Query 002938
Match_columns 864
No_of_seqs 254 out of 1197
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 13:47:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 1E-199 2E-204 1640.2 65.8 831 1-861 109-949 (996)
2 PLN02701 alpha-mannosidase 100.0 2E-161 4E-166 1455.2 82.2 809 1-855 104-1018(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 8E-146 2E-150 1213.2 50.5 803 2-854 228-1106(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 5.4E-94 1.2E-98 876.3 70.0 705 2-813 69-822 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 2.4E-76 5.2E-81 633.0 36.0 629 3-816 345-1018(1078)
6 COG0383 AMS1 Alpha-mannosidase 100.0 2.7E-46 5.9E-51 449.3 31.9 598 7-816 264-895 (943)
7 PF01074 Glyco_hydro_38: Glyco 100.0 1.8E-44 3.9E-49 387.3 18.9 208 2-242 63-275 (275)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 3.4E-42 7.4E-47 398.2 37.6 411 379-849 1-437 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.9 3.8E-23 8.2E-28 176.9 2.5 75 247-321 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 1.7E-21 3.8E-26 166.2 6.5 74 248-321 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.4 7.8E-14 1.7E-18 169.4 0.6 291 2-323 69-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 97.6 0.00011 2.3E-09 82.3 7.6 83 3-87 114-197 (360)
13 PF01522 Polysacc_deac_1: Poly 94.7 0.084 1.8E-06 48.8 6.8 76 2-81 47-123 (123)
14 TIGR03212 uraD_N-term-dom puta 94.1 2.3 5E-05 46.0 17.1 80 3-87 107-187 (297)
15 COG1543 Uncharacterized conser 93.4 0.18 3.9E-06 56.1 6.8 80 3-84 127-207 (504)
16 TIGR02764 spore_ybaN_pdaB poly 89.9 1.7 3.7E-05 43.7 9.3 75 3-81 49-124 (191)
17 COG1449 Alpha-amylase/alpha-ma 88.1 10 0.00022 45.4 15.2 74 3-80 183-262 (615)
18 TIGR02884 spore_pdaA delta-lac 87.7 2.6 5.7E-05 43.7 9.0 77 2-81 79-156 (224)
19 TIGR02873 spore_ylxY probable 83.0 6.4 0.00014 42.0 9.3 74 3-80 128-202 (268)
20 TIGR03006 pepcterm_polyde poly 79.1 6.8 0.00015 41.7 7.9 79 3-84 58-139 (265)
21 PRK14582 pgaB outer membrane N 76.9 76 0.0017 38.4 16.5 151 3-208 168-347 (671)
22 PF07481 DUF1521: Domain of Un 72.9 40 0.00087 32.3 10.1 96 488-600 7-103 (171)
23 PRK14581 hmsF outer membrane N 70.1 17 0.00037 43.8 8.8 82 2-86 167-276 (672)
24 PF08672 APC2: Anaphase promot 57.9 9.5 0.00021 30.5 2.6 20 2-21 39-58 (60)
25 PRK15394 4-deoxy-4-formamido-L 44.9 85 0.0018 34.0 8.2 81 3-87 92-176 (296)
26 PRK10148 hypothetical protein; 36.9 12 0.00025 36.0 0.1 17 53-69 123-139 (147)
27 TIGR03593 yidC_nterm membrane 31.3 3.5E+02 0.0076 30.2 10.8 28 489-516 74-101 (366)
28 PF02929 Bgal_small_N: Beta ga 25.9 8.3E+02 0.018 26.0 12.6 39 493-533 2-41 (276)
29 KOG4120 G/T mismatch-specific 20.6 3.4E+02 0.0073 29.3 7.2 121 23-180 208-330 (426)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-199 Score=1640.22 Aligned_cols=831 Identities=50% Similarity=0.835 Sum_probs=757.2
Q ss_pred ChHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhC--CCCceeeecCCCCCchHHHHHHHhhcCC
Q 002938 1 MQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFG--VTPRIGWQIDPFGHSAVQAYLLGSEVGF 78 (864)
Q Consensus 1 ~k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG--~~p~vgW~iD~FGhs~~~p~ll~~~~G~ 78 (864)
+|+.||+||++||||||||||||+|||++||.++|+||+.||+||.++|| .+|++||||||||||+.+|+|| ++|||
T Consensus 109 ~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslf-AqmGf 187 (996)
T KOG1959|consen 109 QKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLF-AQMGF 187 (996)
T ss_pred HHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHH-HHhCc
Confidence 47899999999999999999999999999999999999999999999999 8999999999999999999999 99999
Q ss_pred cEEeEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHH
Q 002938 79 DSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRV 158 (864)
Q Consensus 79 ~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~ 158 (864)
|+++|+||||+||+.|..++.|||+|+|++++++.++|||++|+.+|++| +|||||+.|.+.|++|++.+.++||++|+
T Consensus 188 d~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P-~gfc~dv~c~d~Pi~D~~~~~d~NVkerV 266 (996)
T KOG1959|consen 188 DGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPP-PGFCFDVLCGDDPIIDGPRSYDYNVKERV 266 (996)
T ss_pred cchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCC-CCceeccccCCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CC-cEEEEEcCccchHHHHhhcCCCCCcc
Q 002938 159 NDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNM---DG-RVNALYSTPSIYTDAKYASNESWPLK 234 (864)
Q Consensus 159 ~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~~~~~~~li~~iN~---~~-~~~i~~sT~~~Yf~a~~~~~~~~p~~ 234 (864)
+.|++.++.++..|+|||||+|||+||+|.+|..||+||||||+|+|+ .+ .+++.||||+||++++|+.+..||++
T Consensus 267 d~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp~K 346 (996)
T KOG1959|consen 267 DDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWPVK 346 (996)
T ss_pred HHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCccccc
Confidence 999999999999999999999999999999999999999999999994 34 89999999999999999999999999
Q ss_pred cCCCccccccCCCceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhccCC--CCCchHHHHHHHHHHcccccccCCcchh
Q 002938 235 TDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRSE--TGHNTDSLADALAIAQHHDAVTGTEKQH 312 (864)
Q Consensus 235 ~gdf~~y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~~~~--~~~~~~~lw~~l~~~QhHDaItGTs~~~ 312 (864)
+.|||||++++++||||||||||.+|++.|+++++|++|++|.++|++.. ..+.++.|+++|++.|||||||||+|++
T Consensus 347 t~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTekq~ 426 (996)
T KOG1959|consen 347 TDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEKQH 426 (996)
T ss_pred ccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999999999999999999999999999999999999998754 5678999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEE
Q 002938 313 VANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKRE 392 (864)
Q Consensus 313 V~~dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~ 392 (864)
|.+||+++|..|+..|+.+++.+|+.|.... ..+|++|.+||+|+||.++. .++.+.|+|||||+|.++
T Consensus 427 Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~~t 495 (996)
T KOG1959|consen 427 VADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHTVT 495 (996)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcceee
Confidence 9999999999999999999999999998643 34799999999999999863 357789999999999999
Q ss_pred EEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCC
Q 002938 393 DIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGG 472 (864)
Q Consensus 393 ~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~ 472 (864)
++|+|||+.+++.|+|.+|++|++|++|.......+. .+.....|+|+|.+.|||+|+++|.|+....+.
T Consensus 496 ~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~~~~ 565 (996)
T KOG1959|consen 496 QYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVASTE 565 (996)
T ss_pred eEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecCccc
Confidence 9999999999999999999999999999876443331 123345799999999999999999999765543
Q ss_pred CccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEccC
Q 002938 473 GHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPN 552 (864)
Q Consensus 473 ~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P~ 552 (864)
..+ .+.+..........+.|+|+++++.||.++|.++++..+.+|.+..+.|+|.+|..+.|++ +.+.||||+|+|
T Consensus 566 ~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n--~~q~SgAYiFRp- 641 (996)
T KOG1959|consen 566 RGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDN--DKQASGAYIFRP- 641 (996)
T ss_pred ccc-cccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCc--CCccCcceEecC-
Confidence 210 1111111123334489999999999998889999999988999999999999999887732 358899999999
Q ss_pred CCceeccC-CcccEEEEEcCceEEEEEEEcceEEEEEEEecCCCeEEEEEEEccccccCCCCcEEEEEEEeecCCCCeEE
Q 002938 553 GTFFIKSE-GQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFY 631 (864)
Q Consensus 553 ~~~~~~~~-~~~~i~v~~G~l~~~v~~~~~~~i~~~vrL~~~~~~ie~e~~v~~i~~~~~~~~e~~~~f~t~i~s~~~fy 631 (864)
+..++++. ....++|+.|||+.||++.++.|++|++|+|++.+++||||.|+|||++++.|||++.||.|+|.|++.||
T Consensus 642 ~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fY 721 (996)
T KOG1959|consen 642 GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFY 721 (996)
T ss_pred CCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEE
Confidence 44444443 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccceeecccccCCCCcccCCCccccceeecCceEeEEeCCceeEEEecCCcccccccCceEEEEEEeeccccCCcc
Q 002938 632 TDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRG 711 (864)
Q Consensus 632 tDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~i~D~~~~ltvl~dr~~G~sS~~~G~iElml~Rr~~~dD~rG 711 (864)
|||||+|||||.+++|++|....++||+||||||++.|+|+|++.+|+|||||+|||||++||+||||||||++.||+||
T Consensus 722 TDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~G 801 (996)
T KOG1959|consen 722 TDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRG 801 (996)
T ss_pred ecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCccccCCeEEEEeeehhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCeEEEeEEEEEeecCCCcc-cccccchhhhcCCceeeeeccCCCcccCCcccccccCCCCCCCC
Q 002938 712 VAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA-KWRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLP 790 (864)
Q Consensus 712 vge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~~~lp 790 (864)
|||+|||+.++ ..||+++|+|+++|++...++ ..+|...+++..|.+.+|++..+..+........+.+..+..||
T Consensus 802 v~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP 878 (996)
T KOG1959|consen 802 VGEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLP 878 (996)
T ss_pred cchhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCC
Confidence 99999999886 379999999999999887765 56677889999999999998766544443322222232245899
Q ss_pred CceeEEEeEeeCCCcEEEEEeecccccCCCCCCcceeeeccccCCCCCcceEEEcccccccccchhhhcCC
Q 002938 791 DNVAIITLQELDDGKILLRLAHLYQLGEDNDLSKPTNVELKKLFPRKKIGKVTETSLSANQERTEMEKRDS 861 (864)
Q Consensus 791 ~nvhlltl~~~~~~~~llR~~~l~~~~~~~~~s~~~~v~l~~lf~~~~~~~~~etsLtg~~~~~~~~~~~~ 861 (864)
.+|||+||++|+++.+||||+|+|++|||+++|++++|||.+||..+.|..|+||||+||+++++|++.|+
T Consensus 879 ~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~gN~~ls~mkr~k~ 949 (996)
T KOG1959|consen 879 QSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDGNQPLSDMKRFKF 949 (996)
T ss_pred cceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccCccChhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999965544
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.9e-161 Score=1455.24 Aligned_cols=809 Identities=27% Similarity=0.451 Sum_probs=672.7
Q ss_pred ChHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcE
Q 002938 1 MQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDS 80 (864)
Q Consensus 1 ~k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~ 80 (864)
+|++||+||++||||||||||||+|||++|||||||||++||+|++++||+.|++||+|||||||++||||| ++|||++
T Consensus 104 ~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll-~~~G~~~ 182 (1050)
T PLN02701 104 KKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLL-RRMGFEN 182 (1050)
T ss_pred HHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHH-HhCCCce
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EeEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCC-CCC-----CCCCCcc--ccccC------CCCccccC
Q 002938 81 FFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYE-----PPPGGFY--FEVND------KYPIIQDN 146 (864)
Q Consensus 81 ~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~-~Y~-----~p~~~f~--f~~~~------~~~~~~~~ 146 (864)
++|||++|++|+.+..++.+||+|+++|+..+|++||||+||+ +|+ .||++|| ||..+ ..|||.++
T Consensus 183 ~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~cp~~~~ 262 (1050)
T PLN02701 183 MLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYELCPWGKH 262 (1050)
T ss_pred EEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccccccCcccCC
Confidence 9999999999999999999999999987777799999999995 553 2335666 55542 13666666
Q ss_pred c-ccccCCHHHHHHHHHHHHHHhhhccCCCeEEEeecCCCCc---cchHHHHHHHHHHHHHHhcCC--cEEEEEcCccch
Q 002938 147 I-KLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY---QYARTWFRQLDKFIHYVNMDG--RVNALYSTPSIY 220 (864)
Q Consensus 147 ~-~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y---~~a~~~~~~~~~li~~iN~~~--~~~i~~sT~~~Y 220 (864)
| .++++|+++|++.|++++++++..|++|++|+|+|+||+| .+|..||+||++||+|+|+++ .++++||||++|
T Consensus 263 p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~~ST~~~Y 342 (1050)
T PLN02701 263 PVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVKFGTLEDY 342 (1050)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEEECCHHHH
Confidence 4 6888999999999999999999999999999999999999 577889999999999999764 589999999999
Q ss_pred HHHHhhcC----------------CCCCcccCCCccccccCCCceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhc---
Q 002938 221 TDAKYASN----------------ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG--- 281 (864)
Q Consensus 221 f~a~~~~~----------------~~~p~~~gdf~~y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~--- 281 (864)
|+++++.. ..||++.||||||++++++||||||||||.+|+++|++|++|++||+|+++|.
T Consensus 343 f~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~sla~~~~ 422 (1050)
T PLN02701 343 FSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSFLLGYC 422 (1050)
T ss_pred HHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99998753 47999999999999999999999999999999999999999999999999952
Q ss_pred -----cCCC---CCchHHHHHHHHHHcccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 002938 282 -----RSET---GHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTT 353 (864)
Q Consensus 282 -----~~~~---~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 353 (864)
..++ .+.++.+||+|+++||||||||||+++|++||..||.+++..++.+++.+++.|+..... .+..+..
T Consensus 423 ~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~-~~~~~~~ 501 (1050)
T PLN02701 423 RRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHE-KSDQTPS 501 (1050)
T ss_pred hhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccccc
Confidence 1233 246789999999999999999999999999999999999999999999999999864321 1122234
Q ss_pred cccccc-ccccccCCCccc-ccCCCCeEEEEEEcCCCceEEEEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhh
Q 002938 354 RFQQCP-LLNISYCPASEI-DFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDY 431 (864)
Q Consensus 354 ~~~~~~-~ln~s~~~~~~~-~~~~~~~~~v~v~Npl~~~r~~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~ 431 (864)
.|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|.+|++|++|++|.+....
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~~~----- 576 (1050)
T PLN02701 502 WFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQHDG----- 576 (1050)
T ss_pred cccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEeccccccc-----
Confidence 567774 458899987742 2334556899999999999999999999999999999999999999998864210
Q ss_pred hhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcccccc--------------ceecccCCCCceEEecce
Q 002938 432 YVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSS--------------IQTFESSDKSTVEVGQGN 497 (864)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~~s~--------------~~~~~~~~~~~~~ieN~~ 497 (864)
.......|+|.|.++||||||++|.|............+. ...........++|||++
T Consensus 577 --------~~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~ 648 (1050)
T PLN02701 577 --------EKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTVEISNSH 648 (1050)
T ss_pred --------cccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCCcEEEecCe
Confidence 0012346999999999999999999986532211000000 000001123458999999
Q ss_pred EEEEEeCCCCCeEEEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEccCCCceeccCCcccEEEEEcCceEEEE
Q 002938 498 LKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVH 577 (864)
Q Consensus 498 ~~v~~~~~~G~l~si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P~~~~~~~~~~~~~i~v~~G~l~~~v~ 577 (864)
++|+||+++|.|++|++|++|++..+.++|.+|.+ +.||||+|+|++.+.........+.|++||++++|+
T Consensus 649 lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s---------~~SGAYiFrP~~~~~p~~~~~~~~~v~~Gplv~eV~ 719 (1050)
T PLN02701 649 QTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS---------QGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVH 719 (1050)
T ss_pred EEEEEcCCCCceeEEEecccCceecceeeeeeecC---------CCCcceEEcCCCCCcccCCCCceEEEEeCCEEEEEE
Confidence 99999988999999999999999999999999973 358999999988752222222355689999999999
Q ss_pred EEE-----cceEEEEEEEecC-----CCeEEEEEEEccccccCCCCcEEEEEEEeecCCCCeEEEcCcccceeecccccC
Q 002938 578 QKI-----NEWIYQVTRLYKG-----KEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYR 647 (864)
Q Consensus 578 ~~~-----~~~i~~~vrL~~~-----~~~ie~e~~v~~i~~~~~~~~e~~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~ 647 (864)
+.+ +++++|++|||++ ...||+|++|++||. +..|||++|||.|+|+|+++||||+|||||+||+
T Consensus 720 ~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~---- 794 (1050)
T PLN02701 720 SVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE---- 794 (1050)
T ss_pred EEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec----
Confidence 976 4789999999998 678999999999987 6789999999999999999999999999999997
Q ss_pred CCCcccCCCccccceeecCceEeEEe-CCceeEEEecCCcccccccCceEEEEEEeeccccCCccccccccccccccccc
Q 002938 648 TDWDLEVNEPVAGNYYPINLGIYMQD-VKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDEC 726 (864)
Q Consensus 648 ~~w~~~~~~pv~~nyYP~~s~~~i~D-~~~~ltvl~dr~~G~sS~~~G~iElml~Rr~~~dD~rGvge~l~e~~~~~~~~ 726 (864)
+|+ ++|++||||||+++|+|+| .+.||||+|||++||||+++|+||||||||+++||+|||||+|+|+.
T Consensus 795 -~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dnk------ 864 (1050)
T PLN02701 795 -TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNR------ 864 (1050)
T ss_pred -ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCccccccccccc------
Confidence 343 6999999999999999999 66899999999999999999999999999999999999999999975
Q ss_pred CCeEEEeEEEEEeecCCCcc------------cccccchhhhcCCceeeeeccCCC-cccCCcccccccCCCCCCCCCce
Q 002938 727 KGLTIQGKYYFRIDTIGDGA------------KWRRTFGQEIYSPPLLAFTEEDGD-SWRNSHVTTFSGIDSSYSLPDNV 793 (864)
Q Consensus 727 ~g~~~~~~~~l~l~~~~~~~------------~~~r~~~~~l~~p~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~lp~nv 793 (864)
++..+|+|+||+..... -..+..+..|++|++++++..... ........+|++|.+ +||||+
T Consensus 865 ---~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~--~lpcD~ 939 (1050)
T PLN02701 865 ---PMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK--PLPCDL 939 (1050)
T ss_pred ---cccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCccccccccccccccccccC--CCCCcE
Confidence 35779999999654320 012345678999999888533221 111112367888865 899999
Q ss_pred eEEEeEeeCCC-------------cEEEEEeecccccC----CCCCCc--ceeeeccccCCCCCcceEEEcccccccccc
Q 002938 794 AIITLQELDDG-------------KILLRLAHLYQLGE----DNDLSK--PTNVELKKLFPRKKIGKVTETSLSANQERT 854 (864)
Q Consensus 794 hlltl~~~~~~-------------~~llR~~~l~~~~~----~~~~s~--~~~v~l~~lf~~~~~~~~~etsLtg~~~~~ 854 (864)
||+|||++... .+|+|.+ ++|+- +..++. ...|+|.+||.++.+.++++||||+.++..
T Consensus 940 hlv~lrt~~~~~~~~~~~~~~~~~~~l~r~~--~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~~~~~~ 1017 (1050)
T PLN02701 940 HIVNFKVPRPSKYSQQEAEDPRFGLLLQRRG--WDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDA 1017 (1050)
T ss_pred EEEEeeccCCcccccccCCCccEEEEEEecc--cCcccccCCCccCcccCCcccchhhhhcccceeeeecccccccccch
Confidence 99999976432 2788877 34421 111221 123999999999999999999999999764
Q ss_pred h
Q 002938 855 E 855 (864)
Q Consensus 855 ~ 855 (864)
+
T Consensus 1018 ~ 1018 (1050)
T PLN02701 1018 E 1018 (1050)
T ss_pred h
Confidence 3
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-146 Score=1213.19 Aligned_cols=803 Identities=29% Similarity=0.448 Sum_probs=654.6
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
|+.||+||++||||||+|||||||||.+||.+||+|+.+||+||+.+.|++|++||.|||||||++||+|| +++||+++
T Consensus 228 k~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL-~~ag~~~m 306 (1129)
T KOG1958|consen 228 KNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLL-RRAGFENM 306 (1129)
T ss_pred HHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHH-hhcCchhH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCC-CCCCC---------CCCccccccC---CCCccccCc-
Q 002938 82 FYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPP---------PGGFYFEVND---KYPIIQDNI- 147 (864)
Q Consensus 82 ~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~-~Y~~p---------~~~f~f~~~~---~~~~~~~~~- 147 (864)
+|+|+||..|+.++.++++||+||+.|+..+.++||||+||+ +|+.| ||+|||.+.+ ..|||..+|
T Consensus 307 lIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~Cpw~vpP~ 386 (1129)
T KOG1958|consen 307 LIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCECPWGVPPE 386 (1129)
T ss_pred HHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCCCCCCCCe
Confidence 999999999999999999999999999998899999999998 88765 4799999865 357785555
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhccCCCeEEEeecCCCCccchHHH---HHHHHHHHHHHhcCC--cEEEEEcCccchHH
Q 002938 148 KLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTW---FRQLDKFIHYVNMDG--RVNALYSTPSIYTD 222 (864)
Q Consensus 148 ~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~---~~~~~~li~~iN~~~--~~~i~~sT~~~Yf~ 222 (864)
.|++.||++||+.+++|++++++.|++|.+|+|.||||+|....+| |.|+.+|+++||+.+ ++.++|+|++|||+
T Consensus 387 ~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFGTlsDYF~ 466 (1129)
T KOG1958|consen 387 KITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFGTLSDYFD 466 (1129)
T ss_pred eechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeecCCHHHHHH
Confidence 7999999999999999999999999999999999999999987665 999999999999864 67899999999999
Q ss_pred HHhhc----C---CCCCcccCCCccccccCCCceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhcc---------CCC-
Q 002938 223 AKYAS----N---ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR---------SET- 285 (864)
Q Consensus 223 a~~~~----~---~~~p~~~gdf~~y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~~---------~~~- 285 (864)
||++. + ..||+++||||+|+|+.++||||||||||++|++.|.+|++||+||.|+++|.. ..+
T Consensus 467 al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~~~~~r~~~ 546 (1129)
T KOG1958|consen 467 ALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRVGLAQRIEE 546 (1129)
T ss_pred HHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhcch
Confidence 99865 1 358999999999999999999999999999999999999999999999986421 111
Q ss_pred --CCchHHHHHHHHHHcccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccccccccc--
Q 002938 286 --GHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLL-- 361 (864)
Q Consensus 286 --~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l-- 361 (864)
...+.++||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+..........+...+-+-...
T Consensus 547 ~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~~emd~~r~ 626 (1129)
T KOG1958|consen 547 SNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHSFIEMDDIRD 626 (1129)
T ss_pred hHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCceehhhccc
Confidence 1357789999999999999999999999999999999999999999999999998765322221121111110000
Q ss_pred ccccCCC-cccccCCCCeEEEEEEcCCCceEEEEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCC
Q 002938 362 NISYCPA-SEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRN 440 (864)
Q Consensus 362 n~s~~~~-~~~~~~~~~~~~v~v~Npl~~~r~~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~ 440 (864)
+.+.-|. +-..++ ..+..|++||||++.|.++|+|.|+.+.|.|.+..|++|++||.|+|..+...
T Consensus 627 ~~~~~pek~~~~~~-~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk------------ 693 (1129)
T KOG1958|consen 627 SEDSLPEKTVIGLS-SGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK------------ 693 (1129)
T ss_pred CCCcCcccceeecc-CCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc------------
Confidence 1111111 111222 33468999999999999999999999999999999999999999999622110
Q ss_pred CCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcccccc---ce-----ecc--cCCCCceEEecceEEEEEeCCCCCeE
Q 002938 441 PMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSS---IQ-----TFE--SSDKSTVEVGQGNLKLIFSSDKSKPI 510 (864)
Q Consensus 441 ~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~~s~---~~-----~~~--~~~~~~~~ieN~~~~v~~~~~~G~l~ 510 (864)
......|+|.|.++|||||..+|++..+..+......++ +. ... ....+..+++|++.++.|++++|+|+
T Consensus 694 ~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~fd~~~G~i~ 773 (1129)
T KOG1958|consen 694 TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRFDPETGTIK 773 (1129)
T ss_pred eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEEeccccchhh
Confidence 012347999999999999999999987632211111111 00 000 11123458999999999999999999
Q ss_pred EEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEccCCCc-eeccCCcccEEEEEcCceEEEEEEEcc---eEEE
Q 002938 511 NYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRGPILDEVHQKINE---WIYQ 586 (864)
Q Consensus 511 si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~~~---~i~~ 586 (864)
++..+.+++...+...|..|....+ ++.||||+|.|+|++ ++..-....|.+ +|+|+++|.+..++ ...|
T Consensus 774 ~~~~~~D~~~~~~q~~f~~y~~~~~-----~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~~~~~ 847 (1129)
T KOG1958|consen 774 SINSLSDNKHFESQVSFSNYGERIS-----GDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLHRLSQ 847 (1129)
T ss_pred hhhhcccCCCcccceeecccccccc-----CCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccchHHHhchh
Confidence 9888888888888888888876543 778999999999986 544444556777 99999999987743 2337
Q ss_pred EEEEecCCCeEEEEEEEccccccCCCCcEEEEEEEeecCCCCeEEEcCcccceeecccccCCCCcccCCCccccceeecC
Q 002938 587 VTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPIN 666 (864)
Q Consensus 587 ~vrL~~~~~~ie~e~~v~~i~~~~~~~~e~~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~ 666 (864)
.+++|.|. .+|+++.| ++.+..+.|++|||.|+++++..||||+||+||+||.+. .+.|+++|||||+
T Consensus 848 ~~~~~~G~-~vei~~~v---di~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNyYPmp 915 (1129)
T KOG1958|consen 848 NVRGYSGE-EVEISNSV---DIRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPLQANYYPMP 915 (1129)
T ss_pred heeccCCc-ceeeecee---ecccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCcccceeeccc
Confidence 88999887 68888777 455567999999999999999999999999999999865 4789999999999
Q ss_pred ceEeEEeCCceeEEEecCCcccccccCceEEEEEEeeccccCCcccccccccccccccccCCeEEEeEEEEEeecCCCcc
Q 002938 667 LGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA 746 (864)
Q Consensus 667 s~~~i~D~~~~ltvl~dr~~G~sS~~~G~iElml~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~ 746 (864)
++++|+|.+.+|++++.+++|++|+.+|+||||++||+.+||+||+|+|+.|+- ++...|+|++++.+...
T Consensus 916 t~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DNk---------~t~~~frlv~e~~~s~~ 986 (1129)
T KOG1958|consen 916 TAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDNK---------PTDMKFRLVLESLNSAQ 986 (1129)
T ss_pred ceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCccccccccccc---------hhhheeeeeeccccccc
Confidence 999999999999999999999999999999999999999999999999998874 45778999999776421
Q ss_pred c------------ccccchhhhcCCceeeeeccCCCcccCCcccccccCCCCCCCCCceeEEEeEeeCCC--------cE
Q 002938 747 K------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDG--------KI 806 (864)
Q Consensus 747 ~------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~~~lp~nvhlltl~~~~~~--------~~ 806 (864)
. ..+...+.+++|+..++.+.. ++... ...|.++.. +|||++||+||+++.+. .|
T Consensus 987 ~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~p--k~i~~-~g~~~~~~~--~lpcDl~lvt~rtl~~~~~~~~~~~li 1061 (1129)
T KOG1958|consen 987 DPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEP--KKIED-QGIFEPLNL--SLPCDLHLVTFRTLESSKAAEKRAALI 1061 (1129)
T ss_pred CchhcCCCCChhhhhhcccceecCCchhhcccCC--CChhh-ccccccccC--CCccceeEEEeeeccCcccccccceee
Confidence 1 112345678999988774332 12221 334566654 89999999999999753 37
Q ss_pred EEEEeecccccC-CCCCCcceeeeccccCCCCCcceEEEcccccccccc
Q 002938 807 LLRLAHLYQLGE-DNDLSKPTNVELKKLFPRKKIGKVTETSLSANQERT 854 (864)
Q Consensus 807 llR~~~l~~~~~-~~~~s~~~~v~l~~lf~~~~~~~~~etsLtg~~~~~ 854 (864)
|+|-+ .+|+. +...+...++++.+|+.. +.+++.|+||+.+...
T Consensus 1062 l~R~~--~~c~~~~~g~c~~~ki~~~~ll~~--~~~v~~tsLs~l~~~~ 1106 (1129)
T KOG1958|consen 1062 LHRHA--TDCRSQKKGTCGQLKISVMDLLIK--AKSVKKTSLSLLQEVG 1106 (1129)
T ss_pred eeecc--cccccccccccccccCcHHHHHHH--HHhhchhhHHhhhhcc
Confidence 77754 44432 111122557888888887 8899999999988744
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=5.4e-94 Score=876.34 Aligned_cols=705 Identities=14% Similarity=0.170 Sum_probs=529.1
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
+++||+||++||| ++||||||+||+++||||+||||++||+|+ ++||..|++||+|||||||++||||| ++|||+++
T Consensus 69 ~~~ik~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~ 145 (875)
T PRK09819 69 KERVKKLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRT 145 (875)
T ss_pred HHHHHHHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeE
Confidence 6899999999999 678888999999999999999999999998 79999999999999999999999999 99999999
Q ss_pred eEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHH
Q 002938 82 FYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDF 161 (864)
Q Consensus 82 ~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~ 161 (864)
++||+..+. + .....+|+|+|+| ||+||||++|.+|+.+ ..+ + ....+++++++.+
T Consensus 146 ~~wr~~~~~---~-~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g-~~~-----~----------~~~~~~~~~~~~~ 201 (875)
T PRK09819 146 LFWRGVSDR---H-GTDKTEFLWQSDD----GSEVLAQQLPLGYAIG-KYL-----P----------EDEEELKKRLDEY 201 (875)
T ss_pred EEEeccccc---c-cCCCceEEEECCC----CCeEEEEECccccccC-CCC-----C----------cCHHHHHHHHHHH
Confidence 999975321 1 1235689999999 9999999999999865 111 0 1234677777777
Q ss_pred HHHHHHhhhccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CcEEEEEcCccchHHHHhhcCCCCCcccCCCcc
Q 002938 162 VAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYSTPSIYTDAKYASNESWPLKTDDFFP 240 (864)
Q Consensus 162 ~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~~~~~~~li~~iN~~-~~~~i~~sT~~~Yf~a~~~~~~~~p~~~gdf~~ 240 (864)
++.++++ ..++++|+|+|+|+.+.. ++|.++|+.+|.. +.+++++||+++||++++++...||++.|||+.
T Consensus 202 ~~~~~~~---~~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~ 273 (875)
T PRK09819 202 FGVLEKK---SSTKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFID 273 (875)
T ss_pred HHHHhhc---CCCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCC
Confidence 7766554 578999999999975433 3566677777764 568999999999999998877889999999974
Q ss_pred --ccccCCCceeeeeechhhHHHHHHHHhHHHH-HHHHHHHhhc---cCCCCCchHHHHHHHHHHcccccccCCcchhhh
Q 002938 241 --YADRAHAYWTGYFSSRPALKRYVKVMSGYYL-AARQLEFYIG---RSETGHNTDSLADALAIAQHHDAVTGTEKQHVA 314 (864)
Q Consensus 241 --y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~-~aE~l~~l~~---~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~ 314 (864)
|...+ +||||||+.+|++||++|++|+ .+|+|+++|. ..|+...++++||.|+++||||+||||++++|+
T Consensus 274 ~~y~~~H----rG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~ 349 (875)
T PRK09819 274 GKYMRVH----RSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVH 349 (875)
T ss_pred Ccccccc----CCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHH
Confidence 43222 3999999999999999999998 4999999864 457778899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEEEE
Q 002938 315 NDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDI 394 (864)
Q Consensus 315 ~dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~~~ 394 (864)
+|+..|+.++.+.++.+++.+++.|+.+.. .++...++||||++|+|+++
T Consensus 350 ~d~~~r~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~ 399 (875)
T PRK09819 350 RDIVARYKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEV 399 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeE
Confidence 999999999999999999999999975431 12345799999999999999
Q ss_pred EEEEee--CCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCCCCCCCcEEEEEEe-ecCCCceEEEEEEecCCC
Q 002938 395 IRIPVA--NGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPV-SVPPLGFSTYTISSVKRG 471 (864)
Q Consensus 395 v~i~v~--~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vPplG~~~y~i~~~~~~ 471 (864)
|++++. ...+.|.|.+|++|++|++........+...... ..+. ......+.+.|.+ .||||||++|.+...+..
T Consensus 400 v~i~~~~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~ 477 (875)
T PRK09819 400 INTTVYLPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIV-HYGN-YDPFMEFDIQINVQILPAMGYRTLYIELNEEG 477 (875)
T ss_pred EEEEEEeccCCEEEECCCCCEeeEEEeeccccccchhhccee-ccCC-CCceEEEEEEEEECCCCCcccEEEEEEeCCcc
Confidence 998764 5688999999999999998543221111000000 0000 0001246788874 899999999998764332
Q ss_pred CCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEcc
Q 002938 472 GGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551 (864)
Q Consensus 472 ~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P 551 (864)
.... ........|||++|+|+|+ ++|.| +|+||.+|+++. ++..|.+. ++.+|||+|.|
T Consensus 478 ~~~~---------~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~d~-------~d~gD~yd~~p 536 (875)
T PRK09819 478 NVIE---------PKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIEEN-------GDDGDEYDYSP 536 (875)
T ss_pred cccc---------ccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEEec-------CcCCCCcccCC
Confidence 1100 1233467899999999999 68999 699999999873 34566543 77899999998
Q ss_pred CCCc-eeccC-CcccEEEEEcCceEEEEEEEc------------------ceEEEEEEEecCCCeEEEEEEEccccccCC
Q 002938 552 NGTF-FIKSE-GQVPLTVMRGPILDEVHQKIN------------------EWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611 (864)
Q Consensus 552 ~~~~-~~~~~-~~~~i~v~~G~l~~~v~~~~~------------------~~i~~~vrL~~~~~~ie~e~~v~~i~~~~~ 611 (864)
...+ .+... ....+.+++|++++++++++. +.++|+++|++++++|+|++.|++. .
T Consensus 537 ~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~ 612 (875)
T PRK09819 537 PREDWVITSAEAVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----A 612 (875)
T ss_pred CCCCCEEeccCCcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----c
Confidence 6544 33222 234678888999888877652 4688999999999999999999653 6
Q ss_pred CCcEEEEEEEeecCCCCeEEEcCcccceeeccccc--CCCCcccCCCccccceeecCceEeEEeCCceeEEEecCCcccc
Q 002938 612 LGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDY--RTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGS 689 (864)
Q Consensus 612 ~~~e~~~~f~t~i~s~~~fytDsnG~~~ikR~~~~--~~~w~~~~~~pv~~nyYP~~s~~~i~D~~~~ltvl~dr~~G~s 689 (864)
.+|.+++.|+++|.++.++| | .+|++|+|+++. .++|+.+..+..+.+.||+.+||+|+|.+.|++|+||++||+.
T Consensus 613 ~~~~Lrv~fp~~i~~~~~~~-d-~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v~ls~~~~Gvall~dg~~ey~ 690 (875)
T PRK09819 613 DDHRLRVLFPTEIASKFSLA-D-QQFGSITRPVNDPAMDVWEQEGWQEAPISIEPMQSFVALHDERHGVAVFTEGVREYE 690 (875)
T ss_pred cceEEEEEccCCCCCCceEc-C-CCceEEECCCcCccccccccccceeCCCCChhhhceEEEecCCceEEEECCCcceEE
Confidence 78999999999999987755 4 678899999865 4689877554444568999999999999999999999999985
Q ss_pred cccC--ceEEEEEEeeccc---c-----CCcccccccccccccccccCCeEEEeEEEEEeecCCCccc--ccccchhhhc
Q 002938 690 SIVD--GEVELMLHRRLLL---D-----DSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK--WRRTFGQEIY 757 (864)
Q Consensus 690 S~~~--G~iElml~Rr~~~---d-----D~rGvge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~~--~~r~~~~~l~ 757 (864)
-..+ +.|.|+|.|+..+ + -+|.-|..+-+.+ .+|.| .+.|.+.|.++..... ...+.+.+++
T Consensus 691 v~g~~~~~i~LTLlRs~g~lgk~~l~~rpgr~sG~~~ptP~---aq~~G---~h~f~y~l~ph~g~~~~~~~~~~a~~~n 764 (875)
T PRK09819 691 IIGENYDTIALTLFRGVGLLGKEDLLYRPGRPSGIKIPTPD---SQLLG---ELSFRFSLTSYEGTFDEAGVAQQAKEYL 764 (875)
T ss_pred EecCCCCeEEEEeecccCccCCCccccCCCcccCCccCCCh---HHhcC---ceEEEEEEEEccCCcchHHHHHHHHHhc
Confidence 3332 4899999999853 1 1222221111111 12344 2345555555443211 1234678899
Q ss_pred CCceeeeeccC----CCcccCCcccccccCCCCCCCCCceeEEEeEeeCCC-cEEEEEeec
Q 002938 758 SPPLLAFTEED----GDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDG-KILLRLAHL 813 (864)
Q Consensus 758 ~p~~~~~~~~~----~~~~~~~~~~~~s~l~~~~~lp~nvhlltl~~~~~~-~~llR~~~l 813 (864)
.|+.++-.... ...........++.+. ..+.+|.+-++|+..++ .++||+.|.
T Consensus 765 ~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRlyn~ 822 (875)
T PRK09819 765 TPVQCYNKIPFLNMRLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRFFNP 822 (875)
T ss_pred cCcceeecccccccccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEEeCC
Confidence 99876531110 0000001112233221 23458999999998765 499997654
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-76 Score=632.99 Aligned_cols=629 Identities=18% Similarity=0.228 Sum_probs=497.3
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEEe
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFF 82 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~~ 82 (864)
+++++.+..||+-.|||.||++|.++|+|||||||++.|++|+.++||+++++.|+||+||+|+|||||. +.+||+.|+
T Consensus 345 ~kl~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFL 423 (1078)
T KOG4342|consen 345 SKLQEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFL 423 (1078)
T ss_pred HHHHHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCC-CCCCCCCCccccccCCCCccccCcccccCCHHHHHHHH
Q 002938 83 YGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDF 161 (864)
Q Consensus 83 ~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~-~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~ 161 (864)
+++++|+..|.+|... |.|.|.| ||+|++||.|. .|... -+ +.+.
T Consensus 424 TQKLSWNniNSFPhsT---FnW~glD----GSqvl~HmPPgntYtad-----------------------~~----v~dV 469 (1078)
T KOG4342|consen 424 TQKLSWNNINSFPHST---FNWEGLD----GSQVLVHMPPGNTYTAD-----------------------GS----VEDV 469 (1078)
T ss_pred HhhccccccCcCCccc---eeeeecc----CceEEEecCCCCccccc-----------------------Cc----HHHH
Confidence 9999999999999887 9999999 99999999886 57654 12 2455
Q ss_pred HHHHHHhhhccCCCeEEEeecCCCCccch--HHHHHHHHHHHH---HHhcCC-cEEEEEc-CccchHHHHhhc---CCCC
Q 002938 162 VAAAISQANITRTNHIMWTMGTDFKYQYA--RTWFRQLDKFIH---YVNMDG-RVNALYS-TPSIYTDAKYAS---NESW 231 (864)
Q Consensus 162 ~~~~~~~~~~~~t~~il~~~G~Df~y~~a--~~~~~~~~~li~---~iN~~~-~~~i~~s-T~~~Yf~a~~~~---~~~~ 231 (864)
+..+.+..+..+.++-|+.+| ++++ ++.-+.++||.+ .-|.++ -|+++.+ |+.+||+++.+. +..+
T Consensus 470 L~tv~qnk~~~~~~~gl~lfG----~GDGGGGPT~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~L 545 (1078)
T KOG4342|consen 470 LKTVAQNKDKGRANHGLFLFG----FGDGGGGPTQEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDL 545 (1078)
T ss_pred HHHHHhcCCccccCcceEEEE----ecCCCCCCcHHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcc
Confidence 666666666777888888888 5554 345566776654 334555 7899999 999999999775 3569
Q ss_pred CcccC-CCccccccCCCceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHHcccccc
Q 002938 232 PLKTD-DFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR-----SETGHNTDSLADALAIAQHHDAV 305 (864)
Q Consensus 232 p~~~g-df~~y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~~-----~~~~~~~~~lw~~l~~~QhHDaI 305 (864)
|+|.| .||++|+ |+|||++.+|+++|++|..|+.+|.+.++|.. .||...++.||+.++++||||.+
T Consensus 546 ptW~GELyfEfHr-------GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVl 618 (1078)
T KOG4342|consen 546 PTWVGELYFEFHR-------GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVL 618 (1078)
T ss_pred cccchheEEEEec-------CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccC
Confidence 99966 5789999 99999999999999999999999999998753 35777899999999999999999
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEc
Q 002938 306 TGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYN 385 (864)
Q Consensus 306 tGTs~~~V~~dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~N 385 (864)
||+|++.|++|.+-.+.+....++.++..+++.|.... .+...+++.|
T Consensus 619 pGSCIeMVykeA~p~~~~v~k~~~tLl~~a~~~L~as~--------------------------------s~ke~L~~~n 666 (1078)
T KOG4342|consen 619 PGSCIEMVYKEAMPHYEDVRKHGNTLLSAAAAALCASE--------------------------------SGKEGLLIVN 666 (1078)
T ss_pred CcHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC--------------------------------CCccceEEEe
Confidence 99999999999999999999999999999999885322 1234689999
Q ss_pred CCCceEEEEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEE
Q 002938 386 SLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTI 465 (864)
Q Consensus 386 pl~~~r~~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i 465 (864)
+|+|.|.+++.++-+..... . -..++|.+|++...-
T Consensus 667 TLpW~~~~v~~~~kp~k~~~----------~----------------------------------e~c~~~g~~ta~vt~ 702 (1078)
T KOG4342|consen 667 TLPWKRIEVMALPKPGKAHS----------L----------------------------------ELCTVPGMGTAPVTP 702 (1078)
T ss_pred ccccceeeeecccCCCCcee----------E----------------------------------EEeccCCccccCCCC
Confidence 99999999987765432111 0 124566666543210
Q ss_pred EecCCCCCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCceEEE---------EEEeEEEecccCCC
Q 002938 466 SSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES---------VEQSYSFYPAYNGT 536 (864)
Q Consensus 466 ~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~~k~~g~~~~---------~~~~~~~Y~~~~g~ 536 (864)
. . +++.. -...+.++|.|+.+||+++ .+|.|+||+|..+|++.. -.++|..|.+.
T Consensus 703 -----~-~----~p~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD~--- 766 (1078)
T KOG4342|consen 703 -----P-T----SPVFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDDV--- 766 (1078)
T ss_pred -----C-C----CceeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecCC---
Confidence 0 0 01111 1245778999999999999 589999999998888865 12678888754
Q ss_pred CCCCCCCCcceE---EccCCCceecc-CCcccEEE-EEcCceEEEEEEE----cceEEEEEEEecCC-----CeEEEEEE
Q 002938 537 NDKAPQNAGAYI---FRPNGTFFIKS-EGQVPLTV-MRGPILDEVHQKI----NEWIYQVTRLYKGK-----EHVEVEFI 602 (864)
Q Consensus 537 ~~~~~~~sgaY~---F~P~~~~~~~~-~~~~~i~v-~~G~l~~~v~~~~----~~~i~~~vrL~~~~-----~~ie~e~~ 602 (864)
+-.|.||+ |+-. .+++ .....+.| .+|+++..+.+.+ .+.++++|.|..+. +.|+|.+.
T Consensus 767 ----PL~WqAWDte~ysle---~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~te 839 (1078)
T KOG4342|consen 767 ----PLYWQAWDTEDYSLE---RYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTE 839 (1078)
T ss_pred ----ccchhhhhhhhhcee---cceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEE
Confidence 77788884 4433 2222 34446777 8999998887765 46899999997765 78999999
Q ss_pred EccccccCCCCcEEEEEEEeecCCCCeEEEcCcccceeecccccCCCCcccCCCccccceeecCceEeEEeCCceeEEEe
Q 002938 603 VGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLV 682 (864)
Q Consensus 603 v~~i~~~~~~~~e~~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~i~D~~~~ltvl~ 682 (864)
|+ |+ +.+|-+.|.|+.+|.|..+.|.. .|++.||+++|+++|+.+++|.+.+.+ ++.+|...|++|||
T Consensus 840 V~---Wh-e~~KFLKVEFPv~irs~fAsYEt--QFGitkRPTHYNTSWDvAkFEVchhkf------aDySe~~~Gvs~LN 907 (1078)
T KOG4342|consen 840 VH---WH-EAHKFLKVEFPVRIRSSFASYET--QFGITKRPTHYNTSWDVAKFEVCHHKF------ADYSEHGFGVSLLN 907 (1078)
T ss_pred Ee---eh-hcCceEEeeccccccccchhhhh--hcccccCCccccccchhhHhHHHHhhh------hhhhhcccceeeec
Confidence 95 65 67999999999999998888876 466999999999999999999887666 99999999999999
Q ss_pred cCCcccccccCceEEEEEEeeccccCCcccccccccccccccccCCeEEEeEEEEEeecCCCccccc-ccchhhhcCCce
Q 002938 683 DRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWR-RTFGQEIYSPPL 761 (864)
Q Consensus 683 dr~~G~sS~~~G~iElml~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~~~~-r~~~~~l~~p~~ 761 (864)
||+||. |..++-|.|.|+|++..+|.-. |.+ ++.+++.+.+++...... =+.+.++++|.-
T Consensus 908 DCKYGf-SthGnlmrLSLLRsPKaPDAhA------DmG-----------~Hei~YA~yPH~g~lds~tv~aAh~fN~~fk 969 (1078)
T KOG4342|consen 908 DCKYGF-STHGNLMRLSLLRSPKAPDAHA------DMG-----------RHEITYALYPHKGSLDSGTVQAAHSFNFPFK 969 (1078)
T ss_pred cccccc-ccccceeeehhhcCCCCCCccc------ccC-----------cceEEEEeccCCCCCchhHHHHHHhcCCcee
Confidence 999997 6999999999999999999743 332 446677777776543211 136778888875
Q ss_pred eeeeccCCCcccCCcccccccCCCCCCCCCceeEEEeEeeCC----CcEEEEEeecccc
Q 002938 762 LAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDD----GKILLRLAHLYQL 816 (864)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~s~l~~~~~lp~nvhlltl~~~~~----~~~llR~~~l~~~ 816 (864)
+.....+. -....|..+. .+=.+||.|-++|..++ ..++|| .||.
T Consensus 970 l~lpa~~~-----an~d~~dafs--vsgdpnViLs~iK~aE~~~~~~SivlR---vYEs 1018 (1078)
T KOG4342|consen 970 LALPAPSP-----ANADSWDAFS--VSGDPNVILSTIKQAESSPQRRSIVLR---VYES 1018 (1078)
T ss_pred eccCCCCC-----CCCcccccee--ecCCchHHHHHhhhhccCcccceEEEE---ehhh
Confidence 44433221 0122333332 13457888888888764 369999 6665
No 6
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-46 Score=449.27 Aligned_cols=598 Identities=18% Similarity=0.193 Sum_probs=423.4
Q ss_pred HHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEEeEecc
Q 002938 7 QLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRI 86 (864)
Q Consensus 7 ~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~~~~R~ 86 (864)
++|+.|+|+++||+||.+|.++++||+++||+++|+||+.++||...++.|.||+||.|+++|||+ ..+|+++|+++++
T Consensus 264 ~~v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~kl 342 (943)
T COG0383 264 PAVEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKL 342 (943)
T ss_pred ccccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred chHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHHH
Q 002938 87 DYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAI 166 (864)
Q Consensus 87 ~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~ 166 (864)
.|++.+.++++. |.|++.| |+++++|..+.+++.. . . ....+++
T Consensus 343 awn~tn~~Ph~~---~~w~~~d----g~e~~~hds~~~~~~d-------~---------------v-------~~~~~~r 386 (943)
T COG0383 343 AWNDTNRFPHDL---LRWRWKD----GTENLAHDSICGCSSD-------P---------------V-------HREMEYR 386 (943)
T ss_pred chhhccCCChhH---heeeccc----ccccceeecCCCCccc-------H---------------H-------HHHHHhh
Confidence 999999999975 9999999 9999999876554221 0 0 0111112
Q ss_pred HhhhccCCCeEEEeecCCCCccchH--HHHHHHHHHHHHHhcCCcEEEEEcCccchHHHH----hhcCCCCCcc-cCCCc
Q 002938 167 SQANITRTNHIMWTMGTDFKYQYAR--TWFRQLDKFIHYVNMDGRVNALYSTPSIYTDAK----YASNESWPLK-TDDFF 239 (864)
Q Consensus 167 ~~~~~~~t~~il~~~G~Df~y~~a~--~~~~~~~~li~~iN~~~~~~i~~sT~~~Yf~a~----~~~~~~~p~~-~gdf~ 239 (864)
.. -.....|+.+| +++++ +..+.+++.. ...+..+|... .......|++ ..+|+
T Consensus 387 ~~---~~~~~~~~~~g----~gd~ggg~~~dm~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~ 447 (943)
T COG0383 387 FE---KINQVGLYLYG----YGDGGGGPSIDMLENPE------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYL 447 (943)
T ss_pred hh---hhccceeEEee----ccCCCCCCCHHHHhccc------------cccccceeeecceeeeeecccccccchhhhh
Confidence 11 13345677777 44432 1222222110 12222333222 1223457888 55788
Q ss_pred cccccCCCceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhc------cCCCCCchHHHHHHHHHHcccccccCCcchhh
Q 002938 240 PYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG------RSETGHNTDSLADALAIAQHHDAVTGTEKQHV 313 (864)
Q Consensus 240 ~y~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~------~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V 313 (864)
++|+ |+|||....|+++|.+|..|+.+|.+.+++. ..++...++++|+.++++|+||+++||++..|
T Consensus 448 E~hr-------g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~v 520 (943)
T COG0383 448 ELHR-------GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEV 520 (943)
T ss_pred hccC-------ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeee
Confidence 9999 9999999999999999999999999888742 24667789999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEE
Q 002938 314 AN-DYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKRE 392 (864)
Q Consensus 314 ~~-dy~~rl~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~ 392 (864)
+. +....+......+..++..+++.|.+. ....+.++|++.|++.
T Consensus 521 y~~~a~~~~~~~~~~~~~i~~~~~~~l~~~----------------------------------~~e~~~~~~~~~~~~~ 566 (943)
T COG0383 521 YSYDALPLLEVVQKGASKIAELALKVLSSQ----------------------------------CLENLFVKNTLSWNGI 566 (943)
T ss_pred chhhHHHHHHhhhccchhhhhhhhhhhhhc----------------------------------cccceEEEeeccCCcc
Confidence 99 999888888888888888888877331 1235789999999981
Q ss_pred EEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCC
Q 002938 393 DIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGG 472 (864)
Q Consensus 393 ~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~ 472 (864)
.++|+|..++.+..+.+. ...++|++|...+.+++.....
T Consensus 567 ----------~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~ 606 (943)
T COG0383 567 ----------SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP 606 (943)
T ss_pred ----------eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc
Confidence 455667555444433221 1246888898888873322110
Q ss_pred CccccccceecccCCCCceEEecceEEEEEeCCCC-CeEEEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEcc
Q 002938 473 GHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKS-KPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRP 551 (864)
Q Consensus 473 ~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G-~l~si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P 551 (864)
..+..++...+..++ ++| .+ ..|.+. +..++||.-.+
T Consensus 607 ----------------~~~~~~~~~~~~~~~-~~gn~~------------------~~~~~~-------~~~~~~w~i~~ 644 (943)
T COG0383 607 ----------------ETVIEEKEWKRLIIN-DTGNQL------------------ALIEDE-------PAYWDAWNIDK 644 (943)
T ss_pred ----------------cccccccchheeecc-CCCcce------------------eeeecc-------cceechhcchh
Confidence 122334444455554 566 22 222221 34455665554
Q ss_pred CCCc-eeccCCcccEEEEEcCceEEEEEEE---cceEEEEEEEecCCCeEEEEEEEccccccCCCCcEEEEEEEeecCCC
Q 002938 552 NGTF-FIKSEGQVPLTVMRGPILDEVHQKI---NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETN 627 (864)
Q Consensus 552 ~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~---~~~i~~~vrL~~~~~~ie~e~~v~~i~~~~~~~~e~~~~f~t~i~s~ 627 (864)
.... ...+.....-.+++|||+.++++.. .+.++|.|++++++++|+|++.|++. ..+|.++|.|++++.++
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~ 720 (943)
T COG0383 645 FLEEELLALTALPEEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASD 720 (943)
T ss_pred hhhhhhhhhhccccchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEeccccccc
Confidence 3322 2222222322358999999998765 46789999999999999999999753 67899999999999997
Q ss_pred CeEEEcCcccceeecccccCCCCcccCCCccccceeecCceEeEEeCCce--eEEEecCCcccccccCceEEEEEEeec-
Q 002938 628 KTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKE--FSLLVDRALGGSSIVDGEVELMLHRRL- 704 (864)
Q Consensus 628 ~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~i~D~~~~--ltvl~dr~~G~sS~~~G~iElml~Rr~- 704 (864)
.+.| | -.|+.++|+++.+++|+.+..+ -|+..++++.|...| +++++|++||++ .+++.|.|+|.|..
T Consensus 721 ~a~~-d-~~fg~v~Rp~~~~~~W~~a~~e------~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~ 791 (943)
T COG0383 721 FATA-D-IPFGVVERPTHPNTSWENARFE------VPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVG 791 (943)
T ss_pred ceec-c-ccceeeccCCCCchhhhcccCc------chhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEeccccc
Confidence 6544 3 6788999999999999876544 467888999999998 899999999995 69999999999999
Q ss_pred ------cccCCcccccccccccccccccCCeEEEeEEEEEeecCCCccc--ccccchhhhcCCceeeeeccCCCcccCCc
Q 002938 705 ------LLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK--WRRTFGQEIYSPPLLAFTEEDGDSWRNSH 776 (864)
Q Consensus 705 ------~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~~--~~r~~~~~l~~p~~~~~~~~~~~~~~~~~ 776 (864)
.++|.-+ + |-| .++|.+.+.++..... .....++.++.|........+.. ....
T Consensus 792 ~~gd~~~~P~p~A--------d-----~~g---~h~~~y~ly~h~~~~~~~~~~~~a~~~~~P~~~~~~~~~~~--~~~~ 853 (943)
T COG0383 792 ELGDWGYRPDPEA--------D-----CLG---EHEFTYALYPHQGSFLSAPTAVRAYELNVPVRTVQVEEDGV--EGTL 853 (943)
T ss_pred ccccccccCCchh--------h-----hcc---ceeEEEEEEEccccccccchhhhhhhccCceEEeecccccc--cccc
Confidence 7776632 1 122 2244445554443211 01123445566665555332110 0011
Q ss_pred ccccc---cCCCCCCCCCceeEEEeEeeCCC-cEEEEEeecccc
Q 002938 777 VTTFS---GIDSSYSLPDNVAIITLQELDDG-KILLRLAHLYQL 816 (864)
Q Consensus 777 ~~~~s---~l~~~~~lp~nvhlltl~~~~~~-~~llR~~~l~~~ 816 (864)
...++ ++. ..-|+++.|-++|+..|+ .++||+++....
T Consensus 854 ~~~~~~~~~~~--~~~~~~~~lsA~K~aed~~~~IlR~yn~~~~ 895 (943)
T COG0383 854 EATLDLLEPLL--LVGPDNLILSALKRAEDGDGLILRLYNPSGT 895 (943)
T ss_pred hhccccccccc--cCCCcceEEEeeeecccCCceEEEEeccCCC
Confidence 11122 111 145889999999999876 799998876544
No 7
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.8e-44 Score=387.30 Aligned_cols=208 Identities=30% Similarity=0.496 Sum_probs=165.0
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
++++|+||++||||||||||||+||+++++||+||||++|++|++++||+.|++||+||+||||+++|||| +++||+++
T Consensus 63 ~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~ 141 (275)
T PF01074_consen 63 FKRIKKLVKEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYF 141 (275)
T ss_dssp HHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEE
T ss_pred HHHHHHHHHhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHH
Q 002938 82 FYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDF 161 (864)
Q Consensus 82 ~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~ 161 (864)
+++|++++.++.++....++|+|+|+| |++||||+++.+|..+..+..| ++++.+
T Consensus 142 v~~r~~~~~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~~~---------------------~~~~~~ 196 (275)
T PF01074_consen 142 VIWRISWNDKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGSEF---------------------EDADEL 196 (275)
T ss_dssp EESSS-HHHHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTCCH---------------------HHHHHH
T ss_pred EEeccccccccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCccc---------------------ccHHHH
Confidence 999999999998877788899999999 9999999999987653011101 346788
Q ss_pred HHHHHHhhhccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHh---c-CCcEEEEEcCccchHHHHhhcCCCCCcc-cC
Q 002938 162 VAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVN---M-DGRVNALYSTPSIYTDAKYASNESWPLK-TD 236 (864)
Q Consensus 162 ~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~~~~~~~li~~iN---~-~~~~~i~~sT~~~Yf~a~~~~~~~~p~~-~g 236 (864)
++++++.+..+.++++|+|+|+| ...+..+++++++|| + ...+++++||+++||++++++ .+||++ +|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~G~d------~~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~ 269 (275)
T PF01074_consen 197 LEQLRKLAKKYYTNNILIPYGDD------DDGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHG 269 (275)
T ss_dssp HHHHHHHHCCSSSSEEEEEEEEE------HHHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES
T ss_pred HHHHHHHHHhcCCCceEEEeecC------CCCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCC
Confidence 99999999999999999999988 122445555666665 3 468999999999999999998 999999 99
Q ss_pred CCcccc
Q 002938 237 DFFPYA 242 (864)
Q Consensus 237 df~~y~ 242 (864)
||+||+
T Consensus 270 df~~Y~ 275 (275)
T PF01074_consen 270 DFPPYA 275 (275)
T ss_dssp -B-S-E
T ss_pred CCCCCC
Confidence 999995
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=3.4e-42 Score=398.16 Aligned_cols=411 Identities=27% Similarity=0.420 Sum_probs=277.8
Q ss_pred EEEEEEcCCCceEEEEEEEEeeCCcEEEEccCCcEEeEEEcCCccccccchhhhhhhccCCCCCCCCcEEEEEEeecCCC
Q 002938 379 LVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPL 458 (864)
Q Consensus 379 ~~v~v~Npl~~~r~~~v~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPpl 458 (864)
++|+|||||+|+|+++|+|++..+.+.+.|..|++|++|+++... ....++|.|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998211 1235789999999999
Q ss_pred ceEEEEEEecCCCCCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCceEEE--EEEeEEEecccCCC
Q 002938 459 GFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES--VEQSYSFYPAYNGT 536 (864)
Q Consensus 459 G~~~y~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~~k~~g~~~~--~~~~~~~Y~~~~g~ 536 (864)
||++|.|...+........ .. ....+...|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|.+..++
T Consensus 62 Gy~~~~i~~~~~~~~~~~~-~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEA-SI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeeccccccccccc-ee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 9999999987664322100 00 01113478999999999996669999999999999999 88899999765431
Q ss_pred CC---CCCCCCcceEEccCCCceeccCCcccEEEEEcC--ceEEEEEEEcceEEEEEEEecCCCeEEEEEEEccccccCC
Q 002938 537 ND---KAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGP--ILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 611 (864)
Q Consensus 537 ~~---~~~~~sgaY~F~P~~~~~~~~~~~~~i~v~~G~--l~~~v~~~~~~~i~~~vrL~~~~~~ie~e~~v~~i~~~~~ 611 (864)
.. ...+.+|+|.|.|++.....+.-...+. ..+. ++.++.....+.++++++||+++++|||++.|+|.+ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~---~ 212 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWA---E 212 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-T---T
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEecccc---c
Confidence 00 0123578888887765311000000010 0111 233333344568999999999999999999998642 2
Q ss_pred CCc-EEEEEEEeecCCCCeEEEcCcccceeecccccCCCCcccCCCccccceeecCceEeEEeCCceeEEEecCCccccc
Q 002938 612 LGK-EVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 690 (864)
Q Consensus 612 ~~~-e~~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~i~D~~~~ltvl~dr~~G~sS 690 (864)
.++ +++++|+|+|.++..||+|++|+.+.+|+++. +.|+++|||||.+.++|.|.+.+|+|+||+++|+++
T Consensus 213 ~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~~--------~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~ 284 (457)
T PF07748_consen 213 DHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTHP--------NTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYES 284 (457)
T ss_dssp SCEEEEEEEEEES-S-TCEEEEESTTEEEEECESST--------TTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEE
T ss_pred CCceeEEEEeecCCCCCCEEEECCCCeEEecCCccc--------cCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEe
Confidence 233 79999999999999999999885444435543 356789999999999999999889999999999988
Q ss_pred cc-CceEEEEEEeeccccCCcccccccccccccccccCCeEEEeEEEEEeecCCCcccccccchhhhcCCceeeeeccCC
Q 002938 691 IV-DGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLAFTEEDG 769 (864)
Q Consensus 691 ~~-~G~iElml~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~l~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~ 769 (864)
+. +|+|+|||||++.+||++|++ .|.|.+...........+.+.++++|++++....
T Consensus 285 ~~~~g~l~ltL~R~~~~D~g~~~~--------------------~~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~-- 342 (457)
T PF07748_consen 285 LDQDGELELTLLRRPSQDDGRGVF--------------------RYALYPHSGSWDEADVVQEAYELNQPLIVFNSSN-- 342 (457)
T ss_dssp CTTTTEEEEEEEEEBSCG-SSSEE--------------------CCEEEEEEEEEEEEECHHCHHHHTS-EEEESS----
T ss_pred ccCCCeEEEEEeecccccCCccEE--------------------EEEEEEeccccccccchhhhhhccCccEEeeccc--
Confidence 77 999999999999999999866 2344443321111111235678999998772211
Q ss_pred CcccCCcccccccCCC-CCCCCCceeEEEe-----EeeCCC-----cEEEEEeecccccCCCC---CCcc---eeeeccc
Q 002938 770 DSWRNSHVTTFSGIDS-SYSLPDNVAIITL-----QELDDG-----KILLRLAHLYQLGEDND---LSKP---TNVELKK 832 (864)
Q Consensus 770 ~~~~~~~~~~~s~l~~-~~~lp~nvhlltl-----~~~~~~-----~~llR~~~l~~~~~~~~---~s~~---~~v~l~~ 832 (864)
. .......++++.. ...+|+++|+.+| |+..++ .++||+.|......... ++.+ +++++.+
T Consensus 343 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (457)
T PF07748_consen 343 -I-QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLVN 420 (457)
T ss_dssp -T-TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEES
T ss_pred -c-ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEecc
Confidence 1 1111223333321 1236787877776 666655 69999887655543322 2345 7888899
Q ss_pred cCCCCCcceEEEccccc
Q 002938 833 LFPRKKIGKVTETSLSA 849 (864)
Q Consensus 833 lf~~~~~~~~~etsLtg 849 (864)
+|....+..++||++++
T Consensus 421 lle~~~~~~i~e~s~~~ 437 (457)
T PF07748_consen 421 LLEEPDIEEIEETSLSD 437 (457)
T ss_dssp TTSSSCEEEEEEE-SEE
T ss_pred cccCCCccceEeeccCC
Confidence 99998889999999754
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.87 E-value=3.8e-23 Score=176.95 Aligned_cols=75 Identities=35% Similarity=0.549 Sum_probs=65.5
Q ss_pred CceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhccC-----CCCCchHHHHHHHHHHcccccccCCcchhhhhHHHHHH
Q 002938 247 AYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRS-----ETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 321 (864)
Q Consensus 247 ~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~~~-----~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 321 (864)
.||+|||||||.+|+++|++|++|+.||+|++++... ++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 4899999999999999999999999999999986532 45568899999999999999999999999999999886
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.84 E-value=1.7e-21 Score=166.22 Aligned_cols=74 Identities=35% Similarity=0.506 Sum_probs=68.1
Q ss_pred ceeeeeechhhHHHHHHHHhHHHHHHHHHHHhhc-----cCCCCCchHHHHHHHHHHcccccccCCcchhhhhHHHHHH
Q 002938 248 YWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG-----RSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 321 (864)
Q Consensus 248 yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~l~~-----~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 321 (864)
||+||||||+.+|+++|++|++|+.+|.+++++. ..++...++.+||.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 7899999999999999999999999999998863 3466678999999999999999999999999999998874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=7.8e-14 Score=169.42 Aligned_cols=291 Identities=14% Similarity=0.076 Sum_probs=201.9
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
+++++.+++.|++ .+|+++.+.|.+.+++|+.+|++++|..+.. .+|..++.||.+|.||+..++|+++ ..+|++.+
T Consensus 69 ~~~~~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~~~-~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~ 145 (943)
T COG0383 69 KDRVKLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFDAE-RFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAV 145 (943)
T ss_pred hhhHHHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHHHH-HhhhhhccccccccchhhhhhhHHH-HhcCCchh
Confidence 4589999999999 6899999999999999999999999999865 6779999999999999999999999 99999999
Q ss_pred eEeccchHhH--H--h-----hccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccC
Q 002938 82 FYGRIDYQDR--A--K-----RKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDY 152 (864)
Q Consensus 82 ~~~R~~~~~k--~--~-----~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~ 152 (864)
.|+|+..... + . .....-.|..|.+++ +++++-+.++..|..+ .. + . .+...
T Consensus 146 ~f~r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g-~~----I-~---------~~gha 206 (943)
T COG0383 146 AFGRGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNG-NE----I-P---------AVGHA 206 (943)
T ss_pred hcccccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhcc-cc----c-c---------ccchh
Confidence 9999874211 0 0 111223467788888 8888888888888766 11 0 0 00001
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CcEEEEEcC----ccchHHHHhhc
Q 002938 153 NVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYST----PSIYTDAKYAS 227 (864)
Q Consensus 153 nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~~~~~~~li~~iN~~-~~~~i~~sT----~~~Yf~a~~~~ 227 (864)
.++-.+..-++..++. ..+..++++.|+|..+. +.+....+.+.|.- ......|+- ..+|+......
T Consensus 207 hid~aWlw~l~et~r~---a~ts~~~~~~l~D~~p~-----~~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ 278 (943)
T COG0383 207 HIDTAWLWPLDETERK---ASTSFSLVMNLMDHYPV-----QKFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMW 278 (943)
T ss_pred hHHHHHhccHHHHHHH---HhhhhhheecccccChh-----hhhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccc
Confidence 1222222223333333 45667889999986543 44555556666632 233334444 44555443222
Q ss_pred C-CCCCcccCCCcc--ccccCCCce--eeeeechhhHHHHHHHHhHHHH-HHHHHHH-------hhc---cCCCCCchHH
Q 002938 228 N-ESWPLKTDDFFP--YADRAHAYW--TGYFSSRPALKRYVKVMSGYYL-AARQLEF-------YIG---RSETGHNTDS 291 (864)
Q Consensus 228 ~-~~~p~~~gdf~~--y~~~~~~yW--tG~yTSr~~~K~~~R~~e~~L~-~aE~l~~-------l~~---~~~~~~~~~~ 291 (864)
- ...++.+|+++. +..+. .|. -..-+||..+|..+...+..|- -+|++.. ++. ..+|...+.-
T Consensus 279 ve~d~n~~sGEslsrq~~~gq-~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w 357 (943)
T COG0383 279 VEEDLNTPSGESLSRQFLYGQ-RFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRW 357 (943)
T ss_pred ccccCCccccchhhhhhhccc-eeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHhee
Confidence 1 245778888754 11100 000 1334899999999998888874 6677764 332 2356666777
Q ss_pred HHHHHHHHcccccccCCcchhhhhHHHHHHHH
Q 002938 292 LADALAIAQHHDAVTGTEKQHVANDYAKRLAI 323 (864)
Q Consensus 292 lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~ 323 (864)
.|+.++.++.||++|||+.+.|+.+...|...
T Consensus 358 ~~~dg~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 358 RWKDGTENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred ecccccccceeecCCCCcccHHHHHHHhhhhh
Confidence 89999999999999999999999999888766
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=97.62 E-value=0.00011 Score=82.32 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCH-HHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHY-IDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~-es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
+.+|+|+++|++|++|++|..+=-.+..- +++..|+..|...+++.||++|+..|.|- .+.+..+..++ +.+||+++
T Consensus 114 ~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~~Gi~~~ 191 (360)
T PF03065_consen 114 EAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AEAGIRYT 191 (360)
T ss_dssp HHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HHTT--EE
T ss_pred HHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HHcCCEEE
Confidence 46899999999999999999988877777 99999999999999999999999999986 58999999999 99999999
Q ss_pred eEeccc
Q 002938 82 FYGRID 87 (864)
Q Consensus 82 ~~~R~~ 87 (864)
++.--.
T Consensus 192 i~d~~~ 197 (360)
T PF03065_consen 192 ILDGHQ 197 (360)
T ss_dssp EEECHH
T ss_pred EECcHH
Confidence 987533
No 13
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=94.74 E-value=0.084 Score=48.84 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=60.9
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCC-chHHHHHHHhhcCCcE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 80 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGh-s~~~p~ll~~~~G~~~ 80 (864)
.+.+++++++| +||.+=||.-++-...+.+.+.+++..+.++|++.+|..|+ +|. =|||. +..+-+++ +++||++
T Consensus 47 ~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~-~f~-~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 47 PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSREILEEITGRPPK-GFR-YPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHHHSSEES-EEE--GGGEECHHHHHHH-HHTT-EE
T ss_pred cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCCCc-EEE-CCCCCCCHHHHHHH-HHcCCCc
Confidence 36799999999 99999999999999999999999999999999999999333 344 57776 67777999 8999987
Q ss_pred E
Q 002938 81 F 81 (864)
Q Consensus 81 ~ 81 (864)
.
T Consensus 123 ~ 123 (123)
T PF01522_consen 123 D 123 (123)
T ss_dssp E
T ss_pred C
Confidence 3
No 14
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=94.15 E-value=2.3 Score=46.03 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhh-cCCcEE
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE-VGFDSF 81 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~-~G~~~~ 81 (864)
+.+|+++++| .||.+=||...+-..-+.+...++|..+.+-|++..|.+| .||.- -.+|..++.|+ ++ .||.+.
T Consensus 107 ~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~ 181 (297)
T TIGR03212 107 EAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYD 181 (297)
T ss_pred HHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHHHHHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEe
Confidence 5789999999 9999999998877777889999999999998888778764 56753 36899999999 88 999998
Q ss_pred eEeccc
Q 002938 82 FYGRID 87 (864)
Q Consensus 82 ~~~R~~ 87 (864)
.-+..+
T Consensus 182 sd~~~d 187 (297)
T TIGR03212 182 ADSYAD 187 (297)
T ss_pred Cchhhc
Confidence 877765
No 15
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.18 Score=56.08 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCC-HHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCCcEE
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTH-YIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~-~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~ 81 (864)
+++|++.++|.+|+++.+.+-.=--+-. -|++=-|+..|.+-..++||..|+--|+| --++...++.+| +..||+++
T Consensus 127 ~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlP-Ecay~pgie~~l-~~~Gi~yf 204 (504)
T COG1543 127 EAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLP-ECAYAPGIERIL-KDAGIEYF 204 (504)
T ss_pred HHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceech-hhccccchHHHH-HhcCceEE
Confidence 4789999999999999876643322222 38888999999999999999999999999 669999999999 99999999
Q ss_pred eEe
Q 002938 82 FYG 84 (864)
Q Consensus 82 ~~~ 84 (864)
+.-
T Consensus 205 ~vd 207 (504)
T COG1543 205 FVD 207 (504)
T ss_pred Eec
Confidence 986
No 16
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=89.93 E-value=1.7 Score=43.73 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCC-CchHHHHHHHhhcCCcEE
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG-HSAVQAYLLGSEVGFDSF 81 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FG-hs~~~p~ll~~~~G~~~~ 81 (864)
+.+|+++++|- ||-+-+|.-++-..-+.+.+.+++..+.+.+++..|..|+ |--=|+| ++..+..++ ++.||..+
T Consensus 49 ~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 49 ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 67999999995 8999999998888888999999999999999999998875 3445666 466778888 89999843
No 17
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=88.07 E-value=10 Score=45.36 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCeEEecceeeec------ccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhc
Q 002938 3 HEVKQLVGSGQLEFINGGMCMH------DEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEV 76 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~------Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~ 76 (864)
+.+|++++.|+.|++.--|--+ |.. -+++.++|+..+....++-||+.|+..|.+- +=.+.++..++ +.+
T Consensus 183 ~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~g--w~~d~~~qv~~~~~~~~elfG~~p~~~~~tE-l~y~~~i~~~~-~e~ 258 (615)
T COG1449 183 EAFRELAESGKVELTASPYYHSLIPLLADDG--WYEDFKEQVMMSRELYKELFGVWPSGFWNTE-LAYNDQILEYF-EES 258 (615)
T ss_pred HHHHHHHhcCceEEEecccccccchhcccCC--chHHHHHHHHHHHHHHHHHhCCCCccccChh-hhccHHHHHHH-HHc
Confidence 4689999999999987666432 333 5668999999999999999999999999864 56788999999 999
Q ss_pred CCcE
Q 002938 77 GFDS 80 (864)
Q Consensus 77 G~~~ 80 (864)
|+..
T Consensus 259 G~~~ 262 (615)
T COG1449 259 GFSW 262 (615)
T ss_pred CCcc
Confidence 9995
No 18
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=87.71 E-value=2.6 Score=43.66 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=64.4
Q ss_pred hHHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCC-CchHHHHHHHhhcCCcE
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG-HSAVQAYLLGSEVGFDS 80 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FG-hs~~~p~ll~~~~G~~~ 80 (864)
.+.+|+++++|- ||-+-+|.-++-..-+.+.+.+++....+.|++..|..+ ..|--=|+| ++..+.+++ +++|+..
T Consensus 79 p~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~ 155 (224)
T TIGR02884 79 PDLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYT 155 (224)
T ss_pred HHHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcE
Confidence 357999999994 788889998888888999999999999999998888762 346667899 577889999 8999985
Q ss_pred E
Q 002938 81 F 81 (864)
Q Consensus 81 ~ 81 (864)
+
T Consensus 156 v 156 (224)
T TIGR02884 156 V 156 (224)
T ss_pred E
Confidence 4
No 19
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=83.04 E-value=6.4 Score=42.00 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCC-chHHHHHHHhhcCCcE
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 80 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGh-s~~~p~ll~~~~G~~~ 80 (864)
+.+|+++++|. ||-+=+|.-++-..-+.+.+.+++..+.+.+++..|..|+ |--=|+|. +..+.+++ +.+|+..
T Consensus 128 ~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 128 QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 46899999995 7899999998888889999999999999999999999877 66668887 56788888 8999864
No 20
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=79.10 E-value=6.8 Score=41.72 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCeEEecceeeecccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCC--CCc-hHHHHHHHhhcCCc
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPF--GHS-AVQAYLLGSEVGFD 79 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~F--Ghs-~~~p~ll~~~~G~~ 79 (864)
+.||+++++| .||.+=||.-.+-..-+.+.+..++....+.|++..|..|+ ||-.=.+ |.. .....++ +++||.
T Consensus 58 ~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~ 134 (265)
T TIGR03006 58 ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRRSKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYR 134 (265)
T ss_pred HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCE
Confidence 5799999999 69999999988777778899999999999999888888765 5643333 332 3346899 999999
Q ss_pred EEeEe
Q 002938 80 SFFYG 84 (864)
Q Consensus 80 ~~~~~ 84 (864)
+..-.
T Consensus 135 YdsS~ 139 (265)
T TIGR03006 135 YSSSI 139 (265)
T ss_pred EEEee
Confidence 86655
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=76.93 E-value=76 Score=38.40 Aligned_cols=151 Identities=17% Similarity=0.290 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCeEEecceeeecccC--------------------CCCHH-------HHHHHHHHHHHHHHhHhCCCCce
Q 002938 3 HEVKQLVGSGQLEFINGGMCMHDEA--------------------VTHYI-------DMIDQTTLGHRFIKNEFGVTPRI 55 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~Dea--------------------~~~~e-------s~Irql~~G~~~l~~~fG~~p~v 55 (864)
++||+++++|-+||-+=+|..|... ...|| .+.+.+....+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 5899999999999878888655321 11232 26678999999999999998875
Q ss_pred eeecCCCCC-chHHHHHHHhhcCCcEEeEeccchHhHHhhccCCceEEEEecCCCCCCCcceeEeeCCCCCCCCCCCccc
Q 002938 56 GWQIDPFGH-SAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYF 134 (864)
Q Consensus 56 gW~iD~FGh-s~~~p~ll~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f 134 (864)
-.=|||+ +.....++ +++||+..+..+-.... .++...=.+|.+
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~~G~~~----------------~~~~~~LpRi~I---------------- 292 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLESGLAN----------------ASQLDSIPRVLI---------------- 292 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeCCCCCC----------------CCCcCccceEEe----------------
Confidence 4568885 66788999 89999988876532110 000000011111
Q ss_pred cccCCCCccccCcccccCCHHHHHHHHHHHHHHhhhccCCCeEEEeecCCCCcc-chHHHHHHHHHHHHHHhcCC
Q 002938 135 EVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQ-YARTWFRQLDKFIHYVNMDG 208 (864)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~-~a~~~~~~~~~li~~iN~~~ 208 (864)
. .++ . ++.|...+... ......+++-.+-|+-|+ ++..+-++++.+|+.+.+.+
T Consensus 293 --~-------~~~-----s----l~~f~~~v~~~--~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 293 --A-------NNP-----S----LKEFAQQIITV--QEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred --c-------CCC-----C----HHHHHHHHhcc--cCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 0 000 1 23455554422 225556788888888884 66677889999999887654
No 22
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=72.86 E-value=40 Score=32.34 Aligned_cols=96 Identities=9% Similarity=0.032 Sum_probs=57.4
Q ss_pred CCceEEe-cceEEEEEeCCCCCeEEEEecCCceEEEEEEeEEEecccCCCCCCCCCCCcceEEccCCCceeccCCcccEE
Q 002938 488 KSTVEVG-QGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLT 566 (864)
Q Consensus 488 ~~~~~ie-N~~~~v~~~~~~G~l~si~~k~~g~~~~~~~~~~~Y~~~~g~~~~~~~~sgaY~F~P~~~~~~~~~~~~~i~ 566 (864)
.+..+|+ ++.|+|.++.+++.+. |++|++|....+-.+-.+..+ ++...+|+|.-+. .+.+....+|.
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~~--------Gdg~~~fDFk~~~--tf~L~DGTKIt 75 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDAD--------GDGKTDFDFKGDM--TFQLDDGTKIT 75 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCccccC--------CCcccceeecCce--EEEeCCCCEEE
Confidence 3455677 7889999996678885 999999998876444333221 2223478887443 45555445666
Q ss_pred EEEcCceEEEEEEEcceEEEEEEEecCCCeEEEE
Q 002938 567 VMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVE 600 (864)
Q Consensus 567 v~~G~l~~~v~~~~~~~i~~~vrL~~~~~~ie~e 600 (864)
|..=|.-. ...++..+.+.++...+.++
T Consensus 76 V~T~p~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 76 VDTVPWGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred EeeeecCC------CcEEeeeEEEEcCCceEEEe
Confidence 64333221 12334445666676666655
No 23
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=70.06 E-value=17 Score=43.79 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=63.5
Q ss_pred hHHHHHHHHcCCeEEecceeeeccc--------------------CCCCHHH-------HHHHHHHHHHHHHhHhCCCCc
Q 002938 2 QHEVKQLVGSGQLEFINGGMCMHDE--------------------AVTHYID-------MIDQTTLGHRFIKNEFGVTPR 54 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgwv~~De--------------------a~~~~es-------~Irql~~G~~~l~~~fG~~p~ 54 (864)
.++||+++++|-+||-+=+|..+.. ....+|+ +-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3589999999999988888877632 1223443 556688888999999999887
Q ss_pred eeeecCCCCC-chHHHHHHHhhcCCcEEeEecc
Q 002938 55 IGWQIDPFGH-SAVQAYLLGSEVGFDSFFYGRI 86 (864)
Q Consensus 55 vgW~iD~FGh-s~~~p~ll~~~~G~~~~~~~R~ 86 (864)
. -.=|||+ +...-.++ +++||+..+..+-
T Consensus 247 ~--FayPyG~yn~~~~~ia-k~aGy~~afTt~~ 276 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNIL-RQHGYQLAMTLDP 276 (672)
T ss_pred E--EEcCCCCcCHHHHHHH-HHCCCcEEEECCC
Confidence 4 4468985 77889999 9999999888764
No 24
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=57.86 E-value=9.5 Score=30.50 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=14.9
Q ss_pred hHHHHHHHHcCCeEEeccee
Q 002938 2 QHEVKQLVGSGQLEFINGGM 21 (864)
Q Consensus 2 k~~vk~LV~~GrlE~vgGgw 21 (864)
++-+-++|++|+||++||-|
T Consensus 39 ~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 39 QEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHCCcEEecCCEE
Confidence 34567899999999999877
No 25
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=44.92 E-value=85 Score=34.01 Aligned_cols=81 Identities=12% Similarity=-0.022 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCeEEecceeeec----ccCCCCHHHHHHHHHHHHHHHHhHhCCCCceeeecCCCCCchHHHHHHHhhcCC
Q 002938 3 HEVKQLVGSGQLEFINGGMCMH----DEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGF 78 (864)
Q Consensus 3 ~~vk~LV~~GrlE~vgGgwv~~----Dea~~~~es~Irql~~G~~~l~~~fG~~p~vgW~iD~FGhs~~~p~ll~~~~G~ 78 (864)
+.||+.+++ .|+-+=||.-. ....-+.+.+.++|..+.+-+++-.|..| .||-+=.+-.+..+..++ +++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p-~g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPV-TCSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCC-CEEeCCCccCCHHHHHHH-HHcCC
Confidence 457788888 99888888855 23456778899999999999988888765 356555556678889999 99999
Q ss_pred cEEeEeccc
Q 002938 79 DSFFYGRID 87 (864)
Q Consensus 79 ~~~~~~R~~ 87 (864)
.|---.|.+
T Consensus 168 ~Y~Ss~~~d 176 (296)
T PRK15394 168 RYNSDCRGT 176 (296)
T ss_pred eeecCCCCC
Confidence 998555554
No 26
>PRK10148 hypothetical protein; Provisional
Probab=36.86 E-value=12 Score=36.03 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.8
Q ss_pred CceeeecCCCCCchHHH
Q 002938 53 PRIGWQIDPFGHSAVQA 69 (864)
Q Consensus 53 p~vgW~iD~FGhs~~~p 69 (864)
++.||..|+||++|++-
T Consensus 123 ~~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 123 HGFGKVTDKFGVPWMIN 139 (147)
T ss_pred hccEEEECCCCCEEEEE
Confidence 48899999999999764
No 27
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=31.32 E-value=3.5e+02 Score=30.18 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=23.6
Q ss_pred CceEEecceEEEEEeCCCCCeEEEEecC
Q 002938 489 STVEVGQGNLKLIFSSDKSKPINYINNK 516 (864)
Q Consensus 489 ~~~~ieN~~~~v~~~~~~G~l~si~~k~ 516 (864)
..++|+|+.++++|+...|.|.++.-|+
T Consensus 74 ~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 74 KRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CeEEEECCeEEEEEeCCCceeeeecccc
Confidence 4689999999999997778998887654
No 28
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=25.90 E-value=8.3e+02 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.5
Q ss_pred EecceEEEEEeCCCCCeEEEEecCCceEEEE-EEeEEEeccc
Q 002938 493 VGQGNLKLIFSSDKSKPINYINNKSLVEESV-EQSYSFYPAY 533 (864)
Q Consensus 493 ieN~~~~v~~~~~~G~l~si~~k~~g~~~~~-~~~~~~Y~~~ 533 (864)
|.++..++.||+.+|.|+|+.- .|+++.. ...+..+..-
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRAp 41 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAP 41 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S-
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCC
Confidence 5667789999988999999875 5666653 3445556543
No 29
>KOG4120 consensus G/T mismatch-specific thymine DNA glycosylase [Replication, recombination and repair]
Probab=20.56 E-value=3.4e+02 Score=29.26 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=67.3
Q ss_pred ecccCCCCHHHHH-HHHHHHHHHHHhHhC-CCCceeeecCCCCCchHHHHHHHhhcCCcEEeEeccchHhHHhhccCCce
Q 002938 23 MHDEAVTHYIDMI-DQTTLGHRFIKNEFG-VTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSL 100 (864)
Q Consensus 23 ~~Dea~~~~es~I-rql~~G~~~l~~~fG-~~p~vgW~iD~FGhs~~~p~ll~~~~G~~~~~~~R~~~~~k~~~~~~~~~ 100 (864)
|.--++++.-++- ..|..|-|-|.+++. ++|+||=-+ |- .+=.+|| + ++++ ...|.+
T Consensus 208 mvaR~t~gsaDL~~kE~~eG~RIL~eKlqryrP~VavFn---GK--~I~E~fs-k-----~~~g----------~~~K~f 266 (426)
T KOG4120|consen 208 MVARPTSGSADLRKKEMQEGARILYEKLQRYRPQVAVFN---GK--GIWEEFS-K-----MLTG----------KLPKTF 266 (426)
T ss_pred eeccCCCCcccccHHHHhcchHHHHHHHHhhCcceEEEc---Cc--chHHHHH-H-----Hhhc----------cCccee
Confidence 4444444554544 467889998888887 488877433 21 2222331 1 1122 224678
Q ss_pred EEEEecCCCCCCCcceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHHHHhhhccCCCeEEEe
Q 002938 101 EVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWT 180 (864)
Q Consensus 101 eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~ 180 (864)
+|=|++.. . .++..|+.+||.+-.- |.+|- + .-...|+-..++++.++++....+.....+..+
T Consensus 267 ~FG~QP~k-~-~dt~tfv~VmpsSSaR-cAq~p--r-----------a~dKv~~y~~lk~~rd~l~giv~h~d~qe~~yt 330 (426)
T KOG4120|consen 267 VFGWQPEK-F-GDTNTFVGVMPSSSAR-CAQYP--R-----------AEDKVNLYNLLKEERDRLRGIVKHADVQEVQYT 330 (426)
T ss_pred EeccCccc-C-CCcceEEEEccCcchh-hhcCC--h-----------hhhhhhHHHHHHHHHHHhhcccccccceeeEEE
Confidence 99999752 2 2899999999974211 11220 0 011234444566777777766555555556555
Done!