BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002938
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 207/772 (26%), Positives = 337/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 148 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFG 207
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 208 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 266
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 267 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 322
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 323 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 382
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 383 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 442
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 443 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 502
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 503 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 558
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 559 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 614
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 615 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 672
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 673 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 731
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 732 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 786
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 787 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 837
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 838 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 889
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 246 bits (627), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 207/772 (26%), Positives = 337/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 148 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFG 207
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 208 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 266
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 267 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 322
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 323 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 382
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 383 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 442
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 443 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 502
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 503 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 558
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 559 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 614
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 615 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 672
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 673 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 731
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 732 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 786
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 787 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 837
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 838 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 889
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 207/772 (26%), Positives = 337/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 148 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFG 207
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 208 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 266
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 267 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 322
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 323 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 382
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 383 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 442
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 443 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 502
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 503 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 558
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 559 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 614
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 615 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 672
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 673 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 731
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 732 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 786
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 787 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 837
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 838 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 889
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 207/772 (26%), Positives = 337/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 118 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFG 177
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 178 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 236
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 237 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 292
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 293 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 352
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 353 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 412
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 413 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 472
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 473 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 528
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 529 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 584
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 585 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 642
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 643 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 701
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 702 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 756
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 757 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 807
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 808 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 859
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 206/772 (26%), Positives = 337/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 148 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFG 207
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 208 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 266
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 267 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 322
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G +F+++ W Q ++ ++N N A + T Y
Sbjct: 323 KKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 382
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 383 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 442
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 443 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 502
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 503 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 558
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 559 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 614
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 615 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 672
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 673 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 731
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 732 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 786
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 787 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 837
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 838 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 889
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 206/772 (26%), Positives = 336/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K VTP W I PFG
Sbjct: 148 QMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFG 207
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 208 HSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPF 266
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 267 YSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 322
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 323 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 382
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 383 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEML 442
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R+
Sbjct: 443 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQ 502
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V++
Sbjct: 503 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVMH 558
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 559 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 614
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP+G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 615 -KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 672
Query: 505 DKSKPINYINNKSLV-------------EESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N +L ++S F G +GAY+F P
Sbjct: 673 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 731
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q T + G + +G +
Sbjct: 732 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAPEIRNLVDIGSLD---- 786
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G+++
Sbjct: 787 -NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFI 837
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+M RRL DD RG+ + + + VL
Sbjct: 838 EDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVL 889
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 208/772 (26%), Positives = 335/772 (43%), Gaps = 82/772 (10%)
Query: 4 EVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG 63
+ K +V +GQLEF+ GG DEA +H+ +++ Q T G ++K VTP W IDPFG
Sbjct: 118 QXKSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLKQFXNVTPTASWAIDPFG 177
Query: 64 HSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW------QGSRSLGSSAQIF 117
HS Y+L + GF + R Y + + ++ LE +W +G +L + F
Sbjct: 178 HSPTXPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHXXPF 236
Query: 118 -AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 165
+ P P P G F K P + D NV R + V
Sbjct: 237 YSYDIPHTCGPDPKVCCQFDFKRXGSFGLSCPWKVP----PRTISDQNVAARSDLLVDQW 292
Query: 166 ISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNMDGRVN--ALYSTPSIY 220
+A + RTN ++ +G DF+++ W Q ++ ++N N A + T Y
Sbjct: 293 KKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEY 352
Query: 221 TDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQL 276
DA + A +P + DFF YADR+ YW+GY++SRP KR +V+ Y AA L
Sbjct: 353 FDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRXDRVLXHYVRAAEXL 412
Query: 277 EFYIGRSETGHNTDSLADA---LAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXX 333
+ + L A L++ QHHD +TGT K HV DY +R
Sbjct: 413 SAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQXVXQ 472
Query: 334 XXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-----GKNLV----IVIY 384
+ L+ PS S + F L+ S P S ++ S G++++ +V +
Sbjct: 473 QSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTTIILGEDILPSKHVVXH 528
Query: 385 NSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 444
N+L RE ++ V++ V+V + +E+Q+ P D +
Sbjct: 529 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTT---- 584
Query: 445 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSS 504
KY + F VPP G +TY ++ H+ +S + +++ +GQ + F
Sbjct: 585 -KYRIIFKARVPPXGLATYVLTISDSKPEHTSYAS-NLLLRKNPTSLPLGQYPEDVKFGD 642
Query: 505 DKSKPINYINNKS-------------LVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551
+ + N + L ++S F G +GAY+F P
Sbjct: 643 PREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHG-DRSGAYLFLP 701
Query: 552 NGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611
NG GQ + V +G + V + ++Q + +G E+ +V +D+
Sbjct: 702 NGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQT--IXRGGA-PEIRNLVDIGSLDN- 757
Query: 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYM 671
E+V + + +++ FYTD NG FIKR R + P+ NYYPI G ++
Sbjct: 758 --TEIVXRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGXFI 807
Query: 672 QDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVL 723
+D +LL + LGGSS+ GE+E+ RRL DD RG+ + + + VL
Sbjct: 808 EDANTRLTLLTGQPLGGSSLASGELEIXQDRRLASDDERGLGQGVLDNKPVL 859
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 150/253 (59%), Gaps = 11/253 (4%)
Query: 523 VEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGT--FFIKSEGQVPLTVMRGPILDEVHQKI 580
V Q++ +Y A G N+ + Q +GAYIFRPN F+ Q L ++ ++ EVHQ
Sbjct: 35 VRQAFYWYNASTG-NNLSSQASGAYIFRPNQNKPLFVSHWAQTHL--VKASLVQEVHQNF 91
Query: 581 NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFI 640
+ W QV RLY + H+E+E+ VGPIPV DG GKEV++ + L T FYTDSNGR+ +
Sbjct: 92 SAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREIL 151
Query: 641 KRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELML 700
+R R+YR W L EPVAGNYYP+N IY+ D + ++L DR+ GGSS+ DG +ELM+
Sbjct: 152 ERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMV 211
Query: 701 HRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPP 760
HRRLL DD+RGV E LN+ E GL ++G++ +D A R + P
Sbjct: 212 HRRLLKDDARGVGEPLNK------EGSGLWVRGRHLVLLDKKETAAARHRLQAEMEVLAP 265
Query: 761 LLAFTEEDGDSWR 773
+ + G +R
Sbjct: 266 QVVLAQGGGARYR 278
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 130/214 (60%), Gaps = 5/214 (2%)
Query: 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGV--TPRIGWQI 59
Q V++LV G+LEF NGG M+DEA THY +IDQ TLG RF++ FG PR+ W I
Sbjct: 87 QKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHI 146
Query: 60 DPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGS-SAQIFA 118
DPFGHS QA L +++GFD FF+GR+DYQD+ RK +E VW+ S SL +A +F
Sbjct: 147 DPFGHSREQASLF-AQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFT 205
Query: 119 GAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIM 178
P Y PP G + + P+++D + +YN ++ V F+ A Q + RT H +
Sbjct: 206 SVLPNMYNPPEGLCWDMLCADKPVVEDT-RSPEYNAKELVRYFLKLATDQGKLYRTKHTV 264
Query: 179 WTMGTDFKYQYARTWFRQLDKFIHYVNMDGRVNA 212
TMG+DF+Y+ A TWF+ LDK I VN R N
Sbjct: 265 MTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 37/183 (20%)
Query: 288 NTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXXXXLACLVDSPSDNG 347
++ L +A+A+ QHHDAV+GT +QHVANDYA++L+ G+ LA L D
Sbjct: 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKED-- 59
Query: 348 CGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVF 407
F C LNIS CP ++ + +++YN LG K + ++R+PV+ V
Sbjct: 60 -------FAFCRKLNISICPLTQ----TAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVK 108
Query: 408 NSEGKIIESQLV--PPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTI 465
+ GKI+ S +V P +D+ L F VP +GFS Y++
Sbjct: 109 DPGGKIVPSDVVTIPSSDS----------------------QELLFSALVPAVGFSIYSV 146
Query: 466 SSV 468
S +
Sbjct: 147 SQM 149
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 47/73 (64%)
Query: 209 RVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSG 268
RVN LYSTP+ Y +N SW +K DDFFPYAD + +WTGYFSSRPALKRY ++
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 269 YYLAARQLEFYIG 281
+ QLE G
Sbjct: 62 FLQVCNQLEALAG 74
>pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 126
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 778 TTFSGIDSSYSLPDNVAIITLQELDDGKILLRLAHLYQLGEDN--DLSKPTNVELKKLFP 835
T FSG+ LP +V ++TL +LLRL H + +GED+ +LS P ++L LF
Sbjct: 3 TQFSGLRRE--LPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFS 60
Query: 836 RKKIGKVTETSLSANQ 851
I + ET+L+ANQ
Sbjct: 61 AFTITNLRETTLAANQ 76
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 119 GAFPENYEP--PPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNH 176
GAFP Y P G + P ++D + YN+ R D A+ ++ T T
Sbjct: 29 GAFPTTYVKLGPKGYMVYR-----PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQE 81
Query: 177 IMWTMGTDFKYQYARTWFRQLDKFIHYVNMDG 208
++W + D ++ A+T+ + Y+ +DG
Sbjct: 82 LVWLIENDLNFEAAKTYMS-----LRYIYLDG 108
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 119 GAFPENYEP--PPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNH 176
GAFP Y P G + P ++D + YN+ R D A+ ++ T T
Sbjct: 29 GAFPTTYVKLGPKGYMVYR-----PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQE 81
Query: 177 IMWTMGTDFKYQYARTWFRQLDKFIHYVNMDG 208
++W + D ++ A+T+ + Y+ +DG
Sbjct: 82 LVWLIENDLNFEAAKTYMS-----LRYIYLDG 108
>pdb|3LP9|A Chain A, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|B Chain B, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|C Chain C, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|D Chain D, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
Length = 227
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 482 TFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAP 541
FES + +G +F D+ I+Y +N S+V + ++ S YP + T ++
Sbjct: 115 VFESGIDAAYRSTRGKEVYLFKGDQYARIDYGSN-SMVNKEIKSISSGYPCFRNTIFESG 173
Query: 542 QNAGAYIFRPNGTFFIKSEGQVPLTVM---RGPILDEVHQKINEW 583
+A + N +F K + + V + I+D V + ++ W
Sbjct: 174 ADAAFASHKTNEVYFFKDDHYARVKVTPXXKLXIMDGVREIVDYW 218
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 149 LFDYNVQDRVNDF-VAAAISQANITRTNHIMWTM 181
L D N ++ DF +A A+S+ ++T+TNH++ T+
Sbjct: 143 LIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTV 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,429,447
Number of Sequences: 62578
Number of extensions: 1232619
Number of successful extensions: 2727
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2644
Number of HSP's gapped (non-prelim): 34
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)