------------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ---------------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 01223457777888877655 45899999999999998888865 499999999999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHH
Q 002937 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 665 ~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~ 744 (864)
.+.++|..... ++|.+|+.++.||+++++|.||-+|.|-+...|++|.||..|.+..-+..+|- .-+-||.|+.
T Consensus 356 ev~~~F~~~~~---~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRKRA---VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHhcc---eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHH
Confidence 99999976433 58999999999999999999999999999999999999999998776665432 3345688888
Q ss_pred HHHHhh
Q 002937 745 MTKKKM 750 (864)
Q Consensus 745 ~~~~K~ 750 (864)
.+++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 877774
No 69
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=8.8e-18 Score=190.44 Aligned_cols=354 Identities=16% Similarity=0.192 Sum_probs=218.0
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-cccHHHHHHHHHHHcCC
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P-~sll~qW~~E~~~~~p~ 358 (864)
....+|+||..|++.+...+.+|+ +++|++.+|+|||.+|++++..|++.+ .+++|+++- ++++.|-..+|..+.|+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 346799999999999988888765 689999999999999999999998765 569999999 67888988899999998
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc-------ccCCcceeE
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQC 431 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~-------~l~~~~w~~ 431 (864)
.....+..... ....+.|.++||+++..... .+..-.||+
T Consensus 242 ~~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 242 GTKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred ccceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeE
Confidence 76655432221 11257899999999965322 234446999
Q ss_pred EEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 002937 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (864)
Q Consensus 432 vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~ 511 (864)
||||||||-- .+.++.+..+-...+++|||||-..--..-|.+++ ....+
T Consensus 289 IvIDEaHRgi---~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~--g~Pt~------------------------- 338 (875)
T COG4096 289 IVIDEAHRGI---YSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN--GEPTY------------------------- 338 (875)
T ss_pred EEechhhhhH---HhhhHHHHHHHHHHHHhhccCcccccccccccccC--CCcce-------------------------
Confidence 9999999832 23334555555667788899995422222222222 00000
Q ss_pred HhHHHHHHHHhhHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCC
Q 002937 512 LAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 512 l~~~~lrr~k~dv~~-~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~ 590 (864)
..-.++.|.. .|-|.....+.....- +--.|....++. .+ |--.+..
T Consensus 339 -----~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~sere--k~----------------------~g~~i~~-- 386 (875)
T COG4096 339 -----AYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSERE--KL----------------------QGEAIDE-- 386 (875)
T ss_pred -----eecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchhh--hh----------------------hccccCc--
Confidence 0001111221 1222222222222110 000011100000 00 0000000
Q ss_pred CCccCchHHHHHhhhcccHHHHHHHHHHHHHHc---C---ceEEEEeccHHHHHHHHHHHhhC-----CCcEEEEeccCC
Q 002937 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVG 659 (864)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~---g---~kvlIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~ 659 (864)
++.......+...+.....-..+.+.+...... | .|.||||....+++.|...|... |-=+..|+|..
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~- 465 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA- 465 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc-
Confidence 000000000001111122233444444444433 3 49999999999999999998653 22355678775
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhC-------CCC-cEEEEE
Q 002937 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIFR 731 (864)
Q Consensus 660 ~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiG-------Q~~-~V~Vy~ 731 (864)
++=+..|+.|... ...-.+.+|...+.+|||.+.+-.++|+-.--+-..+.|.+||+-|+. |.| ...|+.
T Consensus 466 -~~~q~~Id~f~~k-e~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD 543 (875)
T COG4096 466 -EQAQALIDNFIDK-EKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD 543 (875)
T ss_pred -hhhHHHHHHHHhc-CCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEE
Confidence 4456678888762 222347999999999999999999999999999999999999999964 333 356666
Q ss_pred EE
Q 002937 732 LI 733 (864)
Q Consensus 732 lv 733 (864)
++
T Consensus 544 f~ 545 (875)
T COG4096 544 FV 545 (875)
T ss_pred hh
Confidence 65
No 70
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.1e-17 Score=181.71 Aligned_cols=311 Identities=19% Similarity=0.260 Sum_probs=209.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCC-----------CceEEEecc-ccHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~-----------~~~LIV~P~-sll~qW~~ 350 (864)
..+.|+|+.++.-+ ..|++.+.+.++|+|||..- +-++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35778999988655 78899999999999999875 455566655421 257999996 56688889
Q ss_pred HHHHHc--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCC
Q 002937 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKP 426 (864)
Q Consensus 351 E~~~~~--p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~ 426 (864)
|..++. ..++.++.+|..+.+...+.. ...+|++++|...+....+ .+..
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~--------------------------~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI--------------------------KRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh--------------------------ccCccEEEecCchhhhhhhcceeeh
Confidence 998886 345666666665554433321 2478999999998864322 2222
Q ss_pred cceeEEEecccccccC---cccHHHHHHHhcc-----cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhc
Q 002937 427 IKWQCMIVDEGHRLKN---KDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (864)
Q Consensus 427 ~~w~~vIvDEaH~lkn---~~s~~~~~l~~l~-----~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~ 498 (864)
-...++|+|||.++-. ....+.+.+.... ....++.|||-- .+
T Consensus 225 ~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----~~------------------------- 275 (482)
T KOG0335|consen 225 DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----KE------------------------- 275 (482)
T ss_pred hhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC----hh-------------------------
Confidence 2334899999999854 2334444444432 334577777730 00
Q ss_pred cchHHHHHHHHHHHhHHHHH-HHH---hhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 002937 499 INQEEQISRLHRMLAPHLLR-RVK---KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVM 574 (864)
Q Consensus 499 ~~~~~~~~~L~~~l~~~~lr-r~k---~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~ 574 (864)
+ +.+...++.- .+. .-+...-......+++|.
T Consensus 276 ------i---q~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------- 311 (482)
T KOG0335|consen 276 ------I---QRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------- 311 (482)
T ss_pred ------h---hhhHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------
Confidence 0 0000000000 000 000000111111122221
Q ss_pred HHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHH---Hc----CceEEEEeccHHHHHHHHHHHhhC
Q 002937 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLTFK 647 (864)
Q Consensus 575 ~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~---~~----g~kvlIFsq~~~~ld~L~~~L~~~ 647 (864)
...|...|.++|.... .. -++++||+.-+.+++.|..+|...
T Consensus 312 -------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 312 -------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred -------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 2233333444443322 11 248999999999999999999999
Q ss_pred CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 648 g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
|+++.-|+|..++.+|.++++.|...... +|++|..++.|||.+.+.+||+||.|-+-..|++|+||.+|.|+.-..
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~a 437 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRA 437 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCcee
Confidence 99999999999999999999999876555 799999999999999999999999999999999999999999998666
Q ss_pred EEEE
Q 002937 728 MIFR 731 (864)
Q Consensus 728 ~Vy~ 731 (864)
+.+.
T Consensus 438 tsf~ 441 (482)
T KOG0335|consen 438 TSFF 441 (482)
T ss_pred EEEe
Confidence 5543
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.1e-16 Score=181.83 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|...|.+++..+...+..+|||++.....+.|...|...|+++..++|... +|+..+..|..... .++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g---~VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG---RITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC---cEEEEcc
Confidence 456889999999888777889999999999999999999999999999999854 56666666653333 2799999
Q ss_pred ccccCcCCC---CCC-----EEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHH
Q 002937 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (864)
Q Consensus 686 a~~~GinL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~ 745 (864)
.+|.|+|+. .+. +||.+|.|-|+..+.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 999999998 444 9999999999999999999999999764332 333 345566544
No 72
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.76 E-value=2.8e-17 Score=175.98 Aligned_cols=338 Identities=17% Similarity=0.237 Sum_probs=214.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhc---------CCCC-ceEEEeccccH-HHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG---------ERIS-PHLVVAPLSTL-RNWEREF 352 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~---------~~~~-~~LIV~P~sll-~qW~~E~ 352 (864)
...|-|..++--+ .++++.|...|+|+|||..- |-++..+-. ...| ..+|++|+--+ .|-+.|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 5678898887644 67889999999999999432 222222211 1223 46899997555 5677777
Q ss_pred HHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcc
Q 002937 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIK 428 (864)
Q Consensus 353 ~~~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~ 428 (864)
.+|+- ++.++...|...-... +.+-...++|+|.|+..+..-. ..|..-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq--------------------------~fqls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ--------------------------GFQLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh--------------------------hhhhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 4667777765432211 0011246889999998875422 2233335
Q ss_pred eeEEEecccccccCcc--cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHH
Q 002937 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~--s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~ 506 (864)
..++|+|||.++-..+ -...+.|..+ |..|. .| +.++ .+...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde----------~~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDE----------KEGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccc----------hhhHH
Confidence 6789999999875432 2333333332 21111 00 0000 01111
Q ss_pred HHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccccc
Q 002937 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (864)
Q Consensus 507 ~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~ 586 (864)
.+...+.. .+ --.......+.|+|.-..+-+..+ ..|...
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~yl----------------------------r~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYL----------------------------RRPVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHh----------------------------hCCeEE
Confidence 11111100 00 001223445666665443333222 222221
Q ss_pred C-CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHH
Q 002937 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 587 ~-~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~ 665 (864)
. +........-+..-.++..+.|...|.++|... ....+|||.+....+|.|++.|++.||++.+++|+.++++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111110011112344677888888888775 4679999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+++.|..+..+ +|++|+++|.||+++.+++||.||..-+...|.+||||.+|-|+.-.+. -|++.
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~ 623 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTP 623 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEecc
Confidence 99999887666 7999999999999999999999999999999999999999999876544 35554
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=1.2e-16 Score=198.25 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=84.1
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCC---------------------------------CcEEEEeccCCHHHHHHHHHH
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g---------------------------------~~~~~i~G~~~~~~R~~~i~~ 669 (864)
.++++|||++.....+.+...|+... +.+..++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47799999999999998888886431 114567899999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
|+++.. .+|++|.+++.|||+..+|.||++++|.+...++|++||++|.
T Consensus 323 fK~G~L---rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGEL---RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCc---eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 987544 4899999999999999999999999999999999999999985
No 74
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=2.2e-16 Score=161.83 Aligned_cols=328 Identities=18% Similarity=0.241 Sum_probs=216.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC-ceEEEeccccH-HHHHHHHHHHc--CCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~~-~~LIV~P~sll-~qW~~E~~~~~--p~~ 359 (864)
+..|-|...+..+ -.|+.||=+..+|+|||.. |+-++..|.....+ -.||++|..-+ .|-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 5677888888766 6789999999999999976 56666666666656 56999997666 45555554443 256
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc-ccC-----CcceeEEE
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLK-----PIKWQCMI 433 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~-~l~-----~~~w~~vI 433 (864)
++.+++|..+.-..-. .-..+.|++++|++.+..... .+. ..+-.++|
T Consensus 105 K~~vivGG~d~i~qa~--------------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--------------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhh--------------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 7778888765432111 112467899999998743221 111 12346899
Q ss_pred ecccccccCccc--HHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 002937 434 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (864)
Q Consensus 434 vDEaH~lkn~~s--~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~ 510 (864)
+|||.++-+..- .+.-....++. +..+++|||- .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999876421 11111222232 3568888883 222222211
Q ss_pred HHhHHHHHHHHhhHhhcCCCcE--EEEEEe-cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 511 MLAPHLLRRVKKDVMKELPPKK--ELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~--~~~v~v-~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
.|-.. .+.+.+ +-.+.-..+|..
T Consensus 204 -----------------~~i~k~~a~~~e~~~~vstvetL~q~------------------------------------- 229 (442)
T KOG0340|consen 204 -----------------CPITKSIAFELEVIDGVSTVETLYQG------------------------------------- 229 (442)
T ss_pred -----------------CCcccccceEEeccCCCCchhhhhhh-------------------------------------
Confidence 00000 000000 000000000000
Q ss_pred CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHH-cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~-~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
..++...+|-..|..+|....+ ....++||.|-+....+|.-.|+..++.+..+++.+++.+|-.+
T Consensus 230 -------------yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 230 -------------YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred -------------eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 0112245566777788887776 56789999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC-cEEEEEEEeCCCHHH--HHH
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEE--RMM 743 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy~lv~~~TiEe--~i~ 743 (864)
+.+|.+.... +|++|++++.|+|++.++.||++|.|-.|..|++|.||.-|-|..- .+. +++...+|- .|-
T Consensus 297 LsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiS---ivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 297 LSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAIS---IVTQRDVELLQAIE 370 (442)
T ss_pred HHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEE---EechhhHHHHHHHH
Confidence 9999765443 8999999999999999999999999999999999999999988764 333 444443332 333
Q ss_pred HHHHHhh
Q 002937 744 QMTKKKM 750 (864)
Q Consensus 744 ~~~~~K~ 750 (864)
+...+|+
T Consensus 371 ~~igkKl 377 (442)
T KOG0340|consen 371 EEIGKKL 377 (442)
T ss_pred HHHhccc
Confidence 3444444
No 75
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.5e-16 Score=169.68 Aligned_cols=321 Identities=16% Similarity=0.281 Sum_probs=211.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCC----CceEEEeccccH----HHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI----SPHLVVAPLSTL----RNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~----~~~LIV~P~sll----~qW~~E~~~~ 355 (864)
...|.|...+--. .-|+..+-+..+|+|||.. ++-++..|+.... .++||+||..-| ++-.+.+..|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 4566777665322 2366777788999999976 5666776665432 389999997655 3455566777
Q ss_pred cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEE
Q 002937 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 432 (864)
Q Consensus 356 ~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~v 432 (864)
+ ++.+....|.-+-+..-..+ ...+||||.|+..+..... .+..-...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~L--------------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAVL--------------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHHH--------------------------hhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 7 68888888887766532221 2467999999999865433 3333356789
Q ss_pred EecccccccCccc-HHHHHHHhcccc--cEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKNKDS-KLFSSLKQYSTR--HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn~~s-~~~~~l~~l~~~--~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+|||.|+...+- .....+..+.++ ..+|.|||- ...+.||.++
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------- 378 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------- 378 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------
Confidence 9999999865332 222334444444 448999994 1222222211
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
.|. ...-|++..+..- ...+..-+.++|
T Consensus 379 -----------------SL~--kPvrifvd~~~~~---------------------a~~LtQEFiRIR------------ 406 (691)
T KOG0338|consen 379 -----------------SLN--KPVRIFVDPNKDT---------------------APKLTQEFIRIR------------ 406 (691)
T ss_pred -----------------hcC--CCeEEEeCCcccc---------------------chhhhHHHheec------------
Confidence 111 1111222211100 000000000000
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
+. ...-+-.+|..++.++. ..+++||.+....+.-|.-.|-..|+++.-++|+.++.+|-..+..
T Consensus 407 -~~------------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 407 -PK------------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred -cc------------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 00 01112334455555544 5699999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCC-CcEEEEEEEeCCCHHHHHHH
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~~TiEe~i~~ 744 (864)
|.+..-+ +|++|+.++.||++..+-+||+|+.|-+...|++|.||.-|-|.. +.|. |+..+ |..|+.
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkllK 539 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLLK 539 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHHH
Confidence 9875544 899999999999999999999999999999999999999999865 4444 66655 444443
No 76
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.74 E-value=2.9e-17 Score=179.06 Aligned_cols=310 Identities=18% Similarity=0.238 Sum_probs=210.2
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC-ceEEEeccccH-HHHHHHHHHHcC---CC
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP---QM 359 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~~-~~LIV~P~sll-~qW~~E~~~~~p---~~ 359 (864)
..+-|..|+-.. ..+-..|+..-.|+|||+. +++.+..|...... -.+||+|..-+ -|-+..|.+.+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 445777777544 4456789999999999976 34445555443322 67999997655 677788888876 57
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEeccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEa 437 (864)
.+.+|.|...-...... ..+.+|+|-|+..+... ...+..-+.+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~r---------------------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIR---------------------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhhh---------------------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 88899887655432211 13567999999998653 44566667899999999
Q ss_pred ccccCccc---HHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 438 H~lkn~~s---~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
..|-...+ .....+..+. .+..+..|||=- .++.+ .|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLdn---------------------------------~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLDN---------------------------------LLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHHH---------------------------------HHHHHhc
Confidence 99966444 4445556664 456688999931 11111 1112221
Q ss_pred HHHHHHHH-hhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 514 PHLLRRVK-KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 514 ~~~lrr~k-~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
.-++-|.. .|+. -+.-+.++...+.... ....
T Consensus 223 dp~lVr~n~~d~~-L~GikQyv~~~~s~nn-----------------------------svee----------------- 255 (980)
T KOG4284|consen 223 DPALVRFNADDVQ-LFGIKQYVVAKCSPNN-----------------------------SVEE----------------- 255 (980)
T ss_pred ccceeecccCCce-eechhheeeeccCCcc-----------------------------hHHH-----------------
Confidence 11121221 1210 0111111111111100 0000
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
.--|++.|.+++..+.-. ..||||....-++-|.++|...|+++..|.|.|++.+|..+++.+++
T Consensus 256 -------------mrlklq~L~~vf~~ipy~--QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 256 -------------MRLKLQKLTHVFKSIPYV--QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred -------------HHHHHHHHHHHHhhCchH--HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 112555566666554432 67999999999999999999999999999999999999999999965
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
. ...+|+||+..+.|||-..+|.||++|++-+-..|.+||||++|.|..-
T Consensus 321 f---~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 F---RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred c---eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 4 3458999999999999999999999999999999999999999999764
No 77
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.74 E-value=2.3e-16 Score=184.50 Aligned_cols=322 Identities=16% Similarity=0.185 Sum_probs=192.9
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH----------HHHh----cCCCCceEEEecc-ccHH
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF----GERISPHLVVAPL-STLR 346 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i----------~~l~----~~~~~~~LIV~P~-sll~ 346 (864)
....|++.|.+.-+.+...+.+++..|+..+||+|||.|.--++ ..+. ....++++|++|. .+..
T Consensus 157 ~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 157 SKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred ccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 33678888888887777888999999999999999998742222 2111 1123489999996 4446
Q ss_pred HHHHHHHHHc-----CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc
Q 002937 347 NWEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS 421 (864)
Q Consensus 347 qW~~E~~~~~-----p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~ 421 (864)
|...++.+.. ++..+.+..|+..... ... .....++++.|.....
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l--- 286 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL--- 286 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc---
Confidence 7677776533 2445555566544210 000 0114578888754311
Q ss_pred cccCCcceeEEEecccccccCcccHHHHHHHhccc--ccEEEeecCCCCCCHhHHHhhhhhcC-CCCCCChHHHHHHHhc
Q 002937 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLD-AGKFGSLEEFQEEFKD 498 (864)
Q Consensus 422 ~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~--~~rllLTgTP~~n~~~el~~ll~~l~-p~~~~~~~~f~~~~~~ 498 (864)
..| ..+++||+||||..-...-.....++.+.. +..+++|||.-. ....+- .|+. |..+
T Consensus 287 ~~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l~---~~~~~p~~I------------ 348 (675)
T PHA02653 287 NKL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRIK---EFFPNPAFV------------ 348 (675)
T ss_pred ccc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHHH---HHhcCCcEE------------
Confidence 122 356799999999976554444444443322 357999999721 111111 1111 0000
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 002937 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (864)
Q Consensus 499 ~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk 578 (864)
. .. ...+.+...+.+.....+.+...|-.
T Consensus 349 -------------------~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~---------------------------- 377 (675)
T PHA02653 349 -------------------H-IP---GGTLFPISEVYVKNKYNPKNKRAYIE---------------------------- 377 (675)
T ss_pred -------------------E-eC---CCcCCCeEEEEeecCcccccchhhhH----------------------------
Confidence 0 00 00112222222211111111111100
Q ss_pred HhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHH-HHcCceEEEEeccHHHHHHHHHHHhhC--CCcEEEEe
Q 002937 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERID 655 (864)
Q Consensus 579 ~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l-~~~g~kvlIFsq~~~~ld~L~~~L~~~--g~~~~~i~ 655 (864)
..|...+ ..+... ...+.++|||+.....++.+.+.|... ++++..++
T Consensus 378 ----------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LH 428 (675)
T PHA02653 378 ----------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIH 428 (675)
T ss_pred ----------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEecc
Confidence 0011111 112111 124568999999999999999999876 79999999
Q ss_pred ccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC------------CcchhhHHHHHHHHhCC
Q 002937 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQ 723 (864)
Q Consensus 656 G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w------------np~~~~Qa~gR~~RiGQ 723 (864)
|+++.. ++++++|.. .+...+|++|+.++.||+++++++||.++... +...+.||.||++|.
T Consensus 429 G~Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-- 502 (675)
T PHA02653 429 GKVPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-- 502 (675)
T ss_pred CCcCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--
Confidence 999864 566777742 23345899999999999999999999997222 555778888888886
Q ss_pred CCcEEEEEEEeCCCH
Q 002937 724 TNKVMIFRLITRGSI 738 (864)
Q Consensus 724 ~~~V~Vy~lv~~~Ti 738 (864)
++-.+|+|+++...
T Consensus 503 -~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 -SPGTYVYFYDLDLL 516 (675)
T ss_pred -CCCeEEEEECHHHh
Confidence 46788899988765
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.73 E-value=5.5e-16 Score=191.85 Aligned_cols=292 Identities=16% Similarity=0.193 Sum_probs=184.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCC--C
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~--~ 359 (864)
|..++|+|..++..+ ..++++++..+||+|||..++..+..+. .....+|||+|. .+..|+.+.+..++.. .
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 346889999987655 5788999999999999975544443332 234589999995 6668999999998754 3
Q ss_pred eEEEEecChH----HHH-HHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEe
Q 002937 360 NVVMYVGTSQ----ARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (864)
Q Consensus 360 ~~~~~~g~~~----~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIv 434 (864)
.+.+..|... .+. ..... ....++|+|+|++.+......+....++++|+
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 4433443321 111 11110 11358999999999987666666667999999
Q ss_pred cccccccCcc--------------cHHHHHHHhcc-------------------------cccEEEeecCCCCCCHhH-H
Q 002937 435 DEGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDE-L 474 (864)
Q Consensus 435 DEaH~lkn~~--------------s~~~~~l~~l~-------------------------~~~rllLTgTP~~n~~~e-l 474 (864)
||||++-... .....++..++ ....++.|||.-+..... +
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l 287 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL 287 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH
Confidence 9999975311 11112222221 123466677753211100 0
Q ss_pred H-hhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 002937 475 F-MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (864)
Q Consensus 475 ~-~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~ 553 (864)
+ .++. +.+.
T Consensus 288 ~~~ll~--------------------------------------------------------~~v~-------------- 297 (1176)
T PRK09401 288 FRELLG--------------------------------------------------------FEVG-------------- 297 (1176)
T ss_pred hhccce--------------------------------------------------------EEec--------------
Confidence 0 0000 0000
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEecc
Q 002937 554 RNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQF 633 (864)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~ 633 (864)
.... .++.+ .|-|. ....|...|.+++..+ |..+|||++.
T Consensus 298 ----------~~~~-------~~rnI-~~~yi-------------------~~~~k~~~L~~ll~~l---~~~~LIFv~t 337 (1176)
T PRK09401 298 ----------SPVF-------YLRNI-VDSYI-------------------VDEDSVEKLVELVKRL---GDGGLIFVPS 337 (1176)
T ss_pred ----------Cccc-------ccCCc-eEEEE-------------------EcccHHHHHHHHHHhc---CCCEEEEEec
Confidence 0000 00000 00000 0113455555666543 5689999998
Q ss_pred HHH---HHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEee----ccccccCcCCCC-CCEEEEeCCC
Q 002937 634 QHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (864)
Q Consensus 634 ~~~---ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----t~a~~~GinL~~-a~~VI~~d~~ 705 (864)
... ++.|.++|...|+++..++|++ .+.+++|.++... +|++ |+.++.|||++. ..+||+|+.|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 666 9999999999999999999998 2346999876654 6777 688999999998 8999999998
Q ss_pred C------CcchhhHHHHHHHHhC
Q 002937 706 W------NPHADLQAMARAHRLG 722 (864)
Q Consensus 706 w------np~~~~Qa~gR~~RiG 722 (864)
- .......++||..++-
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CEEEeccccccCHHHHHHHHhhc
Confidence 7 5667788888886543
No 79
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=3.5e-17 Score=183.19 Aligned_cols=389 Identities=17% Similarity=0.199 Sum_probs=200.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc-CCCe
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMN 360 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~-p~~~ 360 (864)
..+|||||.+|++.....+..+.+|=|.+.+|+|||++++-+...+.. .++|.+||. +++.|-.+|...-. -+++
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 368999999999998888888999999999999999999999888765 589999995 77777554432211 1233
Q ss_pred EEEEecCh-HHHH--HHHHhhhcCCCCch--hhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEE
Q 002937 361 VVMYVGTS-QARN--IIREYEFYFPKNPK--KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (864)
Q Consensus 361 ~~~~~g~~-~~r~--~i~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vI 433 (864)
....+.+. -+|. .+..+++-++.... .+... ....+...+--|+++||+.+... .....--.||+||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~------~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE------MEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHH------HHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 33333322 2221 22223332222211 10000 01112334556999999998553 3334455899999
Q ss_pred ecccccccCc------ccHHHHH--HHhcccccEEEeecCCCC------CCHhHHHhhhhhcCCCCCCChHHHHHHHhcc
Q 002937 434 VDEGHRLKNK------DSKLFSS--LKQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (864)
Q Consensus 434 vDEaH~lkn~------~s~~~~~--l~~l~~~~rllLTgTP~~------n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~ 499 (864)
+|||||-.+. .|...+. -..+++..|+.+||||-- .+..|--..+.- ..+...|.+.|..+
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~S-----MDDe~~fGeef~rl 384 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSS-----MDDELTFGEEFHRL 384 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeec-----cchhhhhchhhhcc
Confidence 9999997431 1111111 122456788999999921 111110000000 11222233333322
Q ss_pred chHHHHHHHHHHHhHHHHHHHHhhHhhc-CCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcc---------hH
Q 002937 500 NQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI---------SL 569 (864)
Q Consensus 500 ~~~~~~~~L~~~l~~~~lrr~k~dv~~~-lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~---------~~ 569 (864)
.-. +.|..+ |......++-|.-.-.+.. ......+.+... ..
T Consensus 385 ~Fg-------------------eAv~rdlLTDYKVmvlaVd~~~i~~~---------~~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 385 GFG-------------------EAVERDLLTDYKVMVLAVDKEVIAGV---------LQSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred cHH-------------------HHHHhhhhccceEEEEEechhhhhhh---------hhhhccCcccccchhhhhhhhhh
Confidence 211 122222 3333444444431111111 111111111110 11
Q ss_pred HHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHH----Hh
Q 002937 570 INVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDY----LT 645 (864)
Q Consensus 570 ~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~----L~ 645 (864)
++.++.-.. -..+-.-......+....-.+..-++.|.++.- +|...++..... +.
T Consensus 437 wnGlakr~g-~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~-------------------sFe~Vve~Y~~Elk~d~~ 496 (1518)
T COG4889 437 WNGLAKRNG-EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAE-------------------SFETVVEAYDEELKKDFK 496 (1518)
T ss_pred hhhhhhhcc-ccccccCCcCCchHHHHHHHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHhcCC
Confidence 111111000 000000000000001111112222222222221 122222211111 12
Q ss_pred hCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC
Q 002937 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 646 ~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
...++...+||.|+..+|......-|........+|-..|++++|+++++.|.||||||--+-...+|+.||+.|....|
T Consensus 497 nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 497 NLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 23456778999999999966655444423333347999999999999999999999999888888899999999987654
Q ss_pred c-EEEEEEE
Q 002937 726 K-VMIFRLI 733 (864)
Q Consensus 726 ~-V~Vy~lv 733 (864)
. -+|.--+
T Consensus 577 ~yGYIILPI 585 (1518)
T COG4889 577 KYGYIILPI 585 (1518)
T ss_pred ccceEEEEe
Confidence 3 3444443
No 80
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=2.8e-16 Score=188.79 Aligned_cols=330 Identities=19% Similarity=0.205 Sum_probs=225.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc---C-C
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA---P-Q 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~---p-~ 358 (864)
.|+.||.+|++.+ .+|++.|+...||+|||... +.++..+........|+|-|. .|.......|.++. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999887 78899999999999999885 566677777777799999995 55566777788776 3 4
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc------cccCCcceeEE
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLKPIKWQCM 432 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~------~~l~~~~w~~v 432 (864)
+++..|+|+........- ...+.+|++|+|+++.... -....-.+.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~~--------------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRAI--------------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHHH--------------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 677888887665432111 1247899999999996521 11111237899
Q ss_pred EecccccccCc-ccHHHHHHHhcc--------cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHH
Q 002937 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (864)
Q Consensus 433 IvDEaH~lkn~-~s~~~~~l~~l~--------~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 503 (864)
|+||+|-.++. +|...-.++.+. ....++.|||- ++..+|.+.+....-
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f-- 257 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDF-- 257 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcc--
Confidence 99999999864 455555555542 23458888884 223333332211000
Q ss_pred HHHHHHHHHhHHHHHHHHhhHhh-cCCCcEEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhC
Q 002937 504 QISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (864)
Q Consensus 504 ~~~~L~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~v-~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~ 581 (864)
...+.. .-|....+.+.- +......+.
T Consensus 258 -----------------~~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 258 -----------------EVPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred -----------------eeeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 000111 122222222222 111110000
Q ss_pred cccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHH----HHHhhCC----CcEEE
Q 002937 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (864)
Q Consensus 582 hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~----~~L~~~g----~~~~~ 653 (864)
..-.+...+..++..+..+|-++|+|+.+...+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123455666777778888999999999999988885 3344444 56888
Q ss_pred EeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC-CcchhhHHHHHHHHhCCCCcEEEEEE
Q 002937 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (864)
Q Consensus 654 i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy~l 732 (864)
+.|++...+|.++...|+.++.. ++++|.|+-.||++.+.+.||....|- +-..+.|+.||++|-||.-.+ +..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEE
Confidence 89999999999999999876554 899999999999999999999999998 779999999999999954333 233
Q ss_pred EeCCCHHHHHHHH
Q 002937 733 ITRGSIEERMMQM 745 (864)
Q Consensus 733 v~~~TiEe~i~~~ 745 (864)
.-.+-++..+...
T Consensus 419 ~~~~~~d~yy~~~ 431 (851)
T COG1205 419 LRSDPLDSYYLRH 431 (851)
T ss_pred eCCCccchhhhhC
Confidence 3366677776543
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.73 E-value=9.3e-16 Score=172.31 Aligned_cols=303 Identities=17% Similarity=0.283 Sum_probs=203.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p--~ 358 (864)
-+|...|..+++-+..-..... +=+|--++|+|||+.|+..+......+ .-....+|+.++ .|-.+.+.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 4788999999987755444433 458888999999999876666655554 367888999888 577888999996 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+.+...+|+-.........+- -.....+++|-|+..+.....+- +..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~----------------------l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQ----------------------LASGEIDIVVGTHALIQDKVEFH---NLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHHH----------------------HhCCCCCEEEEcchhhhcceeec---ceeEEEEeccc
Confidence 777888887655432222110 11245789999999886543332 34689999999
Q ss_pred cccCcccHHHHHHHhc-c-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHH
Q 002937 439 RLKNKDSKLFSSLKQY-S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l-~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~ 516 (864)
|+.- .....|..- . ..+.|.|||||++-++. ...|++..
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDld---------------- 435 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLD---------------- 435 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhcccc----------------
Confidence 9863 333444443 2 47999999999866532 11122211
Q ss_pred HHHHHhhHhhcCCCcEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccC
Q 002937 517 LRRVKKDVMKELPPKKELILRVELSS-KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (864)
Q Consensus 517 lrr~k~dv~~~lp~~~~~~v~v~ls~-~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~ 595 (864)
-.+.+++|+...-+...-+.. .-.+.|+.+
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i-------------------------------------------- 466 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYERI-------------------------------------------- 466 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHHH--------------------------------------------
Confidence 123457887643332222221 112222222
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHH--------HHHHHHHHh--hCCCcEEEEeccCCHHHHHH
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 665 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~--------ld~L~~~L~--~~g~~~~~i~G~~~~~~R~~ 665 (864)
.+-...|+++.+.|.-+.. +..+.+.|. ..++++..++|.++++++++
T Consensus 467 ----------------------~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 467 ----------------------REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred ----------------------HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 1112346666666554321 222333333 23678999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCC-CCcchhhHHHHHHHHhCCCC
Q 002937 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
++.+|+++... +|+||.+...|||++.|+.+||.++. +--++.-|-.||++|=+...
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 99999886655 89999999999999999999999986 68888999999999954443
No 82
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.72 E-value=5.7e-18 Score=174.41 Aligned_cols=339 Identities=19% Similarity=0.302 Sum_probs=219.2
Q ss_pred CCCccccccccCCCCCCC------CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHh--------c
Q 002937 266 KKPKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF--------G 330 (864)
Q Consensus 266 ~~~~~~~~~~~~p~~~~~------~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~--------~ 330 (864)
++-++|.....+-..+.+ ....|.|..|+--. -.|+..|=..-+|+|||++. +-++...+ .
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 344566666555444321 25778899987544 56777776678999999762 22222211 1
Q ss_pred CCCCce-EEEeccccH-HHHHHHHHHH--------cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCcccccc
Q 002937 331 ERISPH-LVVAPLSTL-RNWEREFATW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSES 400 (864)
Q Consensus 331 ~~~~~~-LIV~P~sll-~qW~~E~~~~--------~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 400 (864)
.+.||+ |||||..-+ .|-..-++.+ .|.++.....|.-..+..+...
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v----------------------- 299 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV----------------------- 299 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-----------------------
Confidence 234565 999997655 3433333333 2666666667766665543321
Q ss_pred ccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHH
Q 002937 401 KQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELF 475 (864)
Q Consensus 401 ~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~ 475 (864)
....++++.|+..+..... .+..--..++.+|||.|+-..+ ......+..++. +..||.|||-- ..
T Consensus 300 ---~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP----~K-- 370 (610)
T KOG0341|consen 300 ---RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMP----KK-- 370 (610)
T ss_pred ---hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeecccc----HH--
Confidence 2357899999988754221 1111234579999999986533 333344444443 35688899841 00
Q ss_pred hhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q 002937 476 MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRN 555 (864)
Q Consensus 476 ~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~ 555 (864)
...|. +..+ .. ..+|.|.-
T Consensus 371 -----------------IQ~FA-----------------------kSAL---VK---PvtvNVGR--------------- 389 (610)
T KOG0341|consen 371 -----------------IQNFA-----------------------KSAL---VK---PVTVNVGR--------------- 389 (610)
T ss_pred -----------------HHHHH-----------------------Hhhc---cc---ceEEeccc---------------
Confidence 00000 0000 00 11222210
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHH
Q 002937 556 YQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH 635 (864)
Q Consensus 556 ~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~ 635 (864)
....-++++.++ ..+...+|+..|.+.|++ ..-+||||+....
T Consensus 390 ---------AGAAsldViQev-------------------------EyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 390 ---------AGAASLDVIQEV-------------------------EYVKQEAKIVYLLECLQK---TSPPVLIFAEKKA 432 (610)
T ss_pred ---------ccccchhHHHHH-------------------------HHHHhhhhhhhHHHHhcc---CCCceEEEecccc
Confidence 011112222221 223455677777666654 5669999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHH
Q 002937 636 MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (864)
Q Consensus 636 ~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~ 715 (864)
-.|-|.+||-..|...+.|+|+-.+++|..+|+.|+.+..+ +|++|++++-|+++++..+||+||.|-.-.+|.+|+
T Consensus 433 DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRI 509 (610)
T KOG0341|consen 433 DVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRI 509 (610)
T ss_pred ChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999987665 799999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEEEEeCCCHHHHHH
Q 002937 716 ARAHRLGQTNKVMIFRLITRGSIEERMM 743 (864)
Q Consensus 716 gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~ 743 (864)
||.+|-|.+--.+ .|+-+++-|.-++
T Consensus 510 GRTGRsg~~GiAT--TfINK~~~esvLl 535 (610)
T KOG0341|consen 510 GRTGRSGKTGIAT--TFINKNQEESVLL 535 (610)
T ss_pred cccCCCCCcceee--eeecccchHHHHH
Confidence 9999999775443 4666666555444
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.72 E-value=9.3e-16 Score=169.62 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=71.0
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCC--CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g--~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI 700 (864)
.+.|+|||++....++.+...|...| +.+..++|.++..+|.+.. ...+|++|++++.|||+... .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCCc-eEE
Confidence 57899999999999999999998764 5788999999999887653 22489999999999999864 666
Q ss_pred EeCCCCCcchhhHHHHHHH
Q 002937 701 IYDSDWNPHADLQAMARAH 719 (864)
Q Consensus 701 ~~d~~wnp~~~~Qa~gR~~ 719 (864)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 567889999999974
No 84
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=7.3e-16 Score=165.49 Aligned_cols=121 Identities=17% Similarity=0.362 Sum_probs=93.3
Q ss_pred cccHHH--HHHHHHHHHHH--cCceEEEEeccHHHHHHHHH----HHhh------------------CCCcEEEEeccCC
Q 002937 606 SSGKLQ--LLDKMMVKLKE--QGHRVLIYSQFQHMLDLLED----YLTF------------------KKWQYERIDGKVG 659 (864)
Q Consensus 606 ~s~Kl~--~l~~ll~~l~~--~g~kvlIFsq~~~~ld~L~~----~L~~------------------~g~~~~~i~G~~~ 659 (864)
..+|+. .|..+|....+ ...|+|||....++.+.=.+ .+.. .+.++.+++|+++
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 344444 34455544332 34588999777666554333 3322 2457999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 660 ~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
+++|..+.+.|...... +|++|++++.||||+.+..||-||+|..+..+++|+||.-|+|-+-....
T Consensus 483 QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred HHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 99999999999775554 89999999999999999999999999999999999999999998865543
No 85
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=9.5e-16 Score=163.37 Aligned_cols=319 Identities=18% Similarity=0.307 Sum_probs=214.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcC-----CCCce-EEEecc-ccHHHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RISPH-LVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~-----~~~~~-LIV~P~-sll~qW~~E~~~~~ 356 (864)
+..|-|-.+|.-. ..++.+|=..-+|+|||...+ -.+.++... +.+|+ ||+||. ++-.|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 4566666665432 356677767789999996532 223333322 34576 677885 55578888998885
Q ss_pred --CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEE
Q 002937 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (864)
Q Consensus 357 --p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~v 432 (864)
-+++++..+|.....+.+..+ .....+||+|++.+.... ....-.+..++
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 478888877776655544433 146789999999885432 22233356789
Q ss_pred EecccccccCcc--cHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+|||.++-..+ .+.......++. +..|+.|||- . ..+.+|
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~l- 418 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKL- 418 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHH-
Confidence 999999986433 344444555554 4568889983 1 111111
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
..+++. -|.. +|..++...-. -+.+.--+|
T Consensus 419 -----------ard~L~--dpVr--vVqg~vgean~--------------------------dITQ~V~V~--------- 448 (731)
T KOG0339|consen 419 -----------ARDILS--DPVR--VVQGEVGEANE--------------------------DITQTVSVC--------- 448 (731)
T ss_pred -----------HHHHhc--CCee--EEEeehhcccc--------------------------chhheeeec---------
Confidence 112211 1111 11111110000 000000000
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
-....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+.+..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 012346777777776666655 89999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
|...... +|+.|+....|+++....+||+||.--.-....|++||.+|-|.+ -..|.|+|....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876555 799999999999999999999999998899999999999999976 5668899876444
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.69 E-value=6.8e-15 Score=175.00 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=103.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..|.++|.++++.+...+ .+...+|...||+|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 479999999998885543 456789999999999999877776655543 479999995 67799999999877 46788
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccC
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn 442 (864)
+++|..........+.- ......+|+|+|+..+.. .+ -+..+||+||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~---p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL---PF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc---cc--cCCCEEEEECCCcccc
Confidence 88876544332221100 011346899999876632 12 2467999999998632
Q ss_pred c--cc-----HHHHHHH-hcccccEEEeecCCC
Q 002937 443 K--DS-----KLFSSLK-QYSTRHRVLLTGTPL 467 (864)
Q Consensus 443 ~--~s-----~~~~~l~-~l~~~~rllLTgTP~ 467 (864)
. .. .....++ .......+++||||-
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCC
Confidence 1 11 1111111 223456789999993
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=2.8e-15 Score=155.80 Aligned_cols=316 Identities=18% Similarity=0.286 Sum_probs=207.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHH------hcCCCC-ceEEEeccccH-HHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASL------FGERIS-PHLVVAPLSTL-RNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l------~~~~~~-~~LIV~P~sll-~qW~~E~~~~ 355 (864)
+..|.|-.+ |= ..-+|..+|-...+|+|||+.-+.-- .++ +....+ ..||++|..-| .|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 566677665 32 23678899999999999997643211 111 112233 57888996555 5566676555
Q ss_pred c-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEE
Q 002937 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (864)
Q Consensus 356 ~-p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~v 432 (864)
. -++..++++|...-...+.+. ..+.+++|.|+..+... ...+..-...++
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 356666666655444444432 23578999999888542 233333456789
Q ss_pred EecccccccC--cccHHHHHHHhcccccE-EEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHR-VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 433 IvDEaH~lkn--~~s~~~~~l~~l~~~~r-llLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
|+|||.++.. ...++.+.|..++..+. ++-|||-
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------------- 408 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------------- 408 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-------------------------------------------
Confidence 9999999964 55788889999876655 5556773
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
|.-+||+....+++ |...++=.+.|... ....|. .+
T Consensus 409 ----P~~VrrLa~sY~Ke--p~~v~vGsLdL~a~------------------------------~sVkQ~----i~---- 444 (629)
T KOG0336|consen 409 ----PEGVRRLAQSYLKE--PMIVYVGSLDLVAV------------------------------KSVKQN----II---- 444 (629)
T ss_pred ----chHHHHHHHHhhhC--ceEEEecccceeee------------------------------eeeeee----EE----
Confidence 01122222221110 11111111111100 000000 00
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
.-..+.|+..+..++..+ ....|+|||+....++|-|..-|...|+....++|.-.+.+|+.+++.
T Consensus 445 -------------v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 445 -------------VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred -------------ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 001244555555555544 346799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 670 Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
|.. +.+.+|++|+.++.||+++...+|+.||-|-|-..|.+|+||.+|.|.+-.- ..|++.+
T Consensus 511 ~ks---G~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 511 FKS---GEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred hhc---CceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 954 5556899999999999999999999999999999999999999999976432 2355554
No 88
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.5e-15 Score=156.64 Aligned_cols=336 Identities=19% Similarity=0.285 Sum_probs=204.3
Q ss_pred CccccccccCCCCCCCC------CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCC-ceEEE
Q 002937 268 PKEFQQYEHSPEFLSGG------SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVV 339 (864)
Q Consensus 268 ~~~~~~~~~~p~~~~~~------~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~-~~LIV 339 (864)
.+.|..+.-.|+.+.|. .....|..++-.|. ....++.|-....|+|||... ++.+...-..... -.+-+
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll--~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLL--AEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhh--cCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 45677777788777652 45557777775542 245667788889999999653 3333322111111 34556
Q ss_pred ecc-ccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHH
Q 002937 340 APL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN 418 (864)
Q Consensus 340 ~P~-sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~ 418 (864)
+|. .+..|-..-+.+.+....+..-+.-.+.+ ..+......+|+|-|+.++.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---------------------------~~rG~~i~eqIviGTPGtv~ 219 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSK---------------------------AKRGNKLTEQIVIGTPGTVL 219 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---------------------------cccCCcchhheeeCCCccHH
Confidence 995 44455555455443222222111111110 01122355689999999986
Q ss_pred hccccc---CCcceeEEEecccccccCccc---HHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHH
Q 002937 419 LDSASL---KPIKWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (864)
Q Consensus 419 ~~~~~l---~~~~w~~vIvDEaH~lkn~~s---~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 491 (864)
.....| ..-+..++|+|||..+-+..+ ........+. ....++.|||-.
T Consensus 220 Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~------------------------ 275 (477)
T KOG0332|consen 220 DLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV------------------------ 275 (477)
T ss_pred HHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH------------------------
Confidence 654433 333567899999998866442 2222233333 456688888831
Q ss_pred HHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 002937 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (864)
Q Consensus 492 f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~ 571 (864)
+ ....|.. +-+|......+.-+- .+ +.
T Consensus 276 --e----------------~V~~Fa~--------kivpn~n~i~Lk~ee--------------------------l~-L~ 302 (477)
T KOG0332|consen 276 --E----------------KVAAFAL--------KIVPNANVIILKREE--------------------------LA-LD 302 (477)
T ss_pred --H----------------HHHHHHH--------HhcCCCceeeeehhh--------------------------cc-cc
Confidence 0 0001111 112222222211000 00 00
Q ss_pred HHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcE
Q 002937 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (864)
Q Consensus 572 ~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~ 651 (864)
.+.++.-.|.+ ...|+++|..+. .+..-| ..||||+-..++..|...|...|+.+
T Consensus 303 ~IkQlyv~C~~-----------------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V 357 (477)
T KOG0332|consen 303 NIKQLYVLCAC-----------------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQV 357 (477)
T ss_pred chhhheeeccc-----------------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHHHHhcCcee
Confidence 00111111111 244677777633 333334 68999999999999999999999999
Q ss_pred EEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC------CcchhhHHHHHHHHhCCCC
Q 002937 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 652 ~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w------np~~~~Qa~gR~~RiGQ~~ 725 (864)
..++|.+...+|..++++|+.+... +|++|.++++||+.+.++.||+||.|- .|..|++|+||.+|.|.+-
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999999876654 899999999999999999999999974 5678999999999999654
Q ss_pred cEEEEEEE-eCCCHH
Q 002937 726 KVMIFRLI-TRGSIE 739 (864)
Q Consensus 726 ~V~Vy~lv-~~~TiE 739 (864)
+.| .|+ .+++.+
T Consensus 435 -~a~-n~v~~~~s~~ 447 (477)
T KOG0332|consen 435 -LAI-NLVDDKDSMN 447 (477)
T ss_pred -eEE-EeecccCcHH
Confidence 333 344 344444
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=2.5e-16 Score=148.49 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q 002937 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (864)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~ 687 (864)
.|+..+..++.+..+.+.++|||++....++.+.++|...+.++..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888899998887767889999999999999999999988999999999999999999999998765 3478999999
Q ss_pred ccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
++|+|++.+++||+++++||+..+.|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877664
No 90
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4.8e-16 Score=155.89 Aligned_cols=165 Identities=26% Similarity=0.401 Sum_probs=110.0
Q ss_pred CCCchHHHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCC
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~---~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~ 359 (864)
.+|||||.+++.-+...+... ++++|..+||+|||++++.++..+.. ++||+||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 368999999998887776654 88999999999999999998888877 99999996 77799999998887654
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc-------------cCC
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~-------------l~~ 426 (864)
............. ...+ ..................++++++++.+...... +..
T Consensus 78 ~~~~~~~~~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD----SKEF---------ISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEE---------ETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc----cccc---------cccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4443221110000 0000 0000000001112234678999999999765322 222
Q ss_pred cceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCC
Q 002937 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (864)
Q Consensus 427 ~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~ 467 (864)
..+++||+||||++.+... ++.+......++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3689999999999876443 55555578889999999994
No 91
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=2.4e-16 Score=158.97 Aligned_cols=302 Identities=19% Similarity=0.238 Sum_probs=205.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCC-CceEEEeccccH----HHHHHHHHHHcCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-SPHLVVAPLSTL----RNWEREFATWAPQ 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~-~~~LIV~P~sll----~qW~~E~~~~~p~ 358 (864)
...|.|.+++--. -.|+..+.-..-|+|||..- |-.+..+-.... -..+|++|..-+ +|-..++.++. +
T Consensus 107 kPSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 4556677765322 34555566678899999653 333333322221 267999996444 56777888877 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
+.+.+-+|....|..|-.. ....+++|.|+..+..... .-.-.+...+|+||
T Consensus 182 i~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DE 235 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDE 235 (459)
T ss_pred eEEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEech
Confidence 8888888887766543221 2356899999988754321 11122456899999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
|..+-+.. ....+.+.-++ .+..++.|||-- . . ++
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~~rQillySATFP-~------------------t-----------------------Vk 273 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPKERQILLYSATFP-L------------------T-----------------------VK 273 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCccceeeEEecccc-h------------------h-----------------------HH
Confidence 99987543 33344444454 445577888830 0 1 11
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.||-|.+++-. +..+.-+|+..-
T Consensus 274 ~Fm~~~l~kPy--------~INLM~eLtl~G------------------------------------------------- 296 (459)
T KOG0326|consen 274 GFMDRHLKKPY--------EINLMEELTLKG------------------------------------------------- 296 (459)
T ss_pred HHHHHhccCcc--------eeehhhhhhhcc-------------------------------------------------
Confidence 22222222211 111111111100
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
-..+...++.+.|+..|.-++.++.-+ ..||||+++...++|+..+...||+...++..|.++.|......|.++
T Consensus 297 ---vtQyYafV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G 371 (459)
T KOG0326|consen 297 ---VTQYYAFVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG 371 (459)
T ss_pred ---hhhheeeechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc
Confidence 001122344677888888888887644 789999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCC
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~ 724 (864)
.-. .|++|+..-.||++++++.||+||-+-|+..|++|+||.+|.|--
T Consensus 372 ~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 372 KCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred ccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 543 699999999999999999999999999999999999999999964
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.9e-14 Score=168.81 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=106.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+...|..|||||.++...+.|..+|...|+++..++|.....+|+.+.+.|+.+. ++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEecc
Confidence 456888999999999999999999999999999999999999999999999999999999999997652 799999
Q ss_pred ccccCcCCC-C-------------------------------------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLA-T-------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~-~-------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|+. + .=+||.-+..-|-..+.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999976 2 23788888999999999999999999987655
Q ss_pred EEE
Q 002937 728 MIF 730 (864)
Q Consensus 728 ~Vy 730 (864)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 543
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=8e-14 Score=142.77 Aligned_cols=316 Identities=18% Similarity=0.198 Sum_probs=208.2
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCe
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMN 360 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 360 (864)
.+|+|.|+|..+.+-+...+.+....|+..-+|.|||=+....+...++.+ +.+.|..| ..+.-.-..-++.-+++..
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCC
Confidence 468999999999999999999999999999999999988877777766654 58899999 4666666667777778888
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l 440 (864)
+...+|...... ...=|+-||++.++- .-.||++||||+..+
T Consensus 173 I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVDAF 214 (441)
T COG4098 173 IDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVDAF 214 (441)
T ss_pred eeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccccc
Confidence 988888775431 112255566666542 224799999999987
Q ss_pred cC-cccHHHHHHHhcc--cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH-HH
Q 002937 441 KN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP-HL 516 (864)
Q Consensus 441 kn-~~s~~~~~l~~l~--~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~-~~ 516 (864)
-= .+-.+..+++.-. ...++.|||||-..-..++. +.-+.. .+
T Consensus 215 P~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~---------------------------------~g~~~~~kl 261 (441)
T COG4098 215 PFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKIL---------------------------------KGNLRILKL 261 (441)
T ss_pred cccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhh---------------------------------hCCeeEeec
Confidence 42 2233444444432 34679999999311000000 000000 00
Q ss_pred HHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCc
Q 002937 517 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (864)
Q Consensus 517 lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~ 596 (864)
-+|... +.||-....+ +. ..-+. +
T Consensus 262 p~RfH~---~pLpvPkf~w--~~--~~~k~--------------------------l----------------------- 285 (441)
T COG4098 262 PARFHG---KPLPVPKFVW--IG--NWNKK--------------------------L----------------------- 285 (441)
T ss_pred chhhcC---CCCCCCceEE--ec--cHHHH--------------------------h-----------------------
Confidence 011111 1122111111 11 00000 0
Q ss_pred hHHHHHhhhcccHHH-HHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEec-cCCHHHHHHHHHHhcCCC
Q 002937 597 NESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG-KVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 597 ~~~~~~l~~~s~Kl~-~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G-~~~~~~R~~~i~~Fn~~~ 674 (864)
.-+|+. .|...|++....|..++||...+.+++.....|+. ++++..+.. ......|.+.+++|+++.
T Consensus 286 ---------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~G~ 355 (441)
T COG4098 286 ---------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRDGK 355 (441)
T ss_pred ---------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHcCc
Confidence 011222 45677788888899999999999999999999853 344444322 122457899999997754
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCC--CCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~--wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
+.+|++|..+..|++++..|+.++=.-. ++-+..+|.-||++|--....-.|+.|-.--|-
T Consensus 356 ---~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 356 ---ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred ---eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 4589999999999999999999886554 888999999999999766555556666544443
No 94
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.65 E-value=4.4e-15 Score=160.72 Aligned_cols=314 Identities=18% Similarity=0.244 Sum_probs=208.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEeccccHH-HHHHHHHHHcCC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQ--M 359 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~sll~-qW~~E~~~~~p~--~ 359 (864)
.+|.|-|.-+|.. ..-.|.+-++...|++|||+++ +|-+..++.. .+++|.++|.-.+. |=.++|..-+.. +
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4799999999853 3478899999999999999986 6666665554 35999999976664 445667654433 4
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc---ccccCCcceeEEEecc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~---~~~l~~~~w~~vIvDE 436 (864)
.+-+-.|....+.. .+. .......+.||+|-||+-+.-. ...+. +...|||||
T Consensus 291 kvairVG~srIk~~-------------------~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKTR-------------------EEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhccc-------------------CCc---cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 44445554433211 000 0112346789999999987432 22333 456899999
Q ss_pred cccccC--cccHHHHH---HHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 002937 437 GHRLKN--KDSKLFSS---LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (864)
Q Consensus 437 aH~lkn--~~s~~~~~---l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~ 510 (864)
.|.+.. .+..+--. ++.+. ....+.||||- .|+.||...|..--.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV--------------------------- 397 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLV--------------------------- 397 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeE---------------------------
Confidence 999975 23333333 33333 36679999995 566666554331000
Q ss_pred HHhHHHHHHHHhhHhhc-CCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCC
Q 002937 511 MLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~-lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
.-.. --|...+.+.+.=.
T Consensus 398 -------------~y~~RPVplErHlvf~~~e------------------------------------------------ 416 (830)
T COG1202 398 -------------LYDERPVPLERHLVFARNE------------------------------------------------ 416 (830)
T ss_pred -------------eecCCCCChhHeeeeecCc------------------------------------------------
Confidence 0000 11222333333211
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHH----c--CceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE----Q--GHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~----~--g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R 663 (864)
+.|...+.++.+.-.. . ...+|||+.+..-...|.++|..+|++..-++++.+..+|
T Consensus 417 -----------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 417 -----------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred -----------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 1222223333322111 1 2379999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eCCCC-CcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
+.+-..|.+..- ..+++|.|+|.|+|+++. .||| +...| +|+.+.|..||++|.|=...-.||-++-.|
T Consensus 480 k~vE~~F~~q~l---~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 480 KSVERAFAAQEL---AAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHhcCCc---ceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999976544 478999999999999964 4444 45566 999999999999999988888888888543
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.65 E-value=2e-14 Score=178.37 Aligned_cols=279 Identities=14% Similarity=0.166 Sum_probs=172.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCC--e
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~--~ 360 (864)
..+.|+|..++..+ ..|++.++..+||+|||..++.++..+... ...+|||+|. .+..|+.+.+..++... .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 35788999988665 578899999999999998666555544333 3589999995 56688999999887532 2
Q ss_pred E---EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccc
Q 002937 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (864)
Q Consensus 361 ~---~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEa 437 (864)
+ ..|+|...........+- .....++|+|+|+..+......+.. .++++|+|||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 346665433321111000 0113589999999999876555554 7899999999
Q ss_pred ccccCcccH--------------HHHH----------------------HHhccccc---EEEeecCCCCCCHhHHHhhh
Q 002937 438 HRLKNKDSK--------------LFSS----------------------LKQYSTRH---RVLLTGTPLQNNLDELFMLM 478 (864)
Q Consensus 438 H~lkn~~s~--------------~~~~----------------------l~~l~~~~---rllLTgTP~~n~~~el~~ll 478 (864)
|++-..... ...+ +..+.... .++.|||+.+......+ +
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~ 286 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--F 286 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--c
Confidence 998542110 1111 11111111 23457884332211100 0
Q ss_pred hhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Q 002937 479 HFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI 558 (864)
Q Consensus 479 ~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~ 558 (864)
. ..+ .+.+.
T Consensus 287 r----~ll------------------------------------------------~~~v~------------------- 295 (1171)
T TIGR01054 287 R----ELL------------------------------------------------GFEVG------------------- 295 (1171)
T ss_pred c----ccc------------------------------------------------ceEec-------------------
Confidence 0 000 00000
Q ss_pred HHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccH---H
Q 002937 559 LTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---H 635 (864)
Q Consensus 559 l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~---~ 635 (864)
.... .++. ..|.|.. ...+...|.+++..+ |.++|||++.. .
T Consensus 296 -----~~~~-------~~r~-I~~~~~~-------------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~ 340 (1171)
T TIGR01054 296 -----GGSD-------TLRN-VVDVYVE-------------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKE 340 (1171)
T ss_pred -----Cccc-------cccc-eEEEEEe-------------------cccHHHHHHHHHHHc---CCCEEEEEeccccHH
Confidence 0000 0000 0011110 011122344555443 56899999998 8
Q ss_pred HHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEee----ccccccCcCCCC-CCEEEEeCCC
Q 002937 636 MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (864)
Q Consensus 636 ~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----t~a~~~GinL~~-a~~VI~~d~~ 705 (864)
.++.|..+|...|+++..++|.++ +++++.|.++... +|++ |..+++|||++. .++||+||.|
T Consensus 341 ~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 341 KAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999999999999999999999986 4789999876554 6777 588999999998 8999999987
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=172.47 Aligned_cols=309 Identities=20% Similarity=0.181 Sum_probs=188.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHc-CCCeEE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA-PQMNVV 362 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~-p~~~~~ 362 (864)
+|+|.|.++|.-.. ..+.|+|++.+||+|||+.|..++..-..++.++++.||| .++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 89999999985432 3389999999999999999977776666665679999999 566677788888443 278999
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccccc--CCcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l--~~~~w~~vIvDEaH~l 440 (864)
+++|+.+... .....++|+|||||.+-.-.... -....++||+||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 12357899999999985321111 1235689999999999
Q ss_pred cCc-cc----HHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 441 KNK-DS----KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 441 kn~-~s----~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
... .. .....+..+.. -..++||||- .|..|+...++ ...+.+.-.|...+
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL~---a~~~~~~~rp~~l~------------------ 215 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWLN---AKLVESDWRPVPLR------------------ 215 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHhC---CcccccCCCCcccc------------------
Confidence 765 11 11222222233 3568999994 34455444333 11110000000000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
| ..|.. .......-...
T Consensus 216 ----~-------~v~~~-~~~~~~~~~~k--------------------------------------------------- 232 (766)
T COG1204 216 ----R-------GVPYV-GAFLGADGKKK--------------------------------------------------- 232 (766)
T ss_pred ----c-------CCccc-eEEEEecCccc---------------------------------------------------
Confidence 0 00000 00000000000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh----C-----------------------
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K----------------------- 647 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~----~----------------------- 647 (864)
.....+...+..++....+.|..+|||+++..........|.. .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011122233334444456677888888876543333333320 0
Q ss_pred ----------CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE-----eC-----CCCC
Q 002937 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 707 (864)
Q Consensus 648 ----------g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~-----~d-----~~wn 707 (864)
-..+..-+.+++.++|+-+-+.|+++ .+.+|++|..++.|+||++= +||+ || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g---~ikVlv~TpTLA~GVNLPA~-~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG---KIKVLVSTPTLAAGVNLPAR-TVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC---CceEEEechHHhhhcCCcce-EEEEeeeEEEcCCCCeEECc
Confidence 01234456778899999999999764 34589999999999999964 4444 55 2346
Q ss_pred cchhhHHHHHHHHhCCC
Q 002937 708 PHADLQAMARAHRLGQT 724 (864)
Q Consensus 708 p~~~~Qa~gR~~RiGQ~ 724 (864)
+....|..||++|.|=.
T Consensus 380 ~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 380 VLDVLQMAGRAGRPGYD 396 (766)
T ss_pred hhhHhhccCcCCCCCcC
Confidence 78899999999999854
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.9e-14 Score=165.13 Aligned_cols=295 Identities=17% Similarity=0.185 Sum_probs=180.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCch
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~ 386 (864)
+|...||+|||.+.+.++......+ +.+||++|. ++..|+.+.|++.+ +..+.+++|.....+....+.-
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~------- 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRK------- 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHH-------
Confidence 3566899999999888777766543 479999995 67799999999877 4567788876543322221100
Q ss_pred hhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccccc--CcccH------HHHHHHhccccc
Q 002937 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK--NKDSK------LFSSLKQYSTRH 458 (864)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lk--n~~s~------~~~~l~~l~~~~ 458 (864)
......+|+|+|+..+.. .+ .+.++|||||.|... ....- ............
T Consensus 72 ---------------~~~g~~~IVVGTrsalf~---p~--~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~ 131 (505)
T TIGR00595 72 ---------------VKNGEILVVIGTRSALFL---PF--KNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCP 131 (505)
T ss_pred ---------------HHcCCCCEEECChHHHcC---cc--cCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCC
Confidence 011356799999987742 22 245899999999864 22111 111222234567
Q ss_pred EEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEe
Q 002937 459 RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRV 538 (864)
Q Consensus 459 rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v 538 (864)
.+++||||. ++.++.... +.+ .-. . +-+|... ..+|. ..++
T Consensus 132 vil~SATPs---les~~~~~~----g~~----------~~~-------~--------l~~r~~~---~~~p~--v~vi-- 172 (505)
T TIGR00595 132 VVLGSATPS---LESYHNAKQ----KAY----------RLL-------V--------LTRRVSG---RKPPE--VKLI-- 172 (505)
T ss_pred EEEEeCCCC---HHHHHHHhc----CCe----------EEe-------e--------chhhhcC---CCCCe--EEEE--
Confidence 899999994 221111100 000 000 0 0000000 01111 1111
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHH
Q 002937 539 ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMV 618 (864)
Q Consensus 539 ~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~ 618 (864)
.|... .+ .+.--..|.+.+.
T Consensus 173 d~~~~--------------------------------~~----------------------------~~~ls~~l~~~i~ 192 (505)
T TIGR00595 173 DMRKE--------------------------------PR----------------------------QSFLSPELITAIE 192 (505)
T ss_pred ecccc--------------------------------cc----------------------------cCCccHHHHHHHH
Confidence 11100 00 0000123445556
Q ss_pred HHHHcCceEEEEeccHH------------------------------------------------------------HHH
Q 002937 619 KLKEQGHRVLIYSQFQH------------------------------------------------------------MLD 638 (864)
Q Consensus 619 ~l~~~g~kvlIFsq~~~------------------------------------------------------------~ld 638 (864)
+..+.|+++|||.+-.. -.+
T Consensus 193 ~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte 272 (505)
T TIGR00595 193 QTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTE 272 (505)
T ss_pred HHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHH
Confidence 66677999999943211 146
Q ss_pred HHHHHHhhC--CCcEEEEeccCCHHHH--HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC---Cc---
Q 002937 639 LLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP--- 708 (864)
Q Consensus 639 ~L~~~L~~~--g~~~~~i~G~~~~~~R--~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w---np--- 708 (864)
.+++.|... +.++.++|+.++..++ +++++.|.+++.. +|++|...+.|+|++.++.|+++|.|- .|
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 677777654 7899999999877665 8899999875544 799999999999999999998887763 33
Q ss_pred ------chhhHHHHHHHHhCCCCcEEEEEEE
Q 002937 709 ------HADLQAMARAHRLGQTNKVMIFRLI 733 (864)
Q Consensus 709 ------~~~~Qa~gR~~RiGQ~~~V~Vy~lv 733 (864)
+.+.|+.||++|-+....|.|..+-
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 5689999999998877767654433
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.64 E-value=2e-14 Score=172.28 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=91.1
Q ss_pred CceEEEEeccHHHHHHHHHHHhh---CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEE
Q 002937 624 GHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (864)
Q Consensus 624 g~kvlIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI 700 (864)
+.++|||.......+.+.+.|.. .++.+..++|+++.++|+++++.|.++ ...+|++|+.++.||+++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G---~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG---RRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC---CeEEEEecchHhhcccccCceEEE
Confidence 56899999999999999998876 478999999999999999999999653 334899999999999999999999
Q ss_pred EeCCC----CCcch--------------hhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 701 IYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 701 ~~d~~----wnp~~--------------~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
.++.+ |||.. ..||.||++|. ++-..|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 99875 56655 67888888886 5677889988653
No 99
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.2e-14 Score=156.59 Aligned_cols=341 Identities=18% Similarity=0.266 Sum_probs=212.5
Q ss_pred CceEEEcCCCCcHHHH-HHHHHHHHhcC-------------CCCc-eEEEecc-ccHHHHHHHHHHHc--CCCeEEEEec
Q 002937 305 THVILADEMGLGKTIQ-SIAFLASLFGE-------------RISP-HLVVAPL-STLRNWEREFATWA--PQMNVVMYVG 366 (864)
Q Consensus 305 ~~~ILade~GlGKTi~-ai~~i~~l~~~-------------~~~~-~LIV~P~-sll~qW~~E~~~~~--p~~~~~~~~g 366 (864)
...|=|.++|+|||+. +|-++..+.+. ++.| .|||+|. .+..|-.+.|.... +++.+..+.|
T Consensus 220 ~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G 299 (731)
T KOG0347|consen 220 VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG 299 (731)
T ss_pred hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeec
Confidence 5677799999999986 46666643321 1222 6999996 45578788877665 5788888898
Q ss_pred ChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh----cccccCCc-ceeEEEeccccccc
Q 002937 367 TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPI-KWQCMIVDEGHRLK 441 (864)
Q Consensus 367 ~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~----~~~~l~~~-~w~~vIvDEaH~lk 441 (864)
.-......|-. ....+|||.|+..+-. +...+..+ +..++|+||+.|+-
T Consensus 300 GLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 300 GLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMV 353 (731)
T ss_pred hhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHh
Confidence 87766544332 1257899999987732 22234333 45799999999984
Q ss_pred --CcccHHHHHHHhcc------cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 442 --NKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 442 --n~~s~~~~~l~~l~------~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
+.-..+.+.|..+. .+..+..|||--- ..+. .. . ...-........-+.+..+++
T Consensus 354 ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~---------~~~~---~~---~--~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 354 EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL---------VLQQ---PL---S--SSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhccHHHHHHHHHHhhhhhcccccceEEEEEEeeh---------hhcC---hh---H--HhhhccchhhhhhHHHHHHHH
Confidence 33345555555553 2245888998410 0000 00 0 000000000011111111211
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.+...-+| ..+++++.+.-. ..+.+-+--| .| +-. +.
T Consensus 417 ---------~ig~~~kp-----kiiD~t~q~~ta-----------------------~~l~Es~I~C-~~-~eK----D~ 453 (731)
T KOG0347|consen 417 ---------KIGFRGKP-----KIIDLTPQSATA-----------------------STLTESLIEC-PP-LEK----DL 453 (731)
T ss_pred ---------HhCccCCC-----eeEecCcchhHH-----------------------HHHHHHhhcC-Cc-ccc----ce
Confidence 11111122 234455433221 1122222222 11 000 00
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
. |--+| ..--.|.||||+.++.+.-|.-+|...+++..-++.+|.+.+|-+.+++|.+.
T Consensus 454 y------------------lyYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~ 512 (731)
T KOG0347|consen 454 Y------------------LYYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS 512 (731)
T ss_pred e------------------EEEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC
Confidence 0 00000 01134899999999999999999999999999999999999999999999886
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC------------------
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR------------------ 735 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~------------------ 735 (864)
.++ +|++|++++.|||++.+.+||+|..|-....|++|-||.-|-+..- |.|. |+..
T Consensus 513 ~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 513 PSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-LCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-EeChHHhHHHHHHHHHHhhccC
Confidence 665 8999999999999999999999999999999999999999976431 2221 1111
Q ss_pred ---CCHHHHHHHHHHHhhhHHHHHh
Q 002937 736 ---GSIEERMMQMTKKKMVLEHLVV 757 (864)
Q Consensus 736 ---~TiEe~i~~~~~~K~~l~~~v~ 757 (864)
--|++.++...+++-.|+..+.
T Consensus 588 lpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred CCceeccHHHHHHHHHHHHHHHHHH
Confidence 1357888888888888887775
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.2e-14 Score=166.15 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+.+......|..|||||.++...+.|...|...|+++..++|.....+++.+...++ .+ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ---RG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC---Cc--eEEEEec
Confidence 345888899999888889999999999999999999999999999999999987655555555443 23 2799999
Q ss_pred ccccCcCCC---CCC-----EEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 686 a~~~GinL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
.+|+|+|+. .+. +||.++.+-|...+.|+.||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 567 9999999999999999999999999876553
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.62 E-value=1.1e-13 Score=165.79 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=189.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccc-cHHHHHHHHHH----Hc
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS-TLRNWEREFAT----WA 356 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~s-ll~qW~~E~~~----~~ 356 (864)
+..++|+|..+.+-. ..++-.||-.+||.|||-.|+.++..+...+ .+.+++..|.- +..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999764321 3456679999999999999999888776543 45889999954 44555555543 44
Q ss_pred CCCeEEEEecChHHHHHHHHhhhc-CCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc-----ccC--Ccc
Q 002937 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLK--PIK 428 (864)
Q Consensus 357 p~~~~~~~~g~~~~r~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~-----~l~--~~~ 428 (864)
+..++...||............-. .........................-.+|+|+|.+.+....- .+. .+.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 556777888765432211110000 000000000000000111111122336899999988753211 111 122
Q ss_pred eeEEEecccccccCcccHH-HHHHHhcc--cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHH
Q 002937 429 WQCMIVDEGHRLKNKDSKL-FSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~-~~~l~~l~--~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 505 (864)
-.+|||||+|-+-.....+ ...+..+. ....++||||+-..-..+|......-.+ ..
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~--~~------------------ 499 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP--VE------------------ 499 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc--cc------------------
Confidence 3589999999884332222 23333322 3457999999732111111111000000 00
Q ss_pred HHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc
Q 002937 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (864)
Q Consensus 506 ~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l 585 (864)
.....|-... + +.... . .+ .+..|+..
T Consensus 500 ------------------~~~~YPlvt~----~--~~~~~-------------------~---------~~-~~~~~~~~ 526 (878)
T PRK09694 500 ------------------LSSAYPLITW----R--GVNGA-------------------Q---------RF-DLSAHPEQ 526 (878)
T ss_pred ------------------cccccccccc----c--ccccc-------------------e---------ee-eccccccc
Confidence 0000000000 0 00000 0 00 00000000
Q ss_pred cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCC---CcEEEEeccCCHHH
Q 002937 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (864)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~~ 662 (864)
.... .... .. . ..+-.......++..+++. ...|+++|||++.+..+..+.+.|...+ .++..++|.++..+
T Consensus 527 ~~~~-~~v~-v~-~-~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPAR-FTIQ-LE-P-ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCcc-eEEE-EE-e-eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0000 0000 00 0 0000001112233334333 3468899999999999999999998764 67999999999999
Q ss_pred H----HHHHHHhcCCCC-CceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCC
Q 002937 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (864)
Q Consensus 663 R----~~~i~~Fn~~~~-~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~ 724 (864)
| +++++.|..... ....+|++|.+...|||+ .+|.+|....| ...++||+||+||.|..
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 467888843222 213479999999999999 57988886655 56899999999999874
No 102
>PRK14701 reverse gyrase; Provisional
Probab=99.61 E-value=7.8e-14 Score=176.56 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCceEEEEeccHHH---HHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc----
Q 002937 613 LDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR---- 685 (864)
Q Consensus 613 l~~ll~~l~~~g~kvlIFsq~~~~---ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~---- 685 (864)
|.+++..+ |...|||++.... ++.|.++|...|+++..++|. |.+++++|.++... +|++|.
T Consensus 322 L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~g 390 (1638)
T PRK14701 322 VRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYG 390 (1638)
T ss_pred HHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCC
Confidence 44455443 6789999987654 589999999999999999984 89999999886655 788884
Q ss_pred ccccCcCCCC-CCEEEEeCCCC---CcchhhH-------------HHHHHHHhCCC
Q 002937 686 AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 724 (864)
Q Consensus 686 a~~~GinL~~-a~~VI~~d~~w---np~~~~Q-------------a~gR~~RiGQ~ 724 (864)
.++.|||++. +..|||||.|- |...+.| .+||++|-|..
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 6889999997 99999999987 5554444 45999998854
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=1.3e-13 Score=161.85 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+.+.++...|..|||||..+...+.|...|...|+++..++|. ..+|+..|..|..... .++|+|+
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecc
Confidence 3568999999998888899999999999999999999999999999999995 6789999999965443 4899999
Q ss_pred ccccCcCCCC--------------------------------------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLAT--------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~~--------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|+.- .=+||.-..+-|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999763 23788888899999999999999999987665
Q ss_pred EEE
Q 002937 728 MIF 730 (864)
Q Consensus 728 ~Vy 730 (864)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 543
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=3.2e-13 Score=160.25 Aligned_cols=308 Identities=17% Similarity=0.223 Sum_probs=208.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHH-HHHHHHHHcCCCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAPQMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~q-W~~E~~~~~p~~~ 360 (864)
.+-.|-|+.+++-...-..+++ .=+||-++|.|||=.|+-.+-.....+ +-+.|+||+.++.+ -.+.|..-+.++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 4677899999988866555544 458999999999987754433322232 58899999999854 4455654444554
Q ss_pred EEE-----EecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEec
Q 002937 361 VVM-----YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (864)
Q Consensus 361 ~~~-----~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvD 435 (864)
+-+ |.+.+..+..+... ...+.||+|-|+..+.++..+- +-.++|||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 433 33444444433332 2357899999999998766543 23589999
Q ss_pred ccccccCcccHHHHHHHhcccc-cEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 436 EaH~lkn~~s~~~~~l~~l~~~-~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
|=||+.-. .-..++.+++. +.|-|||||++-++.==. .
T Consensus 724 EEqRFGVk---~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm-----~--------------------------------- 762 (1139)
T COG1197 724 EEQRFGVK---HKEKLKELRANVDVLTLSATPIPRTLNMSL-----S--------------------------------- 762 (1139)
T ss_pred chhhcCcc---HHHHHHHHhccCcEEEeeCCCCcchHHHHH-----h---------------------------------
Confidence 99998643 33556667654 789999999876632100 0
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
-.++-....-||.....|.--..+..-...+.
T Consensus 763 ----GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ire-------------------------------------------- 794 (1139)
T COG1197 763 ----GIRDLSVIATPPEDRLPVKTFVSEYDDLLIRE-------------------------------------------- 794 (1139)
T ss_pred ----cchhhhhccCCCCCCcceEEEEecCChHHHHH--------------------------------------------
Confidence 00110111346665555543333221111111
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--CCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
.+++++ .+|.+|....+.+..+.-+...|+.. ..++...+|.|+..+-++++..|.+
T Consensus 795 --------------------AI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 795 --------------------AILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred --------------------HHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 122333 34667777778888888888888653 5578889999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCC-CCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+.-+ +|+||.....|||+++|||+|+-+.| +--++.-|-.||++|- .+..+-|.++..
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~ 912 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPP 912 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecC
Confidence 6554 89999999999999999999999887 6888899999999994 445667777664
No 105
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.58 E-value=9.4e-14 Score=166.94 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=91.0
Q ss_pred cCceEEEEeccHHHHHHHHHHHhh---CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V 699 (864)
.+..+|||......++.+.+.|.. .++.+..++|+++..+|+++++.|.+ +...+|++|+.+..||+++++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 356899999999999999999986 57889999999999999999988854 344589999999999999999999
Q ss_pred EEeCCC----CCcc--------------hhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 700 I~~d~~----wnp~--------------~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
|.++.. |+|. ...||.||++|. .+-..|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 997654 3333 467877777775 57888999986544
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.7e-13 Score=160.37 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+.+.|..|||||.++...+.|..+|...|+++..+++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888888889999999999999999999999999999999999999999999999999999997643 799999
Q ss_pred ccccCcCCC-C------------------------------------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 686 AGGLGINLA-T------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 686 a~~~GinL~-~------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
.+|.|+|+. + .=+||.-...-|-..+.|..||++|.|..-.-.
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999976 2 237898999999999999999999999875544
Q ss_pred E
Q 002937 729 I 729 (864)
Q Consensus 729 V 729 (864)
.
T Consensus 586 f 586 (908)
T PRK13107 586 F 586 (908)
T ss_pred E
Confidence 3
No 107
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.57 E-value=1.7e-13 Score=159.52 Aligned_cols=314 Identities=19% Similarity=0.275 Sum_probs=204.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcC-----CCCc-eEEEeccccH-HH---HHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE-----RISP-HLVVAPLSTL-RN---WEREF 352 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~-----~~~~-~LIV~P~sll-~q---W~~E~ 352 (864)
...+|-|..|+-.+ ..|+.+|-...+|+|||+.- +-.+.+.... +.|| .||+||.--+ .| |.+-|
T Consensus 386 ~k~~~IQ~qAiP~I----msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAI----MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchh----ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 46888999887655 78999999999999999876 3334443322 3356 4999996444 45 44444
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh----cccccCC-c
Q 002937 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKP-I 427 (864)
Q Consensus 353 ~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~----~~~~l~~-~ 427 (864)
.+.. ++.++..+|.......+.+. .....|+|+|...+.. ....+.. .
T Consensus 462 ~k~l-~ir~v~vygg~~~~~qiael--------------------------kRg~eIvV~tpGRmiD~l~~n~grvtnlr 514 (997)
T KOG0334|consen 462 LKLL-GIRVVCVYGGSGISQQIAEL--------------------------KRGAEIVVCTPGRMIDILCANSGRVTNLR 514 (997)
T ss_pred Hhhc-CceEEEecCCccHHHHHHHH--------------------------hcCCceEEeccchhhhhHhhcCCcccccc
Confidence 4443 56666655554444444332 1236788888776532 2222222 2
Q ss_pred ceeEEEeccccccc--CcccHHHHHHHhcccc-cEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHH
Q 002937 428 KWQCMIVDEGHRLK--NKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (864)
Q Consensus 428 ~w~~vIvDEaH~lk--n~~s~~~~~l~~l~~~-~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~ 504 (864)
+..++|+|||.++- ....+.+..+..+... ..++.|||-
T Consensus 515 R~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatf-------------------------------------- 556 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATF-------------------------------------- 556 (997)
T ss_pred ccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhh--------------------------------------
Confidence 45689999999973 2333444455554322 223334441
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~ 584 (864)
|-++..+...++. +|.. .+| . ++..+.+
T Consensus 557 ---------pr~m~~la~~vl~--~Pve-iiv--~--------~~svV~k------------------------------ 584 (997)
T KOG0334|consen 557 ---------PRSMEALARKVLK--KPVE-IIV--G--------GRSVVCK------------------------------ 584 (997)
T ss_pred ---------hHHHHHHHHHhhc--CCee-EEE--c--------cceeEec------------------------------
Confidence 0112222223332 3332 111 1 0000000
Q ss_pred ccCCCCCCccCchHHHHHhhh-cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHH
Q 002937 585 MLEGVEPDIEDTNESFKQLLE-SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (864)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~-~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R 663 (864)
...... .... .+.|+..|.++|....+ ..++|||++....+|.|.+-|...||....++|..+..+|
T Consensus 585 ---~V~q~v--------~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 585 ---EVTQVV--------RVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDR 652 (997)
T ss_pred ---cceEEE--------EEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHH
Confidence 000000 0001 35688888888888776 5599999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
...|..|.++.. .+|++|...+.|++......||+||.+--...+..|.||.+|.|.+. .-|.|++.
T Consensus 653 ~sti~dfK~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 653 SSTIEDFKNGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred HhHHHHHhccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999976544 48999999999999999999999999887788888888888888776 44556665
No 108
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=5.8e-14 Score=153.87 Aligned_cols=116 Identities=23% Similarity=0.330 Sum_probs=101.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHH-hhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeec
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (864)
..+|+..+.+++.... .-.+|||.|.......|-..| ...++.+..|+|..++.+|.+.+++|..+ .+-+|++|
T Consensus 371 e~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g---~IwvLicT 445 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG---KIWVLICT 445 (593)
T ss_pred chhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc---CeeEEEeh
Confidence 3567777777776643 348999999999999999999 78899999999999999999999999764 34489999
Q ss_pred cccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCc
Q 002937 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (864)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~ 726 (864)
...+.||++.+++.||+||.+-.-..++.++||.+|-|+...
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 999999999999999999999999999999999999998744
No 109
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=5.6e-15 Score=125.83 Aligned_cols=78 Identities=35% Similarity=0.579 Sum_probs=73.7
Q ss_pred HHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 642 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
.+|+..|+++..++|.++..+|+.+++.|+.+... +|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36888999999999999999999999999987663 799999999999999999999999999999999999999998
Q ss_pred C
Q 002937 722 G 722 (864)
Q Consensus 722 G 722 (864)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 110
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.53 E-value=2.3e-13 Score=143.47 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc-
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 685 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~- 685 (864)
..|+.++.-|++--.- ..|.|||.+..+..--|.-+|+.-|++.+.+.|.++...|.-+|++||.+- +.++|+|+
T Consensus 252 ~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccC
Confidence 3466666666653332 349999999999999999999999999999999999999999999998743 33677776
Q ss_pred -------------------------c---------cccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 686 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 686 -------------------------a---------~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
+ .+.|||++.++.||+||.|-++..|++|+||..|-|.+-.+.-
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 1 2579999999999999999999999999999999887665543
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=5.6e-12 Score=148.36 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=111.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
..+++..|.+-|....+.|.++|||+.....++.|.++|...|+++..++|.++..+|.++++.|..+ .+.+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G---~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG---EFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC---CceEEEEcC
Confidence 35677777788887788899999999999999999999999999999999999999999999999654 345899999
Q ss_pred ccccCcCCCCCCEEEEeCC-----CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCC--HHHHHHHH
Q 002937 686 AGGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQM 745 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T--iEe~i~~~ 745 (864)
.+++|++++.++.||++|. +-+...++|++||++|... -.++.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~---G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC---CEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999994 5578899999999999732 23555555544 44444443
No 112
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.3e-13 Score=144.08 Aligned_cols=312 Identities=18% Similarity=0.240 Sum_probs=204.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEeccccHHHHHHH-HHHHcCCC--
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWERE-FATWAPQM-- 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--~~~~LIV~P~sll~qW~~E-~~~~~p~~-- 359 (864)
++..-|..|+--+ .+|.+++.-...|+|||.+-...+....... ..-+||++|...+.+-..+ ...++...
T Consensus 48 kPSaIQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 4555777776433 6789999999999999988443333333222 2267999998888654333 44455443
Q ss_pred eEEEEecChHHH-HHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh--cccccCCcceeEEEecc
Q 002937 360 NVVMYVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDE 436 (864)
Q Consensus 360 ~~~~~~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~--~~~~l~~~~w~~vIvDE 436 (864)
++....|...-+ +.. .-.....+|++.|+..+.. +...|..-...+.|+||
T Consensus 124 ~v~~~igg~~~~~~~~--------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQ--------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred eeeeecCcccchhhhh--------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 444344433222 110 0112357899999976633 23355566678999999
Q ss_pred cccccC--cccHHHHHHHhcccc-cEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn--~~s~~~~~l~~l~~~-~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
|..+.. ..-+.+..+..+..+ ..+++|||-- .|+.
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p----~~vl-------------------------------------- 215 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP----SDVL-------------------------------------- 215 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccCc----HHHH--------------------------------------
Confidence 998764 445666667777544 5588899841 1110
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
+-+++ .+.. ...+.+.-...+.+.. ++ .|..
T Consensus 216 ----~vt~~-----f~~~-pv~i~vkk~~ltl~gi----------------------------kq----~~i~------- 246 (397)
T KOG0327|consen 216 ----EVTKK-----FMRE-PVRILVKKDELTLEGI----------------------------KQ----FYIN------- 246 (397)
T ss_pred ----HHHHH-----hccC-ceEEEecchhhhhhhe----------------------------ee----eeee-------
Confidence 00110 0000 1111111111000000 00 0000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
+....|+..|..+.+ +-...+||++...-++.|.+.|..+|+....++|.+...+|..++..|+.+
T Consensus 247 ----------v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 247 ----------VEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred ----------ccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 001127777777776 334789999999999999999999999999999999999999999999887
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.+. +|++|...+.||+++.++.||+||.|-|..+|+.++||++|.|-+- ....++++.
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 665 7999999999999999999999999999999999999999999653 334566554
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.49 E-value=4.5e-13 Score=160.12 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=215.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecc-ccHHHHHHHHHHHcCCCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~ 361 (864)
...||-|+++|+.. ..|+.+++-..+|.||++.- .+-.. ..+-+|||.|+ ||+......+.. .++..
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCY-----QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCY-----QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEe-----eccccccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 47899999999744 67899999999999999642 11111 13478999994 666544444422 35666
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccccc---CC----cceeEEEe
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL---KP----IKWQCMIV 434 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l---~~----~~w~~vIv 434 (864)
..+.+..........+... .......+++..|+|.+......+ .. -...++||
T Consensus 332 ~~L~s~q~~~~~~~i~q~l--------------------~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKL--------------------ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred eeccccccHHHHHHHHHHH--------------------hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 6777666554332222110 112246789999999996543322 11 12578999
Q ss_pred cccccccC-------cccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHH
Q 002937 435 DEGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (864)
Q Consensus 435 DEaH~lkn-------~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~ 507 (864)
||||.... ...++......+.....+.||||--..--.|+...|++-+|..+.+.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------ 453 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------ 453 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------------------
Confidence 99998754 23333333444445567999999766666666666666666543221
Q ss_pred HHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
..++.-.+.|....+ ...+..++...+
T Consensus 454 -------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~---------- 480 (941)
T KOG0351|consen 454 -------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESK---------- 480 (941)
T ss_pred -------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhh----------
Confidence 123333344433332 001111111111
Q ss_pred CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHH
Q 002937 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (864)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i 667 (864)
....+.-.||||....+.+.+...|...|++...++++++..+|+.+.
T Consensus 481 --------------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 481 --------------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred --------------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 122466899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEE
Q 002937 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (864)
Q Consensus 668 ~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 733 (864)
..|..+. +.++++|=|.|.|||-+++..||+|..|-+..-|-|..|||+|-|+...+..|+=.
T Consensus 529 ~~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 529 KAWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 9998765 44899999999999999999999999999999999999999999999887765533
No 114
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.49 E-value=2.9e-13 Score=136.94 Aligned_cols=155 Identities=27% Similarity=0.352 Sum_probs=109.1
Q ss_pred CCCchHHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-cccHHHHHHHHHHHcCCC-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM- 359 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~-~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P-~sll~qW~~E~~~~~p~~- 359 (864)
.+++++|.+++..+. .. .++++..++|+|||.+++.++....... ..++||++| ..+..||..++..+.+..
T Consensus 7 ~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 579999999998773 44 8999999999999998777766665543 568999999 567789999999988652
Q ss_pred --eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEec
Q 002937 360 --NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVD 435 (864)
Q Consensus 360 --~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvD 435 (864)
....+.+.... ..+... .....+++++|++.+...... +...+++++|+|
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiD 136 (201)
T smart00487 83 LKVVGLYGGDSKR-EQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILD 136 (201)
T ss_pred eEEEEEeCCcchH-HHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEE
Confidence 23334443322 111111 011238999999988765444 445578899999
Q ss_pred ccccccC-cccHHH-HHHHhc-ccccEEEeecCCCC
Q 002937 436 EGHRLKN-KDSKLF-SSLKQY-STRHRVLLTGTPLQ 468 (864)
Q Consensus 436 EaH~lkn-~~s~~~-~~l~~l-~~~~rllLTgTP~~ 468 (864)
|+|.+.+ ...... ..+..+ ...+++++||||..
T Consensus 137 E~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 137 EAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred CHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 9999985 333333 333444 46788999999953
No 115
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.47 E-value=2.5e-12 Score=148.63 Aligned_cols=309 Identities=18% Similarity=0.256 Sum_probs=178.7
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEeccccH-H----HHHHHHHHHcCCCeEEEEe
Q 002937 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTL-R----NWEREFATWAPQMNVVMYV 365 (864)
Q Consensus 300 ~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~---------~~~~~LIV~P~sll-~----qW~~E~~~~~p~~~~~~~~ 365 (864)
.+..+.|.|++.+||+|||..|...|..+.++ ..-+++.|+|...+ . +|..-|.-| ++.+..++
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELT 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELT 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEec
Confidence 45789999999999999999886655555442 12289999995444 3 344444333 68888999
Q ss_pred cChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh-------cccccCCcceeEEEecccc
Q 002937 366 GTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 366 g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~-------~~~~l~~~~w~~vIvDEaH 438 (864)
|+...-+. +....+|+|||+|...- +...+. ...+|||||.|
T Consensus 200 GD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVH 248 (1230)
T KOG0952|consen 200 GDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVH 248 (1230)
T ss_pred CcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeeh
Confidence 98754321 13467899999987621 111111 35699999999
Q ss_pred cccCcccHHH-----HHHHhc----ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHH
Q 002937 439 RLKNKDSKLF-----SSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (864)
Q Consensus 439 ~lkn~~s~~~-----~~l~~l----~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~ 509 (864)
-|....+... +.++.. +.-+.++||||- -|+.|+. .||........-.|...|...
T Consensus 249 lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yRPv---------- 313 (1230)
T KOG0952|consen 249 LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYRPV---------- 313 (1230)
T ss_pred hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccccc----------
Confidence 9976554222 222211 233568999994 2444443 344443333333333333210
Q ss_pred HHHhHHHHHHHHhhHhhcCCCcEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls--~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
|.....+-..-. ..|.+..
T Consensus 314 --------------------pL~~~~iG~k~~~~~~~~~~~--------------------------------------- 334 (1230)
T KOG0952|consen 314 --------------------PLTQGFIGIKGKKNRQQKKNI--------------------------------------- 334 (1230)
T ss_pred --------------------ceeeeEEeeecccchhhhhhH---------------------------------------
Confidence 011111111110 0011000
Q ss_pred CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHH----HHHHHHHHhhCCCc-------------
Q 002937 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM----LDLLEDYLTFKKWQ------------- 650 (864)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~----ld~L~~~L~~~g~~------------- 650 (864)
..+++..+.++ ..+|+.|+||+..... +..|.+.-...|..
T Consensus 335 ------------------d~~~~~kv~e~----~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~ 392 (1230)
T KOG0952|consen 335 ------------------DEVCYDKVVEF----LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLK 392 (1230)
T ss_pred ------------------HHHHHHHHHHH----HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHH
Confidence 11122222222 3468999999887543 33332222222222
Q ss_pred ------EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcch----------hhHH
Q 002937 651 ------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQA 714 (864)
Q Consensus 651 ------~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~----------~~Qa 714 (864)
...-+.++...+|+..-+.|..+.- -+|++|...+-|+||++--.+|-=..-|++.. .+|.
T Consensus 393 elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i---~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQi 469 (1230)
T KOG0952|consen 393 ELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI---KVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQI 469 (1230)
T ss_pred HHHHhhhhhcccccchhhHHHHHHHHhcCCc---eEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHH
Confidence 2334556777888888888976544 37999999999999997666665455555554 6899
Q ss_pred HHHHHHhCCCCcEEEEEEEeCCCHHH
Q 002937 715 MARAHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 715 ~gR~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
+|||+|.+=.+.-..+-+.+.++++-
T Consensus 470 fGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 470 FGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HhccCCCCCCCCceEEEEecccHHHH
Confidence 99999976555555555555555443
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1.1e-11 Score=145.84 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..|.+.+..+...|..|||||+++...+.|..+|...|+++..+++ ...+|++.|..|..... .++|+|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEecc
Confidence 346899999999998889999999999999999999999999999999997 57799999999965433 4899999
Q ss_pred ccccCcCCCCCC--------EEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|+.-.+ +||.++.+-+...+.|++||++|.|..-..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999998433 348888999999999999999999987554
No 117
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=7.9e-13 Score=125.68 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=98.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEeccccHH-HHHHHHHHHcC-CCeEEEEecChHHHHHHHHhhhcC
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P~sll~-qW~~E~~~~~p-~~~~~~~~g~~~~r~~i~~~e~~~ 381 (864)
+++++..++|+|||.+++.++..+... ..++++|++|...+. +|...+..+.. ...+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999888765 456999999977665 55666777774 4666666665544332211
Q ss_pred CCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccccc--CCcceeEEEecccccccCcccHHH---HHHHhccc
Q 002937 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (864)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l--~~~~w~~vIvDEaH~lkn~~s~~~---~~l~~l~~ 456 (864)
.....+++++|++.+....... ....++++|+||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999886644332 344789999999999988765543 33444567
Q ss_pred ccEEEeecCC
Q 002937 457 RHRVLLTGTP 466 (864)
Q Consensus 457 ~~rllLTgTP 466 (864)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7889999998
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.43 E-value=9.8e-11 Score=139.02 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
.+++..|...|......|.++|||+.....++.|.+.|...|+++..++|.++..+|..+++.|..+. +.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~---i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE---FDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC---ceEEEEeCH
Confidence 45677788888888888999999999999999999999999999999999999999999999997543 457999999
Q ss_pred cccCcCCCCCCEEEEeCCC-----CCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~-----wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+++|++++.+++||++|.+ -++..++|++||++|- . .-.++.|+..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999973 5888999999999994 2 3345566654
No 119
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=9.4e-13 Score=138.25 Aligned_cols=311 Identities=17% Similarity=0.223 Sum_probs=207.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC-CC-ceEEEeccccH-HHH---HHHHHHHcC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-IS-PHLVVAPLSTL-RNW---EREFATWAP 357 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~-~~-~~LIV~P~sll-~qW---~~E~~~~~p 357 (864)
+..|.|+..++-+ -.+...+-..=+|+|||..- |-.+..|.... .+ +.||+.|..-+ .|- ..++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 5677787777654 45566666667999999764 44455554433 22 89999997555 443 34444444
Q ss_pred CCeEE-EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEe
Q 002937 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (864)
Q Consensus 358 ~~~~~-~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIv 434 (864)
++... .+.|+......+.- ....||++.|+..+..... .|......+||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 45555 44445444332211 1357899999887754222 133334678999
Q ss_pred ccccccc--CcccHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 002937 435 DEGHRLK--NKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (864)
Q Consensus 435 DEaH~lk--n~~s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~ 511 (864)
||+.++- ....++.+.+..++. ...+++|||- .+.+. +|..
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv------------------~fak----------------- 214 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLV------------------DFAK----------------- 214 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhH------------------HHHH-----------------
Confidence 9999984 356788888888864 4679999994 11111 1100
Q ss_pred HhHHHHHHHHhhHhhcCCCcEEE-EEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCC
Q 002937 512 LAPHLLRRVKKDVMKELPPKKEL-ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~-~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~ 590 (864)
+. -.||.... .|.-.+++.
T Consensus 215 ----------aG---l~~p~lVRldvetkise~----------------------------------------------- 234 (529)
T KOG0337|consen 215 ----------AG---LVPPVLVRLDVETKISEL----------------------------------------------- 234 (529)
T ss_pred ----------cc---CCCCceEEeehhhhcchh-----------------------------------------------
Confidence 00 01222111 110111110
Q ss_pred CCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHh
Q 002937 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 670 (864)
.......+....|...|..++..... .++.+||+.-...++++...|...|+....+.|++....|..-+.+|
T Consensus 235 ------lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 235 ------LKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred ------hhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence 00011122345677777777766544 45899999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 671 n~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
+..... +|++|+.++.|++++-.+.||.||.+-.+..+..|.||+.|-|.+- ..|-+|+.
T Consensus 308 ~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~ 367 (529)
T KOG0337|consen 308 RGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAS 367 (529)
T ss_pred cCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEec
Confidence 765554 8999999999999999999999999999999999999999988653 33455543
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.42 E-value=6.9e-12 Score=154.21 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=87.0
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCC---CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V 699 (864)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+++++.+ .. + .+|++|+.+..||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-r-kIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-R-RIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-c-eEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885433 22 2 479999999999999999999
Q ss_pred EEeCCC----C--------------CcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 700 I~~d~~----w--------------np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
|.++.. | +-....||.||++|.| +-.+|+|+++...+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 987732 2 2247889999999987 66789999876443
No 121
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.42 E-value=2.5e-11 Score=148.83 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=86.6
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCc---EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V 699 (864)
....+|||+.....++.+.+.|...+++ +.-++|+++..+|+++++.+ +...+|++|+.++.||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999887765 56789999999999886542 233589999999999999999999
Q ss_pred EEeC---------------CCCCc---chhhHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 700 I~~d---------------~~wnp---~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
|.++ .+-.| ..+.||.||++|. .+-..|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9975 22233 4678888888886 466788999865443
No 122
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=4.8e-13 Score=114.72 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHH
Q 002937 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (864)
Q Consensus 639 ~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~ 718 (864)
.|.++|...++++..++|.++..+|+.+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred HHhC
Q 002937 719 HRLG 722 (864)
Q Consensus 719 ~RiG 722 (864)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=1e-10 Score=137.55 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=96.4
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... ..-.++|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457888888888888999999999999999999999999999999999988633 222344433 33334 4799999
Q ss_pred ccccCcCCCC--------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 686 AGGLGINLAT--------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 686 a~~~GinL~~--------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
.+|.|.|+.- .=+||.-..+-|...+.|..||++|.|..-....
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 9999988753 2378999999999999999999999998765443
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.38 E-value=2.5e-11 Score=146.09 Aligned_cols=354 Identities=16% Similarity=0.139 Sum_probs=203.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecc-ccHHHHHHHHHHHcCCC
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWAPQM 359 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~-sll~qW~~E~~~~~p~~ 359 (864)
...+++|..+++.....+..+.-++|..+||.|||..++..+.+..... ..+++.|.|. +++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999998877766655889999999999999988888777663 4588888885 45566777788777544
Q ss_pred eEEEE--ecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc------cccCCcceeE
Q 002937 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLKPIKWQC 431 (864)
Q Consensus 360 ~~~~~--~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~------~~l~~~~w~~ 431 (864)
.+..- +|.....-.. ..+. . . .............-+.+.+++...+.... ..+..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~~-~~~~----~-----~--~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLLL-EPDQ----D-----I--LLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhhh-cccc----c-----c--ceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 44433 4444332211 1000 0 0 00000000011122333333333332211 1122344568
Q ss_pred EEecccccccCc-ccHHHHHH-Hhcc--cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHH
Q 002937 432 MIVDEGHRLKNK-DSKLFSSL-KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (864)
Q Consensus 432 vIvDEaH~lkn~-~s~~~~~l-~~l~--~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~ 507 (864)
+|+||+|-+-.. ......++ ..+. ....+++|||+- ..|.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~-------------- 385 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLK-------------- 385 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHH--------------
Confidence 999999988655 22222222 2222 457799999971 1111
Q ss_pred HHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
+.|......... .. .+.. .++ .++.|.+..
T Consensus 386 --~~l~~~~~~~~~-~~---~~~~-----~~~---------------------------------------~~~e~~~~~ 415 (733)
T COG1203 386 --EKLKKALGKGRE-VV---ENAK-----FCP---------------------------------------KEDEPGLKR 415 (733)
T ss_pred --HHHHHHHhcccc-ee---cccc-----ccc---------------------------------------ccccccccc
Confidence 111111100000 00 0000 000 000000000
Q ss_pred CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHH
Q 002937 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (864)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i 667 (864)
....... ..+. ..+...+..-...|.+|+|-++.+..+.-+.+.|+..+.++..+++......|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 112223333345689999999999999999999998877899999999999999988
Q ss_pred HHhcCC--CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhC--CCCcEEEEEEEeCCCHHHHHH
Q 002937 668 DRFNAK--NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMM 743 (864)
Q Consensus 668 ~~Fn~~--~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiG--Q~~~V~Vy~lv~~~TiEe~i~ 743 (864)
+....- .... .++|+|.+...|+|+. .|.+|-==+| ....+||.||++|-| ....+.||...-......+.+
T Consensus 484 ~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 484 RELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred HHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 865531 1222 3799999999999998 6666542221 456899999999999 556777777777777776666
Q ss_pred HHHHHhhh
Q 002937 744 QMTKKKMV 751 (864)
Q Consensus 744 ~~~~~K~~ 751 (864)
+....++.
T Consensus 560 ~~~~~~~~ 567 (733)
T COG1203 560 EKLEKKLK 567 (733)
T ss_pred hcchhhhc
Confidence 65555443
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.1e-10 Score=134.00 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=97.6
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+.+.|..|||.+.++..-+.|...|...|++...+..... +.-.++|.+ ++..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCCCC--cEEEEec
Confidence 456888888888888999999999999999999999999999999999988744 333445543 23333 4799999
Q ss_pred ccccCcCCCC---------------CCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 686 AGGLGINLAT---------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 686 a~~~GinL~~---------------a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
.+|.|.|+.- .=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999988762 23788888999999999999999999987655543
No 126
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.36 E-value=2e-11 Score=129.61 Aligned_cols=216 Identities=25% Similarity=0.296 Sum_probs=132.8
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHHHh---cCCC------------cchHHHHHHHHHHHhCccccc-CCCCCCccC
Q 002937 532 KELILRVELSSKQKEYYKAILTRNYQILTR---RGGA------------QISLINVVMELRKLCCHPYML-EGVEPDIED 595 (864)
Q Consensus 532 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~---~~~~------------~~~~~~~~~~lrk~~~hp~l~-~~~~~~~~~ 595 (864)
.++.++++|+..|++.|+.++...+..+.+ .... ...+...+.+++.+|+||+|+ +...+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 367899999999999999999877665432 1111 123445677899999999986 333343334
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHH-----HHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHH---
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l-----~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i--- 667 (864)
..+....+...|+|+.+|.+++..+ ...+.+++|.++...++|+|+.+|...++.|.|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4455677788999999999999999 66788999999999999999999999999999999976554443332
Q ss_pred ---------HHhcCC-CCCceEEEeecccccc----CcCCCCCCEEEEeCCCCCcchhhHHHHHH-HHhCCCCcEEEEEE
Q 002937 668 ---------DRFNAK-NSSRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRL 732 (864)
Q Consensus 668 ---------~~Fn~~-~~~~~v~Llst~a~~~----GinL~~a~~VI~~d~~wnp~~~~Qa~gR~-~RiGQ~~~V~Vy~l 732 (864)
...... .....++|+++.-... .++-...|.||-||+.+++....-..-|. +|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 111111 2233445665554433 13334679999999999998865444444 4433 88999999
Q ss_pred EeCCCHHHHHHHHHHHh
Q 002937 733 ITRGSIEERMMQMTKKK 749 (864)
Q Consensus 733 v~~~TiEe~i~~~~~~K 749 (864)
++.+|+|.-++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887766544
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.7e-09 Score=117.61 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=106.0
Q ss_pred HHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCC
Q 002937 617 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATA 696 (864)
Q Consensus 617 l~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a 696 (864)
+..-.+.|.|+||-+--..|.+-|.+||...|+++..++..+..-+|.++|...+.+. |.+|+....+-+||||+.+
T Consensus 439 I~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~---~DvLVGINLLREGLDiPEV 515 (663)
T COG0556 439 IRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE---FDVLVGINLLREGLDLPEV 515 (663)
T ss_pred HHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC---ccEEEeehhhhccCCCcce
Confidence 3344557899999999999999999999999999999999999999999999997654 4489999999999999999
Q ss_pred CEEEEeCCC-----CCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 002937 697 DTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 697 ~~VI~~d~~-----wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
+.|.|+|.| -+-...+|.+|||-|--.. .|..|-=...+++++.|-+..++
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 999999998 4788899999999995433 34444444455677777665443
No 128
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.33 E-value=1e-10 Score=123.08 Aligned_cols=321 Identities=15% Similarity=0.163 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEEEEec
Q 002937 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (864)
Q Consensus 288 ~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~~~~g 366 (864)
|-|..+++-+. ..+..+.+.+++|.||++.-- +-.|... +-++||.|+ .++....+.+.+.--.....--.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~--gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHG--GITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhC--CeEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 57888887653 667899999999999996420 1122223 367888884 555555666655421111000011
Q ss_pred ChHHHH-HHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc-----cccc-CCcceeEEEeccccc
Q 002937 367 TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-----SASL-KPIKWQCMIVDEGHR 439 (864)
Q Consensus 367 ~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~-----~~~l-~~~~w~~vIvDEaH~ 439 (864)
+..+|. ++-+. ........++.+|++....+ ...| ..-.-.+++|||||.
T Consensus 96 St~ER~ri~~DL-----------------------~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 96 STVERSRIMGDL-----------------------AKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred hHHHHHHHHHHH-----------------------HhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 122222 22222 12233455777888876443 1122 222457899999998
Q ss_pred ccCcc------cHHHHHHHh-cccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHH-HhccchHHHHHHHHHH
Q 002937 440 LKNKD------SKLFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRLHRM 511 (864)
Q Consensus 440 lkn~~------s~~~~~l~~-l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~-~~~~~~~~~~~~L~~~ 511 (864)
....+ -...-+|+. +..-..+.||||.-..--+|+|..|++-.|-..-.-..|... |.+.
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~------------ 220 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN------------ 220 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH------------
Confidence 74322 112222222 334456889999877778889999988776432111122111 1000
Q ss_pred HhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCC
Q 002937 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (864)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~ 591 (864)
.|+.+++..+..|. .-.+++...|--+....
T Consensus 221 -----------------------------------~~K~~I~D~~~~La-------------DF~~~~LG~~~~~~~~~- 251 (641)
T KOG0352|consen 221 -----------------------------------HMKSFITDCLTVLA-------------DFSSSNLGKHEKASQNK- 251 (641)
T ss_pred -----------------------------------HHHHHhhhHhHhHH-------------HHHHHhcCChhhhhcCC-
Confidence 01111111111110 00111111111000000
Q ss_pred CccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhc
Q 002937 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (864)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn 671 (864)
+....--||||...+..+.+.-.|...|++..-++.+....+|..+.+.+-
T Consensus 252 -----------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 252 -----------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred -----------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 001225699999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEE
Q 002937 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (864)
Q Consensus 672 ~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 731 (864)
+++.+ ++++|.+.|.|++-+++..||+.+++-|-+-|-|--||++|-|-..-+..|+
T Consensus 303 ~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 303 NNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 76665 7999999999999999999999999999999999999999999887777665
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.30 E-value=4e-11 Score=122.46 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=105.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcC---CCCceEEEec-cccHHHHHHHHHHHcC--
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE---RISPHLVVAP-LSTLRNWEREFATWAP-- 357 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~---~~~~~LIV~P-~sll~qW~~E~~~~~p-- 357 (864)
.++++|.++++.+ .++++.++..++|+|||++. +.++..+... ...++|||+| ..++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 34889999999999999884 4445555544 2347999999 4677889998888864
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEec
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvD 435 (864)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 56777788766554332221 125689999988764422 11222356899999
Q ss_pred ccccccCcc-c-HHHHHHHhcc-cccEEEeecCCC
Q 002937 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (864)
Q Consensus 436 EaH~lkn~~-s-~~~~~l~~l~-~~~rllLTgTP~ 467 (864)
|+|.+.+.. . .....+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 1 2222333444 456799999985
No 130
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.30 E-value=6.6e-11 Score=122.24 Aligned_cols=298 Identities=17% Similarity=0.154 Sum_probs=189.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
...||.|++++|-. ..+..++|...+|-||++.-- +-.|.. .|-.|||||. +++....-.++....+....
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 36899999999876 678899999999999996421 111222 3578999995 67766666677765443332
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc-------ccCCcceeEEEec
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCMIVD 435 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~-------~l~~~~w~~vIvD 435 (864)
--..++..-..... ...+....|..+..|++.+.+... .+....|.++-+|
T Consensus 165 nansske~~k~v~~----------------------~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRVEA----------------------AITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHHHH----------------------HHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 22222222221111 112234578889999998855332 3344468899999
Q ss_pred cccccc-------CcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 436 EGHRLK-------NKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 436 EaH~lk-------n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
|.|... ...+.+...-++++....++||||...+-+.|...+|..-..-. |..-|
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~t------f~a~f------------ 284 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFT------FRAGF------------ 284 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhe------eeccc------------
Confidence 998763 23333334445566778899999986665555444332100000 00000
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
.-|...+.++ -.++
T Consensus 285 ------------------nr~nl~yev~-qkp~----------------------------------------------- 298 (695)
T KOG0353|consen 285 ------------------NRPNLKYEVR-QKPG----------------------------------------------- 298 (695)
T ss_pred ------------------CCCCceeEee-eCCC-----------------------------------------------
Confidence 1122211111 1111
Q ss_pred CCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHH
Q 002937 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (864)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 668 (864)
..++- +.-+.+++..- -.|..-||||-+..-.+.+...|...|+....++..+.+.+|.-+-+
T Consensus 299 ------n~dd~----------~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 299 ------NEDDC----------IEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred ------ChHHH----------HHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 10100 01112222221 13778899999999999999999999999999999999999988887
Q ss_pred HhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHH
Q 002937 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (864)
Q Consensus 669 ~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~ 715 (864)
.+-+ +.+-+++.|-|.|.||+-+.+..||+-..+-+..++-||-
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHH
Confidence 7754 3445899999999999999999999999999999999943
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=3.2e-10 Score=133.33 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+.+.|..|||-+.++..-+.|..+|...|+++..+..... ..-.++|. +++..+ .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEecc
Confidence 467999999999999999999999999999999999999999999988877643 33344444 344444 4699999
Q ss_pred ccccCcCCC-------------------------------------CCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEE
Q 002937 686 AGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 686 a~~~GinL~-------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
.+|.|.|+. +.=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998874 2347898999999999999999999999876555
Q ss_pred EE
Q 002937 729 IF 730 (864)
Q Consensus 729 Vy 730 (864)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 43
No 132
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.27 E-value=3.7e-11 Score=118.66 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcCCCCceEEEecc-ccHHHHHHHHHHHcC--CCeEEE
Q 002937 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (864)
Q Consensus 288 ~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~-l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~~~~ 363 (864)
|+|.+++.-+ .++++.++..++|+|||..++..+.. +.+...+.+||++|. +++.|-.+++..++. +.++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998877 36788999999999999998755554 444433599999994 677888888988885 367777
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEeccccccc
Q 002937 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (864)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~lk 441 (864)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 77755422111110 013578999999999764432 122347899999999997
Q ss_pred Cc--ccHHHHHHHhc---ccccEEEeecCCCCCCHh
Q 002937 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (864)
Q Consensus 442 n~--~s~~~~~l~~l---~~~~rllLTgTP~~n~~~ 472 (864)
.. .......+..+ .....+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22233333333 2356899999996 4443
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.25 E-value=2.1e-10 Score=134.52 Aligned_cols=71 Identities=30% Similarity=0.496 Sum_probs=59.2
Q ss_pred CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE-----eCCC---C---CcchhhHHHH
Q 002937 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (864)
Q Consensus 648 g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~-----~d~~---w---np~~~~Qa~g 716 (864)
.+.+..-+.+++..+|+..-+.|.++. +-+|+||...+-|+||++ ++||+ |||. | +|....|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~---iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGH---IQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCc---eeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 356888899999999999999996643 448999999999999985 66766 6664 4 6889999999
Q ss_pred HHHHhC
Q 002937 717 RAHRLG 722 (864)
Q Consensus 717 R~~RiG 722 (864)
|++|.+
T Consensus 683 ragrp~ 688 (1674)
T KOG0951|consen 683 RAGRPQ 688 (1674)
T ss_pred hcCCCc
Confidence 999976
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=4e-09 Score=122.85 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=98.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+.+.|..|||.|.++...+.|..+|...|++...++.... +.-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 457888888888888889999999999999999999999999999999988643 22233443 444444 4799999
Q ss_pred ccccCcCCCCCC--------EEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 686 a~~~GinL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
.+|.|.|+.-.. +||..+.+-|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987443 899999999999999999999999987655543
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.18 E-value=2.6e-10 Score=140.26 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHH-HHH---HHc
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER-EFA---TWA 356 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~-E~~---~~~ 356 (864)
.|.+.||.|.+.+..+...+.++..+++-..||+|||+..+.-+..... ...+++|.+|... ..|+.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999988877777788888899999999999987665544433 3459999999655 467644 544 333
Q ss_pred C-CCeEEEEecCh
Q 002937 357 P-QMNVVMYVGTS 368 (864)
Q Consensus 357 p-~~~~~~~~g~~ 368 (864)
+ ++++.+..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47777777654
No 136
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.13 E-value=8.9e-10 Score=114.58 Aligned_cols=234 Identities=18% Similarity=0.220 Sum_probs=143.1
Q ss_pred CCCCCCCchHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHH
Q 002937 280 FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREF 352 (864)
Q Consensus 280 ~~~~~~L~~yQ~~~v~~l~~~~~------~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~ 352 (864)
.+..+.|..-|+|+|.+...... .+.|.+|+|.+|.||.-|+.++|..-+..+..+.+.|.. ..+...-.+.+
T Consensus 32 ~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 32 VIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHH
Confidence 45668899999999988865544 467889999999999999988888776666555566655 56666677777
Q ss_pred HHHcCC-CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc-------ccc
Q 002937 353 ATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-------ASL 424 (864)
Q Consensus 353 ~~~~p~-~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~-------~~l 424 (864)
...... +.+..+.. + ........+..|+++||.++.... ..|
T Consensus 112 ~DIG~~~i~v~~l~~----------~--------------------~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 112 RDIGADNIPVHPLNK----------F--------------------KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred HHhCCCcccceechh----------h--------------------ccCcCCCCCCCccchhHHHHHhHHhccCCccchH
Confidence 765421 11111111 0 000112245679999999997653 222
Q ss_pred CCc-ce------eEEEecccccccCccc------HHHHHHHhc----ccccEEEeecCCCCCCHhHHH--hhhhhcCC-C
Q 002937 425 KPI-KW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELF--MLMHFLDA-G 484 (864)
Q Consensus 425 ~~~-~w------~~vIvDEaH~lkn~~s------~~~~~l~~l----~~~~rllLTgTP~~n~~~el~--~ll~~l~p-~ 484 (864)
.++ .| .+||+||||+.||..+ +...+...+ +..+.+..|||... .+..|- .-+.+-.+ .
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGLWG~gt 240 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGLWGPGT 240 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccccCCCC
Confidence 221 34 3899999999999654 555555444 44567999999863 222221 11111111 2
Q ss_pred CCCChHHHHHHHhccchHHHHHHHHHHHh--HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHH
Q 002937 485 KFGSLEEFQEEFKDINQEEQISRLHRMLA--PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (864)
Q Consensus 485 ~~~~~~~f~~~~~~~~~~~~~~~L~~~l~--~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~ 550 (864)
.|.+..+|.+....-. ....+-+...++ ..+++|.. .+-.....++.++|++.|.+.|+.
T Consensus 241 pf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 241 PFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred CCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 4667788877665421 111222211111 22333332 345567788999999999999974
No 137
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.01 E-value=3.3e-09 Score=121.94 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=102.3
Q ss_pred ccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH-HHH
Q 002937 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWE 349 (864)
Q Consensus 271 ~~~~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~-qW~ 349 (864)
|.++-..|...-+-+|-.+|++|+--| ..|..+++|.-|..|||+.|=..++.. .....+++...|-..+. |=-
T Consensus 283 f~~lVpe~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 283 FYQLVPEMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HHHhchhHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchH
Confidence 333333343444568999999998666 789999999999999999974444322 22234788899966664 556
Q ss_pred HHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc----ccccC
Q 002937 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLK 425 (864)
Q Consensus 350 ~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----~~~l~ 425 (864)
++|+.-+.+.. ..+|+... .+....+|+|-+.+++. ...++
T Consensus 358 RDFk~tF~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 358 RDFKETFGDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHHhccccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhh
Confidence 77877665554 55665432 24567999999988753 34444
Q ss_pred CcceeEEEecccccccCcc-cHHHHHHHhccccc--EEEeecCC
Q 002937 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 466 (864)
Q Consensus 426 ~~~w~~vIvDEaH~lkn~~-s~~~~~l~~l~~~~--rllLTgTP 466 (864)
.+. .||+||+|++-+.. +-.+..+.-+-.+| .++||||-
T Consensus 403 DvE--~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 403 DVE--FVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred ccc--eEEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 444 59999999996533 33344443333343 48999994
No 138
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.00 E-value=5.7e-08 Score=113.38 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=88.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcC-----C
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP-----Q 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p-----~ 358 (864)
.+...|+- |..... .|.+.-+..+||+|||.-.+....++...+ ++.+||+|+.++ .|-.+-++++.+ .
T Consensus 82 ~~ws~QR~---WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 82 RPWSAQRV---WAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred CchHHHHH---HHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 45667776 554443 455544444999999987666555554444 799999997555 777778888873 3
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
..++ ||+.-..++.-...+ .-...+|||+|||-+.+.+....|.+.+||+|++|.+.
T Consensus 157 ~~~~-yh~~l~~~ekee~le----------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVD 213 (1187)
T COG1110 157 VLVV-YHSALPTKEKEEALE----------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVD 213 (1187)
T ss_pred eeee-eccccchHHHHHHHH----------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHH
Confidence 3344 888633332111110 01235799999999999999999999999999999998
Q ss_pred cc
Q 002937 439 RL 440 (864)
Q Consensus 439 ~l 440 (864)
.+
T Consensus 214 A~ 215 (1187)
T COG1110 214 AI 215 (1187)
T ss_pred HH
Confidence 65
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.99 E-value=6.9e-08 Score=113.50 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=67.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCC-HHHHHHHHHHhcCCCCCceEEEeec
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 684 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~-~~~R~~~i~~Fn~~~~~~~v~Llst 684 (864)
...|...+.+-+....+.|..|||-+.++..-+.|...|...|+++..+..... .+.-.++|.. ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 345888888888888889999999999999999999999999999999998743 3444556654 33334 469999
Q ss_pred cccccCcCCC
Q 002937 685 RAGGLGINLA 694 (864)
Q Consensus 685 ~a~~~GinL~ 694 (864)
..+|+|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997753
No 140
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.90 E-value=5.3e-08 Score=116.63 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=97.4
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCC-
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~- 359 (864)
-+.+|-|+|.+++.-| ..+.+++++..||.|||+.+-.+++.-...+. ++....|. ++-.|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4578999999998766 88999999999999999999777765555443 48999994 55566667765544322
Q ss_pred -eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc----ccccCCcceeEEEe
Q 002937 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (864)
Q Consensus 360 -~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----~~~l~~~~w~~vIv 434 (864)
-+-+++|+.. -..+..++++|-+.++.. ...+..+ ..||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i--~~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDI--EWVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCccccccc--ceEEE
Confidence 1233444321 124566888887888652 2334444 45999
Q ss_pred cccccccCccc-HHHHH-HHhcccc-cEEEeecCC
Q 002937 435 DEGHRLKNKDS-KLFSS-LKQYSTR-HRVLLTGTP 466 (864)
Q Consensus 435 DEaH~lkn~~s-~~~~~-l~~l~~~-~rllLTgTP 466 (864)
||.|.+..... -.+.. +..+... ..++||||-
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 99999976433 33333 3334433 679999994
No 141
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.90 E-value=3.1e-10 Score=111.91 Aligned_cols=53 Identities=45% Similarity=1.032 Sum_probs=46.5
Q ss_pred cccccccccccccCCc---eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 47 IDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
.--.+.+|.+|+.+++ ||+||.|+++|||+||.||+..+|+|.|.|..|....
T Consensus 277 qcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 277 QCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred eeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 3446788999997654 9999999999999999999999999999999998643
No 142
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.88 E-value=5.1e-08 Score=96.41 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=79.3
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCC-CceEEEeccccH-HHHHHHHHH---HcCCC
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPLSTL-RNWEREFAT---WAPQM 359 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~-ai~~i~~l~~~~~-~~~LIV~P~sll-~qW~~E~~~---~~p~~ 359 (864)
...-|.+.+-.. --|..++.....|.|||.. +++.+..+-.... -.+||+|...-+ .|-..|+.+ +.|+.
T Consensus 65 psevqhecipqa----ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~v 140 (387)
T KOG0329|consen 65 PSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSV 140 (387)
T ss_pred chHhhhhhhhHH----hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCc
Confidence 445677766433 2356677778899999965 4555554422221 167999986444 677777655 56999
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEeccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEa 437 (864)
++.+|.|.-......... ..-++|++.|+..+... ...|..-.....|+||+
T Consensus 141 kvaVFfGG~~Ikkdee~l--------------------------k~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 141 KVSVFFGGLFIKKDEELL--------------------------KNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred eEEEEEcceeccccHHHH--------------------------hCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 999999976543211110 12578999999987542 22333344567899999
Q ss_pred ccc
Q 002937 438 HRL 440 (864)
Q Consensus 438 H~l 440 (864)
..+
T Consensus 195 dkm 197 (387)
T KOG0329|consen 195 DKM 197 (387)
T ss_pred HHH
Confidence 865
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=1.9e-07 Score=109.61 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEecc-CCHHHHHHHHHHhcCCCCCceEEEeec
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~-~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (864)
...|+..+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..+... ...+.-.++|.. ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 3578888888888889999999999999999999999999999999999986 333444455554 44444 368999
Q ss_pred cccccCcCCC
Q 002937 685 RAGGLGINLA 694 (864)
Q Consensus 685 ~a~~~GinL~ 694 (864)
..+|.|-|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996653
No 144
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.87 E-value=4.9e-08 Score=116.76 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=36.6
Q ss_pred hhcccHHHHHHHHHHHHHHc---------CceEEEEeccHHHHHHHHHHHhh
Q 002937 604 LESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (864)
Q Consensus 604 ~~~s~Kl~~l~~ll~~l~~~---------g~kvlIFsq~~~~ld~L~~~L~~ 646 (864)
++..+|+..|.++|+++... +.+|||||++.++...|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 35789999999999886654 46899999999999999999965
No 145
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.84 E-value=6.4e-10 Score=87.28 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.2
Q ss_pred hhhhHhhhhcCCccc---eeeeeeccccccccccccCCCCCcc-HHHHHHHHH
Q 002937 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (864)
Q Consensus 193 ~verIi~~~~~~~~~---~ylVKW~~l~y~~~tWe~~~~~~~~-~~~i~~~~~ 241 (864)
+|||||++|...++. +|||||+|+||++||||+++.+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999666555 9999999999999999999987764 667999975
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.3e-07 Score=110.96 Aligned_cols=376 Identities=19% Similarity=0.175 Sum_probs=198.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~ 362 (864)
..|.+-|..+++-+..........+|.-.||+|||-.-+.++...+..+ +-+||++| -++.+|-...|+.-+. .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998876654456789999999999988888888877765 58999999 6888998888888774 8888
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc--
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l-- 440 (864)
++|+.-........+.- -......|||-|...+-.-... -.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~~-----LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFKN-----LGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchhh-----ccEEEEeccccccc
Confidence 88876555543332210 1124567999988776433332 358999999975
Q ss_pred cCcccHHH-----HHH-HhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 441 KNKDSKLF-----SSL-KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 441 kn~~s~~~-----~~l-~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
|..++-.+ ..+ .....-..+|-||||- ++-+++..+ +. |....
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~~~----g~----------y~~~~-------------- 376 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---LESYANAES----GK----------YKLLR-------------- 376 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---HHHHHhhhc----Cc----------eEEEE--------------
Confidence 33221111 111 1122345688899993 222222100 00 00000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHH----HHHHHHHHhCcccccCCCC
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN----VVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~----~~~~lrk~~~hp~l~~~~~ 590 (864)
+..|.. ...+|......+.-+....-..+-..+++.....+..+...-. ++| .-.-+.+-|.|..-.+.-.
T Consensus 377 -L~~R~~---~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ll-flnRRGys~~l~C~~Cg~v~~Cp~Cd 451 (730)
T COG1198 377 -LTNRAG---RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLL-FLNRRGYAPLLLCRDCGYIAECPNCD 451 (730)
T ss_pred -cccccc---ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEE-EEccCCccceeecccCCCcccCCCCC
Confidence 000000 0012222221111111100000111122222222222111000 000 0001222233322111100
Q ss_pred CCccC---chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEecc--HHHHHHHHHHHhhCCCcEEEEeccCCHHH--H
Q 002937 591 PDIED---TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQF--QHMLDLLEDYLTFKKWQYERIDGKVGGAE--R 663 (864)
Q Consensus 591 ~~~~~---~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~--~~~ld~L~~~L~~~g~~~~~i~G~~~~~~--R 663 (864)
....- .....-....... .+-...-+=|...|++.-. ....+.|..+|. +.++.++|+.++... -
T Consensus 452 ~~lt~H~~~~~L~CH~Cg~~~------~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP--~~rv~r~d~Dtt~~k~~~ 523 (730)
T COG1198 452 SPLTLHKATGQLRCHYCGYQE------PIPQSCPECGSEHLRAVGPGTERIEEELKRLFP--GARIIRIDSDTTRRKGAL 523 (730)
T ss_pred cceEEecCCCeeEeCCCCCCC------CCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC--CCcEEEEccccccchhhH
Confidence 00000 0000000000000 0000001123345555432 234445555554 789999999887544 4
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCC------------CcchhhHHHHHHHHhCCCCcEEEEE
Q 002937 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQTNKVMIFR 731 (864)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w------------np~~~~Qa~gR~~RiGQ~~~V~Vy~ 731 (864)
+..++.|.++..+ +|+.|....-|.|++....|.++|.|- ..+.+.|..||++|-+-.-.|.|-.
T Consensus 524 ~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 524 EDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred HHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEe
Confidence 6778999887666 899999999999999999998887752 2345789999999987666676555
Q ss_pred EEeC
Q 002937 732 LITR 735 (864)
Q Consensus 732 lv~~ 735 (864)
+-..
T Consensus 601 ~~P~ 604 (730)
T COG1198 601 YNPD 604 (730)
T ss_pred CCCC
Confidence 4444
No 147
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.78 E-value=1.1e-07 Score=117.01 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEec-cccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P-~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~ 380 (864)
.+++|++.|-+|+|||++++-++..+...... .+++||- ..|-.|-.++|..+........ . ..+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~-~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--K-AESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--c-ccCHHHHHHHH--
Confidence 45689999999999999998877777766433 5666777 5566889999998874433322 1 11222222110
Q ss_pred CCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc----cCCcceeEEEecccccccCcccHHHHHHHh-cc
Q 002937 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (864)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~----l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~-l~ 455 (864)
....-.|+|||-+.+...... ....+.-+||+|||||-- .+.+.+.++. ++
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHHhc
Confidence 001335999999888654322 223355689999999853 3344444433 34
Q ss_pred cccEEEeecCCCCCC
Q 002937 456 TRHRVLLTGTPLQNN 470 (864)
Q Consensus 456 ~~~rllLTgTP~~n~ 470 (864)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 466799999997654
No 148
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.77 E-value=3.9e-06 Score=102.33 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCc
Q 002937 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (864)
Q Consensus 612 ~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~Gi 691 (864)
.+.+.+..+...+.++||+..+..+++.+.+.|....++. ...|... .|.+++++|+..+.. +|+.|.+..|||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444454455567789999999999998888887655544 5555432 356789999875443 688899999999
Q ss_pred CCC--CCCEEEEeCCCCC
Q 002937 692 NLA--TADTVIIYDSDWN 707 (864)
Q Consensus 692 nL~--~a~~VI~~d~~wn 707 (864)
|++ .+..||+.-.|+-
T Consensus 709 D~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 709 DFVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCCeEEEEEecCCCC
Confidence 997 3566788776654
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=7.3e-07 Score=105.89 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+..+.+.|..|||-+.++..-+.|...|..+|+++..+..... ..-.++|.. ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEecc
Confidence 457899999999999999999999999999999999999999999998877643 222344443 33334 4699999
Q ss_pred ccccCcCCC--------CCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
.+|+|.|+. +.=+||.-..+-|...+.|..||++|.|..-....
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 999998876 34588989999999999999999999998755443
No 150
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.71 E-value=2.2e-06 Score=97.14 Aligned_cols=241 Identities=18% Similarity=0.263 Sum_probs=134.1
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe-ccccHHHHH
Q 002937 277 SPEFLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA-PLSTLRNWE 349 (864)
Q Consensus 277 ~p~~~~~~~L~~yQ~~~v~~l~~~~~------~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~-P~sll~qW~ 349 (864)
.|. +..+-|.--|+++|.|...... ..-|.+|.|.-|.||-.+...+|..-+-.+.++.|.+. .+.+-..-+
T Consensus 257 lP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 257 LPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred ccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchh
Confidence 344 5567899999999998754332 23367899999999977766666554445555666554 455556667
Q ss_pred HHHHHHc-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc------
Q 002937 350 REFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA------ 422 (864)
Q Consensus 350 ~E~~~~~-p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~------ 422 (864)
+.+.... +++.|..+.. +.+ + .+....+...+--|+++||..+.....
T Consensus 336 RDL~DigA~~I~V~alnK----------~KY--------------a-kIss~en~n~krGViFaTYtaLIGEs~~~~~ky 390 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNK----------FKY--------------A-KISSKENTNTKRGVIFATYTALIGESQGKGGKY 390 (1300)
T ss_pred hchhhcCCCCccceehhh----------ccc--------------c-cccccccCCccceeEEEeeHhhhhhccccCchH
Confidence 7776654 3333322211 000 0 011112334566799999998854422
Q ss_pred --ccCC-cce------eEEEecccccccC-------cccHHHHHHHhc----ccccEEEeecCCCCCCHhHHHhhhhhcC
Q 002937 423 --SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLD 482 (864)
Q Consensus 423 --~l~~-~~w------~~vIvDEaH~lkn-------~~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~~ll~~l~ 482 (864)
.+.+ +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||-.. |=-++.-+.+
T Consensus 391 rtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~R 466 (1300)
T KOG1513|consen 391 RTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVR 466 (1300)
T ss_pred HHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----Ccchhhhhhh
Confidence 1211 234 4899999999998 334555554444 45567888998532 2222333333
Q ss_pred CC------CCCChHHHHHHHhccc--hHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 002937 483 AG------KFGSLEEFQEEFKDIN--QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (864)
Q Consensus 483 p~------~~~~~~~f~~~~~~~~--~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~ 553 (864)
.+ .|+++.+|........ ..+.+. .--.++...+.|-. .+......+-.|+|+++=++.|+....
T Consensus 467 LGlWGegtaf~eF~eFi~AvEkRGvGAMEIVA-MDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 467 LGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVA-MDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hccccCCCcCccHHHHHHHHHhcCCceeeeee-hhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHHHH
Confidence 33 3556666654432110 011111 11112222222211 344556778889999999998876544
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.2e-06 Score=105.94 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC-CCceEEEec-cccHHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAP-LSTLRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~~-~~~~LIV~P-~sll~qW~~E~~~~ 355 (864)
..+||.|.+....+......+.++++-.+||+|||+.+|+....... .+ ..++++.+. .+-+.|-.+|+++.
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999988776655443 22 235555555 46678999999883
No 152
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.69 E-value=4.5e-07 Score=102.28 Aligned_cols=140 Identities=20% Similarity=0.320 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcCCCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p~~~~ 361 (864)
-+|-|+|..++.-+ .++..+++..-|..|||+.|- |++..|+.. .+++...|-..+ .|=.+|+..-+.+ |
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 47999999997644 889999999999999999984 444555444 378888895444 5666777654433 2
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHh----cccccCCcceeEEEeccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 437 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~----~~~~l~~~~w~~vIvDEa 437 (864)
-..+|+-. -.+...-+|+|-+.++. ..+.++.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 23333321 11345678888888865 3445555666 999999
Q ss_pred ccccCcccHH-HHH-HHhccc-ccEEEeecCC
Q 002937 438 HRLKNKDSKL-FSS-LKQYST-RHRVLLTGTP 466 (864)
Q Consensus 438 H~lkn~~s~~-~~~-l~~l~~-~~rllLTgTP 466 (864)
|+++....-. +.. +.-++. -+-+.||||-
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEeccC
Confidence 9998744221 111 222233 3458899993
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.68 E-value=3.4e-06 Score=104.75 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=65.9
Q ss_pred HHHHHHHHHH-HcCceEEEEeccHHHHHHHHHHHhhCCC--cEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q 002937 612 LLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (864)
Q Consensus 612 ~l~~ll~~l~-~~g~kvlIFsq~~~~ld~L~~~L~~~g~--~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~ 688 (864)
.+.+.|..+. ..+.++|||..+..++..+.+.|..... .+..+.-+++...|.+++++|+..+.. +|+.+.+..
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 4444444444 3456888888888888888888864322 133333233335688999999875443 678889999
Q ss_pred cCcCCCC--CCEEEEeCCCC-Ccc
Q 002937 689 LGINLAT--ADTVIIYDSDW-NPH 709 (864)
Q Consensus 689 ~GinL~~--a~~VI~~d~~w-np~ 709 (864)
||||+++ ...|||.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999995 48899999887 554
No 154
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.67 E-value=5.7e-09 Score=115.91 Aligned_cols=48 Identities=46% Similarity=1.101 Sum_probs=43.7
Q ss_pred cccccccccCCce---eecCCCCCcccccccCCCC--CCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~l---~~C~~C~~~~H~~Cl~p~~--~~~p~~~W~C~~C~~~ 98 (864)
+++|..|++.|.. ++||+|+++||+.||.||+ +.+|.|.|+|++|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 4599999999886 9999999999999999995 7799999999999853
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.65 E-value=9.9e-06 Score=94.57 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCCCCceEEEecc-ccHHHHHHHHHHHc-----CCCeEE
Q 002937 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~-----p~~~~~ 362 (864)
|.+-+..+...+.++...++-..+|+|||+..+.-+ ..+......++||++|. .+..|+.+++..+. ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 777778888888888889999999999998875554 33332334699999995 55578888876554 246666
Q ss_pred EEecC
Q 002937 363 MYVGT 367 (864)
Q Consensus 363 ~~~g~ 367 (864)
+..|.
T Consensus 82 ~lkGr 86 (636)
T TIGR03117 82 FFPGS 86 (636)
T ss_pred EEECC
Confidence 66654
No 156
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.64 E-value=3.9e-06 Score=97.51 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec-cccHHHHHHHHHH-H-cCCCeE
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFAT-W-APQMNV 361 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P-~sll~qW~~E~~~-~-~p~~~~ 361 (864)
.-.+|.+-+. ....+..++|..++-.|||+..--++...++. ..+-++.|+| .+++.|-..++.. | ++.+.-
T Consensus 512 Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3458887654 34788999999999999999988888776654 4568999999 5666776666543 2 222211
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc---cCC--cceeEEEecc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKP--IKWQCMIVDE 436 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~---l~~--~~w~~vIvDE 436 (864)
|..-.-...++|. .....++|+||-++.+...... -.. -+..++|+||
T Consensus 588 ----g~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 ----GVSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ----chhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 1111122223331 1234688999999988543221 111 1457999999
Q ss_pred cccccCc-ccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhh
Q 002937 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (864)
Q Consensus 437 aH~lkn~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~ 479 (864)
.|.+.|. .+.....+..+.....|.|||| ++|+..++.-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999886 4566666767777778999999 477777766665
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.59 E-value=4.7e-06 Score=100.67 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHcCceEEEEeccHHHHHHHHHHHhhCCCc-EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCC--CC
Q 002937 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--AD 697 (864)
Q Consensus 621 ~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~--a~ 697 (864)
...+.++|||..+-.++..+.+.+...... .....|.. .+...++.|.+.... .+++.+...+||||++. ..
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 334558999999999999999999876553 34444443 344889999887664 48999999999999985 68
Q ss_pred EEEEeCCCCC
Q 002937 698 TVIIYDSDWN 707 (864)
Q Consensus 698 ~VI~~d~~wn 707 (864)
.||+.-.||=
T Consensus 551 ~vvI~~lPfp 560 (654)
T COG1199 551 LVVIVGLPFP 560 (654)
T ss_pred EEEEEecCCC
Confidence 8999877763
No 158
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.54 E-value=5.7e-06 Score=93.51 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=81.4
Q ss_pred eEEEEeccHHHHHHHHHHHhhC----C--C--cEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCC
Q 002937 626 RVLIYSQFQHMLDLLEDYLTFK----K--W--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (864)
Q Consensus 626 kvlIFsq~~~~ld~L~~~L~~~----g--~--~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~ 697 (864)
-+|||=.-....+...+.|... + . -+.-++|+.+.++..++ |...+.+...+++||+.+...|++.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 6899988877777666666432 1 1 24568899998876655 7666656667899999999999999988
Q ss_pred EEEEe----CCCCCc-----------chhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 698 TVIIY----DSDWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 698 ~VI~~----d~~wnp-----------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
.||=- -.-||| ..-.||..|++|-|.+.+..+|||+++.-+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 87621 112444 245678888888888999999999998766
No 159
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.53 E-value=9.4e-07 Score=105.83 Aligned_cols=143 Identities=18% Similarity=0.296 Sum_probs=90.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEeccccH-HHHHH---------HHHHHcCC--CeEEEEecChHH-
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWER---------EFATWAPQ--MNVVMYVGTSQA- 370 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P~sll-~qW~~---------E~~~~~p~--~~~~~~~g~~~~- 370 (864)
.+..+.++||+|||.+++..+.+|... +...+|||||...+ ..... .|...+++ +...+|.+....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999998765 55699999997554 22222 23332322 344455443210
Q ss_pred --H----HHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--cc------C--Ccce-----
Q 002937 371 --R----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL------K--PIKW----- 429 (864)
Q Consensus 371 --r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l------~--~~~w----- 429 (864)
| ..++.+ . ..........+|+|+|.+++.++.. .. . ..+|
T Consensus 140 ~gr~~~~~~i~~F---a----------------~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNF---V----------------KASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHH---H----------------hccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 1 111111 0 0011122356899999999976421 11 1 1233
Q ss_pred --eEEEecccccccCcccHHHHHHHhcccccEEEeecCCC
Q 002937 430 --QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (864)
Q Consensus 430 --~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~ 467 (864)
-+||+||+|++.. ..+...++..+...+.|..|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 3799999999965 345678899999999999999964
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.51 E-value=6.7e-06 Score=95.99 Aligned_cols=113 Identities=10% Similarity=0.293 Sum_probs=82.1
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
+.+..++..|+..+. .|++|.|||......+++++++...+.++..++|..+..+. +.+ ..+-+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 444556667776664 59999999999999999999999999999999887665522 223 23346888888
Q ss_pred cccCcCCCC--CCEEEEe--CCCCCcch--hhHHHHHHHHhCCCCcEEEE
Q 002937 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 687 ~~~GinL~~--a~~VI~~--d~~wnp~~--~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
.+.|+++-. .|.|..| .....|.. ..|.+||+-.+... ++.||
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 888998863 5667666 33344654 58999999988743 34443
No 161
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.45 E-value=5.5e-08 Score=76.34 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.4
Q ss_pred hhhhHhhhhcCC--ccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 193 ~verIi~~~~~~--~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
.|++||++|... +..+|||||+|++|.+||||+.+.+......++.|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 469999999766 7899999999999999999998877655667777753
No 162
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.44 E-value=1.5e-05 Score=95.07 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=90.8
Q ss_pred cHHHHHHHHHHHHHHc--CceEEEEeccHHHHHHHHHHHhh----C---CCcEEEEeccCCHHHHHHHHHHhcCCCCCce
Q 002937 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLTF----K---KWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (864)
Q Consensus 608 ~Kl~~l~~ll~~l~~~--g~kvlIFsq~~~~ld~L~~~L~~----~---g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~ 678 (864)
-...++..++..+.+. ...+|||-.-...+..+.+.|.. . .+-+..++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3455566666655543 35899999888777777776642 2 2556778999998877765 787788777
Q ss_pred EEEeeccccccCcCCCCCCEEEE--------eCCC---------C-CcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHH
Q 002937 679 CFLLSTRAGGLGINLATADTVII--------YDSD---------W-NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 679 v~Llst~a~~~GinL~~a~~VI~--------~d~~---------w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
.++++|..+..+|++.++-.||- ||+. | +-++-.||.||++| ..+-..|+|+++.-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 78999999999999998877763 4442 2 33445677777766 56778899998765444
Q ss_pred H
Q 002937 741 R 741 (864)
Q Consensus 741 ~ 741 (864)
.
T Consensus 549 ~ 549 (924)
T KOG0920|consen 549 L 549 (924)
T ss_pred c
Confidence 3
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.42 E-value=1e-06 Score=81.77 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=71.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcC
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~ 381 (864)
.++.-.+|-.-+|.|||-..+.-+..-.-....++||++|.-++. +|+.+...+..+ -+....-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec----------
Confidence 456677889999999998765543322222345999999987763 455555544442 222111100
Q ss_pred CCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc-ccccCCcceeEEEecccccccCcccHHHHH-HHhcc---c
Q 002937 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYS---T 456 (864)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~-~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~-l~~l~---~ 456 (864)
.....--|-+++|.++... .......+|++||+||||-. .+.|-.... +..+. .
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0123445788899887553 22334568999999999974 444433322 23332 1
Q ss_pred ccEEEeecCC
Q 002937 457 RHRVLLTGTP 466 (864)
Q Consensus 457 ~~rllLTgTP 466 (864)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2579999999
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.42 E-value=4e-05 Score=92.29 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-CCcEEEEeccCCHHHHHHHHHHhcC----CCCCceEEEeecc
Q 002937 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA----KNSSRFCFLLSTR 685 (864)
Q Consensus 611 ~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~Fn~----~~~~~~v~Llst~ 685 (864)
..+.+.|..+...+.++|||..+..+++.+.+.|... +++ ..+.|. ..|.++++.|.+ ++. .+|+++.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEec
Confidence 3444555444445556888888888888888888642 333 344553 357788877764 222 2678889
Q ss_pred ccccCcCCCC--CCEEEEeCCCCC
Q 002937 686 AGGLGINLAT--ADTVIIYDSDWN 707 (864)
Q Consensus 686 a~~~GinL~~--a~~VI~~d~~wn 707 (864)
+..+|||+++ +..|||.-.|+-
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred cccccccCCCCceEEEEEEcCCCC
Confidence 9999999984 789999988873
No 165
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.41 E-value=5.7e-06 Score=96.65 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=88.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCCCCceEEEeccccHHH-HHHHHHHHcC--CCe
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPLSTLRN-WEREFATWAP--QMN 360 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~~~~~LIV~P~sll~q-W~~E~~~~~p--~~~ 360 (864)
.++++|.+.+.- .....+++.|.+.+++.|||+.|=.++ ..++. ..+.+|.+.|--.+.| =..++..+.- +++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 577888887642 222478899999999999999874333 33322 2346788888444433 3333444431 344
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCC----cceeEEEecc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDE 436 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~----~~w~~vIvDE 436 (864)
+-.|.|.-.. ......-++.|+|.|......+.+-. ..-.+|||||
T Consensus 300 ve~y~g~~~p------------------------------~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 300 VEEYAGRFPP------------------------------EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred chhhcccCCC------------------------------CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 4444432110 11123457999999988776554422 1346899999
Q ss_pred cccccCc--ccHHHHHHHhc---ccc---cEEEeecCCCCCC
Q 002937 437 GHRLKNK--DSKLFSSLKQY---STR---HRVLLTGTPLQNN 470 (864)
Q Consensus 437 aH~lkn~--~s~~~~~l~~l---~~~---~rllLTgTP~~n~ 470 (864)
-|-+... +..+-..+..+ ... ..+++|||-.+|.
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 9998543 33222222222 111 2599999964433
No 166
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.39 E-value=8.6e-08 Score=73.87 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.7
Q ss_pred ccccccc---CCceeecCCCCCcccccccCCCCC--CCCCCCcccCccC
Q 002937 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (864)
Q Consensus 53 ~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~~~--~~p~~~W~C~~C~ 96 (864)
+|.+|++ .+.+|.|+.|.+.||..|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 455999999999999999999987 4556799999996
No 167
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.38 E-value=1.3e-07 Score=106.04 Aligned_cols=48 Identities=33% Similarity=0.888 Sum_probs=42.4
Q ss_pred cccccccccCCc---eeecCCCCCc-ccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~---l~~C~~C~~~-~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
..-|.+|...+. ||+||.|..+ ||++||+|++..+|-+.|+|++|...
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 356888886643 9999999998 99999999999999999999999864
No 168
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.38 E-value=9.1e-06 Score=91.04 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=79.7
Q ss_pred eEEEEeccH----HHHHHHHHHHhh------CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCC
Q 002937 626 RVLIYSQFQ----HMLDLLEDYLTF------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT 695 (864)
Q Consensus 626 kvlIFsq~~----~~ld~L~~~L~~------~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~ 695 (864)
-+|||-.-. .+.++|.+.|.. .++.+.-|....+.+-..++ |+..+.+...++++|..+...|.+++
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecc
Confidence 455564322 234455554432 26677788888887655544 77666666678999999999999999
Q ss_pred CCEEEEeCC----CCCc-----------chhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHH
Q 002937 696 ADTVIIYDS----DWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 696 a~~VI~~d~----~wnp-----------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~ 744 (864)
...||=... -+|| ..-.||-.|++|-|.+.+-..||++|+.++...|+.
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 988874322 2343 333556667777777888999999999998888864
No 169
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.34 E-value=2.4e-07 Score=91.71 Aligned_cols=47 Identities=36% Similarity=1.039 Sum_probs=41.4
Q ss_pred ccccccccccccC--CceeecCC--CCC-cccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGES--ENLMSCDT--CTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~--~~l~~C~~--C~~-~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+++..+|. |++. |.|+-||. |.+ +||+.|+ .|..+|+|.|+|+.|..
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 55678888 8876 88999996 987 7999999 99999999999999975
No 170
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.29 E-value=2.2e-06 Score=89.37 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCCceEEEeeccccccCcCCCCC--------CEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 665 ~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a--------~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
...+.|+++... ++|-++|||+||+|++- ..-|.++++|+....+|.+||+||.||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456689886543 45557999999999953 2357899999999999999999999999876544555556
Q ss_pred CHHHHHHHHHHHhhhHHHHHh
Q 002937 737 SIEERMMQMTKKKMVLEHLVV 757 (864)
Q Consensus 737 TiEe~i~~~~~~K~~l~~~v~ 757 (864)
..|.+......+|+.--.+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999988888887655554
No 171
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.8e-05 Score=93.03 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=81.3
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE
Q 002937 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (864)
Q Consensus 624 g~kvlIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V 699 (864)
..-+|||-.-....+-..+.|.. ....+.-++|..+.++.+++ |+....+...+++||+.+.++|++.++..|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45799998888877777777765 35778889999999888774 666555644479999999999999999888
Q ss_pred EEeC----CCCCcchh-----------hHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 700 IIYD----SDWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 700 I~~d----~~wnp~~~-----------~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
|=-- +-|||..- ..|.-|++|-|.+.+-..|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7321 12333322 2244455555557788899999986555
No 172
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.22 E-value=3.7e-07 Score=71.57 Aligned_cols=49 Identities=37% Similarity=0.630 Sum_probs=41.4
Q ss_pred hhhhHhhhh-cCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 193 TVDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 193 ~verIi~~~-~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
.|+||++.| ...+..+|||||+|++|.++||+....+......+.+|..
T Consensus 3 ~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 3 EVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred chheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 389999999 7778899999999999999999998766545667777765
No 173
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.22 E-value=2.7e-06 Score=90.32 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=85.7
Q ss_pred CceEEEEeccHHHHHHHHHHHhhC---CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEE
Q 002937 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (864)
Q Consensus 624 g~kvlIFsq~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI 700 (864)
-.|.||||....-.|-|+++++.+ .++.+.++|...+.+|.+.++.|...+ +.||++|++++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d---vkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD---VKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC---eEEEEEehhhhccccccCCceEE
Confidence 469999999999999999999875 467889999999999999999997644 45999999999999999999999
Q ss_pred EeCCCCCcchhhHHHHHHHHh
Q 002937 701 IYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 701 ~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
....|-.-++|.+||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 174
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.22 E-value=3.6e-07 Score=71.62 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.4
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.+++|+++|....... ..+|||||+|+++.||||+|++.|... +| ..++.|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888875332210 369999999999999999999988632 22 357777653
No 175
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.20 E-value=0.0011 Score=79.91 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHHh----hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecc-ccHHHHHHHHHHHc--CC
Q 002937 287 HPYQLEGLNFLRFS----WSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~----~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~-sll~qW~~E~~~~~--p~ 358 (864)
+-+|-.|++.+... -..|--++-...||.|||+.-.-++..|.....| ++-|..=+ ++.-|=-+++++-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 45898888776432 2234446667899999999998888888877766 55555554 44456666666543 35
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCC----Cchhh---h--------cccCCccc--------c-c-cccccCCCcEEEcc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPK----NPKKV---K--------KKKSGQVV--------S-E-SKQDRIKFDVLLTS 413 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~----~~~~~---~--------~~~~~~~~--------~-~-~~~~~~~~~vvitt 413 (864)
-...+..|+...++.....+--... +.... . -...+.+. . . .........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 5678888988888765321110000 00000 0 00001100 0 0 11122345799999
Q ss_pred HHHHHhcccccC---------CcceeEEEecccccccCcccHHHHHHHh---cccccEEEeecCCCCCCHhHH
Q 002937 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDEL 474 (864)
Q Consensus 414 y~~~~~~~~~l~---------~~~w~~vIvDEaH~lkn~~s~~~~~l~~---l~~~~rllLTgTP~~n~~~el 474 (864)
.+.+......+. .+--..|||||+|-+-.........+.. .-....++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 888865442222 1223579999999774333222222222 235678999999644433333
No 176
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.17 E-value=1.3e-05 Score=85.97 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCCC----CceEEEecccc-HHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~~~----~~~LIV~P~sl-l~qW~~E~~~~ 355 (864)
.+.||.|++-++.+...+..+..+|+-.++|+|||+..+..+. ++..... .+++++++... +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999999888888889999999999999999999876654 3333333 27777777533 34444555554
No 177
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.17 E-value=1.3e-05 Score=85.97 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCCC----CceEEEecccc-HHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~~~----~~~LIV~P~sl-l~qW~~E~~~~ 355 (864)
.+.||.|++-++.+...+..+..+|+-.++|+|||+..+..+. ++..... .+++++++... +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999999888888889999999999999999999876654 3333333 27777777533 34444555554
No 178
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.12 E-value=1.2e-06 Score=81.07 Aligned_cols=29 Identities=45% Similarity=1.039 Sum_probs=26.5
Q ss_pred cccccccCCCCCCCCCCCcccCccCCCCc
Q 002937 72 AYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 72 ~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 100 (864)
+||+.||+|||..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 59999999999999999999999997543
No 180
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00035 Score=82.50 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..+.+-+......|..|||-+.++..-+.+...|...|++...+...-. .|+.-|-.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 456888899999999999999999999999999999999999999999987755 333333333 33333 3588999
Q ss_pred ccccCcCCC-CCC----------EEEEeCCCCCcchhhHHHHHHHHhCC
Q 002937 686 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 686 a~~~GinL~-~a~----------~VI~~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
.+|.|-++. ..+ +||=-+-.-+-..+.|-.||++|.|-
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 999999986 343 45555555666667799999999993
No 181
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.11 E-value=2.4e-06 Score=66.97 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=38.2
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (864)
.+++|++.|.... ....+|||||+|+++.||||+|++.|... ..++++|.+
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4578888875432 12379999999999999999999998642 246777764
No 182
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.99 E-value=3.1e-06 Score=89.38 Aligned_cols=50 Identities=28% Similarity=0.725 Sum_probs=41.0
Q ss_pred cccccccccc-cccCCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCCC
Q 002937 47 IDAKDDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 47 ~~~~~~~C~~-C~~~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+.+...+|.. |...|+|+-||. |+ .+||+.|+ .|...|.|.||||.|...
T Consensus 215 d~~e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 215 DPDEPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCCCEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhhh
Confidence 3445566654 445688999998 99 89999999 999999999999999853
No 183
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.93 E-value=0.00037 Score=78.52 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=69.7
Q ss_pred ceEEEEeccHHHHHHHHHHHh----hC-----CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCC
Q 002937 625 HRVLIYSQFQHMLDLLEDYLT----FK-----KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT 695 (864)
Q Consensus 625 ~kvlIFsq~~~~ld~L~~~L~----~~-----g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~ 695 (864)
.-+|||-.-.+.+...++.|. .. .+-++-|+.+.+.+...++ |...+.+...++++|..+...|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 356777655554444444332 22 2345667788887766665 66555555568999999999999998
Q ss_pred CCEEEEeCCC------CCcc--------------hhhHHHHHHHHhCCCCcEEEEEEEeCCCHHH
Q 002937 696 ADTVIIYDSD------WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 696 a~~VI~~d~~------wnp~--------------~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
...|| ||. +||. .-.||-||++|.| +-..|||++.-+++.
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhhhhh
Confidence 87776 443 3443 3457766666655 566789998665544
No 184
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=4.8e-06 Score=83.27 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=42.1
Q ss_pred cccccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccC-ccCC
Q 002937 47 IDAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECVS 97 (864)
Q Consensus 47 ~~~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~-~C~~ 97 (864)
....+..|.+|+++ +++++||.|+++||..|+ .|.++|.|.|.|. .|..
T Consensus 310 ~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 310 KCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHHH
Confidence 44567889999977 459999999999999999 9999999999998 4553
No 185
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.89 E-value=3.6e-06 Score=87.09 Aligned_cols=39 Identities=41% Similarity=0.693 Sum_probs=32.2
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHH
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
.+++||..|.+... .||||||+|+|+.||||+|++++.-
T Consensus 12 AaEsIlkkRirKGr----------------vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 12 AAESILKKRIRKGR----------------VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred HHHHHHHHHhhccc----------------eEEEEEecccccccCccCccccccC
Confidence 45777777765533 8999999999999999999999863
No 186
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.85 E-value=4.3e-05 Score=84.29 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=78.5
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCc-EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEE
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI 700 (864)
..|.-|+-||... +-.+...++.+|.. .+.|.|+.+++.|.+.-..||++.+.. .+|++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeecccccccccc-eeEEE
Confidence 4588889898532 23344555666655 999999999999999999999976654 4899999999999994 78899
Q ss_pred EeCCC---------CCcchhhHHHHHHHHhCCC
Q 002937 701 IYDSD---------WNPHADLQAMARAHRLGQT 724 (864)
Q Consensus 701 ~~d~~---------wnp~~~~Qa~gR~~RiGQ~ 724 (864)
|++.- -...+..|.-|||+|.|.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 98764 3455678999999999876
No 187
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.85 E-value=9.8e-05 Score=76.75 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHh-------cCCCCceEEEecc-ccHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~-~ILade~GlGKTi~ai~~i~~l~-------~~~~~~~LIV~P~-sll~qW~~E~~~ 354 (864)
+|.+.|.+++..+ ..... .++..++|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3778999998655 45555 88999999999988888887773 3445699999994 555666666655
No 188
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.82 E-value=0.0018 Score=75.40 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=41.3
Q ss_pred EEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhC
Q 002937 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (864)
Q Consensus 679 v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiG 722 (864)
.|+.|--|+-+|-|-|.+=++.=+-+.-|-..-.|-+||..|+-
T Consensus 485 RFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 485 RFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred eeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 37999999999999999999999999999999999999999975
No 189
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.75 E-value=9.2e-06 Score=87.24 Aligned_cols=48 Identities=46% Similarity=1.041 Sum_probs=42.0
Q ss_pred cccccccccccCCc---eeecCCCCCcccccccCCCCCCCCCC----CcccCccC
Q 002937 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSG----SWRCPECV 96 (864)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~----~W~C~~C~ 96 (864)
.-...|.+|.+..+ ++.||+|...||+.||.|||+..|.- .|.|.+|.
T Consensus 542 a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 542 AMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 34567999998866 89999999999999999999999954 49999994
No 190
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00017 Score=82.70 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=48.5
Q ss_pred HHhcCCCCCceEEEeeccccccCcCCCCCCEEEE--------eCC---------CC-CcchhhHHHHHHHHhCCCCcEEE
Q 002937 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVII--------YDS---------DW-NPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 668 ~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~--------~d~---------~w-np~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
.-|...+.+....+++|.++.+.|+++...+||= ||+ +| +-+.-.||-|||+|+| +-+.
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCce
Confidence 3476666666668999999999999999999873 444 34 3444568888888877 5678
Q ss_pred EEEEeC
Q 002937 730 FRLITR 735 (864)
Q Consensus 730 y~lv~~ 735 (864)
|||++.
T Consensus 698 YRLYSS 703 (1172)
T KOG0926|consen 698 YRLYSS 703 (1172)
T ss_pred eehhhh
Confidence 888764
No 191
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.64 E-value=0.00058 Score=71.54 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH----HHHHHHHHHHcCC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll----~qW~~E~~~~~p~ 358 (864)
|..+++-|+-|+-.| ..|-|.-..||=|||+++.. .+.+..-...++=||+.+..| .+|...|-+++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l-~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAAL-PAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHH-HHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHH-HHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 356778888887444 34559999999999998743 334434344578888888877 45888888887 7
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc---------ccccCCcce
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~---------~~~l~~~~w 429 (864)
+.+-...+......... ....+|+-+|...+..| .......++
T Consensus 147 lsv~~~~~~~~~~~r~~----------------------------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERRE----------------------------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHHH----------------------------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHHH----------------------------HHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 77776666543221111 23567888887777543 111123467
Q ss_pred eEEEecccccc
Q 002937 430 QCMIVDEGHRL 440 (864)
Q Consensus 430 ~~vIvDEaH~l 440 (864)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999999765
No 192
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.61 E-value=7.2e-05 Score=58.47 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=29.2
Q ss_pred eeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.+|||||+|+++.++||+|.++|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 79999999999999999999998631 2366777654
No 193
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.48 E-value=4.9e-05 Score=85.84 Aligned_cols=47 Identities=28% Similarity=0.813 Sum_probs=41.5
Q ss_pred ccccccccccC-----CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
++..|.+|..+ .+|++||.|.-..|+.|. .+..+|+|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhcccc
Confidence 56779999866 349999999999999999 899999999999999853
No 194
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.47 E-value=5.1e-05 Score=85.15 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=44.9
Q ss_pred ccccccccccccCCc---eeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
...+.+|..|+.+|+ ++.|+.|+-+||.+|..|+...+|.|.|+|+.|..
T Consensus 65 C~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 65 CPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred cCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 445788999997776 99999999999999999999999999999998874
No 195
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.37 E-value=0.0043 Score=67.85 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=48.3
Q ss_pred EEEeeccccccCcCCCCCCEEEEeCCC------CCc-----------chhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHH
Q 002937 679 CFLLSTRAGGLGINLATADTVIIYDSD------WNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (864)
Q Consensus 679 v~Llst~a~~~GinL~~a~~VI~~d~~------wnp-----------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~ 741 (864)
.+++||..+...+.+.+.-.|| ||. +|| ..-.||..|++|.|.+++-..|+|+++..++..
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 4799999999888887765554 443 344 456799999999999999999999998766544
Q ss_pred H
Q 002937 742 M 742 (864)
Q Consensus 742 i 742 (864)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 4
No 196
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.31 E-value=0.00097 Score=73.68 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=99.3
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh----hCCC----cEEEEeccCCHHHHHHHHHHhcCCCCCc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~----~~g~----~~~~i~G~~~~~~R~~~i~~Fn~~~~~~ 677 (864)
.+.|+....+++.++...|-|+|-||......+++-...+ .-|- .+..+.|+...++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 5778888899999999999999999999887665433221 1111 2345678888888888766542 344
Q ss_pred eEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHH
Q 002937 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (864)
Q Consensus 678 ~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~ 743 (864)
..-+++|.|+..||++-..|.|+.+.-|.+-+++.|..||++|-.... ..|| .+..+.+|+..+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lavy-va~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAVY-VAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEEE-EEeccchhhHhh
Confidence 557999999999999999999999999999999999999999965332 3322 334455666543
No 197
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0013 Score=67.94 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=83.3
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEeccccHHHHHHHHHHHcCCCeEEEE
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~-~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~ 364 (864)
....|...+.++ ..+..+++.-+.|+|||+.++++..... .....+++|+=|.-.. .|.-.|.|+
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG------ 125 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPG------ 125 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCC------
Confidence 456888888777 3456888899999999999999888644 4333345554443222 233333432
Q ss_pred ecChHHHH------HHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 365 ~g~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+..++- .....+...... .... .. ....-.|-+.+...++. ..+.-++||+||||
T Consensus 126 --~~~eK~~p~~~pi~D~L~~~~~~~--~~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 126 --DIAEKFAPYFRPVYDVLVRRLGAS--FMQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhChH--HHHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 111110 000011000000 0000 00 00112355555554432 12234689999999
Q ss_pred cccCcccHHHHHHHhcccccEEEeecCCCCCC
Q 002937 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 470 (864)
++.- ......+..+....+++++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8864 45556677788889999999997665
No 198
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.29 E-value=0.00018 Score=87.02 Aligned_cols=52 Identities=29% Similarity=0.722 Sum_probs=43.3
Q ss_pred ccccccccccccCC-----ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcc
Q 002937 48 DAKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (864)
Q Consensus 48 ~~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~ 101 (864)
.+.+..|.+|.++. .+|.||.|+.++|+.|.. ...+|+|.|+|..|.-.+..
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCc
Confidence 35568899999763 389999999999999995 66799999999999975543
No 199
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.26 E-value=0.00017 Score=85.08 Aligned_cols=48 Identities=35% Similarity=0.854 Sum_probs=45.4
Q ss_pred cccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
++.|.+|.+.|+++||.+|++.||+.|..||+.+.|+..|.|-.|..+
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 478999999999999999999999999999999999999999999854
No 200
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.20 E-value=0.00012 Score=80.45 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=41.0
Q ss_pred ccccccccCC-----ceeecCCCCCcccccccCCCCCC----CCCCCcccCccCCCCccc
Q 002937 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDI 102 (864)
Q Consensus 52 ~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~~~~----~p~~~W~C~~C~~~~~~~ 102 (864)
..|.+|+.++ .||.|+.|...||..|+.|+.++ .|...|+|..|......+
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 4488888653 39999999999999999999754 467789999999754443
No 201
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.18 E-value=8e-05 Score=93.89 Aligned_cols=53 Identities=32% Similarity=0.871 Sum_probs=46.2
Q ss_pred cccccccccccccCC---ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 47 IDAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
.......|.+|...+ +++.|+.|..+||+.|+.|.+..+|.|+|+||.|....
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 345667899998654 39999999999999999999999999999999998644
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.15 E-value=0.002 Score=64.88 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHHHHHcCCCeEEEE
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~ 364 (864)
+.+.|..+++.|. +..-.++.-..|+|||+.|++....+...+ ..+++|+-|..-.. +++ -+.|+----.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~---~~l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG---EDL-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc---ccc-ccCCCCHHHHH
Confidence 4568999998774 667888999999999999999887776554 44777777755332 222 11221100000
Q ss_pred ecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcc
Q 002937 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKD 444 (864)
Q Consensus 365 ~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~ 444 (864)
... .+......+..+...... .-.....|-+.+...++. ..+...+||+|||+++..
T Consensus 77 ~p~--~~p~~d~l~~~~~~~~~~--------------~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~-- 133 (205)
T PF02562_consen 77 EPY--LRPIYDALEELFGKEKLE--------------ELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP-- 133 (205)
T ss_dssp -TT--THHHHHHHTTTS-TTCHH--------------HHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--
T ss_pred HHH--HHHHHHHHHHHhChHhHH--------------HHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCH--
Confidence 000 011111111111110000 000112233333332221 223458999999998753
Q ss_pred cHHHHHHHhcccccEEEeecCCCCCCH
Q 002937 445 SKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (864)
Q Consensus 445 s~~~~~l~~l~~~~rllLTgTP~~n~~ 471 (864)
..+...+.++....++.++|-|.|.+.
T Consensus 134 ~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 134 EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp HHHHHHHTTB-TT-EEEEEE-------
T ss_pred HHHHHHHcccCCCcEEEEecCceeecC
Confidence 344455677777899999999977653
No 203
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=97.01 E-value=0.0007 Score=71.92 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=49.1
Q ss_pred ccchhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHhhhc
Q 002937 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (864)
Q Consensus 190 ~~~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~~~ 246 (864)
+...+|+|+++|...|..+|||||+|.|=.+.|||++.....+.+.|+.|.......
T Consensus 47 ~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 47 EEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred chhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 446899999999988889999999999999999999986667789999998754433
No 204
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.00 E-value=0.0019 Score=73.02 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~~p~~~~~ 362 (864)
.+|.--|..||... -++.=.||.-++|+|||++..+++.++.+...+|+||++|.++ +.|-..-|.+- +++++
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 47888999999766 4566789999999999999999999999988899999999655 46666667653 47776
Q ss_pred EEec
Q 002937 363 MYVG 366 (864)
Q Consensus 363 ~~~g 366 (864)
-...
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6554
No 205
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.96 E-value=0.00035 Score=75.35 Aligned_cols=65 Identities=31% Similarity=0.743 Sum_probs=50.0
Q ss_pred cccccccccccccCCc-----eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcccccccccccccCccC
Q 002937 47 IDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~-----l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~kil~~r~~p~~~~ 116 (864)
++.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-... .|..|-+.|...|
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~---~i~~C~fCps~dG 258 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEY---QIRCCSFCPSSDG 258 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhccccc---ceeEEEeccCCCC
Confidence 3445678888886533 9999999999999999 78899999999999985443 4555656665543
No 206
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.86 E-value=0.0023 Score=62.85 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHcCceEEEEeccHHHHHHHHHHHhhCCC--cEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc--ccccCcCCCC-
Q 002937 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 695 (864)
Q Consensus 621 ~~~g~kvlIFsq~~~~ld~L~~~L~~~g~--~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~--a~~~GinL~~- 695 (864)
...+.++|||..+...++.+.+.+...+. .+..+.- +..++..+++.|..+... +|+++. ..++|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976532 1122221 356889999999885443 677777 8899999984
Q ss_pred -CCEEEEeCCCC
Q 002937 696 -ADTVIIYDSDW 706 (864)
Q Consensus 696 -a~~VI~~d~~w 706 (864)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 88999998887
No 207
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=96.82 E-value=0.0011 Score=69.25 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=43.1
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
+.+|.||.+|-.-|..||||||+|-.--..|||.+..|-. .-+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 5789999999888999999999999999999999998753 5677888764
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.77 E-value=0.0011 Score=62.18 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.5
Q ss_pred eEEEecccccccCcccHHHHHHHhc--ccccEEEeecCC
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l--~~~~rllLTgTP 466 (864)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555555555 466779999999
No 209
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.65 E-value=0.018 Score=58.10 Aligned_cols=58 Identities=22% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
+|.+-|.+++..+.. ...+-.+|.-..|+|||.....+...+... ..++++++|.+-.
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcHHH
Confidence 477899999987742 233456777899999998766655555554 3689999997654
No 210
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.58 E-value=0.00098 Score=74.93 Aligned_cols=61 Identities=34% Similarity=0.830 Sum_probs=45.5
Q ss_pred ccccccccC----Cc-eeecCC--CCCcccccccCCCCCCCCCCCcccCccCCCCcccccccccccccCccC
Q 002937 52 DSCQACGES----EN-LMSCDT--CTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (864)
Q Consensus 52 ~~C~~C~~~----~~-l~~C~~--C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~kil~~r~~p~~~~ 116 (864)
.-|.||.+. ++ |+.||+ |.-+.|..|. .+..+|.|.|||..|-...... -+.|.+.|-.++
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqeraa--rvrCeLCP~kdG 73 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERAA--RVRCELCPHKDG 73 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhhc--cceeecccCccc
Confidence 348889753 22 999996 9999999999 8899999999999998643221 244555665554
No 211
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.56 E-value=0.011 Score=70.55 Aligned_cols=126 Identities=10% Similarity=-0.013 Sum_probs=84.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcc
Q 002937 313 MGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (864)
Q Consensus 313 ~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (864)
.|+|||-.-+.++...+..+. .+||++| -++..|+..-|+..+++..+.++|+.....+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 499999999888888877653 6999999 578899999999999767888999876666544443110
Q ss_pred cCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc--cCccc-----HHHHHHHh-cccccEEEee
Q 002937 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL--KNKDS-----KLFSSLKQ-YSTRHRVLLT 463 (864)
Q Consensus 392 ~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l--kn~~s-----~~~~~l~~-l~~~~rllLT 463 (864)
......|+|-|...+-.-. -+..+|||||=|.- |...+ +-...++. ...-..++-|
T Consensus 237 -----------~~G~~~IViGtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred -----------hCCCCcEEEEcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 1234679999876552211 13468999999874 33221 11111111 2234567779
Q ss_pred cCC
Q 002937 464 GTP 466 (864)
Q Consensus 464 gTP 466 (864)
+||
T Consensus 301 aTP 303 (665)
T PRK14873 301 HAR 303 (665)
T ss_pred CCC
Confidence 999
No 212
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.48 E-value=0.0053 Score=67.67 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC-C-ceEEEecc
Q 002937 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (864)
Q Consensus 278 p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~-~-~~LIV~P~ 342 (864)
|-+.+-...+|-|.+-..-+......+++|+|-++.|+|||+.-++++.......+ . .-||-|..
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 33444467899999887777888899999999999999999998888765543332 2 45777763
No 213
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.48 E-value=0.01 Score=65.85 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=33.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEEeccccHHHHHHH
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~-~~~~~~LIV~P~sll~qW~~E 351 (864)
.|+--..|+|||+.++.++..+.. ......++++++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 466778999999999999998822 223477888887777664443
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.23 E-value=0.039 Score=65.87 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFAT 354 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~ 354 (864)
..|-+.|..+|.... ......++.-.+|+|||.+++.++..+...+. ++|+++|.+. +.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHh
Confidence 468899999997652 33467888999999999999998888776543 8999999654 4555555654
No 215
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.23 E-value=0.0067 Score=68.56 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=48.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER 350 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~ 350 (864)
..|-+-|..|+.+.. +...-.++--++|+|||.+...++..+...+ .++||.+|..+ +.|-..
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHH
Confidence 467889999998763 2335567888999999999988888887665 58999999654 455554
No 216
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.09 E-value=0.0038 Score=66.34 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=22.1
Q ss_pred eeeeeeecCCccccccccChH-HHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEK-EFLK 155 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~-~l~~ 155 (864)
.+|||||+|++..+|||+|++ .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 689999999999999999997 5544
No 217
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.98 E-value=0.0015 Score=45.72 Aligned_cols=34 Identities=35% Similarity=0.948 Sum_probs=19.6
Q ss_pred CceeecCCCCCcccccccCCCCCCCCCC-CcccCccC
Q 002937 61 ENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (864)
Q Consensus 61 ~~l~~C~~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~ 96 (864)
..|+.|+.|.-..|..|. .+...|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 348999999999999999 67777766 79999884
No 218
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.91 E-value=0.055 Score=65.70 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E 351 (864)
+..|.+-|.+++..+ ..++-.+|.-..|+|||.++-+++..+...+ ..++++++|...-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999876 3456789999999999988877777665543 2478888997766554433
No 219
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.86 E-value=0.022 Score=69.25 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=93.1
Q ss_pred ccccccccCCCCCCCCCCchHHHHHHHHHH--------------------HhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 269 KEFQQYEHSPEFLSGGSLHPYQLEGLNFLR--------------------FSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 269 ~~~~~~~~~p~~~~~~~L~~yQ~~~v~~l~--------------------~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
-.|..+..+-.+.+...|.+.|-.-+.-|. ..+..+.+++++...|+|||+.|=- +.+
T Consensus 1104 vsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~--a~l 1181 (1674)
T KOG0951|consen 1104 VSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAEL--ALL 1181 (1674)
T ss_pred cchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHH--Hhc
Confidence 344444444445555566666655443331 2235778899999999999987632 223
Q ss_pred hcCCCCceEEEeccccH-----HHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccc
Q 002937 329 FGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (864)
Q Consensus 329 ~~~~~~~~LIV~P~sll-----~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (864)
.....+++..++|...+ .-|..-|... .+..++...|.....-.+
T Consensus 1182 ~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl----------------------------- 1231 (1674)
T KOG0951|consen 1182 RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL----------------------------- 1231 (1674)
T ss_pred CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH-----------------------------
Confidence 34556789999998776 4588888877 477777777765432211
Q ss_pred cCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCccc
Q 002937 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (864)
Q Consensus 404 ~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s 445 (864)
..+-+|+|.|++.+.... .. -..++.|+||.|-+.....
T Consensus 1232 ~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1232 LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccCC
Confidence 135679999999885542 22 2457899999999976443
No 220
>PLN03025 replication factor C subunit; Provisional
Probab=95.77 E-value=0.13 Score=56.26 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~--~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|.+.+..|...... ..+.+|.-+.|+|||..+.+++..+...
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33444444333333 2467999999999999999998887543
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.48 E-value=0.12 Score=48.58 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~ 346 (864)
+...++.-++|+|||..+-.++..+... ..+++++.......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~ 60 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE 60 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhh
Confidence 6678899999999998877777666422 23555554444333
No 222
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.45 E-value=0.007 Score=76.06 Aligned_cols=179 Identities=25% Similarity=0.392 Sum_probs=95.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCc--HHHHHHHHHHHHhcC-CCCceEEEeccccHHHHHHHHHHHcCCCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlG--KTi~ai~~i~~l~~~-~~~~~LIV~P~sll~qW~~E~~~~~p~~~~ 361 (864)
.+.++|.....-.. .....+..++++.|+| ||+.+..+....... ...+.++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVL--NELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhh--hhhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 45566666542211 1222338889999999 898877666555443 3448899999888899999987653 1111
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc----ccccCCcce---eEEEe
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~----~~~l~~~~w---~~vIv 434 (864)
....-..... ........ ........++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~~~~-~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEGLRY-LLKQYDAY---------------------NPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhhhhh-hhhhhccc---------------------ccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000000 00000000 0000000033333333322 122233346 89999
Q ss_pred cccccccCcc---------cHHHHHHHhccc--c------cEEEeecCCCCCCHhHHHhhhhhcCCCCCCC
Q 002937 435 DEGHRLKNKD---------SKLFSSLKQYST--R------HRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (864)
Q Consensus 435 DEaH~lkn~~---------s~~~~~l~~l~~--~------~rllLTgTP~~n~~~el~~ll~~l~p~~~~~ 488 (864)
||+|.+.+.. ......+..... . ...++++||......+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 233333333221 1 2347899999988888887777777766655
No 223
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.41 E-value=0.034 Score=56.54 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
.+..+||-|.+.+..|... ..+.+.++-.-||-|||-..+-+++.++..+..=+-+|+|++++.|-.+-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 4568999999999888654 567899999999999999988888888888777788999999998877776543
No 224
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.24 E-value=0.12 Score=60.91 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEeccccH
Q 002937 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPLSTL 345 (864)
Q Consensus 288 ~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~sll 345 (864)
+.|+.++... ..+.-.+|.-..|+|||.++..++..+.... ..++++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998665 3467789999999999999888877765432 1368999997544
No 225
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.13 E-value=0.96 Score=52.44 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=47.6
Q ss_pred ceEEEEeccHHHHHHHHHHHhhCCCc-------EEEEeccCCHHHHHHHHHHhcCC---CCCceEEEeeccccccCcCCC
Q 002937 625 HRVLIYSQFQHMLDLLEDYLTFKKWQ-------YERIDGKVGGAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLA 694 (864)
Q Consensus 625 ~kvlIFsq~~~~ld~L~~~L~~~g~~-------~~~i~G~~~~~~R~~~i~~Fn~~---~~~~~v~Llst~a~~~GinL~ 694 (864)
.-|++|..+-..+..+.......|+- -+.+....+ -..+++.|... +.+.+.|-+--.-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 35788888888888888888765541 111111111 23455555421 123232333344468999998
Q ss_pred C--CCEEEEeCCCCC
Q 002937 695 T--ADTVIIYDSDWN 707 (864)
Q Consensus 695 ~--a~~VI~~d~~wn 707 (864)
+ +..||....|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 5 889999888874
No 226
>PRK04296 thymidine kinase; Provisional
Probab=95.08 E-value=0.056 Score=54.27 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
.++.-+||.|||..++.++..+...+ .+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46788999999999999888776543 46677655
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.25 Score=58.74 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=35.1
Q ss_pred ceeEEEecccccccCcc-cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCC
Q 002937 428 KWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKF 486 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~ 486 (864)
+|.++||||+|.|.+.. ..+.+.|.......+++|+.|-.+.-+.-|.+-+..+.-..+
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 57899999999996532 223333333345667888877655444455555544443333
No 228
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.81 E-value=0.094 Score=62.06 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccccHH
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLR 346 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~sll~ 346 (864)
..+.|++|+... ..++-.+|.-.+|+|||.++..++..+.... ..++++++|..--.
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHH
Confidence 458999998654 4566789999999999999888887775532 23678888975543
No 229
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.61 E-value=0.076 Score=56.31 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=21.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.+.+|.-++|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999998887766543
No 230
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=0.024 Score=63.87 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.4
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHH
Q 002937 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLR 346 (864)
Q Consensus 310 ade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~ 346 (864)
-+.+|+|||+++.++|.+++..+.+.+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHH
Confidence 367999999999999999999998899998874 4444
No 231
>PRK06526 transposase; Provisional
Probab=94.51 E-value=0.089 Score=55.32 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
+.+|+ ..+.+.+|..++|+|||..+.++...+...+. +++++ ....|.+++.
T Consensus 91 ~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 91 TLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred cCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 34566 56788999999999999999998887766543 44443 2345666554
No 232
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.23 Score=56.44 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.|..++..|......++ ..|+.-+.|+|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 34455555544444444 25899999999999999998887543
No 233
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.40 E-value=0.024 Score=66.59 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=63.2
Q ss_pred ccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcccccccccccccCccCCCCcccccccchh
Q 002937 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (864)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~kil~~r~~p~~~~~~~~~~~~~~~~~ 129 (864)
...-|.+|..++.+.+|+.|++.+|..|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 445678899999999999999999999999999999899999998863
Q ss_pred heeeeeeecCCccccccccChHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~ 152 (864)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 26799999999999999999873
No 234
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.35 E-value=0.17 Score=55.93 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|.+++..|...+..++ ..++.-+.|+|||..|..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677777766666 46789999999999999999988764
No 235
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.29 E-value=0.18 Score=59.75 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH----HHHHHHHHh
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ----SIAFLASLF 329 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~----ai~~i~~l~ 329 (864)
.++||-|+.-+..++.......+|+|-.++|+|||+. ++|+..++.
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k 69 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLK 69 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhh
Confidence 4679999999988889999999999999999999986 445555444
No 236
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.16 E-value=0.27 Score=54.21 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 293 ~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
.+.+|......+. +.++.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444444554 789999999999999999988876543
No 237
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.03 E-value=0.17 Score=47.04 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
+...+|.-++|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45678999999999999888877765443 356777776555443
No 238
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.89 E-value=0.21 Score=53.66 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=40.0
Q ss_pred cccCCCCCCCCCCch-HHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcC-CCCceEEEeccccH
Q 002937 274 YEHSPEFLSGGSLHP-YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGE-RISPHLVVAPLSTL 345 (864)
Q Consensus 274 ~~~~p~~~~~~~L~~-yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~-l~~~-~~~~~LIV~P~sll 345 (864)
+...+....|...+. +|.-|+..|.. ..-.=+.|.-.-|+|||+-|++...+ .... ...+++|.=|.--+
T Consensus 216 l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 216 LKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred cccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 333444455544443 88888877621 22334668889999999988766433 2222 23355555454433
No 239
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.75 E-value=0.37 Score=51.24 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 287 HPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
.+.+..+++.+......+. ..+|.-+.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455667777766555555 467899999999988877666553
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.53 Score=52.55 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=36.0
Q ss_pred ceeEEEecccccccCccc---HHHHHHHhccc--ccEEEeecCCCCCCHhHHHhhhhhcCC
Q 002937 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDA 483 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s---~~~~~l~~l~~--~~rllLTgTP~~n~~~el~~ll~~l~p 483 (864)
..++||||++.+...... .+...+..... ...|.|+||--++.+.+++.-...+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 478999999998764332 22233333322 355889999887888777766554443
No 241
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.59 E-value=0.78 Score=52.09 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.8
Q ss_pred ceeEEEecccccccCcccH---HHHHHHh--cccccEEEeecCCCCCCHhHHHhhhhhcCC
Q 002937 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s~---~~~~l~~--l~~~~rllLTgTP~~n~~~el~~ll~~l~p 483 (864)
.+++||||-+-+....... +...+.. ......++|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4789999998765432222 2222221 122456889999877778887777766554
No 242
>PRK08181 transposase; Validated
Probab=93.58 E-value=0.54 Score=49.83 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
+.+-|..++..+......+.+.+|.-++|+|||..+.++...+...+ .+++++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 55677777654422235778899999999999999988888776653 244444
No 243
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.43 E-value=0.52 Score=51.56 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.++|+|......+...-.-...-++..+.|+|||..|..++..+.-.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 46899988886665542223345678999999999999999998754
No 244
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.59 Score=54.37 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCC--Cc-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~--~~-~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|......+ .+ .|+.-+.|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344444554444433 23 4889999999999999998888643
No 245
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.69 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..||.-..|+|||..+..++..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488999999999999999998865
No 246
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.01 E-value=0.15 Score=54.62 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=26.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCC---CceEEEe
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 340 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~---~~~LIV~ 340 (864)
+.+.+|.-++|+|||..|.++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346789999999999999888777765432 3544444
No 247
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.74 Score=56.00 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~--~~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|...+..+ .+. |+.-+.|+|||..|..++..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 334444444444443 244 799999999999999999888653
No 248
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.93 E-value=0.38 Score=45.70 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=35.1
Q ss_pred EEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc--cccCcCCCC--CCEEEEeCCCC
Q 002937 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (864)
Q Consensus 652 ~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a--~~~GinL~~--a~~VI~~d~~w 706 (864)
..+.+.. ..+..++++.|+......-.+|+++.. .+||||++. +..||+.-.|+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3444433 335578899998643310124555554 899999985 78999988876
No 249
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.56 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
..|+..+.|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999887654
No 250
>CHL00181 cbbX CbbX; Provisional
Probab=92.77 E-value=0.19 Score=53.95 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
+.+.+|.-++|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457899999999999998888776554
No 251
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.76 E-value=1.4 Score=48.10 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
+.+|.-+.|+|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999998888877543
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.68 E-value=0.88 Score=47.37 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.+...+|.-+.|+|||-.+.++...+...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34567899999999998877777666543
No 253
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.51 E-value=1.2 Score=43.31 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERI 333 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~~~~ 333 (864)
|.+.+..|...+.+++ . -|+..+.|.||+..|..++..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5566666766666553 3 488889999999999999999876643
No 254
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.50 E-value=0.66 Score=47.78 Aligned_cols=29 Identities=24% Similarity=0.093 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.+...+|.-+.|+|||..+.++.......
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45578899999999999998888776543
No 255
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.48 E-value=2.9 Score=47.26 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=93.2
Q ss_pred ccHHHHHHH-HHHHHH--HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEee
Q 002937 607 SGKLQLLDK-MMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (864)
Q Consensus 607 s~Kl~~l~~-ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls 683 (864)
..++..+.+ +|+.+. ....++|||..+---.=.|..+|...+++++.++--++..+-.++-..|..+... ++|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 345555444 777776 3346899998766555668899999999999999999999999999999876544 45666
Q ss_pred cccc-ccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCC----CCcEEEEEEEeC
Q 002937 684 TRAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (864)
Q Consensus 684 t~a~-~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ----~~~V~Vy~lv~~ 735 (864)
-|+- =.=..+.++.+||+|.+|-+|.-|...+.-...-.+ .....+.-|.++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 6653 345667889999999999999999888755544332 234555556655
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.59 Score=55.01 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 292 ~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..+..|...+..++ ..|+....|+|||..|.+++..+..
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444444443 4489999999999999998888754
No 257
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=1 Score=50.29 Aligned_cols=41 Identities=24% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHh
Q 002937 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~ 329 (864)
-|...+..+...+..++ + .++.-+.|+|||..|-+++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 35556666655555543 3 48999999999999999988875
No 258
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.17 E-value=0.81 Score=54.35 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|...+..++ + .|+.-+.|+|||..|..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444555555555544 3 4789999999999999998887653
No 259
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.14 E-value=0.87 Score=52.73 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
-|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34555555555445543 67899999999999999998888643
No 260
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=91.85 E-value=1.2 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~--~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
+|...|+-|...... ..+-++.-+.|+|||-++++|...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788888777655544 345688999999999999999999865
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.74 E-value=1.4 Score=48.72 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.5
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
+...|.-.+|+|||.++..++..+...+. +++++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 34567889999999998888877765443 4554444
No 262
>PF13245 AAA_19: Part of AAA domain
Probab=91.69 E-value=0.49 Score=39.56 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEeccccHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLR 346 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~---~~~~~LIV~P~sll~ 346 (864)
+.-.++.-..|+|||.+++..+..+... ...++||++|.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA 55 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH
Confidence 3445668999999999998888888742 245899999976553
No 263
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.68 E-value=0.094 Score=59.66 Aligned_cols=47 Identities=32% Similarity=0.805 Sum_probs=40.1
Q ss_pred cccccccccCCceeecCCCCCcccccccCCCCC-CCCCCCcccCccCC
Q 002937 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-APPSGSWRCPECVS 97 (864)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~-~~p~~~W~C~~C~~ 97 (864)
-..|..|..+|++++|+.|+.++|..|..+++. +.+.+.|.|..|-.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 467999999999999999999999999999986 33456788888764
No 264
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.64 E-value=1.3 Score=51.40 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|......++ ++ |+..+.|+|||..|.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3344444544444443 23 789999999999999999888643
No 265
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=2 Score=46.66 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.4
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
.++|+|......+......++ ..++..+.|+||+..|.+++..+.-..
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999888877765554 457899999999999999999887654
No 266
>PRK08116 hypothetical protein; Validated
Probab=91.44 E-value=1.5 Score=46.69 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
+.+.+|.-++|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHH
Confidence 44688999999999999999999987663 466555434444333
No 267
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.41 E-value=0.11 Score=39.65 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.7
Q ss_pred ccccccccc----CCceeecCCCCCcccccccCC
Q 002937 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (864)
Q Consensus 51 ~~~C~~C~~----~~~l~~C~~C~~~~H~~Cl~p 80 (864)
...|.+|+. +++++.|..|+..||-.|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 357999995 577999999999999999954
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=91.29 E-value=1.2 Score=48.82 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=30.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc----ccHHHHHHHHH
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL----STLRNWEREFA 353 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~----sll~qW~~E~~ 353 (864)
-.++.-..|+|||.++..++..+...+. +++++..- ....||..-..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHHH
Confidence 3567889999999988887777765443 55555432 33355544333
No 269
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=1.4 Score=51.90 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|...+..|...+..++ + .|+.-..|+|||..|..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5555555655555543 3 478999999999999999988864
No 270
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.25 E-value=1.9 Score=49.73 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 292 ~~v~~l~~~~~~~---~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..+..|...+..+ +..|+.-..|+|||..|..++..+..
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 4444454444443 35789999999999999888877754
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.24 E-value=1.6 Score=47.67 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=24.6
Q ss_pred eeEEEecccccccCcc--cHHHHHHHhcccccEEEeecCCCC
Q 002937 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQ 468 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~--s~~~~~l~~l~~~~rllLTgTP~~ 468 (864)
.++||+||+|++.... ..+...+.......++++|++...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 4689999999983322 222233444456667888886543
No 272
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.12 E-value=1.3 Score=44.63 Aligned_cols=28 Identities=25% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
+-.+.|++..+|.|||..+.+++..|+.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3457899999999999999888888754
No 273
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=2.1 Score=48.42 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|...+.+++ ..|+..+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555555555542 36789999999999999999888653
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.93 E-value=1.7 Score=51.46 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|-..++.|...+..++ ..||.-..|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4445555555555443 56889999999999999999988654
No 275
>PF13173 AAA_14: AAA domain
Probab=90.93 E-value=1.6 Score=40.50 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
++-.+|.-..|+|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45568888999999998888777765
No 276
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.91 E-value=2.4 Score=50.52 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|...+..++ ..||.-..|+|||..|..++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444444444433 45899999999999999988887543
No 277
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.72 E-value=1.7 Score=50.78 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 291 LEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 291 ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..++..|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 22 ~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 22 QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444444444433 3578999999999999999988864
No 278
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.69 E-value=0.53 Score=47.42 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
.+|.-.+|.|||.++.-+++++... ..++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 4678899999999998888888766 345555554
No 279
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.68 E-value=1.7 Score=47.74 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.|...+..|...+..++ ++ ++..+.|.|||..|..++..+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 45566666666665543 44 889999999999999999988654
No 280
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.61 E-value=1.7 Score=50.49 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|......++ +. ++.-+.|+|||..|.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455555554444443 33 899999999999999998888643
No 281
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=1.6 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999988887754
No 282
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=90.40 E-value=1.9 Score=52.72 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=43.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~ 346 (864)
+..|.+-|++++..+. ..++-.+|....|+|||.+.-+++..+... ..++++++|.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~-g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA-GYRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEeCcHHHH
Confidence 4578999999998763 224567899999999998876665555443 34788889976543
No 283
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=90.36 E-value=0.071 Score=60.71 Aligned_cols=96 Identities=26% Similarity=0.453 Sum_probs=57.5
Q ss_pred ccccccccccCC-----ceeecCCCCCcccccccCCCCCCC-CCCCcccCccCCC-----CcccccccccccccCccCCC
Q 002937 50 KDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP-----LNDIDKILDCEMRPTVAGDS 118 (864)
Q Consensus 50 ~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~-----~~~~~kil~~r~~p~~~~~~ 118 (864)
.+.+|.+|+..| .|+.|..|...||.+|+.--+... -.+.|.||.|+.- .++..+.+-|.-. +.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~c-----Dv 91 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRC-----DV 91 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccccc-----cc
Confidence 457788888654 399999999999999996444332 2344999999842 2344555544211 11
Q ss_pred Cccc----ccccchhheeeeeeecCCccccccccCh
Q 002937 119 DVSK----LGSKQIFVKQYLVKWKGLSYLHCTWVPE 150 (864)
Q Consensus 119 ~~~~----~~~~~~~~~eylVKw~~~S~~h~~W~~~ 150 (864)
.+.- ...+...--.|+.||.-+=+.|..=+|.
T Consensus 92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred cccccccCCccccccCcccccHHHHhhhhccccccc
Confidence 1110 0111122347888888766666665554
No 284
>PHA02533 17 large terminase protein; Provisional
Probab=90.32 E-value=1.1 Score=52.38 Aligned_cols=55 Identities=20% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCCCceEEEecc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERISPHLVVAPL 342 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l-~~~~~~~~LIV~P~ 342 (864)
..|.|+|.+.+..+. .++-.++.-.=..|||..+.+++.++ .......+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 468999999887662 23444666678899998876655433 22333477788884
No 285
>PRK08727 hypothetical protein; Validated
Probab=90.31 E-value=1.3 Score=46.10 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
...+|..++|+|||-.+.++...+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999988888777766553
No 286
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.25 E-value=2.6 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.||.-..|+|||..+..+...|..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 579999999999999999988864
No 287
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.19 E-value=2.4 Score=50.48 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.|...+..|...+..++ + .|+.-+.|+|||..+..++..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35556666655555543 2 388999999999999999988753
No 288
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=90.16 E-value=0.14 Score=48.58 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=33.5
Q ss_pred ccccccc------CCceeecCCCCCcccccccCCCCC------CCCCCC--cccCccCCC
Q 002937 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLK------APPSGS--WRCPECVSP 98 (864)
Q Consensus 53 ~C~~C~~------~~~l~~C~~C~~~~H~~Cl~p~~~------~~p~~~--W~C~~C~~~ 98 (864)
.|.+|+. .|.|+.|.+|..+||..||.|-.. .+..++ -.|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 4778853 245999999999999999988653 233344 478888753
No 289
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=90.10 E-value=1.2 Score=53.80 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHcCCCeEEE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~~~~ 363 (864)
.|-.-|+.|+-... .......|++ -+|+|||.+...++..|...+. .+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~L--~aedy~LI~G-MPGTGKTTtI~~LIkiL~~~gk-kVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKAL--AAEDYALILG-MPGTGKTTTISLLIKILVALGK-KVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHHH--hccchheeec-CCCCCchhhHHHHHHHHHHcCC-eEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 68889999974331 1333444555 5799999998888888877654 5555554 566676655555442 11 22
Q ss_pred EecChHHH-HHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccC
Q 002937 364 YVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 364 ~~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn 442 (864)
--|....- ..++++... .....+ -...-........||.+|--.+. ...+....||++|||||-.+--
T Consensus 742 RLG~~~kih~~v~e~~~~-~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLT-NETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcc-cccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 22333221 222222210 000000 00000001123346666543332 3345556799999999976532
Q ss_pred cccHHHHHHHhcccccEEEeecCCCC
Q 002937 443 KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (864)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTP~~ 468 (864)
+ -.|..+....+..|-|-+.|
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred c-----hhhhhhhhcceEEEeccccc
Confidence 2 23444556778888887654
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.02 E-value=1.4 Score=49.07 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=31.9
Q ss_pred CchHHHHHHHH-HHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 286 LHPYQLEGLNF-LRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 286 L~~yQ~~~v~~-l~~~~~--~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
=|..|++.+.. +..... ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37788877744 433222 2356889999999999999888877653
No 291
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.60 E-value=1.6 Score=50.30 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEeccccH
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~sll 345 (864)
+..+|..+.|+|||..+-++...+....++ .++.+.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 357899999999999988888877665433 34444333333
No 292
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.37 E-value=1.7 Score=48.35 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=36.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
..+.-.+|.-++|.|||..++.++..+...+ +++|+|.-.....|......+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHHHH
Confidence 4455678899999999999988887765542 478888776555555444433
No 293
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.26 E-value=0.47 Score=55.85 Aligned_cols=167 Identities=16% Similarity=0.218 Sum_probs=96.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc-cHHHHHHH-HHHHcCCCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWERE-FATWAPQMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s-ll~qW~~E-~~~~~p~~~~ 361 (864)
....|||.+-++.|... .-..+.+.-..-+|||..++.++.+.....++|+|+|.|.. ....|..+ |...+
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999988766221 24567788888999999999999988888889999999964 44556543 43322
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lk 441 (864)
..++..+..+... . .+..+..+... ....-.+.++...+ ...|.....+++++||..++-
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~k--~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILYK--RFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhhe--ecCCCEEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111110 0 00000000000 00111233333222 345777788999999999883
Q ss_pred ----CcccHHH---HHHHhcccccEEEeecCCCCCCHhHHHhh
Q 002937 442 ----NKDSKLF---SSLKQYSTRHRVLLTGTPLQNNLDELFML 477 (864)
Q Consensus 442 ----n~~s~~~---~~l~~l~~~~rllLTgTP~~n~~~el~~l 477 (864)
+.+.-.. +....+....++++..||.......+..+
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 2233333 33344456788999999976644444433
No 294
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.22 E-value=2 Score=47.79 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
-|..++..|...+..++ .-++.-+.|+|||..|.+++..++...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 35566666666666654 467899999999999999999998543
No 295
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=88.98 E-value=2.4 Score=52.93 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=41.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~ 346 (864)
|..|.+-|.++|..+. ..+.-.+|.-..|+|||.+.-+ +..+.......++.++|.....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHHH
Confidence 4579999999998663 3234578899999999987444 3333333334788888876543
No 296
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.97 E-value=2.8 Score=49.77 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|...+..++ +. |+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4555556655555543 34 889999999999999998888653
No 297
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=88.93 E-value=0.25 Score=54.24 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=36.6
Q ss_pred ccccccccccc-----CCceeecCCCCCcccccccCCCC-CCCC-------CCCcccCccCCC
Q 002937 49 AKDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPP-------SGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~-----~~~l~~C~~C~~~~H~~Cl~p~~-~~~p-------~~~W~C~~C~~~ 98 (864)
..-.+|.||-. .|+++.||.|+-..|-.|..--- ..+| ...|||..|...
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 33458999973 36699999999999999985331 1233 246999999864
No 298
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.89 E-value=6.5 Score=46.19 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=91.8
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHH-H
Q 002937 535 ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-L 613 (864)
Q Consensus 535 ~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~-l 613 (864)
.++..||..|+...+.|....... .-+++|-| + + + .|||-.+ +
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~------------~~M~RLlQ---------G---D-----------V-GSGKTvVA~ 301 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASP------------VPMNRLLQ---------G---D-----------V-GSGKTVVAL 301 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCc------------hhhHHHhc---------c---C-----------c-CCCHHHHHH
Confidence 466889999999888876653210 11222221 0 0 0 4677554 4
Q ss_pred HHHHHHHHHcCceEEEEecc----HHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecccc-c
Q 002937 614 DKMMVKLKEQGHRVLIYSQF----QHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-G 688 (864)
Q Consensus 614 ~~ll~~l~~~g~kvlIFsq~----~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~-~ 688 (864)
..++. ..+.|.++.+...- ..+.+-+.++|...|+++..++|++...+|.++.++..++..+ +++.|.|+ -
T Consensus 302 laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQ 377 (677)
T COG1200 302 LAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQ 377 (677)
T ss_pred HHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhh
Confidence 44443 45668888888765 3456778888888899999999999999999999999776555 78899995 7
Q ss_pred cCcCCCCCCEEEEeCC
Q 002937 689 LGINLATADTVIIYDS 704 (864)
Q Consensus 689 ~GinL~~a~~VI~~d~ 704 (864)
..+++...-.||+=+.
T Consensus 378 d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 378 DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cceeecceeEEEEecc
Confidence 7888888888887543
No 299
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.87 E-value=1.9 Score=48.98 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEe
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~ 340 (864)
..+|.-+.|+|||..+-++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46799999999999988888877665433 455543
No 300
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.85 E-value=2.8 Score=50.09 Aligned_cols=43 Identities=19% Similarity=0.044 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.|...+..|...+..++ ..|+..+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34555555655555543 45889999999999999999988653
No 301
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.78 E-value=4.7 Score=47.47 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecc-ccHHHHHHH----HHHHcCCCeEEEEecChHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~-sll~qW~~E----~~~~~p~~~~~~~~g~~~~r~~i~~ 376 (864)
+.+-.+..-+==-|||..+.+.+..+.... .-.+++++|. ++...--++ +++|+|...+....|. .+ .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 344455555777899988776666555443 3489999994 444444444 4556654333222221 00 0
Q ss_pred hhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcccHHHHHH--Hhc
Q 002937 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL--KQY 454 (864)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l--~~l 454 (864)
++ ++.. .+..+...|- .....++...++++||||||.++... ....+ ..-
T Consensus 327 i~--f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~ 378 (738)
T PHA03368 327 FS--FPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQ 378 (738)
T ss_pred EE--ecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhc
Confidence 00 1000 0112333211 23345666789999999999998622 22222 112
Q ss_pred ccccEEEeecC
Q 002937 455 STRHRVLLTGT 465 (864)
Q Consensus 455 ~~~~rllLTgT 465 (864)
.....|.+|.|
T Consensus 379 ~n~k~I~ISS~ 389 (738)
T PHA03368 379 TNCKIIFVSST 389 (738)
T ss_pred cCccEEEEecC
Confidence 34455777755
No 302
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.76 E-value=5 Score=42.82 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=28.4
Q ss_pred cccCCcceeEEEecccccc-cCcccHHHH---HHHhccccc--EEEeecCC
Q 002937 422 ASLKPIKWQCMIVDEGHRL-KNKDSKLFS---SLKQYSTRH--RVLLTGTP 466 (864)
Q Consensus 422 ~~l~~~~w~~vIvDEaH~l-kn~~s~~~~---~l~~l~~~~--rllLTgTP 466 (864)
..+...+..++||||.|++ .+...+... +++.+.... -+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4556677889999999996 444444333 344443333 36677886
No 303
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.57 E-value=1.1 Score=51.77 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=73.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEeccccHH-----HHHHHHHHHcCCCeEEEEecChHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLR-----NWEREFATWAPQMNVVMYVGTSQARNIIR 375 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~sll~-----qW~~E~~~~~p~~~~~~~~g~~~~r~~i~ 375 (864)
+++-.+.|. +=--|||...+++|+-++..-.+ .+..|+...-+. .-...+.+|+|.-+++.-.|+.
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t------- 272 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV------- 272 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE-------
Confidence 344445554 66779999999998888875555 888888843332 2344467899876553221110
Q ss_pred HhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcc
Q 002937 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (864)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~ 455 (864)
+.-..+ ..+..++..| ....+.++.-.|++++|||||-++...-...--+...+
T Consensus 273 ---------------------I~~s~p-g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 273 ---------------------ISIDHR-GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred ---------------------EEEecC-CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 000000 0111122222 12345667778999999999999754333223333334
Q ss_pred cccEEEeecC
Q 002937 456 TRHRVLLTGT 465 (864)
Q Consensus 456 ~~~rllLTgT 465 (864)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 4455666655
No 304
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.38 E-value=1.8 Score=44.60 Aligned_cols=59 Identities=27% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH------HHHHHHH
Q 002937 293 GLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFA 353 (864)
Q Consensus 293 ~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~------qW~~E~~ 353 (864)
++.-+......++ -+.+.-++|+|||+..=+++..+... ...+|+.|+.++. -|..++.
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhc
Confidence 3333333334445 45678899999999887555554322 2455788877663 3555554
No 305
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=88.30 E-value=3.1 Score=49.09 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 288 ~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
|+=+.-|+.+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|.
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~ 225 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQR 225 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCC
Confidence 44455566666666676676666 6899999887666555554222478999994
No 306
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.26 E-value=3.2 Score=45.30 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
++|+|...-..|...+.+++ .-++.-+.|+||+..|.+++..+.-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888888777777666644 34578999999999999999988764
No 307
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.19 E-value=3.5 Score=46.48 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=31.3
Q ss_pred chHHHHHHHH-HHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 287 HPYQLEGLNF-LRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 287 ~~yQ~~~v~~-l~~~~~--~~~~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
|+-|++.+.- +..... ...+.+|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 5556555533 322222 345689999999999999988888775543
No 308
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.13 E-value=2.2 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~ 327 (864)
.-.+.||.-++|+|||..|-.+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999877555543
No 309
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.11 E-value=3.7 Score=47.51 Aligned_cols=42 Identities=26% Similarity=0.155 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhc
Q 002937 289 YQLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~ 330 (864)
-|...+..|......++ ++ ++.-+.|+|||..|..++..+..
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34455555655555543 33 67999999999999888887753
No 310
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=88.06 E-value=0.88 Score=43.30 Aligned_cols=34 Identities=35% Similarity=0.904 Sum_probs=26.3
Q ss_pred eeecCCCCCcccccccCCCCCCCC------------------CCCcccCccC
Q 002937 63 LMSCDTCTYAYHAKCLVPPLKAPP------------------SGSWRCPECV 96 (864)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~~~~~p------------------~~~W~C~~C~ 96 (864)
|++|..|.++||+.+|.|+....+ ..+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 889999999999999977642211 2369999984
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.03 E-value=2 Score=49.35 Aligned_cols=47 Identities=15% Similarity=-0.030 Sum_probs=30.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEeccccHHHHHHH
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWERE 351 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~sll~qW~~E 351 (864)
.+.+|.-++|+|||..+-++...+.....+ .++.+.+...+......
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 457799999999998887777776654333 55555554444333333
No 312
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.94 E-value=1.8 Score=45.58 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
.-.++..+.-+...+.++.+.+|.-.+|+|||..|+|+...+. ....+++++.-+.++.+.+..+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 3344444443444446888999999999999999999999998 33347777766666666666554
No 313
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=87.27 E-value=1 Score=48.83 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccccH
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~sll 345 (864)
|.+-|..+|++ ..+..++-...|+|||.+.+.-+.++...+ +..+|+++++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888864 356666667799999999988888877654 3478999987654
No 314
>PRK04132 replication factor C small subunit; Provisional
Probab=87.15 E-value=2.8 Score=51.45 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=33.3
Q ss_pred ceeEEEecccccccCcc-cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhc
Q 002937 428 KWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL 481 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l 481 (864)
++.++|+||+|++-... ..+.+.+.......+++|+.++...-+.-|.|-+..+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i 684 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 684 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEE
Confidence 46799999999995322 2233333333467788888887655544555544444
No 315
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.08 E-value=4.9 Score=46.88 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=72.7
Q ss_pred hcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh-CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEee
Q 002937 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (864)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls 683 (864)
..|||-.....++......|.++||.+........+.+.|.. .|.++..++|.++..+|.+...+...++.. +++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 469999998888888888899999999998887777777754 377899999999999998877766554333 5777
Q ss_pred ccccccCcCCCCCCEEEEeCC
Q 002937 684 TRAGGLGINLATADTVIIYDS 704 (864)
Q Consensus 684 t~a~~~GinL~~a~~VI~~d~ 704 (864)
|+..- =.-+.....||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 76532 234566777777653
No 316
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.95 E-value=0.82 Score=45.33 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=32.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
.++.|.+|..++|+|||..|.+++..+...+ .+++++.- ..+.++++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~----~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITA----SDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH----HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeec----Cceecccc
Confidence 5678899999999999999999998888744 35666543 33444554
No 317
>PRK11054 helD DNA helicase IV; Provisional
Probab=86.88 E-value=2.9 Score=50.46 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=57.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccccHHHHHHH-HHHHcC--
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~sll~qW~~E-~~~~~p-- 357 (864)
..|.+-|.++|.. ..++.++....|+|||.+.++-+.++...+ +..+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4589999999852 234456666799999999999999888643 3379999998777776665 555553
Q ss_pred CCeEEEEecChHHHHHHHHh
Q 002937 358 QMNVVMYVGTSQARNIIREY 377 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~ 377 (864)
++.+..||+ -...+++..
T Consensus 269 ~v~v~TFHS--lal~Il~~~ 286 (684)
T PRK11054 269 DITARTFHA--LALHIIQQG 286 (684)
T ss_pred CcEEEeHHH--HHHHHHHHh
Confidence 233333433 333445443
No 318
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.72 E-value=6.4 Score=42.80 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
.++|+|...-..+...+..++ .-++..+.|+||+..|..++..+.-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578899888877776665554 457889999999999999999887543
No 319
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=86.61 E-value=0.53 Score=57.79 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=23.1
Q ss_pred eeeeeeecCCccccccccChHHHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
.+|||||+|.+|-.|||+.++.+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 7999999999999999999987764
No 320
>PRK05642 DNA replication initiation factor; Validated
Probab=86.49 E-value=7 Score=40.59 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=22.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
...+|.-+.|+|||--+-++...+...+ ..++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~-~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEee
Confidence 4567999999999977666665554332 2444433
No 321
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.34 E-value=4.9 Score=44.17 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 286 LHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
++|+|...-+.|.....+-. ..++..+.|.|||..|..++..+.-..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887766655433322 445789999999999999999887643
No 322
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.30 E-value=6.7 Score=43.58 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P 341 (864)
..+...+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 446677899999999999998888765433 3335555554
No 323
>PRK06893 DNA replication initiation factor; Validated
Probab=86.20 E-value=4.6 Score=41.77 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
..+|.-+.|+|||-.+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999988888777765543
No 324
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.18 E-value=3.7 Score=45.85 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceeEEEecccccccCccc---HHHHHHHhcc-cccEEEeec--CCCC
Q 002937 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG--TPLQ 468 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s---~~~~~l~~l~-~~~rllLTg--TP~~ 468 (864)
.-++++||..|.+.+... .++-.+..+. ....|++|+ +|-.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 357899999999877643 3333344443 344899998 6643
No 325
>PRK04195 replication factor C large subunit; Provisional
Probab=86.13 E-value=6.5 Score=45.73 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=28.7
Q ss_pred CchHHHHHH-HHHHHhhcC---CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 286 L~~yQ~~~v-~~l~~~~~~---~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.++.+...+ .|+ ..|.+ ....+|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 344555554 444 33433 4678999999999999887777765
No 326
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=86.05 E-value=4.8 Score=38.17 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=39.3
Q ss_pred EEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCC--CCEEEEeCCCC-Ccc
Q 002937 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW-NPH 709 (864)
Q Consensus 652 ~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~--a~~VI~~d~~w-np~ 709 (864)
..+-| .+..+...+++.|...... .+|+++...+||||++. +..||+.-.|+ ||.
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 33434 3344678899999865432 36777777999999985 78999999887 444
No 327
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.95 E-value=5.4 Score=47.20 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.8
Q ss_pred HHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 294 v~~l~~~~~~~---~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
+..|...+.++ ...|+.-+.|+|||..|..++..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44444444443 34567999999999999999988864
No 328
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=85.91 E-value=0.29 Score=41.25 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=29.8
Q ss_pred ccccccCCc---eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 54 C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
|..|.-+|+ ++.+. |...||+.|+..-+... .+.=.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 444555555 55555 99999999998777653 233489999853
No 329
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.63 E-value=8.8 Score=38.19 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
...++..+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999888654
No 330
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.62 E-value=8.5 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.|+.-+.|+|||..|-.++..+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 467999999999999888887754
No 331
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.50 E-value=8.9 Score=45.01 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|...+..|......++ + .|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444434332 3 489999999999999998888754
No 332
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.43 E-value=3.7 Score=51.04 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~--~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|..-++.+...+ ....+.||.-++|+|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 444466665433 33568899999999999998777777644
No 333
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=85.34 E-value=0.58 Score=58.69 Aligned_cols=50 Identities=40% Similarity=1.127 Sum_probs=43.5
Q ss_pred cccccccccccCCc--eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 49 AKDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.....|..|.++.. ++.|+.|...||..|..|++..+|.++|.|+.|...
T Consensus 153 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34567999997764 349999999999999999999999999999999864
No 334
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.24 E-value=5.5 Score=47.93 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|..++..|......++ + .|+.-+.|.|||..|-.++..+..
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3444444544444433 3 478999999999999999888754
No 335
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.23 E-value=7.1 Score=41.39 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-c---ccHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWERE 351 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~---sll~qW~~E 351 (864)
.+....+.-..|.|||..+..++..+...+ .++.+|.. . ..+.||...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHH
Confidence 345667888899999988777766664432 34544444 2 345566543
No 336
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.18 E-value=4.7 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=26.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
...+++-.+|+|||.++..++..+...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3467889999999999988888877654434444333
No 337
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.16 E-value=8.3 Score=45.45 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 292 ~~v~~l~~~~~~~---~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
..+..|...+.++ +..|+.-+.|+|||..|.+++..+...
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444443 235789999999999999999988643
No 338
>PRK05580 primosome assembly protein PriA; Validated
Probab=85.14 E-value=6.9 Score=47.49 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh-CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeec
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (864)
.|||......++......|.++||.+........+.+.|.. .|.++..++|+++..+|.+...+...+... ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 68999888888877777899999999998887777777754 378899999999999998887777654433 57777
Q ss_pred cccccCcCCCCCCEEEEeCC
Q 002937 685 RAGGLGINLATADTVIIYDS 704 (864)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~ 704 (864)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7432 245667777877664
No 339
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.89 E-value=5.2 Score=47.20 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.|+.-+.|+|||..|.+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 579999999999999999988764
No 340
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.82 E-value=0.44 Score=47.02 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCcEEEccHHHHHhccc--cc--CCcceeEEEecccccccC
Q 002937 405 IKFDVLLTSYEMINLDSA--SL--KPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 405 ~~~~vvitty~~~~~~~~--~l--~~~~w~~vIvDEaH~lkn 442 (864)
...+|+|++|..+..... .+ ...+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999998865422 12 123457899999999854
No 341
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.59 E-value=4.4 Score=48.74 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=85.9
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHH
Q 002937 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (864)
Q Consensus 536 v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ 615 (864)
....+++.|...+..+.... -+.+++|+.+.. .|||.++..+
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~GvT---------------GSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGVT---------------GSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCCC---------------CCcHHHHHHH
Confidence 35678888888888765431 235677777654 7999999999
Q ss_pred HHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 616 ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
++.....+|+.+||...-+.....+.+.|..+ |.++..++++.+..+|...-.+...+... +++.|++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVIGtRS 305 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVIGTRS 305 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEEEech
Confidence 99999999999999998887777666666543 78999999999999999988888665443 5666666
No 342
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.56 E-value=8.4 Score=37.26 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=37.8
Q ss_pred cccCCcceeEEEecccccccCcc----cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhc
Q 002937 422 ASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL 481 (864)
Q Consensus 422 ~~l~~~~w~~vIvDEaH~lkn~~----s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l 481 (864)
..+..-.+|+||+||.=..-+.+ ......+..-....-+.|||--.+..+.|+..+..-+
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm 152 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEM 152 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeec
Confidence 34455679999999987663322 3455555554555679999986655555555544433
No 343
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.53 E-value=6.4 Score=46.87 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|...+..|...+.+++ .-|+..+.|+|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5566666666555542 3578999999999999999988865
No 344
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.53 E-value=5.2 Score=45.84 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=26.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEec
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P 341 (864)
...+|.-++|+|||..+-++...+.....+ .++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999888888777665433 4555543
No 345
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.50 E-value=1.5 Score=42.85 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=39.1
Q ss_pred ccccCCcceeEEEecccccccCcc----cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcC
Q 002937 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD 482 (864)
Q Consensus 421 ~~~l~~~~w~~vIvDEaH~lkn~~----s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~ 482 (864)
...+..-.||+||+||.-..-+.+ ......+..-+...-+.|||.-.+..+.|+..++.-+.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~ 155 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMR 155 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeec
Confidence 344556689999999987654422 34445555445556799999866555555555554443
No 346
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.39 E-value=9.4 Score=46.04 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=67.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHH----HHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLL----EDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L----~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.|||-....-.+-.....|.+++|.+.....+..+ ..++...|+++..++|+++..+|...++...++... ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 57887654433333345688999999887665544 445555689999999999999999999888765444 45
Q ss_pred eeccc-cccCcCCCCCCEEEEeCCC
Q 002937 682 LSTRA-GGLGINLATADTVIIYDSD 705 (864)
Q Consensus 682 lst~a-~~~GinL~~a~~VI~~d~~ 705 (864)
++|.+ ....+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 55555 3456677777777765543
No 347
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=84.26 E-value=1 Score=54.65 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=71.2
Q ss_pred cCCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCCceEEEeccc-cH----HHHHHHHHHHcCCCeEEEEecChHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPLS-TL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~~~~~LIV~P~s-ll----~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~ 375 (864)
....+.++.+.+|.|||+.+- +....+...+.+++.+|+|.. ++ ..|..-+.. |+++++-..|.....
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC----
Confidence 456678899999999999884 444444445556999999954 33 446554432 466666665543221
Q ss_pred HhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCc----ceeEEEecccccccCc
Q 002937 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (864)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~----~w~~vIvDEaH~lkn~ 443 (864)
.......+++|||++............ .+..+|+||.|-++..
T Consensus 1015 -------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112345789999999875443322222 2456999999988653
No 348
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.19 E-value=8 Score=38.54 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=40.2
Q ss_pred ccccCCcceeEEEecccccccCcc----cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCC
Q 002937 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (864)
Q Consensus 421 ~~~l~~~~w~~vIvDEaH~lkn~~----s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p 483 (864)
...+..-.|++||+||.-..-+.+ ......+..-+..--+.|||--.+..+.|+..++.-+.+
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 444556789999999986654432 344445544445567999998665555565555554443
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.16 E-value=5.3 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 002937 305 THVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.+.||.-+.|+|||..|-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887766543
No 350
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=83.81 E-value=0.33 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred chhhhHhhhhcCCccceeeeeecccc
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~ 217 (864)
+.+|+||+..+..|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 56889999888889999999999975
No 351
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.71 E-value=13 Score=44.14 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|...+..|......++ + .|+.-+.|+|||..|..++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3344444444434432 3 478999999999999999988764
No 352
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.53 E-value=6 Score=46.63 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEeccccHHHH
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~sll~qW 348 (864)
..+|.-..|+|||.-+-++...+.....+ .++.+.....+..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 47889999999998887877777653323 45555444433333
No 353
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=83.42 E-value=0.22 Score=59.96 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=42.5
Q ss_pred ccccccccccCCceeecCC-CCCcccc-cccCCC--CCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~-C~~~~H~-~Cl~p~--~~~~p~~~W~C~~C~~~~ 99 (864)
..+-|.+|+..+.+++|++ |+..||+ .||+-. -..+|++-|+|++|....
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 4467999999999999987 9999999 999833 367899999999998644
No 354
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.41 E-value=0.36 Score=49.24 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=34.7
Q ss_pred cccccccccC---------CceeecCCCCCcccccccCCCCC---CCCCCCcccCccC
Q 002937 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLK---APPSGSWRCPECV 96 (864)
Q Consensus 51 ~~~C~~C~~~---------~~l~~C~~C~~~~H~~Cl~p~~~---~~p~~~W~C~~C~ 96 (864)
...|..|-++ ..+++|..|..++|++|+.-+.. .+....|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3457777654 23999999999999999965542 2346789999986
No 355
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.94 E-value=10 Score=41.62 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.++|+|...-..+...+..++ .-++.-+.|+||+..|.+++..+.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 468888888877777766544 34689999999999999999998754
No 356
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=82.93 E-value=4.6 Score=46.24 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
...+|..+.|+|||..+-++...+...+ .+++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeH
Confidence 4578999999999998888888776542 35555543
No 357
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.87 E-value=2.3 Score=48.91 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=44.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEeccccHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-----~~~~LIV~P~sll~qW~~E 351 (864)
++.+-|-+.++. .+++-.|+.-..|+|||..|+-=+++|+... .+|+||+.|+.++......
T Consensus 212 TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 212 TIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 455566665532 4555667888999999999988888886543 3489999999988665543
No 358
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=82.77 E-value=1.6 Score=40.22 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
+|.-+.|+|||..+-.++..+ ..+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL----GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc----ccccccccccccc
Confidence 677899999999988877775 1356666655554
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=82.68 E-value=3.7 Score=47.09 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=38.9
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
+..+.-.+|.-++|.|||..++.++..+... ..++|.+.-.....|......++
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHHc
Confidence 3455567899999999999998888876533 34788888766666665544443
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.37 E-value=15 Score=42.50 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEe
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVA 340 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~ 340 (864)
.++...|.-.+|.|||.++..++..+...+ ...+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 455566778999999999877777665443 23455443
No 361
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.95 E-value=8.8 Score=36.56 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
.+|.-+.|+|||..+..++..+... .++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcc
Confidence 3677789999999998888877553 346666665433
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=81.75 E-value=12 Score=41.63 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=34.9
Q ss_pred eeEEEecccccccCcccHHHHHHHhc-----ccccEEEeecCCCCCCHhHHHhhhhhcCCCC
Q 002937 429 WQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~~ll~~l~p~~ 485 (864)
.|+|.||=+-+---.. .....+..+ .....|.||+|--...+.+++..+..+....
T Consensus 282 ~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 4788898654421111 112222222 2345689999998888999988888776544
No 363
>smart00300 ChSh Chromo Shadow Domain.
Probab=81.49 E-value=0.97 Score=35.96 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.2
Q ss_pred chhhhHhhhhcCCccceeeeeecccccccccccc
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEY 225 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~ 225 (864)
+.+|+|++..+.+|...||+||++ ++..+-+
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~---~~~~lVp 37 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD---DAASLVP 37 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC---CcEEEEE
Confidence 578999999988999999999999 4444443
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=81.04 E-value=14 Score=40.40 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~-~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
++|+|...-..+.....+-.+ .++..+.|+|||..|..++..+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 478888877666555444334 5689999999999999999888643
No 365
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.68 E-value=10 Score=46.10 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHH----HHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld----~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.|||-....-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|.+.++...++... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 688877655444444457889999998866554 45555666689999999999999999999988765444 56
Q ss_pred eeccc-cccCcCCCCCCEEEEeCCC
Q 002937 682 LSTRA-GGLGINLATADTVIIYDSD 705 (864)
Q Consensus 682 lst~a-~~~GinL~~a~~VI~~d~~ 705 (864)
+.|.+ ....+.+.....||+=+.+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 66654 4556777788777765443
No 366
>PRK06835 DNA replication protein DnaC; Validated
Probab=80.68 E-value=4.3 Score=44.45 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHH----HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 284 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~----~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
+..+.++..++..+. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 456667666666432 2223457888999999999999999998887654
No 367
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=80.45 E-value=12 Score=47.23 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+... ..+++.++|..--
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHHH
Confidence 579999999998663 345557888899999998766655544333 3477888886544
No 368
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.31 E-value=8.2 Score=47.07 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=30.0
Q ss_pred CchHHHHHHHH-HHHhhcC-CC-ceE-EEcCCCCcHHHHHHHHHHHHh
Q 002937 286 LHPYQLEGLNF-LRFSWSK-QT-HVI-LADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 286 L~~yQ~~~v~~-l~~~~~~-~~-~~I-Lade~GlGKTi~ai~~i~~l~ 329 (864)
=|+-|.+.+.. |...... +. ++| |.-.+|+|||.++-.++..|.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777777743 3333332 22 343 899999999999988887764
No 369
>PRK07952 DNA replication protein DnaC; Validated
Probab=79.85 E-value=6.2 Score=41.18 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHh---hcC-CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHH
Q 002937 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 288 ~yQ~~~v~~l~~~---~~~-~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
+.|..++..+... +.. ..+.+|.-.+|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465566554322 222 24678999999999999999999887654 255555 34566666553
No 370
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=79.79 E-value=2.6 Score=46.74 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=23.2
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
..+|++++|..+.|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3578888888899999998776666555443
No 371
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.67 E-value=9.8 Score=42.78 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 002937 307 VILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l 328 (864)
.++.-..|+|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999998888755
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.34 E-value=4.7 Score=39.89 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
.+++-++|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 47888999999999999988776443 5889998887777777666654
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=79.18 E-value=12 Score=46.01 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
...+.||.-++|+|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888777553
No 374
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.72 E-value=6.3 Score=49.25 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 292 EGLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 292 ~~v~~l~~~~~--~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.-++.+...+. ...+.||.-++|.|||..+-+++..+..
T Consensus 180 ~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 180 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34666655433 3568899999999999999888777654
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=78.53 E-value=13 Score=40.43 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCc-eEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 303 ~~~~-~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
+... .++..+.|+|||..|.++...+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4455 78899999999999999999987543
No 376
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.38 E-value=5.5 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+.||.-+.|+|||..|-++...+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998887766543
No 377
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.29 E-value=7.8 Score=48.33 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 293 GLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 293 ~v~~l~~~~--~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
-++.+...+ ....+.||.-++|+|||..+-+++..+..
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 355555432 34568899999999999999888877654
No 378
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.17 E-value=8.3 Score=48.00 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...+.||.-++|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4558899999999999999888777654
No 379
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=1.4 Score=47.55 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=35.1
Q ss_pred ccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 52 DSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 52 ~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+.|.+|-+. |+.|.==-|.-.||..|.+|-|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 689999854 7766667789999999999988764 3379999974
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=78.11 E-value=5.8 Score=41.12 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 297 l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
+.-.+..|.-.+|+..+|+|||+.++-++...... ..+++++.-...-.+-.+.+..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHHc
Confidence 33345677778999999999999999988877554 34788887665555555554443
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=77.78 E-value=11 Score=36.81 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=24.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
.++....|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999988888776654323334444
No 382
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=77.56 E-value=6.5 Score=45.55 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...++.+|.-++|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 45678899999999999998888877643
No 383
>PRK10867 signal recognition particle protein; Provisional
Probab=77.51 E-value=11 Score=42.83 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
.+++-..|+|||.++.-++.++......++++|+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56788999999999999888887662234444443
No 384
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=77.41 E-value=0.58 Score=47.58 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=36.0
Q ss_pred ccccccccccC----------CceeecCCCCCcccccccCCCC---CCCCCCCcccCccCC
Q 002937 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~----------~~l~~C~~C~~~~H~~Cl~p~~---~~~p~~~W~C~~C~~ 97 (864)
...+|-.|-.+ .+|+.|..|+++=|++||.-.. ..+....|.|-+|+.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 34677777533 3499999999999999996432 234567899999985
No 385
>CHL00206 ycf2 Ycf2; Provisional
Probab=77.05 E-value=6.3 Score=51.79 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=31.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
...+|++|..++|+|||..|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 456788999999999999887666642 2377777766766655
No 386
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=76.64 E-value=30 Score=37.69 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
|-+++..|.....+++ .-++..+.|.||+..|.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5566666666665553 567899999999999999999987653
No 387
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=76.21 E-value=16 Score=42.45 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=28.0
Q ss_pred cccccCCcceeEEEecccccccCcccHHHHHHHhcc---cccEEEeecCC
Q 002937 420 DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 466 (864)
Q Consensus 420 ~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~---~~~rllLTgTP 466 (864)
+...+......++|+||+|..++. ..+.++..-. .+..++...|+
T Consensus 115 ~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 115 DADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred CCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 455566677899999999999863 3445544432 23344444444
No 388
>PRK14873 primosome assembly protein PriA; Provisional
Probab=76.21 E-value=13 Score=44.81 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=71.9
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-C-CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEee
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-g-~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls 683 (864)
.|||-+...+++......|+.+||...-......+...|... | ..+..+++..+..+|.+...+...+... +++.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 689999999999999999999999999988888888877654 3 6799999999999999988777654433 6888
Q ss_pred ccccccCcCCCCCCEEEEe
Q 002937 684 TRAGGLGINLATADTVIIY 702 (864)
Q Consensus 684 t~a~~~GinL~~a~~VI~~ 702 (864)
|+++- =.-+..-..||+-
T Consensus 247 tRSAv-FaP~~~LgLIIvd 264 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIW 264 (665)
T ss_pred cceeE-EeccCCCCEEEEE
Confidence 88742 2223344455554
No 389
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=76.17 E-value=4.6 Score=47.14 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~ 327 (864)
..++++-|.+-.+-++..+..|+=||+-.+||+|||+.-|.....
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHH
Confidence 367899999999889899999999999999999999986554433
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.07 E-value=19 Score=41.33 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+.+|......++ ..|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4556666665555543 35789999999999999999988654
No 391
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=75.99 E-value=10 Score=43.68 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCc------eEEEcCCCCcHHHHHHHHHHHH--hcCC-CCceEEEecc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGER-ISPHLVVAPL 342 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~------~ILade~GlGKTi~ai~~i~~l--~~~~-~~~~LIV~P~ 342 (864)
..|.|||...+.-|.-.+.++.+ +++...=|-|||..+.+++.+. .... ...++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766423333333 4788889999997766555443 3332 3378888885
No 392
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=75.79 E-value=12 Score=35.17 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh----hCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 610 LQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 610 l~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
..++.+|+.+....|+|++|+|+....++.|.+.|= ..-++..+ .|.-.. .... ++|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~~------------~~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPPA------------ARQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SST------------T--S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCCC------------CCCe---EEEecC
Confidence 588999999999999999999999999999999992 22334444 222111 0112 455544
Q ss_pred ccccCcCCCCCCEEEEeCCCC
Q 002937 686 AGGLGINLATADTVIIYDSDW 706 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~w 706 (864)
... -....++.+|++++.+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 322 2344589999999876
No 393
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=75.73 E-value=2 Score=43.39 Aligned_cols=38 Identities=24% Similarity=0.838 Sum_probs=29.5
Q ss_pred cccccccccCC--------ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 51 DDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 51 ~~~C~~C~~~~--------~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
.-+|.+|+.++ ....|..|...||..|... . .||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---~------~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---K------SCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---C------CCCCcHh
Confidence 45788888653 3789999999999999952 1 2999974
No 394
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.65 E-value=7 Score=41.35 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 288 ~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
|+....+..+......+...+|..++|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44555555555566788899999999999999988776643 23666664
No 395
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=75.54 E-value=0.32 Score=39.92 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=19.0
Q ss_pred ccccccccC----Cc--eeecC--CCCCcccccccCCCCCCCCC-------CCcccCccCC
Q 002937 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPS-------GSWRCPECVS 97 (864)
Q Consensus 52 ~~C~~C~~~----~~--l~~C~--~C~~~~H~~Cl~p~~~~~p~-------~~W~C~~C~~ 97 (864)
..|.+|... +. .+.|+ .|...||..||---+...+. -.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 358888742 22 68897 89999999999654432221 2357999975
No 396
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.38 E-value=22 Score=39.35 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...++-|......++ ..||.-+.|+|||..+-.++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3334444444334433 35789999999999998888887643
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=75.23 E-value=5.9 Score=48.41 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999987777655443
No 398
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.83 E-value=4.4 Score=45.38 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
.++.+|+-+.|.|||..+.+++... ...+-=|.|.++...|.-|-++.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHHH
Confidence 4567899999999999887777653 34677788999999998776554
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.73 E-value=12 Score=42.60 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=25.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
-.+++-..|.|||.++.-++.++......++++|.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35789999999999999988887632223444443
No 400
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=74.69 E-value=5 Score=48.65 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEeccccH-HHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLSTL-RNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~--~~~LIV~P~sll-~qW~~E~~~~ 355 (864)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+.-- ..-..-+...
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478899999863 34566677789999999999999998864 32 368888874332 3333334443
No 401
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=74.68 E-value=0.97 Score=34.96 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.3
Q ss_pred hhhHhhhhcCC-ccceeeeeecccccccccccc
Q 002937 194 VDRILACRGED-DEKEYLVKYKELSYDECYWEY 225 (864)
Q Consensus 194 verIi~~~~~~-~~~~ylVKW~~l~y~~~tWe~ 225 (864)
+++|++....+ |...||+||++ ++..+-+
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~---~~~~lVp 31 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD---GQASLVP 31 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC---CeEEEEE
Confidence 56777777655 89999999999 4444543
No 402
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.52 E-value=2.1 Score=48.14 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=41.0
Q ss_pred ccccccccccccCCceeecCCCCCcccccccCCCCCCCC-CCCcccCccCC
Q 002937 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~ 97 (864)
...+.+|+.|.-+|..+.|+.|-++||..|..|--.... ...|.||.|..
T Consensus 57 ~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 57 SNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cCCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 445789999999999999999999999999987543322 45699999875
No 403
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=74.39 E-value=11 Score=45.94 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEec-cccHHHHHHHHHHHc
Q 002937 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAP-LSTLRNWEREFATWA 356 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~--~~~LIV~P-~sll~qW~~E~~~~~ 356 (864)
|.|-|..+|. ...+.+++....|+|||.+.+.-+.++... +. ..+|+|+. .....+-.+.+.+..
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 7789999886 335667777799999999999999988854 33 35777765 444455566665544
No 404
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.57 E-value=42 Score=40.22 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|...+..|.....+++ + .|+..+.|.|||..|..++..+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444444442 3 579999999999988888887753
No 405
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=73.46 E-value=20 Score=39.83 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHH-hhc--CCCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 285 SLHPYQLEGLNFLRF-SWS--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~-~~~--~~~~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
.-|+-|++.+..... ... ...+.++.-.+|+|||.++--++..+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 457788887744322 222 234689999999999999988888776653
No 406
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.25 E-value=1.8e+02 Score=36.36 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhc--------CC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWS--------KQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~--------~~---~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
-|-+++.-+..... .+ ...++.-++|+|||..|-++...++..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 57777766543332 11 125789999999999999888887643
No 407
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=73.02 E-value=8.1 Score=44.39 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=39.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......++
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHHc
Confidence 4555678999999999999998888776543 4788988877777665544443
No 408
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=72.99 E-value=1.4 Score=34.22 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.2
Q ss_pred eeeeeeecCCccccccccChHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEF 153 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l 153 (864)
.+|+|-|.|++-..+.|+|++.|
T Consensus 31 ~~YyVHY~g~nkR~DeWV~~~~i 53 (55)
T PF11717_consen 31 PEYYVHYQGWNKRLDEWVPESRI 53 (55)
T ss_dssp EEEEEEETTSTGCC-EEEETTTE
T ss_pred EEEEEEcCCCCCCceeeecHHHc
Confidence 79999999999999999998754
No 409
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=72.65 E-value=8.9 Score=45.35 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEec-cccHHHHHHHHHHHcCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-----~~~~LIV~P-~sll~qW~~E~~~~~p~ 358 (864)
.|..-|+.|...+ ....-.|+.-.+|+|||.+++-++..++... .-|+||||= ++.+.|...-+-.. +
T Consensus 378 ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 5677899987665 3445678999999999999999998887654 239999998 57777765555432 3
Q ss_pred CeEEEEecChHHHHHHHHhhhc
Q 002937 359 MNVVMYVGTSQARNIIREYEFY 380 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~ 380 (864)
-..++..|+......++.+.++
T Consensus 452 rpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CceEEEeccccCCHHHHHHHHH
Confidence 4456677766665555555444
No 410
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=72.57 E-value=95 Score=34.34 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCCchHHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH---HHHHHHHHHHcCC
Q 002937 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL---RNWEREFATWAPQ 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~--~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll---~qW~~E~~~~~p~ 358 (864)
...|.+|...+.-|...-.. ....+|....|+|||..+-.++..+ .-+...+.+.... .-|+.-+.+..
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~-- 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ-- 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc--
Confidence 34688999988666433222 1123788999999999887777665 2366777775432 23444443321
Q ss_pred CeEEEEecChHHH--HHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQAR--NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r--~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDE 436 (864)
..-+.|....- ..+ ..+.-.+..++...+. -.--++|+|-
T Consensus 82 --~~d~dg~~~~~~~en~------------------------------~d~i~~l~q~~~~t~~------d~~~~liLDn 123 (438)
T KOG2543|consen 82 --LADKDGDKVEGDAENF------------------------------SDFIYLLVQWPAATNR------DQKVFLILDN 123 (438)
T ss_pred --cCCCchhhhhhHHHHH------------------------------HHHHHHHHhhHHhhcc------CceEEEEEcC
Confidence 01111111000 000 0010111111111111 1123689999
Q ss_pred cccccCcccHHHHHHHhcc-----cccEEEeecCCCCC
Q 002937 437 GHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQN 469 (864)
Q Consensus 437 aH~lkn~~s~~~~~l~~l~-----~~~rllLTgTP~~n 469 (864)
|..++...+...+.+..+. ..-++.+++++..+
T Consensus 124 ad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 124 ADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 9999988888888777763 34568888887543
No 411
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.27 E-value=6.8 Score=43.66 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=37.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEEEEe
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~~ 365 (864)
.+++-=-|+|||.++.-++.++...+. ++|+|+--.--+--.++++..+-...+-+|.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCC-ceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 456777899999999998888888443 5555554333344455565555444554443
No 412
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=72.15 E-value=30 Score=35.51 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=24.1
Q ss_pred ceeEEEecccccccCccc---HHHHHHHhc-ccccEEEeec
Q 002937 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQY-STRHRVLLTG 464 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s---~~~~~l~~l-~~~~rllLTg 464 (864)
..++++||..|.+.+... .++..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467999999999987542 333334443 2445677776
No 413
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=72.10 E-value=17 Score=40.70 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
...|+.+.|..+.|.|||..+-.+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 4678888899999999998766655554433
No 414
>PRK08939 primosomal protein DnaI; Reviewed
Probab=72.05 E-value=7.2 Score=42.25 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 293 ~v~~l~~~~~--~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
+..|+..... .+.|.+|.-.+|+|||..+.|++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4555532221 3567889999999999999999998876543 44444
No 415
>PRK06921 hypothetical protein; Provisional
Probab=71.96 E-value=14 Score=39.29 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
.+.+.+|.-++|+|||..+.+++..+.......++.+....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 46678999999999999999998888765223455554333
No 416
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=71.88 E-value=7.5 Score=47.68 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C--CCceEEEeccc-cHHHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPLS-TLRNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~--~~~~LIV~P~s-ll~qW~~E~~~~~ 356 (864)
.|.|-|.++|. ...+.+++....|+|||.+.+.-+.+|... + +..+|+|+.+. ....-..-+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 58899999986 345667777799999999999999998864 3 33678888743 3333444444443
No 417
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.74 E-value=25 Score=39.79 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
..++-..|+|||.++..++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457889999999999888887765543 4555543
No 418
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=71.60 E-value=1.5 Score=32.43 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.6
Q ss_pred hHhhhh-cCCccceeeeeecccc
Q 002937 196 RILACR-GEDDEKEYLVKYKELS 217 (864)
Q Consensus 196 rIi~~~-~~~~~~~ylVKW~~l~ 217 (864)
+|++.| ..+|..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 567776 5678999999999864
No 419
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=15 Score=40.72 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
.-.+++-++|.||+..-+-++..+.... ++|.|+-..-..||+--..+..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 3357899999999987777777776554 9999999999999988887764
No 420
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=71.36 E-value=23 Score=38.56 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 292 EGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 292 ~~v~~l~~~~~~~~--~~-ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
..+.-+...+..++ ++ ++..+-|.|||..|..++..+...
T Consensus 11 ~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 11 NIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred HHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 33333444434332 34 789999999999999999887643
No 421
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.15 E-value=27 Score=38.91 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|..++..+.....++ ...++.-+.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444444443 35778999999999998888776654
No 422
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=70.90 E-value=6.2 Score=40.60 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
-.|.-.+++-++|+|||+.++.++..-......++++|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 4556678899999999999999887665541238888888777788888877654
No 423
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=70.85 E-value=18 Score=38.67 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P 341 (864)
++..++.-.+|+|||.++..++.++... +..++.+|.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456678899999999998888877654 3335555543
No 424
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=70.76 E-value=20 Score=37.59 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=19.6
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~ 327 (864)
..+|+++++.-+.|.|||..+-.++..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367888888889999999655443333
No 425
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=70.73 E-value=6.3 Score=43.18 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
.|++.+|+.++|+|||..|+++...|-.. -||..++-..+.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEiy 89 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEIY 89 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG-
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEcccceee
Confidence 46678899999999999999999887322 388777765443
No 426
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=70.52 E-value=16 Score=40.12 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=33.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
+++++.-++|+|||+.|=|+.... ...|.=|.-..+...|.-|=++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 678899999999999887766543 12444445556668898886654
No 427
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=70.12 E-value=13 Score=42.99 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
|...+..|......++ .-++.-.=|+|||.+|=.++..+...
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 4444555555554443 45788899999999988888777544
No 428
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=69.56 E-value=45 Score=36.36 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=24.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
-..|.-..|.|||.++..++..+...+ +.++++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 344667999999999888887776543 3555554
No 429
>CHL00176 ftsH cell division protein; Validated
Probab=69.42 E-value=17 Score=43.58 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+.+|.-++|+|||..|=+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776543
No 430
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=69.22 E-value=7.9 Score=47.50 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL 342 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~--~~~LIV~P~ 342 (864)
.|.|-|+++|. ...+..++....|+|||.+.+.-+++|... +. ..+|+|+-+
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 58899999986 334566777789999999999999998863 33 368888774
No 431
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=69.11 E-value=20 Score=39.01 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCC
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 470 (864)
.++++||.||+-. ++.-..|-.+...-.+++-||--+-+
T Consensus 224 TilFiDEiHRFNk--sQQD~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 224 TILFIDEIHRFNK--SQQDTFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred eEEEeHHhhhhhh--hhhhcccceeccCceEEEecccCCCc
Confidence 3688999999842 33333344445566677888864333
No 432
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.90 E-value=12 Score=41.08 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCch
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~ 386 (864)
.+++-=-|.|||.+..-++.++.+.+. ++.+||--.--.---++++.++....+-+|.......
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~-K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d--------------- 167 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY-KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD--------------- 167 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC-ceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---------------
Q ss_pred hhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCC
Q 002937 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 466 (864)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP 466 (864)
.-.....-...+++-+|++||+|=+-|.+-..+.
T Consensus 168 --------------------------pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL-------------------- 201 (483)
T KOG0780|consen 168 --------------------------PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASL-------------------- 201 (483)
T ss_pred --------------------------hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH--------------------
Q ss_pred CCCCHhHHHhhhhhcCCC
Q 002937 467 LQNNLDELFMLMHFLDAG 484 (864)
Q Consensus 467 ~~n~~~el~~ll~~l~p~ 484 (864)
.+|+...-+++.|+
T Consensus 202 ----feEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 202 ----FEEMKQVSKAIKPD 215 (483)
T ss_pred ----HHHHHHHHhhcCCC
No 433
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=68.90 E-value=2.7 Score=31.85 Aligned_cols=34 Identities=29% Similarity=0.752 Sum_probs=20.7
Q ss_pred ecCCCCCcccccccCCC--------CCCCCCCCcccCccCCCC
Q 002937 65 SCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 65 ~C~~C~~~~H~~Cl~p~--------~~~~p~~~W~C~~C~~~~ 99 (864)
.|..|+-.|+..==+|. ..+.| .+|.||.|....
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp-~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLP-DDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCC-CCCCCCCCCCcH
Confidence 57888888875422221 11233 389999998643
No 434
>PRK12377 putative replication protein; Provisional
Probab=68.30 E-value=15 Score=38.48 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
..+.+|.-++|+|||..+.+++..+...+. +++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHHH
Confidence 356789999999999999999998876542 44444334444443
No 435
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=67.91 E-value=8.5 Score=40.85 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
.+|......+++.+++-++|+|||.+.-+++..+... ...+++|-
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iE 162 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIE 162 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEec
Confidence 4555555678899999999999999988887766444 23444443
No 436
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=67.87 E-value=0.62 Score=34.22 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=26.8
Q ss_pred cccccccC---C-ceeecCCCCCcccccccCCCCCCCCCCCcccCccC
Q 002937 53 SCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (864)
Q Consensus 53 ~C~~C~~~---~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 96 (864)
.|.+|... + .++... |+-.||..|+..-+... -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 58888753 3 355555 99999999998766442 2799884
No 437
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=67.81 E-value=16 Score=37.96 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=39.2
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
+..+...+++-++|+|||..++-++...... ..++++|.-.....+-.+.+..+
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHHh
Confidence 3456677889999999999999888775533 34888888766666655555543
No 438
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=67.62 E-value=13 Score=40.58 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=33.5
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 282 ~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..+.+.+.|.+.+ ......+.+.|++-.||+|||...-+++..+..
T Consensus 125 ~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 125 TSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456777776554 344466788999999999999988777776643
No 439
>PRK10865 protein disaggregation chaperone; Provisional
Probab=67.36 E-value=3.3e+02 Score=34.29 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..++.-++|+|||..|-++...+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3678999999999999888877754
No 440
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.23 E-value=13 Score=40.22 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.+.+-|.+ +|......+.+.+++-.||+|||..+-+++..+..
T Consensus 116 ~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 116 IMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444443 44444567789999999999999988777776644
No 441
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.76 E-value=30 Score=38.51 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-c---ccHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWEREF 352 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~---sll~qW~~E~ 352 (864)
+.-..++-..|.|||.++..++..+...+. ++.+|+- . ..+.||..-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHHHh
Confidence 444567889999999998888777655543 4444443 2 2356775543
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.53 E-value=12 Score=46.12 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
...+.+|.-++|+|||..|-++...+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 45678899999999999887776653 2367777766655554
No 443
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=66.45 E-value=2.9 Score=36.07 Aligned_cols=32 Identities=19% Similarity=0.658 Sum_probs=27.1
Q ss_pred cccccccccccC-CceeecC--CCCCcccccccCC
Q 002937 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLVP 80 (864)
Q Consensus 49 ~~~~~C~~C~~~-~~l~~C~--~C~~~~H~~Cl~p 80 (864)
.....|..|+.. |-.+.|. .|.+.||+.|..-
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 345689999999 9999996 4999999999854
No 444
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=66.39 E-value=17 Score=37.36 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=40.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
.+.-.+++.++|+|||..++.++...... ..+++++.......+-.+.+..+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHcC
Confidence 45556889999999999999888776554 358899988777777666665543
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=65.52 E-value=19 Score=37.29 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=37.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
..+.-.+|.-+.|+|||..++.++..+...+ .+++.++......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566778999999999999988888776543 467777765555444444443
No 446
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.44 E-value=9.9 Score=39.49 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=24.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEE--eccccH
Q 002937 309 LADEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~~~~~~LIV--~P~sll 345 (864)
..--=|.|||..+.++...|...+. ++|+| .|.+.+
T Consensus 7 ~s~kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 7 VSPKGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 3344589999999888888876553 56665 454444
No 447
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=65.34 E-value=8.7 Score=39.93 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=34.5
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 300 ~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
.+..|.-.+|+..+|+|||..++.++.........+++++.....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 455666789999999999999998888776654458888876443
No 448
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=65.15 E-value=17 Score=38.36 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=40.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
-.+...++.-++|+|||+-++-|+...... ..|++.|+-...-..-.+.+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHc
Confidence 567778899999999999999999988777 34899998766555555555443
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.14 E-value=44 Score=35.55 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
-.++.-..|.|||.++..++..+...+ .++++|.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 345668999999999988887776554 3555554
No 450
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=64.48 E-value=6.1 Score=38.93 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=19.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 309 LADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
|..+-|-|||...-.+++.+...+..+++|.+|.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 4556899999765555555555555689999995
No 451
>PHA00012 I assembly protein
Probab=64.46 E-value=18 Score=39.09 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
++.-.+|.|||+.|++-+...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4566799999999998776666655
No 452
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=64.35 E-value=41 Score=44.46 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh---cCCCCceEEEeccccH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~---~~~~~~~LIV~P~sll 345 (864)
.|.+-|.+++..+.. ..++-.+|.-..|+|||.+.-+++..+. ......++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999976532 2445678889999999988655544332 2222357778886544
No 453
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=64.33 E-value=3.3 Score=37.29 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=26.2
Q ss_pred ccccccccccC-CceeecCC--CCCcccccccCC
Q 002937 50 KDDSCQACGES-ENLMSCDT--CTYAYHAKCLVP 80 (864)
Q Consensus 50 ~~~~C~~C~~~-~~l~~C~~--C~~~~H~~Cl~p 80 (864)
....|.+|+.. |-.+.|.. |...||..|..-
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 35689999985 77999988 999999999844
No 454
>PF12846 AAA_10: AAA-like domain
Probab=64.26 E-value=13 Score=39.84 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
+.++++.-.+|+|||..+..++..+...+ .+++|+=|..-...|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~~ 45 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPLA 45 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHHH
Confidence 45788888999999998887777776655 3666665554444433
No 455
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=64.18 E-value=12 Score=39.41 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+...-..|+..+||..+|+|||..|+++...|
T Consensus 55 dlik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 55 DLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 3344444568888999999999999999998887
No 456
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=64.14 E-value=27 Score=34.84 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=24.3
Q ss_pred eeEEEecccccccCcccHHHHHHHhccc--ccEEEeecC
Q 002937 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~s~~~~~l~~l~~--~~rllLTgT 465 (864)
.++|+|||||-+.. .+...+..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998864 55566666654 466777764
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.88 E-value=46 Score=38.39 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEE
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVV 339 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~-~~~~~~LIV 339 (864)
..|.-.+|.|||.++.-+...+.. .+..++.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457789999999998777766643 333344433
No 458
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=63.82 E-value=4.5 Score=46.34 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=38.7
Q ss_pred ccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+.+.|.+|.++|.++.|+.|...+|-.|. ....|.+.|.|..|..-
T Consensus 88 ~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 88 EPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 46889999999999999999999999996 34567888888888753
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.77 E-value=38 Score=41.22 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEec
Q 002937 306 HVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAP 341 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~-~~~~~~~LIV~P 341 (864)
-..|...+|.|||.++.-++..+. ..+...+.+|.-
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 346888999999988776666553 333334544443
No 460
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=63.77 E-value=3.6e+02 Score=33.92 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.++..++|+|||..|-++...++.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC
Confidence 578999999999999888877754
No 461
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=63.70 E-value=14 Score=35.50 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.7
Q ss_pred hcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHH
Q 002937 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (864)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L 644 (864)
..++++.++.+|+.+....|.||+|.+.....++.|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 462
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=63.67 E-value=9.1 Score=41.45 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
..|++.+++-++|+|||..|+++...|=.. -||.-+.-.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~d--vPF~~isgs 101 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGED--VPFVAISGS 101 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCC--CCceeeccc
Confidence 456778899999999999999999987332 266544433
No 463
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.67 E-value=16 Score=38.78 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.+.+.|.+.+.++.. ..++..+++-++|+|||.+.-+++..+..
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 367788887765532 23445789999999999998888877643
No 464
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=63.59 E-value=46 Score=35.70 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
+|...|-.++..|...+.+++ +++|... |.||+..|..|+..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 456678888888877766664 4555544 6899999999998887543
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.53 E-value=58 Score=36.92 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=31.2
Q ss_pred ceeEEEecccccccCcccHHHHHHHhcc-----cccEEEeecCCCCCCHhHHHhhhhhcCC
Q 002937 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s~~~~~l~~l~-----~~~rllLTgTP~~n~~~el~~ll~~l~p 483 (864)
.++.++||.+=+..+. ......+..+. .+..|.|+||--.+.+.++...+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 3567889986443322 22334444442 2345789999766667666655554433
No 466
>COG1773 Rubredoxin [Energy production and conversion]
Probab=63.15 E-value=6.4 Score=30.33 Aligned_cols=12 Identities=42% Similarity=1.082 Sum_probs=9.5
Q ss_pred CCcccCccCCCC
Q 002937 88 GSWRCPECVSPL 99 (864)
Q Consensus 88 ~~W~C~~C~~~~ 99 (864)
.+|.||.|-..+
T Consensus 35 d~w~CP~Cg~~K 46 (55)
T COG1773 35 DDWVCPECGVGK 46 (55)
T ss_pred CccCCCCCCCCH
Confidence 479999998643
No 467
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=63.01 E-value=12 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 294 v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
+.|+...-..+.-+++....|+|||-++..++.. .|.-++.+.+....-..++.
T Consensus 84 ~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~ 137 (297)
T COG2842 84 FFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLIL 137 (297)
T ss_pred hhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHH
Confidence 3445444456677888899999999776444332 25555555555554444443
No 468
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=62.41 E-value=5.5 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=20.0
Q ss_pred eecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
..|..|++.||..-. .|.....|..|-.
T Consensus 2 r~C~~Cg~~Yh~~~~------pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFN------PPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB--------SSTTBCTTTTE
T ss_pred cCcCCCCCccccccC------CCCCCCccCCCCC
Confidence 369999999996644 3555667999964
No 469
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=62.26 E-value=11 Score=43.89 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=48.7
Q ss_pred CCchHHHHHHHHHHHh--------hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFS--------WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~--------~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
..++...+++.|.... .....+.+|+...|+|||+.|-++...+ ..+++-|-...++..|.-|.++-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----CCeEEEeeCHHHhccccchHHHH
Confidence 4566777788776432 2345578999999999999987777632 33677666669999999888763
No 470
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.13 E-value=22 Score=38.73 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
+.+.+.|.+.+ ......+.+.+++-.+|+|||..+-+++..+.
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 44556666544 44446788999999999999977766666553
No 471
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=62.10 E-value=43 Score=44.85 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=41.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc---CCCCceEEEeccccH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG---ERISPHLVVAPLSTL 345 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~---~~~~~~LIV~P~sll 345 (864)
..|.+-|++++..+.. ...+-.+|.--.|+|||.+.-+++..+.. .....++.++|..--
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 4689999999977642 23456788889999999886555554432 222367778996544
No 472
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.78 E-value=30 Score=37.48 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=31.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeE
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~ 361 (864)
++.---|+|||.+..-++.++...+ .++|+.+--.--.--..+++.|.-.+.+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv 195 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGV 195 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 4566789999987666666665554 3555554433223345556667643333
No 473
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=61.77 E-value=11 Score=38.90 Aligned_cols=41 Identities=32% Similarity=0.418 Sum_probs=26.1
Q ss_pred ceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCH
Q 002937 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 471 (864)
..+.+||||++.+-.. .+ ..+........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g--~l-~~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YL-LLLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChH--HH-HHHHhhccCcceEEEECchhccC
Confidence 4788999999976431 11 22334444456778899987653
No 474
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=61.72 E-value=4 Score=43.09 Aligned_cols=65 Identities=20% Similarity=0.480 Sum_probs=39.7
Q ss_pred cccccccccccccC--C---ceeecCCCCCcc--------cccccCCCCCCCCC-CCcccCccCCCC-----cccccccc
Q 002937 47 IDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECVSPL-----NDIDKILD 107 (864)
Q Consensus 47 ~~~~~~~C~~C~~~--~---~l~~C~~C~~~~--------H~~Cl~p~~~~~p~-~~W~C~~C~~~~-----~~~~kil~ 107 (864)
+++.+..|.+||+. | -|+-|+.|...| |..|....--.+.. ..=.||.|+=.+ ...|.+-+
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCLtvGMklEAVRA 90 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCLTVGMKLEAVRA 90 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHHhhhhhhHHHHHH
Confidence 45556789999964 2 199999998765 56676444333332 335788887422 23455555
Q ss_pred cccc
Q 002937 108 CEMR 111 (864)
Q Consensus 108 ~r~~ 111 (864)
-|+|
T Consensus 91 DRMR 94 (475)
T KOG4218|consen 91 DRMR 94 (475)
T ss_pred hhhc
Confidence 5543
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=61.58 E-value=23 Score=41.02 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHH
Q 002937 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (864)
Q Consensus 294 v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~ 355 (864)
++-+...+..+.=.||+..+|.|||..++.++.........+++++...-...++..-+...
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 33344456677778999999999999999988776543334889998877777877766443
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=60.99 E-value=28 Score=35.81 Aligned_cols=53 Identities=23% Similarity=0.227 Sum_probs=36.7
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
+..+...+++-++|+|||..+..++...... ..+++++.......+..+....
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHH
Confidence 4556677899999999999998887665543 3477777765555554444433
No 477
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=60.62 E-value=48 Score=41.67 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=67.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHH----hhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.+||-......+-.....|.+++|.+..+..+....+.+ ...++++..++|.++..++.+.++.+..+... ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 578877655444344456889999999987766655544 34477888999999999999999888764333 45
Q ss_pred eeccc-cccCcCCCCCCEEEEeCC
Q 002937 682 LSTRA-GGLGINLATADTVIIYDS 704 (864)
Q Consensus 682 lst~a-~~~GinL~~a~~VI~~d~ 704 (864)
++|.. ....+.+.....+|+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 55553 455677778888777544
No 478
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=60.52 E-value=18 Score=34.38 Aligned_cols=82 Identities=21% Similarity=0.082 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh----hCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.+.+..++.+|+.+....|+||+|++.....++.|.+.|= ..-++.....+.. ..... ++
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~-------------~~~~P---V~ 74 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP-------------AAGQP---VL 74 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC-------------CCCCC---EE
Confidence 5668999999999999999999999999999999999992 1233443322221 01122 34
Q ss_pred eeccccccCcCCCCCCEEEEeCCCC
Q 002937 682 LSTRAGGLGINLATADTVIIYDSDW 706 (864)
Q Consensus 682 lst~a~~~GinL~~a~~VI~~d~~w 706 (864)
|+. +..-+...++.+|+++..+
T Consensus 75 l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 75 LTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEc---CCCCCCCCCcEEEECCCCC
Confidence 441 2234666788899888753
No 479
>PRK09183 transposase/IS protein; Provisional
Probab=60.34 E-value=9 Score=40.46 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
..+.+.+|.-++|+|||..+.++...+...+ ..++++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 6788899999999999999888766554433 2555543
No 480
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.19 E-value=19 Score=40.08 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH
Q 002937 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~--~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~ 346 (864)
+|-+-|..+++.+.... ..+....|.-.-|+|||...=++...+.. ...++++++|..+-.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHH
Confidence 36678999988875554 45667789999999999887666666544 335889999976553
No 481
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.64 E-value=37 Score=36.01 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.5
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
++.+|..++|+||+.-|-+++-.. ...|.-|....++..|.-|-++..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA----nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc----CCceEEeehHHHHHHHhccHHHHH
Confidence 466789999999999876665432 246777777889999999877654
No 482
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=59.58 E-value=91 Score=37.86 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=37.5
Q ss_pred CCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS 343 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~s 343 (864)
.+..-|.+++.-+......+. -.+|..+=|=|||..+-..+..+.+.. ...++|.+|..
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~ 271 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTP 271 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCH
Confidence 456678887766655556555 466888999999976532222222222 34888888853
No 483
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=59.49 E-value=12 Score=45.92 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL 342 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~--~~~LIV~P~ 342 (864)
.|.|-|+++|. ...+..++....|+|||.+.+.-+.++... +. ..+|+++-+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVK------TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHh------CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 58899999986 234567777789999999999999998864 32 357887774
No 484
>PRK05748 replicative DNA helicase; Provisional
Probab=59.11 E-value=21 Score=41.02 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 292 ~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
.+++-+...+..|.-.+|+..+|.|||.-++.++.........+++++...-.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3444444456677778999999999999999998876543344888887766655554444
No 485
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=58.37 E-value=21 Score=43.97 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=25.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
..+.+.+|.-+.|+|||..+-+++..+ ..+++.|-..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~~~ 246 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISINGP 246 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEecH
Confidence 345788999999999998876665543 2355555443
No 486
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=58.02 E-value=21 Score=41.58 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFP 382 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~ 382 (864)
.+.-.++.-++|+|||..++-|+......+. ++|+|.-.....|-.+..+.+.-++.-..-.|.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~--------------- 325 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKE-RAILFAYEESRAQLLRNAYSWGIDFEEMEQQGL--------------- 325 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCc---------------
Q ss_pred CCchhhhcccCCccccccccccCCCcEEEcc--------HHHHHhcccccCCcceeEEEec
Q 002937 383 KNPKKVKKKKSGQVVSESKQDRIKFDVLLTS--------YEMINLDSASLKPIKWQCMIVD 435 (864)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt--------y~~~~~~~~~l~~~~w~~vIvD 435 (864)
+.+.. -+.+..-...+...+.++||||
T Consensus 326 --------------------------l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 326 --------------------------LKIICAYPESAGLEDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred --------------------------EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEc
No 487
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=56.95 E-value=28 Score=34.55 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEeccccHHHHHHHHHHHc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~---------~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
.+.-++++.+.|.|||..++.++..+... ..+++|++.......+..+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 56668899999999999999988887652 2358899988777777777776655
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=56.71 E-value=21 Score=39.25 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.||......+.+.+++-++|+|||...-+++..+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5566666788999999999999998876766655
No 489
>PRK09087 hypothetical protein; Validated
Probab=56.37 E-value=58 Score=33.57 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=24.9
Q ss_pred eEEEecccccccCcccHHHHHHHhcc-cccEEEeecC
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYS-TRHRVLLTGT 465 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~-~~~rllLTgT 465 (864)
+++++|+.|.+......++..+..+. ....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 37899999988544455666665554 3567888887
No 490
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.36 E-value=12 Score=40.86 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=35.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
....|.+|..++|+|||..|-+..... ..+++=|-=..+...|..|-++..
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHHH
Confidence 467889999999999999887766542 234444444556667877665543
No 491
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=56.26 E-value=18 Score=37.28 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=29.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
+++.+..-||+|||.++-.++..+......+++|+=|..
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 445555589999999999999999854344788887755
No 492
>PHA00350 putative assembly protein
Probab=56.15 E-value=23 Score=39.68 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=13.6
Q ss_pred EEEcCCCCcHHHHHHHH
Q 002937 308 ILADEMGLGKTIQSIAF 324 (864)
Q Consensus 308 ILade~GlGKTi~ai~~ 324 (864)
++.--+|+|||.-|+..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 45567899999999873
No 493
>PRK06904 replicative DNA helicase; Validated
Probab=56.14 E-value=30 Score=39.95 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
.++.+...+..+.=.|||.-+|.|||.-++.++.........|++++...-...++..-+
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl 269 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM 269 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 444444566777788999999999999998887765433345889988876666665544
No 494
>PRK13531 regulatory ATPase RavA; Provisional
Probab=55.92 E-value=16 Score=41.83 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 291 ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
.+.|.-+......+.+++|..++|+|||..|-++.....
T Consensus 26 e~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 26 SHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 345555555667899999999999999999887777653
No 495
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=55.88 E-value=48 Score=32.37 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 294 v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
++.+.........++|.-|+|+||+..|=++-. .-....+|++.|--..+-..+
T Consensus 12 ~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~-~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 12 REQAKRAASSDLPVLITGETGTGKELLARAIHN-NSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH-CSTTTTS-EEEEETTTS-HHH
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH-hhhcccCCeEEEehhhhhcch
Confidence 344444456678899999999999987644332 111234588888777665443
No 496
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=55.86 E-value=89 Score=30.81 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=36.0
Q ss_pred ccccCCcceeEEEecccccccCcc----cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhh
Q 002937 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (864)
Q Consensus 421 ~~~l~~~~w~~vIvDEaH~lkn~~----s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~ 479 (864)
...+..-.|++||+||.-..-+.+ ......+..-+..--+.|||--.+..+.|+..++.
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VT 170 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQIT 170 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeee
Confidence 344556689999999986654432 34444454444556799999855444444444433
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=55.82 E-value=22 Score=42.54 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 289 YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 289 yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
-|.+++..+......+.+++|.-++|+|||..+-+++..+...
T Consensus 22 G~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 22 GQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3556777777767778899999999999999988888766443
No 498
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.75 E-value=4.7 Score=26.85 Aligned_cols=25 Identities=32% Similarity=1.019 Sum_probs=11.6
Q ss_pred cccccccCC---ceeecCCCCCcccccc
Q 002937 53 SCQACGESE---NLMSCDTCTYAYHAKC 77 (864)
Q Consensus 53 ~C~~C~~~~---~l~~C~~C~~~~H~~C 77 (864)
.|.+|+..+ ..-.|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 488898664 4788999999999988
No 499
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=55.42 E-value=78 Score=43.43 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH---HHhcCCCCceEEEeccccH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA---SLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~---~l~~~~~~~~LIV~P~sll 345 (864)
..|.+-|.+++..+.. ..++-++|.-..|+|||.+..+++. .+.......++.++|.+-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4789999999876522 3345567788999999988744333 3333333467778886543
No 500
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=55.21 E-value=31 Score=39.33 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
.++.+...+..|.=.+|+..+|.|||..++.++..+......|++++...-...+..
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 444444456677778999999999999999988776533345888887654444443
Done!