Query 002937
Match_columns 864
No_of_seqs 591 out of 4060
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3E-109 9E-114 1011.5 40.2 704 100-837 38-789 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1E-74 3.5E-79 689.7 33.5 476 284-779 54-573 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 4.3E-69 1.5E-73 627.1 36.3 456 278-778 31-497 (500)
4 3dmq_A RNA polymerase-associat 100.0 4.2E-49 1.4E-53 487.5 22.4 420 284-754 152-633 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 3.2E-44 1.1E-48 415.1 27.7 421 284-753 8-492 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 5.2E-43 1.8E-47 370.7 21.4 252 516-779 13-269 (271)
7 2fwr_A DNA repair protein RAD2 100.0 5.2E-41 1.8E-45 387.6 15.7 371 283-752 91-470 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 2.9E-36 9.9E-41 355.2 30.7 439 284-773 6-542 (556)
9 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-36 3.7E-41 376.3 26.3 415 283-771 246-781 (936)
10 3tbk_A RIG-I helicase domain; 100.0 8.7E-36 3E-40 350.9 31.4 443 284-773 3-541 (555)
11 4a2q_A RIG-I, retinoic acid in 100.0 7.5E-36 2.6E-40 365.1 31.2 439 283-772 246-782 (797)
12 3hgt_A HDA1 complex subunit 3; 100.0 1.8E-36 6.2E-41 318.9 20.1 212 528-747 20-248 (328)
13 2oca_A DAR protein, ATP-depend 100.0 9.7E-34 3.3E-38 330.1 26.3 348 284-744 112-466 (510)
14 4gl2_A Interferon-induced heli 100.0 2.7E-33 9.3E-38 339.1 25.7 426 284-758 6-541 (699)
15 2ykg_A Probable ATP-dependent 100.0 1.5E-32 5.2E-37 332.4 29.2 416 284-741 12-521 (696)
16 3h1t_A Type I site-specific re 100.0 2E-32 7E-37 324.3 20.2 351 283-733 176-558 (590)
17 1xti_A Probable ATP-dependent 100.0 5.3E-30 1.8E-34 287.9 29.9 327 285-748 30-368 (391)
18 1hv8_A Putative ATP-dependent 100.0 7.4E-30 2.5E-34 283.8 24.1 311 285-738 28-347 (367)
19 1s2m_A Putative ATP-dependent 100.0 3.1E-29 1E-33 282.7 27.0 313 285-736 43-365 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 1.8E-28 6.2E-33 277.3 29.3 315 285-736 59-383 (410)
21 2z0m_A 337AA long hypothetical 100.0 2.3E-29 8E-34 276.4 20.9 311 284-746 15-334 (337)
22 3eiq_A Eukaryotic initiation f 100.0 4.9E-29 1.7E-33 282.2 19.5 317 284-736 61-387 (414)
23 1fuu_A Yeast initiation factor 100.0 4.2E-29 1.4E-33 280.7 14.3 315 284-736 42-366 (394)
24 3pey_A ATP-dependent RNA helic 100.0 6.1E-28 2.1E-32 271.1 23.6 308 284-728 26-350 (395)
25 2db3_A ATP-dependent RNA helic 100.0 1E-27 3.5E-32 272.8 24.3 311 285-734 78-405 (434)
26 2i4i_A ATP-dependent RNA helic 100.0 9.4E-28 3.2E-32 272.0 22.2 315 284-736 36-383 (417)
27 3oiy_A Reverse gyrase helicase 99.9 3E-26 1E-30 259.5 29.4 317 284-751 20-376 (414)
28 3fht_A ATP-dependent RNA helic 99.9 1.9E-26 6.6E-31 260.6 27.5 327 284-749 46-391 (412)
29 1oyw_A RECQ helicase, ATP-depe 99.9 1.8E-26 6.2E-31 267.7 25.1 305 284-729 24-338 (523)
30 2v1x_A ATP-dependent DNA helic 99.9 7.4E-26 2.5E-30 265.3 25.2 311 284-730 43-370 (591)
31 3sqw_A ATP-dependent RNA helic 99.9 1.4E-25 4.7E-30 264.9 19.6 325 285-736 43-398 (579)
32 2eyq_A TRCF, transcription-rep 99.9 5.5E-25 1.9E-29 275.6 23.1 310 283-736 601-922 (1151)
33 3i5x_A ATP-dependent RNA helic 99.9 4E-25 1.4E-29 260.5 19.8 334 284-747 93-458 (563)
34 2xgj_A ATP-dependent RNA helic 99.9 4.2E-24 1.4E-28 263.6 28.3 358 283-745 84-508 (1010)
35 3fho_A ATP-dependent RNA helic 99.9 3.8E-26 1.3E-30 265.0 8.9 311 285-730 141-466 (508)
36 3fmp_B ATP-dependent RNA helic 99.9 9.9E-25 3.4E-29 251.9 14.6 309 284-728 113-440 (479)
37 1gm5_A RECG; helicase, replica 99.9 1.2E-24 4.1E-29 260.3 11.0 307 284-728 367-691 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 9.3E-23 3.2E-27 253.9 23.9 360 284-747 183-608 (1108)
39 4a4z_A Antiviral helicase SKI2 99.9 6E-22 2E-26 244.5 27.4 380 278-746 32-502 (997)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.5E-21 5E-26 236.3 26.0 325 285-737 30-409 (715)
41 2p6r_A Afuhel308 helicase; pro 99.9 8.7E-22 3E-26 237.6 23.3 321 285-740 25-392 (702)
42 2zj8_A DNA helicase, putative 99.9 3.2E-22 1.1E-26 242.1 18.7 319 285-740 23-391 (720)
43 4ddu_A Reverse gyrase; topoiso 99.9 5.1E-21 1.8E-25 238.2 25.3 274 285-706 78-388 (1104)
44 2h1e_A Chromo domain protein 1 99.9 1.4E-23 4.9E-28 203.0 1.8 138 99-241 12-176 (177)
45 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7E-21 2.4E-25 233.6 22.3 340 284-734 270-707 (1038)
46 2b2y_A CHD-1, chromodomain-hel 99.9 5.9E-23 2E-27 200.6 2.2 143 97-242 11-185 (187)
47 1gku_B Reverse gyrase, TOP-RG; 99.8 1E-19 3.5E-24 226.7 21.0 316 283-752 55-468 (1054)
48 2v6i_A RNA helicase; membrane, 99.8 5.2E-19 1.8E-23 200.2 11.4 95 623-725 170-281 (431)
49 1tf5_A Preprotein translocase 99.8 1.2E-17 4.1E-22 196.0 22.3 117 606-727 414-538 (844)
50 1rif_A DAR protein, DNA helica 99.8 1.3E-18 4.3E-23 186.0 11.0 163 284-483 112-278 (282)
51 2jlq_A Serine protease subunit 99.7 1.6E-18 5.4E-23 197.6 10.0 95 623-725 187-301 (451)
52 1yks_A Genome polyprotein [con 99.7 3.6E-18 1.2E-22 193.7 11.9 94 622-723 175-287 (440)
53 1t5i_A C_terminal domain of A 99.7 1.8E-17 6.1E-22 163.1 14.0 123 606-735 15-137 (172)
54 1nkt_A Preprotein translocase 99.7 2E-16 6.8E-21 185.3 23.7 117 606-727 442-610 (922)
55 2hjv_A ATP-dependent RNA helic 99.7 1.4E-17 4.8E-22 162.4 11.9 134 606-748 19-152 (163)
56 2fsf_A Preprotein translocase 99.7 1.9E-16 6.6E-21 185.2 23.3 117 606-727 423-576 (853)
57 2z83_A Helicase/nucleoside tri 99.7 5E-18 1.7E-22 193.8 9.7 105 623-736 189-313 (459)
58 2wv9_A Flavivirin protease NS2 99.7 2.8E-18 9.7E-23 202.9 7.7 94 622-723 408-521 (673)
59 2fz4_A DNA repair protein RAD2 99.7 3.8E-17 1.3E-21 169.5 14.6 145 279-471 87-233 (237)
60 2jgn_A DBX, DDX3, ATP-dependen 99.7 1E-17 3.5E-22 166.7 9.7 126 605-736 28-153 (185)
61 2whx_A Serine protease/ntpase/ 99.7 2.6E-17 9E-22 193.4 12.8 104 622-734 353-476 (618)
62 4f92_B U5 small nuclear ribonu 99.7 1.3E-15 4.3E-20 196.5 27.6 320 285-736 926-1308(1724)
63 1fuk_A Eukaryotic initiation f 99.7 8E-17 2.7E-21 157.3 11.8 124 608-738 16-139 (165)
64 2p6n_A ATP-dependent RNA helic 99.7 4.9E-17 1.7E-21 162.6 9.9 123 606-736 39-161 (191)
65 3o8b_A HCV NS3 protease/helica 99.7 7E-18 2.4E-22 196.5 4.3 101 623-738 395-516 (666)
66 4f92_B U5 small nuclear ribonu 99.7 2.1E-15 7.3E-20 194.4 25.5 323 284-739 78-476 (1724)
67 3rc3_A ATP-dependent RNA helic 99.7 2E-16 6.7E-21 186.6 13.1 108 626-735 322-444 (677)
68 2rb4_A ATP-dependent RNA helic 99.7 3.8E-16 1.3E-20 154.1 12.8 123 608-737 20-148 (175)
69 2xau_A PRE-mRNA-splicing facto 99.7 5.6E-16 1.9E-20 186.8 15.9 113 623-738 302-445 (773)
70 2yjt_D ATP-dependent RNA helic 99.4 1.7E-17 5.7E-22 163.0 0.0 118 607-729 15-132 (170)
71 3eaq_A Heat resistant RNA depe 99.6 1.3E-15 4.3E-20 155.2 13.8 133 606-747 15-147 (212)
72 3jux_A Protein translocase sub 99.6 1.4E-14 4.6E-19 166.2 22.9 117 606-727 456-580 (822)
73 2gxq_A Heat resistant RNA depe 99.6 7.7E-15 2.6E-19 148.8 15.1 153 284-466 22-185 (207)
74 1t6n_A Probable ATP-dependent 99.6 1.5E-14 5.3E-19 148.1 16.1 160 285-474 36-207 (220)
75 1c4o_A DNA nucleotide excision 99.6 4.9E-13 1.7E-17 158.8 30.6 125 607-737 422-551 (664)
76 3b6e_A Interferon-induced heli 99.6 3.4E-15 1.2E-19 152.3 9.0 131 283-443 31-177 (216)
77 3i32_A Heat resistant RNA depe 99.6 1.5E-14 5.3E-19 154.3 14.4 125 606-737 12-136 (300)
78 2oxc_A Probable ATP-dependent 99.6 2.6E-14 9E-19 147.5 15.7 151 285-466 46-208 (230)
79 2pl3_A Probable ATP-dependent 99.5 3.8E-14 1.3E-18 146.9 14.7 152 284-466 46-212 (236)
80 1vec_A ATP-dependent RNA helic 99.5 6.2E-14 2.1E-18 142.0 15.8 152 285-466 25-187 (206)
81 1q0u_A Bstdead; DEAD protein, 99.5 6.7E-14 2.3E-18 143.3 15.2 160 284-474 25-198 (219)
82 1wrb_A DJVLGB; RNA helicase, D 99.5 1.4E-13 4.8E-18 144.3 17.1 167 270-466 24-219 (253)
83 1qde_A EIF4A, translation init 99.5 8.6E-14 3E-18 142.9 14.9 152 284-466 35-196 (224)
84 2ee1_A Chromodomain helicase-D 99.5 3E-15 1E-19 117.3 2.6 57 185-241 5-63 (64)
85 3ber_A Probable ATP-dependent 99.5 9.1E-14 3.1E-18 145.2 13.6 153 284-466 64-227 (249)
86 2d7d_A Uvrabc system protein B 99.5 6.9E-12 2.4E-16 148.8 31.0 126 607-738 428-558 (661)
87 3bor_A Human initiation factor 99.5 2E-13 6.7E-18 141.6 14.1 153 285-466 52-214 (237)
88 1fp0_A KAP-1 corepressor; PHD 99.5 3.4E-14 1.2E-18 118.7 5.7 52 47-98 21-72 (88)
89 3iuy_A Probable ATP-dependent 99.4 8.1E-13 2.8E-17 136.1 15.4 153 284-466 41-208 (228)
90 1mm2_A MI2-beta; PHD, zinc fin 99.4 5.7E-14 2E-18 110.7 5.0 52 47-98 5-56 (61)
91 2lri_C Autoimmune regulator; Z 99.4 5.8E-14 2E-18 111.9 4.2 51 49-99 10-60 (66)
92 2epb_A Chromodomain-helicase-D 99.4 3.2E-14 1.1E-18 114.2 2.6 55 186-242 6-66 (68)
93 3dkp_A Probable ATP-dependent 99.4 9.1E-13 3.1E-17 137.3 12.7 153 285-466 51-220 (245)
94 2yql_A PHD finger protein 21A; 99.4 1.2E-13 4.2E-18 107.0 3.2 50 48-97 6-55 (56)
95 1xwh_A Autoimmune regulator; P 99.4 1.2E-13 4E-18 111.1 3.1 50 48-97 5-54 (66)
96 2puy_A PHD finger protein 21A; 99.4 5.6E-14 1.9E-18 110.8 1.1 50 49-98 3-52 (60)
97 3fe2_A Probable ATP-dependent 99.4 4E-12 1.4E-16 132.2 14.4 153 284-466 50-217 (242)
98 2l5u_A Chromodomain-helicase-D 99.4 2.2E-13 7.4E-18 107.4 3.2 50 48-97 8-57 (61)
99 3ly5_A ATP-dependent RNA helic 99.4 2.4E-12 8.2E-17 135.5 12.2 152 285-466 76-242 (262)
100 2ipc_A Preprotein translocase 99.3 1.2E-10 4E-15 136.3 21.8 144 283-476 77-237 (997)
101 2vl7_A XPD; helicase, unknown 99.3 1.8E-10 6.3E-15 133.8 21.9 92 611-709 370-466 (540)
102 3u5n_A E3 ubiquitin-protein li 99.2 2.7E-12 9.2E-17 129.1 4.8 53 47-99 3-55 (207)
103 1f62_A Transcription factor WS 99.2 2.3E-12 8E-17 98.0 3.2 45 53-97 2-49 (51)
104 3o36_A Transcription intermedi 99.2 5.1E-12 1.7E-16 124.8 5.2 51 49-99 2-52 (184)
105 2e6r_A Jumonji/ARID domain-con 99.2 5.7E-12 1.9E-16 108.0 2.9 50 48-97 13-65 (92)
106 3fmo_B ATP-dependent RNA helic 99.2 1.8E-10 6.1E-15 123.6 13.6 152 284-466 113-277 (300)
107 1wev_A Riken cDNA 1110020M19; 99.2 3.2E-12 1.1E-16 108.7 -0.0 51 50-100 15-74 (88)
108 2e6s_A E3 ubiquitin-protein li 99.1 2.6E-11 8.8E-16 99.8 4.8 46 52-97 27-76 (77)
109 2yt5_A Metal-response element- 99.1 1E-11 3.6E-16 100.1 1.9 51 48-98 3-61 (66)
110 2ro1_A Transcription intermedi 99.1 2.3E-11 7.8E-16 119.8 4.6 49 51-99 2-50 (189)
111 3asl_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 98.2 3.9 45 53-97 20-68 (70)
112 2ku3_A Bromodomain-containing 99.1 3.1E-11 1.1E-15 97.6 1.9 49 47-97 12-65 (71)
113 3shb_A E3 ubiquitin-protein li 99.1 7.9E-11 2.7E-15 96.6 4.2 45 53-97 28-76 (77)
114 2l43_A N-teminal domain from h 99.1 3.3E-11 1.1E-15 102.2 1.9 47 49-97 23-74 (88)
115 3ask_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 113.7 3.8 47 51-97 174-224 (226)
116 4gne_A Histone-lysine N-methyl 99.0 3.7E-10 1.3E-14 98.7 5.1 66 47-114 11-78 (107)
117 2lbm_A Transcriptional regulat 99.0 1.2E-10 4.2E-15 106.8 1.6 52 46-97 58-116 (142)
118 3v43_A Histone acetyltransfera 98.9 7.1E-10 2.4E-14 99.4 4.7 48 50-97 60-111 (112)
119 2kwj_A Zinc finger protein DPF 98.9 7.1E-10 2.4E-14 99.6 3.1 48 50-97 57-107 (114)
120 2dnt_A Chromodomain protein, Y 98.9 8.7E-10 3E-14 91.4 3.1 56 190-245 12-68 (78)
121 2k16_A Transcription initiatio 98.8 6.5E-10 2.2E-14 92.0 1.4 50 48-97 15-67 (75)
122 3f2u_A Chromobox protein homol 98.8 5.6E-10 1.9E-14 85.8 0.2 51 192-243 3-53 (55)
123 2rsn_A Chromo domain-containin 98.8 9.3E-10 3.2E-14 90.0 1.5 53 190-242 20-73 (75)
124 1q3l_A Heterochromatin protein 98.8 7.1E-10 2.4E-14 88.7 0.2 51 191-242 16-66 (69)
125 2ysm_A Myeloid/lymphoid or mix 98.8 2.2E-09 7.5E-14 96.3 2.8 49 50-98 53-104 (111)
126 3mts_A Histone-lysine N-methyl 98.7 2.2E-09 7.7E-14 84.8 1.6 50 193-243 2-51 (64)
127 2b2y_C CHD-1, chromodomain-hel 98.7 5.8E-09 2E-13 90.9 4.3 75 99-176 13-100 (115)
128 2dnv_A Chromobox protein homol 98.7 2.4E-09 8.4E-14 85.0 1.6 50 192-242 11-60 (64)
129 3fdt_A Chromobox protein homol 98.7 1.4E-09 4.8E-14 84.8 -0.4 51 192-243 4-54 (59)
130 3ql9_A Transcriptional regulat 98.7 1.2E-09 4.2E-14 98.3 -1.0 52 46-97 52-110 (129)
131 3lwe_A M-phase phosphoprotein 98.7 1.5E-09 5.2E-14 85.6 -0.5 54 192-245 5-58 (62)
132 3i91_A Chromobox protein homol 98.7 2.2E-09 7.6E-14 82.2 0.4 49 192-241 4-52 (54)
133 1g6z_A CLR4 protein; transfera 98.7 5.5E-09 1.9E-13 84.6 2.5 53 192-244 9-63 (70)
134 1wen_A Inhibitor of growth fam 98.7 1.4E-08 4.9E-13 82.1 4.8 46 50-98 15-65 (71)
135 1ap0_A Modifier protein 1; chr 98.7 4.5E-09 1.5E-13 85.8 1.8 50 192-242 14-63 (73)
136 1weu_A Inhibitor of growth fam 98.7 4E-08 1.4E-12 83.0 7.1 48 48-98 33-85 (91)
137 3llm_A ATP-dependent RNA helic 98.7 2.3E-08 8E-13 103.0 7.0 150 285-467 61-219 (235)
138 1pfb_A Polycomb protein; chrom 98.6 2.9E-09 9.8E-14 81.9 -0.3 49 192-241 4-52 (55)
139 3crv_A XPD/RAD3 related DNA he 98.6 7.2E-08 2.4E-12 112.3 11.3 80 284-367 2-84 (551)
140 3h91_A Chromobox protein homol 98.6 3.6E-09 1.2E-13 81.0 0.2 49 192-241 4-52 (54)
141 2d9u_A Chromobox protein homol 98.6 6.1E-09 2.1E-13 85.2 1.5 52 192-244 11-62 (74)
142 3c6w_A P28ING5, inhibitor of g 98.6 9.5E-09 3.3E-13 79.9 2.0 46 49-97 7-57 (59)
143 2ysm_A Myeloid/lymphoid or mix 98.6 2.3E-08 7.9E-13 89.6 4.6 49 48-96 4-55 (111)
144 1x3p_A Cpsrp43; chromo-2 domai 98.6 5.1E-09 1.7E-13 79.6 0.2 45 193-241 2-48 (54)
145 2vnf_A ING 4, P29ING4, inhibit 98.6 1E-08 3.5E-13 80.2 1.9 46 49-97 8-58 (60)
146 1pdq_A Polycomb protein; methy 98.6 4.2E-09 1.4E-13 84.9 -0.5 49 192-241 21-69 (72)
147 2k1b_A Chromobox protein homol 98.6 9E-09 3.1E-13 83.3 1.4 49 192-241 22-70 (73)
148 4hae_A CDY-like 2, chromodomai 98.6 6.9E-10 2.4E-14 92.1 -5.4 54 188-241 20-74 (81)
149 2g6q_A Inhibitor of growth pro 98.6 1.5E-08 5.2E-13 79.5 2.1 46 49-97 9-59 (62)
150 2kvm_A Chromobox protein homol 98.6 1.4E-08 4.8E-13 83.1 1.8 52 192-244 14-65 (74)
151 2lv9_A Histone-lysine N-methyl 98.5 6.4E-08 2.2E-12 84.0 4.0 45 53-98 32-76 (98)
152 3g7l_A Chromo domain-containin 98.5 2.6E-08 8.8E-13 78.2 0.8 49 192-241 8-57 (61)
153 2jmi_A Protein YNG1, ING1 homo 98.5 7E-08 2.4E-12 81.3 3.4 47 48-97 23-75 (90)
154 2rso_A Chromatin-associated pr 98.4 6.8E-08 2.3E-12 82.3 2.7 53 192-244 31-86 (92)
155 3mts_A Histone-lysine N-methyl 98.4 7.4E-08 2.5E-12 76.1 1.3 40 100-155 1-40 (64)
156 2dnv_A Chromobox protein homol 98.3 8.5E-08 2.9E-12 76.1 1.1 51 100-174 11-61 (64)
157 3h91_A Chromobox protein homol 98.3 8.5E-08 2.9E-12 73.3 0.6 50 100-173 4-53 (54)
158 3i91_A Chromobox protein homol 98.3 9.9E-08 3.4E-12 72.9 0.7 49 101-173 5-53 (54)
159 3f2u_A Chromobox protein homol 98.3 1E-07 3.6E-12 73.1 0.6 49 101-173 4-52 (55)
160 2d9u_A Chromobox protein homol 98.3 2E-07 6.9E-12 76.2 2.0 52 99-174 10-61 (74)
161 1q3l_A Heterochromatin protein 98.3 1.2E-07 4.1E-12 75.8 0.6 50 100-173 17-66 (69)
162 1pfb_A Polycomb protein; chrom 98.3 1.3E-07 4.3E-12 72.7 0.4 49 101-173 5-53 (55)
163 2k1b_A Chromobox protein homol 98.2 1.5E-07 5.2E-12 76.1 0.4 50 100-173 22-71 (73)
164 3lwe_A M-phase phosphoprotein 98.2 3.7E-07 1.3E-11 71.9 2.1 52 100-174 5-56 (62)
165 2rsn_A Chromo domain-containin 98.2 3.9E-07 1.3E-11 74.4 2.1 52 100-173 22-73 (75)
166 1g6z_A CLR4 protein; transfera 98.2 5.9E-07 2E-11 72.7 3.0 54 100-175 9-63 (70)
167 2epb_A Chromodomain-helicase-D 98.2 5E-07 1.7E-11 72.3 2.5 55 100-173 12-66 (68)
168 3fdt_A Chromobox protein homol 98.2 2.2E-07 7.4E-12 72.4 0.2 50 101-174 5-54 (59)
169 1pdq_A Polycomb protein; methy 98.2 2.1E-07 7.3E-12 74.9 0.0 49 100-172 21-69 (72)
170 3g7l_A Chromo domain-containin 98.2 3.8E-07 1.3E-11 71.5 1.2 41 100-155 8-48 (61)
171 1wil_A KIAA1045 protein; ring 98.2 4.9E-07 1.7E-11 72.6 1.5 48 50-97 14-75 (89)
172 4a15_A XPD helicase, ATP-depen 98.1 1.7E-06 5.8E-11 101.7 6.7 84 285-368 3-89 (620)
173 1ap0_A Modifier protein 1; chr 98.1 4.5E-07 1.5E-11 73.9 1.0 52 100-175 14-65 (73)
174 2kvm_A Chromobox protein homol 98.1 4.6E-07 1.6E-11 74.1 1.0 51 100-174 14-64 (74)
175 2ee1_A Chromodomain helicase-D 98.1 7.7E-07 2.6E-11 69.7 2.2 52 100-172 12-63 (64)
176 2dnt_A Chromodomain protein, Y 98.1 8.9E-07 3E-11 73.2 1.4 54 100-175 14-67 (78)
177 1x4i_A Inhibitor of growth pro 98.0 1.7E-06 5.9E-11 69.6 1.8 45 50-97 5-54 (70)
178 2kwj_A Zinc finger protein DPF 98.0 8.5E-07 2.9E-11 79.5 -0.1 45 52-96 2-59 (114)
179 3o70_A PHD finger protein 13; 98.0 3.4E-06 1.2E-10 67.5 3.1 48 48-97 16-66 (68)
180 1x3p_A Cpsrp43; chromo-2 domai 97.9 1.5E-06 5.1E-11 65.9 0.2 47 101-173 2-49 (54)
181 2rso_A Chromatin-associated pr 97.9 5.3E-06 1.8E-10 70.6 3.2 55 100-175 31-86 (92)
182 1we9_A PHD finger family prote 97.8 6.6E-06 2.3E-10 65.4 2.4 50 49-98 4-58 (64)
183 4hae_A CDY-like 2, chromodomai 97.8 4.9E-06 1.7E-10 69.0 1.0 40 100-154 24-63 (81)
184 1wee_A PHD finger family prote 97.7 1.1E-05 3.8E-10 65.7 1.5 48 49-97 14-65 (72)
185 2vpb_A Hpygo1, pygopus homolog 97.7 5.1E-06 1.8E-10 65.7 -0.5 45 50-96 7-64 (65)
186 3v43_A Histone acetyltransfera 97.6 5.2E-06 1.8E-10 74.1 -0.8 45 52-96 6-62 (112)
187 2xb1_A Pygopus homolog 2, B-ce 97.6 1.5E-05 5.3E-10 69.8 1.1 45 52-98 4-61 (105)
188 2ri7_A Nucleosome-remodeling f 97.6 7.5E-06 2.6E-10 79.7 -1.1 49 48-97 5-58 (174)
189 1wem_A Death associated transc 97.5 7.6E-06 2.6E-10 67.5 -1.5 46 50-98 15-70 (76)
190 1wep_A PHF8; structural genomi 97.4 3.7E-05 1.3E-09 63.8 1.8 49 50-99 11-64 (79)
191 1wew_A DNA-binding family prot 97.4 3.8E-05 1.3E-09 63.5 1.3 45 50-97 15-71 (78)
192 3upu_A ATP-dependent DNA helic 97.3 0.0014 4.8E-08 74.1 13.8 63 284-346 24-87 (459)
193 2b2y_C CHD-1, chromodomain-hel 97.3 7.8E-05 2.7E-09 65.1 2.1 52 190-241 35-96 (115)
194 4b3f_X DNA-binding protein smu 97.3 0.0014 4.9E-08 77.5 13.3 68 284-355 188-256 (646)
195 3e1s_A Exodeoxyribonuclease V, 97.2 0.0014 4.9E-08 75.9 12.8 132 283-469 187-318 (574)
196 2gk6_A Regulator of nonsense t 97.2 0.0022 7.6E-08 75.4 14.2 169 284-469 179-376 (624)
197 2b2y_A CHD-1, chromodomain-hel 97.2 0.00022 7.4E-09 69.4 4.4 54 101-173 132-185 (187)
198 2rsd_A E3 SUMO-protein ligase 97.2 0.00014 4.9E-09 58.3 2.5 42 52-96 11-63 (68)
199 2kgg_A Histone demethylase jar 97.1 7.1E-05 2.4E-09 56.5 -0.1 41 54-96 5-52 (52)
200 2wjy_A Regulator of nonsense t 97.1 0.004 1.4E-07 75.0 15.0 169 284-469 355-552 (800)
201 3kqi_A GRC5, PHD finger protei 97.1 0.00012 4E-09 60.0 0.9 48 50-98 9-61 (75)
202 2h1e_A Chromo domain protein 1 97.0 0.00021 7.1E-09 68.9 2.3 56 100-172 121-176 (177)
203 3o7a_A PHD finger protein 13 v 97.0 0.00022 7.5E-09 53.8 1.7 43 53-97 6-51 (52)
204 2xzl_A ATP-dependent helicase 97.0 0.0045 1.5E-07 74.6 14.1 168 284-469 359-554 (802)
205 1w36_D RECD, exodeoxyribonucle 96.7 0.0068 2.3E-07 70.9 12.3 150 287-472 151-304 (608)
206 3kv5_D JMJC domain-containing 96.5 0.00033 1.1E-08 78.6 -0.5 49 48-99 34-89 (488)
207 3lfu_A DNA helicase II; SF1 he 96.4 0.072 2.5E-06 62.8 18.8 66 285-356 9-78 (647)
208 2o0j_A Terminase, DNA packagin 96.1 0.016 5.4E-07 63.3 9.7 68 284-355 162-231 (385)
209 3pur_A Lysine-specific demethy 96.1 0.002 7E-08 71.4 2.7 37 62-98 57-94 (528)
210 3lqh_A Histone-lysine N-methyl 95.9 0.0019 6.6E-08 62.3 1.3 49 52-100 3-65 (183)
211 3mwy_W Chromo domain-containin 95.9 0.001 3.5E-08 80.8 -1.2 39 192-230 38-95 (800)
212 3kup_A Chromobox protein homol 95.8 0.0011 3.7E-08 52.3 -0.9 33 192-224 13-45 (65)
213 2orw_A Thymidine kinase; TMTK, 95.7 0.026 8.8E-07 55.0 8.6 37 305-342 4-40 (184)
214 3a1b_A DNA (cytosine-5)-methyl 95.6 0.0033 1.1E-07 58.2 1.4 62 46-109 74-143 (159)
215 3cpe_A Terminase, DNA packagin 95.4 0.037 1.3E-06 64.5 9.6 69 284-356 162-232 (592)
216 2b8t_A Thymidine kinase; deoxy 95.2 0.16 5.4E-06 50.9 12.5 39 303-342 11-49 (223)
217 1a5t_A Delta prime, HOLB; zinc 95.2 0.15 5.2E-06 54.6 13.1 46 286-331 3-51 (334)
218 4gne_A Histone-lysine N-methyl 94.9 0.011 3.9E-07 51.4 2.6 38 54-92 61-98 (107)
219 4bbq_A Lysine-specific demethy 94.9 0.009 3.1E-07 53.5 1.9 35 63-97 75-113 (117)
220 2j9r_A Thymidine kinase; TK1, 94.9 0.09 3.1E-06 52.0 9.3 35 308-343 32-66 (214)
221 2fmm_A Chromobox protein homol 94.8 0.0026 8.8E-08 51.5 -1.7 48 192-241 16-64 (74)
222 3vkw_A Replicase large subunit 94.7 0.041 1.4E-06 60.7 7.0 108 307-469 164-272 (446)
223 3kv4_A PHD finger protein 8; e 94.5 0.0036 1.2E-07 69.1 -2.0 43 54-98 7-56 (447)
224 3i3c_A Chromobox protein homol 94.4 0.0024 8.3E-08 51.6 -2.6 32 192-223 23-54 (75)
225 4a15_A XPD helicase, ATP-depen 94.4 0.096 3.3E-06 61.2 9.6 79 622-707 446-528 (620)
226 3p7j_A Heterochromatin protein 94.3 0.0036 1.2E-07 51.9 -2.0 35 192-226 26-60 (87)
227 3q6s_A Chromobox protein homol 94.3 0.0042 1.4E-07 50.7 -1.6 32 192-223 10-41 (78)
228 1xx6_A Thymidine kinase; NESG, 93.9 0.12 4E-06 50.6 7.7 37 305-342 9-45 (191)
229 3u61_B DNA polymerase accessor 93.9 0.35 1.2E-05 51.3 12.2 51 428-478 105-157 (324)
230 3rsn_A SET1/ASH2 histone methy 93.9 0.039 1.3E-06 52.2 4.0 45 52-97 6-58 (177)
231 2pv0_B DNA (cytosine-5)-methyl 93.7 0.019 6.6E-07 61.4 1.7 60 47-108 89-156 (386)
232 2orv_A Thymidine kinase; TP4A 93.3 0.33 1.1E-05 48.5 9.7 37 305-342 20-56 (234)
233 3syl_A Protein CBBX; photosynt 93.2 0.055 1.9E-06 57.2 4.2 40 304-343 67-109 (309)
234 1l8q_A Chromosomal replication 93.1 0.51 1.8E-05 50.1 11.7 41 303-344 36-76 (324)
235 2chg_A Replication factor C sm 93.0 1.1 3.6E-05 44.0 13.3 27 305-331 39-65 (226)
236 2p65_A Hypothetical protein PF 92.1 1 3.5E-05 42.7 11.6 27 304-330 43-69 (187)
237 2gno_A DNA polymerase III, gam 92.0 0.58 2E-05 49.3 10.2 38 290-327 2-41 (305)
238 3bos_A Putative DNA replicatio 91.8 0.31 1.1E-05 48.8 7.6 29 303-331 51-79 (242)
239 1njg_A DNA polymerase III subu 91.4 1 3.4E-05 44.8 10.9 44 287-330 28-71 (250)
240 1jbk_A CLPB protein; beta barr 91.3 1.3 4.4E-05 42.1 11.3 28 303-330 42-69 (195)
241 1iqp_A RFCS; clamp loader, ext 90.3 1.1 3.7E-05 47.2 10.4 24 306-329 48-71 (327)
242 1sxj_D Activator 1 41 kDa subu 90.0 0.56 1.9E-05 50.2 8.0 25 305-329 59-83 (353)
243 3e2i_A Thymidine kinase; Zn-bi 90.0 0.94 3.2E-05 44.7 8.6 37 306-343 30-66 (219)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.9 0.1 3.4E-06 47.9 1.6 36 63-98 2-44 (140)
245 2qby_B CDC6 homolog 3, cell di 89.7 0.6 2E-05 50.7 8.0 44 287-330 25-71 (384)
246 1w4r_A Thymidine kinase; type 89.7 0.78 2.7E-05 44.6 7.7 38 304-342 20-57 (195)
247 2z4s_A Chromosomal replication 89.4 1.5 5.2E-05 48.7 11.1 39 304-342 130-169 (440)
248 3eie_A Vacuolar protein sortin 89.3 0.34 1.2E-05 51.5 5.5 37 304-344 51-87 (322)
249 1sxj_B Activator 1 37 kDa subu 89.2 1.3 4.5E-05 46.5 10.0 25 306-330 44-68 (323)
250 2chq_A Replication factor C sm 88.3 0.41 1.4E-05 50.4 5.2 25 306-330 40-64 (319)
251 1sxj_C Activator 1 40 kDa subu 88.3 1.5 5E-05 46.9 9.7 40 291-330 31-72 (340)
252 2qp9_X Vacuolar protein sortin 88.3 0.47 1.6E-05 51.2 5.7 35 304-342 84-118 (355)
253 1jr3_A DNA polymerase III subu 87.3 3.1 0.00011 44.7 11.6 25 306-330 40-64 (373)
254 2bjv_A PSP operon transcriptio 87.2 1.8 6.2E-05 44.2 9.3 48 295-343 20-67 (265)
255 1xwi_A SKD1 protein; VPS4B, AA 86.8 0.58 2E-05 49.7 5.2 39 304-345 45-83 (322)
256 3h4m_A Proteasome-activating n 86.6 0.68 2.3E-05 48.0 5.6 39 302-344 49-87 (285)
257 2v1u_A Cell division control p 86.5 1.5 5.1E-05 47.4 8.5 44 287-330 24-70 (387)
258 2qz4_A Paraplegin; AAA+, SPG7, 85.5 2.3 7.8E-05 43.1 8.9 37 303-343 38-74 (262)
259 1sxj_E Activator 1 40 kDa subu 85.3 3.4 0.00012 44.0 10.6 43 290-332 19-64 (354)
260 2zan_A Vacuolar protein sortin 85.2 0.85 2.9E-05 50.8 5.8 43 303-348 166-208 (444)
261 3t15_A Ribulose bisphosphate c 85.2 1.1 3.7E-05 46.9 6.3 37 304-344 36-72 (293)
262 1fnn_A CDC6P, cell division co 85.2 5.1 0.00018 43.1 12.1 54 287-340 22-80 (389)
263 2ct0_A Non-SMC element 1 homol 83.9 0.43 1.5E-05 38.5 1.9 46 50-97 14-60 (74)
264 3kup_A Chromobox protein homol 83.6 0.63 2.1E-05 36.4 2.6 23 130-154 27-49 (65)
265 1vyx_A ORF K3, K3RING; zinc-bi 83.3 0.11 3.7E-06 40.1 -1.9 48 49-98 4-56 (60)
266 1sxj_A Activator 1 95 kDa subu 82.9 4.1 0.00014 46.2 10.3 25 304-328 77-101 (516)
267 3vfd_A Spastin; ATPase, microt 82.2 1.4 4.9E-05 48.0 5.9 41 304-348 148-188 (389)
268 2d8s_A Cellular modulator of i 82.2 0.34 1.2E-05 39.8 0.7 48 50-99 14-68 (80)
269 3ec2_A DNA replication protein 81.3 2.2 7.5E-05 40.6 6.3 63 287-349 16-83 (180)
270 1uaa_A REP helicase, protein ( 80.9 1.7 5.9E-05 51.2 6.4 66 285-356 2-71 (673)
271 2fmm_A Chromobox protein homol 80.8 1.3 4.4E-05 35.6 3.6 34 130-171 30-63 (74)
272 3cf0_A Transitional endoplasmi 80.7 1.4 4.8E-05 46.2 5.0 39 302-344 47-85 (301)
273 3d8b_A Fidgetin-like protein 1 80.6 1.2 4.1E-05 48.0 4.5 38 303-344 116-153 (357)
274 1iym_A EL5; ring-H2 finger, ub 80.3 0.98 3.4E-05 33.6 2.7 44 51-98 5-52 (55)
275 3pvs_A Replication-associated 80.2 2 7E-05 47.7 6.3 24 305-328 51-74 (447)
276 2cvh_A DNA repair and recombin 79.9 6.4 0.00022 38.4 9.4 54 293-350 8-64 (220)
277 2qby_A CDC6 homolog 1, cell di 79.8 2.2 7.4E-05 46.0 6.3 44 287-330 25-71 (386)
278 2w58_A DNAI, primosome compone 77.3 3 0.0001 40.4 5.9 34 305-339 55-88 (202)
279 3kl4_A SRP54, signal recogniti 76.7 5.2 0.00018 44.0 8.1 37 306-342 99-135 (433)
280 3crv_A XPD/RAD3 related DNA he 76.4 13 0.00044 42.4 11.8 101 611-721 379-487 (551)
281 1pjr_A PCRA; DNA repair, DNA r 76.2 3.7 0.00013 48.8 7.3 65 285-355 11-79 (724)
282 1x4j_A Ring finger protein 38; 76.0 0.53 1.8E-05 37.9 -0.1 47 50-100 22-71 (75)
283 3dm5_A SRP54, signal recogniti 74.3 5.1 0.00017 44.2 7.2 34 306-340 102-135 (443)
284 1gm5_A RECG; helicase, replica 73.8 12 0.00041 44.5 10.8 97 606-705 399-500 (780)
285 2kiz_A E3 ubiquitin-protein li 73.2 0.6 2E-05 36.8 -0.4 45 50-98 13-60 (69)
286 3hu3_A Transitional endoplasmi 72.7 2.9 0.0001 47.0 5.0 36 302-341 236-271 (489)
287 1g5t_A COB(I)alamin adenosyltr 72.4 9.7 0.00033 36.9 7.9 37 303-340 27-63 (196)
288 2ect_A Ring finger protein 126 71.4 2.2 7.5E-05 34.4 2.6 46 50-99 14-62 (78)
289 1qvr_A CLPB protein; coiled co 71.4 14 0.00047 44.8 10.8 28 303-330 190-217 (854)
290 4bbq_A Lysine-specific demethy 70.4 1 3.6E-05 39.8 0.4 37 50-97 6-42 (117)
291 1r6b_X CLPA protein; AAA+, N-t 70.0 21 0.00073 42.4 12.0 28 303-330 206-233 (758)
292 2px0_A Flagellar biosynthesis 69.8 12 0.00042 38.8 8.7 37 304-340 105-141 (296)
293 2ce7_A Cell division protein F 69.5 8.1 0.00028 43.1 7.6 35 304-342 49-83 (476)
294 3nw0_A Non-structural maintena 68.6 1.8 6E-05 43.6 1.7 46 50-97 179-225 (238)
295 1xp8_A RECA protein, recombina 68.6 9.2 0.00032 41.1 7.6 55 293-348 61-117 (366)
296 4b4t_J 26S protease regulatory 68.5 3.5 0.00012 44.8 4.2 49 301-353 179-227 (405)
297 2ecl_A Ring-box protein 2; RNF 68.1 1.6 5.4E-05 35.8 1.0 30 65-98 44-73 (81)
298 1e0b_A SWI6 protein; chromatin 67.8 1 3.4E-05 35.5 -0.2 25 192-216 11-36 (68)
299 3u4q_A ATP-dependent helicase/ 67.6 7.2 0.00025 49.3 7.4 54 283-342 8-66 (1232)
300 2qgz_A Helicase loader, putati 67.6 5.5 0.00019 41.7 5.5 35 304-339 152-187 (308)
301 3k1l_B Fancl; UBC, ring, RWD, 67.5 0.84 2.9E-05 47.8 -0.9 49 50-98 307-370 (381)
302 2l0b_A E3 ubiquitin-protein li 67.3 1.4 4.8E-05 36.9 0.6 46 49-98 38-86 (91)
303 3cf2_A TER ATPase, transitiona 67.0 4.2 0.00014 48.4 4.8 43 303-349 510-552 (806)
304 2zts_A Putative uncharacterize 66.3 7.1 0.00024 38.9 5.9 53 302-354 28-80 (251)
305 4b4t_M 26S protease regulatory 66.2 3.5 0.00012 45.4 3.6 47 302-352 213-259 (434)
306 3i3c_A Chromobox protein homol 66.1 2.7 9.2E-05 33.8 2.0 23 130-154 37-59 (75)
307 4b4t_L 26S protease subunit RP 65.5 3.6 0.00012 45.3 3.6 47 302-352 213-259 (437)
308 2zr9_A Protein RECA, recombina 65.1 12 0.00041 39.9 7.6 55 293-348 48-104 (349)
309 2ep4_A Ring finger protein 24; 64.7 1 3.6E-05 35.9 -0.7 47 51-101 15-64 (74)
310 1bor_A Transcription factor PM 64.6 8.9 0.00031 28.5 4.7 44 49-99 4-47 (56)
311 2ecm_A Ring finger and CHY zin 64.6 1.3 4.5E-05 32.8 -0.1 45 50-98 4-52 (55)
312 3hjh_A Transcription-repair-co 64.1 9.7 0.00033 42.6 6.8 68 622-704 380-447 (483)
313 1v87_A Deltex protein 2; ring- 64.0 1.6 5.5E-05 38.2 0.3 34 66-99 58-92 (114)
314 4dzz_A Plasmid partitioning pr 63.9 22 0.00076 33.9 8.8 30 310-340 8-37 (206)
315 2zpa_A Uncharacterized protein 63.9 14 0.00049 42.7 8.3 54 284-343 174-227 (671)
316 2q6t_A DNAB replication FORK h 63.8 13 0.00043 41.2 7.7 60 293-352 189-248 (444)
317 3bh0_A DNAB-like replicative h 63.7 18 0.00062 37.8 8.6 60 293-353 57-116 (315)
318 2lq6_A Bromodomain-containing 62.8 2.4 8.4E-05 35.2 1.2 29 51-79 17-49 (87)
319 3n70_A Transport activator; si 62.6 12 0.00041 34.0 6.1 44 296-340 16-59 (145)
320 4b4t_I 26S protease regulatory 62.5 4.7 0.00016 44.1 3.7 48 302-353 214-261 (437)
321 3p7j_A Heterochromatin protein 61.7 4.3 0.00015 33.5 2.4 23 130-154 40-62 (87)
322 4b4t_K 26S protease regulatory 61.3 4.7 0.00016 44.3 3.5 46 302-351 204-249 (428)
323 3oiy_A Reverse gyrase helicase 60.9 26 0.00088 38.0 9.6 97 606-704 46-148 (414)
324 4b4t_H 26S protease regulatory 60.6 4.7 0.00016 44.6 3.3 47 302-352 241-287 (467)
325 6rxn_A Rubredoxin; electron tr 60.5 4.6 0.00016 29.0 2.1 34 64-98 5-39 (46)
326 4a0k_B E3 ubiquitin-protein li 60.0 2.1 7.3E-05 37.8 0.4 27 68-98 83-109 (117)
327 3q6s_A Chromobox protein homol 58.7 5.1 0.00017 32.4 2.4 23 130-154 24-46 (78)
328 2c9o_A RUVB-like 1; hexameric 58.5 6.8 0.00023 43.6 4.3 44 303-348 62-105 (456)
329 1weq_A PHD finger protein 7; s 58.3 8.5 0.00029 31.6 3.6 34 63-99 46-80 (85)
330 2z43_A DNA repair and recombin 58.3 25 0.00085 36.9 8.5 45 300-344 103-152 (324)
331 3dpl_R Ring-box protein 1; ubi 57.9 2.4 8.3E-05 36.7 0.4 29 66-98 70-98 (106)
332 2r6a_A DNAB helicase, replicat 56.7 17 0.0006 40.2 7.3 59 293-351 192-250 (454)
333 2ysl_A Tripartite motif-contai 56.5 6.6 0.00022 30.9 2.8 48 50-99 19-67 (73)
334 2yur_A Retinoblastoma-binding 56.1 3.5 0.00012 32.8 1.0 54 50-105 14-68 (74)
335 1chc_A Equine herpes virus-1 r 55.7 2.6 8.7E-05 32.9 0.1 46 51-100 5-51 (68)
336 2ecn_A Ring finger protein 141 55.6 1.9 6.4E-05 33.9 -0.7 45 51-100 15-59 (70)
337 3bgw_A DNAB-like replicative h 54.2 16 0.00056 40.3 6.5 59 293-352 186-244 (444)
338 2r44_A Uncharacterized protein 52.9 7.7 0.00026 40.8 3.4 32 297-328 39-70 (331)
339 3co5_A Putative two-component 52.6 8.9 0.0003 34.8 3.4 47 301-352 24-70 (143)
340 1e8j_A Rubredoxin; iron-sulfur 52.5 17 0.00058 26.8 4.1 36 64-100 4-47 (52)
341 4a1f_A DNAB helicase, replicat 52.5 26 0.0009 37.0 7.4 58 293-351 35-92 (338)
342 2ecy_A TNF receptor-associated 52.3 3.2 0.00011 32.1 0.2 45 51-99 15-60 (66)
343 2d8t_A Dactylidin, ring finger 52.2 4.7 0.00016 31.7 1.2 45 50-99 14-59 (71)
344 2r8r_A Sensor protein; KDPD, P 51.8 16 0.00055 36.2 5.2 44 306-349 8-52 (228)
345 1tue_A Replication protein E1; 51.7 14 0.00049 36.0 4.7 24 305-328 59-82 (212)
346 3uk6_A RUVB-like 2; hexameric 51.5 15 0.00051 39.1 5.5 53 287-341 49-105 (368)
347 3lrq_A E3 ubiquitin-protein li 49.7 2.3 7.8E-05 36.4 -1.2 47 50-99 21-68 (100)
348 4rxn_A Rubredoxin; electron tr 49.6 9.8 0.00034 28.3 2.4 35 64-99 4-46 (54)
349 1q57_A DNA primase/helicase; d 49.3 21 0.00072 40.0 6.5 58 294-351 232-289 (503)
350 2l82_A Designed protein OR32; 49.0 57 0.002 27.4 7.2 49 626-674 4-52 (162)
351 2ckl_B Ubiquitin ligase protei 48.9 4 0.00014 38.4 0.3 47 50-99 53-100 (165)
352 1ofh_A ATP-dependent HSL prote 48.8 21 0.00072 36.7 6.0 26 303-328 49-74 (310)
353 2dr3_A UPF0273 protein PH0284; 48.1 30 0.001 34.1 6.8 52 301-353 20-71 (247)
354 3m9q_A Protein MALE-specific l 47.9 3.5 0.00012 35.1 -0.2 25 130-154 58-82 (101)
355 2egp_A Tripartite motif-contai 47.3 17 0.00058 28.9 3.9 49 51-100 12-64 (79)
356 2lnd_A De novo designed protei 46.9 79 0.0027 25.0 7.3 61 611-672 38-100 (112)
357 3ui2_A Signal recognition part 46.5 7.8 0.00027 38.7 2.1 46 192-241 187-232 (244)
358 3ng2_A RNF4, snurf, ring finge 46.4 4 0.00014 31.9 -0.1 46 50-99 9-61 (71)
359 3te6_A Regulatory protein SIR3 46.0 20 0.00068 37.6 5.2 44 287-330 25-71 (318)
360 4ddu_A Reverse gyrase; topoiso 45.6 57 0.002 40.5 10.0 97 606-704 103-205 (1104)
361 2lrq_A Protein MRG15, NUA4 com 51.3 4.4 0.00015 33.4 0.0 25 131-155 42-66 (85)
362 3ipz_A Monothiol glutaredoxin- 45.1 75 0.0026 27.0 8.0 55 615-670 9-69 (109)
363 2eyq_A TRCF, transcription-rep 44.9 57 0.002 40.7 9.9 97 606-704 634-734 (1151)
364 1ojl_A Transcriptional regulat 44.6 51 0.0017 34.1 8.1 49 295-344 16-64 (304)
365 2xeu_A Ring finger protein 4; 43.7 3.8 0.00013 31.2 -0.6 45 51-99 3-54 (64)
366 2dhr_A FTSH; AAA+ protein, hex 43.6 90 0.0031 34.8 10.4 34 304-341 64-97 (499)
367 3hws_A ATP-dependent CLP prote 43.5 26 0.0009 37.2 5.9 36 303-342 50-85 (363)
368 2csy_A Zinc finger protein 183 43.4 3.8 0.00013 33.3 -0.8 44 51-99 15-59 (81)
369 1e4u_A Transcriptional repress 42.8 8.6 0.00029 31.1 1.4 48 50-101 10-62 (78)
370 2kn9_A Rubredoxin; metalloprot 42.8 15 0.00052 29.8 2.8 15 87-101 58-72 (81)
371 1dx8_A Rubredoxin; electron tr 42.3 19 0.00064 28.4 3.2 42 63-105 7-56 (70)
372 3zyw_A Glutaredoxin-3; metal b 42.3 88 0.003 26.7 8.0 54 615-669 7-66 (111)
373 3of5_A Dethiobiotin synthetase 42.1 18 0.00062 35.8 3.9 27 307-333 8-34 (228)
374 2v3b_B Rubredoxin 2, rubredoxi 41.9 18 0.00061 27.0 2.8 36 64-100 4-47 (55)
375 2ecj_A Tripartite motif-contai 41.9 8.4 0.00029 28.6 1.1 43 51-95 15-58 (58)
376 4fcw_A Chaperone protein CLPB; 41.6 17 0.00059 37.5 3.9 35 305-340 48-82 (311)
377 3cf2_A TER ATPase, transitiona 41.0 19 0.00065 42.8 4.5 43 303-349 237-279 (806)
378 3qxc_A Dethiobiotin synthetase 40.9 23 0.00078 35.5 4.5 27 307-333 25-51 (242)
379 1u0j_A DNA replication protein 40.9 17 0.00057 37.1 3.5 25 304-328 104-128 (267)
380 1v5n_A PDI-like hypothetical p 40.7 10 0.00035 31.5 1.5 31 52-82 48-80 (89)
381 2w0m_A SSO2452; RECA, SSPF, un 40.6 37 0.0013 32.9 6.1 45 300-345 19-63 (235)
382 1lv7_A FTSH; alpha/beta domain 40.6 36 0.0012 34.0 6.1 25 304-328 45-69 (257)
383 1u6t_A SH3 domain-binding glut 40.5 37 0.0013 29.9 5.2 45 627-671 2-53 (121)
384 3g5j_A Putative ATP/GTP bindin 40.5 36 0.0012 29.9 5.4 52 608-660 73-126 (134)
385 3u4q_B ATP-dependent helicase/ 39.4 32 0.0011 43.2 6.5 50 307-357 5-56 (1166)
386 3sxu_A DNA polymerase III subu 39.3 36 0.0012 31.3 5.2 38 607-644 22-59 (150)
387 2bud_A Males-absent on the fir 39.0 16 0.00055 30.4 2.4 25 130-154 47-71 (92)
388 2ea6_A Ring finger protein 4; 38.9 2.5 8.7E-05 32.9 -2.4 45 50-98 14-65 (69)
389 3m9p_A MALE-specific lethal 3 38.9 5.3 0.00018 34.4 -0.5 24 131-154 59-82 (110)
390 3cmu_A Protein RECA, recombina 38.6 31 0.0011 45.2 6.2 53 301-356 1424-1476(2050)
391 3cwq_A Para family chromosome 38.1 31 0.001 33.5 4.9 41 308-350 5-47 (209)
392 3fgn_A Dethiobiotin synthetase 37.9 23 0.00079 35.7 4.0 27 307-333 30-56 (251)
393 4ayc_A E3 ubiquitin-protein li 37.9 6.5 0.00022 35.7 -0.1 43 51-98 53-96 (138)
394 4cpa_I Metallocarboxypeptidase 37.8 16 0.00055 23.9 1.7 27 73-99 4-31 (38)
395 3nhm_A Response regulator; pro 37.8 1.6E+02 0.0054 25.0 9.4 95 622-722 25-123 (133)
396 2y1n_A E3 ubiquitin-protein li 37.5 8.6 0.00029 41.3 0.7 49 50-101 331-379 (389)
397 1s24_A Rubredoxin 2; electron 36.9 22 0.00077 29.2 2.9 37 63-100 35-79 (87)
398 2djb_A Polycomb group ring fin 36.6 7.5 0.00026 30.6 0.0 45 51-99 15-60 (72)
399 2i1q_A DNA repair and recombin 36.5 94 0.0032 32.1 8.8 52 293-344 86-153 (322)
400 1cr0_A DNA primase/helicase; R 36.5 71 0.0024 32.6 7.7 46 297-342 28-73 (296)
401 3gx8_A Monothiol glutaredoxin- 36.2 1.3E+02 0.0046 26.0 8.3 55 615-670 7-70 (121)
402 1byi_A Dethiobiotin synthase; 36.0 30 0.001 33.6 4.5 33 308-341 6-38 (224)
403 2r62_A Cell division protease 35.7 35 0.0012 34.3 5.1 26 303-328 43-68 (268)
404 3nbx_X ATPase RAVA; AAA+ ATPas 35.6 18 0.00062 40.6 3.0 34 295-328 32-65 (500)
405 2ecw_A Tripartite motif-contai 35.6 7.4 0.00025 31.5 -0.1 48 51-99 19-69 (85)
406 3kjh_A CO dehydrogenase/acetyl 35.6 20 0.00068 35.5 3.1 29 310-339 6-34 (254)
407 2k1p_A Zinc finger RAN-binding 35.6 14 0.00047 24.4 1.2 13 86-98 3-15 (33)
408 2f5k_A MORF-related gene 15 is 35.2 7.1 0.00024 33.3 -0.3 25 130-154 51-75 (102)
409 1yk4_A Rubredoxin, RD; electro 35.1 21 0.00072 26.3 2.3 35 64-99 3-45 (52)
410 2ecv_A Tripartite motif-contai 35.0 14 0.00047 29.8 1.4 49 51-100 19-70 (85)
411 3fl2_A E3 ubiquitin-protein li 34.9 8.1 0.00028 34.2 -0.0 46 50-99 51-97 (124)
412 3ea0_A ATPase, para family; al 34.6 39 0.0013 33.3 5.1 32 308-339 9-40 (245)
413 1hqc_A RUVB; extended AAA-ATPa 34.1 55 0.0019 33.8 6.4 26 303-328 37-62 (324)
414 3lte_A Response regulator; str 34.1 52 0.0018 28.3 5.4 30 624-653 6-35 (132)
415 3pfi_A Holliday junction ATP-d 34.0 53 0.0018 34.2 6.3 24 304-327 55-78 (338)
416 3i42_A Response regulator rece 33.5 73 0.0025 27.1 6.2 95 623-723 26-124 (127)
417 3l11_A E3 ubiquitin-protein li 33.4 20 0.00068 31.1 2.3 43 51-98 15-59 (115)
418 2ct2_A Tripartite motif protei 33.0 7.3 0.00025 31.9 -0.6 48 51-99 15-66 (88)
419 2lk0_A RNA-binding protein 5; 33.0 10 0.00035 24.8 0.2 11 87-97 3-13 (32)
420 2r2a_A Uncharacterized protein 32.7 21 0.00071 34.6 2.5 22 307-328 8-29 (199)
421 2ysj_A Tripartite motif-contai 32.6 8.2 0.00028 29.3 -0.3 44 50-95 19-63 (63)
422 3h5i_A Response regulator/sens 32.6 2.4E+02 0.0081 24.2 10.1 27 625-651 6-32 (140)
423 2lcc_A AT-rich interactive dom 31.5 15 0.0005 29.6 1.0 25 130-154 38-62 (76)
424 2ckl_A Polycomb group ring fin 31.2 14 0.00048 31.7 0.9 46 50-99 14-60 (108)
425 1um8_A ATP-dependent CLP prote 31.0 42 0.0014 35.8 5.0 26 303-328 71-96 (376)
426 1jm7_A BRCA1, breast cancer ty 30.9 16 0.00053 31.4 1.2 46 51-98 21-67 (112)
427 1t1h_A Gspef-atpub14, armadill 30.8 14 0.00047 29.4 0.8 45 51-99 8-53 (78)
428 1u94_A RECA protein, recombina 30.7 59 0.002 34.6 5.9 52 293-345 50-103 (356)
429 1d2n_A N-ethylmaleimide-sensit 30.3 28 0.00097 35.2 3.3 25 304-328 64-88 (272)
430 2wem_A Glutaredoxin-related pr 30.3 1.3E+02 0.0043 26.1 7.1 53 616-669 12-71 (118)
431 2xxa_A Signal recognition part 29.6 48 0.0017 36.3 5.1 36 306-341 102-137 (433)
432 2y43_A E3 ubiquitin-protein li 29.5 13 0.00045 31.2 0.5 44 51-98 22-66 (99)
433 3k1j_A LON protease, ATP-depen 29.5 74 0.0025 36.5 7.0 57 291-347 47-116 (604)
434 3cmw_A Protein RECA, recombina 29.3 62 0.0021 41.8 6.6 54 293-347 719-774 (1706)
435 3b9p_A CG5977-PA, isoform A; A 29.3 32 0.0011 35.2 3.5 26 303-328 53-78 (297)
436 3fe2_A Probable ATP-dependent 29.3 1.7E+02 0.0057 28.5 8.9 75 623-704 101-185 (242)
437 3eqz_A Response regulator; str 29.1 1.5E+02 0.0051 25.1 7.7 22 626-647 5-26 (135)
438 1g3q_A MIND ATPase, cell divis 28.9 41 0.0014 32.9 4.1 33 308-341 7-39 (237)
439 3oa6_A MALE-specific lethal 3 28.8 9.7 0.00033 32.9 -0.5 24 131-154 59-82 (110)
440 2yan_A Glutaredoxin-3; oxidore 28.7 2.2E+02 0.0074 23.6 8.3 57 615-672 8-70 (105)
441 3gk5_A Uncharacterized rhodane 28.4 32 0.0011 29.3 2.8 38 622-659 53-90 (108)
442 3pxg_A Negative regulator of g 28.1 80 0.0028 34.9 6.7 30 302-331 199-228 (468)
443 1wp9_A ATP-dependent RNA helic 28.1 2E+02 0.0067 31.0 10.1 108 606-720 33-152 (494)
444 3vaa_A Shikimate kinase, SK; s 28.0 42 0.0014 32.0 3.9 27 302-328 23-49 (199)
445 1jm7_B BARD1, BRCA1-associated 28.0 35 0.0012 29.7 2.9 43 50-98 21-64 (117)
446 2r2a_A Uncharacterized protein 27.9 54 0.0018 31.6 4.6 38 429-466 88-132 (199)
447 1yuz_A Nigerythrin; rubrythrin 27.9 28 0.00096 33.8 2.5 28 62-100 170-197 (202)
448 1nlf_A Regulatory protein REPA 27.7 1.2E+02 0.0041 30.6 7.5 53 302-354 28-89 (279)
449 3e9g_A Chromatin modification- 27.5 9.8 0.00033 33.6 -0.8 26 130-155 74-99 (130)
450 1n0w_A DNA repair protein RAD5 27.5 61 0.0021 31.7 5.1 50 293-342 12-67 (243)
451 3a10_A Response regulator; pho 27.2 2E+02 0.0068 23.5 7.9 89 623-719 24-115 (116)
452 3trf_A Shikimate kinase, SK; a 27.2 42 0.0014 31.3 3.7 25 304-328 5-29 (185)
453 2fiy_A Protein FDHE homolog; F 27.2 25 0.00084 36.6 2.1 38 49-98 180-231 (309)
454 2eko_A Histone acetyltransfera 27.0 17 0.0006 29.9 0.7 24 131-154 44-67 (87)
455 1hyq_A MIND, cell division inh 26.7 52 0.0018 32.8 4.5 32 308-340 7-38 (263)
456 2wci_A Glutaredoxin-4; redox-a 26.4 2.2E+02 0.0076 25.2 8.2 57 614-671 25-87 (135)
457 1cp2_A CP2, nitrogenase iron p 25.8 41 0.0014 33.8 3.5 29 310-339 7-35 (269)
458 3grc_A Sensor protein, kinase; 25.4 3.1E+02 0.01 23.3 9.1 18 703-720 109-126 (140)
459 4ag6_A VIRB4 ATPase, type IV s 25.2 98 0.0033 33.1 6.6 46 303-349 34-79 (392)
460 3dmn_A Putative DNA helicase; 25.0 2.8E+02 0.0097 25.5 9.1 76 613-706 50-125 (174)
461 2oze_A ORF delta'; para, walke 25.0 59 0.002 33.2 4.6 37 311-348 44-82 (298)
462 1gku_B Reverse gyrase, TOP-RG; 24.8 1.6E+02 0.0055 36.2 9.2 94 606-703 81-183 (1054)
463 3q9l_A Septum site-determining 24.7 54 0.0018 32.5 4.1 32 308-340 7-38 (260)
464 2ph1_A Nucleotide-binding prot 24.6 54 0.0018 32.9 4.1 32 308-340 23-54 (262)
465 2oap_1 GSPE-2, type II secreti 24.5 50 0.0017 37.1 4.1 39 285-326 244-282 (511)
466 2hf1_A Tetraacyldisaccharide-1 24.5 28 0.00096 27.2 1.5 6 53-58 10-15 (68)
467 2rdm_A Response regulator rece 24.4 2.4E+02 0.0084 23.6 8.2 22 702-723 104-125 (132)
468 2js4_A UPF0434 protein BB2007; 24.2 29 0.00098 27.3 1.5 21 53-73 10-36 (70)
469 2pk7_A Uncharacterized protein 24.2 29 0.00099 27.2 1.5 11 63-73 26-36 (69)
470 3iij_A Coilin-interacting nucl 24.0 58 0.002 30.2 4.0 26 303-328 10-35 (180)
471 2jr6_A UPF0434 protein NMA0874 24.0 29 0.001 27.1 1.5 21 53-73 10-36 (68)
472 3tqf_A HPR(Ser) kinase; transf 24.0 43 0.0015 31.6 2.9 24 303-326 15-38 (181)
473 1ixz_A ATP-dependent metallopr 24.0 1.1E+02 0.0037 30.3 6.2 25 304-328 49-73 (254)
474 1p9r_A General secretion pathw 23.9 1.4E+02 0.0046 32.5 7.4 43 284-328 149-191 (418)
475 2ga8_A Hypothetical 39.9 kDa p 23.9 87 0.003 33.2 5.6 35 294-328 12-48 (359)
476 2wul_A Glutaredoxin related pr 23.9 2.7E+02 0.0092 24.1 7.9 64 624-688 19-89 (118)
477 3k9g_A PF-32 protein; ssgcid, 23.8 54 0.0018 32.9 3.9 29 309-339 33-61 (267)
478 1g25_A CDK-activating kinase a 23.6 21 0.00071 27.2 0.5 46 51-99 3-53 (65)
479 2kjq_A DNAA-related protein; s 23.5 51 0.0017 30.0 3.3 28 303-330 35-62 (149)
480 2qmh_A HPR kinase/phosphorylas 23.4 42 0.0014 32.5 2.7 25 303-327 33-57 (205)
481 4ap4_A E3 ubiquitin ligase RNF 22.9 7 0.00024 34.8 -2.8 47 49-99 70-123 (133)
482 3foj_A Uncharacterized protein 22.9 62 0.0021 26.9 3.5 37 623-659 55-91 (100)
483 1z6u_A NP95-like ring finger p 22.7 18 0.00061 33.3 -0.0 45 51-99 78-123 (150)
484 3ly5_A ATP-dependent RNA helic 22.7 5.5E+02 0.019 25.1 11.6 91 606-703 101-209 (262)
485 2jtq_A Phage shock protein E; 22.6 1.2E+02 0.0042 23.9 5.3 37 622-659 39-76 (85)
486 1g41_A Heat shock protein HSLU 22.4 73 0.0025 34.9 4.8 25 304-328 50-74 (444)
487 2afh_E Nitrogenase iron protei 22.3 49 0.0017 33.7 3.3 29 310-339 8-36 (289)
488 2jny_A Uncharacterized BCR; st 22.2 34 0.0011 26.7 1.5 23 52-74 11-39 (67)
489 3ez2_A Plasmid partition prote 21.9 46 0.0016 35.9 3.1 31 309-339 114-149 (398)
490 4b3f_X DNA-binding protein smu 21.8 1.1E+02 0.0039 35.2 6.6 50 606-655 215-264 (646)
491 2zet_C Melanophilin; complex, 21.8 36 0.0012 31.3 1.8 45 50-97 67-116 (153)
492 3fwy_A Light-independent proto 21.7 51 0.0017 34.3 3.3 30 309-339 53-82 (314)
493 3igf_A ALL4481 protein; two-do 21.6 60 0.002 34.8 3.9 41 308-348 6-46 (374)
494 1t6n_A Probable ATP-dependent 21.6 3.9E+02 0.013 25.1 9.8 93 606-704 61-167 (220)
495 2yvu_A Probable adenylyl-sulfa 21.5 84 0.0029 29.3 4.6 28 304-331 13-40 (186)
496 1ny5_A Transcriptional regulat 21.5 1.4E+02 0.0049 31.8 7.0 45 299-344 155-199 (387)
497 3end_A Light-independent proto 21.5 51 0.0018 33.9 3.3 30 309-339 46-75 (307)
498 3ug7_A Arsenical pump-driving 21.4 1.1E+02 0.0037 32.2 5.9 33 307-340 29-61 (349)
499 1zuh_A Shikimate kinase; alpha 21.4 63 0.0022 29.5 3.6 25 304-328 7-31 (168)
500 1aky_A Adenylate kinase; ATP:A 21.4 65 0.0022 31.1 3.9 25 304-328 4-28 (220)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-109 Score=1011.52 Aligned_cols=704 Identities=41% Similarity=0.703 Sum_probs=561.8
Q ss_pred cccccccccccccCccCCCCc---ccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhcc
Q 002937 100 NDIDKILDCEMRPTVAGDSDV---SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSS 176 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~---~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (864)
..||+||++|.++........ .+.........||||||+|+||+||||+|+++|.+ .++.+ ++.+|.++...
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~----~~~~~-~~~~~~k~~~~ 112 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGLK-RLDNYCKQFII 112 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCS----CBTTH-HHHHHHHHHTH
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhh----cchHH-HHHHHHHHhhh
Confidence 468999999886433222111 11111123458999999999999999999999863 34443 67777765321
Q ss_pred --------CCCCchh----------hhhcCCccchhhhHhhhhc-----CCccceeeeeeccccccccccccCCCCCc-c
Q 002937 177 --------NNNAEED----------FVAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDISA-F 232 (864)
Q Consensus 177 --------~~~~~~~----------~~~~~~~~~~verIi~~~~-----~~~~~~ylVKW~~l~y~~~tWe~~~~~~~-~ 232 (864)
+....++ .....++|++|||||+++. ..++.+|||||++|||++||||....+.. .
T Consensus 113 ~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~ 192 (800)
T 3mwy_W 113 EDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLA 192 (800)
T ss_dssp HHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTC
T ss_pred HHHHHhcCCCCCHHHHHHHhhhhhhhccccccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhh
Confidence 1111121 1223478999999999986 55678999999999999999998776543 4
Q ss_pred HHHHHHHHHHhhhccccccCccCCCCcccccccCCCccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcC
Q 002937 233 QPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADE 312 (864)
Q Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade 312 (864)
++.++.|..+....... . ...........|.++..+|.+..+++|||||++||+||.+.+.++.+|||||+
T Consensus 193 ~~~i~~~~~r~~~~~~~--~-------~~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILade 263 (800)
T 3mwy_W 193 PEQVKHFQNRENSKILP--Q-------YSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADE 263 (800)
T ss_dssp HHHHHHHHHTTTCTTCS--T-------TCCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCC
T ss_pred HHHHHHHHHhhhcccCC--c-------chhcccccCCcccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeC
Confidence 66788887643221110 0 00011122345778888999998999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhc--CCCCceEEEeccccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhc
Q 002937 313 MGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKK 390 (864)
Q Consensus 313 ~GlGKTi~ai~~i~~l~~--~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~ 390 (864)
||+|||+|+++++.+++. ...+|+|||||.+++.||.+||.+|+|++++++|+|....+..++.++++......
T Consensus 264 mGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~---- 339 (800)
T 3mwy_W 264 MGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAK---- 339 (800)
T ss_dssp TTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-------
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhcccccc----
Confidence 999999999999988753 34569999999999999999999999999999999999999999988876533211
Q ss_pred ccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCC
Q 002937 391 KKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (864)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 470 (864)
.....+++|+||||+++.++...+..++|++|||||||++||..++.++++..+.+.+||+|||||++|+
T Consensus 340 ----------~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~ 409 (800)
T 3mwy_W 340 ----------GKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN 409 (800)
T ss_dssp ------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSC
T ss_pred ----------ccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCC
Confidence 1223578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHH
Q 002937 471 LDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (864)
Q Consensus 471 ~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~ 550 (864)
+.|||++++||.|+.|.....|............+..|+.++.|+++||++.++...+|++.+.++.|+|++.|+.+|+.
T Consensus 410 l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~ 489 (800)
T 3mwy_W 410 IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKN 489 (800)
T ss_dssp SHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHH
Confidence 99999999999999998877776554444556778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCcchHHHHHHHHHHHhCcccccCCCCC--------CccCchHHHHHhhhcccHHHHHHHHHHHHH
Q 002937 551 ILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVKLK 621 (864)
Q Consensus 551 i~~~~~~~l~~~-~~~~~~~~~~~~~lrk~~~hp~l~~~~~~--------~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~ 621 (864)
++.++...+... .+...+++++++.||++|+||+++...+. ...........++..|+|+.+|.++|..+.
T Consensus 490 i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~ 569 (800)
T 3mwy_W 490 ILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK 569 (800)
T ss_dssp HHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh
Confidence 988766555432 33456789999999999999999865322 122344556778889999999999999999
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
+.|+|+|||||++.++++|+++|...|+++.+++|+++..+|++++++|+++++..++||+||++||+||||++|++||+
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 99999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred eCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhh--------hcCCCHHHHHHH
Q 002937 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--------AQNINQEELDDI 773 (864)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~--------~~~~~~~~l~~l 773 (864)
||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+|+.+.+++++.+. ...++.+++.+|
T Consensus 650 ~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~l 729 (800)
T 3mwy_W 650 FDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAI 729 (800)
T ss_dssp SSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHH
T ss_pred ecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996542 246789999999
Q ss_pred HhhchhhhcccccccCCCcccCCCCHHHHHHHhcCCCCCCccccCCc--cchhhhhcccccchhhh
Q 002937 774 IRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--EDEDGFLKAFKVLSSII 837 (864)
Q Consensus 774 l~~g~~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 837 (864)
|++|+..+|.+.+.+ ..+.+++||.||+|+....+..++.. ..+++|+++|+|+++..
T Consensus 730 l~~g~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (800)
T 3mwy_W 730 LKFGAGNMFTATDNQ------KKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKA 789 (800)
T ss_dssp HSSCSSSSCCSHHHH------HHHHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC------
T ss_pred HHcchHhhhhccCcc------ccccccCHHHHHHhhhhccccccccccccchHHHHhhceeeeccc
Confidence 999999999876531 12456789999999987776654432 34688999999999864
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-74 Score=689.67 Aligned_cols=476 Identities=33% Similarity=0.556 Sum_probs=399.7
Q ss_pred CCCchHHHHHHHHHHHhh-----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCC------CCceEEEeccccHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~-----~~~~~~ILade~GlGKTi~ai~~i~~l~~~~------~~~~LIV~P~sll~qW~~E~ 352 (864)
..|||||++||+||...+ ..+.||||||+||+|||+|+|+++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 589999999999998765 4677899999999999999999999887543 24699999999999999999
Q ss_pred HHHcCC-CeEEEEecChH-HHH-HHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcce
Q 002937 353 ATWAPQ-MNVVMYVGTSQ-ARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (864)
Q Consensus 353 ~~~~p~-~~~~~~~g~~~-~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w 429 (864)
.+|+|. +.++.++|... .+. .+..+ .. .......++|+|+||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~------------------~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--IS------------------QQGMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--HC------------------CCSSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHH--HH------------------hcCCCCCCcEEEeeHHHHHhhHHHhhcCCc
Confidence 999975 66666665433 221 11111 00 001123578999999999999888988999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccc---------
Q 002937 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (864)
Q Consensus 430 ~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~--------- 500 (864)
++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++|+.|+.+++...|.+.|....
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred cEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred ------hHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-cCCCcchHHHHH
Q 002937 501 ------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVV 573 (864)
Q Consensus 501 ------~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~~~~~~~~~ 573 (864)
....+..|+.++.++++||++.++...||++.+.++.|+||+.|+++|+.++......... .+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 2345778999999999999999999999999999999999999999999988764322111 122334677889
Q ss_pred HHHHHHhCcccccCCC----CCCccCchH-------HHHHhhhcccHHHHHHHHHHHHHH-cCceEEEEeccHHHHHHHH
Q 002937 574 MELRKLCCHPYMLEGV----EPDIEDTNE-------SFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 641 (864)
Q Consensus 574 ~~lrk~~~hp~l~~~~----~~~~~~~~~-------~~~~l~~~s~Kl~~l~~ll~~l~~-~g~kvlIFsq~~~~ld~L~ 641 (864)
+.||++|+||+++... .+....... ........|+|+.+|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHH
Confidence 9999999999986310 000000000 000112468999999999998875 5899999999999999999
Q ss_pred HHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 642 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
.+|...|+++.+++|+++..+|++++++|++++...++||+||++||+||||++|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 99999999999999999999999999999998877778999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhh--hcCCCHHHHHHHHhhchh
Q 002937 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNINQEELDDIIRYGSK 779 (864)
Q Consensus 722 GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~l~~ll~~g~~ 779 (864)
||+++|.||+|++++|+||+|++++..|..+.+.+++... ...++.+++.+|+.++..
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEK 573 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSS
T ss_pred CCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999997643 357899999999877654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.3e-69 Score=627.10 Aligned_cols=456 Identities=31% Similarity=0.585 Sum_probs=393.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHHHHHc
Q 002937 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 278 p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
|..+. ..|+|||.+|++|+...+..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||.+||++|+
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHC
Confidence 44443 6899999999999988888899999999999999999999999887654 459999999999999999999999
Q ss_pred CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecc
Q 002937 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (864)
Q Consensus 357 p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDE 436 (864)
|+.++.+++|.... .....++|+|+||+++..+.. +....|++||+||
T Consensus 110 ~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDE 157 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDE 157 (500)
T ss_dssp TTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEET
T ss_pred CCceEEEEecCchh-------------------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeC
Confidence 99999998876521 012467899999999987655 6677999999999
Q ss_pred cccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhcc---chHHHHHHHHHHHh
Q 002937 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~---~~~~~~~~L~~~l~ 513 (864)
||+++|..++.++++..+.+.++|+|||||++|++.|+|++++|++|+.+++...|.+.|... ........|+.++.
T Consensus 158 aH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 158 AQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp GGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred ccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998877542 23456778999999
Q ss_pred HHHHHHHHhh--HhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhCcccccCCC
Q 002937 514 PHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGV 589 (864)
Q Consensus 514 ~~~lrr~k~d--v~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~--~~~~~~~~~~~lrk~~~hp~l~~~~ 589 (864)
++++||++.+ +...+|++.+..+.++|++.|+..|+.+.......+....+ ....+...++.||++|+||.+....
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred hHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 9999999876 66789999999999999999999999887765433322111 1234677889999999999987643
Q ss_pred CCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-CCcEEEEeccCCHHHHHHHHH
Q 002937 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRID 668 (864)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~~R~~~i~ 668 (864)
.. ....++|+..+.+++..+...|+|+||||++..+++.|.+.|... |+++.+++|+++..+|+++++
T Consensus 318 ~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 318 EQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp CC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred cc-----------hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHH
Confidence 21 235789999999999999999999999999999999999999885 999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 002937 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 669 ~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
+|++++... ++|+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++++|+||+|++++.+
T Consensus 387 ~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 387 KFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HhcCCCCCC-EEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 999875443 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhh--hcCCCHHHHHHHHhhch
Q 002937 749 KMVLEHLVVGRLK--AQNINQEELDDIIRYGS 778 (864)
Q Consensus 749 K~~l~~~v~~~~~--~~~~~~~~l~~ll~~g~ 778 (864)
|..+.+.+++... ...++.+|+.+++.+..
T Consensus 466 K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 497 (500)
T 1z63_A 466 KRSLFKDIISSGDSWITELSTEELRKVIELSV 497 (500)
T ss_dssp CSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCcchhccCCHHHHHHHhccCC
Confidence 9999999997643 45788888888876543
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.2e-49 Score=487.48 Aligned_cols=420 Identities=20% Similarity=0.262 Sum_probs=322.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEeccccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P~sll~qW~~E~~~~~p~~~~~ 362 (864)
.+|+|||++++.|+... .+.++||||+||+|||++|++++..+...+ .+++|||||.+++.||..||.+|+ +.++.
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEE
Confidence 57999999999998653 367899999999999999999998887654 459999999999999999999988 78888
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEEEeccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~vIvDEaH~ 439 (864)
+++|......... .......++|+|+||+++.++.. .+....|++|||||||+
T Consensus 229 v~~~~~~~~~~~~------------------------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHD------------------------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHT------------------------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EEccchhhhhhhh------------------------cccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 8877654331110 01122467899999999977643 35566899999999999
Q ss_pred ccCcccH---HHHHHHhc--ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHH-----------
Q 002937 440 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE----------- 503 (864)
Q Consensus 440 lkn~~s~---~~~~l~~l--~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~----------- 503 (864)
++|..+. .++.+..+ ...++|+|||||++|++.|+|++++|+.|+.+.+...|...+.......
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 9987654 47777777 5778999999999999999999999999999999999987754321100
Q ss_pred -----------------------------------HHHHHHHHHh-----HHHHHHHHhhHhhcCCCcEEEEEEecCCHH
Q 002937 504 -----------------------------------QISRLHRMLA-----PHLLRRVKKDVMKELPPKKELILRVELSSK 543 (864)
Q Consensus 504 -----------------------------------~~~~L~~~l~-----~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~ 543 (864)
....+..++. ..++|+++..+ ..+|++....+.+++++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHH
Confidence 0001111111 11222333333 368888899999999998
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc-cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHH
Q 002937 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (864)
Q Consensus 544 q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l-~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~ 622 (864)
....|..... ......... .... +.+|.. ........ ......++|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~-----~~~~~~~~~-------~~~~-~l~pe~~~~~l~~~~-------~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGI-----MGARKSAED-------RARD-MLYPERIYQEFEGDN-------ATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHH-----TTCCSSGGG-------GTHH-HHCSGGGTTTTTSSS-------CCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHhh-----hhhhhhhHH-------HHhh-hcChHHHHHHhhhhh-------hcccCccHHHHHHHHHHHh--C
Confidence 8888764211 111000000 0111 112222 11111110 1234568899999999987 5
Q ss_pred cCceEEEEeccHHHHHHHHHHHhh-CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
.+.|+||||++..+++.|.+.|.. .|+++..++|+++..+|+++++.|+++.+. +.+|++|+++++|||++.|++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~-~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTG-AQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSS-CEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCc-ccEEEecchhhcCCCcccCcEEEE
Confidence 688999999999999999999984 599999999999999999999999986532 457999999999999999999999
Q ss_pred eCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHH
Q 002937 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (864)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~ 754 (864)
||++|||..+.|++||++|+||++.|.||++++.+|+|++|++...+|..+..
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred ecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999887643
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-44 Score=415.10 Aligned_cols=421 Identities=14% Similarity=0.180 Sum_probs=290.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc--CCCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~--p~~~ 360 (864)
.+|+|||.+++.|+. .+ ++||+++||+|||++++.++..+.....+++|||||. +++.||.+++.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 479999999999884 33 9999999999999999999887765445699999997 88899999999998 5568
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDEaH 438 (864)
+..++|.......... ...++|+|+||+.+..... .+....|++||+||||
T Consensus 83 v~~~~g~~~~~~~~~~---------------------------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred eEEeeCCcchhhhhhh---------------------------ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 9999987655432111 1246899999999976533 4556689999999999
Q ss_pred cccCcccHH--HHHHHh-cccccEEEeecCCCCCCHhHHHhhhhhcCCCCC---CChHHHHHHHh--------ccchHHH
Q 002937 439 RLKNKDSKL--FSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKF---GSLEEFQEEFK--------DINQEEQ 504 (864)
Q Consensus 439 ~lkn~~s~~--~~~l~~-l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~---~~~~~f~~~~~--------~~~~~~~ 504 (864)
++++..+.. ...+.. ....++|+|||||. ++..+++.++.++..... .....+...|. .......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred ccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHH
Confidence 998753322 222222 24678999999999 777888887777764432 11111111111 1122345
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC---------------------
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG--------------------- 563 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~--------------------- 563 (864)
...+...+.+.+.++.+......+..... ..++........ ......+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAG---QIINEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHH---HHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHH---HHHHHHhhccccchhhHHHHHHHHHHHHHHHH
Confidence 66788888889998888765544432211 122222211111 00011111100
Q ss_pred ----CCcchHHHHHHHHHHHhCcccccCCCCCCccCchHHHHH----------hhhcccHHHHHHHHHHHHH--HcCceE
Q 002937 564 ----GAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQ----------LLESSGKLQLLDKMMVKLK--EQGHRV 627 (864)
Q Consensus 564 ----~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~----------l~~~s~Kl~~l~~ll~~l~--~~g~kv 627 (864)
.....+...+..+...+.|+..... ... .....+.. ....++|+..|.++|.... ..++|+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 364 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKAS--KEI-FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 364 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHH--HHH-HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHhhcHHHHHHHHHHHHHhhccccchhh--hhh-hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeE
Confidence 1111223333333333333110000 000 00001111 1157889999999999876 468999
Q ss_pred EEEeccHHHHHHHHHHHhhCCCcEEEEec--------cCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE
Q 002937 628 LIYSQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (864)
Q Consensus 628 lIFsq~~~~ld~L~~~L~~~g~~~~~i~G--------~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V 699 (864)
|||+++..+++.|.++|...|+++..++| +++..+|++++++|+++... +|++|+++|+|||+++|++|
T Consensus 365 lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~V 441 (494)
T 1wp9_A 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLV 441 (494)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEE
T ss_pred EEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEE
Confidence 99999999999999999999999999999 89999999999999986533 79999999999999999999
Q ss_pred EEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHH
Q 002937 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (864)
Q Consensus 700 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~ 753 (864)
|+||++|||..+.|++||++|.|| +.+|+|++++|+||.++.++.+|..+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998 899999999999999999998887654
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=5.2e-43 Score=370.67 Aligned_cols=252 Identities=27% Similarity=0.442 Sum_probs=196.8
Q ss_pred HHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~--~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
-+||+|++|..+||++.+.+++|+||+.|+++|+.++.+....+....+ ....+++.++.||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 4799999999999999999999999999999999999887665543222 12357788999999999999986321
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC-CCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
.+...++|+..|.++|..+.+.|+|+||||+++.+++.|.++|... |+++.+++|+++..+|++++++|++
T Consensus 90 --------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 90 --------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp --------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC
Confidence 1345799999999999999989999999999999999999999885 9999999999999999999999998
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhH
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l 752 (864)
++... +||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++++|+||+|++++.+|..+
T Consensus 162 ~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 162 NPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred CCCCC-EEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 75444 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh--hcCCCHHHHHHHHhhchh
Q 002937 753 EHLVVGRLK--AQNINQEELDDIIRYGSK 779 (864)
Q Consensus 753 ~~~v~~~~~--~~~~~~~~l~~ll~~g~~ 779 (864)
.+.+++... ...++.+++.+|+.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 241 FKDIISSGDSWITELSTEELRKVIELSVG 269 (271)
T ss_dssp HTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHccCchhhhcCCHHHHHHHhccCCC
Confidence 999997653 357899999999877653
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.2e-41 Score=387.57 Aligned_cols=371 Identities=17% Similarity=0.246 Sum_probs=261.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCe-
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN- 360 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~- 360 (864)
+.+|+|||.++++++ ..++++||+++||+|||++++.++..+ .+++|||||. +++.||.++|.+| +.+
T Consensus 91 ~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~ 160 (472)
T 2fwr_A 91 EISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEEY 160 (472)
T ss_dssp CCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGGG
T ss_pred CCCcCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhC--CCcc
Confidence 468999999999876 455679999999999999998888776 3589999998 8889999999995 456
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l 440 (864)
+.+++|... ...+|+|+||+.+......+. -.|++||+||||++
T Consensus 161 v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~ 204 (472)
T 2fwr_A 161 VGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHL 204 (472)
T ss_dssp EEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGT
T ss_pred eEEECCCcC-----------------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCC
Confidence 777666431 135799999999977655442 35899999999999
Q ss_pred cCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHHH
Q 002937 441 KNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRV 520 (864)
Q Consensus 441 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~ 520 (864)
.+.... ..+..+...++|+|||||.+++..+. . +...+.+.+.++.
T Consensus 205 ~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~-~-------------------------------l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 205 PAESYV--QIAQMSIAPFRLGLTATFEREDGRHE-I-------------------------------LKEVVGGKVFELF 250 (472)
T ss_dssp TSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-S-------------------------------HHHHTCCEEEECC
T ss_pred CChHHH--HHHHhcCCCeEEEEecCccCCCCHHH-H-------------------------------HHHHhCCeEeecC
Confidence 987644 35566678899999999986653220 0 1111122222222
Q ss_pred HhhHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC-CCCCC----cc
Q 002937 521 KKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE-GVEPD----IE 594 (864)
Q Consensus 521 k~dv~-~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~-~~~~~----~~ 594 (864)
..++. ..+++.....+.+++++.++..|..+.......+........... .+ ..++.. ...+. ..
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE----DF-----NKIVMASGYDERAYEALR 321 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS----SS-----TTTTTTTCCSSSSSTTTH
T ss_pred HHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh----hH-----HHHHHHhccCHHHHHHHH
Confidence 22222 247777788899999999999888765543322211110000000 00 000000 00000 00
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
............+.|+..|.+++.. ..++++|||+++..+++.|.+.|. +..++|.++..+|++++++|+++.
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 0111122335578899999999987 568999999999999999999985 456889999999999999998854
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCC-CcEEEEEEEeCCCHHHHHHHHHHHhhhH
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVL 752 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~~TiEe~i~~~~~~K~~l 752 (864)
.. +|++|+++++|+|++.+++||++|++|||..+.|++||++|.||. +.|.||.|++++|+||++.++.++|..+
T Consensus 395 ~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 395 FR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred CC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 43 689999999999999999999999999999999999999999998 8999999999999999999888877654
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.9e-36 Score=355.25 Aligned_cols=439 Identities=14% Similarity=0.163 Sum_probs=222.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecc-ccHHHHHHHHHHHcC-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~-sll~qW~~E~~~~~p- 357 (864)
.+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||||. ++..||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57999999999888 3578899999999999999877776655432 4589999997 788999999999986
Q ss_pred -CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--c-CCcceeEEE
Q 002937 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (864)
Q Consensus 358 -~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l-~~~~w~~vI 433 (864)
++++..++|........... ...++|+|+|++.+...... + ....|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHHH--------------------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred cCceEEEEeCCCCcchhHHHh--------------------------hCCCCEEEECHHHHHHHHHhCcccccccCCEEE
Confidence 78888888876433211110 12478999999999764322 3 344689999
Q ss_pred ecccccccCcccHHHHHHHhc--------ccccEEEeecCCCCCCHhH-------HHhhhhhcCCCCCC----ChHHHHH
Q 002937 434 VDEGHRLKNKDSKLFSSLKQY--------STRHRVLLTGTPLQNNLDE-------LFMLMHFLDAGKFG----SLEEFQE 494 (864)
Q Consensus 434 vDEaH~lkn~~s~~~~~l~~l--------~~~~rllLTgTP~~n~~~e-------l~~ll~~l~p~~~~----~~~~f~~ 494 (864)
+||||++.+...........+ ...++++|||||.+++..+ +..+...++...+. ....+..
T Consensus 136 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 215 (556)
T 4a2p_A 136 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 215 (556)
T ss_dssp EETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred EECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHh
Confidence 999999987664222111111 2256899999998876433 33334444432211 2222222
Q ss_pred HHhccc----------h---HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Q 002937 495 EFKDIN----------Q---EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR 561 (864)
Q Consensus 495 ~~~~~~----------~---~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~ 561 (864)
...... . ......+...+..+ ..++.. +...... -.-.+.. ..|...+.........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~-~~~~~g~---~~~~~~~~~~~~~~~~ 285 (556)
T 4a2p_A 216 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEAL-----MRTIYS-VDTLSQN-SKKDFGT---QNYEHWIVVTQRKCRL 285 (556)
T ss_dssp HTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHH-----HHHHCC-----------CCCSS---HHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHH-----HHHHhh-hhhhhcc-cccccch---hhHHHHHHHHHHHHHh
Confidence 221100 0 01111111111111 111110 0000000 0001111 1111111110000000
Q ss_pred cC-CCc-------chHHHHHHHHHHHhCcccccCCC------------------CCCccCchHHHH--------------
Q 002937 562 RG-GAQ-------ISLINVVMELRKLCCHPYMLEGV------------------EPDIEDTNESFK-------------- 601 (864)
Q Consensus 562 ~~-~~~-------~~~~~~~~~lrk~~~hp~l~~~~------------------~~~~~~~~~~~~-------------- 601 (864)
.. ... ..+......+++. ++....... ..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (556)
T 4a2p_A 286 LQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALS 364 (556)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhc
Confidence 00 000 0000000111110 000000000 000000000000
Q ss_pred -HhhhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhC------------CCcEEEEeccCCHHHHHHH
Q 002937 602 -QLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 602 -~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~------------g~~~~~i~G~~~~~~R~~~ 666 (864)
.....++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|+++
T Consensus 365 ~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~ 444 (556)
T 4a2p_A 365 KDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 444 (556)
T ss_dssp HCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------
T ss_pred cCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHH
Confidence 00124889999999998776 56789999999999999999999765 5566667778999999999
Q ss_pred HHHhcC-CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHH
Q 002937 667 IDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (864)
Q Consensus 667 i~~Fn~-~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~ 745 (864)
+++|++ +... +|++|+++|+|||++++++||+||++|||..+.||+|| +| .+++.+|.|++.++++++ +..
T Consensus 445 ~~~F~~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~ 516 (556)
T 4a2p_A 445 LDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKC 516 (556)
T ss_dssp ---------CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHH
T ss_pred HHHhcccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHh
Confidence 999987 4333 79999999999999999999999999999999999999 44 578889999999999998 556
Q ss_pred HHHhhhHHHHHhhhhhhcCCCHHHHHHH
Q 002937 746 TKKKMVLEHLVVGRLKAQNINQEELDDI 773 (864)
Q Consensus 746 ~~~K~~l~~~v~~~~~~~~~~~~~l~~l 773 (864)
...|..+...++..+ +.++.+++...
T Consensus 517 ~~~k~~~~~~~i~~i--~~~~~~~~~~~ 542 (556)
T 4a2p_A 517 NRYKEEMMNKAVEKI--QKWDEETFAKK 542 (556)
T ss_dssp HHHHHHHHHHHHHHH--HTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--hcCChHHHHHH
Confidence 666666666666554 34566665443
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-36 Score=376.30 Aligned_cols=415 Identities=14% Similarity=0.186 Sum_probs=226.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecc-ccHHHHHHHHHHHcC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~-sll~qW~~E~~~~~p 357 (864)
..+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||+|. +++.||.++|.++++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 468999999999988 4578999999999999999888777665443 4589999995 588999999999986
Q ss_pred --CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--c-CCcceeEE
Q 002937 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCM 432 (864)
Q Consensus 358 --~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l-~~~~w~~v 432 (864)
++.+..++|+...+..... ....++|+|+|++.+...... + ....|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred ccCceEEEEECCcchhhHHHH--------------------------hccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 7889999988744321110 012478999999999764322 2 23468999
Q ss_pred EecccccccCcccHHHHHHHhc---------ccccEEEeecCCCCCCHhHHHhhhh-------hcCCCCCC----ChHHH
Q 002937 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFMLMH-------FLDAGKFG----SLEEF 492 (864)
Q Consensus 433 IvDEaH~lkn~~s~~~~~l~~l---------~~~~rllLTgTP~~n~~~el~~ll~-------~l~p~~~~----~~~~f 492 (864)
|+||||++.+..+ ....+..+ ....+++|||||.+++..++...++ .++...+. ....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHH
Confidence 9999999998764 22222222 1256899999998877554443322 22221111 11111
Q ss_pred HHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEec--CCHHHHHHHHHHHHHHHHHHHh---------
Q 002937 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTR--------- 561 (864)
Q Consensus 493 ~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~--ls~~q~~~Y~~i~~~~~~~l~~--------- 561 (864)
... ++......+.+. +.+.....+..++......+..
T Consensus 455 ~~~--------------------------------~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~ 502 (936)
T 4a2w_A 455 QRF--------------------------------MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQ 502 (936)
T ss_dssp HHH--------------------------------SCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHh--------------------------------ccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 111 111111111111 2222222222222221111100
Q ss_pred ------------------------cC-CCc-------chHHHHHHHHHHHhCccccc-CCCC-----------------C
Q 002937 562 ------------------------RG-GAQ-------ISLINVVMELRKLCCHPYML-EGVE-----------------P 591 (864)
Q Consensus 562 ------------------------~~-~~~-------~~~~~~~~~lrk~~~hp~l~-~~~~-----------------~ 591 (864)
.. ... ..+......+++. ++.... +... .
T Consensus 503 ~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~ 581 (936)
T 4a2w_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNG 581 (936)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhc
Confidence 00 000 0000001111111 000000 0000 0
Q ss_pred CccCchHHH--------HHh-------hhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhC-------
Q 002937 592 DIEDTNESF--------KQL-------LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------- 647 (864)
Q Consensus 592 ~~~~~~~~~--------~~l-------~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~------- 647 (864)
........+ ..+ ...++|+..|.++|.... ..++|+||||+++.+++.|.++|...
T Consensus 582 ~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik 661 (936)
T 4a2w_A 582 PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK 661 (936)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccc
Confidence 000000000 000 015889999999998764 45799999999999999999999876
Q ss_pred -----CCcEEEEeccCCHHHHHHHHHHhcC-CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 648 -----KWQYERIDGKVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 648 -----g~~~~~i~G~~~~~~R~~~i~~Fn~-~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
|..+..++|+++..+|++++++|++ +... +|++|+++|+|||++.|++||+||++|||..++||+||
T Consensus 662 ~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR---- 734 (936)
T 4a2w_A 662 PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR---- 734 (936)
T ss_dssp CEEC----------------------------CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred eeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----
Confidence 5666677888999999999999987 4333 79999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhHHHHHhhhhhhcCCCHHHHH
Q 002937 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELD 771 (864)
Q Consensus 722 GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~l~ 771 (864)
|+.+++.+|.|++.+|++++.+ ....|..+...++..+ +.++.+++.
T Consensus 735 GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~l--~~~~~~~~~ 781 (936)
T 4a2w_A 735 GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEKI--QKWDEETFA 781 (936)
T ss_dssp ----CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHHH--HTSCHHHHH
T ss_pred CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHHh--hcCCHHHHH
Confidence 4557788999999999999866 5555555555555544 233444443
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.7e-36 Score=350.94 Aligned_cols=443 Identities=15% Similarity=0.175 Sum_probs=240.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecc-ccHHHHHHHHHHHcC-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~-sll~qW~~E~~~~~p- 357 (864)
.+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||||. ++..||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 47999999999988 4678999999999999999877776655432 4589999997 888999999999986
Q ss_pred -CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--c-CCcceeEEE
Q 002937 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (864)
Q Consensus 358 -~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l-~~~~w~~vI 433 (864)
++++..++|.......... .....+|+|+|++.+...... + ....|++||
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 132 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQH--------------------------IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMI 132 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHH--------------------------HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEE
T ss_pred CCcEEEEEcCCCcchhhHHH--------------------------HhcCCCEEEECHHHHHHHHhcCcccccccCCEEE
Confidence 6888888887643321111 012478999999999764332 3 334689999
Q ss_pred ecccccccCcccHHHHHHHhc---------ccccEEEeecCCCCCCHhH-------HHhhhhhcCCCCCC----ChHHHH
Q 002937 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDE-------LFMLMHFLDAGKFG----SLEEFQ 493 (864)
Q Consensus 434 vDEaH~lkn~~s~~~~~l~~l---------~~~~rllLTgTP~~n~~~e-------l~~ll~~l~p~~~~----~~~~f~ 493 (864)
+||||++.+..+........+ ....+++|||||.+++..+ +..+...++...+. ....+.
T Consensus 133 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 212 (555)
T 3tbk_A 133 FDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE 212 (555)
T ss_dssp ETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH
T ss_pred EECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH
Confidence 999999988764222221222 1246899999999887433 33444444432211 111211
Q ss_pred HHHhcc----------chHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHH--------------------
Q 002937 494 EEFKDI----------NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSK-------------------- 543 (864)
Q Consensus 494 ~~~~~~----------~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~-------------------- 543 (864)
..+... ........+...+.. ++....++...++..... ....+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 289 (555)
T 3tbk_A 213 QVVYKPQKISRKVASRTSNTFKCIISQLMKE--TEKLAKDVSEELGKLFQI-QNREFGTQKYEQWIVGVHKACSVFQMAD 289 (555)
T ss_dssp TTCCCCCEEEEECCCCSCCHHHHHHHHHHHH--HHHHHHTSCHHHHGGGGC-CSCCSSSHHHHHHHHHHHHHHHTCCCSS
T ss_pred hhcCCCceEEEEecCcccChHHHHHHHHHHH--HHHHHHHHHHhhhhhhhc-ccccccchhhhHHHHHHHHHhhhhhccc
Confidence 111000 000001111111110 111111111111000000 00001110
Q ss_pred ---HHHHHHHHHHHHHH------HHH-hcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc-------CchHHH----HH
Q 002937 544 ---QKEYYKAILTRNYQ------ILT-RRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE-------DTNESF----KQ 602 (864)
Q Consensus 544 ---q~~~Y~~i~~~~~~------~l~-~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~-------~~~~~~----~~ 602 (864)
+...+..+...... .+. .... ........+...+....- ........ .....+ ..
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (555)
T 3tbk_A 290 KEEESRVCKALFLYTSHLRKYNDALIISEDA---QMTDALNYLKAFFHDVRE-AAFDETERELTRRFEEKLEELEKVSRD 365 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHCC------HHHHHHHHHHTTHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHhhhhhhhhhhccC
Confidence 00111111000000 000 0000 000000001111000000 00000000 000000 01
Q ss_pred hhhcccHHHHHHHHHHHHHHc--CceEEEEeccHHHHHHHHHHHhhC------------CCcEEEEeccCCHHHHHHHHH
Q 002937 603 LLESSGKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQIRID 668 (864)
Q Consensus 603 l~~~s~Kl~~l~~ll~~l~~~--g~kvlIFsq~~~~ld~L~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~ 668 (864)
....++|+..|.++|..+... ++|+||||++..+++.|.++|... |..+..++|+++..+|+++++
T Consensus 366 ~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 366 PSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 112488999999999887654 489999999999999999999876 345566667999999999999
Q ss_pred HhcC-CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 002937 669 RFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (864)
Q Consensus 669 ~Fn~-~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~ 747 (864)
+|++ +... +|++|+++++|||++.+++||+||++|||..+.||+|| |+.+.+.+|.|++.++.++. .....
T Consensus 446 ~F~~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~ 517 (555)
T 3tbk_A 446 AFRASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANM 517 (555)
T ss_dssp ------CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHH
T ss_pred HHhcCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhh
Confidence 9987 4333 68999999999999999999999999999999999999 66789999999999999887 34444
Q ss_pred HhhhHHHHHhhhhhhcCCCHHHHHHH
Q 002937 748 KKMVLEHLVVGRLKAQNINQEELDDI 773 (864)
Q Consensus 748 ~K~~l~~~v~~~~~~~~~~~~~l~~l 773 (864)
.|..+....+..+ +.++.+++...
T Consensus 518 ~~e~~~~~~~~~~--~~~~~~~~~~~ 541 (555)
T 3tbk_A 518 IKEKIMNESILRL--QTWDEMKFGKT 541 (555)
T ss_dssp HHHHHHHHHHHHH--HHSCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCChHHHHHH
Confidence 4444555544443 23455555433
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.5e-36 Score=365.10 Aligned_cols=439 Identities=15% Similarity=0.170 Sum_probs=227.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecc-ccHHHHHHHHHHHcC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~-sll~qW~~E~~~~~p 357 (864)
..+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||||. +++.||.++|.++++
T Consensus 246 ~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 468999999999887 4578999999999999999887776665443 4589999995 688999999999987
Q ss_pred --CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--cc-CCcceeEE
Q 002937 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCM 432 (864)
Q Consensus 358 --~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l-~~~~w~~v 432 (864)
++++..++|........... ...++|+|+|++.+..... .+ ....|++|
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp GGTCCEEEECCC-----CHHHH--------------------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred cCCceEEEEeCCcchhhhHHHh--------------------------hCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 78999999987543211110 1257899999999976432 22 33468999
Q ss_pred EecccccccCcccHHHHHHHhc---------ccccEEEeecCCCCCCHhHHHh-------hhhhcCCCCC----CChHHH
Q 002937 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFM-------LMHFLDAGKF----GSLEEF 492 (864)
Q Consensus 433 IvDEaH~lkn~~s~~~~~l~~l---------~~~~rllLTgTP~~n~~~el~~-------ll~~l~p~~~----~~~~~f 492 (864)
||||||++.+..+ ....+..+ ...++++|||||.+++..++.. +...++...+ .....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l 454 (797)
T 4a2q_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (797)
T ss_dssp EETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHH
Confidence 9999999988654 22222222 1256899999998876433332 2223332211 111222
Q ss_pred HHHHhccc----------h---HHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 002937 493 QEEFKDIN----------Q---EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQIL 559 (864)
Q Consensus 493 ~~~~~~~~----------~---~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l 559 (864)
...+.... . ......+...+..+.- ++.. ++.... .-...+.. ..|...+.......
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----~~~~-l~~l~~-~~~~~~g~---~~~~~~~~~~~~~~ 524 (797)
T 4a2q_A 455 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMR-----TIYS-VDTLSQ-NSKKDFGT---QNYEHWIVVTQRKC 524 (797)
T ss_dssp HHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHH-----HC--------------CCSS---HHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHH-----HHHh-hHHhhh-hccccccc---hhHHHHHHHHHHHH
Confidence 22221100 0 0111111111111110 0000 000000 00011111 11221111111100
Q ss_pred HhcC-CCc-------chHHHHHHHHHHHhCcccccCCC-----------------CCCccCchHHH--------------
Q 002937 560 TRRG-GAQ-------ISLINVVMELRKLCCHPYMLEGV-----------------EPDIEDTNESF-------------- 600 (864)
Q Consensus 560 ~~~~-~~~-------~~~~~~~~~lrk~~~hp~l~~~~-----------------~~~~~~~~~~~-------------- 600 (864)
.... ... ..+......+++....-.+.+.. ..........+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 604 (797)
T 4a2q_A 525 RLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604 (797)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh
Confidence 0000 000 00111111111110000000000 00000000000
Q ss_pred -HHhhhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhC------------CCcEEEEeccCCHHHHHH
Q 002937 601 -KQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQI 665 (864)
Q Consensus 601 -~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~------------g~~~~~i~G~~~~~~R~~ 665 (864)
......++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|++
T Consensus 605 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~ 684 (797)
T 4a2q_A 605 SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 684 (797)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------
T ss_pred hcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHH
Confidence 000124889999999998754 56789999999999999999999763 667777888899999999
Q ss_pred HHHHhcC-CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHH
Q 002937 666 RIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 666 ~i~~Fn~-~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~ 744 (864)
++++|++ +... +|++|+++|+|||+++|++||+||++|||..++||+|| +| .+++.+|.|++.++++++ ..
T Consensus 685 ~l~~F~~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~ 756 (797)
T 4a2q_A 685 VLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EK 756 (797)
T ss_dssp ---------CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HH
T ss_pred HHHHhhccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HH
Confidence 9999988 4333 79999999999999999999999999999999999999 55 578889999999999998 55
Q ss_pred HHHHhhhHHHHHhhhhhhcCCCHHHHHH
Q 002937 745 MTKKKMVLEHLVVGRLKAQNINQEELDD 772 (864)
Q Consensus 745 ~~~~K~~l~~~v~~~~~~~~~~~~~l~~ 772 (864)
....|..+...++..+ +.++.+++..
T Consensus 757 ~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (797)
T 4a2q_A 757 CNRYKEEMMNKAVEKI--QKWDEETFAK 782 (797)
T ss_dssp HHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hcCCHHHHHH
Confidence 6666666666666554 3456655543
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=1.8e-36 Score=318.89 Aligned_cols=212 Identities=23% Similarity=0.235 Sum_probs=168.4
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh---cCCC-----cchHHHHHHHHHHHhCccccc-CCCCCCccCchH
Q 002937 528 LPPKKELILRVELSSKQKEYYKAILTRNYQILTR---RGGA-----QISLINVVMELRKLCCHPYML-EGVEPDIEDTNE 598 (864)
Q Consensus 528 lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~---~~~~-----~~~~~~~~~~lrk~~~hp~l~-~~~~~~~~~~~~ 598 (864)
.|++.+++++++||+.|+++|+.++..+...+.+ +.+. ..++.+.+|+||++||||||+ +...+......+
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 4899999999999999999999999887665542 2221 136789999999999999999 444443333333
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCce
Q 002937 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (864)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~ 678 (864)
....++..|||+.+|.++|..+.+.|+|||||||++.++|+|+++|..+|++|.|+||++.. .+++. .++..+
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCce
Confidence 45678889999999999999999999999999999999999999999999999999999544 33221 134556
Q ss_pred EEEeeccccccCcC-----CCCCCEEEEeCCCCCcchh-hHHHHHHHHh--CCCCcEEEEEEEeCCCHHHHHHHHHH
Q 002937 679 CFLLSTRAGGLGIN-----LATADTVIIYDSDWNPHAD-LQAMARAHRL--GQTNKVMIFRLITRGSIEERMMQMTK 747 (864)
Q Consensus 679 v~Llst~a~~~Gin-----L~~a~~VI~~d~~wnp~~~-~Qa~gR~~Ri--GQ~~~V~Vy~lv~~~TiEe~i~~~~~ 747 (864)
++|+ |++||.|+| |++||+||+||++|||+.+ +||+.|+||+ ||+++|.||||++.+|+|+.++...+
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 6666 678888886 8999999999999999998 9999999999 68999999999999999999998755
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.7e-34 Score=330.06 Aligned_cols=348 Identities=12% Similarity=0.129 Sum_probs=253.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHH--cCCCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATW--APQMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~--~p~~~ 360 (864)
.+|+|||.++++++.. +.+++|+++||+|||++++.++......+.+++|||||. ++..||.++|.+| .++..
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 3899999999998753 478999999999999999887777665555699999996 6779999999998 45566
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l 440 (864)
+..++|...... ......+|+|+||+.+...... ....|++||+||+|++
T Consensus 188 v~~~~~~~~~~~-----------------------------~~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 188 IKKIGGGASKDD-----------------------------KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLA 237 (510)
T ss_dssp EEECGGGCCTTG-----------------------------GGCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGC
T ss_pred eEEEecCCcccc-----------------------------ccccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCC
Confidence 776665432210 0124578999999998765332 2236899999999999
Q ss_pred cCcccHHHHHHHhc-ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHHHH
Q 002937 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRR 519 (864)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~lrr 519 (864)
.+. .....+..+ ...++++||||| .+...+++++..++++..+.... ...+
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------------- 289 (510)
T 2oca_A 238 TGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTT-----------SKLM-------------- 289 (510)
T ss_dssp CHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCCC-----------C-----------------
T ss_pred Ccc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeCH-----------HHHh--------------
Confidence 873 344445666 466889999999 55555667666666654332110 0000
Q ss_pred HHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCchHH
Q 002937 520 VKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES 599 (864)
Q Consensus 520 ~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~~~ 599 (864)
-...+++.....+.+.+++....... +. .+. ..
T Consensus 290 ----~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~---------------------------~~ 322 (510)
T 2oca_A 290 ----EDGQVTELKINSIFLRYPDEFTTKLK-------------GK---TYQ---------------------------EE 322 (510)
T ss_dssp ----------CCEEEEEEEECCHHHHHHHT-------------TC---CHH---------------------------HH
T ss_pred ----hCCcCCCceEEEEeecCChHHhcccc-------------cc---chH---------------------------HH
Confidence 00146777777888888765431100 00 000 01
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHc-CceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCce
Q 002937 600 FKQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (864)
Q Consensus 600 ~~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~ 678 (864)
+..+.....|...+.+++...... +.++|||+. +..++.|.+.|...+.++..++|+++..+|+++++.|+++...
T Consensus 323 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~-- 399 (510)
T 2oca_A 323 IKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI-- 399 (510)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC--
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC--
Confidence 112223345666666777665544 567778877 8888889999999988999999999999999999999975544
Q ss_pred EEEeec-cccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCC-cEEEEEEEeCCCHHHHHHH
Q 002937 679 CFLLST-RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 679 v~Llst-~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy~lv~~~TiEe~i~~ 744 (864)
+|++| .++++|||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.++.
T Consensus 400 -vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~~ 466 (510)
T 2oca_A 400 -IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSAN 466 (510)
T ss_dssp -EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSSS
T ss_pred -EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhhh
Confidence 68888 99999999999999999999999999999999999999987 8999999998776655543
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=339.08 Aligned_cols=426 Identities=15% Similarity=0.206 Sum_probs=240.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecc-ccHHHH-HHHHHHHc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRNW-EREFATWA 356 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-----~~~~~LIV~P~-sll~qW-~~E~~~~~ 356 (864)
.+|+|||.+++.++. .++++||+++||+|||++++..+..++.. ..+++|||+|. +++.|| .++|.+++
T Consensus 6 ~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 579999999999884 47899999999999999988877665432 22689999996 577999 99999999
Q ss_pred CC-CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--------cccCCc
Q 002937 357 PQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPI 427 (864)
Q Consensus 357 p~-~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--------~~l~~~ 427 (864)
+. +++..++|.......... .....+|+|+|++.+.... ..+...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~ 135 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPE--------------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQLS 135 (699)
T ss_dssp TTTSCEEEEC----CCCCHHH--------------------------HHHSCSEEEEEHHHHHHHTC--------CCCGG
T ss_pred CcCceEEEEeCCcchhhHHHh--------------------------hhcCCCEEEECHHHHHHHHhccccccccceecc
Confidence 76 899999887643211110 0135789999999997543 234445
Q ss_pred ceeEEEecccccccCccc--HHHH-HHHh-c-------------ccccEEEeecCCCCCC-------HhHHHhhhhhcCC
Q 002937 428 KWQCMIVDEGHRLKNKDS--KLFS-SLKQ-Y-------------STRHRVLLTGTPLQNN-------LDELFMLMHFLDA 483 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s--~~~~-~l~~-l-------------~~~~rllLTgTP~~n~-------~~el~~ll~~l~p 483 (864)
.|++|||||||++.+... .... .+.. + ....+++|||||..++ ..++..++..+++
T Consensus 136 ~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 136 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp GCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred cCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 799999999999854321 1111 1111 1 3356899999999863 3445556666666
Q ss_pred CCCCCh----HHHHHHHhccc------hHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 002937 484 GKFGSL----EEFQEEFKDIN------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (864)
Q Consensus 484 ~~~~~~----~~f~~~~~~~~------~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~ 553 (864)
..+... ..+........ .......+...+...+ ....... .+.|. -.+.. ..|.....
T Consensus 216 ~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~-~~i~~~~--~~~~~------~~~g~---~~~~~~~~ 283 (699)
T 4gl2_A 216 FTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIM-TRIQTYC--QMSPM------SDFGT---QPYEQWAI 283 (699)
T ss_dssp SCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHH-HHHHHHH--TCCCC------SCSSS---HHHHHHHH
T ss_pred CEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHH-HHHHHHh--ccCcc------hhccc---hHHHHHHH
Confidence 322211 22222111100 0000011111111111 0000000 11110 00111 11221111
Q ss_pred HHHHHHH-hcCCCcchH-------------------HHHHHHHHHHhCcccc-----cCC---CCCCccCchHHHHHhh-
Q 002937 554 RNYQILT-RRGGAQISL-------------------INVVMELRKLCCHPYM-----LEG---VEPDIEDTNESFKQLL- 604 (864)
Q Consensus 554 ~~~~~l~-~~~~~~~~~-------------------~~~~~~lrk~~~hp~l-----~~~---~~~~~~~~~~~~~~l~- 604 (864)
....... ......... ...+..++........ ... ...........+..+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (699)
T 4gl2_A 284 QMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFF 363 (699)
T ss_dssp HHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHH
Confidence 1000000 000000000 0000001100000000 000 0000000011111111
Q ss_pred --------------hcccHHHHHHHHHHHHHHc---CceEEEEeccHHHHHHHHHHHhhC------CCcEEEEecc----
Q 002937 605 --------------ESSGKLQLLDKMMVKLKEQ---GHRVLIYSQFQHMLDLLEDYLTFK------KWQYERIDGK---- 657 (864)
Q Consensus 605 --------------~~s~Kl~~l~~ll~~l~~~---g~kvlIFsq~~~~ld~L~~~L~~~------g~~~~~i~G~---- 657 (864)
..++|+..|.++|...... +.++|||+++..+++.|.++|... |+++..++|+
T Consensus 364 ~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~ 443 (699)
T 4gl2_A 364 ENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSS 443 (699)
T ss_dssp HHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCT
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCcc
Confidence 0456777788888775443 789999999999999999999987 9999999999
Q ss_pred ----CCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEE
Q 002937 658 ----VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (864)
Q Consensus 658 ----~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 733 (864)
++..+|++++++|+++... +|++|.++++|||++.+++||+||++|||..+.|++||++|-| ..++.+.
T Consensus 444 ~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 444 EFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp TCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999875443 7999999999999999999999999999999999999975544 4455566
Q ss_pred eCCCHHHHHHHHHHHhhhHHHHHhh
Q 002937 734 TRGSIEERMMQMTKKKMVLEHLVVG 758 (864)
Q Consensus 734 ~~~TiEe~i~~~~~~K~~l~~~v~~ 758 (864)
..++.+.........+..+....+.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 517 HSGSGVIERETVNDFREKMMYKAIH 541 (699)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6666555443333344444444443
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.5e-32 Score=332.38 Aligned_cols=416 Identities=15% Similarity=0.180 Sum_probs=222.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecc-ccHHHHHHHHHHHcC-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~----~~~~LIV~P~-sll~qW~~E~~~~~p- 357 (864)
.+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||+|. ++..||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~----l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPA----MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 57999999999998 4578999999999999999887776554322 2689999996 888999999999986
Q ss_pred -CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--c-CCcceeEEE
Q 002937 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (864)
Q Consensus 358 -~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l-~~~~w~~vI 433 (864)
++++..++|+...+..... .....+|+|+|++.+...... + ....|++||
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQ--------------------------IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHH--------------------------HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CCceEEEEeCCccccccHHH--------------------------hccCCCEEEECHHHHHHHHhcCcccccccccEEE
Confidence 6888888886533211100 012478999999999765332 2 345789999
Q ss_pred ecccccccCcccHHHHHHHhc---------ccccEEEeecCCCCCC-------HhHHHhhhhhcCCCCCCC---hHHHHH
Q 002937 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFGS---LEEFQE 494 (864)
Q Consensus 434 vDEaH~lkn~~s~~~~~l~~l---------~~~~rllLTgTP~~n~-------~~el~~ll~~l~p~~~~~---~~~f~~ 494 (864)
|||||++++..+........+ ...++|+|||||..++ ...+..++..++...+.. ...+..
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~ 221 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELE 221 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHH
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHH
Confidence 999999987664332221111 3357899999998544 444555555544433211 111122
Q ss_pred HHhccc-------hHHHHHHHHHHHhHHH--HHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH---HHh-
Q 002937 495 EFKDIN-------QEEQISRLHRMLAPHL--LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI---LTR- 561 (864)
Q Consensus 495 ~~~~~~-------~~~~~~~L~~~l~~~~--lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~---l~~- 561 (864)
.|.... ...+...+...+..++ ++.....+..++. . ...+..++.....|.......... +..
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (696)
T 2ykg_A 222 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE-N---LSQIQNREFGTQKYEQWIVTVQKACMVFQMP 297 (696)
T ss_dssp HHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGG-G---SSSCCSCCSSSHHHHHHHHHHHHTSCC----
T ss_pred hhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHH-H---hhccccccccchhHHHHHHHHHHHHHHhhcc
Confidence 221100 0000000001111000 1111112211100 0 001111222222232222111000 000
Q ss_pred cCCCc----chHHHHHHHHHHHhCcccccCCCC------------------CCccCchHHHH-----------Hhh----
Q 002937 562 RGGAQ----ISLINVVMELRKLCCHPYMLEGVE------------------PDIEDTNESFK-----------QLL---- 604 (864)
Q Consensus 562 ~~~~~----~~~~~~~~~lrk~~~hp~l~~~~~------------------~~~~~~~~~~~-----------~l~---- 604 (864)
..... ..+......+++. ++|..+.... .........+. .+.
T Consensus 298 ~~~~~~~~~~~l~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 298 DKDEESRICKALFLYTSHLRKY-NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred cchhhhHHHHHHHHHHHHHHHH-hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00000 0111222223322 1222211000 00000000000 000
Q ss_pred hcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhCC----CcEEEEec--------cCCHHHHHHHHHHh
Q 002937 605 ESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKK----WQYERIDG--------KVGGAERQIRIDRF 670 (864)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~g----~~~~~i~G--------~~~~~~R~~~i~~F 670 (864)
..+.|+..|.++|.... ..+.++|||+++..+++.|.++|...| +++..++| +++..+|++++++|
T Consensus 377 ~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp GCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 25789999999998764 357899999999999999999999888 89999955 99999999999999
Q ss_pred cC-CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHH
Q 002937 671 NA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (864)
Q Consensus 671 n~-~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~ 741 (864)
++ +... +|++|+++++|||++++++||+||++||+..+.|++|| +|. ++..++.|++.+++++.
T Consensus 457 ~~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 457 KASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ----CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred HhcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 87 4433 69999999999999999999999999999999999999 884 56788999998887664
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2e-32 Score=324.34 Aligned_cols=351 Identities=16% Similarity=0.180 Sum_probs=217.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhcCC--------CCceEEEec-cccHHHHH-HH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAP-LSTLRNWE-RE 351 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~-~~~ILade~GlGKTi~ai~~i~~l~~~~--------~~~~LIV~P-~sll~qW~-~E 351 (864)
+..|+|||.++++++...+.++ .+++|+++||+|||++++.++..+...+ .+++||||| .++..||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4589999999999997766665 5689999999999999999988886543 459999999 67779999 78
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc------cccC
Q 002937 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLK 425 (864)
Q Consensus 352 ~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~------~~l~ 425 (864)
|..|.+.. ..+.+. ......+|+|+||+.+.... ..+.
T Consensus 256 ~~~~~~~~--~~~~~~----------------------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGG----------------------------------KVVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp CTTTCSSE--EECCC------------------------------------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred HHhcchhh--hhhhcc----------------------------------CCCCCCcEEEEEhhhhccccccccccccCC
Confidence 88776422 111110 01235789999999987642 2344
Q ss_pred CcceeEEEecccccccCcc-cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHH
Q 002937 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (864)
Q Consensus 426 ~~~w~~vIvDEaH~lkn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~ 504 (864)
...|++||+||||++.+.. +.....+..+...++++|||||..+...+++.++. +..+. ..
T Consensus 300 ~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~-----------~~---- 361 (590)
T 3h1t_A 300 QDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT-----------YS---- 361 (590)
T ss_dssp TTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE-----------EC----
T ss_pred CCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe-----------cC----
Confidence 4568999999999998753 34445566667788999999999888777666543 11110 00
Q ss_pred HHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCccc
Q 002937 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (864)
Q Consensus 505 ~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~ 584 (864)
+.+.+ ++ ..+++.....+......................+......
T Consensus 362 ---~~~~i---------~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 408 (590)
T 3h1t_A 362 ---LRQGI---------DD--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQ------------------- 408 (590)
T ss_dssp ---HHHHH---------HH--TSSCCEEEEEEEETTCC------------------------------------------
T ss_pred ---HHHHh---------hC--CccCCcEEEEeeeeeeccccccccccccccccccccccCC-------------------
Confidence 00000 00 1355555555555543222111111111000000000000
Q ss_pred ccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHH---HcCceEEEEeccHHHHHHHHHHHhhCCCc--------EEE
Q 002937 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ--------YER 653 (864)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~---~~g~kvlIFsq~~~~ld~L~~~L~~~g~~--------~~~ 653 (864)
...+...+....+...+.+.+..+. ..+.|+||||+...+++.|.+.|...+.. +..
T Consensus 409 ------------~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 409 ------------TKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ------------HHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0001111222233334333333322 34579999999999999999999765443 678
Q ss_pred EeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCC---CCcEEEE
Q 002937 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ---TNKVMIF 730 (864)
Q Consensus 654 i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ---~~~V~Vy 730 (864)
++|.++ ++|++++++|++++....++|++|+++++|||++.+++||+++++||+..+.|++||++|.|+ +..+.||
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 899875 479999999998776555689999999999999999999999999999999999999999995 5678888
Q ss_pred EEE
Q 002937 731 RLI 733 (864)
Q Consensus 731 ~lv 733 (864)
.++
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 877
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=5.3e-30 Score=287.85 Aligned_cols=327 Identities=15% Similarity=0.187 Sum_probs=224.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHc---CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWA---PQ 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~---p~ 358 (864)
.|+|||.+++.++ ..+++++++++||+|||++++..+...... ...++|||||. .+..||.+++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 5999999999887 457899999999999999987666655433 23489999996 77799999999986 57
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
+++..++|........... .....+|+|+|++.+..... .+....+++||+||
T Consensus 106 ~~~~~~~g~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp CCEEEECTTSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred eEEEEEeCCCCHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 8888888876544322211 01246899999999865322 23345789999999
Q ss_pred cccccCccc---HHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 002937 437 GHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (864)
Q Consensus 437 aH~lkn~~s---~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l 512 (864)
||++.+... .....+.... ....+++||||-.. ..++.. .+
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~------------------~~---------------- 205 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPVCR------------------KF---------------- 205 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHHHHH------------------HH----------------
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHHHH------------------HH----------------
Confidence 999976322 1222222232 45679999998422 111000 00
Q ss_pred hHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
+..... +.+.-. ..... .. ..+.+.
T Consensus 206 ---------------~~~~~~--~~~~~~---------------------~~~~~---------~~-~~~~~~------- 230 (391)
T 1xti_A 206 ---------------MQDPME--IFVDDE---------------------TKLTL---------HG-LQQYYV------- 230 (391)
T ss_dssp ---------------CSSCEE--EECCCC---------------------CCCCC---------TT-CEEEEE-------
T ss_pred ---------------cCCCeE--EEecCc---------------------cccCc---------cc-ceEEEE-------
Confidence 000000 000000 00000 00 000000
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
......|...+.+++... .++++|||++....++.+.+.|...|+++..++|+++..+|+++++.|++
T Consensus 231 ----------~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 231 ----------KLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp ----------ECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ----------EcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 011234556666666653 57899999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
+... +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...+. .|++.. -+..++....+
T Consensus 299 ~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 299 FQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp TCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHH
T ss_pred CCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHH
Confidence 6544 7999999999999999999999999999999999999999999766554 344432 23444444443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.4e-30 Score=283.80 Aligned_cols=311 Identities=15% Similarity=0.229 Sum_probs=219.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecc-ccHHHHHHHHHHHcC--CCe
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (864)
+|+|||.+++.++. ..+.++++..+||+|||++++..+..+... ...++|||+|. .+..||.+++.++++ +..
T Consensus 28 ~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 28 KPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp SCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 68999999998774 334789999999999999987777666544 34489999996 666999999999975 456
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDEaH 438 (864)
+..+.|........... ...+|+|+|++.+..... .+....|++||+||||
T Consensus 105 v~~~~~~~~~~~~~~~~---------------------------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKAL---------------------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EEEECTTSCHHHHHHHH---------------------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEEECCcchHHHHhhc---------------------------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 77777765544322211 246899999999865432 2333468899999999
Q ss_pred cccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHH
Q 002937 439 RLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (864)
Q Consensus 439 ~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~ 515 (864)
++.+.. ......+..+. ....+++||||-.. +..+ +..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~~----------------------------------~~~- 198 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPRE----ILNL----------------------------------AKK- 198 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHH----HHHH----------------------------------HHH-
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHH----HHHH----------------------------------HHH-
Confidence 987654 22333344443 45679999998321 0000 000
Q ss_pred HHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccC
Q 002937 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (864)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~ 595 (864)
.+.. ...+...... . ..+.+.
T Consensus 199 -----------~~~~--~~~~~~~~~~----------------------~--------------~~~~~~---------- 219 (367)
T 1hv8_A 199 -----------YMGD--YSFIKAKINA----------------------N--------------IEQSYV---------- 219 (367)
T ss_dssp -----------HCCS--EEEEECCSSS----------------------S--------------SEEEEE----------
T ss_pred -----------HcCC--CeEEEecCCC----------------------C--------------ceEEEE----------
Confidence 0000 0001000000 0 000000
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCC
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~ 675 (864)
......|+..+.+++. ..+.++|||++....++.+.+.|...|+++..++|+++..+|+++++.|+++..
T Consensus 220 -------~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 220 -------EVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp -------ECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred -------EeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 0012234444544443 567899999999999999999999999999999999999999999999987544
Q ss_pred CceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 676 ~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
. +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...+ +.+++....
T Consensus 290 ~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 290 R---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp S---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred e---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 3 799999999999999999999999999999999999999999987655 445565533
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=3.1e-29 Score=282.67 Aligned_cols=313 Identities=17% Similarity=0.211 Sum_probs=219.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHcC--CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~p--~~ 359 (864)
.|+|||.+++.++. .++++++..+||+|||++++..+...... ...++|||+|. .+..||.+++.++.+ +.
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999998874 46789999999999999886666555433 23489999996 667899999999985 46
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEeccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEG 437 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDEa 437 (864)
.+..+.|........... ....+|+|+|++.+..... ......+++||+|||
T Consensus 119 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILRL--------------------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp CEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred eEEEEeCCcchHHHHHHh--------------------------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 777777776554332211 1357899999998854322 233346899999999
Q ss_pred ccccCccc-HHHHH-HHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 438 HRLKNKDS-KLFSS-LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 438 H~lkn~~s-~~~~~-l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
|++.+... ..... +..+. ....+++|||+-. .+. ..+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~----~~~----------------------------------~~~~~ 214 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPL----TVK----------------------------------EFMVK 214 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCH----HHH----------------------------------HHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCH----HHH----------------------------------HHHHH
Confidence 99876431 12222 22222 4567999999620 000 00000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
.+.......+...++ ... ..+-+
T Consensus 215 ------------~~~~~~~~~~~~~~~----------------------~~~-------------~~~~~---------- 237 (400)
T 1s2m_A 215 ------------HLHKPYEINLMEELT----------------------LKG-------------ITQYY---------- 237 (400)
T ss_dssp ------------HCSSCEEESCCSSCB----------------------CTT-------------EEEEE----------
T ss_pred ------------HcCCCeEEEeccccc----------------------cCC-------------ceeEE----------
Confidence 010000000000000 000 00000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
.......|+..+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+.+++.|+++.
T Consensus 238 -------~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (400)
T 1s2m_A 238 -------AFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 308 (400)
T ss_dssp -------EECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred -------EEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 0011345777777777653 5679999999999999999999999999999999999999999999998765
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.. +|++|.++++|+|++++++||++|++||+..+.|++||++|.|+.. .++.|++.+
T Consensus 309 ~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 309 VR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp SS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred Cc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 44 7999999999999999999999999999999999999999999764 445566665
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=1.8e-28 Score=277.31 Aligned_cols=315 Identities=17% Similarity=0.230 Sum_probs=220.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHcC--CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~p--~~ 359 (864)
.|+|||.+++.++ ..++++|+..+||+|||++++..+...... ...++|||+|. .+..||.+++.++.. ++
T Consensus 59 ~~~~~Q~~ai~~i----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 5999999999887 457889999999999999887666655432 34589999996 577899999999874 45
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEeccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEa 437 (864)
.+..+.|........... ....+|+|+|++.+.... ..+....+++||+|||
T Consensus 135 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKL--------------------------DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp CEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEEEECCCCHHHHHHHh--------------------------hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 666777765554433221 124589999999885432 2334456899999999
Q ss_pred ccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 438 H~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
|++.+.. ......+..+. ....+++||||- .++..++......... ..
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~~~~~-----------~~-------------- 239 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLP----HEILEMTNKFMTDPIR-----------IL-------------- 239 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC----HHHHTTGGGTCSSCEE-----------EC--------------
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC----HHHHHHHHHHcCCCEE-----------EE--------------
Confidence 9987654 23333344443 456799999983 1222221111000000 00
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
........+......+.+.-
T Consensus 240 ------~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 259 (410)
T 2j0s_A 240 ------VKRDELTLEGIKQFFVAVER------------------------------------------------------ 259 (410)
T ss_dssp ------CCGGGCSCTTEEEEEEEESS------------------------------------------------------
T ss_pred ------ecCccccCCCceEEEEEeCc------------------------------------------------------
Confidence 00000011111111111110
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
...|+..|.+++... .+.++|||++....++.+.+.|...|+++..++|+++..+|+++++.|+++.
T Consensus 260 -----------~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 260 -----------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp -----------TTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred -----------HHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 122455555666553 3569999999999999999999999999999999999999999999998765
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.|+.. .++.|++..
T Consensus 327 ~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (410)
T 2j0s_A 327 SR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND 383 (410)
T ss_dssp SC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG
T ss_pred CC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHH
Confidence 43 7999999999999999999999999999999999999999999764 445566654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=2.3e-29 Score=276.41 Aligned_cols=311 Identities=15% Similarity=0.222 Sum_probs=211.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC--CCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (864)
..|+|||.+++.++ .+++++++..+||+|||++++..+... ..++|||+|. .+..||.+++.++.+ +..
T Consensus 15 ~~l~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 86 (337)
T 2z0m_A 15 KNFTEVQSKTIPLM----LQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTK 86 (337)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCc
Confidence 36899999999887 467899999999999999877666543 3589999996 677999999999874 467
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEaH 438 (864)
+..++|........... ...+|+|+|++.+.... ..+....|++||+||||
T Consensus 87 ~~~~~~~~~~~~~~~~~---------------------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINRV---------------------------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp EEEECTTSCHHHHHHHH---------------------------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred EEEEECCcchHHHHhhc---------------------------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 77777765444322211 24789999999986532 22334578999999999
Q ss_pred cccCcc--cHHHHHHHhcccc-cEEEeecCCCCCCHhHHHhhhh-hcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 439 RLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMH-FLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 439 ~lkn~~--s~~~~~l~~l~~~-~rllLTgTP~~n~~~el~~ll~-~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
++.+.. ......+..+... ..+++||||-.. +...+. ++.. . ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~----~~~~~~~~~~~-~-----------~~~--------------- 188 (337)
T 2z0m_A 140 LMFEMGFIDDIKIILAQTSNRKITGLFSATIPEE----IRKVVKDFITN-Y-----------EEI--------------- 188 (337)
T ss_dssp HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHH----HHHHHHHHSCS-C-----------EEE---------------
T ss_pred HhhccccHHHHHHHHhhCCcccEEEEEeCcCCHH----HHHHHHHhcCC-c-----------eee---------------
Confidence 986543 2333344444444 446789998311 110000 0000 0 000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
......+......+.+....
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 208 (337)
T 2z0m_A 189 --------EACIGLANVEHKFVHVKDDW---------------------------------------------------- 208 (337)
T ss_dssp --------ECSGGGGGEEEEEEECSSSS----------------------------------------------------
T ss_pred --------ecccccCCceEEEEEeChHH----------------------------------------------------
Confidence 00000111111111111000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
......+. ...+.++|||++....++.+.+.|. .+..++|+++..+|.++++.|+++.
T Consensus 209 ----------------~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~ 266 (337)
T 2z0m_A 209 ----------------RSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGE 266 (337)
T ss_dssp ----------------HHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ----------------HHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCC
Confidence 00001111 1357899999999999999998887 6789999999999999999998765
Q ss_pred CCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHH
Q 002937 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (864)
Q Consensus 675 ~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~ 746 (864)
.. +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...+.+|.. ...++.+.|.+..
T Consensus 267 ~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 267 YD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp CS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred Cc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 44 79999999999999999999999999999999999999999999887777665 4444555554443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=282.24 Aligned_cols=317 Identities=16% Similarity=0.196 Sum_probs=208.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHc--CC
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWA--PQ 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~--p~ 358 (864)
..++|||.+++..+ ..++++|+..+||+|||++++..+...... ...++|||+|. .+..||.+++.+++ .+
T Consensus 61 ~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHH----hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 36899999999877 457889999999999999976666554433 34489999996 57789999999987 34
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
..+....|........... .....+|+|+|++.+..... .+....+++||+||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKL-------------------------QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp CCEEECCCCTTHHHHHHHH-------------------------TTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred ceEEEEECCcchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 5666666665544433221 11357899999998865322 23344688999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
||++.+.. ......+..+. ....++|||||-. ++..++.
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~---------------------------------- 233 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS----DVLEVTK---------------------------------- 233 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCH----HHHHHHT----------------------------------
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH----HHHHHHH----------------------------------
Confidence 99986443 34445555553 4457999999821 1111000
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
..+.... .+.+.... .... ...+.+...
T Consensus 234 ------------~~~~~~~--~~~~~~~~---------------------~~~~-----------~~~~~~~~~------ 261 (414)
T 3eiq_A 234 ------------KFMRDPI--RILVKKEE---------------------LTLE-----------GIRQFYINV------ 261 (414)
T ss_dssp ------------TTCSSCE--EECCCCCC---------------------CCTT-----------SCCEEEEEC------
T ss_pred ------------HHcCCCE--EEEecCCc---------------------cCCC-----------CceEEEEEe------
Confidence 0000000 00000000 0000 000000000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
-....|+..+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|+++
T Consensus 262 ----------~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 329 (414)
T 3eiq_A 262 ----------EREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 329 (414)
T ss_dssp ----------SSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC
T ss_pred ----------ChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 01234667777776553 457999999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.. .+|++|.++++|||++.+++||++|++||+..+.|++||++|.|+... +|.|++..
T Consensus 330 ~~---~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 330 SS---RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp ------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred CC---cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 43 379999999999999999999999999999999999999999997654 45567665
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=4.2e-29 Score=280.74 Aligned_cols=315 Identities=16% Similarity=0.197 Sum_probs=110.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cC-CCCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~-~~-~~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
.+|+|||.+++.++. .++++++..+||+|||++++..+.... .. ...++|||+|. .+..||.+++.++.+ +
T Consensus 42 ~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 379999999998874 467899999999999998655444433 33 23489999996 677899999999874 4
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
..+..++|........... ...+|+|+|++.+..... .+....+++||+||
T Consensus 118 ~~~~~~~g~~~~~~~~~~~---------------------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEGL---------------------------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CCEEEECSSCCHHHHHHHH---------------------------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eeEEEEeCCCchHHHHhhc---------------------------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 6777787765543322211 146799999999865322 33345789999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
||++.+.+ ......+..+. ....+++||||-. ++. ..+.
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~----------------------------------~~~~ 212 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVL----------------------------------EVTT 212 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHH----------------------------------HHHH
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH----HHH----------------------------------HHHH
Confidence 99985432 33344444443 4468999999821 000 0000
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
. .+..... +.+.-..... . .+.+ .+.
T Consensus 213 ~------------~~~~~~~--~~~~~~~~~~---~-------------------------~~~~----~~~-------- 238 (394)
T 1fuu_A 213 K------------FMRNPVR--ILVKKDELTL---E-------------------------GIKQ----FYV-------- 238 (394)
T ss_dssp H------------HCCSCEE--EEECC-----------------------------------------------------
T ss_pred H------------hcCCCeE--EEecCccccC---C-------------------------CceE----EEE--------
Confidence 0 0111111 1111000000 0 0000 000
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
..-....|...+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|+++
T Consensus 239 --------~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 239 --------NVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------EcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 0000122455555565543 356999999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
.. .+|++|.++++|+|++.+++||+++++|++..+.|++||++|.|+...+. .|++..
T Consensus 309 ~~---~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 309 SS---RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred CC---cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 43 37999999999999999999999999999999999999999999866544 445544
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=6.1e-28 Score=271.10 Aligned_cols=308 Identities=15% Similarity=0.188 Sum_probs=206.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
..++|||.+++..+... .++++|+..+||+|||++++..+...... ..+++|||+|. .+..||.+++.++.. +
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 36999999999887422 34889999999999999987666554432 23489999996 577899999999873 3
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDE 436 (864)
..+....+..... ......+|+|+|++.+.... ..+...++++||+||
T Consensus 104 ~~~~~~~~~~~~~------------------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 104 ITSQLIVPDSFEK------------------------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CCEEEESTTSSCT------------------------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred eeEEEEecCchhh------------------------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 4444444432111 11235789999999986532 223344689999999
Q ss_pred cccccCccc--HHHHH-HHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 002937 437 GHRLKNKDS--KLFSS-LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (864)
Q Consensus 437 aH~lkn~~s--~~~~~-l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l 512 (864)
||++.+... ..... ...+. ....+++||||-. .+..+...+.+.... ..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~~-----------~~------------ 206 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKIVPNANT-----------LE------------ 206 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSCSCEE-----------EC------------
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHhCCCCeE-----------EE------------
Confidence 999865322 22222 22232 3467999999831 111111000000000 00
Q ss_pred hHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCC
Q 002937 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (864)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~ 592 (864)
........+......+.+. .
T Consensus 207 --------~~~~~~~~~~~~~~~~~~~-~--------------------------------------------------- 226 (395)
T 3pey_A 207 --------LQTNEVNVDAIKQLYMDCK-N--------------------------------------------------- 226 (395)
T ss_dssp --------CCGGGCSCTTEEEEEEECS-S---------------------------------------------------
T ss_pred --------ccccccccccccEEEEEcC-c---------------------------------------------------
Confidence 0000000111111111111 0
Q ss_pred ccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
...|...+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|++
T Consensus 227 -------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 227 -------------EADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp -------------HHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred -------------hHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 112333333333322 46799999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeeccccccCcCCCCCCEEEEeCCCC------CcchhhHHHHHHHHhCCCCcEE
Q 002937 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 673 ~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~w------np~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
+... +|++|.++++|||++++++||+||++| |+..+.|++||++|.|+...+.
T Consensus 292 g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 350 (395)
T 3pey_A 292 GRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 350 (395)
T ss_dssp TSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred CCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE
Confidence 6544 799999999999999999999999999 9999999999999999765444
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=1e-27 Score=272.83 Aligned_cols=311 Identities=14% Similarity=0.197 Sum_probs=214.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcCC------CCceEEEecc-ccHHHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER------ISPHLVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~-~i~~l~~~~------~~~~LIV~P~-sll~qW~~E~~~~~ 356 (864)
.++|+|.+++..+ ..++++|+..+||+|||+.++. ++..+.... ...+|||+|. .+..||.+++.++.
T Consensus 78 ~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 5899999999877 4678999999999999998654 444554332 2379999996 67789999999987
Q ss_pred C--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEE
Q 002937 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (864)
Q Consensus 357 p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~v 432 (864)
. .+++..++|........... ....+|+|+|++.+..... .+....++++
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECI--------------------------TRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------hcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 4 45666677765544322211 1357899999999865322 2333467899
Q ss_pred EecccccccCcc--cHHHHHHHhc---ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l---~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~ 507 (864)
|+||||++...+ ......+..+ .....+++|||+- .++..+..
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~---------------------------- 255 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAG---------------------------- 255 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHH----------------------------
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHH----------------------------
Confidence 999999987643 3333444433 2456799999972 11111110
Q ss_pred HHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccC
Q 002937 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (864)
Q Consensus 508 L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~ 587 (864)
..+.... .+.+.... ..... + .+.+.
T Consensus 256 ------------------~~l~~~~--~i~~~~~~-------------------~~~~~------------i-~~~~~-- 281 (434)
T 2db3_A 256 ------------------EFLKNYV--FVAIGIVG-------------------GACSD------------V-KQTIY-- 281 (434)
T ss_dssp ------------------TTCSSCE--EEEESSTT-------------------CCCTT------------E-EEEEE--
T ss_pred ------------------HhccCCE--EEEecccc-------------------ccccc------------c-ceEEE--
Confidence 0111111 11111000 00000 0 00000
Q ss_pred CCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHH
Q 002937 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (864)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i 667 (864)
.+....|...|.+++.. .+.++|||++....++.|.+.|...|+++..++|+++..+|++++
T Consensus 282 ---------------~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 343 (434)
T 2db3_A 282 ---------------EVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 343 (434)
T ss_dssp ---------------ECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHH
T ss_pred ---------------EeCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 00123355555555543 455699999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEe
Q 002937 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (864)
Q Consensus 668 ~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 734 (864)
+.|+++... +|++|.++++|||++.+++||+||+++++..+.||+||++|.|+...+ +.|++
T Consensus 344 ~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~ 405 (434)
T 2db3_A 344 RDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFD 405 (434)
T ss_dssp HHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred HHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEe
Confidence 999876544 799999999999999999999999999999999999999999986554 44555
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=9.4e-28 Score=272.01 Aligned_cols=315 Identities=18% Similarity=0.282 Sum_probs=213.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcCC-------------------CCceEEEecc-
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-------------------ISPHLVVAPL- 342 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~-~i~~l~~~~-------------------~~~~LIV~P~- 342 (864)
..++|+|.+++..+ ..++++|+..+||+|||+.++. ++..+.... ...+||++|.
T Consensus 36 ~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 37999999999876 5678999999999999987644 444443221 1368999996
Q ss_pred ccHHHHHHHHHHHc--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc
Q 002937 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (864)
Q Consensus 343 sll~qW~~E~~~~~--p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~ 420 (864)
.+..||.+++.++. .++++..++|........... ....+|+|+|++.+...
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL--------------------------ERGCHLLVATPGRLVDM 165 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh--------------------------hCCCCEEEEChHHHHHH
Confidence 67789999999887 356777888776554433221 12468999999998653
Q ss_pred cc--ccCCcceeEEEecccccccCcc--cHHHHHHHh--cc---cccEEEeecCCCCCCHhHHHhhhh-hcCCCCCCChH
Q 002937 421 SA--SLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQ--YS---TRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFGSLE 490 (864)
Q Consensus 421 ~~--~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~--l~---~~~rllLTgTP~~n~~~el~~ll~-~l~p~~~~~~~ 490 (864)
.. .+....+++||+||||++...+ ......+.. +. ....+++||||-. ++..++. ++....+
T Consensus 166 l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~~---- 237 (417)
T 2i4i_A 166 MERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARDFLDEYIF---- 237 (417)
T ss_dssp HHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHHHCSSCEE----
T ss_pred HHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHHHcCCCEE----
Confidence 22 2333467899999999986543 222222322 11 2457999999821 1111100 0000000
Q ss_pred HHHHHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Q 002937 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLI 570 (864)
Q Consensus 491 ~f~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~ 570 (864)
... .......+......+.+
T Consensus 238 --------~~~--------------------~~~~~~~~~i~~~~~~~-------------------------------- 257 (417)
T 2i4i_A 238 --------LAV--------------------GRVGSTSENITQKVVWV-------------------------------- 257 (417)
T ss_dssp --------EEE--------------------C----CCSSEEEEEEEC--------------------------------
T ss_pred --------EEe--------------------CCCCCCccCceEEEEEe--------------------------------
Confidence 000 00000000011111111
Q ss_pred HHHHHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCc
Q 002937 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 650 (864)
Q Consensus 571 ~~~~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~ 650 (864)
....|...+.+++... ..+.++|||++....++.+.++|...|+.
T Consensus 258 ----------------------------------~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 302 (417)
T 2i4i_A 258 ----------------------------------EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYA 302 (417)
T ss_dssp ----------------------------------CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCC
Confidence 1233555555665543 24779999999999999999999999999
Q ss_pred EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 651 ~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
+..++|+++..+|.++++.|+++... +|++|.++++|||++.+++||+||++|++..+.|++||++|.|+.. .++
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~ 377 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LAT 377 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEE
T ss_pred eeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEE
Confidence 99999999999999999999875544 7999999999999999999999999999999999999999999764 445
Q ss_pred EEEeCC
Q 002937 731 RLITRG 736 (864)
Q Consensus 731 ~lv~~~ 736 (864)
.|++..
T Consensus 378 ~~~~~~ 383 (417)
T 2i4i_A 378 SFFNER 383 (417)
T ss_dssp EEECGG
T ss_pred EEEccc
Confidence 566543
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=3e-26 Score=259.50 Aligned_cols=317 Identities=14% Similarity=0.169 Sum_probs=218.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC-CCeE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p-~~~~ 361 (864)
.+++|+|.+++..+ ..++++|+..+||+|||+.++..+..+. ...+.+||++|. .+..||.+++..+.+ ++++
T Consensus 20 ~~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 20 KDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 35789999999877 4678999999999999996665555444 334589999996 677999999999985 7788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lk 441 (864)
..++|...........+. -....++|+|+|++.+......+....+++||+||||++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~----------------------l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKS----------------------FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp EECCTTSCHHHHHHHHHH----------------------HHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHH
T ss_pred EEEECCCChhhHHHHHHH----------------------hhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhh
Confidence 888887655221111100 0012478999999999766555666688999999999873
Q ss_pred C-------------cccH-HHHHHHhc------------ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHH
Q 002937 442 N-------------KDSK-LFSSLKQY------------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (864)
Q Consensus 442 n-------------~~s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~ 495 (864)
. .... ....+..+ .....+++||||........+. ..
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~-----------------~~ 215 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-----------------RD 215 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH-----------------HH
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH-----------------HH
Confidence 2 2222 23333333 3446799999976554322110 00
Q ss_pred HhccchHHHHHHHHHHHhHHHHHHHHhhHh--hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 002937 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVV 573 (864)
Q Consensus 496 ~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~--~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~ 573 (864)
+ +. -.+. ...++.....+ +
T Consensus 216 ~---------------~~--------~~~~~~~~~~~~i~~~~-~----------------------------------- 236 (414)
T 3oiy_A 216 L---------------LN--------FTVGRLVSVARNITHVR-I----------------------------------- 236 (414)
T ss_dssp H---------------HS--------CCSSCCCCCCCSEEEEE-E-----------------------------------
T ss_pred h---------------hc--------cCcCccccccccchhee-e-----------------------------------
Confidence 0 00 0000 00011111100 0
Q ss_pred HHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEE-
Q 002937 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE- 652 (864)
Q Consensus 574 ~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~- 652 (864)
...|...|.+++.. .+.++|||++....++.+.+.|...|+++.
T Consensus 237 --------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 281 (414)
T 3oiy_A 237 --------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGE 281 (414)
T ss_dssp --------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred --------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceeh
Confidence 11233444555554 468999999999999999999999999998
Q ss_pred EEeccCCHHHHHHHHHHhcCCCCCceEEEee----ccccccCcCCCC-CCEEEEeCCC--CCcchhhHHHHHHHHhCCC-
Q 002937 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD--WNPHADLQAMARAHRLGQT- 724 (864)
Q Consensus 653 ~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----t~a~~~GinL~~-a~~VI~~d~~--wnp~~~~Qa~gR~~RiGQ~- 724 (864)
.++|. +|+ ++.|+++... +|++ |.++++|||++. +++||+||++ +++..+.|++||++|.|+.
T Consensus 282 ~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~ 352 (414)
T 3oiy_A 282 TWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGV 352 (414)
T ss_dssp SSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTE
T ss_pred hhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCC
Confidence 88884 444 9999876554 6888 999999999999 9999999999 9999999999999999986
Q ss_pred -CcEEEEEEEeCCCHHHHHHHHHHHhhh
Q 002937 725 -NKVMIFRLITRGSIEERMMQMTKKKMV 751 (864)
Q Consensus 725 -~~V~Vy~lv~~~TiEe~i~~~~~~K~~ 751 (864)
+.-.++.|+ -|...++..++...
T Consensus 353 ~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 353 LVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CcceEEEEEE----ccHHHHHHHHHHhc
Confidence 566666776 23445555554444
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=1.9e-26 Score=260.60 Aligned_cols=327 Identities=14% Similarity=0.194 Sum_probs=215.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC-CCceEEEecc-ccHHHHHHHHHHHc---C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFATWA---P 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~~-~~~~LIV~P~-sll~qW~~E~~~~~---p 357 (864)
..++|+|.+++..+... .++++|+..+||+|||++++..+..... .. ..++|||+|. .+..||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999877421 3588999999999999997555544433 33 2389999996 56688888888775 4
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc---cccCCcceeEEEe
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIV 434 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~---~~l~~~~w~~vIv 434 (864)
+..+....|..... .......+|+|+|++.+.... ..+....+++||+
T Consensus 124 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 124 ELKLAYAVRGNKLE-----------------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp TCCEEEECTTCCCC-----------------------------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred cceEEEeecCcchh-----------------------------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 56666665543211 011235689999999996543 2333357899999
Q ss_pred cccccccCc--ccHHH-HHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 002937 435 DEGHRLKNK--DSKLF-SSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (864)
Q Consensus 435 DEaH~lkn~--~s~~~-~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~ 510 (864)
||||++... ..... ..+..+. ....+++||||-. ++..+.....+...
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~------------------------ 226 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPDPN------------------------ 226 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSSSCE------------------------
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcCCCe------------------------
Confidence 999998542 22222 2333333 3467999999831 11111110000000
Q ss_pred HHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCC
Q 002937 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~ 590 (864)
.+ .. .......+......+.+..
T Consensus 227 -----~~-~~-~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 249 (412)
T 3fht_A 227 -----VI-KL-KREEETLDTIKQYYVLCSS-------------------------------------------------- 249 (412)
T ss_dssp -----EE-CC-CGGGSSCTTEEEEEEECSS--------------------------------------------------
T ss_pred -----EE-ee-ccccccccCceEEEEEcCC--------------------------------------------------
Confidence 00 00 0000001111111111110
Q ss_pred CCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHh
Q 002937 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 670 (864)
...|+..+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|
T Consensus 250 ---------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 250 ---------------RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp ---------------HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 122444455555442 467999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCc------chhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHH
Q 002937 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 671 n~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~ 744 (864)
+++... +|++|.++++|||++++++||+||++|++ ..+.|++||++|.|+...+ +.|+.. .-+..++.
T Consensus 313 ~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~ 386 (412)
T 3fht_A 313 REGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILN 386 (412)
T ss_dssp HTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHH
T ss_pred HCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHH
Confidence 876544 79999999999999999999999999987 5899999999999975444 444543 23345555
Q ss_pred HHHHh
Q 002937 745 MTKKK 749 (864)
Q Consensus 745 ~~~~K 749 (864)
...++
T Consensus 387 ~i~~~ 391 (412)
T 3fht_A 387 RIQEH 391 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.8e-26 Score=267.71 Aligned_cols=305 Identities=18% Similarity=0.165 Sum_probs=212.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..++|+|.+++..+ ..++++++..+||+|||+.++..+. .. .+.+|||+|. +++.||.+.+..+ +..+.
T Consensus 24 ~~~r~~Q~~~i~~i----l~g~d~lv~apTGsGKTl~~~lp~l--~~--~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~ 93 (523)
T 1oyw_A 24 QQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPAL--LL--NGLTVVVSPLISLMKDQVDQLQAN--GVAAA 93 (523)
T ss_dssp SSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHH--HS--SSEEEEECSCHHHHHHHHHHHHHT--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCcHHHHHHHHHHH--Hh--CCCEEEECChHHHHHHHHHHHHHc--CCcEE
Confidence 36899999999887 4678999999999999986643322 22 3589999995 7778999999886 45667
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc--ccccCCcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~--~~~l~~~~w~~vIvDEaH~l 440 (864)
.++|............ .......+++++|++.+... ...+....+.+|||||||.+
T Consensus 94 ~l~~~~~~~~~~~~~~----------------------~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMT----------------------GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp EECTTSCHHHHHHHHH----------------------HHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 7776544322111100 00113578999999999643 23345568899999999998
Q ss_pred cCccc---HHHH----HHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 002937 441 KNKDS---KLFS----SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (864)
Q Consensus 441 kn~~s---~~~~----~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~ 513 (864)
...+. ..+. ....+.....++|||||-.....++...+.+-.|..+..
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------------------------- 206 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------------------------- 206 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-------------------------
T ss_pred CcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-------------------------
Confidence 65431 1122 233344567899999995433333333332211100000
Q ss_pred HHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
...-|.....++
T Consensus 207 -----------~~~r~~l~~~v~--------------------------------------------------------- 218 (523)
T 1oyw_A 207 -----------SFDRPNIRYMLM--------------------------------------------------------- 218 (523)
T ss_dssp -----------CCCCTTEEEEEE---------------------------------------------------------
T ss_pred -----------CCCCCceEEEEE---------------------------------------------------------
Confidence 000011111110
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~ 673 (864)
....++..|.+++... .+.++|||++.....+.+.+.|...|+++..++|+++..+|+++++.|.++
T Consensus 219 -----------~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 285 (523)
T 1oyw_A 219 -----------EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD 285 (523)
T ss_dssp -----------ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -----------eCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 0122333444444432 578999999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 674 ~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
... +|++|.++|+|||++.++.||++++|+|+..+.|++||++|.|+...+.+
T Consensus 286 ~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 286 DLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp SCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 543 79999999999999999999999999999999999999999998765544
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=7.4e-26 Score=265.28 Aligned_cols=311 Identities=16% Similarity=0.146 Sum_probs=209.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
..++|+|.+++..+ ..++++++..+||+|||+..+..+ +. ..+.+|||+|. +++.||.+.+..+ ++.+.
T Consensus 43 ~~~rp~Q~~~i~~i----l~g~d~lv~~pTGsGKTl~~~lpa--l~--~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~ 112 (591)
T 2v1x_A 43 EKFRPLQLETINVT----MAGKEVFLVMPTGGGKSLCYQLPA--LC--SDGFTLVICPLISLMEDQLMVLKQL--GISAT 112 (591)
T ss_dssp CSCCTTHHHHHHHH----HTTCCEEEECCTTSCTTHHHHHHH--HT--SSSEEEEECSCHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEECCCChHHHHHHHHH--HH--cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEE
Confidence 36899999999877 457889999999999998654333 22 24589999995 7779999999998 56777
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhc---ccc----cCCcceeEEEec
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SAS----LKPIKWQCMIVD 435 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~---~~~----l~~~~w~~vIvD 435 (864)
.+.|............. ........+|+++|++.+... ... +....+.+||||
T Consensus 113 ~l~~~~~~~~~~~~~~~--------------------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAE--------------------MVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp ECCSSCCHHHHHHHHHH--------------------HHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHH--------------------hhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 77776543322111100 000124678999999988532 111 123368999999
Q ss_pred ccccccCcc-------cHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHH
Q 002937 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (864)
Q Consensus 436 EaH~lkn~~-------s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L 508 (864)
|||.+...+ ..+......+....+++|||||-.....++...+..-.+..+..
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-------------------- 232 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-------------------- 232 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC--------------------
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec--------------------
Confidence 999975432 12222233345567899999994322222222221110000000
Q ss_pred HHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCC
Q 002937 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (864)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~ 588 (864)
....|.....+....
T Consensus 233 ----------------~~~r~nl~~~v~~~~------------------------------------------------- 247 (591)
T 2v1x_A 233 ----------------SFNRPNLYYEVRQKP------------------------------------------------- 247 (591)
T ss_dssp ----------------CCCCTTEEEEEEECC-------------------------------------------------
T ss_pred ----------------CCCCcccEEEEEeCC-------------------------------------------------
Confidence 000111111111100
Q ss_pred CCCCccCchHHHHHhhhcccHHHHHHHHHHHHHH--cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHH
Q 002937 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~--~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~ 666 (864)
+.+...+..++..+.. .+.++|||+......+.+.+.|...|+.+..++|+++..+|.++
T Consensus 248 ------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 248 ------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp ------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHH
Confidence 0111122222222221 47899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
++.|..+... +|++|.++|+|||++.++.||+|++++++..+.|++||++|.|+...+.++
T Consensus 310 ~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 310 HRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999876544 799999999999999999999999999999999999999999986655544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=1.4e-25 Score=264.86 Aligned_cols=325 Identities=15% Similarity=0.205 Sum_probs=208.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-----CCceEEEecc-ccHHHHHHHHHHHc-
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----ISPHLVVAPL-STLRNWEREFATWA- 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~-----~~~~LIV~P~-sll~qW~~E~~~~~- 356 (864)
.|+|+|.+++..+.. ..++++|+..+||+|||++++..+ ..+.... ...+|||+|. .+..||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999977631 257789999999999999865444 4443322 2378999995 67789999999874
Q ss_pred -----CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc---cCCcc
Q 002937 357 -----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIK 428 (864)
Q Consensus 357 -----p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~---l~~~~ 428 (864)
+...+....|............ ....+|+|+|++.+...... ...-.
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~-------------------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMN-------------------------KLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH-------------------------HHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred hcccccceEEEEEECCccHHHHHHHHh-------------------------cCCCCEEEECHHHHHHHHHhcccccccc
Confidence 4566777777655444333220 12568999999998643221 12234
Q ss_pred eeEEEecccccccCcc--cHHHHHHHhc---c-----cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhc
Q 002937 429 WQCMIVDEGHRLKNKD--SKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (864)
Q Consensus 429 w~~vIvDEaH~lkn~~--s~~~~~l~~l---~-----~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~ 498 (864)
+++||+||||++...+ ......+..+ . ....+++|||+-. .+.++. ..
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~---~~------------------ 233 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLA---NN------------------ 233 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHT---TT------------------
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHHH---HH------------------
Confidence 6899999999987543 2222222222 1 3357999999731 111111 00
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 002937 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (864)
Q Consensus 499 ~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk 578 (864)
.+.......+... .. ...... .
T Consensus 234 ----------------------------~l~~~~~~~~~~~-~~-------------------~~~~~~----------~ 255 (579)
T 3sqw_A 234 ----------------------------IMNKKECLFLDTV-DK-------------------NEPEAH----------E 255 (579)
T ss_dssp ----------------------------TCCSSEEEEEESS-CS-------------------SSCSSC----------T
T ss_pred ----------------------------HcCCCceEEEeec-Cc-------------------cccccc----------c
Confidence 0111111111000 00 000000 0
Q ss_pred HhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhC---CCcEEE
Q 002937 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQYER 653 (864)
Q Consensus 579 ~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~---g~~~~~ 653 (864)
...+.+.... . ....+...+..++..+. ..+.++|||+.....++.+.+.|... |+++..
T Consensus 256 ~i~~~~~~~~------~---------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~ 320 (579)
T 3sqw_A 256 RIDQSVVISE------K---------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 320 (579)
T ss_dssp TEEEEEEEES------S---------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred ccceEEEEec------c---------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEE
Confidence 0000000000 0 00111222233333333 34779999999999999999999876 999999
Q ss_pred EeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEE
Q 002937 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (864)
Q Consensus 654 i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 733 (864)
++|.++..+|.++++.|.++.. .+|++|.++++|||++.+++||++|+++++..+.|++||++|.|+...+. .|+
T Consensus 321 ~hg~~~~~~R~~~~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~ 395 (579)
T 3sqw_A 321 FHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV--LFI 395 (579)
T ss_dssp ESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE--EEE
T ss_pred ecCCCCHHHHHHHHHHhhcCCC---eEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEE--EEE
Confidence 9999999999999999987543 38999999999999999999999999999999999999999999765443 445
Q ss_pred eCC
Q 002937 734 TRG 736 (864)
Q Consensus 734 ~~~ 736 (864)
+..
T Consensus 396 ~~~ 398 (579)
T 3sqw_A 396 CKD 398 (579)
T ss_dssp EGG
T ss_pred ccc
Confidence 543
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=5.5e-25 Score=275.56 Aligned_cols=310 Identities=17% Similarity=0.205 Sum_probs=214.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc-cHHHHHHHHHHHcCC-
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ- 358 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s-ll~qW~~E~~~~~p~- 358 (864)
+.+++|+|.+++..+.....+++ ++|++.+||+|||.+++..+...... ..++||+||.. +..||.++|.+++++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-g~~vlvlvPt~~La~Q~~~~~~~~~~~~ 679 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-HKQVAVLVPTTLLAQQHYDNFRDRFANW 679 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHSTTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-CCeEEEEechHHHHHHHHHHHHHHhhcC
Confidence 35789999999998877666665 89999999999999987555444333 34899999975 668999999988864
Q ss_pred -CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccc
Q 002937 359 -MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (864)
Q Consensus 359 -~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEa 437 (864)
.++..++|...........+ .......+|+|+|++.+... +.-..+++|||||+
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~----------------------~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILA----------------------EVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEE 734 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHH----------------------HHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESG
T ss_pred CCeEEEEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHhCC---ccccccceEEEech
Confidence 56677766433322111100 00123578999999988653 23346899999999
Q ss_pred ccccCcccHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHH
Q 002937 438 HRLKNKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (864)
Q Consensus 438 H~lkn~~s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~ 516 (864)
|++. ......+..+.. .+.++|||||..+.+......+. ++
T Consensus 735 H~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~--~~--------------------------------- 776 (1151)
T 2eyq_A 735 HRFG---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR--DL--------------------------------- 776 (1151)
T ss_dssp GGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTS--EE---------------------------------
T ss_pred HhcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCC--Cc---------------------------------
Confidence 9974 344455555544 46899999997543221111000 00
Q ss_pred HHHHHhhHhhcCCCcEE---EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCc
Q 002937 517 LRRVKKDVMKELPPKKE---LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (864)
Q Consensus 517 lrr~k~dv~~~lp~~~~---~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~ 593 (864)
.+. ..|+... .......
T Consensus 777 ------~~i-~~~~~~r~~i~~~~~~~----------------------------------------------------- 796 (1151)
T 2eyq_A 777 ------SII-ATPPARRLAVKTFVREY----------------------------------------------------- 796 (1151)
T ss_dssp ------EEC-CCCCCBCBCEEEEEEEC-----------------------------------------------------
T ss_pred ------eEE-ecCCCCccccEEEEecC-----------------------------------------------------
Confidence 000 1111100 0000111
Q ss_pred cCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC--CCcEEEEeccCCHHHHHHHHHHhc
Q 002937 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFN 671 (864)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~Fn 671 (864)
.+......++..+ ..|.+++|||+.+..++.+.+.|... ++++..++|.++..+|++++++|.
T Consensus 797 --------------~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~ 861 (1151)
T 2eyq_A 797 --------------DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 861 (1151)
T ss_dssp --------------CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 1111222233333 35789999999999999999999876 889999999999999999999998
Q ss_pred CCCCCceEEEeeccccccCcCCCCCCEEEEeCC-CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDS-DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 672 ~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~-~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
++... +|++|.++++|||++.+++||++++ .|++..+.|++||++|.|+.. .+|.++..+
T Consensus 862 ~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 862 HQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp TTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred cCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 75443 7999999999999999999999999 589999999999999998654 445555543
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=4e-25 Score=260.54 Aligned_cols=334 Identities=15% Similarity=0.187 Sum_probs=210.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-----CCceEEEecc-ccHHHHHHHHHHHc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----ISPHLVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~-----~~~~LIV~P~-sll~qW~~E~~~~~ 356 (864)
..|+|+|.+++..+.. ..++++|+..+||+|||++++..+ ..+.... ..++|||+|. .+..||.+++.++.
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3699999999977631 256789999999999999865444 4443332 2378999995 67789999998863
Q ss_pred ------CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc---cCCc
Q 002937 357 ------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPI 427 (864)
Q Consensus 357 ------p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~---l~~~ 427 (864)
+...+....|............ ....+|+|+|++.+...... ...-
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKMN-------------------------KLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHHH-------------------------HHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred hhccccCceeEEEEECCcCHHHHHHHHh-------------------------cCCCCEEEECcHHHHHHHHhccccccc
Confidence 3456777777655444332210 12568999999998643221 1122
Q ss_pred ceeEEEecccccccCcc--cHHHHHHHhc---c-----cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHh
Q 002937 428 KWQCMIVDEGHRLKNKD--SKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK 497 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~--s~~~~~l~~l---~-----~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~ 497 (864)
.+++||+||||++.... ......+..+ . ....+++|||+-. .+.++. ..+...... .
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~---~~~~~~~~~---~------ 292 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLA---NNIMNKKEC---L------ 292 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHT---TTTCCSSEE---E------
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHH---HHhcCCCce---E------
Confidence 46899999999986543 2222222222 1 2357999999831 111111 000000000 0
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCC-cEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 002937 498 DINQEEQISRLHRMLAPHLLRRVKKDVMKELPP-KKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (864)
Q Consensus 498 ~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~-~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~l 576 (864)
... ........... .....+..+-.
T Consensus 293 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 318 (563)
T 3i5x_A 293 FLD-------------------TVDKNEPEAHERIDQSVVISEKF----------------------------------- 318 (563)
T ss_dssp EEE-------------------SSCSSSCSSCTTEEEEEEEESST-----------------------------------
T ss_pred EEe-------------------ccCCCCccccccCceEEEECchh-----------------------------------
Confidence 000 00000000000 00111111100
Q ss_pred HHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHH--HcCceEEEEeccHHHHHHHHHHHhhC---CCcE
Q 002937 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQY 651 (864)
Q Consensus 577 rk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFsq~~~~ld~L~~~L~~~---g~~~ 651 (864)
.......+..+...+. ..+.++|||++.....+.+.+.|... |+++
T Consensus 319 -----------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v 369 (563)
T 3i5x_A 319 -----------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPI 369 (563)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCE
T ss_pred -----------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceE
Confidence 0001111222222222 35779999999999999999999876 9999
Q ss_pred EEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEE
Q 002937 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (864)
Q Consensus 652 ~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 731 (864)
..++|+++..+|..+++.|.++.. .+|++|.++++|||++.+++||+||+++++..+.|++||++|.|+...+ +.
T Consensus 370 ~~~h~~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~ 444 (563)
T 3i5x_A 370 LEFHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VL 444 (563)
T ss_dssp EEESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EE
T ss_pred EEecCCCCHHHHHHHHHHHhcCCC---CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EE
Confidence 999999999999999999987543 4899999999999999999999999999999999999999999965443 44
Q ss_pred EEeCCCHHHHHHHHHH
Q 002937 732 LITRGSIEERMMQMTK 747 (864)
Q Consensus 732 lv~~~TiEe~i~~~~~ 747 (864)
|++.. |...++...
T Consensus 445 ~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 445 FICKD--ELPFVRELE 458 (563)
T ss_dssp EEEGG--GHHHHHHHH
T ss_pred EEchh--HHHHHHHHH
Confidence 55554 344444443
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.2e-24 Score=263.65 Aligned_cols=358 Identities=14% Similarity=0.140 Sum_probs=220.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeE
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~ 361 (864)
+.+|+|||.+++..+ ..+.++|++.+||+|||+++...+...... .+++||++|. .+..||.++|..+++ ++
T Consensus 84 ~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~-g~rvL~l~PtkaLa~Q~~~~l~~~~~--~v 156 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DV 156 (1010)
T ss_dssp SSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHS--CE
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc-CCeEEEECChHHHHHHHHHHHHHHhC--CE
Confidence 357999999999887 457889999999999999886555544433 3589999996 777999999999886 56
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDEaH~ 439 (864)
..++|+... ....+|+|+|++.+..... ......+++||+||+|+
T Consensus 157 glltGd~~~---------------------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~ 203 (1010)
T 2xgj_A 157 GLMTGDITI---------------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 203 (1010)
T ss_dssp EEECSSCEE---------------------------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEEeCCCcc---------------------------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh
Confidence 666665321 1246899999998864321 12224688999999999
Q ss_pred ccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHH
Q 002937 440 LKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (864)
Q Consensus 440 lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~ 516 (864)
+.+.. ......+..+. ....++||||+- +..++...+..+...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~--n~~e~a~~l~~~~~~-------------------------------- 249 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIP--NAMEFAEWICKIHSQ-------------------------------- 249 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHHHHHTS--------------------------------
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCC--CHHHHHHHHHhhcCC--------------------------------
Confidence 97653 23333444444 456799999952 222222211100000
Q ss_pred HHHHHhhHh-hcCC-CcEEEEEEec-------CCH---HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhCcc
Q 002937 517 LRRVKKDVM-KELP-PKKELILRVE-------LSS---KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK-LCCHP 583 (864)
Q Consensus 517 lrr~k~dv~-~~lp-~~~~~~v~v~-------ls~---~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk-~~~hp 583 (864)
...-+. ..-| +...+++... ... .....|...+. .+.. ....|
T Consensus 250 ---~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~~ 305 (1010)
T 2xgj_A 250 ---PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA---------------------SISNQIGDDP 305 (1010)
T ss_dssp ---CEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH---------------------TCC-------
T ss_pred ---CeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH---------------------HHhhhhcccc
Confidence 000000 0111 1112221111 000 00000110000 0000 00000
Q ss_pred cccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcC-ceEEEEeccHHHHHHHHHHHhhCCCc------------
Q 002937 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQ------------ 650 (864)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g-~kvlIFsq~~~~ld~L~~~L~~~g~~------------ 650 (864)
. ...+..... ...+.-.........+..++..+...+ .++|||+......+.+...|...|+.
T Consensus 306 ~---~~~~~g~~~-~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 381 (1010)
T 2xgj_A 306 N---STDSRGKKG-QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 381 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHH
T ss_pred c---ccccccccc-cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 0 000000000 000000000000223445555555444 59999999999999999988765542
Q ss_pred ---------------------------EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE--
Q 002937 651 ---------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-- 701 (864)
Q Consensus 651 ---------------------------~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~-- 701 (864)
+..++|+++..+|+.+++.|+++.-. +|++|.++++|||++++++||.
T Consensus 382 ~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 382 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCC
Confidence 77899999999999999999875443 7999999999999999999999
Q ss_pred --eCC----CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHH
Q 002937 702 --YDS----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (864)
Q Consensus 702 --~d~----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~ 745 (864)
||. +|+|..+.|++||++|.|+.....++.+++.+.-+..+.+.
T Consensus 459 ~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 89999999999999999998889999999876434344333
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.8e-26 Score=264.96 Aligned_cols=311 Identities=17% Similarity=0.215 Sum_probs=185.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C-CCceEEEecc-ccHHHHHHHHHHHcCCCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~-~~~~LIV~P~-sll~qW~~E~~~~~p~~~~ 361 (864)
.++|||.+++..+... .++++|+..+||+|||++++..+...+.. . .+++||++|. .+..||.+++.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999776322 24899999999999999976655554433 2 3489999996 5779999999999865443
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEaH~ 439 (864)
....+...... .......+|+|+|++.+.... ..+....+++||+||||+
T Consensus 219 ~~~~~~~~~~~----------------------------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 219 KTAFGIKDSVP----------------------------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp CEEC--------------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred eEEEEeCCccc----------------------------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 33332221110 001235789999999986532 223344689999999999
Q ss_pred ccCc---ccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHH
Q 002937 440 LKNK---DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (864)
Q Consensus 440 lkn~---~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~ 515 (864)
+... .......+..+. ....++|||||- +...++.. .+
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~------------------~~------------------- 312 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS-ERVEKYAE------------------RF------------------- 312 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCS-THHHHHHH------------------HH-------------------
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC-HHHHHHHH------------------Hh-------------------
Confidence 8652 223333333344 345699999983 11111111 00
Q ss_pred HHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccC
Q 002937 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (864)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~ 595 (864)
++.... +.+.-..... ....+.+..
T Consensus 313 ------------~~~~~~--i~~~~~~~~~--------------------------------~~~~~~~~~--------- 337 (508)
T 3fho_A 313 ------------APNANE--IRLKTEELSV--------------------------------EGIKQLYMD--------- 337 (508)
T ss_dssp ------------STTCEE--ECCCCCC------------------------------------CCCCEEEE---------
T ss_pred ------------cCCCeE--EEeccccCCc--------------------------------ccceEEEEE---------
Confidence 000000 0000000000 000000000
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCC
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~ 675 (864)
......|...+.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++..
T Consensus 338 -------~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~ 408 (508)
T 3fho_A 338 -------CQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS 408 (508)
T ss_dssp -------C--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSC
T ss_pred -------CCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 001123444455555443 46799999999999999999999999999999999999999999999987654
Q ss_pred CceEEEeeccccccCcCCCCCCEEEEeCCC------CCcchhhHHHHHHHHhCCCCcEEEE
Q 002937 676 SRFCFLLSTRAGGLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIF 730 (864)
Q Consensus 676 ~~~v~Llst~a~~~GinL~~a~~VI~~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy 730 (864)
. +|++|.++++|||++.+++||++|++ +++..+.|++||++|.|+...+.++
T Consensus 409 ~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 409 K---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp C---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred e---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 4 79999999999999999999999999 7899999999999999976555443
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=9.9e-25 Score=251.86 Aligned_cols=309 Identities=15% Similarity=0.231 Sum_probs=103.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CCC-CceEEEecc-ccHHHHHHHHHHHc---C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~~~-~~~LIV~P~-sll~qW~~E~~~~~---p 357 (864)
..++|+|..++..+.. ..++++|+..+||+|||++++..+..... ... ..+||++|. .+..||.+.+.++. +
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4699999999987732 13488999999999999986554443333 222 279999996 55578877776654 5
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEEEe
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIV 434 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~vIv 434 (864)
.+.+....+..... .......+|+|+|++.+..... .+..-.+++||+
T Consensus 191 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 191 ELKLAYAVRGNKLE-----------------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp TCCEEEESTTCCCC-----------------------------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CceEEEEeCCcccc-----------------------------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 66666655543211 0112346899999999965432 333347889999
Q ss_pred cccccccCccc---HHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 002937 435 DEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (864)
Q Consensus 435 DEaH~lkn~~s---~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~ 510 (864)
||||++..... .....+..+. ....+++||||-. +++.+..
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------- 286 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQ------------------------------- 286 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHH-------------------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHH-------------------------------
Confidence 99999864222 2222223333 3457999999831 1111000
Q ss_pred HHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCC
Q 002937 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (864)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~ 590 (864)
..+|..... .+. ...... . .+.+ .++.
T Consensus 287 ---------------~~~~~~~~i--~~~--~~~~~~-~-------------------------~~~~----~~~~---- 313 (479)
T 3fmp_B 287 ---------------KVVPDPNVI--KLK--REEETL-D-------------------------TIKQ----YYVL---- 313 (479)
T ss_dssp ---------------HHSSSEEEE--EEC---------------------------------------------------
T ss_pred ---------------HHcCCCeEE--ecc--ccccCc-C-------------------------CceE----EEEE----
Confidence 012222111 111 100000 0 0000 0000
Q ss_pred CCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHh
Q 002937 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 670 (864)
.-....|+..|..++... .+.++||||+.....+.+...|...|+.+..++|.++..+|..+++.|
T Consensus 314 ------------~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 314 ------------CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 000123444444444432 356899999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCc------chhhHHHHHHHHhCCCCcEE
Q 002937 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 671 n~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp------~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
.++.. .+|++|.++++|||++.+++||+||+++++ ..+.|++||++|.|+...+.
T Consensus 380 ~~g~~---~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 380 REGKE---KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred HcCCC---cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 87544 379999999999999999999999999876 68999999999999765443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.2e-24 Score=260.30 Aligned_cols=307 Identities=16% Similarity=0.233 Sum_probs=203.6
Q ss_pred CCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~--~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
.+|+|+|.+++..+......+ .+.|+..+||+|||++++..+......+ ..+||++|. .+..||.+++.++++ +
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 379999999999887665544 4899999999999999876665544332 489999997 566899999999986 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH 438 (864)
+++..++|+..........+- -.....+|+|+|++.+... +.-.++++||+||+|
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSG----------------------LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQH 500 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHH----------------------HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCC
T ss_pred ceEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHhhh---hhccCCceEEecccc
Confidence 788888887654432111100 0113578999999988543 223467899999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 439 ~lkn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
++.... ...+... ...+.++|||||....+...+ + .+.
T Consensus 501 r~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~----~----------------g~~------------------ 539 (780)
T 1gm5_A 501 RFGVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF----Y----------------GDL------------------ 539 (780)
T ss_dssp CC--------CCCCSSSSCCCEEEEESSCCCHHHHHHH----T----------------CCS------------------
T ss_pred hhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH----h----------------CCc------------------
Confidence 974221 1111111 246789999999643221110 0 000
Q ss_pred HHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCch
Q 002937 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (864)
Q Consensus 518 rr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~~ 597 (864)
...+...+|+....+...-.
T Consensus 540 ---~~s~i~~~p~~r~~i~~~~~--------------------------------------------------------- 559 (780)
T 1gm5_A 540 ---DVTVIDEMPPGRKEVQTMLV--------------------------------------------------------- 559 (780)
T ss_dssp ---SCEEECCCCSSCCCCEECCC---------------------------------------------------------
T ss_pred ---ceeeeeccCCCCcceEEEEe---------------------------------------------------------
Confidence 00011122221100000000
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccH--------HHHHHHHHHHhh---CCCcEEEEeccCCHHHHHHH
Q 002937 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF---KKWQYERIDGKVGGAERQIR 666 (864)
Q Consensus 598 ~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~--------~~ld~L~~~L~~---~g~~~~~i~G~~~~~~R~~~ 666 (864)
...+...+.+.+......|++++|||+.. ..++.+.+.|.. .++.+..++|+++..+|+++
T Consensus 560 --------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 560 --------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp --------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred --------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 01112222333444445688899998754 345667777876 57899999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCC-CCcchhhHHHHHHHHhCCCCcEE
Q 002937 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (864)
Q Consensus 667 i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~ 728 (864)
++.|.++... +|++|.++++|||++.+++||++|++ |+...+.|+.||++|.|+...+.
T Consensus 632 ~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~i 691 (780)
T 1gm5_A 632 MLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 691 (780)
T ss_dssp HHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred HHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEE
Confidence 9999875544 79999999999999999999999998 47889999999999999776554
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.3e-23 Score=253.86 Aligned_cols=360 Identities=15% Similarity=0.167 Sum_probs=219.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~ 362 (864)
.+|+|+|.+++..+ ..+.++|++.+||+|||+++...+...... .+++||++|. .+..||.++|..++. .+.
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~~--~Vg 255 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DVG 255 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTS--SEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHHHHHHHHHhC--Ccc
Confidence 47999999999877 678999999999999999986666555433 3589999995 666899999999886 555
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~l 440 (864)
.++|.... ....+|+|+|++.+...... ..--.+.+|||||||++
T Consensus 256 lltGd~~~---------------------------------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 256 LMTGDITI---------------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp EECSSCBC---------------------------------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred EEeCcccc---------------------------------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 56665321 13578999999988653221 11226789999999999
Q ss_pred cCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 441 KNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 441 kn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
.... ......+..+. ....++||||+ .|. .++...+..+.....
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATi-pn~-~e~a~~l~~~~~~~~------------------------------- 349 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATI-PNA-MEFAEWICKIHSQPC------------------------------- 349 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSC-SSC-HHHHHHHHHHTCSCE-------------------------------
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCC-CCH-HHHHHHHHhhcCCCe-------------------------------
Confidence 7642 22333444444 34679999994 333 232222221111000
Q ss_pred HHHHhhHh-hcCC-CcEEEEEE---------ec-CCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc
Q 002937 518 RRVKKDVM-KELP-PKKELILR---------VE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (864)
Q Consensus 518 rr~k~dv~-~~lp-~~~~~~v~---------v~-ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l 585 (864)
..+. ..-| +...+.+. +. ........|...+.. +....... +..
T Consensus 350 ----~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~----l~~~~~~~----------------~~~ 405 (1108)
T 3l9o_A 350 ----HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS----ISNQIGDD----------------PNS 405 (1108)
T ss_dssp ----EEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT----C--------------------------
T ss_pred ----EEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHH----HHhhhccc----------------ccc
Confidence 0000 0011 11111111 10 110011111111100 00000000 000
Q ss_pred cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHc-CceEEEEeccHHHHHHHHHHHhhCCCc--------------
Q 002937 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQ-------------- 650 (864)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFsq~~~~ld~L~~~L~~~g~~-------------- 650 (864)
..... . .................+.+++..+... +.++|||+......+.+...|...|+.
T Consensus 406 ~~~~~---~-~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~ 481 (1108)
T 3l9o_A 406 TDSRG---K-KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNN 481 (1108)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGG
T ss_pred ccccc---c-cccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 00000 0 0000000000000133444555555444 469999999999999999888654333
Q ss_pred -------------------------EEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCC
Q 002937 651 -------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (864)
Q Consensus 651 -------------------------~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~ 705 (864)
+..++|++++.+|..+++.|.++... +|++|.++++|||++++++||.++.+
T Consensus 482 ~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~ 558 (1108)
T 3l9o_A 482 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRK 558 (1108)
T ss_dssp SCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEE
T ss_pred HHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcc
Confidence 68899999999999999999875544 79999999999999999999999888
Q ss_pred CCcch--------hhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 002937 706 WNPHA--------DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (864)
Q Consensus 706 wnp~~--------~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~ 747 (864)
|++.. +.|+.||++|.|+.....+|.++..+..+..+...+.
T Consensus 559 ~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 559 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp ESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred cCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 87765 9999999999999999999999887755444444443
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=6e-22 Score=244.54 Aligned_cols=380 Identities=16% Similarity=0.103 Sum_probs=225.3
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-cccHHHHHHHHHHHc
Q 002937 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA 356 (864)
Q Consensus 278 p~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P-~sll~qW~~E~~~~~ 356 (864)
+....+.+|+|+|.+++..+ ..+++++++.+||+|||++++..+..+... .+.+||++| .++..||.+++..++
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~-g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred HHHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 33334468999999999776 567899999999999998765555544433 347999999 567799999999988
Q ss_pred CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEe
Q 002937 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (864)
Q Consensus 357 p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIv 434 (864)
++.++..++|.... ....+|+|+|++.+..... ......+++|||
T Consensus 107 ~~~~v~~l~G~~~~---------------------------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvVi 153 (997)
T 4a4z_A 107 DDVNIGLITGDVQI---------------------------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIF 153 (997)
T ss_dssp --CCEEEECSSCEE---------------------------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEE
T ss_pred CCCeEEEEeCCCcc---------------------------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEE
Confidence 88888888876421 1346899999998865322 112236889999
Q ss_pred cccccccCc--ccHHHHHHHhccc-ccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 002937 435 DEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (864)
Q Consensus 435 DEaH~lkn~--~s~~~~~l~~l~~-~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~ 511 (864)
||||++.+. .......+..+.. ...++|||||- +..+ |.+++..
T Consensus 154 DEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~--n~~e------------------f~~~l~~------------- 200 (997)
T 4a4z_A 154 DEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP--NTYE------------------FANWIGR------------- 200 (997)
T ss_dssp CCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT--THHH------------------HHHHHHH-------------
T ss_pred ECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC--ChHH------------------HHHHHhc-------------
Confidence 999998653 3344455555553 46699999972 2222 2222210
Q ss_pred HhHHHHHHHHhhH----hhcCCCcEEEEEEe--------c-CCHHHHHHHHHHHHHHHHHHHhcCCCcc-----------
Q 002937 512 LAPHLLRRVKKDV----MKELPPKKELILRV--------E-LSSKQKEYYKAILTRNYQILTRRGGAQI----------- 567 (864)
Q Consensus 512 l~~~~lrr~k~dv----~~~lp~~~~~~v~v--------~-ls~~q~~~Y~~i~~~~~~~l~~~~~~~~----------- 567 (864)
.....+ ....|...++.+.. . ........|..... .+........
T Consensus 201 -------~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 201 -------TKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE----ILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp -------HHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHH----HHC------------------
T ss_pred -------ccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHH----Hhhcccccccccccccccccc
Confidence 000000 00111111111111 0 00001111111110 0000000000
Q ss_pred ----hHHHHHHHH--------HHHhCcccccCCCCCCccCchHH-HHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccH
Q 002937 568 ----SLINVVMEL--------RKLCCHPYMLEGVEPDIEDTNES-FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ 634 (864)
Q Consensus 568 ----~~~~~~~~l--------rk~~~hp~l~~~~~~~~~~~~~~-~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~ 634 (864)
.......+- +.. ..+................ .........++..+.+++.. ..+.++|||+...
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr 346 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRG-GANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSK 346 (997)
T ss_dssp ------------------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCH
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCH
Confidence 000000000 000 0000000000000000000 00001123344455555543 2357999999999
Q ss_pred HHHHHHHHHHhhCCC---------------------------------------cEEEEeccCCHHHHHHHHHHhcCCCC
Q 002937 635 HMLDLLEDYLTFKKW---------------------------------------QYERIDGKVGGAERQIRIDRFNAKNS 675 (864)
Q Consensus 635 ~~ld~L~~~L~~~g~---------------------------------------~~~~i~G~~~~~~R~~~i~~Fn~~~~ 675 (864)
...+.+...|...|+ .+..++|+++..+|+.+++.|..+..
T Consensus 347 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~ 426 (997)
T 4a4z_A 347 KRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFI 426 (997)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 999999999977666 47899999999999999999987654
Q ss_pred CceEEEeeccccccCcCCCCCCEEEEeCCCC---------CcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHH
Q 002937 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDW---------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (864)
Q Consensus 676 ~~~v~Llst~a~~~GinL~~a~~VI~~d~~w---------np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~ 746 (864)
. +|++|.++++|||+++ .+||+++.+. ++..+.|+.||++|.|+.....++.+...+..+..++...
T Consensus 427 k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 427 K---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp S---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred c---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 4 7999999999999999 7777766555 8999999999999999999988888887666665555443
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.88 E-value=1.5e-21 Score=236.34 Aligned_cols=325 Identities=16% Similarity=0.154 Sum_probs=208.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCCCCceEEEeccc-cHHHHHHHHHHHcC-CCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPLS-TLRNWEREFATWAP-QMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~~~~~~LIV~P~s-ll~qW~~E~~~~~p-~~~~ 361 (864)
.|+|+|.+++..+ ...+.++|++.+||+|||+++...+. .+... .+++|+++|.. +..||.++++++.+ +.++
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~r~La~q~~~~~~~~~~~g~~v 105 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPLRALTNEKYLTFKDWELIGFKV 105 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSCHHHHHHHHHHHGGGGGGTCCE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEE
Confidence 6999999998752 25688999999999999999855544 44323 35999999965 77899999966553 5677
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~ 439 (864)
..++|...... ......+|+|+|++.+...... ..--.+++||+||+|.
T Consensus 106 ~~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 106 AMTSGDYDTDD-----------------------------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp EECCSCSSSCC-----------------------------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EEEeCCCCCch-----------------------------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 77777532110 0112578999999988553221 1123678999999999
Q ss_pred ccCc--ccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHHH
Q 002937 440 LKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (864)
Q Consensus 440 lkn~--~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~l 517 (864)
+.+. ...+...+..+.....++|||||- +..++...+. ...+.
T Consensus 157 l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l~---~~~~~------------------------------ 201 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKWLG---AEPVA------------------------------ 201 (715)
T ss_dssp GGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHHHT---CEEEE------------------------------
T ss_pred cCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHhC---CCccC------------------------------
Confidence 8642 223333444555677899999983 2344333221 10000
Q ss_pred HHHHhhHhhcCC-CcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccCc
Q 002937 518 RRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (864)
Q Consensus 518 rr~k~dv~~~lp-~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~~ 596 (864)
...-| |............ ... ..+..+......
T Consensus 202 -------~~~r~~~l~~~~~~~~~~~----------------------~~~--------------~~~~~~~~~~~~--- 235 (715)
T 2va8_A 202 -------TNWRPVPLIEGVIYPERKK----------------------KEY--------------NVIFKDNTTKKV--- 235 (715)
T ss_dssp -------CCCCSSCEEEEEEEECSST----------------------TEE--------------EEEETTSCEEEE---
T ss_pred -------CCCCCCCceEEEEecCCcc----------------------cce--------------eeecCcchhhhc---
Confidence 00001 1111111100000 000 000000000000
Q ss_pred hHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCC----------------------------
Q 002937 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------- 648 (864)
Q Consensus 597 ~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g---------------------------- 648 (864)
.....++..+. .....++++|||+......+.+...|....
T Consensus 236 -------~~~~~~~~~~~----~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (715)
T 2va8_A 236 -------HGDDAIIAYTL----DSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEK 304 (715)
T ss_dssp -------ESSSHHHHHHH----HHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHH
T ss_pred -------ccchHHHHHHH----HHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccccc
Confidence 00122222333 333468899999999999988888886531
Q ss_pred --------CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eC-------CCCCcc
Q 002937 649 --------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-------SDWNPH 709 (864)
Q Consensus 649 --------~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d-------~~wnp~ 709 (864)
..+..++|+++..+|+.+.+.|.++.- .+|++|.+++.|||++++++||. || .++++.
T Consensus 305 ~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 305 ELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI---KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCS---CEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred HHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCC---eEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 248889999999999999999987543 37999999999999999999998 99 799999
Q ss_pred hhhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 710 ADLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 710 ~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
.+.|+.||++|.|+.++-.+|++++...
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999998888999987765
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.88 E-value=8.7e-22 Score=237.61 Aligned_cols=321 Identities=17% Similarity=0.160 Sum_probs=211.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc-cHHHHHHHHHHHcC-CCeEE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP-QMNVV 362 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s-ll~qW~~E~~~~~p-~~~~~ 362 (864)
+|+|+|.+++..+ ..++++|++.+||+|||+++...+...... .+++|+++|.. +..||.++++++.+ +.++.
T Consensus 25 ~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 6899999999875 568999999999999999985544433332 35899999965 77899999976654 57788
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccC--CcceeEEEecccccc
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK--PIKWQCMIVDEGHRL 440 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~--~~~w~~vIvDEaH~l 440 (864)
.++|+..... ......+|+|+|++.+......-. --.+++||+||+|.+
T Consensus 100 ~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 100 ISTGDYESRD-----------------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp EECSSCBCCS-----------------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred EEeCCCCcch-----------------------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 7777532110 012367899999998854322111 125789999999998
Q ss_pred cCc--ccHHHHHHHhc----ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhH
Q 002937 441 KNK--DSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (864)
Q Consensus 441 kn~--~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~ 514 (864)
... .......+..+ .....++||||+- +..++...+. ...+..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~~l~---~~~~~~-------------------------- 199 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAEWLD---ADYYVS-------------------------- 199 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHHHTT---CEEEEC--------------------------
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHHHhC---CCcccC--------------------------
Confidence 752 22222333333 2456799999973 2444433221 111000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCcc
Q 002937 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (864)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~ 594 (864)
..-|-.....+..... .+..+.....
T Consensus 200 -----------~~r~~~l~~~~~~~~~-----------------------------------------~~~~~~~~~~-- 225 (702)
T 2p6r_A 200 -----------DWRPVPLVEGVLCEGT-----------------------------------------LELFDGAFST-- 225 (702)
T ss_dssp -----------CCCSSCEEEEEECSSE-----------------------------------------EEEEETTEEE--
T ss_pred -----------CCCCccceEEEeeCCe-----------------------------------------eeccCcchhh--
Confidence 0001111111100000 0000000000
Q ss_pred CchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC---------------------------
Q 002937 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------------------------- 647 (864)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~--------------------------- 647 (864)
...-.+...+ ......++++|||++.....+.+...|...
T Consensus 226 ---------~~~~~~~~~~----~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 292 (702)
T 2p6r_A 226 ---------SRRVKFEELV----EECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLA 292 (702)
T ss_dssp ---------EEECCHHHHH----HHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHH
T ss_pred ---------hhhhhHHHHH----HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHH
Confidence 0000022222 233356889999999998888777777532
Q ss_pred ---CCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eC---CCCCcchhhHHHHH
Q 002937 648 ---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD---SDWNPHADLQAMAR 717 (864)
Q Consensus 648 ---g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d---~~wnp~~~~Qa~gR 717 (864)
+..+..++|+++..+|+.+.+.|.++.. .+|++|.+++.|||++++++||. || .++++..+.|+.||
T Consensus 293 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 293 ECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI---KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHTTCCEECTTSCHHHHHHHHHHHHTTSC---CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTT
T ss_pred HHHhcCeEEecCCCCHHHHHHHHHHHHCCCC---eEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhh
Confidence 2356779999999999999999987543 37999999999999999999998 77 68999999999999
Q ss_pred HHHhCCCCcEEEEEEEeCCCHHH
Q 002937 718 AHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 718 ~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
++|.|+.++..+|.+++....+.
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHH
T ss_pred cCCCCCCCCceEEEEecCccHHH
Confidence 99999999999999998876543
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=3.2e-22 Score=242.15 Aligned_cols=319 Identities=18% Similarity=0.141 Sum_probs=213.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC-CCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p-~~~~ 361 (864)
.|+|+|.+++..+ +..+.++|++.+||+|||+++ ++++..+... .+++|+++|. .+..||.+++.++.+ +.++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 6899999998751 245889999999999999998 4555454422 3589999995 777899999976653 6788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--cCCcceeEEEeccccc
Q 002937 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (864)
Q Consensus 362 ~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--l~~~~w~~vIvDEaH~ 439 (864)
..++|+..... ......+|+|+|++.+...... ..--++++||+||+|.
T Consensus 99 ~~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 99 AMATGDYDSKD-----------------------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp EEECSCSSCCC-----------------------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEecCCCCccc-----------------------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 88887532110 0113578999999988543221 1123678999999999
Q ss_pred ccCc--ccHHHHHHHhcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHHHHHHHHhHHH
Q 002937 440 LKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (864)
Q Consensus 440 lkn~--~s~~~~~l~~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~L~~~l~~~~ 516 (864)
+... ...+...+..+. ....++||||+- +..++...+. ...+
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~~l~---~~~~------------------------------ 194 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAEWLN---AELI------------------------------ 194 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHHHTT---EEEE------------------------------
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHHHhC---Cccc------------------------------
Confidence 8752 233333444444 456799999973 2344333221 1000
Q ss_pred HHHHHhhHhhcC-CCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccccCCCCCCccC
Q 002937 517 LRRVKKDVMKEL-PPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (864)
Q Consensus 517 lrr~k~dv~~~l-p~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l~~~~~~~~~~ 595 (864)
.... |-.....+..... .+..+... .
T Consensus 195 --------~~~~rp~~l~~~~~~~~~-----------------------------------------~~~~~~~~---~- 221 (720)
T 2zj8_A 195 --------VSDWRPVKLRRGVFYQGF-----------------------------------------VTWEDGSI---D- 221 (720)
T ss_dssp --------ECCCCSSEEEEEEEETTE-----------------------------------------EEETTSCE---E-
T ss_pred --------CCCCCCCcceEEEEeCCe-----------------------------------------eeccccch---h-
Confidence 0001 1111111111000 00000000 0
Q ss_pred chHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhC------------------C---------
Q 002937 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------K--------- 648 (864)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~------------------g--------- 648 (864)
....+...+.+ ....++++|||++.....+.+...|... +
T Consensus 222 ---------~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 222 ---------RFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp ---------ECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred ---------hhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHH
Confidence 01122222333 3356889999999999888877777532 1
Q ss_pred ------CcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eC----CCCCcchhhHH
Q 002937 649 ------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD----SDWNPHADLQA 714 (864)
Q Consensus 649 ------~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d----~~wnp~~~~Qa 714 (864)
..+..++|+++..+|+.+.+.|.++.- .+|++|.+++.|||+++.++||. || .++++..+.|+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr 365 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGII---KAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQM 365 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS---CEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC---eEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHH
Confidence 248899999999999999999987543 37999999999999999999998 77 58899999999
Q ss_pred HHHHHHhCCCCcEEEEEEEeCCCHHH
Q 002937 715 MARAHRLGQTNKVMIFRLITRGSIEE 740 (864)
Q Consensus 715 ~gR~~RiGQ~~~V~Vy~lv~~~TiEe 740 (864)
.||++|.|+.+.-.+|.+++....+.
T Consensus 366 ~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 366 LGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999999999999999887554
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=5.1e-21 Score=238.18 Aligned_cols=274 Identities=13% Similarity=0.175 Sum_probs=185.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc-CCCeEE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~-p~~~~~ 362 (864)
++.|+|.+++..+ ..++++|+..+||+|||+.++..+..... ....+||++|. .+..|+.+.+..+. .++++.
T Consensus 78 ~pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~~-~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 78 DLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIF 152 (1104)
T ss_dssp CCCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEE
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEE
Confidence 5789999999776 56789999999999999976666555543 33589999995 66689999999976 457889
Q ss_pred EEecChHH---HHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccc
Q 002937 363 MYVGTSQA---RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 363 ~~~g~~~~---r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~ 439 (864)
.++|.... ....... ....++|+|+|++.+......+....+++||+||||.
T Consensus 153 ~l~Gg~~~~er~~~~~~l-------------------------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSF-------------------------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp EECTTCCTTHHHHHHHHH-------------------------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHH
T ss_pred EEeCCCCHHHHHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCc
Confidence 99887654 2211111 1124789999999997655545555788999999998
Q ss_pred ccCcc-------------cH-HHHHHHhc------------ccccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHH
Q 002937 440 LKNKD-------------SK-LFSSLKQY------------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (864)
Q Consensus 440 lkn~~-------------s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~ 493 (864)
+.... .. ....+..+ .....+++||||....+.+.+. -.++....
T Consensus 208 l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~i~v-------- 278 (1104)
T 4ddu_A 208 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLNFTV-------- 278 (1104)
T ss_dssp HTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTCCCC--------
T ss_pred cccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcceeEEe--------
Confidence 64321 12 22333333 2346799999976554332110 00000000
Q ss_pred HHHhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 002937 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVV 573 (864)
Q Consensus 494 ~~~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~ 573 (864)
. ......+......+.
T Consensus 279 ---------------------------~-~~~~~~~~i~~~~~~------------------------------------ 294 (1104)
T 4ddu_A 279 ---------------------------G-RLVSVARNITHVRIS------------------------------------ 294 (1104)
T ss_dssp ---------------------------C-BCCCCCCCEEEEEES------------------------------------
T ss_pred ---------------------------c-cCCCCcCCceeEEEe------------------------------------
Confidence 0 000000111111111
Q ss_pred HHHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEE-
Q 002937 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE- 652 (864)
Q Consensus 574 ~~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~- 652 (864)
..|...|.+++.. .+.++|||++.....+.|...|...|+++.
T Consensus 295 ---------------------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~ 338 (1104)
T 4ddu_A 295 ---------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGE 338 (1104)
T ss_dssp ---------------------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEE
T ss_pred ---------------------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeee
Confidence 1233344455544 357999999999999999999999999998
Q ss_pred EEeccCCHHHHHHHHHHhcCCCCCceEEEee----ccccccCcCCCC-CCEEEEeCCCC
Q 002937 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (864)
Q Consensus 653 ~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----t~a~~~GinL~~-a~~VI~~d~~w 706 (864)
.++| +|.+ ++.|.++... +|++ |.++++|||++. +++||+||+|-
T Consensus 339 ~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 339 TWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 8888 2555 9999886655 6888 999999999999 99999999997
No 44
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.87 E-value=1.4e-23 Score=203.05 Aligned_cols=138 Identities=23% Similarity=0.427 Sum_probs=98.6
Q ss_pred CcccccccccccccCccCC---CCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 002937 99 LNDIDKILDCEMRPTVAGD---SDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (864)
Q Consensus 99 ~~~~~kil~~r~~p~~~~~---~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (864)
...|++||+.|........ ....+.........||||||+|+||+||||+|+++|.. +++++ +++||.++..
T Consensus 12 ~~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~----~~glk-Kl~nf~kk~~ 86 (177)
T 2h1e_A 12 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGLK-RLDNYCKQFI 86 (177)
T ss_dssp CCCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCS----CTTHH-HHHHHHHHHT
T ss_pred CCcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhh----chHHH-HHHHHHHHhh
Confidence 4568999999764322110 00011111223468999999999999999999999962 57764 8899988764
Q ss_pred c--------CCCCchhh----------hhcCCccchhhhHhhhhc-----CCccceeeeeeccccccccccccCCCCC-c
Q 002937 176 S--------NNNAEEDF----------VAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-A 231 (864)
Q Consensus 176 ~--------~~~~~~~~----------~~~~~~~~~verIi~~~~-----~~~~~~ylVKW~~l~y~~~tWe~~~~~~-~ 231 (864)
. .....++. ..+.++|++|||||+++. .++..+|||||+||||++||||.++.+. .
T Consensus 87 ~~e~~~~~~~~~~~ed~E~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~ 166 (177)
T 2h1e_A 87 IEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 166 (177)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHH
T ss_pred hhhhhhhcccCCChHHHHHhhhhhhhhhhcccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhh
Confidence 2 12222222 124579999999999994 5788999999999999999999988764 3
Q ss_pred cHHHHHHHHH
Q 002937 232 FQPEIERFIK 241 (864)
Q Consensus 232 ~~~~i~~~~~ 241 (864)
++..|+.|.+
T Consensus 167 ~~~~I~~y~~ 176 (177)
T 2h1e_A 167 APEQVKHFQK 176 (177)
T ss_dssp CHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 6888888864
No 45
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=7e-21 Score=233.55 Aligned_cols=340 Identities=14% Similarity=0.164 Sum_probs=200.9
Q ss_pred CCCchHHHHHHHHHHHhhc----------CCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-cccHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWS----------KQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWERE 351 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~----------~~~~~ILade~GlGKTi~ai~~i~~l~~~~-~~~~LIV~P-~sll~qW~~E 351 (864)
..|||||.+|++++...+. .++++++.+.||+|||++++.++..+.... ..++||||| ..+..||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 3699999999999876432 246899999999999999977765443322 348999999 6788999999
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc---c-CCc
Q 002937 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---L-KPI 427 (864)
Q Consensus 352 ~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~---l-~~~ 427 (864)
|..|.+.. + .+........... .....+|+|+|++.+...... + ..-
T Consensus 350 f~~f~~~~---v-~~~~s~~~l~~~L-------------------------~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 350 YQRFSPDS---V-NGSENTAGLKRNL-------------------------DKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp HHTTSTTC---S-SSSCCCHHHHHHH-------------------------HCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred HHHhcccc---c-ccccCHHHHHHHh-------------------------cCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 99988641 1 1111111111100 013468999999999753221 1 112
Q ss_pred ceeEEEecccccccCcccHHHHHH-HhcccccEEEeecCCCCCC-------HhHHHhhhhhcCCCCCCChHHHHHHHhcc
Q 002937 428 KWQCMIVDEGHRLKNKDSKLFSSL-KQYSTRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (864)
Q Consensus 428 ~w~~vIvDEaH~lkn~~s~~~~~l-~~l~~~~rllLTgTP~~n~-------~~el~~ll~~l~p~~~~~~~~f~~~~~~~ 499 (864)
.+.+||+|||||+... ...+.+ ..++...+++|||||.... ..++|. ..
T Consensus 401 ~~~lvIiDEAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG---------------------~~ 457 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFG---------------------RE 457 (1038)
T ss_dssp SCEEEEEESCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHC---------------------SE
T ss_pred cccEEEEEccchhcch--HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhC---------------------Ce
Confidence 6789999999997532 223333 4556678999999997532 222221 10
Q ss_pred chHHHHHHHHHHHhHHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 002937 500 NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKL 579 (864)
Q Consensus 500 ~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~ 579 (864)
. ..+-++..-++ ..+.|.. +.+....+. +..+ .. .... . .....
T Consensus 458 i------------~~Y~l~~AI~d--g~l~p~~--v~y~~v~~~----~~~~--------~~-e~d~----~---~~~~i 501 (1038)
T 2w00_A 458 L------------HSYVITDAIRD--EKVLKFK--VDYNDVRPQ----FKSL--------ET-ETDE----K---KLSAA 501 (1038)
T ss_dssp E------------EEECHHHHHHH--TSSCCEE--EEECCCCGG----GHHH--------HT-CCCH----H---HHHHT
T ss_pred e------------EeecHHHHHhC--CCcCCeE--EEEEeccch----hhhc--------cc-cccH----H---HHHHH
Confidence 0 00000000000 0122221 111211110 1100 00 0000 0 00000
Q ss_pred hCcccccCCCCCCccCchHHHHHhhhcccHHHHHH-HHHHHHHH---------cCceEEEEeccHHHHHHHHHHHhhCC-
Q 002937 580 CCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLD-KMMVKLKE---------QGHRVLIYSQFQHMLDLLEDYLTFKK- 648 (864)
Q Consensus 580 ~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~-~ll~~l~~---------~g~kvlIFsq~~~~ld~L~~~L~~~g- 648 (864)
.+- ..+....++..+. .++..+.. .|.+++|||..+..+..+.+.|...+
T Consensus 502 -~~~------------------~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~ 562 (1038)
T 2w00_A 502 -ENQ------------------QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQE 562 (1038)
T ss_dssp -CST------------------TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -HHH------------------HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhh
Confidence 000 0001122233322 33343322 35689999999999998888886543
Q ss_pred -----------CcEE-EEecc----------C----------CH-----------------------------HHHHHHH
Q 002937 649 -----------WQYE-RIDGK----------V----------GG-----------------------------AERQIRI 667 (864)
Q Consensus 649 -----------~~~~-~i~G~----------~----------~~-----------------------------~~R~~~i 667 (864)
+++. .++|. + +. ..|..++
T Consensus 563 ~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~ 642 (1038)
T 2w00_A 563 EAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLA 642 (1038)
T ss_dssp HHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHH
T ss_pred hhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHH
Confidence 4553 44442 1 11 1478889
Q ss_pred HHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCC--CcEEEEEEEe
Q 002937 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT--NKVMIFRLIT 734 (864)
Q Consensus 668 ~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~--~~V~Vy~lv~ 734 (864)
++|.++.-. +|++++.+.+|+|.+.+ .++++|.+-++..++||+||+.|.+.. ....|+.|+.
T Consensus 643 ~~Fk~g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 643 QRVKNQDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHTTSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHcCCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999875433 79999999999999999 678899999999999999999999874 3466776663
No 46
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.85 E-value=5.9e-23 Score=200.58 Aligned_cols=143 Identities=29% Similarity=0.530 Sum_probs=101.3
Q ss_pred CCCcccccccccccccCcc-CCCC----ccc--------ccccchhheeeeeeecCCccccccccChHHHHHHhhcChhH
Q 002937 97 SPLNDIDKILDCEMRPTVA-GDSD----VSK--------LGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (864)
Q Consensus 97 ~~~~~~~kil~~r~~p~~~-~~~~----~~~--------~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~ 163 (864)
...+.|++||++|++...+ +... ... ..-......||||||+|+||+||||+|+++|.+.. ..+.
T Consensus 11 ~~~~~i~~il~~r~gk~~~~~~~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~--~~~~ 88 (187)
T 2b2y_A 11 EEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN--VRGM 88 (187)
T ss_dssp -CCCBEEEEEEEEEECTTCCSSSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTT--CBCH
T ss_pred hhhhhHHHhhhhhcCCCCCCCCCceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccc--hhhH
Confidence 3457899999999843322 2110 000 01111245799999999999999999999998741 2222
Q ss_pred HHHHHhHHhhhccC-----CCCchh----------hhhcCCccchhhhHhhhhc---CCccceeeeeecccccccccccc
Q 002937 164 RTKVNNFHRQMSSN-----NNAEED----------FVAIRPEWTTVDRILACRG---EDDEKEYLVKYKELSYDECYWEY 225 (864)
Q Consensus 164 ~~~~~~~~~~~~~~-----~~~~~~----------~~~~~~~~~~verIi~~~~---~~~~~~ylVKW~~l~y~~~tWe~ 225 (864)
.++++|.++.... ....++ ...+.++|++|||||+++. .++..+|||||+||||++||||.
T Consensus 89 -~kl~nf~kk~~~~~~~~~~~s~Ed~e~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~ 167 (187)
T 2b2y_A 89 -KKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWED 167 (187)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEC
T ss_pred -HHHHHHHHhhhccccccccCCHHHHhhhhhhhhHHhhhhhhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccc
Confidence 4889998875421 112222 1236789999999999986 57899999999999999999999
Q ss_pred CCCCC-ccHHHHHHHHHH
Q 002937 226 ESDIS-AFQPEIERFIKI 242 (864)
Q Consensus 226 ~~~~~-~~~~~i~~~~~~ 242 (864)
++++. .+++.|+.|.++
T Consensus 168 ~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 168 GALISKKFQACIDEYFSR 185 (187)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHhh
Confidence 87664 467889999864
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=1e-19 Score=226.72 Aligned_cols=316 Identities=14% Similarity=0.149 Sum_probs=203.8
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCC--C
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~--~ 359 (864)
|..+ |+|.+++..+ ..++++|+..+||+|||+.++.++..+... ...+||++|. .+..|+.+.+.++++. +
T Consensus 55 g~~p-~iQ~~ai~~i----l~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRI----LRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CSCC-HHHHHHHHHH----HTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCH-HHHHHHHHHH----HhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 3457 9999999766 467899999999999998666666655443 3589999995 5668899999988864 3
Q ss_pred ----eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEec
Q 002937 360 ----NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (864)
Q Consensus 360 ----~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvD 435 (864)
.+..++|...........+ .....+|+|+|++.+......|. .+++||+|
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~------------------------~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViD 182 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQ------------------------NLRNFKIVITTTQFLSKHYRELG--HFDFIFVD 182 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHH------------------------SGGGCSEEEEEHHHHHHCSTTSC--CCSEEEES
T ss_pred CccceEEEEeCCCChhhHHHHHh------------------------hccCCCEEEEcHHHHHHHHHHhc--cCCEEEEe
Confidence 6777887654432111110 00127899999999987655544 67899999
Q ss_pred ccccccCcccHHHHHHHhcc------------cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHH
Q 002937 436 EGHRLKNKDSKLFSSLKQYS------------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (864)
Q Consensus 436 EaH~lkn~~s~~~~~l~~l~------------~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 503 (864)
|||++.+........+..+. ....+++|||+-.. .++. ..+...+..
T Consensus 183 Eah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~~~----- 241 (1054)
T 1gku_B 183 DVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQLLN----- 241 (1054)
T ss_dssp CHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHHHC-----
T ss_pred ChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcceE-----
Confidence 99998875444444444432 23458888887432 1100 000000000
Q ss_pred HHHHHHHHHhHHHHHHHHhhHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCc
Q 002937 504 QISRLHRMLAPHLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (864)
Q Consensus 504 ~~~~L~~~l~~~~lrr~k~dv~-~~lp~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~h 582 (864)
-.+. ...+........+
T Consensus 242 ------------------i~v~~~~~~~~~i~~~~~-------------------------------------------- 259 (1054)
T 1gku_B 242 ------------------FDIGSSRITVRNVEDVAV-------------------------------------------- 259 (1054)
T ss_dssp ------------------CCCSCCEECCCCEEEEEE--------------------------------------------
T ss_pred ------------------EEccCcccCcCCceEEEe--------------------------------------------
Confidence 0000 0000000000000
Q ss_pred ccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHH
Q 002937 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAE 662 (864)
Q Consensus 583 p~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~ 662 (864)
...|...|.+++.. .+.++|||++.....+.+.+.|... +++..++|.+
T Consensus 260 -----------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~---- 308 (1054)
T 1gku_B 260 -----------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK---- 308 (1054)
T ss_dssp -----------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS----
T ss_pred -----------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH----
Confidence 01122223333332 2678999999999999999999988 9999999987
Q ss_pred HHHHHHHhcCCCCCceEEEee----ccccccCcCCCCC-CEEEEeCCC--------------------------------
Q 002937 663 RQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLATA-DTVIIYDSD-------------------------------- 705 (864)
Q Consensus 663 R~~~i~~Fn~~~~~~~v~Lls----t~a~~~GinL~~a-~~VI~~d~~-------------------------------- 705 (864)
.++++.|.++... +|++ |.++++|||++.+ ++||++|.|
T Consensus 309 -~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1054)
T 1gku_B 309 -KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIER 384 (1054)
T ss_dssp -SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHT
T ss_pred -HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHH
Confidence 4778999876554 6777 8999999999995 999999999
Q ss_pred ---------------------------------------CCcchhhHHHHHHHHhCCCC--cEEEEEEEeCCCHHHHHHH
Q 002937 706 ---------------------------------------WNPHADLQAMARAHRLGQTN--KVMIFRLITRGSIEERMMQ 744 (864)
Q Consensus 706 ---------------------------------------wnp~~~~Qa~gR~~RiGQ~~--~V~Vy~lv~~~TiEe~i~~ 744 (864)
.++..++|+.||++|.|... ....+. ..+ |..++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~--~~~--d~~~~~ 460 (1054)
T 1gku_B 385 LLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFL--LED--DSELLS 460 (1054)
T ss_dssp TCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEE--ECS--CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEE--Eec--CHHHHH
Confidence 68899999999999988764 344443 333 455666
Q ss_pred HHHHhhhH
Q 002937 745 MTKKKMVL 752 (864)
Q Consensus 745 ~~~~K~~l 752 (864)
...+++..
T Consensus 461 ~l~~~l~~ 468 (1054)
T 1gku_B 461 AFIERAKL 468 (1054)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 66665544
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.77 E-value=5.2e-19 Score=200.25 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=84.2
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCE----
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT---- 698 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~---- 698 (864)
.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|.+++.|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 46699999999999999999999999999999996 688899999876544 799999999999999 555
Q ss_pred -------------EEEeCCCCCcchhhHHHHHHHHhCCCC
Q 002937 699 -------------VIIYDSDWNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 699 -------------VI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
||+++.+.++..+.|+.||++|.|...
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 577888999999999999999998654
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.77 E-value=1.2e-17 Score=195.96 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..|.+.+......|.++||||......+.|...|...|+++..++|.....+|..+.+.|+ .+ .++++|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~---~g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ---KG--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS---TT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC---CC--eEEEeCC
Confidence 356888888888877777899999999999999999999999999999999987666654444443 23 2699999
Q ss_pred ccccCcCCC--------CCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|+|+|+. +..+||.||.+-++..|.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 778999999999999999999999999976443
No 50
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=1.3e-18 Score=186.03 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=120.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC--CCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (864)
.+|+|||.+++.++.. +.++||+++||+|||+++++++..+...+.+++|||||. +++.||.+++.+|.. ...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 4899999999987643 367899999999999999888877665555699999996 778999999999963 234
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccc
Q 002937 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (864)
Q Consensus 361 ~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~l 440 (864)
+..+.|...... ......+|+|+||+.+....... ...+++||+||||++
T Consensus 188 ~~~~~~~~~~~~-----------------------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 188 IKKIGGGASKDD-----------------------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLA 237 (282)
T ss_dssp EEECSTTCSSTT-----------------------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGC
T ss_pred EEEEeCCCcchh-----------------------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccC
Confidence 444443321100 11245789999999997654322 247899999999999
Q ss_pred cCcccHHHHHHHhc-ccccEEEeecCCCCCCHhHHHhhhhhcCC
Q 002937 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (864)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~~ll~~l~p 483 (864)
.+. .....+..+ ...++++|||||. |...+++.+..++.|
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 238 TGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp CHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred Ccc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 854 445556666 5778999999995 445777777776655
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.74 E-value=1.6e-18 Score=197.58 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=84.7
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEe
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 702 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~ 702 (864)
.+.++|||++.....+.+.+.|...|+++..++|.+ ++++++.|.++... +|++|.++++|||++. +.||.+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 466999999999999999999999999999999864 46788999865444 7999999999999999 999998
Q ss_pred C--------------------CCCCcchhhHHHHHHHHhCCCC
Q 002937 703 D--------------------SDWNPHADLQAMARAHRLGQTN 725 (864)
Q Consensus 703 d--------------------~~wnp~~~~Qa~gR~~RiGQ~~ 725 (864)
| .+.++..+.|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8899999999999999999743
No 52
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.74 E-value=3.6e-18 Score=193.74 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
+.+.++|||++.....+.+.+.|...|+++..++| ++|+++++.|.++... +|++|.+++.|||++ +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEe
Confidence 34789999999999999999999999999999999 4688999999876544 799999999999999 999985
Q ss_pred -------------------eCCCCCcchhhHHHHHHHHhCC
Q 002937 702 -------------------YDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 702 -------------------~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
++.+.++..+.|+.||++|.|.
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8889999999999999999853
No 53
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=1.8e-17 Score=163.05 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=110.5
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
.+.|+..|.+++... .+.++|||++....++.+.+.|...|+++..++|+++..+|+.+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 567999999998864 567999999999999999999999999999999999999999999999876544 799999
Q ss_pred ccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeC
Q 002937 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 735 (864)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+. .|++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~ 137 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSD 137 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECS
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcC
Confidence 9999999999999999999999999999999999999876544 44543
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.72 E-value=2e-16 Score=185.26 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..|.+.+......|..|||||..+...+.|...|...|+++..++|.....++..+.+.|+. + .++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~---G--~VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR---G--GVTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST---T--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC---C--eEEEecc
Confidence 3468888888888877889999999999999999999999999999999999765555555555543 2 2699999
Q ss_pred ccccCcCCCCC----------------------------------------------------CEEEEeCCCCCcchhhH
Q 002937 686 AGGLGINLATA----------------------------------------------------DTVIIYDSDWNPHADLQ 713 (864)
Q Consensus 686 a~~~GinL~~a----------------------------------------------------~~VI~~d~~wnp~~~~Q 713 (864)
.+|+|+|+... .+||.+|.+-++..+.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999854 49999999999999999
Q ss_pred HHHHHHHhCCCCcE
Q 002937 714 AMARAHRLGQTNKV 727 (864)
Q Consensus 714 a~gR~~RiGQ~~~V 727 (864)
++||++|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999876443
No 55
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=1.4e-17 Score=162.35 Aligned_cols=134 Identities=19% Similarity=0.335 Sum_probs=115.9
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
.+.|+..|.+++... .+.++|||++....++.+.+.|...|+++..++|+++..+|+.+++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 567999999998763 577999999999999999999999999999999999999999999999876544 799999
Q ss_pred ccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 002937 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~~ 748 (864)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.. |...+....+
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4556543 4444444443
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.72 E-value=1.9e-16 Score=185.24 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|+..|.+.+......|..|||||......+.|...|...|+++..++|.....+|..+.+.|+.+ .++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----AVTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----CEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEecc
Confidence 45689999998888777899999999999999999999999999999999997766666666666543 2799999
Q ss_pred ccccCcCCCCC-------------------------------------CEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~~a-------------------------------------~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|+|+|+... .+||.+|.+-++..+.|++||++|.|..-..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 5999999999999999999999999976443
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.72 E-value=5e-18 Score=193.82 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=87.1
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE-
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII- 701 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~- 701 (864)
.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|.++++|||++. +.||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 46799999999999999999999999999999984 677888899765443 7999999999999999 99998
Q ss_pred -------------------eCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 702 -------------------YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 702 -------------------~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
||.+.++..+.|++||++|.|... -..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~-G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV-GDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC-CeEEEEEccc
Confidence 789999999999999999999632 2345566654
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.72 E-value=2.8e-18 Score=202.88 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=84.1
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
+.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|.++++|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999993 799999999876544 799999999999999 999997
Q ss_pred --------------------eCCCCCcchhhHHHHHHHHhCC
Q 002937 702 --------------------YDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 702 --------------------~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
||.+.++..+.|++||++|.|.
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g 521 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS 521 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC
Confidence 5677888999999999999943
No 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.72 E-value=3.8e-17 Score=169.46 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=109.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC
Q 002937 279 EFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP 357 (864)
Q Consensus 279 ~~~~~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p 357 (864)
.+..+.+|+|||.+++..+ ..+.++||+++||+|||+++++++..+ .+++|||||. +++.||.+++.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred cccCCCCcCHHHHHHHHHH----HhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3444578999999999865 345679999999999999998887764 4589999997 7779999999984
Q ss_pred CCe-EEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecc
Q 002937 358 QMN-VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (864)
Q Consensus 358 ~~~-~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDE 436 (864)
+.. +..+.|... ...+|+|+||+.+......+. -.|++|||||
T Consensus 157 ~~~~v~~~~g~~~-----------------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDE 200 (237)
T 2fz4_A 157 GEEYVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 200 (237)
T ss_dssp CGGGEEEESSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred CCCeEEEEeCCCC-----------------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEEC
Confidence 455 666665431 235799999999977655442 3589999999
Q ss_pred cccccCcccHHHHHHHhcccccEEEeecCCCCCCH
Q 002937 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (864)
Q Consensus 437 aH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 471 (864)
+|++.+.. ....+..+...++|+|||||.+++-
T Consensus 201 aH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 201 VHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp SSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred CccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 99998754 3345556678899999999987664
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=166.73 Aligned_cols=126 Identities=19% Similarity=0.326 Sum_probs=98.2
Q ss_pred hcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeec
Q 002937 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (864)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (864)
..+.|+..|.++|.... .+.++|||++....++.|...|...|+++..++|+++..+|+.+++.|+++... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 35789999999988743 578999999999999999999999999999999999999999999999876544 79999
Q ss_pred cccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
+++++|+|++.+++||+||++||+..+.|++||++|.|+... ++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 999999999999999999999999999999999999997644 45566543
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.70 E-value=2.6e-17 Score=193.41 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=88.7
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEE--
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV-- 699 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~V-- 699 (864)
+.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|+++++|||++ +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEE
Confidence 347799999999999999999999999999999984 788899999876544 799999999999997 8888
Q ss_pred ------------------EEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEe
Q 002937 700 ------------------IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (864)
Q Consensus 700 ------------------I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 734 (864)
|++|.+-++..+.|++||++|.|..+.. .|.|++
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 6677788888999999999999864433 455665
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=1.3e-15 Score=196.53 Aligned_cols=320 Identities=16% Similarity=0.217 Sum_probs=187.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHH-HcC--CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFAT-WAP--QM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~-~~p--~~ 359 (864)
.+.|.|.+++.-+ +..+.+++++.+||+|||+.+ ++++..+.....+++|+|+|. ++..|-.+++.+ +.+ +.
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 5788999998765 366789999999999999987 555556665556689999995 555665566644 332 57
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCc----ceeEEEec
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVD 435 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~----~w~~vIvD 435 (864)
++..++|+....... ..+.+|+|+|++.+.......... ...+||+|
T Consensus 1003 ~V~~ltGd~~~~~~~-----------------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKL-----------------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp CEEECCSCHHHHHHH-----------------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred EEEEEECCCCcchhh-----------------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEee
Confidence 888888876543211 124689999999874322221111 34789999
Q ss_pred ccccccCcccHHHH-HHHhc-------c-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHHHhccchHHHHH
Q 002937 436 EGHRLKNKDSKLFS-SLKQY-------S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (864)
Q Consensus 436 EaH~lkn~~s~~~~-~l~~l-------~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~ 506 (864)
|+|.+......... .+..+ . .-..++||||- .|..|+..-+..-....+. |...
T Consensus 1054 E~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~~~----~~~~----------- 1116 (1724)
T 4f92_B 1054 EVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATSTFN----FHPN----------- 1116 (1724)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTEEE----CCGG-----------
T ss_pred chhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCeEE----eCCC-----------
Confidence 99999764332222 22222 2 23568999994 3566655443311111100 0000
Q ss_pred HHHHHHhHHHHHHHHhhHhhcCC-CcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhCcccc
Q 002937 507 RLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (864)
Q Consensus 507 ~L~~~l~~~~lrr~k~dv~~~lp-~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~~lrk~~~hp~l 585 (864)
.-| |...++............. .....
T Consensus 1117 --------------------~RPvpL~~~i~~~~~~~~~~~~~-~~~~~------------------------------- 1144 (1724)
T 4f92_B 1117 --------------------VRPVPLELHIQGFNISHTQTRLL-SMAKP------------------------------- 1144 (1724)
T ss_dssp --------------------GCSSCEEEEEEEECCCSHHHHHH-TTHHH-------------------------------
T ss_pred --------------------CCCCCeEEEEEeccCCCchhhhh-hhcch-------------------------------
Confidence 001 1122222222221110000 00000
Q ss_pred cCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHh--------------------
Q 002937 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-------------------- 645 (864)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~-------------------- 645 (864)
+...+.. ...++.+|||+........+...|.
T Consensus 1145 ---------------------------~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1145 ---------------------------VYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp ---------------------------HHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred ---------------------------HHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 0000111 1123344444444333222211110
Q ss_pred --------------hCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE----eCC---
Q 002937 646 --------------FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDS--- 704 (864)
Q Consensus 646 --------------~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~----~d~--- 704 (864)
.....+..++|+++..+|..+.+.|.++.-. +|++|..++.|||+++..+||- ||.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~ 1273 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIH 1273 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTT
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCccc
Confidence 0123477899999999999999999875543 7999999999999997666652 332
Q ss_pred ---CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 705 ---DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 705 ---~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
+.++..+.|++||++|.|....-.++.++...
T Consensus 1274 ~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1274 AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred ccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 46788999999999999988776666666543
No 63
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=8e-17 Score=157.33 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q 002937 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (864)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~ 687 (864)
.|+..|.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3999999998874 567999999999999999999999999999999999999999999999876544 79999999
Q ss_pred ccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
++|+|++.+++||+||++||+..+.|++||++|.|+... ++.|++....
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 999999999999999999999999999999999997654 4566776643
No 64
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=162.57 Aligned_cols=123 Identities=22% Similarity=0.317 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
.+.|+..|.++|.. .+.++|||++....++.|.+.|...|+++..++|+++..+|+++++.|+++... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 46788888777754 467999999999999999999999999999999999999999999999876544 799999
Q ss_pred ccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCC
Q 002937 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 736 (864)
++++|||++.+++||+||++||+..+.|++||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997644 4566654
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.68 E-value=7e-18 Score=196.46 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=83.7
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEE--
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI-- 700 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI-- 700 (864)
.+.++|||++.....+.+.+.|...|+++..++|+++..+ |.+... .+|++|++++.|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4779999999999999999999999999999999998764 333222 4899999999999996 99988
Q ss_pred --------EeC-----------CCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 701 --------IYD-----------SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 701 --------~~d-----------~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
+|| .+-++..+.||+||++| |..-. |.|++....
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCB
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchh
Confidence 456 67777899999999999 65432 788876543
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.67 E-value=2.1e-15 Score=194.39 Aligned_cols=323 Identities=15% Similarity=0.215 Sum_probs=190.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcC---------CCCceEEEecc-ccHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE---------RISPHLVVAPL-STLRNWEREF 352 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~---------~~~~~LIV~P~-sll~qW~~E~ 352 (864)
.+|.+.|..++.-+ +..+.+.+++.+||+|||+.| ++++..+... ...++|+|+|. ++..+-.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 36899999987654 367889999999999999987 4555555432 12378999995 6666767777
Q ss_pred HHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc------cc
Q 002937 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA------SL 424 (864)
Q Consensus 353 ~~~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~------~l 424 (864)
.+.+. ++++..++|+.... .......+|+|||+|.+..... .+
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~-----------------------------~~~~~~~~IlVtTpEkld~llr~~~~~~~l 205 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLC-----------------------------KEEISATQIIVCTPEKWDIITRKGGERTYT 205 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSC-----------------------------CTTGGGCSEEEECHHHHHHHTTSSTTHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCC-----------------------------ccccCCCCEEEECHHHHHHHHcCCccchhh
Confidence 66543 46777777754211 0112357899999998743211 22
Q ss_pred CCcceeEEEecccccccCcccHHHH-HHH-------hcc-cccEEEeecCCCCCCHhHHHhhhhhcCCCCCCChHHHHHH
Q 002937 425 KPIKWQCMIVDEGHRLKNKDSKLFS-SLK-------QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (864)
Q Consensus 425 ~~~~w~~vIvDEaH~lkn~~s~~~~-~l~-------~l~-~~~rllLTgTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~ 495 (864)
. ...+||+||+|.+....+.... .+. ... .-..++||||- .|+.|+...|. ...
T Consensus 206 ~--~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~wL~---~~~---------- 268 (1724)
T 4f92_B 206 Q--LVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATFLR---VDP---------- 268 (1724)
T ss_dssp T--TEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHHTT---CCH----------
T ss_pred c--CcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHHhC---CCC----------
Confidence 2 3578999999988653222211 111 122 23579999994 34555543322 110
Q ss_pred HhccchHHHHHHHHHHHhHHHHHHHHhhHhhcCC-CcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 002937 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVM 574 (864)
Q Consensus 496 ~~~~~~~~~~~~L~~~l~~~~lrr~k~dv~~~lp-~~~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~~~~~ 574 (864)
.... +. ... ..-| |...+.+.+.-....+. +..+
T Consensus 269 ------~~~~---------~~---~~~---~~RPvpL~~~~~~~~~~~~~~~-~~~~----------------------- 303 (1724)
T 4f92_B 269 ------AKGL---------FY---FDN---SFRPVPLEQTYVGITEKKAIKR-FQIM----------------------- 303 (1724)
T ss_dssp ------HHHE---------EE---CCG---GGCSSCEEEECCEECCCCHHHH-HHHH-----------------------
T ss_pred ------CCCe---------EE---ECC---CCccCccEEEEeccCCcchhhh-hHHH-----------------------
Confidence 0000 00 000 0012 12222222211110000 0000
Q ss_pred HHHHHhCcccccCCCCCCccCchHHHHHhhhcccHHHHHHHHHHHHHHcCceEEEEeccHHHH----HHHHHHHhh----
Q 002937 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTF---- 646 (864)
Q Consensus 575 ~lrk~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~l----d~L~~~L~~---- 646 (864)
.. .+...+.. ...++.+|||+...... ..|.+.+..
T Consensus 304 --~~---------------------------------~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~ 347 (1724)
T 4f92_B 304 --NE---------------------------------IVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTL 347 (1724)
T ss_dssp --HH---------------------------------HHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTST
T ss_pred --HH---------------------------------HHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccch
Confidence 00 00000000 01355788887765433 333332211
Q ss_pred -----------------------------CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCC
Q 002937 647 -----------------------------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (864)
Q Consensus 647 -----------------------------~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~ 697 (864)
....+...+|+++..+|..+.+.|.++.- .+|++|.+++.||||++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i---~vlvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 348 GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHI---QVLVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCC---CEEEECHHHHHHSCCCBSE
T ss_pred hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCC---eEEEEcchhHhhCCCCCce
Confidence 12347788999999999999999987544 3899999999999999888
Q ss_pred EEEE----eCCC------CCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHH
Q 002937 698 TVII----YDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (864)
Q Consensus 698 ~VI~----~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiE 739 (864)
.||- ||+. -++..+.|++|||+|.|....-.++.+...+..+
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 7773 6653 4788999999999999987766666677665443
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.66 E-value=2e-16 Score=186.59 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=94.2
Q ss_pred eEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEEeCC-
Q 002937 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS- 704 (864)
Q Consensus 626 kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~~d~- 704 (864)
..+||+.....++.+.+.|...|+.+..++|+++..+|.++++.|+++++ .+.+|++|.+++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34788888999999999999999999999999999999999999998332 23489999999999999 9999999999
Q ss_pred -------------CCCcchhhHHHHHHHHhCCC-CcEEEEEEEeC
Q 002937 705 -------------DWNPHADLQAMARAHRLGQT-NKVMIFRLITR 735 (864)
Q Consensus 705 -------------~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~ 735 (864)
++++..+.|+.||++|.|+. ....+|.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78899999999999999987 45667666544
No 68
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=154.10 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q 002937 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (864)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~ 687 (864)
.|+..|.+++... .+.++|||++....++.+...|...|+++..++|+++..+|+.+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4888888888654 467999999999999999999999999999999999999999999999876544 79999999
Q ss_pred ccCcCCCCCCEEEEeCCC------CCcchhhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 688 GLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 688 ~~GinL~~a~~VI~~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
++|||++.+++||+||+| +++..+.|++||++|.|+. -.++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6668899999999999964 45567777654
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.65 E-value=5.6e-16 Score=186.75 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=95.3
Q ss_pred cCceEEEEeccHHHHHHHHHHHhh-----------CCCcEEEEeccCCHHHHHHHHHHhcCC--CCCceEEEeecccccc
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTF-----------KKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGL 689 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~-----------~g~~~~~i~G~~~~~~R~~~i~~Fn~~--~~~~~v~Llst~a~~~ 689 (864)
.+.++|||++.....+.+.+.|.. .++.+..++|+++..+|+++++.|... ..+...+|++|.+++.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999988888864 688999999999999999999999611 1344568999999999
Q ss_pred CcCCCCCCEEEEeCC------------------CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 690 GINLATADTVIIYDS------------------DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 690 GinL~~a~~VI~~d~------------------~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
|||++++++||.++. +.+...+.|+.||++|. ++-.+|+|+++...
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999666 77889999999999997 45577888876544
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.44 E-value=1.7e-17 Score=163.02 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
+.|+..|.+++.. ..+.++|||++....++.+.+.|...|+++..++|+++..+|+++++.|+++.. .+|++|.+
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV---NVLVATDV 89 (170)
Confidence 6688888888876 346799999999999999999999999999999999999999999999986543 37999999
Q ss_pred cccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEE
Q 002937 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (864)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 729 (864)
+++|+|++.+++||+||++||+..+.|++||++|.|+...+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998766543
No 71
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.63 E-value=1.3e-15 Score=155.19 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
.+.|+..|.+++.. ..+.++|||++.....+.+.+.|...|+++..++|+++..+|+++++.|+++... +|++|.
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 46799999999975 3478999999999999999999999999999999999999999999999876443 799999
Q ss_pred ccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 002937 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TiEe~i~~~~~ 747 (864)
++++|||++.+++||+||++|++..+.|++||++|.|+.. .++.|++.. |...+....
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~ 147 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALE 147 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHH
Confidence 9999999999999999999999999999999999999764 455666654 333444433
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.63 E-value=1.4e-14 Score=166.19 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=99.3
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
...|...+.+.+......|.+||||+......+.|...|...|++...++|.....+|..+...|.. + .++++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~---g--~VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK---G--MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST---T--CEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC---C--eEEEEcc
Confidence 4568888999888887789999999999999999999999999999999998544444444445533 2 2799999
Q ss_pred ccccCcCCC--------CCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcE
Q 002937 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (864)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V 727 (864)
.+|.|+|+. +..+||.++.|-++..+.|++||++|.|..-..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999997 667999999999999999999999999976544
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.60 E-value=7.7e-15 Score=148.76 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-----CCCCceEEEecc-ccHHHHHHHHHHHcC
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-----ERISPHLVVAPL-STLRNWEREFATWAP 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-----~~~~~~LIV~P~-sll~qW~~E~~~~~p 357 (864)
..++|||.+++..+ .+++++++..+||+|||++++..+..... ....++||++|. ++..||.+++.++.+
T Consensus 22 ~~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLA----LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHH----cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 36899999999887 45788999999999999986555544432 123479999997 777999999999998
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEec
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvD 435 (864)
..++..++|........... ....+|+|+|++.+..... .+....++++|+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEAL--------------------------LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred cceEEEEECCCChHHHHHHh--------------------------hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 88888888765443322111 1247899999998854322 2333468899999
Q ss_pred ccccccCc--ccHHHHHHHhcc-cccEEEeecCC
Q 002937 436 EGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 436 EaH~lkn~--~s~~~~~l~~l~-~~~rllLTgTP 466 (864)
|||++.+. .......+..+. ....+++|||+
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred ChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 99998543 233444444444 34579999998
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=1.5e-14 Score=148.14 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=112.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecc-ccHHHHHHHHHHHc---CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~--~~~~LIV~P~-sll~qW~~E~~~~~---p~ 358 (864)
.++|||.+++..+ ..++++++..+||+|||++++..+....... ..++|||+|. ++..||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 5899999999877 3567899999999999998877666654432 2389999996 77799999999986 47
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDE 436 (864)
.++..++|........... .....+|+|+|++.+.... ..+....++++|+||
T Consensus 112 ~~v~~~~g~~~~~~~~~~~-------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CCEEEESCCSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ceEEEEeCCCChHHHHHHH-------------------------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 8888888875544332221 0124689999999886432 223334678999999
Q ss_pred cccccCc-c--cHHHHHHHhcc-cccEEEeecCCCCCCHhHH
Q 002937 437 GHRLKNK-D--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDEL 474 (864)
Q Consensus 437 aH~lkn~-~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el 474 (864)
||++... . ......+..+. ....+++||||- +...++
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCC-TTTHHH
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecC-HHHHHH
Confidence 9998642 1 22223333343 456799999984 334443
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.58 E-value=4.9e-13 Score=158.77 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
.+++..|...|......|.++|||+....+.+.|.++|...|+++..++|.++..+|.++++.|..+... +|++|.+
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566666666666667789999999999999999999999999999999999999999999999865433 7999999
Q ss_pred cccCcCCCCCCEEEEeCC-----CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 687 ~~~GinL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
+++|+|++.+++||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 999999999999999998 8899999999999999863 34556776654
No 76
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=152.35 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=89.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecc-ccHHH-HHHHHHHH
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRN-WEREFATW 355 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-----~~~~~LIV~P~-sll~q-W~~E~~~~ 355 (864)
+.+|+|||.+++..+. .++++++..+||+|||++++..+..+... ..+++|||||. .+..| |.+++..+
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3589999999998773 56899999999999999998877665432 24589999997 55578 99999998
Q ss_pred cC-CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccc--------cCC
Q 002937 356 AP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--------LKP 426 (864)
Q Consensus 356 ~p-~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~--------l~~ 426 (864)
.+ ...+..+.|.......... .....+|+|+|++.+...... +..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPE--------------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHH--------------------------HHHHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred hccCceEEEEeCCcccchhHHh--------------------------hccCCCEEEECHHHHHHHHhccCcccccccch
Confidence 75 4677777765432210000 012478999999998654332 333
Q ss_pred cceeEEEecccccccCc
Q 002937 427 IKWQCMIVDEGHRLKNK 443 (864)
Q Consensus 427 ~~w~~vIvDEaH~lkn~ 443 (864)
..|++||+||||++...
T Consensus 161 ~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKE 177 (216)
T ss_dssp GGCSEEEETTC------
T ss_pred hcccEEEEECchhhccC
Confidence 47899999999999643
No 77
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=1.5e-14 Score=154.31 Aligned_cols=125 Identities=16% Similarity=0.263 Sum_probs=108.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~ 685 (864)
.+.|+..|.+++.... +.++|||++.....+.|...|...|+.+..++|+++..+|+.+++.|+.+... +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 4679999999997743 78999999999999999999999999999999999999999999999876543 799999
Q ss_pred ccccCcCCCCCCEEEEeCCCCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCC
Q 002937 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (864)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 737 (864)
++++|||++.+++||+||++||+..+.|+.||++|.|+.. .+|.|++...
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 9999999999999999999999999999999999999764 5566776653
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.56 E-value=2.6e-14 Score=147.54 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCC-CCceEEEecc-ccHHHHHHHHHHHc---CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~-~~~~LIV~P~-sll~qW~~E~~~~~---p~ 358 (864)
.++|||.+++..+ ..++++|+..+||+|||++++ .++..+.... ..++|||+|. .+..||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 5999999999876 457899999999999999854 4445444333 3489999996 77799999999986 36
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDE 436 (864)
+++..++|.......... ....+|+|+|++.+.... ..+....++++|+||
T Consensus 122 ~~~~~~~g~~~~~~~~~~---------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR---------------------------LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp CCEEEECTTSCHHHHHHH---------------------------TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred ceEEEEeCCCCHHHHHHh---------------------------ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 788888887654332211 124789999999986532 223334678999999
Q ss_pred cccccCc---ccHHHHHHHhcc-cccEEEeecCC
Q 002937 437 GHRLKNK---DSKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 437 aH~lkn~---~s~~~~~l~~l~-~~~rllLTgTP 466 (864)
||++... .......+..+. ....+++|||+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 9998543 233444455555 44579999996
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=146.92 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=108.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcC-----CCCceEEEecc-ccHHHHHHHHHHHc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~-----~~~~~LIV~P~-sll~qW~~E~~~~~ 356 (864)
..++|||.+++..+ ..++++|+..+||+|||++++..+. .+... ...++||++|. .+..||.+++.++.
T Consensus 46 ~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 36899999999887 4678999999999999998655443 33321 23479999996 77799999999998
Q ss_pred CC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeE
Q 002937 357 PQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQC 431 (864)
Q Consensus 357 p~--~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~ 431 (864)
.. +.+..++|.......... ....+|+|+|++.+..... .+....+++
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~---------------------------~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER---------------------------INNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH---------------------------HTTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCCCeeEEEEECCCCHHHHHHh---------------------------CCCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 54 677788876554332211 1257899999999865322 233446889
Q ss_pred EEecccccccCc--ccHHHHHHHhcc-cccEEEeecCC
Q 002937 432 MIVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 432 vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rllLTgTP 466 (864)
+|+||||++.+. .......+..+. ....+++|||+
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 999999998653 344445555554 34579999997
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.54 E-value=6.2e-14 Score=141.95 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=108.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC-CCceEEEecc-ccHHHHHHHHHHHcC---C
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFATWAP---Q 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~~-~~~~LIV~P~-sll~qW~~E~~~~~p---~ 358 (864)
.++|||.+++..+ ..++++++..+||+|||++++..+..... .. ..++||++|. .+..||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHH----ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 6899999999877 46789999999999999887655544432 22 3379999996 666899999998873 6
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
..+..++|........... ....+|+|+|++.+..... .+....++++|+||
T Consensus 101 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL--------------------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred ceEEEEeCCccHHHHHHhc--------------------------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 7788888876554332221 1357899999999854322 22234678999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEeecCC
Q 002937 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (864)
||++.... ......+..++ ....+++|||+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 99986532 23333444444 45679999998
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.53 E-value=6.7e-14 Score=143.31 Aligned_cols=160 Identities=12% Similarity=0.089 Sum_probs=110.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCC-CCceEEEecc-ccHHHHHHHHHHHcC---
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GER-ISPHLVVAPL-STLRNWEREFATWAP--- 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~-~~~-~~~~LIV~P~-sll~qW~~E~~~~~p--- 357 (864)
.+++|||.+++..+. .++++++..+||+|||++++..+.... ... ..++||++|. .+..||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 368999999998773 568899999999999998655544443 322 3489999996 677999999998874
Q ss_pred ---CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEE
Q 002937 358 ---QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (864)
Q Consensus 358 ---~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~v 432 (864)
+..+..+.|......... ......+|+|+|++.+..... .+....++++
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~--------------------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE--------------------------KLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC--------------------------CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred cccceEEEEEeCCCCHHHHHH--------------------------HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 466777777654432100 011357899999998865322 2233467899
Q ss_pred EecccccccCcc--cHHHHHHHhcc-cccEEEeecCCCCCCHhHH
Q 002937 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDEL 474 (864)
Q Consensus 433 IvDEaH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP~~n~~~el 474 (864)
|+||||++.+.+ ......+..+. ....+++|||+ .+.+.++
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 999999986432 34444555554 34579999997 3444443
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.52 E-value=1.4e-13 Score=144.26 Aligned_cols=167 Identities=14% Similarity=0.226 Sum_probs=113.0
Q ss_pred cccccccCCCCCCC------CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCC----------
Q 002937 270 EFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGER---------- 332 (864)
Q Consensus 270 ~~~~~~~~p~~~~~------~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~~---------- 332 (864)
.|..+..+|..... ..++|||.+++..+ ..++++|+..+||+|||+.++..+. .+....
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i----~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 45555555544322 36999999999877 4578899999999999998655544 333221
Q ss_pred CCceEEEecc-ccHHHHHHHHHHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcE
Q 002937 333 ISPHLVVAPL-STLRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDV 409 (864)
Q Consensus 333 ~~~~LIV~P~-sll~qW~~E~~~~~p--~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 409 (864)
..++|||+|. .+..||.+++.++.. ++.+..+.|........... ....+|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I 153 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV--------------------------QMGCHL 153 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--------------------------SSCCSE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--------------------------CCCCCE
Confidence 2379999996 777999999999875 36667777765443322211 135789
Q ss_pred EEccHHHHHhccc--ccCCcceeEEEecccccccCc--ccHHHHHHHhc--c---cccEEEeecCC
Q 002937 410 LLTSYEMINLDSA--SLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQY--S---TRHRVLLTGTP 466 (864)
Q Consensus 410 vitty~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l--~---~~~rllLTgTP 466 (864)
+|+|++.+..... .+..-.++++|+||||++... .......+..+ . ....+++||||
T Consensus 154 vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 154 LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 9999999865322 222335689999999998543 33444444432 2 34579999997
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.52 E-value=8.6e-14 Score=142.93 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=103.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC-CCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~a-i~~i~~l~~~~-~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
..++|||.+++..+ ..++++++..+||+|||+++ +.++..+.... ..++||++|. .+..||.+++.++.+ +
T Consensus 35 ~~~~~~Q~~~i~~~----~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 36999999999877 45688999999999999985 44455444333 3489999996 667899999999875 4
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeEEEecc
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~vIvDE 436 (864)
..+..++|......... .....+|+|+|++.+..... .+....++++|+||
T Consensus 111 ~~~~~~~g~~~~~~~~~---------------------------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE---------------------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CCEEEECC-------------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred ceEEEEeCCcchHHHHh---------------------------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 66777777654322110 11237899999999854322 22334678999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEeecCC
Q 002937 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 437 aH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (864)
||++...+ ......+..+. ....+++|||+
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 99985432 33444444443 34579999998
No 84
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=117.35 Aligned_cols=57 Identities=28% Similarity=0.639 Sum_probs=51.2
Q ss_pred hhcCCccchhhhHhhhhc-CCccceeeeeeccccccccccccCC-CCCccHHHHHHHHH
Q 002937 185 VAIRPEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIK 241 (864)
Q Consensus 185 ~~~~~~~~~verIi~~~~-~~~~~~ylVKW~~l~y~~~tWe~~~-~~~~~~~~i~~~~~ 241 (864)
..++|+|+.|||||++|. .+|..+|||||+||||++||||.++ ++..++++|+.|.+
T Consensus 5 ~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 5 SSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp SSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 468999999999999996 5788999999999999999999988 66778899999975
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.50 E-value=9.1e-14 Score=145.24 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=108.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-CCceEEEecc-ccHHHHHHHHHHHcC--C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--Q 358 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~-~~~~LIV~P~-sll~qW~~E~~~~~p--~ 358 (864)
..++|||.+++..+ ..++++++..+||+|||++++..+ ..+.... ..++||++|. .+..||.+++.++.. +
T Consensus 64 ~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLA----LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 36899999999877 467899999999999999865444 4444443 3479999996 666899999999864 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEEEec
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIVD 435 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~vIvD 435 (864)
+.+..+.|........... ....+|+|+|++.+..... .+....+++||+|
T Consensus 140 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLAL--------------------------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp CCEEEECTTSCHHHHHHHH--------------------------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred eeEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 6777777765443322111 1357899999999865432 2233467899999
Q ss_pred ccccccCcc--cHHHHHHHhcc-cccEEEeecCC
Q 002937 436 EGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 436 EaH~lkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (864)
|||++.+.. ......+..+. ....+++|||+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 999986532 33444455554 45679999998
No 86
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.50 E-value=6.9e-12 Score=148.81 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a 686 (864)
.+++..|...|......|.++|||+......+.|.++|...|+++..++|.++..+|.++++.|..+... +|++|.+
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3455566566666666789999999999999999999999999999999999999999999999875443 7999999
Q ss_pred cccCcCCCCCCEEEEeCC-----CCCcchhhHHHHHHHHhCCCCcEEEEEEEeCCCH
Q 002937 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (864)
Q Consensus 687 ~~~GinL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Ti 738 (864)
+++|+|++.+++||++|. ++++..++|++||++|.+ +-.++.|++..+.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 999999999999999998 899999999999999962 3445667777653
No 87
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.48 E-value=2e-13 Score=141.63 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-C-CCCceEEEecc-ccHHHHHHHHHHHcC--CC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-E-RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~-~-~~~~~LIV~P~-sll~qW~~E~~~~~p--~~ 359 (864)
.++|||.+++..+ ..++++|+..+||+|||++++..+..... . ...++|||+|. .+..||.+++.++.. +.
T Consensus 52 ~~~~~Q~~ai~~i----~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPC----IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 5999999999877 45688999999999999986555544433 2 23489999996 677899999999875 45
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeEEEeccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~vIvDEa 437 (864)
.+..+.|........... ....++|+|+|++.+.... ..+....+++||+|||
T Consensus 128 ~~~~~~g~~~~~~~~~~l-------------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKL-------------------------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp CEEEECC--------------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred eEEEEECCCchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 666666654433211110 1123789999998875432 2233345789999999
Q ss_pred ccccC--cccHHHHHHHhccc-ccEEEeecCC
Q 002937 438 HRLKN--KDSKLFSSLKQYST-RHRVLLTGTP 466 (864)
Q Consensus 438 H~lkn--~~s~~~~~l~~l~~-~~rllLTgTP 466 (864)
|++.. ....+...+..+.. ...+++|||+
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 99843 33445555555543 4568999998
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.47 E-value=3.4e-14 Score=118.66 Aligned_cols=52 Identities=27% Similarity=0.875 Sum_probs=48.4
Q ss_pred cccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.+.+.++|.+|+++|+||+||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4566789999999999999999999999999999999999999999999864
No 89
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.45 E-value=8.1e-13 Score=136.06 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=103.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcC-------CCCceEEEecc-ccHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGE-------RISPHLVVAPL-STLRNWEREFAT 354 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~-------~~~~~LIV~P~-sll~qW~~E~~~ 354 (864)
.+++|+|.+++..+ ..++++|+..+||+|||+.++..+. .+... ....+||++|. .+..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 37999999999877 4678999999999999988655443 33321 23478999995 566899999999
Q ss_pred Hc-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcc--cccCCcceeE
Q 002937 355 WA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (864)
Q Consensus 355 ~~-p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~--~~l~~~~w~~ 431 (864)
+. ++..+..++|........... ...++|+|+|++.+.... ..+....+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDI--------------------------SKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp HCCTTCCEEEECC------CHHHH--------------------------HSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred hcccCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 85 567777777765433221111 124789999999986532 1222335789
Q ss_pred EEecccccccCc--ccHHHHHHHhcc-cccEEEeecCC
Q 002937 432 MIVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 432 vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rllLTgTP 466 (864)
||+||||++... .......+..+. ....+++|||.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 999999997643 234444455554 34568999996
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.44 E-value=5.7e-14 Score=110.71 Aligned_cols=52 Identities=42% Similarity=1.099 Sum_probs=48.2
Q ss_pred cccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
++.++.+|.+|+++|+||.||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 5 ~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4556789999999999999999999999999999999999999999999864
No 91
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.43 E-value=5.8e-14 Score=111.87 Aligned_cols=51 Identities=27% Similarity=0.791 Sum_probs=46.7
Q ss_pred cccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
.+...|.+|+++|+||+||.|+++||+.|+.|++..+|.++|+|+.|....
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999999999999999999999999999999999999999998643
No 92
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-14 Score=114.18 Aligned_cols=55 Identities=35% Similarity=0.649 Sum_probs=48.0
Q ss_pred hcCCccchhhhHhhhhc----CCc--cceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 186 AIRPEWTTVDRILACRG----EDD--EKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 186 ~~~~~~~~verIi~~~~----~~~--~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
.++|+|++|||||++|. ..| ..+|||||+||||++||||.++++ .++.|+.|.++
T Consensus 6 ~~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l--~~~~I~~f~~r 66 (68)
T 2epb_A 6 SGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV--DPAKVKEFESL 66 (68)
T ss_dssp SSCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS--CHHHHHHHHHH
T ss_pred cCCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc--CHHHHHHHHHh
Confidence 58899999999999883 235 789999999999999999999887 47899999875
No 93
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.41 E-value=9.1e-13 Score=137.30 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=101.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcC--CCCceEEEecc-ccHHHHHHHHHHHcCC--
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE--RISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~--~~~~~LIV~P~-sll~qW~~E~~~~~p~-- 358 (864)
.++|||.+++..+ ..++++++..+||+|||+.++..+ ..+... ....+|||+|. .+..||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVM----LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5999999999776 457889999999999999865444 444332 22379999995 6778999999998753
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc----ccCCcceeEEEe
Q 002937 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIV 434 (864)
Q Consensus 359 ~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~----~l~~~~w~~vIv 434 (864)
..+..+.|...... .. .......++|+|+|++.+..... .+....++++|+
T Consensus 127 ~~~~~~~~~~~~~~---~~----------------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK---KF----------------------GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCEECCCHHHHHHT---TT----------------------STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred ceEEEEecCccHHH---Hh----------------------hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 44544444332211 00 00112467899999999864322 233346789999
Q ss_pred cccccccCc-----ccHHHHHHHhcc--cccEEEeecCC
Q 002937 435 DEGHRLKNK-----DSKLFSSLKQYS--TRHRVLLTGTP 466 (864)
Q Consensus 435 DEaH~lkn~-----~s~~~~~l~~l~--~~~rllLTgTP 466 (864)
||||++... .......+..+. ....+++|||+
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 999998542 223333333332 34679999998
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=107.04 Aligned_cols=50 Identities=46% Similarity=1.119 Sum_probs=46.8
Q ss_pred ccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+.++.+|.+|+.+|+||.||.|+++||+.|+.||+..+|.+.|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999999999999999999999999999999999999999999964
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.38 E-value=1.2e-13 Score=111.06 Aligned_cols=50 Identities=42% Similarity=1.156 Sum_probs=47.1
Q ss_pred ccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+.++++|.+|+.+|+||.||.|+++||+.|+.||+..+|.+.|+|+.|..
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45678999999999999999999999999999999999999999999975
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.38 E-value=5.6e-14 Score=110.78 Aligned_cols=50 Identities=46% Similarity=1.105 Sum_probs=46.7
Q ss_pred cccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.+++.|.+|+.+|+||.||.|+++||+.|+.||+..+|.|.|+|+.|...
T Consensus 3 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999999999999999999999999999999999999999999753
No 97
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.36 E-value=4e-12 Score=132.16 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcC------CCCceEEEecc-ccHHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE------RISPHLVVAPL-STLRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~-i~~l~~~------~~~~~LIV~P~-sll~qW~~E~~~~ 355 (864)
..++|+|.+++..+ ..++++++..+||+|||+.++.. +..+... ....+||++|. .+..||.+.+.++
T Consensus 50 ~~~~~~Q~~~i~~~----~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVA----LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 35999999999776 35689999999999999986544 4444321 23378999995 6668999988887
Q ss_pred c--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc--ccCCcceeE
Q 002937 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQC 431 (864)
Q Consensus 356 ~--p~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~--~l~~~~w~~ 431 (864)
. .++.+..++|........... ....+|+|+|++.+..... .+..-.+++
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRDL--------------------------ERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred HhhcCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 5 357777777765544332221 1246899999998854322 222335789
Q ss_pred EEecccccccCc--ccHHHHHHHhcc-cccEEEeecCC
Q 002937 432 MIVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 432 vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rllLTgTP 466 (864)
+|+||||++-.. .......+..+. ....+++|||+
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 999999998643 233344444453 34578999996
No 98
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=107.39 Aligned_cols=50 Identities=38% Similarity=1.043 Sum_probs=46.7
Q ss_pred ccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+.++.+|.+|+++|+||.||.|+++||+.|+.||+..+|.++|+|+.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44568999999999999999999999999999999999999999999974
No 99
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=135.50 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=104.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcC-----CCCceEEEecc-ccHHHHHHHHHHHcC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE-----RISPHLVVAPL-STLRNWEREFATWAP 357 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~-----~~~~~LIV~P~-sll~qW~~E~~~~~p 357 (864)
.++|+|.+++..+. .++++|+..+||+|||+.++..+ ..+... ....+|||+|. .+..||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999997763 45789999999999999865444 344331 23479999995 677899999999875
Q ss_pred --CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEE
Q 002937 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 432 (864)
Q Consensus 358 --~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~v 432 (864)
...+..+.|........... ....+|+|+|++.+..... .+..-.+++|
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL--------------------------GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred hcCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 35566677765443322221 1247899999998854322 1223357899
Q ss_pred EecccccccCc--ccHHHHHHHhccc-ccEEEeecCC
Q 002937 433 IVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (864)
Q Consensus 433 IvDEaH~lkn~--~s~~~~~l~~l~~-~~rllLTgTP 466 (864)
|+||||++-.. ...+...+..+.. ...+++|||+
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 99999997653 2334444555543 4579999997
No 100
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.29 E-value=1.2e-10 Score=136.30 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=93.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCCCCceEEEeccccH----HHHHHHHHHHcC
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPLSTL----RNWEREFATWAP 357 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i-~~l~~~~~~~~LIV~P~sll----~qW~~E~~~~~p 357 (864)
|..++|-|..|+--| ..|. |....||.|||++++..+ .... ....++||+|+..| .+|...+-+++
T Consensus 77 G~~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 346788999998655 3444 889999999999764433 2222 22379999998877 34777777766
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHH----hcc-----cccCCc-
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN----LDS-----ASLKPI- 427 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~----~~~-----~~l~~~- 427 (864)
++++.+..|+........ ....+|++.|+..+. ++. ..+..-
T Consensus 148 GLsv~~i~Gg~~~~~r~~----------------------------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~ 199 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK----------------------------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRH 199 (997)
T ss_dssp TCCEEECCTTCCHHHHHH----------------------------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCS
T ss_pred CCeEEEEeCCCCHHHHHH----------------------------HcCCCEEEECchhhhhHHHHHhhhcchhhccccc
Confidence 688888777654321111 124789999998883 221 112223
Q ss_pred --ceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCCCHhHHHh
Q 002937 428 --KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (864)
Q Consensus 428 --~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ 476 (864)
...++||||+|++--.. +..-+.+|| |.+.. ..+|.
T Consensus 200 d~~l~~lIIDEaDsmLiDe-----------artPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 200 DHPLHYAIIDEVDSILIDE-----------ARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp SSSSCEEEETTHHHHTTSS-----------TTSCEEEEE-SCSSC-HHHHH
T ss_pred CCCcceEEEechHHHHHhC-----------CCCCeeeeC-CCccc-hHHHH
Confidence 56799999999653221 223488999 87766 44443
No 101
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.26 E-value=1.8e-10 Score=133.77 Aligned_cols=92 Identities=9% Similarity=0.155 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecccccc
Q 002937 611 QLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (864)
Q Consensus 611 ~~l~~ll~~l~-~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~ 689 (864)
..+.+.|..+. ..+.++|||..+...++.+.+.|.. ++ ..+.|.. .+|.++++.|..+ ..+.|.+.+...++
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~--~~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG--KYLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS--CCEEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC--CeEEEEEecCceec
Confidence 33444454444 3466899999999999999888864 33 3445543 4688999999873 23334458899999
Q ss_pred CcCCCC----CCEEEEeCCCCCcc
Q 002937 690 GINLAT----ADTVIIYDSDWNPH 709 (864)
Q Consensus 690 GinL~~----a~~VI~~d~~wnp~ 709 (864)
|||+++ +..||++..|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999996 78999999987554
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.25 E-value=2.7e-12 Score=129.12 Aligned_cols=53 Identities=34% Similarity=0.822 Sum_probs=49.1
Q ss_pred cccccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
++.++++|.+|+++|+|++||+|+++||+.|+.||+..+|.|.|+||.|....
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45677899999999999999999999999999999999999999999998643
No 103
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.25 E-value=2.3e-12 Score=98.00 Aligned_cols=45 Identities=40% Similarity=1.078 Sum_probs=41.7
Q ss_pred cccccccCC---ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 53 SCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 53 ~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
.|.+|++++ +||.||.|+++||+.|+.|++..+|.|+|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 589999765 599999999999999999999999999999999975
No 104
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.22 E-value=5.1e-12 Score=124.78 Aligned_cols=51 Identities=33% Similarity=0.860 Sum_probs=47.7
Q ss_pred cccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
.++++|.+|+++|+|++||+|+++||+.|+.||+..+|.|.|+|+.|....
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 466899999999999999999999999999999999999999999998754
No 105
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=5.7e-12 Score=108.03 Aligned_cols=50 Identities=42% Similarity=1.040 Sum_probs=45.4
Q ss_pred ccccccccccccCCc---eeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
..++..|.+|+.+++ ||+||.|+++||+.|+.||+..+|.++|+|+.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345678999998875 99999999999999999999999999999999974
No 106
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=123.55 Aligned_cols=152 Identities=13% Similarity=0.172 Sum_probs=100.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCC-ceEEEecc-ccHHHHHHHHHHHc---C
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai-~~i~~l~~~~~~-~~LIV~P~-sll~qW~~E~~~~~---p 357 (864)
..++|+|..++..+.. ..++++|+..++|+|||+..+ .++..+.....+ .+|||+|. .+..|+.+.+..+. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 4689999999876621 124889999999999998864 444544443333 69999995 56688888888775 4
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhccc---ccCCcceeEEEe
Q 002937 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIV 434 (864)
Q Consensus 358 ~~~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~---~l~~~~w~~vIv 434 (864)
.+.+....|..... .......+|+|+|++.+..... .+..-...+||+
T Consensus 191 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 191 ELKLAYAVRGNKLE-----------------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp TCCEEEESTTCCCC-----------------------------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CcEEEEEeCCccHh-----------------------------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 56777666653211 0112456899999999865432 233336789999
Q ss_pred cccccccCcc---cHHHHHHHhcc-cccEEEeecCC
Q 002937 435 DEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTP 466 (864)
Q Consensus 435 DEaH~lkn~~---s~~~~~l~~l~-~~~rllLTgTP 466 (864)
||||++-... ......+..+. ....+++|||+
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 9999986421 22223333333 34578999998
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.15 E-value=3.2e-12 Score=108.70 Aligned_cols=51 Identities=25% Similarity=0.762 Sum_probs=44.7
Q ss_pred ccccccccccC-----CceeecCCCCCcccccccCCCCCC----CCCCCcccCccCCCCc
Q 002937 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLN 100 (864)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~~~~----~p~~~W~C~~C~~~~~ 100 (864)
+..+|.+|+.+ +.||+||.|+++||+.|+.||+.. +|.|.|+|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35789999977 569999999999999999999985 8999999999985433
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=99.77 Aligned_cols=46 Identities=43% Similarity=1.063 Sum_probs=42.3
Q ss_pred cccccccc---CCceeecCCCCCcccccccCCCCCCCCCC-CcccCccCC
Q 002937 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (864)
Q Consensus 52 ~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~ 97 (864)
..|.+|+. ++.||.||.|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47999995 56799999999999999999999999999 999999974
No 109
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.13 E-value=1e-11 Score=100.14 Aligned_cols=51 Identities=27% Similarity=0.797 Sum_probs=44.9
Q ss_pred ccccccccccccC-----CceeecCCCCCcccccccCCCCCC--C-CCCCcccCccCCC
Q 002937 48 DAKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA--P-PSGSWRCPECVSP 98 (864)
Q Consensus 48 ~~~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~~~~--~-p~~~W~C~~C~~~ 98 (864)
+.++..|.+|+.+ +.||+||.|+++||+.|+.||+.. + |++.|+|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4566899999987 679999999999999999999976 3 8999999999753
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=119.84 Aligned_cols=49 Identities=27% Similarity=0.863 Sum_probs=46.1
Q ss_pred cccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
++.|.+|+.+|+|++||+|+++||+.|+.||+..+|.|+|+|+.|....
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4689999999999999999999999999999999999999999998653
No 111
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.12 E-value=2.5e-11 Score=98.16 Aligned_cols=45 Identities=44% Similarity=1.165 Sum_probs=41.0
Q ss_pred ccccccc---CCceeecCCCCCcccccccCCCCCCCCCC-CcccCccCC
Q 002937 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (864)
Q Consensus 53 ~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~ 97 (864)
.|.+|++ ++.||.||.|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778885 56699999999999999999999999999 999999985
No 112
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.06 E-value=3.1e-11 Score=97.60 Aligned_cols=49 Identities=33% Similarity=0.870 Sum_probs=43.2
Q ss_pred cccccccccccccCC-----ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 47 IDAKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
...+...|.+|++++ .||+||.|+++||+.|+.|+. +|+|+|+|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 455678999999875 699999999999999999884 8999999999974
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.06 E-value=7.9e-11 Score=96.63 Aligned_cols=45 Identities=44% Similarity=1.156 Sum_probs=40.2
Q ss_pred cccccccCC---ceeecCCCCCcccccccCCCCCCCCCCC-cccCccCC
Q 002937 53 SCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGS-WRCPECVS 97 (864)
Q Consensus 53 ~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~~~~~p~~~-W~C~~C~~ 97 (864)
.|.+|+.++ .||+||.|+++||+.||.|||..+|.|+ |+|+.|.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577787664 4999999999999999999999999999 99999975
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=3.3e-11 Score=102.21 Aligned_cols=47 Identities=34% Similarity=0.914 Sum_probs=42.3
Q ss_pred cccccccccccCC-----ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 49 ~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+++..|.+|+.++ +||+||.|+++||+.|+.|++ +|.|.|+|+.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 3457899999887 699999999999999999985 8999999999985
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=113.75 Aligned_cols=47 Identities=43% Similarity=1.073 Sum_probs=39.1
Q ss_pred ccccccccc---CCceeecCCCCCcccccccCCCCCCCCCC-CcccCccCC
Q 002937 51 DDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (864)
Q Consensus 51 ~~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~ 97 (864)
...|.+|+. ++.||+||.|+++||+.||.||+..+|.| +|+||.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 447999997 46699999999999999999999999999 999999975
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.97 E-value=3.7e-10 Score=98.72 Aligned_cols=66 Identities=35% Similarity=0.762 Sum_probs=52.2
Q ss_pred cccccccccccccCCceeecC--CCCCcccccccCCCCCCCCCCCcccCccCCCCcccccccccccccCc
Q 002937 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTV 114 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~kil~~r~~p~~ 114 (864)
...++++|.+|+++|+||.|| .|+++||+.|+. |..+|.|.|+||.|..........+.+.+-|.+
T Consensus 11 ~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~s 78 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAAVSFCEFCPHS 78 (107)
T ss_dssp CCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCE
T ss_pred cCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcc
Confidence 445678999999999999999 899999999995 899999999999998655333333445555543
No 117
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.95 E-value=1.2e-10 Score=106.76 Aligned_cols=52 Identities=33% Similarity=0.782 Sum_probs=47.3
Q ss_pred ccccccccccccccCCceeecCCCCCcccccccCCCCCC-------CCCCCcccCccCC
Q 002937 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-------PPSGSWRCPECVS 97 (864)
Q Consensus 46 ~~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~-------~p~~~W~C~~C~~ 97 (864)
+++.++++|.+|+.||+|++||.|+++||..|+.|++.. .|.+.|.|+.|..
T Consensus 58 d~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CTTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred cCCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 357788999999999999999999999999999999862 5899999999985
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.91 E-value=7.1e-10 Score=99.37 Aligned_cols=48 Identities=33% Similarity=0.958 Sum_probs=42.7
Q ss_pred ccccccccccCC----ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~~----~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+..+|.+|+.+| .||.||.|+++||+.|+.||+..+|+|+|+|+.|..
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 345788888754 699999999999999999999999999999999974
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.86 E-value=7.1e-10 Score=99.63 Aligned_cols=48 Identities=46% Similarity=1.102 Sum_probs=42.6
Q ss_pred ccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+...|.+|+.+ +.||.||.|+++||+.|+.||+..+|.|+|+|+.|..
T Consensus 57 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 57 ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp GGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 34568888874 5699999999999999999999999999999999975
No 120
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=98.86 E-value=8.7e-10 Score=91.38 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=48.6
Q ss_pred ccchhhhHhhhhc-CCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHhhh
Q 002937 190 EWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (864)
Q Consensus 190 ~~~~verIi~~~~-~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~~ 245 (864)
+..+||+||++|. ..+..+|||||+|++++++|||.+..+..++..|+.|......
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~~ 68 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTE 68 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSC
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhhc
Confidence 3468999999986 5678999999999999999999999887788999999876543
No 121
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.83 E-value=6.5e-10 Score=92.00 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=43.8
Q ss_pred ccccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+.+..+|.+|+.+ +.||.||.|+.+||..|+.+++...|.+.|+|+.|..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3455789999976 3599999999999999999999888889999999975
No 122
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.80 E-value=5.6e-10 Score=85.82 Aligned_cols=51 Identities=29% Similarity=0.500 Sum_probs=44.6
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHh
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (864)
.+||+||++|...|..+|||||+|.|++++|||+++.+ .++..|+.|.+.+
T Consensus 3 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~q 53 (55)
T 3f2u_A 3 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 53 (55)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHC--
T ss_pred EEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC-CCHHHHHHHHHHc
Confidence 37899999998889999999999999999999999988 5788999998643
No 123
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=98.80 E-value=9.3e-10 Score=89.98 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=46.3
Q ss_pred ccchhhhHhhhhc-CCccceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 190 EWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 190 ~~~~verIi~~~~-~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
+-.+||+||++|. .+|..+|||||+|++++++|||+++.+..++..|+.|.+.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 73 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR 73 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence 3468999999985 4678999999999999999999999887778899999864
No 124
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.78 E-value=7.1e-10 Score=88.68 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=46.0
Q ss_pred cchhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 191 WTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 191 ~~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
...||+||+.|...|..+|||||+|.+++++|||+++.+ .++..|+.|.+.
T Consensus 16 ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL-~c~~lI~~F~~~ 66 (69)
T 1q3l_A 16 EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 66 (69)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHH
T ss_pred cEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC-CCHHHHHHHHHH
Confidence 468999999998888999999999999999999999988 578899999874
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.76 E-value=2.2e-09 Score=96.32 Aligned_cols=49 Identities=37% Similarity=0.941 Sum_probs=43.9
Q ss_pred ccccccccccCCc---eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+..+|.+|+++++ ||.||.|+++||+.|+.||+..+|++.|+|+.|..-
T Consensus 53 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp TTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3457889998775 999999999999999999999999999999999753
No 126
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.73 E-value=2.2e-09 Score=84.78 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=44.8
Q ss_pred hhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHh
Q 002937 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (864)
Q Consensus 193 ~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (864)
+||+||+++...|..+|||||+|.|++++|||++..+. +++.|+.|....
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-c~~li~~f~~~~ 51 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK-CVRILKQFHKDL 51 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC-CHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC-CHHHHHHHHHHH
Confidence 58999999988899999999999999999999999885 788999997643
No 127
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=98.73 E-value=5.8e-09 Score=90.93 Aligned_cols=75 Identities=25% Similarity=0.546 Sum_probs=48.3
Q ss_pred Cccccccccccccc-CccCCC------------CcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHH
Q 002937 99 LNDIDKILDCEMRP-TVAGDS------------DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRT 165 (864)
Q Consensus 99 ~~~~~kil~~r~~p-~~~~~~------------~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~ 165 (864)
.-.+++|+++|... .+.+.. ...-..-......+|||||+|+|+.||||+|+++|.++ ..++++
T Consensus 13 ~etie~v~~~r~g~~g~tg~~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~--~~~g~k- 89 (115)
T 2b2y_C 13 FETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQ--NVRGMK- 89 (115)
T ss_dssp CCBEEEEEEEEEECTTCCSGGGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHH--TCBCTH-
T ss_pred HHHHHHHHHhhcCCCCCCCCCCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCc--cchHHH-
Confidence 35789999998743 332211 00001111234579999999999999999999999874 234554
Q ss_pred HHHhHHhhhcc
Q 002937 166 KVNNFHRQMSS 176 (864)
Q Consensus 166 ~~~~~~~~~~~ 176 (864)
++.+|.++...
T Consensus 90 klenY~kk~~e 100 (115)
T 2b2y_C 90 KLDNYKKKDQE 100 (115)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHH
Confidence 89999987543
No 128
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.72 E-value=2.4e-09 Score=84.97 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=44.5
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
..||+||++|...+..+|||||+|+++.++|||++..+.. ...|+.|...
T Consensus 11 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~-~~li~~f~~~ 60 (64)
T 2dnv_A 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFESG 60 (64)
T ss_dssp CCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC-HHHHHHHHCC
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC-HHHHHHHHHH
Confidence 4899999999888899999999999999999999998765 5789999763
No 129
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.70 E-value=1.4e-09 Score=84.80 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=44.7
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHh
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (864)
..||+||++|...|..+|||||+|.|++++|||+++.+ .++..|+.|....
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~~ 54 (59)
T 3fdt_A 4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHC--
T ss_pred EEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC-CCHHHHHHHHHhh
Confidence 47899999998888999999999999999999999988 5788999998743
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.69 E-value=1.2e-09 Score=98.28 Aligned_cols=52 Identities=33% Similarity=0.777 Sum_probs=45.9
Q ss_pred ccccccccccccccCCceeecCCCCCcccccccCCCCC-----CC--CCCCcccCccCC
Q 002937 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-----AP--PSGSWRCPECVS 97 (864)
Q Consensus 46 ~~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~-----~~--p~~~W~C~~C~~ 97 (864)
+++.++++|.+|++||+|++||.|+++||..|+.|++. .+ |.+.|.|+.|..
T Consensus 52 d~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34667889999999999999999999999999999853 33 899999999975
No 131
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.69 E-value=1.5e-09 Score=85.57 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=47.9
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHhhh
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~~ 245 (864)
..||+||++|...|..+|||||+|.+++++|||+++.+..++..|+.|....+.
T Consensus 5 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~~ 58 (62)
T 3lwe_A 5 FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 58 (62)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhHh
Confidence 579999999988889999999999999999999998887778999999875543
No 132
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.69 E-value=2.2e-09 Score=82.17 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=44.1
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..||+||++|...|..+|||||+|.+++++|||++..+.. +..|+.|..
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCC-HHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCCC-HHHHHHHHh
Confidence 4799999999888899999999999999999999988764 788999976
No 133
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.68 E-value=5.5e-09 Score=84.65 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=46.8
Q ss_pred chhhhHhhhhcCC-ccce-eeeeeccccccccccccCCCCCccHHHHHHHHHHhh
Q 002937 192 TTVDRILACRGED-DEKE-YLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (864)
Q Consensus 192 ~~verIi~~~~~~-~~~~-ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (864)
..||+||++|... |..+ |||||+|.+++++|||+++.+..++..|+.|.....
T Consensus 9 y~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 9 YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp SCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred EEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence 3899999999776 7788 999999999999999999988778899999987543
No 134
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.68 E-value=1.4e-08 Score=82.08 Aligned_cols=46 Identities=30% Similarity=0.920 Sum_probs=39.5
Q ss_pred cccccccccc--CCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
...+| +|++ .|.||.||. |+ ..||+.|+ .|...|.+.|+||.|...
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCcc
Confidence 34688 7997 577999999 88 69999999 588899999999999853
No 135
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.67 E-value=4.5e-09 Score=85.80 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=45.4
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (864)
..||+||++|...|..+|||||+|++++++|||+++.+ .++..|+.|...
T Consensus 14 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL-~~~~li~~f~~~ 63 (73)
T 1ap0_A 14 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 63 (73)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC-CCHHHHHHHTTT
T ss_pred EEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC-CCHHHHHHHHHH
Confidence 39999999998888999999999999999999999988 478899999764
No 136
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.66 E-value=4e-08 Score=82.99 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=40.4
Q ss_pred cccccccccccc--CCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCCC
Q 002937 48 DAKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 48 ~~~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+....+| +|++ .|.||.||. |+ .+||+.|+ .+...|.+.|+||.|...
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCc
Confidence 3455788 8997 577999999 77 69999999 588889999999999864
No 137
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=103.04 Aligned_cols=150 Identities=21% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCCC---CceEEEeccccH-HHHHHHHHHHcCCC
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI---SPHLVVAPLSTL-RNWEREFATWAPQM 359 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~-~l~~~~~---~~~LIV~P~sll-~qW~~E~~~~~p~~ 359 (864)
.++++|.+++..+ ..++..++..++|+|||.+....+. .+...+. ..+++++|...+ .|..+.+......
T Consensus 61 p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 61 PVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp GGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred ChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4788999998877 5678899999999999976544433 3333322 267888896544 4555566554311
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEeccccc
Q 002937 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (864)
Q Consensus 360 ~~~~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~ 439 (864)
.+....|... ...........+|+|+|++.+...... .--++++||+||||+
T Consensus 136 ~~~~~~g~~~---------------------------~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 136 EPGKSCGYSV---------------------------RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHE 187 (235)
T ss_dssp CTTSSEEEEE---------------------------TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTS
T ss_pred ccCceEEEee---------------------------chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCcc
Confidence 0000000000 000011124578999999887654322 123568999999998
Q ss_pred c-cCccc---HHHHHHHhcccccEEEeecCCC
Q 002937 440 L-KNKDS---KLFSSLKQYSTRHRVLLTGTPL 467 (864)
Q Consensus 440 l-kn~~s---~~~~~l~~l~~~~rllLTgTP~ 467 (864)
. -.... .+...+........+++|||+-
T Consensus 188 ~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 188 RDINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 3 21111 1112222223456799999974
No 138
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.64 E-value=2.9e-09 Score=81.90 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=43.7
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..||+||++|...|..+|||||+|.+++++|||+++.+.. +..|+.|..
T Consensus 4 y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~~-~~li~~f~~ 52 (55)
T 1pfb_A 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILD-RRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCS-THHHHHHHT
T ss_pred EEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCCC-HHHHHHHHH
Confidence 4799999999888899999999999999999999987764 788999875
No 139
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.64 E-value=7.2e-08 Score=112.34 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcC--CCe
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (864)
.++||+|.+.+..+......++.+++...||+|||+..+..+.. ...+++|++|+ .+..|+.+++..+.. +++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 47899999998877777788899999999999999887554443 23589999995 566889999987642 566
Q ss_pred EEEEecC
Q 002937 361 VVMYVGT 367 (864)
Q Consensus 361 ~~~~~g~ 367 (864)
+++..|.
T Consensus 78 ~~~l~gr 84 (551)
T 3crv_A 78 FSFLVGK 84 (551)
T ss_dssp EEECCCH
T ss_pred EEEEccc
Confidence 7766663
No 140
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.64 E-value=3.6e-09 Score=80.95 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=43.6
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..||+||++|...|..+|||||+|.+++++|||+++.+.. +..|+.|.+
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~li~~f~~ 52 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQK 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCS-HHHHHHHHC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCCC-HHHHHHHHh
Confidence 4799999999888999999999999999999999988764 678888875
No 141
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=6.1e-09 Score=85.21 Aligned_cols=52 Identities=29% Similarity=0.360 Sum_probs=45.5
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHhh
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (864)
..||+||++|...+..+|||||+|.++.++|||+++.+.. ...|+.|.....
T Consensus 11 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~-~~li~~f~~~~~ 62 (74)
T 2d9u_A 11 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEH 62 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC-HHHHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC-HHHHHHHHHhhh
Confidence 3899999999888899999999999999999999988765 678999987543
No 142
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.62 E-value=9.5e-09 Score=79.89 Aligned_cols=46 Identities=33% Similarity=0.951 Sum_probs=39.1
Q ss_pred ccccccccccc--CCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCC
Q 002937 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 49 ~~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
.+..+| +|++ .|.|+.||. |+ ..||+.|+ .+...|.+.|+||.|..
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccC
Confidence 345678 8997 678999999 87 69999999 68889999999999974
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=89.63 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=44.6
Q ss_pred ccccccccccccCCce---eecCCCCCcccccccCCCCCCCCCCCcccCccC
Q 002937 48 DAKDDSCQACGESENL---MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (864)
Q Consensus 48 ~~~~~~C~~C~~~~~l---~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~ 96 (864)
..++++|.+|+.+|++ |.|+.|+++||..|+.|++..++.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899999999875 999999999999999999988889999999986
No 144
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=98.61 E-value=5.1e-09 Score=79.60 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=38.7
Q ss_pred hhhhHhhhhcCC-ccc-eeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 193 TVDRILACRGED-DEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 193 ~verIi~~~~~~-~~~-~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
+||+||++|... |.. +|||||+| |+++|||+++.+. +..|+.|..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkg--y~~~TWEp~~nL~--~~li~~f~~ 48 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCCSS--SSSHHHHTS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECC--CCcCCccchHHCC--HHHHHHHHH
Confidence 589999999766 777 99999998 7999999999875 677888865
No 145
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.60 E-value=1e-08 Score=80.17 Aligned_cols=46 Identities=30% Similarity=0.921 Sum_probs=38.6
Q ss_pred ccccccccccc--CCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCC
Q 002937 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 49 ~~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
....+| +|++ .|.||.||. |+ ..||+.|+ .+...|.|.|+||.|..
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccC
Confidence 345678 7997 577999999 66 79999999 58889999999999974
No 146
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.60 E-value=4.2e-09 Score=84.88 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=43.4
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
.+||+||+.|...|..+|||||+|.+++++|||+++.+. ++..|+.|..
T Consensus 21 yeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~-~~~lI~~F~~ 69 (72)
T 1pdq_A 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHC-
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC-CHHHHHHHHH
Confidence 589999999988889999999999999999999998775 4788999865
No 147
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.60 E-value=9e-09 Score=83.28 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=44.1
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
.+||+||+.|...|..+|||||+|.+.+++|||+++.+.. +..|+.|.+
T Consensus 22 yeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~~-~~li~~F~~ 70 (73)
T 2k1b_A 22 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEE 70 (73)
T ss_dssp CCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCSC-HHHHHHHHT
T ss_pred EEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCCC-HHHHHHHHH
Confidence 3899999999888899999999999999999999998764 788999975
No 148
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=98.59 E-value=6.9e-10 Score=92.11 Aligned_cols=54 Identities=26% Similarity=0.400 Sum_probs=43.3
Q ss_pred CCccchhhhHhhhhc-CCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 188 RPEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 188 ~~~~~~verIi~~~~-~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..+..+||+||+.|. ..|..+|||||+|.|++++|||+++.+..++..|+.|..
T Consensus 20 ~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~ 74 (81)
T 4hae_A 20 SGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNG 74 (81)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCS
T ss_pred CCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHH
Confidence 345579999999985 467899999999999999999998876555556666653
No 149
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.57 E-value=1.5e-08 Score=79.52 Aligned_cols=46 Identities=30% Similarity=0.934 Sum_probs=38.7
Q ss_pred ccccccccccc--CCceeecCC--CC-CcccccccCCCCCCCCCCCcccCccCC
Q 002937 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 49 ~~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+...+| +|++ .|.|+.||. |+ ..||..|+ .+...|.+.|+||.|..
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCccc
Confidence 345678 8997 577999999 66 89999999 57788999999999975
No 150
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=98.57 E-value=1.4e-08 Score=83.14 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=45.9
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHHHhh
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (864)
..||+||++|...+..+|||||+|.+++++|||+++.+.. +..|+.|....+
T Consensus 14 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~-~~li~~f~~~~~ 65 (74)
T 2kvm_A 14 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEEKEE 65 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSC-HHHHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCC-HHHHHHHHHHhh
Confidence 4899999999888899999999999999999999998764 688999987544
No 151
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.49 E-value=6.4e-08 Score=84.01 Aligned_cols=45 Identities=20% Similarity=0.560 Sum_probs=37.6
Q ss_pred cccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 53 SCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 53 ~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+|..|..+|.||.||.|+++||..|+.|++..+|+ .|+|+.|...
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 34445556779999999999999999999988885 8999999753
No 152
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.46 E-value=2.6e-08 Score=78.17 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=42.0
Q ss_pred chhhhHhhhhcCCccc-eeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~-~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..||+||++|...+.. +|||||+|.|.+++|||++..+. +.+.|..|.+
T Consensus 8 y~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~~~~ 57 (61)
T 3g7l_A 8 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWK 57 (61)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT-BCHHHHHHHH
T ss_pred EEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC-CHHHHHHHHH
Confidence 5899999999877777 99999999999999999998875 5677777654
No 153
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.46 E-value=7e-08 Score=81.31 Aligned_cols=47 Identities=28% Similarity=0.767 Sum_probs=38.8
Q ss_pred cccccccccccc--CCceeecCCCC---CcccccccCCCCCCCCCCCcccCc-cCC
Q 002937 48 DAKDDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPE-CVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~--~~~l~~C~~C~---~~~H~~Cl~p~~~~~p~~~W~C~~-C~~ 97 (864)
++...+| +|++ .|.||.||.|+ .+||+.|+ .|...|.+.|+||. |..
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcc
Confidence 3445788 8996 46799999966 89999999 68888999999999 973
No 154
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=98.43 E-value=6.8e-08 Score=82.30 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=45.5
Q ss_pred chhhhHhhhhc--CCccceeeeeecccc-ccccccccCCCCCccHHHHHHHHHHhh
Q 002937 192 TTVDRILACRG--EDDEKEYLVKYKELS-YDECYWEYESDISAFQPEIERFIKIQS 244 (864)
Q Consensus 192 ~~verIi~~~~--~~~~~~ylVKW~~l~-y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (864)
..||+||++|. ..|..+|||||+|.+ .+++|||++..+..++..|+.|.....
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~~ 86 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHG 86 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHHT
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHcC
Confidence 48999999984 467899999999987 688999999988778899999987543
No 155
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.37 E-value=7.4e-08 Score=76.07 Aligned_cols=40 Identities=25% Similarity=0.558 Sum_probs=33.0
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHH
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
+.|++|++.|.... ..+|||||+|+++.+|||+|+++|.|
T Consensus 1 ~EVE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nl~c 40 (64)
T 3mts_A 1 GEVEYLCDYKKIRE----------------QEYYLVKWRGYPDSESTWEPRQNLKC 40 (64)
T ss_dssp CCEEEEEEEEECSS----------------CEEEEEEETTSCGGGCEEEEGGGCCC
T ss_pred CCceEEEEEEEeCC----------------eEEEEEEEecCCCcCCcEeEHHHCCC
Confidence 46889999875321 27999999999999999999999853
No 156
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.35 E-value=8.5e-08 Score=76.07 Aligned_cols=51 Identities=31% Similarity=0.537 Sum_probs=40.4
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (864)
..|++||+.|.+.. ..+|||||+|+++.+|||+|+++|.+ + ..++.|.++.
T Consensus 11 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~~l~~-----~---~li~~f~~~~ 61 (64)
T 2dnv_A 11 FAAEALLKRRIRKG----------------RMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFESGP 61 (64)
T ss_dssp CCCCCEEEEEESSS----------------SEEEEECCSSCCCSSCCEEETTTCCC-----H---HHHHHHHCCT
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEECCCCcccCCccCHhHCCC-----H---HHHHHHHHHc
Confidence 46899999886321 27999999999999999999998863 2 3678887654
No 157
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.32 E-value=8.5e-08 Score=73.26 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=38.1
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
..|++|++.|... ...+|||||+|+++.+|||+|+++|.+ | ..++.|.++
T Consensus 4 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~r 53 (54)
T 3h91_A 4 FAAECILSKRLRK----------------GKLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCS-----H---HHHHHHHC-
T ss_pred eEEEEEEEEEEeC----------------CcEEEEEEEeCCCCcCCCeecHhHCCC-----H---HHHHHHHhc
Confidence 3578898887532 137999999999999999999999864 2 267777654
No 158
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.31 E-value=9.9e-08 Score=72.95 Aligned_cols=49 Identities=33% Similarity=0.589 Sum_probs=37.9
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.|++|++.|... ...+|||||+|+++.+|||+|+++|.+ | ..++.|..+
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~R 53 (54)
T 3i91_A 5 AAEALLKRRIRK----------------GRMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCC-----H---HHHHHHHHC
T ss_pred EEEEEEEEEEeC----------------CcEEEEEEEeCCCcccCcccchhHCCC-----H---HHHHHHHhc
Confidence 578899887532 137999999999999999999999864 2 356777653
No 159
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.30 E-value=1e-07 Score=73.09 Aligned_cols=49 Identities=33% Similarity=0.582 Sum_probs=37.7
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.|++|++.|... ...+|||||+|+++.++||+|+++|.+ | ..++.|.++
T Consensus 4 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~ 52 (55)
T 3f2u_A 4 VVEKVLDRRVVK----------------GKVEYLLKWKGFSDEDNTWEPEENLDC-----P---DLIAEFLQS 52 (55)
T ss_dssp CEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCC-----H---HHHHHHHC-
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEEeCCCccCCeeEHHHCCC-----H---HHHHHHHHH
Confidence 578999887542 137999999999999999999999843 3 256777654
No 160
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2e-07 Score=76.19 Aligned_cols=52 Identities=33% Similarity=0.627 Sum_probs=41.2
Q ss_pred CcccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 002937 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (864)
Q Consensus 99 ~~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (864)
...|++||+.|.... ..+|||||+|+++.||||+|+++|.+ + ..++.|.++.
T Consensus 10 ey~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~~ 61 (74)
T 2d9u_A 10 VFAAECILSKRLRKG----------------KLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKKE 61 (74)
T ss_dssp CCCEEEEEEEEEETT----------------EEEEEEEETTSCTTTCEEEEGGGCCC-----H---HHHHHHHHHH
T ss_pred cEEEEEEEEEEEeCC----------------cEEEEEEECCCCCccCccccHHHCCC-----H---HHHHHHHHhh
Confidence 357899999986421 37999999999999999999999864 2 3678887654
No 161
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.28 E-value=1.2e-07 Score=75.76 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=39.4
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
..|++||+.|.+.. ..+|||||+|+++.+|||+|+++|.| + ..++.|.++
T Consensus 17 y~VEkIld~R~~~g----------------~~eYlVKWkGy~~~~~TWEp~enL~c-----~---~lI~~F~~~ 66 (69)
T 1q3l_A 17 YAVEKIIDRRVRKG----------------MVEYYLKWKGYPETENTWEPENNLDC-----Q---DLIQQYEAS 66 (69)
T ss_dssp EEEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEEGGGEEC-----H---HHHHHHHHH
T ss_pred EEEEEEEEEEEECC----------------eEEEEEEEcCCCcccCCccchHHCCC-----H---HHHHHHHHH
Confidence 46899999986431 37999999999999999999999843 3 367777654
No 162
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.27 E-value=1.3e-07 Score=72.65 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=38.0
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.|++|++.|... ...+|||||+|+++.+|||+|+++|.+ + ..++.|.++
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVKWkgy~~~~~TWEp~~~l~~-----~---~li~~f~~~ 53 (55)
T 1pfb_A 5 AAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHHTS
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEcCCCCccCcEeEHHHCCC-----H---HHHHHHHHh
Confidence 578899887532 127999999999999999999999864 2 357777653
No 163
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.25 E-value=1.5e-07 Score=76.10 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=39.6
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
..|++||+.|.+.. ..+|||||+|++..+|||+|+++|.+. ..++.|.++
T Consensus 22 yeVEkIld~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~enL~~~--------~li~~F~~~ 71 (73)
T 2k1b_A 22 FAVESIRKKRVRKG----------------KVEYLVKWKGWPPKYSTWEPEEHILDP--------RLVMAYEEK 71 (73)
T ss_dssp CCCSEEEEEEEETT----------------EEEEEEECTTCCGGGCCEEETTSCSCH--------HHHHHHHTS
T ss_pred EEEEEEEEEEEcCC----------------cEEEEEEECCCCcccCeecchHHCCCH--------HHHHHHHHh
Confidence 47899999986421 279999999999999999999998642 367888654
No 164
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.22 E-value=3.7e-07 Score=71.87 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=39.7
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (864)
..|++|++.|... ...+|||||+|+++.++||+|+++|. .++ ..++.|.++.
T Consensus 5 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~----~~~---~li~~f~~~~ 56 (62)
T 3lwe_A 5 FEVEKILDMKTEG----------------GKVLYKVRWKGYTSDDDTWEPEIHLE----DCK---EVLLEFRKKI 56 (62)
T ss_dssp CCEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEHHHHT----TCH---HHHHHHHHHH
T ss_pred EEEEEEEEEEEcC----------------CeEEEEEEEeCCCCcCCCeeeHhHhh----ccH---HHHHHHHHhh
Confidence 4678999987532 13799999999999999999999983 233 3677787654
No 165
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=98.21 E-value=3.9e-07 Score=74.41 Aligned_cols=52 Identities=19% Similarity=0.597 Sum_probs=39.5
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
..|++||+.|.... ...+|||||+|+++.+|||+|+++|.. ++ ..++.|.++
T Consensus 22 yeVE~Il~~r~~~~---------------g~~~YlVkWkGy~~~~~TWEp~~nl~~----~~---~li~~f~~~ 73 (75)
T 2rsn_A 22 YEVEDILADRVNKN---------------GINEYYIKWAGYDWYDNTWEPEQNLFG----AE---KVLKKWKKR 73 (75)
T ss_dssp EEEEEEEEEEECSS---------------SCEEEEEEEESSCGGGCEEEEGGGGTT----TH---HHHHHHHHH
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEECCCCCcCCeeecHHHccC----hH---HHHHHHHHh
Confidence 46899999875321 127899999999999999999999852 22 367788765
No 166
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.20 E-value=5.9e-07 Score=72.67 Aligned_cols=54 Identities=17% Similarity=0.414 Sum_probs=40.1
Q ss_pred cccccccccccccCccCCCCcccccccchhhee-eeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQ-YLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~e-ylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (864)
..|++|++.|.... ...+ |||||+|+++.+|||+|+++|. .++ ..++.|.++..
T Consensus 9 y~VE~Il~~r~~~~---------------g~~~~YlVKWkGy~~~~~TWEp~enL~----~~~---~li~~f~~~~~ 63 (70)
T 1g6z_A 9 YEVERIVDEKLDRN---------------GAVKLYRIRWLNYSSRSDTWEPPENLS----GCS---AVLAEWKRRKR 63 (70)
T ss_dssp SCCCSCSEEECCTT---------------SSCCEEEECCTTTTSSCCEEECGGGGS----SCH---HHHHHHHHHHT
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEEECCCCCCCCceecHHHHh----hhH---HHHHHHHHhcc
Confidence 46899999986431 1256 9999999999999999999983 233 35777876543
No 167
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=5e-07 Score=72.31 Aligned_cols=55 Identities=33% Similarity=0.577 Sum_probs=39.0
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
..|++||+.|.+.... . .....+|||||+|++|-+|||+|+++|. + .+++.|.++
T Consensus 12 ~~VErIl~~r~~~~~~-~---------g~~~~eYLVKWkgl~y~e~TWE~~~~l~------~---~~I~~f~~r 66 (68)
T 2epb_A 12 VEVDRILEVAHTKDAE-T---------GEEVTHYLVKWCSLPYEESTWELEEDVD------P---AKVKEFESL 66 (68)
T ss_dssp CCCCEEEEEEEEECSS-S---------CCEEEEEEEECTTSCGGGCCEEETTTSC------H---HHHHHHHHH
T ss_pred eEEeEEEEEEeccccc-C---------CCcceEEEEEEcCCChhcCccccchhcC------H---HHHHHHHHh
Confidence 3689999987532110 0 0013799999999999999999998872 2 367888754
No 168
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.19 E-value=2.2e-07 Score=72.38 Aligned_cols=50 Identities=36% Similarity=0.650 Sum_probs=37.6
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (864)
.|++|++.|... ...+|||||+|+++.++||+|+++|.+ | ..+..|.++.
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~~ 54 (59)
T 3fdt_A 5 VVEKVLDRRVVK----------------GQVEYLLKWKGFSEEHNTWEPEKNLDC-----P---ELISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGEEC-----H---HHHHHHHC--
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEeCCCcccCCccchhHCCC-----H---HHHHHHHHhh
Confidence 578899887532 137999999999999999999999843 3 2567776554
No 169
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.18 E-value=2.1e-07 Score=74.91 Aligned_cols=49 Identities=29% Similarity=0.546 Sum_probs=37.9
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (864)
..|++||+.|.+.. ..+|||||+|+++.+|||+|+++|.+ + ..++.|.+
T Consensus 21 yeVEkIld~r~~~g----------------~~~YlVKWkGy~~~~nTWEP~enL~~-----~---~lI~~F~~ 69 (72)
T 1pdq_A 21 YAAEKIIQKRVKKG----------------VVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHC-
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEECCCCCccCeecchHHCCC-----H---HHHHHHHH
Confidence 46899999886321 27999999999999999999999864 2 25677754
No 170
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.17 E-value=3.8e-07 Score=71.50 Aligned_cols=41 Identities=24% Similarity=0.696 Sum_probs=32.9
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHH
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
..|++|++.|..... ..+|||||+|+++.+|||+|+++|.+
T Consensus 8 y~VE~Il~~r~~~g~---------------~~~YlVkWkGy~~~~~TWEp~~nl~~ 48 (61)
T 3g7l_A 8 YEVEDILADRVNKNG---------------INEYYIKWAGYDWYDNTWEPEQNLFG 48 (61)
T ss_dssp EEEEEEEEEEECTTS---------------CEEEEEEETTSCGGGCEEEEGGGGTB
T ss_pred EEEEEEEEEEEECCC---------------EEEEEEEEeCCCCcCCceeeHhHCCC
Confidence 457899998764311 14999999999999999999999864
No 171
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=98.15 E-value=4.9e-07 Score=72.55 Aligned_cols=48 Identities=31% Similarity=0.783 Sum_probs=41.3
Q ss_pred ccccccccc--cCCceeecCCCCCcccccccCCC------------CCCCCCCCcccCccCC
Q 002937 50 KDDSCQACG--ESENLMSCDTCTYAYHAKCLVPP------------LKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~--~~~~l~~C~~C~~~~H~~Cl~p~------------~~~~p~~~W~C~~C~~ 97 (864)
+++.|.+|. ..++++.|..|+|.||..||.++ +...++..|.|+.|.+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 668899999 67789999999999999999986 3445678899999964
No 172
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.14 E-value=1.7e-06 Score=101.67 Aligned_cols=84 Identities=25% Similarity=0.283 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHc--CCCeE
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMNV 361 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~--p~~~~ 361 (864)
++||+|.+.+.-+......++++++...||+|||+..+..+.........+++|++|+ ++..|+.+++.++. ..+++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 5799999999877777788999999999999999987554433332233589999995 56688999988765 36777
Q ss_pred EEEecCh
Q 002937 362 VMYVGTS 368 (864)
Q Consensus 362 ~~~~g~~ 368 (864)
+...|..
T Consensus 83 ~~l~gr~ 89 (620)
T 4a15_A 83 IPMQGRV 89 (620)
T ss_dssp EECCCHH
T ss_pred EEEECCC
Confidence 7776644
No 173
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.13 E-value=4.5e-07 Score=73.91 Aligned_cols=52 Identities=31% Similarity=0.560 Sum_probs=40.8
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (864)
..|++||+.|.... ..+|||||+|+++.+|||+|+++|.+ + ..++.|.++..
T Consensus 14 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nL~~-----~---~li~~f~~~~~ 65 (73)
T 1ap0_A 14 YVVEKVLDRRVVKG----------------KVEYLLKWKGFSDEDNTWEPEENLDC-----P---DLIAEFLQSQK 65 (73)
T ss_dssp CEEEEEEEEEECSS----------------SEEEEEEEESSSSCCCEEEETTTCCC-----H---HHHHHHTTTTT
T ss_pred EEEEEEEEEEEeCC----------------eEEEEEEECCCCCccCcEeeHHHCCC-----H---HHHHHHHHHhh
Confidence 46899999986421 27999999999999999999999843 2 36788876543
No 174
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=98.13 E-value=4.6e-07 Score=74.11 Aligned_cols=51 Identities=29% Similarity=0.507 Sum_probs=39.8
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (864)
..|++|++.|.... ..+|||||+|+++.+|||+|+++|.+. ..++.|..+.
T Consensus 14 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~~L~~~--------~li~~f~~~~ 64 (74)
T 2kvm_A 14 FAVESIRKKRVRKG----------------KVEYLVKWKGWPPKYSTWEPEEHILDP--------RLVMAYEEKE 64 (74)
T ss_dssp CCEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEETTTCSCH--------HHHHHHHHHH
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEEcCCCCccCeEeeHHHCCCH--------HHHHHHHHHh
Confidence 47899999886421 279999999999999999999998642 3677776543
No 175
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=98.13 E-value=7.7e-07 Score=69.72 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=39.4
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (864)
..|++|++.|..+. ...+|||||+|++|-+|||++++ + ..|.+...++.|..
T Consensus 12 ~~VeRIi~~r~~~~---------------g~~eYLVKWkgl~y~e~TWE~~~-~-----~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 12 MMIHRILNHSVDKK---------------GHVHYLIKWRDLPYDQASWESED-V-----EIQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCCEEEECTT---------------CCEEEEECCTTSCTTTCEEEETT-C-----CCTTHHHHHHHHHH
T ss_pred EEEEEEEEEEecCC---------------CCEEEEEEEcCCCcccCcccCCc-c-----cCcchHHHHHHHHh
Confidence 35789999875321 13799999999999999999987 3 24666677787764
No 176
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=98.06 E-value=8.9e-07 Score=73.21 Aligned_cols=54 Identities=26% Similarity=0.588 Sum_probs=40.8
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (864)
..|++||+.|.... ...+|||||+|+++.+|||+|+++|.. ++ ..++.|.++..
T Consensus 14 y~VE~Il~~r~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~~l~~----~~---~li~~f~~~~~ 67 (78)
T 2dnt_A 14 YEVERIVDKRKNKK---------------GKTEYLVRWKGYDSEDDTWEPEQHLVN----CE---EYIHDFNRRHT 67 (78)
T ss_dssp CCCCCEEEEEECTT---------------SCEEEEECBTTBCGGGCEEEETTTCTT----CH---HHHHHHHHHHS
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEECCCCccCCceecHHHHHh----HH---HHHHHHHhhhh
Confidence 57899999875321 127999999999999999999998741 22 36788877654
No 177
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=1.7e-06 Score=69.63 Aligned_cols=45 Identities=29% Similarity=0.867 Sum_probs=36.8
Q ss_pred cccccccccc--CCceeecCCCC---CcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~C~---~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
...+|. |++ .|.||.||.|+ ..||..|+ .+...|.+.|+||.|..
T Consensus 5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHH
T ss_pred CCeEEE-cCCCCCCCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCc
Confidence 346775 875 35799999975 79999999 67778899999999974
No 178
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.98 E-value=8.5e-07 Score=79.50 Aligned_cols=45 Identities=36% Similarity=0.753 Sum_probs=37.2
Q ss_pred ccccccccC----------CceeecCCCCCcccccccCCCCC---CCCCCCcccCccC
Q 002937 52 DSCQACGES----------ENLMSCDTCTYAYHAKCLVPPLK---APPSGSWRCPECV 96 (864)
Q Consensus 52 ~~C~~C~~~----------~~l~~C~~C~~~~H~~Cl~p~~~---~~p~~~W~C~~C~ 96 (864)
++|.+|..+ ++|+.|+.|+++||..|+.++.. .+|.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468888754 36999999999999999987643 4678999999995
No 179
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.97 E-value=3.4e-06 Score=67.53 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=37.8
Q ss_pred ccccccccccccCC---ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 48 DAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+.+..+| +|+.+. .||.||.|...||..|+......+| +.|+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 3445678 898653 4999999999999999976655454 6999999975
No 180
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=97.92 E-value=1.5e-06 Score=65.94 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=34.0
Q ss_pred ccccccccccccCccCCCCcccccccchhhe-eeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVK-QYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~-eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.|++||+.|.... ... +|||||+|+ .+|||+|+++|. + ..++.|.++
T Consensus 2 ~VE~Ild~r~~~~---------------g~~~~YlVKWkgy--~~~TWEp~~nL~------~---~li~~f~~~ 49 (54)
T 1x3p_A 2 VAESVIGKRVGDD---------------GKTIEYLVKWTDM--SDATWEPQDNVD------S---TLVLLYQQQ 49 (54)
T ss_dssp CSSCCCCBSSCSS---------------SCCCCBCCCCSSS--SSCSCSTTCCSS------S---SSHHHHTSS
T ss_pred eEEEEEEEEEcCC---------------CcEEEEEEEECCC--CcCCccchHHCC------H---HHHHHHHHH
Confidence 4789999886431 014 899999996 689999999874 2 246777654
No 181
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=97.89 E-value=5.3e-06 Score=70.61 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=40.2
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCcc-ccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSY-LHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~-~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (864)
..|++||+.|+.+.. ...+|||||+|++. .++||+|+++|. .++ ..|+.|.++..
T Consensus 31 y~VE~Il~~r~~~~~--------------g~~~YlVkWkGy~~~~~~TWEP~~nl~----~c~---~li~~f~~~~~ 86 (92)
T 2rso_A 31 YVVEKVLKHRMARKG--------------GGYEYLLKWEGYDDPSDNTWSSEADCS----GCK---QLIEAYWNEHG 86 (92)
T ss_dssp CCEEEEEEEEECTTS--------------SCEEEEEEETTCCCCTTSEEECGGGGG----TSH---HHHHHHHHHHT
T ss_pred EEEEEEEEEEeecCC--------------CEEEEEEEEccCCCcccCccccHHHHh----hHH---HHHHHHHHHcC
Confidence 468999998752210 12799999999985 779999999984 123 36788887654
No 182
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.82 E-value=6.6e-06 Score=65.42 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=38.1
Q ss_pred cccccccccccC----CceeecCCCCCcccccccCCCCCCCC-CCCcccCccCCC
Q 002937 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~ 98 (864)
++..+|.+|++. +.++.||.|...||..|+........ .+.|+|+.|...
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345789999865 44999999999999999954433322 378999999753
No 183
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.78 E-value=4.9e-06 Score=68.96 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=32.0
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHH
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
..|++||+.|.... ...+|||||+|+++.+|||+|+++|.
T Consensus 24 yeVE~Ild~R~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 24 YEVERIVDKRKNKK---------------GKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp EEEEEEEEEEECTT---------------SCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred EEEEEEEEeEECCC---------------CeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 46899999874221 12789999999999999999999873
No 184
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.67 E-value=1.1e-05 Score=65.69 Aligned_cols=48 Identities=21% Similarity=0.588 Sum_probs=36.9
Q ss_pred cccccccccccC---C-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 49 AKDDSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 49 ~~~~~C~~C~~~---~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
....+| +|+.. | .||.||.|...||..|+...........|+|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344678 59865 3 399999999999999996554333458999999974
No 185
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.66 E-value=5.1e-06 Score=65.72 Aligned_cols=45 Identities=22% Similarity=0.702 Sum_probs=36.1
Q ss_pred ccccccccccCC----ceeecC-CCCCcccccccCCCCCC--------CCCCCcccCccC
Q 002937 50 KDDSCQACGESE----NLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECV 96 (864)
Q Consensus 50 ~~~~C~~C~~~~----~l~~C~-~C~~~~H~~Cl~p~~~~--------~p~~~W~C~~C~ 96 (864)
....|.+|+++- .++.|| .|...||..|+ .++. .|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 346799999762 399999 99999999999 5544 477899999996
No 186
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.65 E-value=5.2e-06 Score=74.15 Aligned_cols=45 Identities=33% Similarity=0.695 Sum_probs=35.9
Q ss_pred cccccccc---------CCceeecCCCCCcccccccCC--CC-CCCCCCCcccCccC
Q 002937 52 DSCQACGE---------SENLMSCDTCTYAYHAKCLVP--PL-KAPPSGSWRCPECV 96 (864)
Q Consensus 52 ~~C~~C~~---------~~~l~~C~~C~~~~H~~Cl~p--~~-~~~p~~~W~C~~C~ 96 (864)
.+|.+|.. +++||.|+.|++.||..|+.. ++ ..++.+.|+|+.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 56888854 346999999999999999964 22 34678999999996
No 187
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.57 E-value=1.5e-05 Score=69.80 Aligned_cols=45 Identities=24% Similarity=0.784 Sum_probs=37.1
Q ss_pred ccccccccC----CceeecC-CCCCcccccccCCCCCC--------CCCCCcccCccCCC
Q 002937 52 DSCQACGES----ENLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECVSP 98 (864)
Q Consensus 52 ~~C~~C~~~----~~l~~C~-~C~~~~H~~Cl~p~~~~--------~p~~~W~C~~C~~~ 98 (864)
..|.+|+++ +.++.|| .|...||..|+ .++. .|.+.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCc
Confidence 569999977 4599998 99999999999 5543 46789999999853
No 188
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.56 E-value=7.5e-06 Score=79.71 Aligned_cols=49 Identities=24% Similarity=0.621 Sum_probs=36.5
Q ss_pred ccccccccccccC----CceeecCCCCCcccccccCCCCCC-CCCCCcccCccCC
Q 002937 48 DAKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (864)
Q Consensus 48 ~~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~-~p~~~W~C~~C~~ 97 (864)
+.+..+| +|+.+ +.++.||.|+++||..|+...... .+.+.|+|+.|..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3456789 99975 349999999999999999543221 2367999999974
No 189
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.51 E-value=7.6e-06 Score=67.50 Aligned_cols=46 Identities=22% Similarity=0.691 Sum_probs=35.7
Q ss_pred ccccccccccC---CceeecCCCCCcccccccCCCCCCC-------CCCCcccCccCCC
Q 002937 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAP-------PSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~-------p~~~W~C~~C~~~ 98 (864)
+..+| +|++. +.|+.||.|...||..|+. +... +...|+|+.|...
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg--l~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG--ISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS--CCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc--cchhhhhhccCCCCeEECcCCcCc
Confidence 34678 79875 4599999999999999994 4332 3578999999753
No 190
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.45 E-value=3.7e-05 Score=63.84 Aligned_cols=49 Identities=18% Similarity=0.573 Sum_probs=35.8
Q ss_pred ccccccccccC----CceeecCCCCCcccccccCCCCCCC-CCCCcccCccCCCC
Q 002937 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~~ 99 (864)
...+| +|+.. +.||.||.|...||..|+.-..... ..+.|+|+.|....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 78875 4499999999999999994322211 13689999998654
No 191
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.39 E-value=3.8e-05 Score=63.47 Aligned_cols=45 Identities=29% Similarity=0.749 Sum_probs=35.3
Q ss_pred ccccccccccC---CceeecC--CCCCcccccccCCCCCCCC-------CCCcccCccCC
Q 002937 50 KDDSCQACGES---ENLMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~--~C~~~~H~~Cl~p~~~~~p-------~~~W~C~~C~~ 97 (864)
...+| +|+.. |.|+.|| .|...||..|+ .+...+ ...|+|+.|..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCc
Confidence 34678 69875 5599999 99999999999 444433 36899999975
No 192
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.34 E-value=0.0014 Score=74.13 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~-~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~ 346 (864)
..|.+-|.+++..+......+. ..+|....|+|||..+.+++..+...+..++++++|.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 4799999999987755544444 78889999999999998888888877666899999986654
No 193
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=97.29 E-value=7.8e-05 Score=65.06 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred ccchhhhH------hhhhcCCccceeeeeeccccccccccccCCCCCc----cHHHHHHHHH
Q 002937 190 EWTTVDRI------LACRGEDDEKEYLVKYKELSYDECYWEYESDISA----FQPEIERFIK 241 (864)
Q Consensus 190 ~~~~verI------i~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~----~~~~i~~~~~ 241 (864)
....||+| ++.|...|..+|||||+|.++.++|||++..+.. ....++.|.+
T Consensus 35 ~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~k 96 (115)
T 2b2y_C 35 TIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKK 96 (115)
T ss_dssp SHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC
T ss_pred ceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHH
Confidence 34678886 8888888999999999999999999999765421 1235666654
No 194
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.26 E-value=0.0014 Score=77.47 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc-HHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl-l~qW~~E~~~~ 355 (864)
..|-+.|.+||.... ....-.|+.-++|+|||.+.+.++..+...+ .++||++|++. +.+...-+...
T Consensus 188 ~~LN~~Q~~AV~~al---~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFAL---SQKELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHH---HCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh---cCCCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEcCchHHHHHHHHHHHhc
Confidence 579999999997653 3344578888999999999999998887754 48999999644 45555555543
No 195
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.24 E-value=0.0014 Score=75.90 Aligned_cols=132 Identities=21% Similarity=0.165 Sum_probs=83.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHcCCCeEE
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~~~ 362 (864)
+..|.+.|.+++..+ ..++..++.-..|+|||.++.+++..+...+ .++++++|+........+.. .....
T Consensus 187 ~~~L~~~Q~~Av~~~----~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~----~~~a~ 257 (574)
T 3e1s_A 187 RKGLSEEQASVLDQL----AGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVT----GRTAS 257 (574)
T ss_dssp TTTCCHHHHHHHHHH----TTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHH----TSCEE
T ss_pred cCCCCHHHHHHHHHH----HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhh----cccHH
Confidence 467899999999876 3567788999999999998888777766543 58999999876665444421 11111
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccC
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn 442 (864)
.++ +-..+ .. . .+ ....-...++++|||||+|.+-.
T Consensus 258 Tih---------~ll~~-------------------------~~-~-------~~--~~~~~~~~~~dvlIIDEasml~~ 293 (574)
T 3e1s_A 258 TVH---------RLLGY-------------------------GP-Q-------GF--RHNHLEPAPYDLLIVDEVSMMGD 293 (574)
T ss_dssp EHH---------HHTTE-------------------------ET-T-------EE--SCSSSSCCSCSEEEECCGGGCCH
T ss_pred HHH---------HHHcC-------------------------Cc-c-------hh--hhhhcccccCCEEEEcCccCCCH
Confidence 100 00000 00 0 00 00111234688999999998753
Q ss_pred cccHHHHHHHhcccccEEEeecCCCCC
Q 002937 443 KDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (864)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTP~~n 469 (864)
......+..+....+++|.|-|-|.
T Consensus 294 --~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 294 --ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp --HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred --HHHHHHHHhCcCCCEEEEEeccccc
Confidence 2344445556677899999999774
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.22 E-value=0.0022 Score=75.41 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p~~~~~ 362 (864)
..|.+.|.+++..+. .+.-.++.-.+|+|||.++..++..+......++|+++|.+.. .+-...+... +.+++
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~ 252 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 252 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc--CCeEE
Confidence 368999999997653 3456788889999999999888888876555699999997655 4444445443 23333
Q ss_pred EEecChHH------------HHHHHHhhhcCCCCch--hh--hcccCCcc-------cc-----ccccccCCCcEEEccH
Q 002937 363 MYVGTSQA------------RNIIREYEFYFPKNPK--KV--KKKKSGQV-------VS-----ESKQDRIKFDVLLTSY 414 (864)
Q Consensus 363 ~~~g~~~~------------r~~i~~~e~~~~~~~~--~~--~~~~~~~~-------~~-----~~~~~~~~~~vvitty 414 (864)
-. |.... ...++.. ..... +. .+...+.. .. ....-....+|+++|.
T Consensus 253 R~-~~~~r~~~~~~~~~~tl~~~~~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~ 327 (624)
T 2gk6_A 253 RL-CAKSREAIDSPVSFLALHNQIRNM----DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC 327 (624)
T ss_dssp EC-CCTGGGSCCCTTTTTBHHHHHTSC----SSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEET
T ss_pred ee-ccccchhhccchhhhhHHHHHHhc----cchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 22 22110 0000000 00000 00 00000000 00 0000113467888887
Q ss_pred HHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCC
Q 002937 415 EMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (864)
Q Consensus 415 ~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n 469 (864)
..+.. ..+....|++||||||....... ..+..+....+++|-|=|.|-
T Consensus 328 ~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 328 VGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GGGGC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhhcc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 65432 34566789999999997654332 112222345689999998764
No 197
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=97.20 E-value=0.00022 Score=69.43 Aligned_cols=54 Identities=19% Similarity=0.519 Sum_probs=38.7
Q ss_pred ccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 002937 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (864)
Q Consensus 101 ~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (864)
.+++|++.|..+.. ....+|||||+|++|-+|||+|++.+.. .....++.|..+
T Consensus 132 ~VErIi~~r~~~~~-------------~g~~~yLVKWkgl~Y~e~TWE~~~~i~~------~~~~~I~~f~~R 185 (187)
T 2b2y_A 132 IVGRIIAHSNQKSA-------------AGYPDYYCKWQGLPYSECSWEDGALISK------KFQACIDEYFSR 185 (187)
T ss_dssp SEEEEEEEEEEECT-------------TSCEEEEEEETTSCGGGCEEECHHHHHH------HHHHHHHHHHHT
T ss_pred eeEEEEEeeeecCC-------------CCcEEEEEEECCCChhhCcccchhhhhh------hHHHHHHHHHhh
Confidence 56888887643211 1247999999999999999999987742 223467888765
No 198
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.19 E-value=0.00014 Score=58.26 Aligned_cols=42 Identities=21% Similarity=0.766 Sum_probs=31.2
Q ss_pred ccccccccC---CceeecCC--CCCcccccccCCCCCCCC------CCCcccCccC
Q 002937 52 DSCQACGES---ENLMSCDT--CTYAYHAKCLVPPLKAPP------SGSWRCPECV 96 (864)
Q Consensus 52 ~~C~~C~~~---~~l~~C~~--C~~~~H~~Cl~p~~~~~p------~~~W~C~~C~ 96 (864)
..| +|+.. |.|+.||. |...||..|+. +...| ...|+|+.|+
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCcc
Confidence 567 68754 56999995 99999999994 32222 2479999996
No 199
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.11 E-value=7.1e-05 Score=56.50 Aligned_cols=41 Identities=22% Similarity=0.649 Sum_probs=30.9
Q ss_pred ccccccC----CceeecC-CCCCcccccccCCCCCCCC--CCCcccCccC
Q 002937 54 CQACGES----ENLMSCD-TCTYAYHAKCLVPPLKAPP--SGSWRCPECV 96 (864)
Q Consensus 54 C~~C~~~----~~l~~C~-~C~~~~H~~Cl~p~~~~~p--~~~W~C~~C~ 96 (864)
|.+|+++ +.++.|| .|...||..|+ .++..+ .+.|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 5667754 2399999 89999999999 444322 4889999994
No 200
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.10 E-value=0.004 Score=74.96 Aligned_cols=169 Identities=18% Similarity=0.258 Sum_probs=94.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHH-HHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~-qW~~E~~~~~p~~~~~ 362 (864)
..|.+.|.+++..+. .+.-.++.-..|+|||.++..++..+......++|+++|..... +-...+... +.+++
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vv 428 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 428 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh--CcceE
Confidence 468999999997653 34567889999999999998888888765556999999976553 333334432 23333
Q ss_pred EEecChHH------------HHHHHHhhhcCCCCch--hhh--cccCCccc-------cc-----cccccCCCcEEEccH
Q 002937 363 MYVGTSQA------------RNIIREYEFYFPKNPK--KVK--KKKSGQVV-------SE-----SKQDRIKFDVLLTSY 414 (864)
Q Consensus 363 ~~~g~~~~------------r~~i~~~e~~~~~~~~--~~~--~~~~~~~~-------~~-----~~~~~~~~~vvitty 414 (864)
-+ |.... ...+... ..... +.. +...+... .. ...-....+|+++|.
T Consensus 429 Rl-g~~~r~~i~~~~~~~tlh~~~~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~ 503 (800)
T 2wjy_A 429 RL-CAKSREAIDSPVSFLALHNQIRNM----DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC 503 (800)
T ss_dssp EC-CCGGGGGCCCTTGGGBHHHHHHTC----TTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEET
T ss_pred ee-cccchhhhcchhhhhhHHHHHHcC----ccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEch
Confidence 22 22110 0001100 00000 000 00000000 00 000112467888887
Q ss_pred HHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCC
Q 002937 415 EMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (864)
Q Consensus 415 ~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n 469 (864)
..+.. ..+....|++||||||....... ..+..+....+++|-|=|.|-
T Consensus 504 ~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 504 VGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 66542 33556789999999997654322 122223345689999998763
No 201
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.06 E-value=0.00012 Score=60.04 Aligned_cols=48 Identities=23% Similarity=0.669 Sum_probs=34.9
Q ss_pred ccccccccccC----CceeecCCCCCcccccccCCCCCCCCC-CCcccCccCCC
Q 002937 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPS-GSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~p~-~~W~C~~C~~~ 98 (864)
...+| +|+.+ +.||.||.|...||..|+.-.....+. +.|+|+.|...
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34556 68864 359999999999999999544333332 67999999753
No 202
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=97.02 E-value=0.00021 Score=68.89 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=38.1
Q ss_pred cccccccccccccCccCCCCcccccccchhheeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHHh
Q 002937 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (864)
Q Consensus 100 ~~~~kil~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (864)
..+++|++.|...... .....+|||||+|++|-+|||+|++.+... ++ ..++.|..
T Consensus 121 ~~VErIi~~r~~~~~~-----------~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~---~~---~~I~~y~~ 176 (177)
T 2h1e_A 121 HVPERIIDSQRASLED-----------GTSQLQYLVKWRRLNYDEATWENATDIVKL---AP---EQVKHFQK 176 (177)
T ss_dssp TSEEEEEEEEEEECTT-----------SCEEEEEEEEETTSCSTTCEEEEHHHHHHH---CH---HHHHHHTC
T ss_pred ceeEEEEEEeeecccC-----------CCCcEEEEEEeCCCCcccccccChHHhhhh---HH---HHHHHHHh
Confidence 4678888886422110 123489999999999999999999987521 22 35666653
No 203
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.00 E-value=0.00022 Score=53.80 Aligned_cols=43 Identities=21% Similarity=0.618 Sum_probs=33.0
Q ss_pred cccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 53 SCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 53 ~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+| +|+.+ +.|+.||.|...||..|+.......| +.|+|+.|..
T Consensus 6 ~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp CS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred EE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 44 46654 46999999999999999965544444 7999999964
No 204
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0045 Score=74.59 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=93.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH-HHHHHHHHHHcCCCeEE
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll-~qW~~E~~~~~p~~~~~ 362 (864)
..|.+.|.++|..+. .+.-.++....|+|||.++..++..+......++||++|.+.. .+-...+... +.+++
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~--g~~il 432 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL--GLKVV 432 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT--TCCEE
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh--CccEE
Confidence 468999999997662 3455788889999999998888887765444699999997655 4444445543 23333
Q ss_pred EEecChHH------------HHHHHHhhhcCCCCc-hhhh--cccCCcc-------cc-----ccccccCCCcEEEccHH
Q 002937 363 MYVGTSQA------------RNIIREYEFYFPKNP-KKVK--KKKSGQV-------VS-----ESKQDRIKFDVLLTSYE 415 (864)
Q Consensus 363 ~~~g~~~~------------r~~i~~~e~~~~~~~-~~~~--~~~~~~~-------~~-----~~~~~~~~~~vvitty~ 415 (864)
-. |.... ...++. ..... .+.. +...+.. +. .........+|+++|..
T Consensus 433 R~-g~~~r~~i~~~~~~~tl~~~~~~----~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~ 507 (802)
T 2xzl_A 433 RL-TAKSREDVESSVSNLALHNLVGR----GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCV 507 (802)
T ss_dssp EC-CCGGGTTSCCTTGGGBHHHHHHT----TCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETT
T ss_pred ee-cccchhhhcchhhhhhHHHHHHh----hcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechh
Confidence 22 22110 000000 00000 0000 0000000 00 00011124678888876
Q ss_pred HHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecCCCCC
Q 002937 416 MINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (864)
Q Consensus 416 ~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgTP~~n 469 (864)
.+.. ..+.. .|++||||||+.+.... ..+..+....+++|-|=|.|-
T Consensus 508 ~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 508 GAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp GGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 6542 23444 89999999998764321 122223345689999998763
No 205
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.72 E-value=0.0068 Score=70.90 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--C-CCceEEEeccccHHHHH-HHHHHHcCCCeEE
Q 002937 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--R-ISPHLVVAPLSTLRNWE-REFATWAPQMNVV 362 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~--~-~~~~LIV~P~sll~qW~-~E~~~~~p~~~~~ 362 (864)
-+.|..++.-+ ..++..++.-.+|+|||.++..++..+... . ..++++++|......-. ..+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~----l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l- 225 (608)
T 1w36_D 151 INWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL- 225 (608)
T ss_dssp CCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC-
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC-
Confidence 57899998765 356788999999999998877777766532 2 23899999976664433 333322100000
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccC
Q 002937 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (864)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn 442 (864)
..... . .. .. ....-..++-.+..............+++++|||||+.+.
T Consensus 226 -------------------~~~~~---~----~~-~~--~~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~- 275 (608)
T 1w36_D 226 -------------------TDEQK---K----RI-PE--DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID- 275 (608)
T ss_dssp -------------------CSCCC---C----SC-SC--CCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB-
T ss_pred -------------------CHHHH---h----cc-ch--hhhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC-
Confidence 00000 0 00 00 0000000110111100000111123378999999999664
Q ss_pred cccHHHHHHHhcccccEEEeecCCCCCCHh
Q 002937 443 KDSKLFSSLKQYSTRHRVLLTGTPLQNNLD 472 (864)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTP~~n~~~ 472 (864)
.......+..+....+++|.|-|-|-.+.
T Consensus 276 -~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 276 -LPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp -HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred -HHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 23345556667778899999998776543
No 206
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.54 E-value=0.00033 Score=78.63 Aligned_cols=49 Identities=20% Similarity=0.651 Sum_probs=36.6
Q ss_pred ccccccccccccC----CceeecCCCCCcccccccCCCCCCCCC---CCcccCccCCCC
Q 002937 48 DAKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPS---GSWRCPECVSPL 99 (864)
Q Consensus 48 ~~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~p~---~~W~C~~C~~~~ 99 (864)
+....+| +|+.. +.|+.||.|...||..|+ .+...+. +.|+|+.|....
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCCc
Confidence 3445667 78864 449999999999999999 4444432 679999998643
No 207
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.42 E-value=0.072 Score=62.83 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccccH-HHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL-RNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~sll-~qW~~E~~~~~ 356 (864)
.|.+.|.++|. ...+..++-...|+|||.+.+.-+.++.... +..+|+++++... .+..+.+....
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 68899999985 3355667777899999999999888887652 3479999986554 44555565553
No 208
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.10 E-value=0.016 Score=63.26 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCCCceEEEeccccH-HHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERISPHLVVAPLSTL-RNWEREFATW 355 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l-~~~~~~~~LIV~P~sll-~qW~~E~~~~ 355 (864)
..|.|||...+..+. ..+..++.-.-+.|||..+.+++.+. .......+++++|..-. ..+.+.+..+
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 479999999887662 23457788889999998876666553 33333478999996432 2233555544
No 209
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.10 E-value=0.002 Score=71.42 Aligned_cols=37 Identities=27% Similarity=0.553 Sum_probs=28.3
Q ss_pred ceeecCCCCCcccccccCCCCCCC-CCCCcccCccCCC
Q 002937 62 NLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 98 (864)
Q Consensus 62 ~l~~C~~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~ 98 (864)
.++.||.|...||..|+.-..... .-+.|+||.|...
T Consensus 57 ~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 57 QWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp SEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 399999999999999994332222 2378999999853
No 210
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.93 E-value=0.0019 Score=62.31 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=35.2
Q ss_pred ccccccccC---C----ceeecCCCCCcccccccCCCCC------CCCC-CCcccCccCCCCc
Q 002937 52 DSCQACGES---E----NLMSCDTCTYAYHAKCLVPPLK------APPS-GSWRCPECVSPLN 100 (864)
Q Consensus 52 ~~C~~C~~~---~----~l~~C~~C~~~~H~~Cl~p~~~------~~p~-~~W~C~~C~~~~~ 100 (864)
.+|.+|++. + .++.||.|...||..|....-. ..|+ ..|+||.|....+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 468888753 3 3999999999999999943211 1232 4899999987544
No 211
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.001 Score=80.75 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.4
Q ss_pred chhhhHhhhhcC-------------------CccceeeeeeccccccccccccCCCCC
Q 002937 192 TTVDRILACRGE-------------------DDEKEYLVKYKELSYDECYWEYESDIS 230 (864)
Q Consensus 192 ~~verIi~~~~~-------------------~~~~~ylVKW~~l~y~~~tWe~~~~~~ 230 (864)
..||+||++|-. .+..+|||||+|.+|.+||||+++.+.
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHh
Confidence 478999999966 456799999999999999999887553
No 212
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=95.79 E-value=0.0011 Score=52.27 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.8
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccc
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWE 224 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe 224 (864)
+++|+|++.+..+|..+|||||+|..--+..|.
T Consensus 13 le~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa 45 (65)
T 3kup_A 13 LDPERIIGATDSSGELMFLMKWKDSDEADLVLA 45 (65)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCCEEEEH
T ss_pred CCeeEEeeEEcCCCcEEEEEEECCCChhheEEH
Confidence 689999999999999999999999766554443
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.74 E-value=0.026 Score=55.03 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=27.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
.-.++.-+||.|||..++..+..+...+ .+++++.|.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 3456788999999999888777665443 478888876
No 214
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.60 E-value=0.0033 Score=58.23 Aligned_cols=62 Identities=16% Similarity=0.453 Sum_probs=48.0
Q ss_pred ccccccccccccccCCceeecC--CCCCcccccccCCCCCC------CCCCCcccCccCCCCcccccccccc
Q 002937 46 RIDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVSPLNDIDKILDCE 109 (864)
Q Consensus 46 ~~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~~~~------~p~~~W~C~~C~~~~~~~~kil~~r 109 (864)
++|+...+|..|+.||+|+.|+ .|.++|=..|+.--+.. .....|.|--|.- .+...+|.+|
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P--~~l~~ll~~R 143 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH--KGTYGLLRRR 143 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS--SCEETTEEBC
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC--ccHHHHhhhh
Confidence 4566778999999999999999 89999999998654433 4467899999984 3445555544
No 215
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.36 E-value=0.037 Score=64.54 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=45.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecccc-HHHHHHHHHHHc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLST-LRNWEREFATWA 356 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~sl-l~qW~~E~~~~~ 356 (864)
..|.|||...+..+ + ..+..++.-.-|.|||..+.+++........+ .+++++|..- .......+..+.
T Consensus 162 ~~l~p~Q~~i~~~l---~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 162 VQLRDYQRDMLKIM---S-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCCHHHHHHHHHH---H-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhh---c-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 57999999987755 2 24557778899999998765555444333333 8899999533 233445555554
No 216
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.25 E-value=0.16 Score=50.92 Aligned_cols=39 Identities=26% Similarity=0.089 Sum_probs=29.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
.+.-.++.-+||.|||..++.++..+...+ .+++++.|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEEec
Confidence 344456788999999999988887775543 377888774
No 217
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.16 E-value=0.15 Score=54.61 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 286 L~~yQ~~~v~~l~~~~~~~~---~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
++|+|.+.+..+...+.+++ ..++.-+.|+|||..|.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 67999999988877766654 36889999999999999999988654
No 218
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=94.93 E-value=0.011 Score=51.39 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=32.8
Q ss_pred ccccccCCceeecCCCCCcccccccCCCCCCCCCCCccc
Q 002937 54 CQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRC 92 (864)
Q Consensus 54 C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C 92 (864)
|.+|++... +.|..|+.+||..|+.++|...+.+.|+|
T Consensus 61 C~~C~k~~~-~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSAAV-SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CTTTCSBCC-EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCCCC-cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 445665554 89999999999999999999999999998
No 219
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=94.89 E-value=0.009 Score=53.54 Aligned_cols=35 Identities=31% Similarity=0.755 Sum_probs=28.6
Q ss_pred eeecCCCCCcccccccCCCCCCCCC----CCcccCccCC
Q 002937 63 LMSCDTCTYAYHAKCLVPPLKAPPS----GSWRCPECVS 97 (864)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~~~~~p~----~~W~C~~C~~ 97 (864)
|+.|+.|+..||..|+.++....+. +.|.||.|..
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 8999999999999999887654433 3499999985
No 220
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.88 E-value=0.09 Score=52.04 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=26.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
++.-+||.|||..++..+......+ .++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g-~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK-QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEecc
Confidence 4788999999999888877664443 4888888853
No 221
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=94.79 E-value=0.0026 Score=51.54 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=36.1
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCC-ccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~-~~~~~i~~~~~ 241 (864)
++||+||+.+..+|..+|||||+|. ++++|.....+. .+++.+-+|..
T Consensus 16 l~~ekI~g~~~~~Gel~fLvkWkg~--d~~dlVpa~~a~~k~Pq~VI~FYE 64 (74)
T 2fmm_A 16 LEPERIIGATDSSGELMFLMKWKNS--DEADLVPAKEANVKCPQVVISFYE 64 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTC--SCCEEEEHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEEEcCCCcEEEEEEECCC--CcccEEEHHHHhhhChHHHHHHHH
Confidence 6899999999989999999999994 558888765442 34555555543
No 222
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.70 E-value=0.041 Score=60.74 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=66.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc-ccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCc
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNP 385 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~~~~~~g~~~~r~~i~~~e~~~~~~~ 385 (864)
.++....|.|||......+. ..+.||++|. .+...|.+.+.+...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~---------------------------- 209 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASGI---------------------------- 209 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTSC----------------------------
T ss_pred EEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcCc----------------------------
Confidence 46778999999986654432 1578999996 444667776632100
Q ss_pred hhhhcccCCccccccccccCCCcEEEccHHHHHhcccccCCcceeEEEecccccccCcccHHHHHHHhcccccEEEeecC
Q 002937 386 KKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGT 465 (864)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~vvitty~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rllLTgT 465 (864)
...-+.-+.|++.+...........+++|||||+..+- ...+...+..+.. .+++|.|=
T Consensus 210 ------------------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 210 ------------------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ------------------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEEC
T ss_pred ------------------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecC
Confidence 00011235677776554444444568999999998552 2333333333344 89999999
Q ss_pred CCCC
Q 002937 466 PLQN 469 (864)
Q Consensus 466 P~~n 469 (864)
|-|-
T Consensus 269 ~~Ql 272 (446)
T 3vkw_A 269 TQQI 272 (446)
T ss_dssp TTSC
T ss_pred cccc
Confidence 8654
No 223
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=94.50 E-value=0.0036 Score=69.10 Aligned_cols=43 Identities=21% Similarity=0.621 Sum_probs=32.7
Q ss_pred ccccccC----CceeecCCCCCcccccccCCCCCCCC---CCCcccCccCCC
Q 002937 54 CQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP---SGSWRCPECVSP 98 (864)
Q Consensus 54 C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~p---~~~W~C~~C~~~ 98 (864)
+.+|+++ +.|+.||.|...||..|+ .+...+ .+.|+|+.|...
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccc
Confidence 3368764 559999999999999999 444332 267999999853
No 224
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=94.43 E-value=0.0024 Score=51.55 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=24.2
Q ss_pred chhhhHhhhhcCCccceeeeeecccccccccc
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYW 223 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tW 223 (864)
++||+|++....+|...|||||+|..--+..+
T Consensus 23 le~EkIlg~t~~~Gel~fLVKWKg~~e~dlVp 54 (75)
T 3i3c_A 23 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVL 54 (75)
T ss_dssp CCEEEEEEEEC---CCEEEEEETTSSCEEEEE
T ss_pred CCeeEEeeEEccCCcEEEEEEECCCChhceEE
Confidence 68999999999999999999999976544444
No 225
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.39 E-value=0.096 Score=61.23 Aligned_cols=79 Identities=11% Similarity=0.199 Sum_probs=50.5
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeec--cccccCcCCC--CCC
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST--RAGGLGINLA--TAD 697 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst--~a~~~GinL~--~a~ 697 (864)
..+..+|||..+...++.+.+.|. .+... ...+++..+|..++++|. +.+. +|+++ ...+||||++ .+.
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC--------CCCC
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCceeccccCCCCceE
Confidence 346678999998888888888776 23322 333444678999999998 3332 46665 4889999998 478
Q ss_pred EEEEeCCCCC
Q 002937 698 TVIIYDSDWN 707 (864)
Q Consensus 698 ~VI~~d~~wn 707 (864)
.||+.-.|+-
T Consensus 519 ~viI~~lPfp 528 (620)
T 4a15_A 519 MIILAGLPFP 528 (620)
T ss_dssp EEEESSCCCC
T ss_pred EEEEEcCCCC
Confidence 9999887763
No 226
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=94.30 E-value=0.0036 Score=51.87 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=29.7
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccC
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYE 226 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~ 226 (864)
+++|+|++....+|...|||||+|..--+..|..+
T Consensus 26 le~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~e 60 (87)
T 3p7j_A 26 LEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSV 60 (87)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHH
T ss_pred CCceEEeeEEccCCcEEEEEEECCCCccceEeHHH
Confidence 68999999998899999999999987766666543
No 227
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=94.25 E-value=0.0042 Score=50.67 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.2
Q ss_pred chhhhHhhhhcCCccceeeeeecccccccccc
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYW 223 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tW 223 (864)
+++|+|++....+|...|||||+|..--+..+
T Consensus 10 le~EkI~g~~~~~Gel~fLvKWKg~~~~dlVp 41 (78)
T 3q6s_A 10 LEPERIIGATDSSGELMFLMKWKNSDEADLVP 41 (78)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCEEEEE
T ss_pred CCceEEeeEEcCCCcEEEEEEECCCChhheEe
Confidence 68999999999999999999999987555444
No 228
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.95 E-value=0.12 Score=50.59 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=27.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
.=.++.-.||+|||..++..+..+...+ .+++|+.|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 3356788999999998888877765333 488888886
No 229
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.93 E-value=0.35 Score=51.35 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=31.0
Q ss_pred ceeEEEeccccccc-C-cccHHHHHHHhcccccEEEeecCCCCCCHhHHHhhh
Q 002937 428 KWQCMIVDEGHRLK-N-KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM 478 (864)
Q Consensus 428 ~w~~vIvDEaH~lk-n-~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~~ll 478 (864)
...++|+||+|.+. . ....+...+.......++++|+++...-...+.+-+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 46789999999985 2 223333444444566788888877543333444433
No 230
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=93.92 E-value=0.039 Score=52.23 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=30.0
Q ss_pred ccccccccCCc----eeecCCCCCcccccccCCCCCCCCCC----CcccCccCC
Q 002937 52 DSCQACGESEN----LMSCDTCTYAYHAKCLVPPLKAPPSG----SWRCPECVS 97 (864)
Q Consensus 52 ~~C~~C~~~~~----l~~C~~C~~~~H~~Cl~p~~~~~p~~----~W~C~~C~~ 97 (864)
.+|. |+.+|+ +|.|..|.+.||..|+..+....-.+ .+.|..|..
T Consensus 6 ~yCY-CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 6 GSVD-EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred eEEE-cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 3566 887776 99999999999999997655332222 357999964
No 231
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=93.71 E-value=0.019 Score=61.39 Aligned_cols=60 Identities=23% Similarity=0.568 Sum_probs=46.0
Q ss_pred cccccccccccccCCceeecC--CCCCcccccccCCCCCC------CCCCCcccCccCCCCccccccccc
Q 002937 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVSPLNDIDKILDC 108 (864)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~~~~------~p~~~W~C~~C~~~~~~~~kil~~ 108 (864)
+++.+.+|..|+.||++++|+ .|+++|=..|+.--+.. .....|.|--|... +...+|.+
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~--p~~~ll~~ 156 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS--SRSGLLQR 156 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC--CEETTEEB
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc--chHhhhhh
Confidence 466788999999999999999 99999999999655422 22578999999843 33444443
No 232
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.25 E-value=0.33 Score=48.47 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=27.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
.=-++.-.||.|||..++..+...... ..+++|+-|.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeec
Confidence 334678899999998888877665433 3488888884
No 233
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.18 E-value=0.055 Score=57.23 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=28.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEeccc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLS 343 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~---~~~~LIV~P~s 343 (864)
+.+.+|.-++|+|||..|-++...+.... ..+++.+.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 34688999999999999988887775543 22555555443
No 234
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.06 E-value=0.51 Score=50.07 Aligned_cols=41 Identities=12% Similarity=-0.083 Sum_probs=29.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
.+.+.+|.-+.|+|||..+-+++..+... ..+++.+-....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHH
Confidence 34678999999999999988887777554 235555544333
No 235
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.97 E-value=1.1 Score=43.97 Aligned_cols=27 Identities=41% Similarity=0.706 Sum_probs=21.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.+.+|.-+.|+|||..+-.+...+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 358899999999999888887776443
No 236
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.13 E-value=1 Score=42.71 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 557889999999999999888877754
No 237
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.03 E-value=0.58 Score=49.29 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHH
Q 002937 290 QLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~ 327 (864)
|.+.+..|.....+++ ..|+.-+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555555555444 5788999999999988887764
No 238
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.80 E-value=0.31 Score=48.85 Aligned_cols=29 Identities=17% Similarity=-0.063 Sum_probs=23.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
.+.+.+|.-+.|+|||..+-+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46778899999999999988877766544
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.36 E-value=1 Score=44.80 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
++.+++.+.............+|.-+.|+|||..+-.++..+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44555555333222122235789999999999988777776644
No 240
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.33 E-value=1.3 Score=42.13 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467889999999999998888877654
No 241
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.29 E-value=1.1 Score=47.24 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=20.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 306 HVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
+.+|..+.|+|||..+-++...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 588999999999999888887764
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.02 E-value=0.56 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHh
Q 002937 305 THVILADEMGLGKTIQSIAFLASLF 329 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~ 329 (864)
.+.+|..+.|+|||..+-++...+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999888777764
No 243
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.95 E-value=0.94 Score=44.68 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=25.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
=-++.-+||.|||...+..+..+...+ .+++|+.|.-
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~~ 66 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPAI 66 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 346778899999987777765554333 4788888843
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.88 E-value=0.1 Score=47.94 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=27.6
Q ss_pred eeecCCCCCcccccccCCCC------CCCC-CCCcccCccCCC
Q 002937 63 LMSCDTCTYAYHAKCLVPPL------KAPP-SGSWRCPECVSP 98 (864)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~~------~~~p-~~~W~C~~C~~~ 98 (864)
|+.||.|..+||..|..-.- ...| ...|.||.|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 78999999999999984321 2334 457999999864
No 245
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.73 E-value=0.6 Score=50.67 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.1
Q ss_pred chHHHHHHH-HHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 287 HPYQLEGLN-FLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 287 ~~yQ~~~v~-~l~~~~~~--~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
++.+++.+. ++...... ....+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456666553 33332222 345889999999999998888776643
No 246
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.68 E-value=0.78 Score=44.56 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=25.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
+.=.++.-.||+|||...+-.+......+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 33456788999999976665555544333 578888875
No 247
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.38 E-value=1.5 Score=48.66 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL 342 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~-~~LIV~P~ 342 (864)
..+.+|.-+.|+|||..+-++...+.....+ +++.+-..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4578999999999999888777766544322 45544433
No 248
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.33 E-value=0.34 Score=51.48 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=26.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
..+.+|.-++|+|||..|-++...+ ..+++.|....+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~l 87 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDL 87 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHHH
Confidence 4568999999999999988777664 235555544433
No 249
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.20 E-value=1.3 Score=46.47 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
+.+|.-+.|+|||..+-.++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4889999999999998888877643
No 250
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.33 E-value=0.41 Score=50.39 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=21.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
+.+|.-+.|+|||..+-++...+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999888887653
No 251
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.32 E-value=1.5 Score=46.86 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 291 LEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 291 ~~~v~~l~~~~~~~~--~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...+..|......+. +.+|.-+.|+|||..+-+++..+..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444444444443 3789999999999999888887653
No 252
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.31 E-value=0.47 Score=51.22 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
..+.+|.-++|+|||..|-+++..+ ..+++.|-..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSS 118 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeHH
Confidence 4578999999999999998887776 2355555433
No 253
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.26 E-value=3.1 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
..+|.-+.|+|||..+-++...+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999999888877743
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.25 E-value=1.8 Score=44.15 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
..+......+.+.+|.-++|+|||..|-++...+.. ...|++.|-...
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~ 67 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCC
Confidence 344443456778999999999999877665554322 223555554333
No 255
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.80 E-value=0.58 Score=49.74 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
.++.+|.-++|+|||..|-+++..+ ...+++.|....++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLV 83 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECCSSC
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhHHHH
Confidence 4678899999999999988877765 12355555554443
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.59 E-value=0.68 Score=47.98 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=27.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
....+.+|.-+.|+|||..+-++...+ ..+++.+....+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~----~~~~~~v~~~~~ 87 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET----NATFIRVVGSEL 87 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT----TCEEEEEEGGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehHHH
Confidence 456788999999999999887776653 235555544333
No 257
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.52 E-value=1.5 Score=47.37 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHhh---cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 287 HPYQLEGLNFLRFSW---SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~---~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
++.+.+.+.-..... ..+.+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555553222222 34567889999999999998877776643
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.47 E-value=2.3 Score=43.13 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
...+.+|.-++|+|||..|-++...+ ..+++.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~ 74 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAE 74 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHH
Confidence 34567899999999999887777655 23555554444
No 259
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.33 E-value=3.4 Score=44.04 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhh-cCC--CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 002937 290 QLEGLNFLRFSW-SKQ--THVILADEMGLGKTIQSIAFLASLFGER 332 (864)
Q Consensus 290 Q~~~v~~l~~~~-~~~--~~~ILade~GlGKTi~ai~~i~~l~~~~ 332 (864)
|...+..+.... ..+ .+.+|.-+.|+|||..+-+++..+....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 445555565544 332 3478899999999998887777665543
No 260
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.25 E-value=0.85 Score=50.82 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
..++.+|.-++|+|||..|-++...+ ...+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHHHHHhhh
Confidence 34678899999999999988777765 12356666555554433
No 261
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.23 E-value=1.1 Score=46.87 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=26.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
..+.+|.-++|+|||..|-+++..+ ..+++.+....+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~~l 72 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAGEL 72 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHHHh
Confidence 3567788999999999998888776 235666654443
No 262
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.23 E-value=5.1 Score=43.07 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=32.4
Q ss_pred chHHHHHH-HHHHHhh--cCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 287 HPYQLEGL-NFLRFSW--SKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 287 ~~yQ~~~v-~~l~~~~--~~~~--~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
++.+++.+ .++.... ..+. ..+|.-+.|+|||..+-+++..+......+++.+-
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 45565555 3343221 2224 68899999999999988777766443222444443
No 263
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.94 E-value=0.43 Score=38.46 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=33.8
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
.-+.|.+|...-. -..|..|...||..|+..-+..... =.||.|..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~ 60 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCND 60 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcC
Confidence 3467999986432 4678999999999999876654322 36999985
No 264
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=83.63 E-value=0.63 Score=36.41 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.8
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
...|||||+|.+..+ |||..++.
T Consensus 27 el~fLvKWKg~~~~d--~Vpa~e~n 49 (65)
T 3kup_A 27 ELMFLMKWKDSDEAD--LVLAKEAN 49 (65)
T ss_dssp SCEEEEEETTCSCCE--EEEHHHHH
T ss_pred cEEEEEEECCCChhh--eEEHHHHH
Confidence 478999999988655 77766654
No 265
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=83.26 E-value=0.11 Score=40.14 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=31.7
Q ss_pred cccccccccccCCc---eeec--CCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 49 AKDDSCQACGESEN---LMSC--DTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C--~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+....|.+|..+++ +..| .+.-+.+|..||..-+.. .+.+.||.|...
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 34567999975432 3344 333349999999776543 346899999864
No 266
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.87 E-value=4.1 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
....+|.-+.|+|||..|-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999988887765
No 267
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.22 E-value=1.4 Score=48.01 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
..+.+|.-+.|+|||..|-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhccc
Confidence 5688999999999999887775543 2366666666655444
No 268
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.22 E-value=0.34 Score=39.76 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=31.7
Q ss_pred ccccccccccCC----ceee---cCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESE----NLMS---CDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~----~l~~---C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
..+.|.+|.... .++. |.++...||..|+..-+.. .+...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCee
Confidence 346799998532 2432 2333589999999876643 2346899999744
No 269
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.32 E-value=2.2 Score=40.59 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHhh-----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 287 HPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~-----~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
.+.|.+++..+.... ..+.+.+|.-+.|+|||..+-+++..+......+++.+....++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 357888887765332 346778899999999999988877776522222444444344444333
No 270
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=80.86 E-value=1.7 Score=51.17 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEeccccH-HHHHHHHHHHc
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTL-RNWEREFATWA 356 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~---~~~~~LIV~P~sll-~qW~~E~~~~~ 356 (864)
.|.|-|.++|.. .++..++....|+|||.+.+.-+.++... .+..+|+|+.+.-. ....+.+....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999862 35667788899999999988888877654 23479999986444 44555566654
No 271
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=80.85 E-value=1.3 Score=35.63 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=24.6
Q ss_pred heeeeeeecCCccccccccChHHHHHHhhcChhHHHHHHhHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFH 171 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~~~~~~~~~~~~~~~~~~ 171 (864)
...|||||+|... .+|||..++... +|. ++..|.
T Consensus 30 el~fLvkWkg~d~--~dlVpa~~a~~k---~Pq---~VI~FY 63 (74)
T 2fmm_A 30 ELMFLMKWKNSDE--ADLVPAKEANVK---CPQ---VVISFY 63 (74)
T ss_dssp EEEEEEEETTCSC--CEEEEHHHHHHH---CHH---HHHHHH
T ss_pred cEEEEEEECCCCc--ccEEEHHHHhhh---ChH---HHHHHH
Confidence 4789999999765 679999887542 564 445554
No 272
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.68 E-value=1.4 Score=46.17 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
..+.+.+|.-++|+|||..|-++...+ ..+++.|-...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~~~~l 85 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPEL 85 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEECHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEEhHHH
Confidence 456788999999999999887776654 235555543333
No 273
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.62 E-value=1.2 Score=48.03 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
...+.+|.-++|+|||..|-+++..+ ..+++.|....+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l 153 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASSL 153 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHHh
Confidence 45678999999999999887776654 235655555443
No 274
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=80.35 E-value=0.98 Score=33.60 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=31.4
Q ss_pred cccccccccC---Cc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGES---EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~---~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
...|.+|... ++ ......|+-.||..|+..-+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 3568888754 22 4555579999999999876644 3479999853
No 275
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.22 E-value=2 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=19.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 002937 305 THVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.+.||.-++|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999887666654
No 276
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.93 E-value=6.4 Score=38.37 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=34.7
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc--cHHHHHH
Q 002937 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS--TLRNWER 350 (864)
Q Consensus 293 ~v~~l~~-~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s--ll~qW~~ 350 (864)
++..+.. .+..+.-.+|+-+.|+|||..+..++. . ..++++++.-.. ....|.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHH
Confidence 4444443 445666788999999999988877766 1 224677776544 3344544
No 277
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.82 E-value=2.2 Score=45.96 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=28.7
Q ss_pred chHHHHHHHH-HHHh--hcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 287 HPYQLEGLNF-LRFS--WSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 287 ~~yQ~~~v~~-l~~~--~~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
++.+++.+.- +... -..+...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556665532 2221 123557889999999999988777776644
No 278
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.28 E-value=3 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=26.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
.+.+|.-++|+|||..+-++...+...+ .+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 6788999999999999888887776543 355544
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=76.70 E-value=5.2 Score=44.05 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=26.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
-.+++-..|+|||.++..++..+...+....||-++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3567788999999999888888876654344444443
No 280
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=76.44 E-value=13 Score=42.41 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH-HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeec--ccc
Q 002937 611 QLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST--RAG 687 (864)
Q Consensus 611 ~~l~~ll~~l~-~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst--~a~ 687 (864)
..+.+.+..+. ..+.++|||..+...++.+.+. .+.++ .+.|... .+.++++.|...+.. +|+++ ...
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v-~~q~~~~--~~~~~~~~~~~~~~~---vl~~v~gg~~ 449 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPK-YVESEDS--SVEDLYSAISANNKV---LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSE-EECCSSC--CHHHHHHHTTSSSSC---EEEEESSCCS
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcE-EEcCCCC--CHHHHHHHHHhcCCe---EEEEEeccee
Confidence 33444444443 3456888888888887777652 34333 3333221 246678888643332 56665 689
Q ss_pred ccCcCCC-----CCCEEEEeCCCCCcchhhHHHHHHHHh
Q 002937 688 GLGINLA-----TADTVIIYDSDWNPHADLQAMARAHRL 721 (864)
Q Consensus 688 ~~GinL~-----~a~~VI~~d~~wnp~~~~Qa~gR~~Ri 721 (864)
.+|||++ .+..||+.-.|+-+. +-....|...+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~ 487 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRV 487 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHT
T ss_pred cccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 9999999 478999999888555 44445555443
No 281
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.19 E-value=3.7 Score=48.76 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C--CCceEEEeccccH-HHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPLSTL-RNWEREFATW 355 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-~--~~~~LIV~P~sll-~qW~~E~~~~ 355 (864)
.|.|.|.++|. ...+..++....|+|||.+.+.-+.++... + +..+|+|+.+.-. ....+-+...
T Consensus 11 ~Ln~~Q~~av~------~~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHh------CCCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 58899999986 235666777799999999998888888764 3 3478999986543 3333344443
No 282
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.04 E-value=0.53 Score=37.89 Aligned_cols=47 Identities=32% Similarity=0.608 Sum_probs=32.7
Q ss_pred cccccccccc---CCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCc
Q 002937 50 KDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 50 ~~~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 100 (864)
....|.+|.. .++.+..-.|+-.||..|+..-+.. ...||.|.....
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCC
Confidence 3467999984 3444455569999999999765533 247999986543
No 283
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=74.27 E-value=5.1 Score=44.21 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=25.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
-.+++-..|.|||.++..++.++...+. ++++|+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 3567788999999999999888877654 444444
No 284
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=73.76 E-value=12 Score=44.54 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=70.0
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHH----HHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld----~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.|||-....-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|...++....+... ++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~---Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 588877655544444557889999998866544 44555555689999999999999999999988765444 45
Q ss_pred eeccc-cccCcCCCCCCEEEEeCCC
Q 002937 682 LSTRA-GGLGINLATADTVIIYDSD 705 (864)
Q Consensus 682 lst~a-~~~GinL~~a~~VI~~d~~ 705 (864)
++|.+ ....+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 55554 4556778888888876654
No 285
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=73.20 E-value=0.6 Score=36.80 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=30.7
Q ss_pred ccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
....|.+|... +..+..-.|+-.||..|+..-+.. ...||.|...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 34579999643 344445569999999999765433 2259999853
No 286
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.68 E-value=2.9 Score=46.97 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=25.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
....+.+|.-++|+|||..|-++...+ ..|++.|-.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~ 271 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 271 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEc
Confidence 455678999999999999887775543 235555543
No 287
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.40 E-value=9.7 Score=36.85 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=29.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
..+..++.-..|-|||..|+++.......+ .+++|+-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEE
Confidence 356788899999999999999888776654 3777774
No 288
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.45 E-value=2.2 Score=34.36 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=31.1
Q ss_pred ccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|... +..+.--.|.-.||..|+..-+.. ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 34679999754 233333358999999999766543 24799998643
No 289
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.40 E-value=14 Score=44.76 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999998888887754
No 290
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=70.37 E-value=1 Score=39.83 Aligned_cols=37 Identities=30% Similarity=0.629 Sum_probs=29.0
Q ss_pred ccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
...+|.+|++.+ |+.|...||+.|+.++ .|.|..|..
T Consensus 6 rC~~C~~C~~~~----C~~C~~c~~~~~~~~~-------~~~~~~c~~ 42 (117)
T 4bbq_A 6 RCRKCKACVQGE----CGVCHYCRDMKKFGGP-------GRMKQSCVL 42 (117)
T ss_dssp CCSCSHHHHSCC----CSCSHHHHHSGGGTSC-------CCSCCCCGG
T ss_pred cCCcCcCcCCcC----CCCCCCCcCCcccCCC-------Cccccchhh
Confidence 457899998764 9999999999998654 477777753
No 291
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.02 E-value=21 Score=42.38 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
...+.+|.-++|+|||..+-++...+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4667899999999999998888777654
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.80 E-value=12 Score=38.75 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
+.-.++.-..|.|||.++..++..+......+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3445566679999999988877776543223555554
No 293
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.51 E-value=8.1 Score=43.14 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
..+.+|.-++|+|||..+-++...+ ..|++.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~~ 83 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----NVPFFHISGS 83 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCHH
Confidence 4578899999999999887766654 2355555443
No 294
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.59 E-value=1.8 Score=43.63 Aligned_cols=46 Identities=26% Similarity=0.612 Sum_probs=33.9
Q ss_pred ccccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
.-..|.+|..-- .-..|..|+..||..|+.--+.. .+.=.||.|..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~ 225 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCND 225 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh--CCCCCCCCCCC
Confidence 357799999642 24889999999999999655443 23346999975
No 295
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=68.57 E-value=9.2 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 293 ~v~~l~~--~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
++..+.. .+..+.-.+|+-+.|+|||..++.++..+...+ +++++|.......+|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g-~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG-GTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-CeEEEEECCCChhHH
Confidence 4444443 445667788999999999999998888775543 488888877666665
No 296
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.51 E-value=3.5 Score=44.78 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=37.8
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
....+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..|-+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhccccchHH
Confidence 3456889999999999999988887765 237888888888777655543
No 297
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.05 E-value=1.6 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=23.1
Q ss_pred ecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 65 SCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 65 ~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.-..|+-.||..|+.+-+..-. .||.|+..
T Consensus 44 ~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 44 VWGECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp EEETTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred EeCCCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 3346999999999988765532 79999864
No 298
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=67.77 E-value=1 Score=35.52 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.7
Q ss_pred chhhhHhhhhc-CCccceeeeeeccc
Q 002937 192 TTVDRILACRG-EDDEKEYLVKYKEL 216 (864)
Q Consensus 192 ~~verIi~~~~-~~~~~~ylVKW~~l 216 (864)
..|++|++... .+|...||+||++-
T Consensus 11 ~~Ve~I~g~~~~~~g~L~flikwk~~ 36 (68)
T 1e0b_A 11 DLVSSIDTIERKDDGTLEIYLTWKNG 36 (68)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEETTS
T ss_pred hheeEEEEEEECCCCEEEEEEEECCC
Confidence 46889999887 88999999999974
No 299
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=67.58 E-value=7.2 Score=49.30 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecc
Q 002937 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPL 342 (864)
Q Consensus 283 ~~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-----~~~~LIV~P~ 342 (864)
+..|.+-|..+|. ..+++.++....|+|||.+.+.-+..+...+ ...+|+|+++
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 3578999999986 4577889999999999999888777776553 2478999885
No 300
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=67.58 E-value=5.5 Score=41.72 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEE
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVV 339 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~-~~~~~~~LIV 339 (864)
+.+.+|.-++|+|||..+.++...+. ..+ .+++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEE
Confidence 57889999999999999988888877 543 344444
No 301
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=67.51 E-value=0.84 Score=47.79 Aligned_cols=49 Identities=33% Similarity=0.636 Sum_probs=32.7
Q ss_pred ccccccccccC----Cc--eeecC--CCCCcccccccCCCCCCCCCC-------CcccCccCCC
Q 002937 50 KDDSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPSG-------SWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~----~~--l~~C~--~C~~~~H~~Cl~p~~~~~p~~-------~W~C~~C~~~ 98 (864)
....|.+|-.. |. ...|+ .|+..||..|+..-+...+++ .=.||.|..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 34568888732 33 45798 899999999997655433221 1249999863
No 302
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=67.32 E-value=1.4 Score=36.92 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=31.8
Q ss_pred cccccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 49 AKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.....|.+|... ++.+..-.|+-.||..|+..-+... -.||.|...
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCcc
Confidence 345679999743 3434434599999999998765432 379999864
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.99 E-value=4.2 Score=48.43 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
..++.+|.-++|+|||+.|-+++..+ ..+++.|-...++..|.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHTTTC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhcccc
Confidence 45678999999999998887666643 33666666566655553
No 304
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=66.32 E-value=7.1 Score=38.91 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=38.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
..|.-.+++-++|+|||.-++.++.........+++++.-.....+..+.+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 55667899999999999999888766444434588888876666655555544
No 305
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.19 E-value=3.5 Score=45.45 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=36.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
...+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCSSCSSHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEehhhhhhcccchH
Confidence 446788999999999999988887765 23788888887776665443
No 306
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=66.05 E-value=2.7 Score=33.77 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.1
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
...|||||||.+..+ |||..++.
T Consensus 37 el~fLVKWKg~~e~d--lVpa~ean 59 (75)
T 3i3c_A 37 DLMFLMKWKDTDEAD--LVLAKEAN 59 (75)
T ss_dssp CCEEEEEETTSSCEE--EEEHHHHH
T ss_pred cEEEEEEECCCChhc--eEEHHHHh
Confidence 478999999988755 88876654
No 307
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.46 E-value=3.6 Score=45.32 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
...+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..+-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGTCCSSSSHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhhhccccchHH
Confidence 446789999999999999998888765 23777777777776655443
No 308
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=65.07 E-value=12 Score=39.88 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.2
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 293 ~v~~l~~--~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
++..+.. .+..+.-.+|+-+.|+|||..++.++..+...+ ++++++.......++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g-~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG-GIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCCCcCHH
Confidence 4444443 445666688999999999999988887765543 477777766555443
No 309
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.67 E-value=1 Score=35.91 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=31.1
Q ss_pred cccccccccC---CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcc
Q 002937 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (864)
Q Consensus 51 ~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~ 101 (864)
...|.+|... +..+.--.|.-.||..|+..-+... -.||.|......
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 4579999864 2222222599999999997655332 279999865443
No 310
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.63 E-value=8.9 Score=28.51 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=28.4
Q ss_pred cccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
.+...|.+|...-.--.--.|+-.|+..|+.. ..-.||.|....
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEe
Confidence 34567999986533111234888899999854 244799998643
No 311
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=64.60 E-value=1.3 Score=32.83 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=31.9
Q ss_pred ccccccccccC----CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
....|.+|... +.....-.|+-.||..|+..-+... ..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 34679999854 2346666799999999997654332 579999854
No 312
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=64.08 E-value=9.7 Score=42.58 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=49.3
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcCCCCCCEEEE
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~GinL~~a~~VI~ 701 (864)
..|.+|||.+......+.|.+.|...|++....+... .+ ..+. +.+.......|.-++....+|+
T Consensus 380 ~~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~---~~g~--v~i~~g~L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EA---SDRG--RYLMIGAAEHGFVDTVRNLALI 444 (483)
T ss_dssp HCCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GC---CTTC--EEEEESCCCSCEEETTTTEEEE
T ss_pred hCCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hc---CCCc--EEEEEcccccCcccCCCCEEEE
Confidence 3578999999999888999999998888765543211 11 1222 3455567789999999999999
Q ss_pred eCC
Q 002937 702 YDS 704 (864)
Q Consensus 702 ~d~ 704 (864)
-+.
T Consensus 445 TE~ 447 (483)
T 3hjh_A 445 CES 447 (483)
T ss_dssp EHH
T ss_pred Ech
Confidence 775
No 313
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=64.04 E-value=1.6 Score=38.25 Aligned_cols=34 Identities=29% Similarity=0.660 Sum_probs=24.2
Q ss_pred cCCCCCcccccccCCCCCCCC-CCCcccCccCCCC
Q 002937 66 CDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPL 99 (864)
Q Consensus 66 C~~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~~ 99 (864)
...|.-.||..|+..-+.... ...-.||.|....
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 456999999999987663211 3455899998644
No 314
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=63.91 E-value=22 Score=33.93 Aligned_cols=30 Identities=27% Similarity=0.186 Sum_probs=22.5
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 310 ade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
.-.-|.|||..++.++..+...+ .++|+|=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g-~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG-YNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCC-CeEEEEE
Confidence 34678999999999988887754 3666664
No 315
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=63.86 E-value=14 Score=42.75 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccc
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~s 343 (864)
+.+..-|.+++..+.... . +..+|...-|-|||..+-.++..+. +..+|.+|..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCH
Confidence 467889999997774432 2 3356777899999955544455442 2468889953
No 316
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=63.78 E-value=13 Score=41.19 Aligned_cols=60 Identities=12% Similarity=-0.025 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
+++.+...+..|.-.+|+..+|.|||.-++.++.........|++++.......++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 455555556777778999999999999998888877654445888888765555555443
No 317
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=63.71 E-value=18 Score=37.83 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
+++.+...+..|.-.+|+..+|.|||.-++.++......+ .++|++.......+....+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCCHHHHHHHHH
Confidence 4444445567777899999999999999888887765543 58888887655555554443
No 318
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=62.78 E-value=2.4 Score=35.18 Aligned_cols=29 Identities=24% Similarity=0.696 Sum_probs=23.9
Q ss_pred cccccccccC--CceeecCC--CCCcccccccC
Q 002937 51 DDSCQACGES--ENLMSCDT--CTYAYHAKCLV 79 (864)
Q Consensus 51 ~~~C~~C~~~--~~l~~C~~--C~~~~H~~Cl~ 79 (864)
...|.+|++. |.-+.|.. |..+||..|..
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 3579999853 78899975 99999999964
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=62.57 E-value=12 Score=33.95 Aligned_cols=44 Identities=11% Similarity=-0.069 Sum_probs=27.9
Q ss_pred HHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 296 FLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 296 ~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
.+......+.+.+|.-++|+|||..|-++..... ....|++|-|
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v~~~ 59 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFVYRE 59 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCEEEE
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEEEEC
Confidence 3333345677899999999999988765544321 2234666333
No 320
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.49 E-value=4.7 Score=44.11 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=36.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
...+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..|-+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGGGCCSSSSHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHHhhhccCchHH
Confidence 446789999999999999998888765 237888888777766655433
No 321
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=61.74 E-value=4.3 Score=33.53 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=16.8
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
...|||||+|.+..+ +||..+..
T Consensus 40 el~fLVKWKg~~e~D--lVpa~ean 62 (87)
T 3p7j_A 40 RLTFLIQFKGVDQAE--MVPSSVAN 62 (87)
T ss_dssp EEEEEEEETTCSSCE--EEEHHHHH
T ss_pred cEEEEEEECCCCccc--eEeHHHHh
Confidence 478999999988766 55554443
No 322
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.31 E-value=4.7 Score=44.33 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=34.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E 351 (864)
...+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCCSSCSH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhccccch
Confidence 456788999999999999998888765 2377777777776655433
No 323
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=60.88 E-value=26 Score=37.95 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=66.9
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh---CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEe
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Ll 682 (864)
.+||-....-.+......+.++||.+.....+..+.+.+.. .|+++..+.|+.+..+|...++.+..++.. +++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEE
Confidence 68887754444444446788999999998887777776665 688999999999998888888888664433 3444
Q ss_pred ecccccc---CcCCCCCCEEEEeCC
Q 002937 683 STRAGGL---GINLATADTVIIYDS 704 (864)
Q Consensus 683 st~a~~~---GinL~~a~~VI~~d~ 704 (864)
+...... -+++...+.||+=+.
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CHHHHHHHHHHhccccccEEEEeCh
Confidence 4433311 255667777776544
No 324
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.62 E-value=4.7 Score=44.58 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
...+|.+|.-++|+|||..|-+++..+ ..+++.|....++..|..+-
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCCCSSSHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEhHHhhcccCCHH
Confidence 467789999999999999998887765 23778888777776664443
No 325
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=60.48 E-value=4.6 Score=28.99 Aligned_cols=34 Identities=26% Similarity=0.740 Sum_probs=19.9
Q ss_pred eecCCCCCcccccccCC-CCCCCCCCCcccCccCCC
Q 002937 64 MSCDTCTYAYHAKCLVP-PLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p-~~~~~p~~~W~C~~C~~~ 98 (864)
-.|..|+..|...=-+| +..++ ..+|.||.|...
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~l-P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQL-PDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGS-CTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhC-CCCCcCcCCCCc
Confidence 45777776665332222 22233 346999999864
No 326
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=60.01 E-value=2.1 Score=37.76 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=0.0
Q ss_pred CCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 68 TCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 68 ~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
.|.-.||..|+.+-+.. .-.||.|...
T Consensus 83 ~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 69999999999887655 2369999864
No 327
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=58.68 E-value=5.1 Score=32.44 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=18.0
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
...|||||+|.+..+ |||...+.
T Consensus 24 el~fLvKWKg~~~~d--lVpa~ean 46 (78)
T 3q6s_A 24 ELMFLMKWKNSDEAD--LVPAKEAN 46 (78)
T ss_dssp SCEEEEEETTCSCEE--EEEHHHHH
T ss_pred cEEEEEEECCCChhh--eEeHHHHH
Confidence 478999999988655 88876654
No 328
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.53 E-value=6.8 Score=43.59 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
.+++.+|..++|+|||..|-++...+-.. .+++.+....+...|
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVYSTE 105 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGCCSS
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHHHHh
Confidence 34688999999999999998888876322 366666665555443
No 329
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.29 E-value=8.5 Score=31.57 Aligned_cols=34 Identities=38% Similarity=0.929 Sum_probs=27.1
Q ss_pred eeecCCCCC-cccccccCCCCCCCCCCCcccCccCCCC
Q 002937 63 LMSCDTCTY-AYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 63 l~~C~~C~~-~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
|+.|..|.. .-|..|.. +. .....|.|..|....
T Consensus 46 L~lC~~Cgs~gtH~~Cs~--l~-~~~~~weC~~C~~v~ 80 (85)
T 1weq_A 46 LILCATCGSHGTHRDCSS--LR-PNSKKWECNECLPAS 80 (85)
T ss_dssp CEECSSSCCCEECSGGGT--CC-TTCSCCCCTTTSCCS
T ss_pred EEeCcccCCchhHHHHhC--Cc-CCCCCEECCcCcccc
Confidence 999999975 79999994 43 246789999998543
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=58.29 E-value=25 Score=36.87 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=32.7
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecccc
Q 002937 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLST 344 (864)
Q Consensus 300 ~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-----~~~~LIV~P~sl 344 (864)
.+..+.-.+|+-+.|+|||..++.++....... .++++++.-...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 345666788999999999999988887653321 347788877654
No 331
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=57.90 E-value=2.4 Score=36.70 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=22.6
Q ss_pred cCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 66 CDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 66 C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
--.|+-.||..|+.+-+.. .-.||.|...
T Consensus 70 ~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 70 WGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp EETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred ecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 3479999999999887654 3469999864
No 332
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=56.73 E-value=17 Score=40.16 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E 351 (864)
+++.+...+..|.-.+|+..+|.|||.-++.++..+......+++++.......+...-
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH
Confidence 45555556677888899999999999999888887764333488888875544444433
No 333
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.49 E-value=6.6 Score=30.88 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=33.1
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|...-. .+.. .|+-.||..|+..-+.. ..+.-.||.|....
T Consensus 19 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 3467999986533 2222 79999999999766542 23456899998643
No 334
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=56.12 E-value=3.5 Score=32.84 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=35.2
Q ss_pred ccccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcccccc
Q 002937 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (864)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~ki 105 (864)
....|.+|...- +-+.-..|+-.||..|+...+... +.-.||.|.......+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCTTTT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCcccc
Confidence 346799998652 333444599999999997665431 345799999754433333
No 335
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=55.69 E-value=2.6 Score=32.86 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=31.9
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCc
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 100 (864)
...|.+|...-. -...-.|+-.||..|+..-+.. ...||.|.....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhH
Confidence 457999987643 2345579999999999664422 247999986543
No 336
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.61 E-value=1.9 Score=33.92 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=31.8
Q ss_pred cccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCc
Q 002937 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 100 (864)
...|.+|...-.. .--.|+-.||..|+..-+. ....||.|.....
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----CcCcCCCcCCccc
Confidence 4679999865332 3346888999999977554 3567999985443
No 337
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=54.16 E-value=16 Score=40.26 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
+++.+...+..|.-.+|+..+|.|||.-++.++...... ..++|++.-.-...+...-+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHH
Confidence 455555566777789999999999999999888877655 34888887765555544443
No 338
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=52.94 E-value=7.7 Score=40.84 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.3
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 297 l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
+......+.+.+|..++|+|||..+-++...+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 33334457899999999999999887776654
No 339
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=52.64 E-value=8.9 Score=34.78 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=28.1
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~ 352 (864)
...+.+.+|.-++|+|||..|-++... .. |++.+-...+...|...+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~----~~-~~~~~~~~~~~~~~~~~~ 70 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKN----GT-PWVSPARVEYLIDMPMEL 70 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCT----TS-CEECCSSTTHHHHCHHHH
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHh----CC-CeEEechhhCChHhhhhH
Confidence 356778999999999999765433222 12 554444344444443433
No 340
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=52.54 E-value=17 Score=26.80 Aligned_cols=36 Identities=28% Similarity=0.718 Sum_probs=20.0
Q ss_pred eecCCCCCcccccccCC-----CC---CCCCCCCcccCccCCCCc
Q 002937 64 MSCDTCTYAYHAKCLVP-----PL---KAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p-----~~---~~~p~~~W~C~~C~~~~~ 100 (864)
-.|..|+-.|...==+| |- .++ ..+|.||.|...+.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDL-PDDWACPVCGASKD 47 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSS-CTTCCCSSSCCCTT
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHC-CCCCcCCCCCCcHH
Confidence 45777776664321111 11 222 35899999987543
No 341
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=52.53 E-value=26 Score=37.01 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHH
Q 002937 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 293 ~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E 351 (864)
.++.+...+..+.-.+|+..+|.|||.-++.++..+.. ...+++++...-...+...-
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHH
Confidence 44445455677777899999999999999888877655 33588888876555444433
No 342
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.31 E-value=3.2 Score=32.14 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=31.0
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...-. -+. ..|+-.||..|+..-+. .+.-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS---SSSPKCTACQESI 60 (66)
T ss_dssp CEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT---TSSCCCTTTCCCC
T ss_pred CCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH---hCcCCCCCCCcCC
Confidence 467999985422 111 37999999999976654 3455799998643
No 343
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.18 E-value=4.7 Score=31.72 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=31.0
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|...-. .+.. .|+-.||..|+...+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred CCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 3457999986533 2222 59999999999765543 25799998643
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.81 E-value=16 Score=36.20 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe-ccccHHHHH
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA-PLSTLRNWE 349 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~-P~sll~qW~ 349 (864)
+.++....|.|||..++.+...+...+.+..++.+ |..-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 57889999999999999999998877654434444 333444443
No 345
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.74 E-value=14 Score=36.03 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 002937 305 THVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l 328 (864)
++.++.-.+|+|||..|.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999988876
No 346
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=51.48 E-value=15 Score=39.09 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHhhcC----CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 287 HPYQLEGLNFLRFSWSK----QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 287 ~~yQ~~~v~~l~~~~~~----~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
++.+..++..+...... +.+.+|.-++|+|||..|-++...+... .|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD--TPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS--CCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc--CCcccccc
Confidence 45666666555444433 3468899999999999998888877422 35555544
No 347
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=49.71 E-value=2.3 Score=36.35 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=34.8
Q ss_pred ccccccccccC-CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGES-ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~-~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|... .+-+.|..|+-.||..|+..-+... ...||.|....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcC
Confidence 34679999865 3467788999999999997654332 15799998644
No 348
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.60 E-value=9.8 Score=28.31 Aligned_cols=35 Identities=29% Similarity=0.682 Sum_probs=20.5
Q ss_pred eecCCCCCcccccccCCC--------CCCCCCCCcccCccCCCC
Q 002937 64 MSCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p~--------~~~~p~~~W~C~~C~~~~ 99 (864)
..|..|+..|...=-+|. ..++ ..+|.||.|-..+
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~l-P~dw~CP~Cg~~K 46 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDI-PDDWVCPLCGVGK 46 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGS-CTTCBCTTTCCBG
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHC-CCCCcCcCCCCcH
Confidence 457778777754322221 1122 3579999998754
No 349
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=49.34 E-value=21 Score=40.05 Aligned_cols=58 Identities=3% Similarity=-0.138 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHH
Q 002937 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (864)
Q Consensus 294 v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E 351 (864)
++.+...+..+.-.+|+..+|.|||.-++.++..+......++|++.-.....+....
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence 3344445567777899999999999999999888765434588888876555554443
No 350
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.96 E-value=57 Score=27.45 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=41.9
Q ss_pred eEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 626 kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
-.+|||.-...+.-|-..+...|..+..+.+......|.+.++.|...+
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 4678898888888888888889999999999999999999999997643
No 351
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=48.86 E-value=4 Score=38.38 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=34.2
Q ss_pred ccccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|...- +-+.+..|+-.||..|+..-+.. +...||.|....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcC
Confidence 346799998653 35556689999999999765542 356799998654
No 352
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.82 E-value=21 Score=36.70 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
...+.+|.-++|+|||..|-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999888777766
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=48.11 E-value=30 Score=34.07 Aligned_cols=52 Identities=27% Similarity=0.224 Sum_probs=36.9
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHH
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~ 353 (864)
+..|.-.+|+-+.|+|||..++.++..+... .++++++.......+..+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH
Confidence 4566677899999999999988887776554 347788877655555444443
No 354
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=47.94 E-value=3.5 Score=35.09 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
...|||-+.|++.....|||++.|.
T Consensus 58 ~~~Y~VHY~GWn~rwDEWV~edRil 82 (101)
T 3m9q_A 58 FYEYKIHFQGWRPSYDRAVRATVLL 82 (101)
T ss_dssp EEEEEEEETTSCGGGCEEECGGGEE
T ss_pred ceEEEEEeCCCCcCceeecCHHHcc
Confidence 4789999999999999999998765
No 355
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=47.28 E-value=17 Score=28.87 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=32.7
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCC---CCCCcccCccCCCCc
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP---PSGSWRCPECVSPLN 100 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~---p~~~W~C~~C~~~~~ 100 (864)
...|.+|...-. -+. -.|+-.||..|+..-+... ..+.-.||.|.....
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 467999985422 111 2699999999997766542 134668999987543
No 356
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.86 E-value=79 Score=25.02 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCceEEEEeccHH--HHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 611 QLLDKMMVKLKEQGHRVLIYSQFQH--MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 611 ~~l~~ll~~l~~~g~kvlIFsq~~~--~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
+-+.++++.++.+|+..+||.+-.. -...........|.+|-.+.. +.+++-.+.+..|-.
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlks-tdpeeltqrvreflk 100 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS-TDPEELTQRVREFLK 100 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC-CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc-CCHHHHHHHHHHHHH
Confidence 4467888999999999999987543 344566666778999998865 566777777777743
No 357
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=46.48 E-value=7.8 Score=38.72 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=33.5
Q ss_pred chhhhHhhhhcCCccceeeeeeccccccccccccCCCCCccHHHHHHHHH
Q 002937 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (864)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~l~y~~~tWe~~~~~~~~~~~i~~~~~ 241 (864)
..+..++..+..++..+||+||. .+.+++|.....+. +..++.|..
T Consensus 187 ~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~w~~~~~i~--~~li~~y~~ 232 (244)
T 3ui2_A 187 AEVDEIVEKRGKGKDVEYLVRWK--DGGDCEWVKGVHVA--EDVAKDYED 232 (244)
T ss_dssp EEEEEEEEEESCTTSCEEEEEES--SSSCEEEEESTTBC--HHHHHHHHH
T ss_pred ccHHHHHHHhccCcchhhhhhhc--CCCCCCcCcchhcC--HHHHHHHHH
Confidence 44455555566667889999995 57889999887654 567788876
No 358
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=46.43 E-value=4 Score=31.92 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=32.6
Q ss_pred ccccccccccC-------CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|... +.......|+-.||..|+..-+... -.||.|....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCcc
Confidence 34679999853 3455667899999999997654322 2799998643
No 359
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.97 E-value=20 Score=37.59 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=31.1
Q ss_pred chHHHHHHH-HHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 287 HPYQLEGLN-FLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 287 ~~yQ~~~v~-~l~~~~--~~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
|+-|...+. +|.... ..+.+.+|.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555553 444333 34556789999999999999998888864
No 360
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=45.59 E-value=57 Score=40.46 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhh---CCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEe
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Ll 682 (864)
.|||-.+..-.+......|.++||.+.....+..+.+.+.. .|+++..++|+++..+|...++.+..+... +++.
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV~ 180 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 180 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEE
Confidence 68898866655555557788999999999888887777776 578999999999998888888888765444 2344
Q ss_pred ecccccc---CcCCCCCCEEEEeCC
Q 002937 683 STRAGGL---GINLATADTVIIYDS 704 (864)
Q Consensus 683 st~a~~~---GinL~~a~~VI~~d~ 704 (864)
++...-. -+++...+.||+=+.
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CHHHHHHHHHhhcccCcCEEEEeCC
Confidence 4333311 145667888877554
No 361
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=51.34 E-value=4.4 Score=33.41 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=23.0
Q ss_pred eeeeeeecCCccccccccChHHHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
.+|+|-|.|+.-..+.|||++.|..
T Consensus 42 ~~YyVHY~GwNkR~DEWV~~~Rl~k 66 (85)
T 2lrq_A 42 VEYYIHYAGWSKNWDEWVPENRVLK 66 (85)
Confidence 7899999999999999999988764
No 362
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.05 E-value=75 Score=26.98 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHHHHHcCceEEEEec------cHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHh
Q 002937 615 KMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 615 ~ll~~l~~~g~kvlIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 670 (864)
+.++.+.+ .++|+||+. +=........+|...|++|..++=......++.+.+..
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 44455544 568999988 46678888899999999999988666666565554443
No 363
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=44.89 E-value=57 Score=40.69 Aligned_cols=97 Identities=8% Similarity=0.031 Sum_probs=66.4
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHH----hhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEE
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (864)
.+||-......+-.....|.+++|.+..+..+....+.+ ...++++..+.|..+..++...++....+... +++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--IvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--ILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEE
Confidence 578876655444444567889999999876655444444 44578899999999999999998888765444 234
Q ss_pred eeccccccCcCCCCCCEEEEeCC
Q 002937 682 LSTRAGGLGINLATADTVIIYDS 704 (864)
Q Consensus 682 lst~a~~~GinL~~a~~VI~~d~ 704 (864)
.+.......+++...+.||+=+-
T Consensus 712 ~T~~ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEEESG
T ss_pred ECHHHHhCCccccccceEEEech
Confidence 44455566677777776666443
No 364
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.56 E-value=51 Score=34.08 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
..+........+++|.-++|+|||..|-++..... ....|++.|-...+
T Consensus 16 ~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 16 NEIAMVAPSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCAAL 64 (304)
T ss_dssp HHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECSSC
T ss_pred HHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCCCC
Confidence 33333335677899999999999988766555432 22347766644433
No 365
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=43.69 E-value=3.8 Score=31.23 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=31.5
Q ss_pred cccccccccC-------CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|... ++.+....|+-.||..|+..-+.. .-.||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 3568899853 234455689999999999765433 33799998643
No 366
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=43.64 E-value=90 Score=34.80 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
..+.+|.-+.|+|||..+-++...+ ..+++.+..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~----~~~~i~i~g 97 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASG 97 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 4568999999999998876665543 135555543
No 367
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=43.49 E-value=26 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
...+.+|.-++|+|||..|-++...+ ..|++.+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEechH
Confidence 45678999999999999887777665 2366655443
No 368
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.42 E-value=3.8 Score=33.26 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=30.7
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...-. .+. ..|+-.||..|+..-+.. .-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA----TPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH----CSBCSSSCCBC
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC----CCcCCCcCccc
Confidence 457999986533 222 479999999999765532 34799998644
No 369
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=42.81 E-value=8.6 Score=31.06 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=32.0
Q ss_pred ccccccccccCCc-----eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcc
Q 002937 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (864)
Q Consensus 50 ~~~~C~~C~~~~~-----l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~ 101 (864)
++..|.+|...-. ++.| .|+-.|+..|+..-.. .+...||.|+.....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---DENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---SSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---cCCCCCCCCCCccCC
Confidence 3457999987421 2223 5899999999864432 246789999975543
No 370
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=42.76 E-value=15 Score=29.76 Aligned_cols=15 Identities=33% Similarity=1.108 Sum_probs=11.1
Q ss_pred CCCcccCccCCCCcc
Q 002937 87 SGSWRCPECVSPLND 101 (864)
Q Consensus 87 ~~~W~C~~C~~~~~~ 101 (864)
..+|.||.|...+..
T Consensus 58 PddW~CPvCga~K~~ 72 (81)
T 2kn9_A 58 PDDWSCPDCGAAKSD 72 (81)
T ss_dssp CTTCCCTTTCCCGGG
T ss_pred CCCCcCCCCCCCHHH
Confidence 358999999875443
No 371
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.32 E-value=19 Score=28.39 Aligned_cols=42 Identities=36% Similarity=0.708 Sum_probs=22.7
Q ss_pred eeecCCCCCcccccccC-----CCC---CCCCCCCcccCccCCCCcccccc
Q 002937 63 LMSCDTCTYAYHAKCLV-----PPL---KAPPSGSWRCPECVSPLNDIDKI 105 (864)
Q Consensus 63 l~~C~~C~~~~H~~Cl~-----p~~---~~~p~~~W~C~~C~~~~~~~~ki 105 (864)
.-.|..|+..|...==+ ||- .++ ..+|.||.|...+..-.++
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~l-Pddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDL-SDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGS-CTTCBCTTTCCBGGGEEEC
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhC-CCCCcCCCCCCCHHHceEc
Confidence 34566677666432111 111 223 3579999999765444333
No 372
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.29 E-value=88 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHHHcCceEEEEec------cHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHH
Q 002937 615 KMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 615 ~ll~~l~~~g~kvlIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 669 (864)
..++.+.+ .++|+||+. +=........+|...|++|..++=......|+.+.+.
T Consensus 7 ~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 7 LRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 34444444 569999985 4456777888899999999999877666666555443
No 373
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=42.07 E-value=18 Score=35.85 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~ 333 (864)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 356778999999999999999987754
No 374
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.91 E-value=18 Score=27.02 Aligned_cols=36 Identities=22% Similarity=0.594 Sum_probs=20.2
Q ss_pred eecCCCCCcccccccC-----CCC---CCCCCCCcccCccCCCCc
Q 002937 64 MSCDTCTYAYHAKCLV-----PPL---KAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 64 ~~C~~C~~~~H~~Cl~-----p~~---~~~p~~~W~C~~C~~~~~ 100 (864)
-.|..|+..|...==+ ||- .++ ..+|.||.|...+.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDI-PADWVCPDCGVGKI 47 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGS-CTTCCCTTTCCCGG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHC-CCCCcCCCCCCCHH
Confidence 4577777666532211 111 122 35899999987543
No 375
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.87 E-value=8.4 Score=28.56 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=28.3
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCcc
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPEC 95 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C 95 (864)
...|.+|...-. -+. -.|+-.||..|+..-+... ...-.||.|
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 457999986522 111 3589899999997664432 345678887
No 376
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.56 E-value=17 Score=37.49 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=25.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 305 ~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
...+|.-++|+|||..|-++...+... .++++.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 357899999999999988777766443 23555553
No 377
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=41.02 E-value=19 Score=42.84 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
..+|.+|.-..|+|||..|=+++..+ ..+++.|-...++..|.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el----g~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT----TCEEEEEEHHHHHSSCT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh----CCeEEEEEhHHhhcccc
Confidence 35678999999999998876555432 23556555555554443
No 378
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=40.89 E-value=23 Score=35.49 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~ 333 (864)
.|.+-++|.|||+.+++++..+.+.+.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 356789999999999999999987653
No 379
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=40.85 E-value=17 Score=37.05 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.++.+|.-+.|+|||..+.+++..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3457889999999999998887753
No 380
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=40.66 E-value=10 Score=31.52 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=25.4
Q ss_pred ccccccccCCc--eeecCCCCCcccccccCCCC
Q 002937 52 DSCQACGESEN--LMSCDTCTYAYHAKCLVPPL 82 (864)
Q Consensus 52 ~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~~ 82 (864)
..|.+|+..+. .-.|..|+-..|..|...|.
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred eEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence 57999997654 77899999999999986554
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=40.63 E-value=37 Score=32.92 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 300 ~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
.+..|.-.+|.-+.|+|||..+..++..+... .++++++......
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~ 63 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESR 63 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCH
Confidence 34566677889999999998887777555433 2467776654433
No 382
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.55 E-value=36 Score=33.97 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578899999999998887766654
No 383
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=40.46 E-value=37 Score=29.88 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.4
Q ss_pred EEEEeccHHH-------HHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhc
Q 002937 627 VLIYSQFQHM-------LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (864)
Q Consensus 627 vlIFsq~~~~-------ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn 671 (864)
|.||+..... ...+..+|..+|++|..++=+...+.|++++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5667654332 36788899999999999999999999999999884
No 384
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=40.46 E-value=36 Score=29.89 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHcC-ceEEEEec-cHHHHHHHHHHHhhCCCcEEEEeccCCH
Q 002937 608 GKLQLLDKMMVKLKEQG-HRVLIYSQ-FQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (864)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g-~kvlIFsq-~~~~ld~L~~~L~~~g~~~~~i~G~~~~ 660 (864)
+++..+...+..+. .+ ++|+|||+ .-.........|...|+++..++|+...
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 73 YKLKDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GGHHHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred ccHHHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 34444444455543 45 89999994 5455567778888899999999998754
No 385
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=39.41 E-value=32 Score=43.17 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=37.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEeccccHHHHHHHHHHHcC
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFATWAP 357 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~--~~~~LIV~P~sll~qW~~E~~~~~p 357 (864)
.|+| ..|+|||.+.+.-+.++...+ +.++|++||.....+-+..+....+
T Consensus 5 lV~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 3444 689999999988888877543 3589999998887776666655443
No 386
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=39.30 E-value=36 Score=31.27 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHH
Q 002937 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (864)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L 644 (864)
..+..+..+|+.+....|.||+|.|.....++.|.+.|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999
No 387
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=38.96 E-value=16 Score=30.38 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.4
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
..+|+|-|.|+.-.-.+|++++.|.
T Consensus 47 ~~~YYVHY~g~NkRlDEWV~~~RL~ 71 (92)
T 2bud_A 47 PDEYYVHYVGLNRRLDGWVGRHRIS 71 (92)
T ss_dssp CCEEEEECSSSCTTTCEEEETTTEE
T ss_pred CcEEEEEeCCcccccccccCHHHhc
Confidence 3799999999999999999998764
No 388
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.92 E-value=2.5 Score=32.86 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=31.6
Q ss_pred ccccccccccC-------CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
....|.+|... +..+....|+-.||..|+..-+.. .-.||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 34679999853 234455689999999999765433 2369999864
No 389
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=38.87 E-value=5.3 Score=34.45 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=22.0
Q ss_pred eeeeeeecCCccccccccChHHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
.+|+|-|.|++..-+.|||++.|.
T Consensus 59 ~~Y~VHY~GWn~~wDEWV~e~rll 82 (110)
T 3m9p_A 59 PEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGEE
T ss_pred eEEEEEECCCCcchhhccCHhhhh
Confidence 689999999999999999998765
No 390
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=38.64 E-value=31 Score=45.23 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=38.7
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHHHHHHHHc
Q 002937 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (864)
Q Consensus 301 ~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~~E~~~~~ 356 (864)
+..+.+.+|.-++|+|||..|++++......+ .+++++.....+.+-. .+.|.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G-~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSCCCHHH--HHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEEcccccCHHH--HHHcC
Confidence 45788899999999999999999988766543 4777777765553322 44554
No 391
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=38.06 E-value=31 Score=33.46 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=29.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe--ccccHHHHHH
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA--PLSTLRNWER 350 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~--P~sll~qW~~ 350 (864)
+..-.-|.|||..++.++..+...+ ++|+|= |...+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHHHHhc
Confidence 4456779999999999998887765 666653 5555555543
No 392
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=37.93 E-value=23 Score=35.68 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~ 333 (864)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 356789999999999999999987764
No 393
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=37.93 E-value=6.5 Score=35.67 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=29.1
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+..|.+|...-. .+. -.|+-.||..|+..-+.. .-.||.|...
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 356999986532 222 258999999998765443 2369999853
No 394
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=37.83 E-value=16 Score=23.95 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=17.1
Q ss_pred ccccccCCCC-CCCCCCCcccCccCCCC
Q 002937 73 YHAKCLVPPL-KAPPSGSWRCPECVSPL 99 (864)
Q Consensus 73 ~H~~Cl~p~~-~~~p~~~W~C~~C~~~~ 99 (864)
|...|..|-. .+.-+|.|+|..|.+-.
T Consensus 4 yD~~C~KPC~T~DDCS~gw~CqaC~nfa 31 (38)
T 4cpa_I 4 ADPICNKPCKTHDDCSGAWFCQACWNSA 31 (38)
T ss_dssp SCTTTTCBCSSSSSSCCCSSCCEEETTT
T ss_pred cccccCCCccCccccccchHHHHHHhhc
Confidence 3444555533 33457899999998644
No 395
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=37.80 E-value=1.6e+02 Score=24.97 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=50.1
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC--CCceEEEeeccccccCcCCC--CCC
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN--SSRFCFLLSTRAGGLGINLA--TAD 697 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~--~~~~v~Llst~a~~~GinL~--~a~ 697 (864)
..|..+..++.....+..+. ........+|-.++...-...+...+... ....+++++......-.... +++
T Consensus 25 ~~~~~v~~~~~~~~a~~~l~----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQAL----AHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHHH----HSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 35677777766666555443 34677788876655444444455444321 12223455544322112222 233
Q ss_pred EEEEeCCCCCcchhhHHHHHHHHhC
Q 002937 698 TVIIYDSDWNPHADLQAMARAHRLG 722 (864)
Q Consensus 698 ~VI~~d~~wnp~~~~Qa~gR~~RiG 722 (864)
. ++.-|+++....+++.++.+-+
T Consensus 101 ~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 101 A--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp E--EEESSCCHHHHHHHHHHHHHHH
T ss_pred e--EEeccCCHHHHHHHHHHHHhhh
Confidence 3 3335788888888888886644
No 396
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=37.52 E-value=8.6 Score=41.34 Aligned_cols=49 Identities=18% Similarity=0.461 Sum_probs=33.9
Q ss_pred ccccccccccCCceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCcc
Q 002937 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (864)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~ 101 (864)
....|.+|...-.-.....|+-.||..|+..-+.. ..-.||.|......
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 34689999876554455679999999999654331 23379999975544
No 397
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.93 E-value=22 Score=29.21 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=20.2
Q ss_pred eeecCCCCCccccc-----ccCCCC---CCCCCCCcccCccCCCCc
Q 002937 63 LMSCDTCTYAYHAK-----CLVPPL---KAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 63 l~~C~~C~~~~H~~-----Cl~p~~---~~~p~~~W~C~~C~~~~~ 100 (864)
...|..|+..|... +-.||- .++ ..+|.||.|.....
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedl-PddW~CPvCga~K~ 79 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDI-PDDWCCPDCGATKE 79 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGC-CTTCCCSSSCCCGG
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHC-CCCCCCCCCCCCHH
Confidence 45566666665432 111121 223 35799999987543
No 398
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.55 E-value=7.5 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=32.0
Q ss_pred cccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...- +-+....|+-.||..|+...+.. .-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCccc
Confidence 46799998653 34445679999999999665532 34699998644
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=36.48 E-value=94 Score=32.14 Aligned_cols=52 Identities=17% Similarity=0.050 Sum_probs=34.0
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHh-c-----------CC---CCceEEEecccc
Q 002937 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLF-G-----------ER---ISPHLVVAPLST 344 (864)
Q Consensus 293 ~v~~l~~-~~~~~~~~ILade~GlGKTi~ai~~i~~l~-~-----------~~---~~~~LIV~P~sl 344 (864)
++..+.. .+..+.-.+|+-+.|+|||..++.++.... . .+ .++++++.-...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 3444432 335566678999999999999988887632 1 11 147788876554
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=36.46 E-value=71 Score=32.59 Aligned_cols=46 Identities=7% Similarity=-0.117 Sum_probs=32.5
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecc
Q 002937 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (864)
Q Consensus 297 l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~ 342 (864)
+...+..|.-.+|+-..|.|||..+..++..+......+++++...
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3345567777889999999999888777766654432377777654
No 401
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=36.18 E-value=1.3e+02 Score=26.03 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=37.7
Q ss_pred HHHHHHHHcCceEEEEecc------HHHHHHHHHHHhhCCCc---EEEEeccCCHHHHHHHHHHh
Q 002937 615 KMMVKLKEQGHRVLIYSQF------QHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRF 670 (864)
Q Consensus 615 ~ll~~l~~~g~kvlIFsq~------~~~ld~L~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~F 670 (864)
+.++.+.+ .++|+||+.. =.......++|...|++ |..++=......|+.+.+..
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s 70 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS 70 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh
Confidence 34445444 5689999884 55677788888888998 88887666665555554433
No 402
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=36.04 E-value=30 Score=33.61 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
|..-..|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G-~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG-YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT-CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEcc
Confidence 4566789999999999999887664 36777655
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=35.73 E-value=35 Score=34.27 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
...+.+|.-++|+|||..|-++...+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35678899999999999988777665
No 404
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=35.62 E-value=18 Score=40.58 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 295 ~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+......+.+.+|..++|+|||..|-++...+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3344444667899999999999998876665544
No 405
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.58 E-value=7.4 Score=31.47 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=31.9
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCC--CCCCcccCccCCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP--PSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~--p~~~W~C~~C~~~~ 99 (864)
...|.+|...-. -+. -.|+-.||..|+..-+... ..+...||.|....
T Consensus 19 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 457999986532 222 2599999999996544321 23467899998643
No 406
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=35.57 E-value=20 Score=35.51 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=22.8
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 310 ade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
.---|.|||..|+.+...+...+ .++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g-~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY-DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC-SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 55779999999999998887664 466665
No 407
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=35.57 E-value=14 Score=24.38 Aligned_cols=13 Identities=23% Similarity=0.986 Sum_probs=10.5
Q ss_pred CCCCcccCccCCC
Q 002937 86 PSGSWRCPECVSP 98 (864)
Q Consensus 86 p~~~W~C~~C~~~ 98 (864)
..|+|.|+.|...
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4689999999754
No 408
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=35.19 E-value=7.1 Score=33.31 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=22.5
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
..+|+|-|.|+.-..++|||++.|.
T Consensus 51 ~~~Y~VHY~GwNkR~DEWV~~~Rl~ 75 (102)
T 2f5k_A 51 QVKYFIHYSGWNKNWDEWVPESRVL 75 (102)
T ss_dssp EEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred CcEEEEEeCCcCCCceeeccHhhcc
Confidence 4799999999999999999998764
No 409
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.12 E-value=21 Score=26.27 Aligned_cols=35 Identities=31% Similarity=0.796 Sum_probs=19.7
Q ss_pred eecCCCCCcccccc-----cCCCCC---CCCCCCcccCccCCCC
Q 002937 64 MSCDTCTYAYHAKC-----LVPPLK---APPSGSWRCPECVSPL 99 (864)
Q Consensus 64 ~~C~~C~~~~H~~C-----l~p~~~---~~p~~~W~C~~C~~~~ 99 (864)
-.|..|+..|...= -.||-+ ++ ..+|.||.|...+
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cg~~K 45 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDL-PDDWVCPLCGAPK 45 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGS-CTTCBCTTTCCBG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHC-CCCCcCCCCCCCH
Confidence 45777776664321 111211 22 4589999998743
No 410
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.02 E-value=14 Score=29.81 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=31.7
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCC--CCCCCcccCccCCCCc
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKA--PPSGSWRCPECVSPLN 100 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~--~p~~~W~C~~C~~~~~ 100 (864)
...|.+|...-. .+. -.|+-.||..|+..-+.. ...+.-.||.|.....
T Consensus 19 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 457999986532 222 269999999999654322 1234568999986543
No 411
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=34.94 E-value=8.1 Score=34.23 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=31.6
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|...-. -+. -.|+-.||..|+..-+. .+...||.|....
T Consensus 51 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFR---AQVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred cCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHh---HCcCCCCCCCccC
Confidence 3467999986532 222 27999999999976554 2345899998654
No 412
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=34.60 E-value=39 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=23.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
+..-.-|.|||..++.+...+......++|+|
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 44566799999999999988876623466666
No 413
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.14 E-value=55 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
...+.+|.-+.|+|||..|-++...+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999887776655
No 414
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.05 E-value=52 Score=28.26 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=22.6
Q ss_pred CceEEEEeccHHHHHHHHHHHhhCCCcEEE
Q 002937 624 GHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (864)
Q Consensus 624 g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~ 653 (864)
+.+|||..........|...|...|+.+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 35 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEI 35 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEE
Confidence 567888888888888888888877776543
No 415
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=33.97 E-value=53 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~ 327 (864)
..+.+|.-+.|+|||..|-++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999988777554
No 416
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=33.46 E-value=73 Score=27.07 Aligned_cols=95 Identities=8% Similarity=-0.067 Sum_probs=43.2
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC--CCCceEEEeeccccccCcCC--CCCCE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGLGINL--ATADT 698 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~--~~~~~v~Llst~a~~~GinL--~~a~~ 698 (864)
.|..|..++.....++.+ ....+....+|-.++...-...++..+.. .....+++++......-... .+|+.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 466666666555554444 33456677777555443333444444432 12222334443322211111 12333
Q ss_pred EEEeCCCCCcchhhHHHHHHHHhCC
Q 002937 699 VIIYDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 699 VI~~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
++.-|.++..+.+++.++++-++
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC----
T ss_pred --heeCCCCHHHHHHHHHHhhccCC
Confidence 34456777777777777665443
No 417
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=33.37 E-value=20 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=30.7
Q ss_pred cccccccccCCc--eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
+..|.+|...-. ... .|+-.||..|+..-+. .+...||.|...
T Consensus 15 ~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--PCNHTLCKPCFQSTVE---KASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--TTSCEECHHHHCCCCC---TTTSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc--CCCCHHhHHHHHHHHh---HCcCCCCCCCcc
Confidence 467999985422 222 6999999999976553 345789999864
No 418
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.98 E-value=7.3 Score=31.90 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=31.7
Q ss_pred cccccccccCCce----eecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESENL----MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~l----~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...-.. ..--.|+-.||..|+..-+... .+.-.||.|....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcc
Confidence 4569999854211 2223699999999997655332 2456899998753
No 419
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=32.95 E-value=10 Score=24.82 Aligned_cols=11 Identities=27% Similarity=0.912 Sum_probs=9.4
Q ss_pred CCCcccCccCC
Q 002937 87 SGSWRCPECVS 97 (864)
Q Consensus 87 ~~~W~C~~C~~ 97 (864)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999975
No 420
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.70 E-value=21 Score=34.59 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 002937 307 VILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l 328 (864)
.++.-.+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5678899999999988876554
No 421
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.58 E-value=8.2 Score=29.32 Aligned_cols=44 Identities=20% Similarity=0.579 Sum_probs=28.8
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCcc
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPEC 95 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C 95 (864)
....|.+|...-. .+.- .|+-.||..|+..-+.. ..+.-.||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 3467999986532 2222 79999999999765542 1234578887
No 422
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.58 E-value=2.4e+02 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=14.1
Q ss_pred ceEEEEeccHHHHHHHHHHHhhCCCcE
Q 002937 625 HRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (864)
Q Consensus 625 ~kvlIFsq~~~~ld~L~~~L~~~g~~~ 651 (864)
.+|||..........|...|...|+.+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v 32 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTV 32 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 355555555555555555555555443
No 423
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=31.52 E-value=15 Score=29.56 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.2
Q ss_pred heeeeeeecCCccccccccChHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
..+|+|-|.|+.-.-..|+|++.|.
T Consensus 38 ~~~Y~VHY~gwnkr~DEWV~~~ri~ 62 (76)
T 2lcc_A 38 EVLYLVHYYGWNVRYDEWVKADRII 62 (76)
T ss_dssp EEEEEEEETTSCCSSCEEEEGGGEE
T ss_pred ceEEEEEeCCcCCCceEecChhhcc
Confidence 4789999999999999999988664
No 424
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=31.20 E-value=14 Score=31.68 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=32.7
Q ss_pred ccccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
....|.+|...- +-+....|+-.||..|+...+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCccc
Confidence 346799998653 34555689999999999765543 25799998643
No 425
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.03 E-value=42 Score=35.77 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
...+.+|.-++|+|||..|-++...+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999887777665
No 426
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.92 E-value=16 Score=31.44 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=30.9
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
...|.+|...-. -+. -.|+-.||..|+...+... .+...||.|...
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQK-KGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCC
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCc
Confidence 457999986432 111 3699999999987655432 345689999853
No 427
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=30.79 E-value=14 Score=29.43 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...=. -+.. .|+-.|+..|+..-+. .+.-.||.|....
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~---~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQTYERSSIQKWLD---AGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHT---TTCCBCTTTCCBC
T ss_pred cCCCCCccccccCCEEc-CCCCeecHHHHHHHHH---HCcCCCCCCcCCC
Confidence 467999986532 2222 6999999999976654 2466899998643
No 428
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=30.72 E-value=59 Score=34.56 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccH
Q 002937 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (864)
Q Consensus 293 ~v~~l~~--~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll 345 (864)
++..+.. .+..+.-.+|+-+.|+|||..++.++..+...+ +++++|......
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g-~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCCCc
Confidence 4444432 345667788999999999999999888776543 477877775444
No 429
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=30.33 E-value=28 Score=35.15 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+.+|.-++|+|||..|-++...+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4568899999999999988777763
No 430
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=30.27 E-value=1.3e+02 Score=26.14 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHcCceEEEEec------cHHHHHHHHHHHhhCCCc-EEEEeccCCHHHHHHHHHH
Q 002937 616 MMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDR 669 (864)
Q Consensus 616 ll~~l~~~g~kvlIFsq------~~~~ld~L~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~ 669 (864)
.++.+.+ .++|+||+. +=.......++|...|++ |..++=....+.++.+.+.
T Consensus 12 ~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~ 71 (118)
T 2wem_A 12 QLDALVK-KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71 (118)
T ss_dssp HHHHHHH-HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH
T ss_pred HHHHHhc-cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 3444444 458999988 456778888899999995 9888866666666655443
No 431
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.62 E-value=48 Score=36.30 Aligned_cols=36 Identities=28% Similarity=0.195 Sum_probs=25.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 306 ~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
..+++-..|.|||.++..++..+......++++|.-
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 345567899999999999998887762235555543
No 432
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=29.55 E-value=13 Score=31.21 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=31.4
Q ss_pred cccccccccCC-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
...|.+|...- +-+....|+-.||..|+..-+.. .-.||.|...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 66 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVT 66 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCB
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCc
Confidence 46799998653 34444579999999999765543 2479999864
No 433
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.51 E-value=74 Score=36.49 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-------------CCceEEEeccccHHH
Q 002937 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-------------ISPHLVVAPLSTLRN 347 (864)
Q Consensus 291 ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~-------------~~~~LIV~P~sll~q 347 (864)
..++.-+......+...+|.-+.|+|||..+-++...+.... ..|.+.++|.....+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 344444555557788999999999999998877766543221 136666777655443
No 434
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=29.33 E-value=62 Score=41.85 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHH
Q 002937 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (864)
Q Consensus 293 ~v~~l~~--~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~q 347 (864)
.++.+.. .+..+...+|+-++|.|||..++.++..+...+ ++++++.-.....+
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g-~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDP 774 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECTTSCCCH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC-CCeEEEeccchHHH
Confidence 4555543 456778899999999999999999888776532 47788776555544
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=29.27 E-value=32 Score=35.20 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
...+.+|.-+.|+|||..+-++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35678899999999999887776654
No 436
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=29.26 E-value=1.7e+02 Score=28.54 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=46.8
Q ss_pred cCceEEEEeccHHHHHH----HHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeecc-cc-----ccCcC
Q 002937 623 QGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR-AG-----GLGIN 692 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~----L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~-a~-----~~Gin 692 (864)
.+.++||.+.....+.. +..++...++.+..+.|+.+.......+.. +.. ++++|. .. ...++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~---I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVE---ICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCS---EEEECHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCC---EEEECHHHHHHHHHcCCCC
Confidence 36689999988765544 444555668999999999887766555432 122 355542 11 12356
Q ss_pred CCCCCEEEEeCC
Q 002937 693 LATADTVIIYDS 704 (864)
Q Consensus 693 L~~a~~VI~~d~ 704 (864)
+...+.+|+=+.
T Consensus 174 ~~~~~~lViDEa 185 (242)
T 3fe2_A 174 LRRTTYLVLDEA 185 (242)
T ss_dssp CTTCCEEEETTH
T ss_pred cccccEEEEeCH
Confidence 777777766443
No 437
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=29.08 E-value=1.5e+02 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=11.2
Q ss_pred eEEEEeccHHHHHHHHHHHhhC
Q 002937 626 RVLIYSQFQHMLDLLEDYLTFK 647 (864)
Q Consensus 626 kvlIFsq~~~~ld~L~~~L~~~ 647 (864)
++||..........+...|...
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~ 26 (135)
T 3eqz_A 5 RVFIVDDDTLTCNLLKTIVEPI 26 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT
T ss_pred eEEEEeCCHHHHHHHHHHHHhh
Confidence 4555555555555555555443
No 438
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.90 E-value=41 Score=32.88 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=24.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P 341 (864)
|..-.-|.|||..++.++..+...+ .++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG-RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC-CeEEEEeC
Confidence 4456789999999999998887653 36777643
No 439
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=28.84 E-value=9.7 Score=32.86 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=21.9
Q ss_pred eeeeeeecCCccccccccChHHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
.+|||-++|++-.-+.|||++.|.
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~drll 82 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGEE
T ss_pred cEEEEEECCcCcchhhccChhhhh
Confidence 579999999999999999998765
No 440
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=28.74 E-value=2.2e+02 Score=23.58 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHHHcCceEEEEec------cHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcC
Q 002937 615 KMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (864)
Q Consensus 615 ~ll~~l~~~g~kvlIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~ 672 (864)
+.+..+.. .++|+||+. +=.....+..+|...|++|..++=......++.+...+..
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 33444444 447999985 4456777888888889999999887777666666665543
No 441
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=28.37 E-value=32 Score=29.27 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=31.9
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCC
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG 659 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 659 (864)
..+++++|||+.-.........|...|+++..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34678999998877777888899999999999999864
No 442
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=28.11 E-value=80 Score=34.85 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=24.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
....+.+|..++|+|||..+-++...+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345678999999999999998888877543
No 443
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=28.10 E-value=2e+02 Score=30.96 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=64.7
Q ss_pred cccHHHHHHHHHHHHH-HcCceEEEEeccHHHHHHHHHHHhh-CCC---cEEEEeccCCHHHHHHHHHHhcCCCCCceEE
Q 002937 606 SSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTF-KKW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~-~~g~kvlIFsq~~~~ld~L~~~L~~-~g~---~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~ 680 (864)
.+||-.....++..+. ..+.++||.+.....+.-..+.+.. .|. ++..++|+....++...... .. ++
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~--iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AK--VI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CS--EE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-----CC--EE
Confidence 5788766655554433 4678999999987776655555543 255 89999999988776655432 12 34
Q ss_pred Eeeccccc-----cCcCCCCCCEEEEeCCCC--CcchhhHHHHHHHH
Q 002937 681 LLSTRAGG-----LGINLATADTVIIYDSDW--NPHADLQAMARAHR 720 (864)
Q Consensus 681 Llst~a~~-----~GinL~~a~~VI~~d~~w--np~~~~Qa~gR~~R 720 (864)
+.+..... ..+++...+.||+=+..- +...+.+...+..+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 44444332 145677778887755432 23344444444443
No 444
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.00 E-value=42 Score=32.01 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+...+|.-.+|+|||..+-.+...+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456678899999999999887777665
No 445
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.96 E-value=35 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=29.7
Q ss_pred ccccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
....|.+|...-. -+.-..|+-.|+..|+...+. -.||.|...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 3567999986532 222226898999999966554 469999854
No 446
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.94 E-value=54 Score=31.57 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=21.6
Q ss_pred eeEEEecccccccC---cccHHHHHHHhccc----ccEEEeecCC
Q 002937 429 WQCMIVDEGHRLKN---KDSKLFSSLKQYST----RHRVLLTGTP 466 (864)
Q Consensus 429 w~~vIvDEaH~lkn---~~s~~~~~l~~l~~----~~rllLTgTP 466 (864)
-.+|||||||.+-+ ........+..+.. ...++|.|.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 45899999999832 22222233334432 2347777777
No 447
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.91 E-value=28 Score=33.78 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=18.9
Q ss_pred ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCCc
Q 002937 62 NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (864)
Q Consensus 62 ~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~ 100 (864)
....|..|+..|-- . .| |.||.|..+..
T Consensus 170 ~~~~C~~CG~i~~g---~-----~p---~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKG---E-----DF---EKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEES---S-----CC---SBCTTTCCBGG
T ss_pred cEEEECCCCCEEcC---c-----CC---CCCCCCCCChH
Confidence 36778888876541 2 22 99999986543
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=27.75 E-value=1.2e+02 Score=30.56 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.0
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEeccccHHHHHHHHHH
Q 002937 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFAT 354 (864)
Q Consensus 302 ~~~~~~ILade~GlGKTi~ai~~i~~l~~~---------~~~~~LIV~P~sll~qW~~E~~~ 354 (864)
..+.-.+|+-+.|+|||..+..++..+... ..++++++.-.....+....+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 566778899999999999988877755432 13467777665555444333333
No 449
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=27.46 E-value=9.8 Score=33.60 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.4
Q ss_pred heeeeeeecCCccccccccChHHHHH
Q 002937 130 VKQYLVKWKGLSYLHCTWVPEKEFLK 155 (864)
Q Consensus 130 ~~eylVKw~~~S~~h~~W~~~~~l~~ 155 (864)
...|||.|.|++..-..|||++.|..
T Consensus 74 ~~~Y~VHY~GWn~~WDEWV~e~rvlk 99 (130)
T 3e9g_A 74 GKCFFIHYQGWKSSWDEWVGYDRIRA 99 (130)
T ss_dssp SCEEEEEETTSCGGGCEEEETTTEEC
T ss_pred CceEEEEeCCCCCChhhccCHhhhhc
Confidence 36899999999999999999987653
No 450
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=27.46 E-value=61 Score=31.66 Aligned_cols=50 Identities=12% Similarity=-0.036 Sum_probs=31.4
Q ss_pred HHHHHH-HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecc
Q 002937 293 GLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL 342 (864)
Q Consensus 293 ~v~~l~-~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~-----~~~~~LIV~P~ 342 (864)
++.++. -.+..+.-..|+-+.|+|||..+..++...... ..++++.+.-.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 344443 234556667889999999999988877753221 12356666543
No 451
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=27.24 E-value=2e+02 Score=23.52 Aligned_cols=89 Identities=11% Similarity=0.087 Sum_probs=39.3
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCC-CCCceEEEeeccccccCcCCC--CCCEE
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGGLGINLA--TADTV 699 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~-~~~~~v~Llst~a~~~GinL~--~a~~V 699 (864)
.|..+..++.....+..+ .........+|-.++...-.+.++.++.. ....+ ++++...... .... +++..
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i-i~~s~~~~~~-~~~~~~g~~~~ 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKI-ILLTAYSHYR-SDMSSWAADEY 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE-EEEESCGGGG-GCGGGGGSSEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeE-EEEECCcchH-HHHHhccccce
Confidence 466666555544444443 23455666666544322222233333221 12223 4444332211 2211 23332
Q ss_pred EEeCCCCCcchhhHHHHHHH
Q 002937 700 IIYDSDWNPHADLQAMARAH 719 (864)
Q Consensus 700 I~~d~~wnp~~~~Qa~gR~~ 719 (864)
+.-|+++....+++.++.
T Consensus 98 --l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 --VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp --EECCSSTHHHHHHHHHHT
T ss_pred --EECCCCHHHHHHHHHHHh
Confidence 234667777777766653
No 452
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=27.20 E-value=42 Score=31.33 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
....+|.-.+|+|||..+-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999987777665
No 453
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.18 E-value=25 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.757 Sum_probs=28.1
Q ss_pred cccccccccccC-------------C-ceeecCCCCCcccccccCCCCCCCCCCCcccCccCCC
Q 002937 49 AKDDSCQACGES-------------E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (864)
Q Consensus 49 ~~~~~C~~C~~~-------------~-~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~ 98 (864)
....+|.+||.. | ..+.|..|...||+. .+.||.|-+.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCC
Confidence 345789999831 1 279999999999843 3469999874
No 454
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.97 E-value=17 Score=29.93 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.9
Q ss_pred eeeeeeecCCccccccccChHHHH
Q 002937 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (864)
Q Consensus 131 ~eylVKw~~~S~~h~~W~~~~~l~ 154 (864)
.+|+|-|.|+.-...+||+.+.|.
T Consensus 44 ~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 44 KLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp CCEEEEECSSCSCCCEEECTTTBC
T ss_pred cEEEEEeCCCCcccccccCHhHcc
Confidence 789999999999999999998763
No 455
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.69 E-value=52 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=24.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
|..-.-|.|||.+++.++..+...+ .++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG-HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC-CcEEEEE
Confidence 4566789999999999988887653 3677764
No 456
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.45 E-value=2.2e+02 Score=25.24 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCceEEEEec------cHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhc
Q 002937 614 DKMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (864)
Q Consensus 614 ~~ll~~l~~~g~kvlIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn 671 (864)
.+.+..+... .+|+||+. +-.....+..+|...|++|..++=......++.+.+...
T Consensus 25 ~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G 87 (135)
T 2wci_A 25 IEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 87 (135)
T ss_dssp HHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC
Confidence 3444444443 47999977 455678888999999999999988777666666655443
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=25.83 E-value=41 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=21.9
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 310 ade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
.-.-|.|||.+++.++..+...+ .++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G-~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG-KTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC-CcEEEE
Confidence 34679999999999988887653 366665
No 458
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.36 E-value=3.1e+02 Score=23.32 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=10.7
Q ss_pred CCCCCcchhhHHHHHHHH
Q 002937 703 DSDWNPHADLQAMARAHR 720 (864)
Q Consensus 703 d~~wnp~~~~Qa~gR~~R 720 (864)
.-|.++..+.+++.++.+
T Consensus 109 ~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 109 EKPIDENLLILSLHRAID 126 (140)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 345566666666666654
No 459
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.23 E-value=98 Score=33.09 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW~ 349 (864)
.+.++++.-.+|+|||..+-.++..+... ..+++|+=|..-...+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~ 79 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPEREYKEMC 79 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCCSHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcCHHHHH
Confidence 56788899999999998876666665543 34677777765544433
No 460
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.02 E-value=2.8e+02 Score=25.48 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccccCcC
Q 002937 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (864)
Q Consensus 613 l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~~Gin 692 (864)
+.+.+.........+.|.+........|.+.|...|+++..+++... .| ..+ +.+.|--.+-|+
T Consensus 50 i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~---v~v~t~~~~KGl- 113 (174)
T 3dmn_A 50 VVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APG---VIVVPSFLAKGL- 113 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSS---EEEEEGGGCTTC-
T ss_pred HHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCC---eEEEEccccCCc-
Confidence 33334332233467888888888899999999999999988876542 12 222 455565566774
Q ss_pred CCCCCEEEEeCCCC
Q 002937 693 LATADTVIIYDSDW 706 (864)
Q Consensus 693 L~~a~~VI~~d~~w 706 (864)
..+.||+++++.
T Consensus 114 --Ef~~V~~~~~~~ 125 (174)
T 3dmn_A 114 --EFDAVIVWNANQ 125 (174)
T ss_dssp --CEEEEEEETCBT
T ss_pred --CCCEEEEecCCc
Confidence 478999998764
No 461
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=25.00 E-value=59 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.047 Sum_probs=24.9
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCceEEE--eccccHHHH
Q 002937 311 DEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTLRNW 348 (864)
Q Consensus 311 de~GlGKTi~ai~~i~~l~~~~~~~~LIV--~P~sll~qW 348 (864)
---|.|||.+++.++..+...+ .++|+| -|......|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G-~rVlliD~D~q~~~~~~ 82 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN-LKVLMIDKDLQATLTKD 82 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT-CCEEEEEECTTCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHH
Confidence 4789999999999888876654 366664 333433444
No 462
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.80 E-value=1.6e+02 Score=36.24 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHH----HHhhCCC----cEEEEeccCCHHHHHHHHHHhcCCCCCc
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLED----YLTFKKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~----~L~~~g~----~~~~i~G~~~~~~R~~~i~~Fn~~~~~~ 677 (864)
.|||-.+..-++..+...|.++||.+.....+..+.+ ++...|+ .+..+.|+++..++.+..+.+.. ..
T Consensus 81 GSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~- 157 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FK- 157 (1054)
T ss_dssp TSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS-
T ss_pred CCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CC-
Confidence 6888876667777777778899999998776554444 4445577 89999999998888777777755 22
Q ss_pred eEEEeeccccccCcC-CCCCCEEEEeC
Q 002937 678 FCFLLSTRAGGLGIN-LATADTVIIYD 703 (864)
Q Consensus 678 ~v~Llst~a~~~Gin-L~~a~~VI~~d 703 (864)
+++.+...+-.-+. |...+.||+=+
T Consensus 158 -IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 158 -IVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp -EEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred -EEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 23444333322222 55666666643
No 463
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=24.71 E-value=54 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
|..-.-|.|||..|+.+...+...+ .++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG-KKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-CcEEEEE
Confidence 4456779999999999998887654 3666653
No 464
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=24.56 E-value=54 Score=32.86 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
+..-.-|.|||..|+.++..+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G-~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG-KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 4456779999999999988887654 3677664
No 465
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=24.54 E-value=50 Score=37.07 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=25.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH
Q 002937 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA 326 (864)
Q Consensus 285 ~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~ 326 (864)
.+.+.++..++ .....+.+.++.-++|+|||...-+++.
T Consensus 244 ~~~~~~l~~l~---~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 244 TVPSGVLAYLW---LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp SSCHHHHHHHH---HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCHHHHHHHH---HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34445555444 3446777889999999999976544433
No 466
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.53 E-value=28 Score=27.21 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=3.3
Q ss_pred cccccc
Q 002937 53 SCQACG 58 (864)
Q Consensus 53 ~C~~C~ 58 (864)
.|.+|+
T Consensus 10 ~CP~ck 15 (68)
T 2hf1_A 10 VCPLCK 15 (68)
T ss_dssp BCTTTC
T ss_pred ECCCCC
Confidence 455555
No 467
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.43 E-value=2.4e+02 Score=23.58 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=14.1
Q ss_pred eCCCCCcchhhHHHHHHHHhCC
Q 002937 702 YDSDWNPHADLQAMARAHRLGQ 723 (864)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~RiGQ 723 (864)
+.-|.++....+++.++.+.++
T Consensus 104 l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 104 LEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHHHHhcCC
Confidence 3446677777777777766544
No 468
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.20 E-value=29 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=10.4
Q ss_pred cccccccC------CceeecCCCCCcc
Q 002937 53 SCQACGES------ENLMSCDTCTYAY 73 (864)
Q Consensus 53 ~C~~C~~~------~~l~~C~~C~~~~ 73 (864)
.|.+|+.+ +..|.|..|+++|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 46666642 1234455555555
No 469
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.19 E-value=29 Score=27.24 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=5.3
Q ss_pred eeecCCCCCcc
Q 002937 63 LMSCDTCTYAY 73 (864)
Q Consensus 63 l~~C~~C~~~~ 73 (864)
.+.|..|+++|
T Consensus 26 ~LiC~~cg~~Y 36 (69)
T 2pk7_A 26 ELISKGAGLAY 36 (69)
T ss_dssp EEEETTTTEEE
T ss_pred EEEcCCCCcEe
Confidence 34455555544
No 470
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.04 E-value=58 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.+...+|.-.+|+|||..+-.+...+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45668899999999999887766654
No 471
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.03 E-value=29 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=10.4
Q ss_pred cccccccC------CceeecCCCCCcc
Q 002937 53 SCQACGES------ENLMSCDTCTYAY 73 (864)
Q Consensus 53 ~C~~C~~~------~~l~~C~~C~~~~ 73 (864)
.|.+|+.+ ...|.|..|+++|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46666632 1234455555555
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=24.01 E-value=43 Score=31.64 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLA 326 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~ 326 (864)
.+.+.++.-+.|.|||..|++++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567888999999999999988887
No 473
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.96 E-value=1.1e+02 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..|.+|.-+.|+|||..+-++...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999998876665543
No 474
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=23.93 E-value=1.4e+02 Score=32.50 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 284 ~~L~~yQ~~~v~~l~~~~~~~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
..+.+-+...+..+. ...++-.++.-++|+|||...-+++..+
T Consensus 149 Lg~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SCCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 345566666665552 2334446789999999998866666554
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=23.93 E-value=87 Score=33.21 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCCc--eEEEcCCCCcHHHHHHHHHHHH
Q 002937 294 LNFLRFSWSKQTH--VILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 294 v~~l~~~~~~~~~--~ILade~GlGKTi~ai~~i~~l 328 (864)
+..+......+.. .+|.-.||+|||..+-++...+
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444445544 7899999999998876665544
No 476
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.89 E-value=2.7e+02 Score=24.11 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=38.0
Q ss_pred CceEEEEecc------HHHHHHHHHHHhhCCC-cEEEEeccCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q 002937 624 GHRVLIYSQF------QHMLDLLEDYLTFKKW-QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (864)
Q Consensus 624 g~kvlIFsq~------~~~ld~L~~~L~~~g~-~~~~i~G~~~~~~R~~~i~~Fn~~~~~~~v~Llst~a~~ 688 (864)
.++|+||+-. -.......+.|...|+ +|..++=....+.|+.+.+.-+. ..-.-+|+=..-.||
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~-~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW-PTIPQVYLNGEFVGG 89 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTC-CSSCEEEETTEEEEC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccC-CCCCeEeECCEEECC
Confidence 3599999653 3445566677788887 58888776666666655544433 333333544433343
No 477
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.78 E-value=54 Score=32.87 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=22.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 309 LADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
..---|.|||.+|+.+...+. .+ .++|+|
T Consensus 33 ~s~kGGvGKTT~a~~LA~~la-~g-~~Vlli 61 (267)
T 3k9g_A 33 ASIKGGVGKSTSAIILATLLS-KN-NKVLLI 61 (267)
T ss_dssp CCSSSSSCHHHHHHHHHHHHT-TT-SCEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHH-CC-CCEEEE
Confidence 356778999999999998887 43 466666
No 478
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.57 E-value=21 Score=27.20 Aligned_cols=46 Identities=28% Similarity=0.704 Sum_probs=30.3
Q ss_pred cccccccccC---Cc-e-eecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGES---EN-L-MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~---~~-l-~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
+..|.+|... +. . +.=..|+-.||..|+..-+.. +.-.||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCcc
Confidence 3569999872 22 1 122479999999999654322 345799998654
No 479
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=23.51 E-value=51 Score=29.97 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~l~~ 330 (864)
.+...+|.-+.|+|||..+-++...+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6777889999999999887777766543
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=23.40 E-value=42 Score=32.53 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 002937 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (864)
Q Consensus 303 ~~~~~ILade~GlGKTi~ai~~i~~ 327 (864)
.+.+.+|.-.+|+|||-.|+.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566789999999999988887764
No 481
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=22.90 E-value=7 Score=34.81 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=33.8
Q ss_pred cccccccccccC-------CceeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 49 AKDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 49 ~~~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
++...|.+|... +.......|+-.||..|+.+.+.. ...||.|....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcC
Confidence 345679999753 334456689999999999876643 24899998644
No 482
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=22.86 E-value=62 Score=26.87 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=31.2
Q ss_pred cCceEEEEeccHHHHHHHHHHHhhCCCcEEEEeccCC
Q 002937 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG 659 (864)
Q Consensus 623 ~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 659 (864)
.+++++|||+.-.........|...|+++..++|+..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4679999999877777888899999999999999853
No 483
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=22.71 E-value=18 Score=33.29 Aligned_cols=45 Identities=27% Similarity=0.543 Sum_probs=31.2
Q ss_pred cccccccccCCc-eeecCCCCCcccccccCCCCCCCCCCCcccCccCCCC
Q 002937 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (864)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~ 99 (864)
...|.+|...-. -+. -.|+-.|+..|+...+.. +.-.||.|....
T Consensus 78 ~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKA---QVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHh---CCCcCCCCCccC
Confidence 467999986532 222 479999999999765542 345799998654
No 484
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=22.68 E-value=5.5e+02 Score=25.13 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=56.1
Q ss_pred cccHHHH-HHHHHHHHHH------cCceEEEEeccHHHHHHH----HHHHhhCCCcEEEEeccCCHHHHHHHHHHhcCCC
Q 002937 606 SSGKLQL-LDKMMVKLKE------QGHRVLIYSQFQHMLDLL----EDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (864)
Q Consensus 606 ~s~Kl~~-l~~ll~~l~~------~g~kvlIFsq~~~~ld~L----~~~L~~~g~~~~~i~G~~~~~~R~~~i~~Fn~~~ 674 (864)
.+||-.. +.-++..+.. .+.++||.+.....+.-+ ..++...+..+..+.|+.........+. .+
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~- 176 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG- 176 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-
Confidence 5788754 4455555543 578899999987665544 4444556788899999887665544432 21
Q ss_pred CCceEEEeecc------c-cccCcCCCCCCEEEEeC
Q 002937 675 SSRFCFLLSTR------A-GGLGINLATADTVIIYD 703 (864)
Q Consensus 675 ~~~~v~Llst~------a-~~~GinL~~a~~VI~~d 703 (864)
.. ++++|- . .+.++++...+.||+=+
T Consensus 177 ~~---Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 177 IN---IIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp CS---EEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred CC---EEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 22 456651 1 22356777888777644
No 485
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.62 E-value=1.2e+02 Score=23.94 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=27.3
Q ss_pred HcCceEEEEeccHHHHHHHHHHHhhCCCc-EEEEeccCC
Q 002937 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVG 659 (864)
Q Consensus 622 ~~g~kvlIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~ 659 (864)
..+.+++|||+.-.........|...|++ +..+ |+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999866667778888888986 4444 7643
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=22.36 E-value=73 Score=34.93 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
.++.+|...+|+|||..|-++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999999887776654
No 487
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=22.28 E-value=49 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=22.0
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 310 ade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
.-.-|.|||.+|+.+...+...+ .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G-~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG-KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC-CeEEEE
Confidence 44679999999999998887654 356554
No 488
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.16 E-value=34 Score=26.68 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=12.3
Q ss_pred ccccccccC------CceeecCCCCCccc
Q 002937 52 DSCQACGES------ENLMSCDTCTYAYH 74 (864)
Q Consensus 52 ~~C~~C~~~------~~l~~C~~C~~~~H 74 (864)
-.|.+|+.+ +.-|.|..|+++|=
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 356666643 22445666666553
No 489
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=21.92 E-value=46 Score=35.88 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=21.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEE
Q 002937 309 LADEMGLGKTIQSIAFLASLFGE-----RISPHLVV 339 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~-----~~~~~LIV 339 (864)
..---|.|||.+|+.+...+... ...++|+|
T Consensus 114 ~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 114 SNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 34567899999999998888642 22356555
No 490
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.77 E-value=1.1e+02 Score=35.24 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHcCceEEEEeccHHHHHHHHHHHhhCCCcEEEEe
Q 002937 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 655 (864)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFsq~~~~ld~L~~~L~~~g~~~~~i~ 655 (864)
.+||-..+..++..+...|.+|||-+.....+|-|.+.|...+.++.|+.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 58999999999999999999999999999999999999988899988874
No 491
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.77 E-value=36 Score=31.34 Aligned_cols=45 Identities=20% Similarity=0.588 Sum_probs=31.8
Q ss_pred ccccccccccC-----CceeecCCCCCcccccccCCCCCCCCCCCcccCccCC
Q 002937 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (864)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~ 97 (864)
+...|..|+.+ +.-..|..|....=..|-. ...+.+.|.|..|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc---ccCCCCcEeeHHHHH
Confidence 56889999976 2345677777666666652 223578899999974
No 492
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.72 E-value=51 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=22.9
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 309 LADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
++--=|.|||.+++-+...|...+. ++|+|
T Consensus 53 IaGKGGVGKTTtavNLA~aLA~~Gk-kVllI 82 (314)
T 3fwy_A 53 VYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 82 (314)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EECCCccCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4556799999999999988877654 45555
No 493
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=21.63 E-value=60 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=28.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEeccccHHHH
Q 002937 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (864)
Q Consensus 308 ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sll~qW 348 (864)
++.---|.|||.+|+++...+...+.+..||=+|.+.+.+|
T Consensus 6 ~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~~~~~l~~~ 46 (374)
T 3igf_A 6 TFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLPLL 46 (374)
T ss_dssp EEECSBHHHHHHHHHHHHHHHHHTTCCEEEEECSCSHHHHH
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeCCCCChHHh
Confidence 34445589999999998888877655444454566655554
No 494
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=21.62 E-value=3.9e+02 Score=25.12 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=54.9
Q ss_pred cccHHHHHHHH-HHHHHH--cCceEEEEeccHHHHHHHHHHHhh----C-CCcEEEEeccCCHHHHHHHHHHhcCCCCCc
Q 002937 606 SSGKLQLLDKM-MVKLKE--QGHRVLIYSQFQHMLDLLEDYLTF----K-KWQYERIDGKVGGAERQIRIDRFNAKNSSR 677 (864)
Q Consensus 606 ~s~Kl~~l~~l-l~~l~~--~g~kvlIFsq~~~~ld~L~~~L~~----~-g~~~~~i~G~~~~~~R~~~i~~Fn~~~~~~ 677 (864)
.+||-....-. +..+.. .+.++||.+.....+..+.+.+.. . ++++..+.|+.+...+...+.. ....
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~- 136 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH- 136 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCS-
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCC-
Confidence 57886543333 333222 234899999987776665555443 2 7899999999887666554432 1222
Q ss_pred eEEEeecc-cc-----ccCcCCCCCCEEEEeCC
Q 002937 678 FCFLLSTR-AG-----GLGINLATADTVIIYDS 704 (864)
Q Consensus 678 ~v~Llst~-a~-----~~GinL~~a~~VI~~d~ 704 (864)
++++|- .. ...+++...+.||+=+.
T Consensus 137 --i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 137 --IVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp --EEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred --EEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 344442 21 23466777888777554
No 495
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.54 E-value=84 Score=29.31 Aligned_cols=28 Identities=29% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l~~~ 331 (864)
+...+|.-.+|+|||.++-.+...+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4456788899999999887777766443
No 496
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=21.50 E-value=1.4e+02 Score=31.83 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecccc
Q 002937 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (864)
Q Consensus 299 ~~~~~~~~~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~P~sl 344 (864)
.........++..++|+|||..|-+ +..+.....+|++.|--..+
T Consensus 155 ~~a~~~~~vli~Ge~GtGK~~lAr~-ih~~s~r~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 155 KISCAECPVLITGESGVGKEVVARL-IHKLSDRSKEPFVALNVASI 199 (387)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHHHH-HHHHSTTTTSCEEEEETTTS
T ss_pred HhcCCCCCeEEecCCCcCHHHHHHH-HHHhcCCCCCCeEEEecCCC
Confidence 3335566789999999999986533 33333333457766654443
No 497
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=21.50 E-value=51 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=23.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 002937 309 LADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (864)
Q Consensus 309 Lade~GlGKTi~ai~~i~~l~~~~~~~~LIV 339 (864)
++---|.|||..|+.++..+...+. ++|+|
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~G~-~Vlli 75 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 75 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EECCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4468899999999999888877643 55555
No 498
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=21.37 E-value=1.1e+02 Score=32.24 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 002937 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (864)
Q Consensus 307 ~ILade~GlGKTi~ai~~i~~l~~~~~~~~LIV~ 340 (864)
.+..-.-|.|||.+|.+++..+...+ .++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G-~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG-LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS-CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 45667889999999999988887664 3666665
No 499
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.36 E-value=63 Score=29.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
-++.+|.-.+|+|||.++-.+...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999886666554
No 500
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=21.35 E-value=65 Score=31.11 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=19.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 002937 304 QTHVILADEMGLGKTIQSIAFLASL 328 (864)
Q Consensus 304 ~~~~ILade~GlGKTi~ai~~i~~l 328 (864)
+...+|.-.+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4467788899999999987766655
Done!