BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002939
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 94/220 (42%), Gaps = 34/220 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGK--IQGELA--DQLGMK 74
+ +YGM G GK+ L E R D E F+ IGK G L L M+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVR----DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205
Query: 75 FSQGEIADQR-GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN 133
Q E QR + + D R R L L+K + L+ILD++W+ L+
Sbjct: 206 LDQEESFSQRLPLNIEEAKD---RLRVLM--LRKHPRSLLILDDVWDPWVLKAFD----- 255
Query: 134 DWRGCKVLLTARDRHVLGSIGSKTFQIDV---LNEE---EAWTLFKKMTGDCAEKGELNF 187
C++LLT RD+ V S+ + V L E E +LF M +K +L
Sbjct: 256 --NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----KKEDLPA 308
Query: 188 VAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLK 227
A I KEC G P+ + + LR+ + W LRQL+
Sbjct: 309 EAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 34/220 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGK--IQGELA--DQLGMK 74
+ +YGM G GK+ L E R D E F+ IGK G L L M+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVR----DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 212
Query: 75 FSQGEIADQR-GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN 133
Q E QR + + D R R L L+K + L+ILD++W+ L+
Sbjct: 213 LDQEESFSQRLPLNIEEAKD---RLRVLM--LRKHPRSLLILDDVWDPWVLKAFD----- 262
Query: 134 DWRGCKVLLTARDRHVLGSIGSKTFQIDV---LNEE---EAWTLFKKMTGDCAEKGELNF 187
C++LLT D+ V S+ + V L E E +LF M +K +L
Sbjct: 263 --NQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----KKEDLPA 315
Query: 188 VAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLK 227
A I KEC G P+ + + LR+ + W LRQL+
Sbjct: 316 EAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKI--QGELA--DQLGMK 74
+ ++GM G GK+ L E R D E F +GK G L L +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVR----DHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 211
Query: 75 FSQGEIADQR-GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN 133
Q E QR + + D R R L L+K + L+ILD++W+ L+
Sbjct: 212 LDQDESFSQRLPLNIEEAKD---RLRILM--LRKHPRSLLILDDVWDSWVLKAFDSQ--- 263
Query: 134 DWRGCKVLLTARDRHVLGSIGSKTFQIDV---LNEE---EAWTLFKKMTGDCAEKGELNF 187
C++LLT RD+ V S+ + + V L +E E +LF M +K +L
Sbjct: 264 ----CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPE 314
Query: 188 VAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLK 227
A I KEC G P+ + + LR+ + W+ L+QL+
Sbjct: 315 QAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 352
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGK--IQGELA--DQLGMK 74
+ ++GM G GK+ L E R D E F +GK G L L +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVR----DHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 205
Query: 75 FSQGEIADQR-GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN 133
Q E QR + + D R R L L+K + L+ILD++W+ L+
Sbjct: 206 LDQDESFSQRLPLNIEEAKD---RLRILM--LRKHPRSLLILDDVWDSWVLKAFD----- 255
Query: 134 DWRGCKVLLTARDRHVLGSIGSKTFQIDV---LNEE---EAWTLFKKMTGDCAEKGELNF 187
C++LLT RD+ V S+ + + V L +E E +LF M +K +L
Sbjct: 256 --SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPE 308
Query: 188 VAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLK 227
A I KEC G P+ + + LR+ + W+ L+QL+
Sbjct: 309 QAHSIIKECKGSPLVVSLIGALLRD--FPNRWEYYLKQLQ 346
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 411 LEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYM---ATC 467
L L L G + LP EI L+ L++LDLS+ + P L + QL+ Y
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVT 306
Query: 468 CIKWEISN-CSLLEEIVGKEGG 488
+ WE N C+L + +G EG
Sbjct: 307 TLPWEFGNLCNL--QFLGVEGN 326
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 233 NFDGVLAKTLEGI----DTVEEARDKVCTSVQELKDACLLLDGENSDWFSM----HDVVR 284
++ +L + G+ D E RDK +Q KD+ LLLD +N + S+ H +V
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS-LLLDKDNEKFLSVRGTTHLLVH 185
Query: 285 DVAISIASRDRRVFTMRNE 303
DVA+ A R V T +E
Sbjct: 186 DVALEDAGYYRCVLTFAHE 204
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 659 KCLQLSGLNDLK-HLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTK-LS 716
K LSG +DL LW WE N L F+ E + N K+ PS+ + CL + +
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVK 166
Query: 717 VWCCEQ 722
VW Q
Sbjct: 167 VWSLGQ 172
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78
IG++G GVGKT L++E+ ++ VFA V E G + L +
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEH-GGLSVFAGVGERTREG-------NDLYHEMKDS 198
Query: 79 EIADQRGMKFSQESDVPGRARKL---------YARLQKENKILVILDNIW 119
+ + M F Q ++ PG ++ Y R ++ +L+ +DNI+
Sbjct: 199 GVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFIDNIF 248
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 405 IGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463
IG + L IL+L DI +P E+G L L +LDLS +L P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS-SNKLDGRIPQAMSALTMLTEID 707
Query: 464 MATCCIKWEI 473
++ + I
Sbjct: 708 LSNNNLSGPI 717
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 405 IGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463
IG + L IL+L DI +P E+G L L +LDLS +L P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS-SNKLDGRIPQAMSALTMLTEID 710
Query: 464 MATCCIKWEI 473
++ + I
Sbjct: 711 LSNNNLSGPI 720
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 659 KCLQLSGLNDLK-HLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTK-LS 716
K LSG +DL LW WE N L F+ E + N K+ PS+ + CL + +
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVK 166
Query: 717 VWCCEQ 722
VW Q
Sbjct: 167 VWSLGQ 172
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 186 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 243
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 244 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 292
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 404 IIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEEL 462
I EL+ L L L C +E L P L+ L++L+++ +LK + + L+ L+++
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523
Query: 463 YMAT 466
++ T
Sbjct: 524 WLHT 527
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMK 74
D+ IIG GG ++ +++RR K +L D + + + P + D+LGM
Sbjct: 8 DVLIIG----GGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMP 63
Query: 75 FSQGE 79
+ +GE
Sbjct: 64 YPKGE 68
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 159 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 216
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 217 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 265
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 159 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 216
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 217 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 265
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 153 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 210
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 211 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 259
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 148 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 205
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 206 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 254
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 19 IGMYGMGGVGKTTLVKEVARR-AKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77
IG++G GVGKT ++E+ AK F VF V E G + G+ +
Sbjct: 148 IGLFGGAGVGKTVFIQELINNIAKAHGGFS--VFTGVGERTREGNDLYREMKETGVINLE 205
Query: 78 GEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
GE + + F Q ++ PG RAR Y R ++ +L+ +DNI+
Sbjct: 206 GE--SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIF 254
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 659 KCLQLSGLNDLK-HLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTK-LS 716
K LSG +DL LW WE N L F+ E + N K+ PS+ + CL + +
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVK 166
Query: 717 VWCCEQ 722
VW Q
Sbjct: 167 VWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 659 KCLQLSGLNDLK-HLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTK-LS 716
K LSG +DL LW WE N L F+ E + N K+ PS+ + CL + +
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVK 166
Query: 717 VWCCEQ 722
VW Q
Sbjct: 167 VWSLGQ 172
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 274 SDWFSMHDVVRDVAISIASRDRRVFTMRNEVDPRKWADKYLLKKCSTISLHG--NNISEI 331
S+W V D ++ R V + R V P +W + + + I + G N+ +I
Sbjct: 127 SNWXGYVAVTDDQGTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFGERNDQVQI 186
Query: 332 PQGW 335
QGW
Sbjct: 187 HQGW 190
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 202
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 203 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 251
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 210
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 211 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 259
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 663 LSGLNDLKHLWLWEENSKLNMI------FQNLETLDISFCRNLKNLLPSSASFRCLTKLS 716
++ L +LK L + NS L+ + LE LD+ C L+N P L +L
Sbjct: 202 IANLQNLKSLKI--RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 717 VWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFP 768
+ C L+ L L QL + + GC ++ L I AN I P
Sbjct: 260 LKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 212
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 213 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 261
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 260
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 261 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 309
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 214
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 215 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 214
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 215 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQ--LGMKF 75
IG++G GVGKT L+ E+ K VFA V E T + + E+ + + +K
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVINLKD 214
Query: 76 SQGEIADQRGMKFSQESDVPG-RARKL--------YARLQKENKILVILDNIW 119
+ ++A + + Q ++ PG RAR Y R Q+ +L+ +DNI+
Sbjct: 215 ATSKVA----LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78
IG++G GVGKT L++E+ ++ VFA V E G + L +
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREG-------NDLYHEMKDS 205
Query: 79 EIADQRGMKFSQESDVPGRARKL---------YARLQKENKILVILDNIW 119
+ + M F Q ++ PG ++ Y R ++ L+ +DNI+
Sbjct: 206 GVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 429 GQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463
G+LT K LD++Y + + +P +L LS LE Y
Sbjct: 673 GRLTLDKALDMTYYLQHETSSPALLEGLSYLESFY 707
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 429 GQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463
G+LT K LD++Y + + +P +L LS LE Y
Sbjct: 673 GRLTLDKALDMTYYLQHETSSPALLEGLSYLESFY 707
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 577 LEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADG 636
+ E+RL + I I G F + KL+ + + N++ LAPD + +L +L L
Sbjct: 34 ITEIRLE-QNTIKVIPPGAFSPY--KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 637 SY----KELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWL 674
K LF ++ L+ +I CL++ DL +L L
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,446,116
Number of Sequences: 62578
Number of extensions: 990746
Number of successful extensions: 2627
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2606
Number of HSP's gapped (non-prelim): 78
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)